BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022975
(289 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3O08|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form I
pdb|3O08|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form I
pdb|3O1B|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Ii
pdb|3O1W|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iii
pdb|3O1W|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iii
pdb|3O4W|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iv
pdb|3O4W|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iv
pdb|3O5B|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Vii
With Glucose Bound (Open State)
pdb|3O5B|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Vii
With Glucose Bound (Open State)
pdb|3O6W|A Chain A, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Viii
(Open State)
pdb|3O6W|B Chain B, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Viii
(Open State)
pdb|3O80|A Chain A, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Ix
(Open State)
pdb|3O8M|A Chain A, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Xi
With Glucose Bound (Closed State)
Length = 485
Score = 160 bits (406), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 124/223 (55%), Gaps = 6/223 (2%)
Query: 54 KLRQVADAMTVEMHAGLASEGGSKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQ 113
K+R + E+ GL+ +GG+ + M+ +V PTG E G F ALDLGGTN RV+ V+
Sbjct: 40 KMRSIVKHFISELDKGLSKKGGN-IPMIPGWVVEYPTGKETGDFLALDLGGTNLRVVLVK 98
Query: 114 LGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELG 173
LGG Q + +P HL TG+S +L+ +IA L +FV E + LG
Sbjct: 99 LGGNHDFDTTQN--KYRLPDHLRTGTSEQLWSFIAKCLKEFV---DEWYPDGVSEPLPLG 153
Query: 174 FTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIG 233
FTFS+P Q I SG L +WTKGF IE G DVV L + +E++ + + V AL+NDT G
Sbjct: 154 FTFSYPASQKKINSGVLQRWTKGFDIEGVEGHDVVPMLQEQIEKLNIPINVVALINDTTG 213
Query: 234 TLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKS 276
TL Y + +I+GTG N AY + I K GLLP+
Sbjct: 214 TLVASLYTDPQTKMGIIIGTGVNGAYYDVVSGIEKLEGLLPED 256
>pdb|1BG3|A Chain A, Rat Brain Hexokinase Type I Complex With Glucose And
Inhibitor Glucose-6-Phosphate
pdb|1BG3|B Chain B, Rat Brain Hexokinase Type I Complex With Glucose And
Inhibitor Glucose-6-Phosphate
Length = 918
Score = 157 bits (396), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 123/220 (55%), Gaps = 8/220 (3%)
Query: 55 LRQVADAMTVEMHAGLASEGGSK--LKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRV 112
L +V + EM GL E SK +KML S+V ++P G E G F ALDLGGTNFRVL V
Sbjct: 484 LMEVKKRLRTEMEMGLRKETNSKATVKMLPSFVRSIPDGTEHGDFLALDLGGTNFRVLLV 543
Query: 113 QLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQREL 172
++ + R V+ + SIP +M G+ ELFD+I + ++ F+ G G + L
Sbjct: 544 KIRSGKKRTVEMHNKIYSIPLEIMQGTGDELFDHIVSCISDFLDYMG-----IKGPRMPL 598
Query: 173 GFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERI-GLDMRVAALVNDT 231
GFTFSFP QT++ G LI WTKGF D G DV L A++R D+ V A+VNDT
Sbjct: 599 GFTFSFPCHQTNLDCGILISWTKGFKATDCEGHDVASLLRDAVKRREEFDLDVVAVVNDT 658
Query: 232 IGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWHG 271
+GT+ Y +I+GTGTNA Y+E + G
Sbjct: 659 VGTMMTCAYEEPTCEIGLIVGTGTNACYMEEMKNVEMVEG 698
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 119/210 (56%), Gaps = 8/210 (3%)
Query: 65 EMHAGLASEGG--SKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVV 122
EM GL+ + + +KML ++V ++P G EKG F ALDLGG++FR+LRVQ+ + + V
Sbjct: 46 EMKNGLSRDYNPTASVKMLPTFVRSIPDGSEKGDFIALDLGGSSFRILRVQVNHEKNQNV 105
Query: 123 KQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQ 182
E E P +++ GS +LFD++A L F+ + P +GFTFSFP RQ
Sbjct: 106 SMESEIYDTPENIVHGSGTQLFDHVADCLGDFMEKKKIKDKKLP-----VGFTFSFPCRQ 160
Query: 183 TSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIG-LDMRVAALVNDTIGTLAGGRYH 241
+ I LI WTK F G DVV L KA+++ G D + A+VNDT+GT+ Y
