Query 022974
Match_columns 289
No_of_seqs 113 out of 137
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 14:14:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022974.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022974hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zsq_A Myotubularin-related pr 91.2 0.37 1.3E-05 47.8 6.8 103 163-277 7-113 (528)
2 1lw3_A Myotubularin-related pr 89.3 0.62 2.1E-05 47.5 6.8 103 162-276 78-184 (657)
3 2yf0_A Myotubularin-related pr 72.9 13 0.00045 36.8 8.9 80 179-276 18-97 (512)
4 2hth_B Vacuolar protein sortin 69.7 3.3 0.00011 34.1 3.3 51 183-245 35-85 (140)
5 2cay_A VPS36 PH domain, vacuol 45.3 15 0.00052 30.4 3.2 48 183-241 48-95 (145)
6 1vcb_B Protein (elongin C); tu 37.8 12 0.00041 29.4 1.4 20 238-257 12-31 (112)
7 1eaz_A Tandem PH domain contai 37.7 61 0.0021 23.5 5.2 61 221-282 55-118 (125)
8 1hv2_A Elongin C, ELC1; protei 34.8 18 0.00061 27.6 1.9 17 241-257 2-18 (99)
9 2d9z_A Protein kinase C, NU ty 32.8 25 0.00084 29.4 2.6 42 215-259 44-89 (129)
10 2fnj_C Transcription elongatio 32.4 17 0.00058 27.5 1.4 15 243-257 1-15 (96)
11 2coa_A Protein kinase C, D2 ty 28.0 35 0.0012 28.3 2.7 40 215-256 44-87 (125)
12 4ajy_C Transcription elongatio 26.6 23 0.00079 26.4 1.3 14 244-257 3-16 (97)
13 1zyi_A Methylosome subunit pic 26.4 56 0.0019 28.0 3.8 28 175-203 32-59 (171)
14 4ag4_A Epithelial discoidin do 24.8 36 0.0012 31.9 2.5 58 170-227 251-315 (351)
15 1zu2_A Mitochondrial import re 22.6 28 0.00095 29.0 1.1 20 257-276 101-120 (158)
16 2v6y_A AAA family ATPase, P60 20.4 53 0.0018 24.4 2.2 15 262-276 26-40 (83)
No 1
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*
Probab=91.16 E-value=0.37 Score=47.81 Aligned_cols=103 Identities=17% Similarity=0.177 Sum_probs=62.0
Q ss_pred cCCCCcchhhhhccc--ccccCCCCceeeEEEeeceeeeecCCCeeeeCCCCCeeeeEEEEEEecccccccccccccCCC
Q 022974 163 FATHQNETLKKTFAC--YLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAINPVIMRENS 240 (289)
Q Consensus 163 F~v~pgEkLlKa~aC--YLSTtaGPVaG~LfIST~kvAFCSDrpl~~~sp~Gq~~~~yYKVvIPL~kik~Vnps~n~~nP 240 (289)
|...|||.++..-.- |+..-.|++.|+|||++.|+.|.++.. .. .+.+-|||..|..|.........
T Consensus 7 ~~lLpGE~i~~~~~~V~~~~~~~~~~~GtL~lTn~rLiF~~~~~-------~~----~~~~~iPL~~I~~vek~~~~s~~ 75 (528)
T 1zsq_A 7 PPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER-------DP----PFVLDASLGVINRVEKIGGASSR 75 (528)
T ss_dssp CCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS-------SS----CEEEEEEGGGEEEEEEECCTTCC
T ss_pred CccCCCCeEEEecCCEEEeCCCCCceeEEEEEECCEEEEEccCC-------Cc----cEEEEeeccceEEEEEcCCCCcC
Confidence 557899999855211 444456899999999999999998521 10 24578999888777643211111
Q ss_pred c--CceEEEEEecCceeeeeechhHHHHHHHHHHHHhhh
Q 022974 241 S--EKYIQIVTIDGHEFWFMGFVNYDKATRHLSESISNF 277 (289)
Q Consensus 241 s--eKYIqIVTvD~~EFWFMGFvnYdKA~k~Lq~Als~~ 277 (289)
. -..|+|..-|- .++=.+|-.=+...+.+-++|.++
T Consensus 76 ~~~~~~l~I~CKDf-r~~~f~f~~~~~~~~~v~~~L~~~ 113 (528)
T 1zsq_A 76 GENSYGLETVCKDI-RNLRFAHKPEGRTRRSIFENLMKY 113 (528)
T ss_dssp STTCSEEEEEETTT-EEEEEECCGGGCCHHHHHHHHHHH
T ss_pred CCCCceEEEEccCC-eEEEEEecCchHHHHHHHHHHHHH
Confidence 1 12477776664 444445653333244444566553
No 2
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A
Probab=89.31 E-value=0.62 Score=47.53 Aligned_cols=103 Identities=18% Similarity=0.181 Sum_probs=61.4
Q ss_pred hcCCCCcchhhhhcc-c-ccccCCCCceeeEEEeeceeeeecCCCeeeeCCCCCeeeeEEEEEEecccccccccccccCC
Q 022974 162 TFATHQNETLKKTFA-C-YLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAINPVIMREN 239 (289)
Q Consensus 162 ~F~v~pgEkLlKa~a-C-YLSTtaGPVaG~LfIST~kvAFCSDrpl~~~sp~Gq~~~~yYKVvIPL~kik~Vnps~n~~n 239 (289)
-|...|||.++..-. . |+..-.|++.|+|||++.|+.|++... .. .+.+-|||..|..|........
