Query 022975
Match_columns 289
No_of_seqs 157 out of 791
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 07:31:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022975.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022975hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02405 hexokinase 100.0 1.5E-81 3.3E-86 617.3 28.8 287 1-287 1-287 (497)
2 PLN02362 hexokinase 100.0 2.7E-80 5.8E-85 609.9 28.2 287 1-287 1-287 (509)
3 PLN02596 hexokinase-like 100.0 7.3E-80 1.6E-84 604.0 27.6 284 1-286 2-286 (490)
4 PLN02914 hexokinase 100.0 1E-76 2.2E-81 581.8 28.0 254 34-287 34-287 (490)
5 KOG1369 Hexokinase [Carbohydra 100.0 8.7E-69 1.9E-73 519.6 24.6 250 31-286 21-272 (474)
6 PTZ00107 hexokinase; Provision 100.0 4.2E-68 9.1E-73 519.6 26.6 241 36-287 6-273 (464)
7 COG5026 Hexokinase [Carbohydra 100.0 2.9E-62 6.4E-67 464.2 23.8 250 33-287 13-264 (466)
8 PF00349 Hexokinase_1: Hexokin 100.0 1E-59 2.2E-64 417.9 22.4 202 36-242 2-206 (206)
9 PRK09698 D-allose kinase; Prov 99.6 1.2E-14 2.6E-19 135.0 16.6 164 94-283 3-169 (302)
10 PRK13311 N-acetyl-D-glucosamin 99.6 1.3E-14 2.8E-19 132.4 15.3 156 96-281 1-160 (256)
11 COG1940 NagC Transcriptional r 99.6 2.7E-14 5.8E-19 133.4 17.1 162 93-283 4-172 (314)
12 PRK13310 N-acetyl-D-glucosamin 99.6 1.7E-14 3.6E-19 134.3 14.7 157 97-283 2-162 (303)
13 TIGR00744 ROK_glcA_fam ROK fam 99.6 3.6E-14 7.8E-19 132.5 14.6 157 98-283 1-163 (318)
14 PF00480 ROK: ROK family; Int 99.5 4.7E-14 1E-18 121.0 11.0 154 99-284 1-158 (179)
15 PRK09557 fructokinase; Reviewe 99.5 1.1E-13 2.5E-18 128.7 14.5 156 97-282 2-161 (301)
16 PRK05082 N-acetylmannosamine k 99.5 1.7E-13 3.8E-18 126.7 14.8 154 97-284 3-162 (291)
17 PRK12408 glucokinase; Provisio 99.4 1.1E-12 2.4E-17 124.5 10.5 153 90-282 10-182 (336)
18 PRK00292 glk glucokinase; Prov 99.4 1.9E-12 4E-17 121.5 11.9 147 96-283 3-165 (316)
19 PRK14101 bifunctional glucokin 99.1 2.1E-10 4.6E-15 117.5 9.3 146 95-282 18-179 (638)
20 TIGR00749 glk glucokinase, pro 99.1 3.3E-10 7.1E-15 106.5 9.4 146 98-282 1-164 (316)
21 PTZ00288 glucokinase 1; Provis 98.9 4.3E-08 9.2E-13 95.6 16.3 184 59-282 5-222 (405)
22 smart00732 YqgFc Likely ribonu 98.7 3.8E-08 8.1E-13 76.4 7.2 98 96-237 2-99 (99)
23 PF01869 BcrAD_BadFG: BadF/Bad 97.7 0.00065 1.4E-08 62.2 12.9 128 98-266 1-128 (271)
24 KOG1794 N-Acetylglucosamine ki 97.5 0.0022 4.8E-08 59.8 13.5 142 94-268 2-144 (336)
25 PF02685 Glucokinase: Glucokin 97.5 0.00022 4.8E-09 67.6 6.3 134 98-264 1-148 (316)