Sbjct: 161 SKIDEAVLITWTKRFKASGVEGADVVKLLNKAIKKRGDYDANIVAVVNDTVGTMMTCGYD 220
Query: 242 NKDAIAAVILGTGTNAAYVERAHAIPKWHG 271
++ +I+GTGTNA Y+E I G
Sbjct: 221 DQQCEVGLIIGTGTNACYMEELRHIDLVEG 250
>pdb|1CZA|N Chain N, Mutant Monomer Of Recombinant Human Hexokinase Type I
Complexed With Glucose, Glucose-6-Phosphate, And Adp
Length = 917
Score = 156 bits (394), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 124/220 (56%), Gaps = 8/220 (3%)
Query: 55 LRQVADAMTVEMHAGL--ASEGGSKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRV 112
L +V M EM GL + + +KML S+V P G E G F ALDLGGTNFRVL V
Sbjct: 484 LLEVKKRMRAEMELGLRKQTHNNAVVKMLPSFVRRTPDGTENGDFLALDLGGTNFRVLLV 543
Query: 113 QLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQREL 172
++ + R V+ + +IP +M G+ ELFD+I + ++ F+ G G + L
Sbjct: 544 KIRSGKKRTVEMHNKIYAIPIEIMQGTGEELFDHIVSCISDFLDYMG-----IKGPRMPL 598
Query: 173 GFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERI-GLDMRVAALVNDT 231
GFTFSFP +QTS+ +G LI WTKGF D VG DVV L A++R D+ V A+VNDT
Sbjct: 599 GFTFSFPCQQTSLDAGILITWTKGFKATDCVGHDVVTLLRDAIKRREEFDLDVVAVVNDT 658
Query: 232 IGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWHG 271
+GT+ Y +I+GTG+NA Y+E + G
Sbjct: 659 VGTMMTCAYEEPTCEVGLIVGTGSNACYMEEMKNVEMVEG 698
Score = 142 bits (358), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 119/210 (56%), Gaps = 8/210 (3%)
Query: 65 EMHAGLASEGG--SKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVV 122
EM GL+ + + +KML ++V ++P G EKG F ALDLGG++FR+LRVQ+ + + V
Sbjct: 46 EMKNGLSRDFNPTATVKMLPTFVRSIPDGSEKGDFIALDLGGSSFRILRVQVNHEKNQNV 105
Query: 123 KQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQ 182
E E P +++ GS +LFD++A L F+ ++ +GFTFSFP +Q
Sbjct: 106 HMESEVYDTPENIVHGSGSQLFDHVAECLGDFMEKRK-----IKDKKLPVGFTFSFPCQQ 160
Query: 183 TSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIG-LDMRVAALVNDTIGTLAGGRYH 241
+ I LI WTK F G DVV L KA+++ G D + A+VNDT+GT+ Y
Sbjct: 161 SKIDEAILITWTKRFKASGVEGADVVKLLNKAIKKRGDYDANIVAVVNDTVGTMMTCGYD 220
Query: 242 NKDAIAAVILGTGTNAAYVERAHAIPKWHG 271
++ +I+GTGTNA Y+E I G
Sbjct: 221 DQHCEVGLIIGTGTNACYMEELRHIDLVEG 250
>pdb|1HKC|A Chain A, Recombinant Human Hexokinase Type I Complexed With Glucose
And Phosphate
pdb|1QHA|A Chain A, Human Hexokinase Type I Complexed With Atp Analogue
Amp-Pnp
pdb|1QHA|B Chain B, Human Hexokinase Type I Complexed With Atp Analogue
Amp-Pnp
Length = 917
Score = 156 bits (394), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 124/220 (56%), Gaps = 8/220 (3%)
Query: 55 LRQVADAMTVEMHAGL--ASEGGSKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRV 112
L +V M EM GL + + +KML S+V P G E G F ALDLGGTNFRVL V
Sbjct: 484 LLEVKKRMRAEMELGLRKQTHNNAVVKMLPSFVRRTPDGTENGDFLALDLGGTNFRVLLV 543
Query: 113 QLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQREL 172
++ + R V+ + +IP +M G+ ELFD+I + ++ F+ G G + L
Sbjct: 544 KIRSGKKRTVEMHNKIYAIPIEIMQGTGEELFDHIVSCISDFLDYMG-----IKGPRMPL 598
Query: 173 GFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERI-GLDMRVAALVNDT 231
GFTFSFP +QTS+ +G LI WTKGF D VG DVV L A++R D+ V A+VNDT
Sbjct: 599 GFTFSFPCQQTSLDAGILITWTKGFKATDCVGHDVVTLLRDAIKRREEFDLDVVAVVNDT 658
Query: 232 IGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWHG 271
+GT+ Y +I+GTG+NA Y+E + G
Sbjct: 659 VGTMMTCAYEEPTCEVGLIVGTGSNACYMEEMKNVEMVEG 698
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 119/210 (56%), Gaps = 8/210 (3%)
Query: 65 EMHAGLASEGG--SKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVV 122
EM GL+ + + +KML ++V ++P G EKG F ALDLGG++FR+LRVQ+ + + V
Sbjct: 46 EMKNGLSRDFNPTATVKMLPTFVRSIPDGSEKGDFIALDLGGSSFRILRVQVNHEKNQNV 105
Query: 123 KQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQ 182
E E P +++ GS +LFD++A L F+ ++ +GFTFSFP +Q
Sbjct: 106 HMESEVYDTPENIVHGSGSQLFDHVAECLGDFMEKRK-----IKDKKLPVGFTFSFPCQQ 160
Query: 183 TSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIG-LDMRVAALVNDTIGTLAGGRYH 241
+ I LI WTK F G DVV L KA+++ G D + A+VNDT+GT+ Y