T Consensus 78 ~~~LLPGE~v~~~~~~V~~~~p~~~~~~GtL~lTnyrLiF~~~~~-------~~----~~~~~IPL~~I~~Iekv~g~s~ 146 (657)
T 1lw3_A 78 EPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER-------DP----PFVLDASLGVINRVEKIGGASS 146 (657)
T ss_dssp CCCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS-------SS----CEEEEEEGGGEEEEEEECCTTC
T ss_pred CCccCCCeeEEEEeCCEEEecCCCCceeEEEEEECCEEEEEecCC-------Cc----ceEEEecccceEEEEecCCCcc
Confidence 466899999984421 1 344446899999999999999998521 11 2456799988888765322111
Q ss_pred CcC--ceEEEEEecCceeeeeechhHHHHHHHHHHHHhh
Q 022974 240 SSE--KYIQIVTIDGHEFWFMGFVNYDKATRHLSESISN 276 (289)
Q Consensus 240 Pse--KYIqIVTvD~~EFWFMGFvnYdKA~k~Lq~Als~ 276 (289)
..+ -.|+|..-|- .++=.+|-.=+...+.+-++|..
T Consensus 147 ~g~~~~~l~I~CKDf-R~~~f~f~~~~~~~~~v~~~L~~ 184 (657)
T 1lw3_A 147 RGENSYGLETVCKDI-RNLRFAHKPEGRTRRSIFENLMK 184 (657)
T ss_dssp CSTTCSEEEEEETTT-EEEEEECCGGGCCHHHHHHHHHH
T ss_pred cCCCCceEEEEecCC-cEEEEEeCCccchHHHHHHHHHH
Confidence 111 2466666654 44444565332323344455554
No 3
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}
Probab=72.92 E-value=13 Score=36.77 Aligned_cols=80 Identities=19% Similarity=0.258 Sum_probs=44.2
Q ss_pred cccCCCCceeeEEEeeceeeeecCCCeeeeCCCCCeeeeEEEEEEecccccccccccccCCCcCceEEEEEecCceeeee
Q 022974 179 LSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAINPVIMRENSSEKYIQIVTIDGHEFWFM 258 (289)
Q Consensus 179 LSTtaGPVaG~LfIST~kvAFCSDrpl~~~sp~Gq~~~~yYKVvIPL~kik~Vnps~n~~nPseKYIqIVTvD~~EFWFM 258 (289)
++.+-+++.|+|||++.|+-|.+|.. + .+.||+..|.+|.-.... .....|+|..-|-.-+=|
T Consensus 18 ~~~~~~~~~GtL~lTn~~LiF~~~~~--------~------e~wi~~~~I~~VeK~~~~--~~~~~l~I~CKDfr~~~f- 80 (512)
T 2yf0_A 18 FSTSNKSLTGTLYLTATHLLFIDSHQ--------K------ETWILHHHIASVEKLALT--TSGCPLVIQCKNFRTVHF- 80 (512)
T ss_dssp ------CCEEEEEECSSEEEEEESSS--------C------EEEEEGGGEEEEEECCCB--TTBEEEEEEETTSCEEEE-
T ss_pred cCCCCCceeEEEEEECCEEEEeCCCC--------C------ceEecccceeEEEEecCC--CCCceEEEEecCCcEEEE-
Confidence 44567999999999999999999532 2 245677777777532110 112357777777655444
Q ss_pred echhHHHHHHHHHHHHhh
Q 022974 259 GFVNYDKATRHLSESISN 276 (289)
Q Consensus 259 GFvnYdKA~k~Lq~Als~ 276 (289)
.|-.-+.+. .+-++|.+
T Consensus 81 ~f~~~~~~~-~v~~sL~~ 97 (512)
T 2yf0_A 81 IVPRERDCH-DIYNSLLQ 97 (512)
T ss_dssp EESCHHHHH-HHHHHHHH
T ss_pred EeCChHHHH-HHHHHHHh
Confidence 455544333 33344443
No 4
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A
Probab=69.70 E-value=3.3 Score=34.06 Aligned_cols=51 Identities=22% Similarity=0.136 Sum_probs=35.1