26 PRK13318 pantothenate kinase; 97.4 0.00017 3.6E-09 66.2 4.3 132 97-263 2-143 (258)
27 PF00370 FGGY_N: FGGY family o 97.4 0.00095 2.1E-08 60.1 8.9 92 96-194 1-99 (245)
28 TIGR02707 butyr_kinase butyrat 97.3 0.0044 9.6E-08 59.6 13.1 161 96-275 1-205 (351)
29 TIGR01312 XylB D-xylulose kina 97.0 0.003 6.4E-08 62.4 8.9 76 98-180 1-81 (481)
30 TIGR01314 gntK_FGGY gluconate 96.7 0.0085 1.8E-07 59.9 9.1 61 96-159 1-64 (505)
31 TIGR01315 5C_CHO_kinase FGGY-f 96.6 0.0085 1.9E-07 60.6 9.0 73 97-176 2-77 (541)
32 TIGR01311 glycerol_kin glycero 96.6 0.0072 1.6E-07 60.3 8.4 62 96-160 2-66 (493)
33 COG2971 Predicted N-acetylgluc 96.6 0.033 7E-07 52.4 11.8 124 94-255 4-128 (301)
34 PRK13321 pantothenate kinase; 96.5 0.0025 5.4E-08 58.4 3.7 48 97-153 2-49 (256)
35 PRK00047 glpK glycerol kinase; 96.5 0.011 2.4E-07 59.0 8.5 62 96-160 6-70 (498)
36 PRK10939 autoinducer-2 (AI-2) 96.4 0.013 2.9E-07 58.8 8.7 62 96-160 4-70 (520)
37 TIGR01234 L-ribulokinase L-rib 96.4 0.013 2.9E-07 59.0 8.4 62 96-160 2-78 (536)
38 PRK15027 xylulokinase; Provisi 96.3 0.017 3.7E-07 57.4 8.9 71 96-175 1-74 (484)
39 PRK10331 L-fuculokinase; Provi 96.1 0.026 5.6E-07 56.0 8.7 60 96-158 3-67 (470)
40 COG0837 Glk Glucokinase [Carbo 96.1 0.041 8.9E-07 51.7 9.3 144 96-279 7-165 (320)
41 COG1070 XylB Sugar (pentulose 95.9 0.036 7.9E-07 55.6 8.7 63 95-159 4-69 (502)
42 PTZ00294 glycerol kinase-like 95.8 0.038 8.3E-07 55.3 8.5 61 96-159 3-66 (504)
43 PRK04123 ribulokinase; Provisi 95.6 0.055 1.2E-06 54.7 8.9 62 96-160 4-75 (548)
44 TIGR02628 fuculo_kin_coli L-fu 95.6 0.046 1E-06 54.1 8.2 59 96-157 2-65 (465)
45 PLN02295 glycerol kinase 95.4 0.058 1.3E-06 54.1 8.1 62 96-160 1-65 (512)
46 KOG2517 Ribulose kinase and re 94.5 0.29 6.2E-06 49.4 10.1 97 94-201 5-103 (516)
47 TIGR01174 ftsA cell division p 93.4 6.2 0.00013 37.8 16.8 57 205-263 157-216 (371)
48 TIGR00241 CoA_E_activ CoA-subs 92.6 0.44 9.6E-06 43.2 7.3 50 96-160 1-50 (248)
49 COG1069 AraB Ribulose kinase [ 92.3 0.57 1.2E-05 47.3 8.1 80 95-180 3-83 (544)
50 COG0554 GlpK Glycerol kinase [ 92.1 0.38 8.2E-06 48.0 6.5 88 94-195 4-92 (499)
51 PRK03011 butyrate kinase; Prov 92.0 1.5 3.3E-05 42.3 10.5 161 96-272 3-204 (358)
52 TIGR02627 rhamnulo_kin rhamnul 91.5 0.44 9.4E-06 47.1 6.3 59 98-156 1-63 (454)
53 PLN02669 xylulokinase 91.1 0.87 1.9E-05 46.4 8.3 63 87-155 3-81 (556)
54 TIGR01175 pilM type IV pilus a 91.1 2.2 4.8E-05 40.2 10.5 64 95-160 3-66 (348)
55 PRK15080 ethanolamine utilizat 89.2 6.5 0.00014 36.1 11.7 138 89-264 18-156 (267)