Sbjct: 161 SKIDEAILITWTKRFKASGVEGADVVKLLNKAIKKRGDYDANIVAVVNDTVGTMMTCGYD 220
Query: 242 NKDAIAAVILGTGTNAAYVERAHAIPKWHG 271
++ +I+GTGTNA Y+E I G
Sbjct: 221 DQHCEVGLIIGTGTNACYMEELRHIDLVEG 250
>pdb|1HKB|A Chain A, Crystal Structure Of Recombinant Human Brain Hexokinase
Type I Complexed With Glucose And Glucose-6-Phosphate
pdb|1HKB|B Chain B, Crystal Structure Of Recombinant Human Brain Hexokinase
Type I Complexed With Glucose And Glucose-6-Phosphate
Length = 917
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 124/220 (56%), Gaps = 8/220 (3%)
Query: 55 LRQVADAMTVEMHAGL--ASEGGSKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRV 112
L +V M EM GL + + +KML S+V P G E G F ALDLGGTNFRVL V
Sbjct: 484 LLEVKKRMRAEMELGLRKQTHNNAVVKMLPSFVRRTPDGTENGDFLALDLGGTNFRVLLV 543
Query: 113 QLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQREL 172
++ + R V+ + +IP +M G+ ELFD+I + ++ F+ G G + L
Sbjct: 544 KIRSGKKRTVEMHNKIYAIPIEIMQGTGEELFDHIVSCISDFLDYMG-----IKGPRMPL 598
Query: 173 GFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERI-GLDMRVAALVNDT 231
GFTFSFP +QTS+ +G LI WTKGF D VG DVV L A++R D+ V A+VNDT
Sbjct: 599 GFTFSFPCQQTSLDAGILITWTKGFKATDCVGHDVVTLLRDAIKRREEFDLDVVAVVNDT 658
Query: 232 IGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWHG 271
+GT+ Y +I+GTG+NA Y+E + G
Sbjct: 659 VGTMMTCAYEEPTCEVGLIVGTGSNACYMEEMKNVEMVEG 698
Score = 142 bits (358), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 119/210 (56%), Gaps = 8/210 (3%)
Query: 65 EMHAGLASEGG--SKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVV 122
EM GL+ + + +KML ++V ++P G EKG F ALDLGG++FR+LRVQ+ + + V
Sbjct: 46 EMKNGLSRDFNPTATVKMLPTFVRSIPDGSEKGDFIALDLGGSSFRILRVQVNHEKNQNV 105
Query: 123 KQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQ 182
E E P +++ GS +LFD++A L F+ ++ +GFTFSFP +Q
Sbjct: 106 HMESEVYDTPENIVHGSGSQLFDHVAECLGDFMEKRK-----IKDKKLPVGFTFSFPCQQ 160
Query: 183 TSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIG-LDMRVAALVNDTIGTLAGGRYH 241
+ I LI WTK F G DVV L KA+++ G D + A+VNDT+GT+ Y
Sbjct: 161 SKIDEAILITWTKRFKASGVEGADVVKLLNKAIKKRGDYDANIVAVVNDTVGTMMTCGYD 220
Query: 242 NKDAIAAVILGTGTNAAYVERAHAIPKWHG 271
++ +I+GTGTNA Y+E I G
Sbjct: 221 DQHCEVGLIIGTGTNACYMEELRHIDLVEG 250
>pdb|1DGK|N Chain N, Mutant Monomer Of Recombinant Human Hexokinase Type I With
Glucose And Adp In The Active Site
Length = 917
Score = 154 bits (389), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 90/220 (40%), Positives = 123/220 (55%), Gaps = 8/220 (3%)
Query: 55 LRQVADAMTVEMHAGL--ASEGGSKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRV 112
L +V M EM GL + + +KML S+V P G E G F ALDLGG NFRVL V
Sbjct: 484 LLEVKKRMRAEMELGLRKQTHNNAVVKMLPSFVRRTPDGTENGDFLALDLGGANFRVLLV 543
Query: 113 QLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQREL 172
++ + R V+ + +IP +M G+ ELFD+I + ++ F+ G G + L
Sbjct: 544 KIRSGKKRTVEMHNKIYAIPIEIMQGTGEELFDHIVSCISDFLDYMG-----IKGPRMPL 598
Query: 173 GFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERI-GLDMRVAALVNDT 231
GFTFSFP +QTS+ +G LI WTKGF D VG DVV L A++R D+ V A+VNDT
Sbjct: 599 GFTFSFPCQQTSLDAGILITWTKGFKATDCVGHDVVTLLRDAIKRREEFDLDVVAVVNDT 658
Query: 232 IGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWHG 271
+GT+ Y +I+GTG+NA Y+E + G
Sbjct: 659 VGTMMTCAYEEPTCEVGLIVGTGSNACYMEEMKNVEMVEG 698
Score = 142 bits (358), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 119/210 (56%), Gaps = 8/210 (3%)
Query: 65 EMHAGLASEGG--SKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVV 122
EM GL+ + + +KML ++V ++P G EKG F ALDLGG++FR+LRVQ+ + + V
Sbjct: 46 EMKNGLSRDFNPTATVKMLPTFVRSIPDGSEKGDFIALDLGGSSFRILRVQVNHEKNQNV 105
Query: 123 KQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQ 182
E E P +++ GS +LFD++A L F+ ++ +GFTFSFP +Q
Sbjct: 106 HMESEVYDTPENIVHGSGSQLFDHVAECLGDFMEKRK-----IKDKKLPVGFTFSFPCQQ 160
Query: 183 TSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIG-LDMRVAALVNDTIGTLAGGRYH 241