Q ss_pred CCCceeeEEEeeceeeeecCCCeeeeCCCCCeeeeEEEEEEecccccccccccccCCCcCceE
Q 022974 183 TGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAINPVIMRENSSEKYI 245 (289)
Q Consensus 183 aGPVaG~LfIST~kvAFCSDrpl~~~sp~Gq~~~~yYKVvIPL~kik~Vnps~n~~nPseKYI 245 (289)
+.--.|+|||+|.||.|-.+.. . ..-+.|||..|+.+...+..-..+-|++
T Consensus 35 ~~~k~G~l~LTshRli~~d~~~-------~-----~~s~~lpl~~v~~~e~~~~~f~~s~Ki~ 85 (140)
T 2hth_B 35 IKFDAGTLLLSTHRLIWRDQKN-------H-----ECCMAILLSQIVFIEEQAAGIGKSAKIV 85 (140)
T ss_dssp SCCCCEEEEEESSEEEEEETTC-------C-----SCCEEEEGGGEEEEEEECCTTSSCCEEE
T ss_pred CCCcCCEEEEecCEEEEecCCC-------C-----ceEEEEEhHHeeeeeeeccccccCceEE
Confidence 4668899999999999964421 0 1446788888877776665555555554
No 5
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12
Probab=45.31 E-value=15 Score=30.43 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=31.3
Q ss_pred CCCceeeEEEeeceeeeecCCCeeeeCCCCCeeeeEEEEEEecccccccccccccCCCc
Q 022974 183 TGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAINPVIMRENSS 241 (289)
Q Consensus 183 aGPVaG~LfIST~kvAFCSDrpl~~~sp~Gq~~~~yYKVvIPL~kik~Vnps~n~~nPs 241 (289)
.+--.|.|||+|.||.|-.+.+ | . -.-+.|||..|+.+...+-.-.++
T Consensus 48 ~~~k~G~lyLTshRIIyv~~~~-----~--~----~~SfslPL~~v~~~e~~~~~fg~s 95 (145)
T 2cay_A 48 LQRQRGRIFLTSQRIIYIDDAK-----P--T----QNSLGLELDDLAYVNYSSGFLTRS 95 (145)
T ss_dssp TTCSSEEEEEESSEEEEEESSC-----H--H----HHCEEEEGGGEEEEEEECSSSSSS
T ss_pred cCCCccEEEEEcCeEEEecCCC-----C--c----ceEEEeEhHheeeeeEEcCccccC
Confidence 5678999999999999965431 0 0 133567777777766655444433
No 6
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=37.84 E-value=12 Score=29.44 Aligned_cols=20 Identities=35% Similarity=0.795 Sum_probs=14.0
Q ss_pred CCCcCceEEEEEecCceeee
Q 022974 238 ENSSEKYIQIVTIDGHEFWF 257 (289)
Q Consensus 238 ~nPseKYIqIVTvD~~EFWF 257 (289)
+-|..+||.++|-||++|-.
T Consensus 12 ~~~~~~~v~L~SsDG~~F~V 31 (112)
T 1vcb_B 12 EGPDAMYVKLISSDGHEFIV 31 (112)
T ss_dssp -----CEEEEECTTSCEEEE
T ss_pred cCCCCCEEEEEcCCCCEEEE
Confidence 34567999999999999975
No 7
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1
Probab=37.70 E-value=61 Score=23.50 Aligned_cols=61 Identities=15% Similarity=0.192 Sum_probs=34.0
Q ss_pred EEEecccccccccccccCCCcCc-eEEEEEecCceeeeeec--hhHHHHHHHHHHHHhhhhccCc
Q 022974 221 VMLPLAMIGAINPVIMRENSSEK-YIQIVTIDGHEFWFMGF--VNYDKATRHLSESISNFVATGI 282 (289)
Q Consensus 221 VvIPL~kik~Vnps~n~~nPseK-YIqIVTvD~~EFWFMGF--vnYdKA~k~Lq~Als~~~~~~~ 282 (289)
=+|+|..+..|...........+ -++|+| ++..|.|..= -..+.=+..|++|+...+..+.