+ I LI WTK F G DVV L KA+++ G D + A+VNDT+GT+ Y
Sbjct: 161 SKIDEAILITWTKRFKASGVEGADVVKLLNKAIKKRGDYDANIVAVVNDTVGTMMTCGYD 220
Query: 242 NKDAIAAVILGTGTNAAYVERAHAIPKWHG 271
++ +I+GTGTNA Y+E I G
Sbjct: 221 DQHCEVGLIIGTGTNACYMEELRHIDLVEG 250
>pdb|4DCH|A Chain A, Insights Into Glucokinase Activation Mechanism:
Observation Of Multiple Distinct Protein Conformations
Length = 473
Score = 153 bits (387), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 125/217 (57%), Gaps = 10/217 (4%)
Query: 55 LRQVADAMTVEMHAGLASEGGSK--LKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRV 112
L++V M EM GL E + +KML +YV + P G E G F +LDLGGTNFRV+ V
Sbjct: 30 LKKVMRRMQKEMDRGLRLETHEEASVKMLPTYVRSTPEGSEVGDFLSLDLGGTNFRVMLV 89
Query: 113 QLG-GREGR-VVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQR 170
++G G EG+ VK + + SIP MTG++ LFDYI+ ++ F+ H ++
Sbjct: 90 KVGEGEEGQWSVKTKHQMYSIPEDAMTGTAEMLFDYISECISDFLDK-----HQMKHKKL 144
Query: 171 ELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIG-LDMRVAALVN 229
LGFTFSFPVR I G L+ WTKGF G +VVG L A++R G +M V A+VN
Sbjct: 145 PLGFTFSFPVRHEDIDKGILLNWTKGFKASGAEGNNVVGLLRDAIKRRGDFEMDVVAMVN 204
Query: 230 DTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAI 266
DT+ T+ Y + +I+GTG NA Y+E +
Sbjct: 205 DTVATMISCYYEDHQCEVGMIVGTGCNACYMEEMQNV 241
>pdb|3QIC|A Chain A, The Structure Of Human Glucokinase E339k Mutation
Length = 470
Score = 153 bits (387), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 125/217 (57%), Gaps = 10/217 (4%)
Query: 55 LRQVADAMTVEMHAGLASEGGSK--LKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRV 112
L++V M EM GL E + +KML +YV + P G E G F +LDLGGTNFRV+ V
Sbjct: 35 LKKVMRRMQKEMDRGLRLETHEEASVKMLPTYVRSTPEGSEVGDFLSLDLGGTNFRVMLV 94
Query: 113 QLG-GREGR-VVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQR 170
++G G EG+ VK + + SIP MTG++ LFDYI+ ++ F+ H ++
Sbjct: 95 KVGEGEEGQWSVKTKHQMYSIPEDAMTGTAEMLFDYISECISDFLDK-----HQMKHKKL 149
Query: 171 ELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIG-LDMRVAALVN 229
LGFTFSFPVR I G L+ WTKGF G +VVG L A++R G +M V A+VN
Sbjct: 150 PLGFTFSFPVRHEDIDKGILLNWTKGFKASGAEGNNVVGLLRDAIKRRGDFEMDVVAMVN 209
Query: 230 DTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAI 266
DT+ T+ Y + +I+GTG NA Y+E +
Sbjct: 210 DTVATMISCYYEDHQCEVGMIVGTGCNACYMEEMQNV 246
>pdb|3F9M|A Chain A, Human Pancreatic Glucokinase In Complex With Glucose And
Activator Showing A Mobile Flap
pdb|3FGU|A Chain A, Catalytic Complex Of Human Glucokinase
pdb|3ID8|A Chain A, Ternary Complex Of Human Pancreatic Glucokinase
Crystallized With Activator, Glucose And Amp-Pnp
pdb|3IDH|A Chain A, Human Pancreatic Glucokinase In Complex With Glucose
pdb|3VEV|A Chain A, Glucokinase In Complex With An Activator And Glucose
pdb|3VF6|A Chain A, Glucokinase In Complex With Glucose And Activator
Length = 470
Score = 153 bits (387), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 125/217 (57%), Gaps = 10/217 (4%)
Query: 55 LRQVADAMTVEMHAGLASEGGSK--LKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRV 112
L++V M EM GL E + +KML +YV + P G E G F +LDLGGTNFRV+ V
Sbjct: 35 LKKVMRRMQKEMDRGLRLETHEEASVKMLPTYVRSTPEGSEVGDFLSLDLGGTNFRVMLV 94
Query: 113 QLG-GREGR-VVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQR 170
++G G EG+ VK + + SIP MTG++ LFDYI+ ++ F+ H ++
Sbjct: 95 KVGEGEEGQWSVKTKHQMYSIPEDAMTGTAEMLFDYISECISDFLDK-----HQMKHKKL 149
Query: 171 ELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIG-LDMRVAALVN 229
LGFTFSFPVR I G L+ WTKGF G +VVG L A++R G +M V A+VN
Sbjct: 150 PLGFTFSFPVRHEDIDKGILLNWTKGFKASGAEGNNVVGLLRDAIKRRGDFEMDVVAMVN 209
Query: 230 DTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAI 266
DT+ T+ Y + +I+GTG NA Y+E +
Sbjct: 210 DTVATMISCYYEDHQCEVGMIVGTGCNACYMEEMQNV 246
>pdb|1V4S|A Chain A, Crystal Structure Of Human Glucokinase
pdb|3VEY|A Chain A, Glucokinase In Complex With Glucose And Atpgs
Length = 455
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 126/222 (56%), Gaps = 10/222 (4%)
Query: 55 LRQVADAMTVEMHAGLASEGGSK--LKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRV 112
L++V M EM GL E + +KML +YV + P G E G F +LDLGGTNFRV+ V
Sbjct: 20 LKKVMRRMQKEMDRGLRLETHEEASVKMLPTYVRSTPEGSEVGDFLSLDLGGTNFRVMLV 79
Query: 113 QLG-GREGR-VVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQR 170
++G G EG+ VK + + SIP MTG++ LFDYI+ ++ F+ H ++
Sbjct: 80 KVGEGEEGQWSVKTKHQMYSIPEDAMTGTAEMLFDYISECISDFLDK-----HQMKHKKL 134
Query: 171 ELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIG-LDMRVAALVN 229
LGFTFSFPVR I G L+ WTKGF G +VVG L A++R G +M V A+VN
Sbjct: 135 PLGFTFSFPVRHEDIDKGILLNWTKGFKASGAEGNNVVGLLRDAIKRRGDFEMDVVAMVN 194
Query: 230 DTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWHG 271
DT+ T+ Y + +I+GTG NA Y+E + G
Sbjct: 195 DTVATMISCYYEDHQCEVGMIVGTGCNACYMEEMQNVELVEG 236
>pdb|3S41|A Chain A, Glucokinase In Complex With Activator And Glucose
pdb|4DHY|A Chain A, Crystal Structure Of Human Glucokinase In Complex With
Glucose And Activator
Length = 469
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 125/217 (57%), Gaps = 10/217 (4%)
Query: 55 LRQVADAMTVEMHAGLASEGGSK--LKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRV 112
L++V M EM GL E + +KML +YV + P G E G F +LDLGGTNFRV+ V
Sbjct: 34 LKKVMRRMQKEMDRGLRLETHEEASVKMLPTYVRSTPEGSEVGDFLSLDLGGTNFRVMLV 93
Query: 113 QLG-GREGR-VVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQR 170
++G G EG+ VK + + SIP MTG++ LFDYI+ ++ F+ H ++
Sbjct: 94 KVGEGEEGQWSVKTKHQMYSIPEDAMTGTAEMLFDYISECISDFLDK-----HQMKHKKL 148
Query: 171 ELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIG-LDMRVAALVN 229
LGFTFSFPVR I G L+ WTKGF G +VVG L A++R G +M V A+VN
Sbjct: 149 PLGFTFSFPVRHEDIDKGILLNWTKGFKASGAEGNNVVGLLRDAIKRRGDFEMDVVAMVN 208
Query: 230 DTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAI 266
DT+ T+ Y + +I+GTG NA Y+E +
Sbjct: 209 DTVATMISCYYEDHQCEVGMIVGTGCNACYMEEMQNV 245
>pdb|1V4T|A Chain A, Crystal Structure Of Human Glucokinase
pdb|3H1V|X Chain X, Human Glucokinase In Complex With A Synthetic Activator
Length = 451
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 125/217 (57%), Gaps = 10/217 (4%)
Query: 55 LRQVADAMTVEMHAGLASEGGSK--LKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRV 112
L++V M EM GL E + +KML +YV + P G E G F +LDLGGTNFRV+ V
Sbjct: 16 LKKVMRRMQKEMDRGLRLETHEEASVKMLPTYVRSTPEGSEVGDFLSLDLGGTNFRVMLV 75
Query: 113 QLG-GREGR-VVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQR 170
++G G EG+ VK + + SIP MTG++ LFDYI+ ++ F+ H ++
Sbjct: 76 KVGEGEEGQWSVKTKHQMYSIPEDAMTGTAEMLFDYISECISDFLDK-----HQMKHKKL 130
Query: 171 ELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIG-LDMRVAALVN 229
LGFTFSFPVR I G L+ WTKGF G +VVG L A++R G +M V A+VN
Sbjct: 131 PLGFTFSFPVRHEDIDKGILLNWTKGFKASGAEGNNVVGLLRDAIKRRGDFEMDVVAMVN 190
Query: 230 DTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAI 266
DT+ T+ Y + +I+GTG NA Y+E +
Sbjct: 191 DTVATMISCYYEDHQCEVGMIVGTGCNACYMEEMQNV 227
>pdb|3FR0|A Chain A, Human Glucokinase In Complex With 2-Amino Benzamide
Activator
pdb|3A0I|X Chain X, Human Glucokinase In Complex With A Synthetic Activator
pdb|3GOI|A Chain A, Human Glucokinase In Complex With A Synthetic Activator
Length = 455
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 125/217 (57%), Gaps = 10/217 (4%)
Query: 55 LRQVADAMTVEMHAGLASEGGSK--LKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRV 112
L++V M EM GL E + +KML +YV + P G E G F +LDLGGTNFRV+ V
Sbjct: 20 LKKVMRRMQKEMDRGLRLETHEEASVKMLPTYVRSTPEGSEVGDFLSLDLGGTNFRVMLV 79
Query: 113 QLG-GREGR-VVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQR 170
++G G EG+ VK + + SIP MTG++ LFDYI+ ++ F+ H ++
Sbjct: 80 KVGEGEEGQWSVKTKHQMYSIPEDAMTGTAEMLFDYISECISDFLDK-----HQMKHKKL 134
Query: 171 ELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIG-LDMRVAALVN 229
LGFTFSFPVR I G L+ WTKGF G +VVG L A++R G +M V A+VN