T Consensus 55 g~i~l~~~~~v~~~~~~~~~~~~~~F~i~~-~~r~~~l~a~s~~e~~~W~~al~~~i~~~~~~~~ 118 (125)
T 1eaz_A 55 RVIPLKEVHKVQECKQSDIMMRDNLFEIVT-TSRTFYVQADSPEEMHSWIKAVSGAIVAQRGPGR 118 (125)
T ss_dssp EEEEGGGCCEEEECTTHHHHTCSSEEEEEC-SSCEEEEECSSHHHHHHHHHHHHHHHHHTC----
T ss_pred eEEEcccceEEeeccccccCCcCCEEEEEe-CCcEEEEEcCCHHHHHHHHHHHHHHHHhccCCCC
Confidence 46888888777654333233333 456664 5677776442 2344556777788876665443
No 8
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=34.83 E-value=18 Score=27.60 Aligned_cols=17 Identities=24% Similarity=0.569 Sum_probs=14.8
Q ss_pred cCceEEEEEecCceeee
Q 022974 241 SEKYIQIVTIDGHEFWF 257 (289)
Q Consensus 241 seKYIqIVTvD~~EFWF 257 (289)
+.+||.++|-||++|-.
T Consensus 2 ~~~~v~L~SsDg~~f~V 18 (99)
T 1hv2_A 2 SQDFVTLVSKDDKEYEI 18 (99)
T ss_dssp CCSEEEEEETTTEEEEE
T ss_pred CCcEEEEEecCCCEEEE
Confidence 36899999999999964
No 9
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.85 E-value=25 Score=29.41 Aligned_cols=42 Identities=29% Similarity=0.431 Sum_probs=30.8
Q ss_pred eeeEEEEEEecccccccccccccCC--CcC--ceEEEEEecCceeeeee
Q 022974 215 TWSYYKVMLPLAMIGAINPVIMREN--SSE--KYIQIVTIDGHEFWFMG 259 (289)
Q Consensus 215 ~~~yYKVvIPL~kik~Vnps~n~~n--Pse--KYIqIVTvD~~EFWFMG 259 (289)
..-|||. |||.+|-.|.+..+-.. +.. -+.+|+| .+-.|. +|
T Consensus 44 ~~k~yke-IpLseIL~v~~~~~~~~~~~~~~phcFEi~T-~~~~y~-Vg 89 (129)
T 2d9z_A 44 GSKYYKE-IPLSEILRISSPRDFTNISQGSNPHCFEIIT-DTMVYF-VG 89 (129)
T ss_dssp CCSCCCE-ECTTTCCEECCTTCCCCSSSCSCCCSEEEEC-SSCEEE-EC
T ss_pred CCceece-eeHHHhcccccccCccccCCCCCCceEEEEE-CCEEEE-Ec
Confidence 3458887 99999999999866543 222 6799998 677765 44
No 10
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=32.35 E-value=17 Score=27.50 Aligned_cols=15 Identities=40% Similarity=0.950 Sum_probs=13.6
Q ss_pred ceEEEEEecCceeee
Q 022974 243 KYIQIVTIDGHEFWF 257 (289)
Q Consensus 243 KYIqIVTvD~~EFWF 257 (289)
+||.++|-||++|--
T Consensus 1 ~~v~L~SsDg~~f~V 15 (96)
T 2fnj_C 1 MYVKLISSDGHEFIV 15 (96)
T ss_dssp CEEEEECTTSCEEEE
T ss_pred CeEEEEecCCCEEEe
Confidence 699999999999965
No 11
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=28.01 E-value=35 Score=28.25 Aligned_cols=40 Identities=25% Similarity=0.373 Sum_probs=29.5
Q ss_pred eeeEEEEEEecccccccccccccCC--Cc--CceEEEEEecCceee
Q 022974 215 TWSYYKVMLPLAMIGAINPVIMREN--SS--EKYIQIVTIDGHEFW 256 (289)
Q Consensus 215 ~~~yYKVvIPL~kik~Vnps~n~~n--Ps--eKYIqIVTvD~~EFW 256 (289)
..-|||. |||.+|-.|.+..+... +. .-+.+|+| .+-.|.