Sbjct: 135 PLGFTFSFPVRHEDIDKGILLNWTKGFKASGAEGNNVVGLLRDAIKRRGDFEMDVVAMVN 194
Query: 230 DTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAI 266
DT+ T+ Y + +I+GTG NA Y+E +
Sbjct: 195 DTVATMISCYYEDHQCEVGMIVGTGCNACYMEEMQNV 231
>pdb|3IMX|A Chain A, Crystal Structure Of Human Glucokinase In Complex With A
Synthetic Activator
Length = 455
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 125/217 (57%), Gaps = 10/217 (4%)
Query: 55 LRQVADAMTVEMHAGLASEGGSK--LKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRV 112
L++V M EM GL E + +KML +YV + P G E G F +LDLGGTNFRV+ V
Sbjct: 20 LKKVMRRMQKEMDRGLRLETHEEASVKMLPTYVRSTPEGSEVGDFLSLDLGGTNFRVMLV 79
Query: 113 QLG-GREGR-VVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQR 170
++G G EG+ VK + + SIP MTG++ LFDYI+ ++ F+ H ++
Sbjct: 80 KVGEGEEGQWSVKTKHQMYSIPEDAMTGTAEMLFDYISECISDFLDK-----HQMKHKKL 134
Query: 171 ELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIG-LDMRVAALVN 229
LGFTFSFPVR I G L+ WTKGF G +VVG L A++R G +M V A+VN
Sbjct: 135 PLGFTFSFPVRHEDIDKGILLNWTKGFKASGAEGNNVVGLLRDAIKRRGDFEMDVVAMVN 194
Query: 230 DTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAI 266
DT+ T+ Y + +I+GTG NA Y+E +
Sbjct: 195 DTVATMISCYYEDHQCEVGMIVGTGCNACYMEEMQNV 231
>pdb|1BDG|A Chain A, Hexokinase From Schistosoma Mansoni Complexed With Glucose
Length = 451
Score = 151 bits (382), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 89/241 (36%), Positives = 128/241 (53%), Gaps = 12/241 (4%)
Query: 34 WARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGL--ASEGGSKLKMLISYVDNLPTG 91
+ + V ILK + + ++ D M M GL ++ S +KM SYV P G
Sbjct: 9 FEKVVEILKPFD----LSVVDYEEICDRMGESMRLGLQKSTNEKSSIKMFPSYVTKTPNG 64
Query: 92 DEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAAL 151
E G F ALDLGGTN+RVL V L G+ G+ + + IP M+GS ELF YIA L
Sbjct: 65 TETGNFLALDLGGTNYRVLSVTLEGK-GKSPRIQERTYCIPAEKMSGSGTELFKYIAETL 123
Query: 152 AKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGEL 211
A F+ G ++ +LGFTFSFP Q + L++WTKGFS + G +V L
Sbjct: 124 ADFLENNG-----MKDKKFDLGFTFSFPCVQKGLTHATLVRWTKGFSADGVEGHNVAELL 178
Query: 212 TKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWHG 271
+++ L+++ A+VNDT+GTLA + +I+GTGTN AY+E + + G
Sbjct: 179 QTELDKRELNVKCVAVVNDTVGTLASCALEDPKCAVGLIVGTGTNVAYIEDSSKVELMDG 238
Query: 272 L 272
+
Sbjct: 239 V 239
>pdb|2NZT|A Chain A, Crystal Structure Of Human Hexokinase Ii
pdb|2NZT|B Chain B, Crystal Structure Of Human Hexokinase Ii
Length = 902
Score = 148 bits (373), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 122/216 (56%), Gaps = 8/216 (3%)
Query: 54 KLRQVADAMTVEMHAGLASE--GGSKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLR 111
+L +V M VEM GL+ E + +KML +YV P G EKG F ALDLGGTNFRVL
Sbjct: 469 QLLEVKRRMKVEMERGLSKETHASAPVKMLPTYVCATPDGTEKGDFLALDLGGTNFRVLL 528
Query: 112 VQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRE 171
V++ + V+ + +IP +M G+ ELFD+I +A F+ G G
Sbjct: 529 VRVRNGKWGGVEMHNKIYAIPQEVMHGTGDELFDHIVQCIADFLEYMG-----MKGVSLP 583
Query: 172 LGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERI-GLDMRVAALVND 230
LGFTFSFP +Q S+ L+KWTKGF GEDVV L +A+ R D+ V A+VND
Sbjct: 584 LGFTFSFPCQQNSLDESILLKWTKGFKASGCEGEDVVTLLKEAIHRREEFDLDVVAVVND 643
Query: 231 TIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAI 266
T+GT+ + + +I+GTG+NA Y+E +
Sbjct: 644 TVGTMMTCGFEDPHCEVGLIVGTGSNACYMEEMRNV 679
Score = 144 bits (363), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 85/220 (38%), Positives = 124/220 (56%), Gaps = 8/220 (3%)
Query: 55 LRQVADAMTVEMHAGL--ASEGGSKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRV 112
L +++ EM GL + + +KML ++V + P G E G F ALDLGGTNFRVL V
Sbjct: 22 LLEISKRFRKEMEKGLGATTHPTAAVKMLPTFVRSTPDGTEHGEFLALDLGGTNFRVLWV 81
Query: 113 QLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQREL 172
++ + V+ E + +IP +M GS +LFD+IA LA F+ + + ++ L
Sbjct: 82 KVTDNGLQKVEMENQIYAIPEDIMRGSGTQLFDHIAECLANFM----DKLQIKD-KKLPL 136
Query: 173 GFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIG-LDMRVAALVNDT 231
GFTFSFP QT + L+ WTKGF G DVV + KA++R G D+ + A+VNDT
Sbjct: 137 GFTFSFPCHQTKLDESFLVSWTKGFKSSGVEGRDVVALIRKAIQRRGDFDIDIVAVVNDT 196
Query: 232 IGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWHG 271
+GT+ Y + + +I+GTG+NA Y+E I G
Sbjct: 197 VGTMMTCGYDDHNCEIGLIVGTGSNACYMEEMRHIDMVEG 236
>pdb|3HM8|A Chain A, Crystal Structure Of The C-Terminal Hexokinase Domain Of
Human Hk3
pdb|3HM8|B Chain B, Crystal Structure Of The C-Terminal Hexokinase Domain Of
Human Hk3
pdb|3HM8|C Chain C, Crystal Structure Of The C-Terminal Hexokinase Domain Of
Human Hk3
pdb|3HM8|D Chain D, Crystal Structure Of The C-Terminal Hexokinase Domain Of
Human Hk3
Length = 445
Score = 144 bits (362), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 121/230 (52%), Gaps = 18/230 (7%)
Query: 54 KLRQVADAMTVEMHAGLASEGGSKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVL--R 111
+L V M M GL E S L+ML ++V P G E+G F ALDLGGTNFRVL R
Sbjct: 19 QLAAVQAQMRKAMAKGLRGEA-SSLRMLPTFVRATPDGSERGDFLALDLGGTNFRVLLVR 77
Query: 112 VQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRE 171
V G V+ E SIP + GS +LFD+I + F +G G+
Sbjct: 78 VTTG------VQITSEIYSIPETVAQGSGQQLFDHIVDCIVDFQQKQG-----LSGQSLP 126
Query: 172 LGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAM-ERIGLDMRVAALVND 230
LGFTFSFP RQ + G L+ WTKGF D G+DVV L +A+ R +++ V A+VND
Sbjct: 127 LGFTFSFPCRQLGLDQGILLNWTKGFKASDCEGQDVVSLLREAITRRQAVELNVVAIVND 186
Query: 231 TIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMV 280
T+GT+ Y + +I+GTGTNA Y+E + G SG M
Sbjct: 187 TVGTMMSCGYEDPRCEIGLIVGTGTNACYMEELRNVAGVPG---DSGRMC 233
>pdb|1IG8|A Chain A, Crystal Structure Of Yeast Hexokinase Pii With The Correct
Amino Acid Sequence
Length = 486
Score = 140 bits (354), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 89/244 (36%), Positives = 123/244 (50%), Gaps = 11/244 (4%)
Query: 41 LKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKMLISYVDNLPTGDEKGLFYAL 100
++ E+ P L+ V E+ GL+ +GG+ + M+ +V + PTG E G F A+
Sbjct: 27 IENFEKIFTVPTETLQAVTKHFISELEKGLSKKGGN-IPMIPGWVMDFPTGKESGDFLAI 85
Query: 101 DLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHL-MTGSSHELFDYIAAALAKFVATEG 159
DLGGTN RV+ V+LGG R + +P + T + EL+++IA +L F+
Sbjct: 86 DLGGTNLRVVLVKLGG--DRTFDTTQSKYRLPDAMRTTQNPDELWEFIADSLKAFI---D 140
Query: 160 EGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIG 219
E F LGFTFSFP Q I G L +WTKGF I + DVV L K + +
Sbjct: 141 EQFPQGISEPIPLGFTFSFPASQNKINEGILQRWTKGFDIPNIENHDVVPMLQKQITKRN 200
Query: 220 LDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWHGLL----PK 275
+ + V AL+NDT GTL Y + + VI GTG N AY + I K G L P
Sbjct: 201 IPIEVVALINDTTGTLVASYYTDPETKMGVIFGTGVNGAYYDVCSDIEKLQGKLSDDIPP 260
Query: 276 SGEM 279
S M
Sbjct: 261 SAPM 264
>pdb|3B8A|X Chain X, Crystal Structure Of Yeast Hexokinase Pi In Complex With
Glucose
Length = 485
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/221 (37%), Positives = 116/221 (52%), Gaps = 9/221 (4%)
Query: 55 LRQVADAMTVEMHAGLASEGGSKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQL 114
LR+V E++ GL +GG+ + M+ +V PTG E G + A+DLGGTN RV+ V+L
Sbjct: 41 LRKVVKHFIDELNKGLTKKGGN-IPMIPGWVMEFPTGKESGNYLAIDLGGTNLRVVLVKL 99
Query: 115 GGREGRVVKQEFEEVSIPPHLMTGSSH--ELFDYIAAALAKFVATEGEGFHVSPGRQREL 172
G Q ++ PH M + H EL+ +IA +L F+ E ++ L
Sbjct: 100 SGNHTFDTTQSKYKL---PHDMRTTKHQEELWSFIADSLKDFMV---EQELLNTKDTLPL 153
Query: 173 GFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTI 232
GFTFS+P Q I G L +WTKGF I + G DVV L + + L + + AL+NDT+
Sbjct: 154 GFTFSYPASQNKINEGILQRWTKGFDIPNVEGHDVVPLLQNEISKRELPIEIVALINDTV 213
Query: 233 GTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWHGLL 273
GTL Y + + VI GTG N A+ + I K G L
Sbjct: 214 GTLIASYYTDPETKMGVIFGTGVNGAFYDVVSDIEKLEGKL 254
>pdb|2YHX|A Chain A, Sequencing A Protein By X-Ray Crystallography. Ii.