T Consensus 44 ~~~~yke-IpL~eIl~v~~~~~~~~l~~~~~~hcFEi~T-~~~~yy 87 (125)
T 2coa_A 44 TNRYYKE-IPLSEILTVESAQNFSLVPPGTNPHCFEIVT-ANATYF 87 (125)
T ss_dssp CSSCSEE-EETTTCCEEEESCCCSSSCTTSCCEEEEEEC-SSCCCC
T ss_pred CCceeee-eehhHeecccccccccccCCCCCCceEEEEe-CCeEEE
Confidence 3458887 99999999999876553 21 26799999 566664
No 12
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=26.62 E-value=23 Score=26.43 Aligned_cols=14 Identities=43% Similarity=1.051 Sum_probs=12.5
Q ss_pred eEEEEEecCceeee
Q 022974 244 YIQIVTIDGHEFWF 257 (289)
Q Consensus 244 YIqIVTvD~~EFWF 257 (289)
||.+++.||++|--
T Consensus 3 ~v~L~SsDg~~F~v 16 (97)
T 4ajy_C 3 YVKLISSDGHEFIV 16 (97)
T ss_dssp EEEEECTTCCEEEE
T ss_pred EEEEEecCCcEEEe
Confidence 89999999999853
No 13
>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA splicing, translation; NMR {Canis lupus familiaris}
Probab=26.40 E-value=56 Score=28.03 Aligned_cols=28 Identities=21% Similarity=0.399 Sum_probs=21.9
Q ss_pred cccccccCCCCceeeEEEeeceeeeecCC
Q 022974 175 FACYLSTSTGPVAGTLYLSNVHVAFCSDR 203 (289)
Q Consensus 175 ~aCYLSTtaGPVaG~LfIST~kvAFCSDr 203 (289)
-++||-.. ..-.|+|||++.||.|-|+.
T Consensus 32 v~~vl~~~-~~g~GtLyVt~~~l~W~~~~ 59 (171)
T 1zyi_A 32 TEAVLNGK-GLGTGTLYIAESRLSWLDGS 59 (171)
T ss_dssp EEEEBTTB-CCCEEEEEEETTEEEEEETT
T ss_pred EEEEECCC-ccCceEEEEEcCEEEEEcCC
Confidence 56788654 33469999999999999875
No 14
>4ag4_A Epithelial discoidin domain-containing receptor 1; immune system-transferase complex; HET: NAG; 2.80A {Homo sapiens}
Probab=24.77 E-value=36 Score=31.92 Aligned_cols=58 Identities=16% Similarity=0.107 Sum_probs=43.9
Q ss_pred hhhhhcccccccCCCCceeeEEEeeceeeeecC-------CCeeeeCCCCCeeeeEEEEEEeccc
Q 022974 170 TLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSD-------RPLSFTAPSGQKTWSYYKVMLPLAM 227 (289)
Q Consensus 170 kLlKa~aCYLSTtaGPVaG~LfIST~kvAFCSD-------rpl~~~sp~Gq~~~~yYKVvIPL~k 227 (289)
++++=.+|.|-+..=.--|+-.-|..++=|+.| .|+.|........++-+-|.|||+.
T Consensus 251 ~~RnFt~~~ih~~n~~~~~v~~f~~~~~~Fs~~~~~~~~~~p~~~~~~~d~~~~~ar~v~i~l~~ 315 (351)
T 4ag4_A 251 RLRAFQAMQVHCNNMHTLGARLPGGVECRFRRGPAMAWEGEPMRHNLGGNLGDPRARAVSVPLGG 315 (351)
T ss_dssp EEEEEEEEEEEECCCGGGTBCCCSEEEEEEECSSSSSCSSSCEEEECSSCCSCCSCEEEEEEEEE
T ss_pred cEEEEEEEEEEecccccccceeeeEEEEEEECCCCccccCCceEeecCCCcCCCccceEEEeCCC
Confidence 557777888888777777777788889999988 3899987544444555679999983
No 15
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=22.58 E-value=28 Score=29.01 Aligned_cols=20 Identities=20% Similarity=0.306 Sum_probs=17.2
Q ss_pred eeechhHHHHHHHHHHHHhh
Q 022974 257 FMGFVNYDKATRHLSESISN 276 (289)
Q Consensus 257 FMGFvnYdKA~k~Lq~Als~ 276 (289)
-.+|=+|++|++++++||..
T Consensus 101 ~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 101 TEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccHHHHHHHHHHHHHh
Confidence 55678999999999999975
No 16
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=20.39 E-value=53 Score=24.42 Aligned_cols=15 Identities=13% Similarity=0.151 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHHHhh
Q 022974 262 NYDKATRHLSESISN 276 (289)
Q Consensus 262 nYdKA~k~Lq~Als~ 276 (289)
+|+.|+.++++||..
T Consensus 26 ~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 26 KVEDAITYYKKAIEV 40 (83)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 455555555555544
Done!