Refinement Of Yeast Hexokinase B Co-Ordinates And
Sequence At 2.1 Angstroms Resolution
Length = 457
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 66/188 (35%), Gaps = 20/188 (10%)
Query: 78 LKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLGGRE------GRVVKQEFEEVSI 131
+ M+ +V +G + G F A+ +GG + V+ + L GR+ R + +I
Sbjct: 44 IPMVPGWVLKQVSGAQAGSFLAIVMGGGDLEVILISLAGRQESSIXASRSLAAAMSTTAI 103
Query: 132 PPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLI 191
P L + A S LGFTF + + G +
Sbjct: 104 PSDLWGNXAXS------------NAAFSSXEFSSXAGSVPLGFTFXEAGAKEXVIKGQIT 151
Query: 192 KWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVIL 251
FS+ ++ + A G A + D+ G L Y + +I
Sbjct: 152 XQAXAFSLAXL--XKLISAMXNAXFPAGDXXXSVADIXDSHGILXXVNYTDAXIKMGIIF 209
Query: 252 GTGTNAAY 259
G+G NAAY
Sbjct: 210 GSGVNAAY 217
>pdb|3IV7|A Chain A, Crystal Structure Of Iron-Containing Alcohol Dehydrogenase
(Np_602249.1) From Corynebacterium Glutamicum Atcc 13032
Kitasato At 2.07 A Resolution
pdb|3IV7|B Chain B, Crystal Structure Of Iron-Containing Alcohol Dehydrogenase
(Np_602249.1) From Corynebacterium Glutamicum Atcc 13032
Kitasato At 2.07 A Resolution
Length = 364
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Query: 94 KGLFYALD-LGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALA 152
GL + +D L G N + L R + Q ++ PH + G L+ AA++
Sbjct: 173 NGLAHCIDSLWGPNADPINAVLAAEGIRALNQGLPKIVANPHSIEGRDEALYGAYLAAVS 232
Query: 153 KFVATEGEGFHVSPGRQRELGFTFSFPVRQT 183
A+ G G H LG TF+ P QT
Sbjct: 233 --FASAGSGLHHK--ICHTLGGTFNLPHAQT 259
>pdb|1WDI|A Chain A, Crystal Structure Of Tt0907 From Thermus Thermophilus Hb8
Length = 345
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 13/109 (11%)
Query: 75 GSKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVVK--QEFEEVSIP 132
G++L +L+S D P + A++ G R+LR Q G +V +E EV +P
Sbjct: 106 GTRL-LLLSPKDLAPVPGLQAEVVAVEEDGV--RLLRFQ-----GDLVAHLEEVGEVPLP 157
Query: 133 PHLMTGSSHELFDYIAAALAKFVATEGEGFHVSP---GRQRELGFTFSF 178
P++ E + + A VA G H +P R RE+G F
Sbjct: 158 PYIKAKIPMERYQTVYARRPGSVAAPTAGLHFTPELLERLREMGVELRF 206
>pdb|1HKG|A Chain A, Structural Dynamics Of Yeast Hexokinase During Catalysis
Length = 457
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 64/188 (34%), Gaps = 20/188 (10%)
Query: 78 LKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLGGRE------GRVVKQEFEEVSI 131
+ M+ +V G + G F A+ +GG + V+ + L G + R + +I
Sbjct: 44 IPMVPGWVLKQVXGSQAGSFLAIVMGGGDLEVILIXLAGYQESSIXASRSLAASMXTTAI 103
Query: 132 PPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLI 191
P L A A S LGFTF + + G +
Sbjct: 104 PSDLWGNX------------AXSNAAFSSXEFSSXAGSVPLGFTFXEAGAKEXVIKGQIT 151
Query: 192 KWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVIL 251
FS+ ++ + A G A + D+ G L Y + +I
Sbjct: 152 XQAXAFSLAXL--XKLISAMXNAXFPAGDXXXXVADIXDSHGILXXVNYTDAXIKMGIIF 209
Query: 252 GTGTNAAY 259
G+G NAAY
Sbjct: 210 GSGVNAAY 217
>pdb|3BS6|A Chain A, 1.8 Angstrom Crystal Structure Of The Periplasmic Domain
Of The Membrane Insertase Yidc
pdb|3BS6|B Chain B, 1.8 Angstrom Crystal Structure Of The Periplasmic Domain
Of The Membrane Insertase Yidc
Length = 280
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 62 MTVEMHAGLASEGGSKLKMLISYVDNLPTGDEKGLFYALDLG----GTNFRVLRVQLGGR 117
VE A + +EG ++L++ +Y D G+ + L G N+ V
Sbjct: 76 YNVEKDAYVLAEGQNELQVPXTYTD--AAGNTFTKTFVLKRGDYAVNVNYNVQNAGEKPL 133
Query: 118 EGRVVKQEFEEVSIPPHLMTGSSH 141
E Q + +++PPHL TGSS+
Sbjct: 134 EISSFGQLKQSITLPPHLDTGSSN 157
>pdb|4GA7|A Chain A, Crystal Structure Of Human Serpinb1 Mutant
pdb|4GA7|B Chain B, Crystal Structure Of Human Serpinb1 Mutant
Length = 389
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 210 ELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAA 258
+L+ A R LD+ +A N+ G + + A+A V LGT N A
Sbjct: 13 QLSSANTRFALDLFLALSENNPAGNIFISPFSISSAMAMVFLGTRGNTA 61
>pdb|3BLC|A Chain A, Crystal Structure Of The Periplasmic Domain Of The
Escherichia Coli Yidc
pdb|3BLC|B Chain B, Crystal Structure Of The Periplasmic Domain Of The
Escherichia Coli Yidc
Length = 330
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 63 TVEMHAGLASEGGSKLKMLISYVDNLPTGDEKGLFYALDLG----GTNFRVLRVQLGGRE 118
VE A + +EG ++L++ +Y D G+ + L G N+ V E
Sbjct: 108 NVEKDAYVLAEGQNELQVPXTYTDA--AGNTFTKTFVLKRGDYAVNVNYNVQNAGEKPLE 165
Query: 119 GRVVKQEFEEVSIPPHLMTGSSH 141
Q + +++PPHL TGSS+
Sbjct: 166 ISSFGQLKQSITLPPHLDTGSSN 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,059,358
Number of Sequences: 62578
Number of extensions: 341564
Number of successful extensions: 1020
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 934
Number of HSP's gapped (non-prelim): 39
length of query: 289
length of database: 14,973,337
effective HSP length: 98
effective length of query: 191
effective length of database: 8,840,693
effective search space: 1688572363
effective search space used: 1688572363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)