56 PRK13324 pantothenate kinase; 85.4 8.5 0.00018 35.5 10.0 46 97-151 2-48 (258)
57 smart00842 FtsA Cell division 84.5 13 0.00027 32.1 10.2 57 97-158 1-59 (187)
58 TIGR00671 baf pantothenate kin 83.4 25 0.00055 31.9 12.2 46 98-152 2-47 (243)
59 PRK13410 molecular chaperone D 82.9 3.3 7.2E-05 43.3 6.9 49 211-261 154-205 (668)
60 PTZ00009 heat shock 70 kDa pro 82.4 7.6 0.00016 40.4 9.3 49 211-261 159-212 (653)
61 PTZ00186 heat shock 70 kDa pre 81.3 6.6 0.00014 41.0 8.4 38 224-261 190-230 (657)
62 CHL00094 dnaK heat shock prote 78.9 5.4 0.00012 41.2 6.8 47 213-261 156-205 (621)
63 PTZ00400 DnaK-type molecular c 78.7 6 0.00013 41.3 7.1 47 213-261 195-244 (663)
64 PRK05183 hscA chaperone protei 75.4 5.8 0.00013 41.0 5.9 51 209-261 166-219 (616)
65 PRK13411 molecular chaperone D 74.7 14 0.0003 38.5 8.5 48 212-261 153-204 (653)
66 PRK00290 dnaK molecular chaper 74.5 5.2 0.00011 41.3 5.3 49 211-261 152-203 (627)
67 PF11104 PilM_2: Type IV pilus 74.1 17 0.00036 34.5 8.3 61 99-161 1-61 (340)
68 TIGR03286 methan_mark_15 putat 73.4 4.9 0.00011 39.5 4.5 24 90-113 139-162 (404)
69 TIGR00555 panK_eukar pantothen 73.0 9.2 0.0002 35.8 6.0 43 97-151 2-44 (279)
70 TIGR02529 EutJ ethanolamine ut 72.3 46 0.001 30.0 10.4 51 209-264 78-129 (239)
71 PRK13326 pantothenate kinase; 70.5 11 0.00024 34.8 6.0 45 96-149 7-51 (262)
72 PLN03184 chloroplast Hsp70; Pr 69.1 15 0.00033 38.4 7.3 38 224-261 202-242 (673)
73 PRK03657 hypothetical protein; 65.9 25 0.00055 30.5 6.9 58 47-105 70-135 (170)
74 TIGR00904 mreB cell shape dete 65.1 1.2E+02 0.0026 28.4 11.9 51 208-260 114-167 (333)
75 PF11215 DUF3010: Protein of u 64.0 21 0.00045 30.0 5.7 61 97-161 3-63 (138)
76 PRK13930 rod shape-determining 62.7 1.3E+02 0.0029 27.9 13.3 54 208-263 116-172 (335)
77 PRK01433 hscA chaperone protei 62.5 1E+02 0.0022 31.9 11.6 53 207-261 156-211 (595)
78 PRK13320 pantothenate kinase; 62.2 24 0.00051 32.2 6.3 17 97-113 4-20 (244)
79 PRK00109 Holliday junction res 61.7 48 0.001 27.5 7.6 23 94-116 3-25 (138)
80 cd00529 RuvC_resolvase Hollida 61.0 52 0.0011 27.6 7.8 60 96-160 1-60 (154)
81 PF03652 UPF0081: Uncharacteri 60.6 31 0.00067 28.5 6.2 102 96-240 2-105 (135)
82 TIGR03192 benz_CoA_bzdQ benzoy 60.1 56 0.0012 30.9 8.5 18 96-113 33-50 (293)
83 PRK13929 rod-share determining 60.0 1.6E+02 0.0034 27.8 14.1 50 209-260 115-167 (335)
84 PRK13317 pantothenate kinase; 58.2 9.1 0.0002 35.7 2.9 22 95-116 2-23 (277)
85 PF14574 DUF4445: Domain of un 57.9 55 0.0012 32.4 8.4 20 97-116 3-22 (412)
86 COG0443 DnaK Molecular chapero 57.4 1.2E+02 0.0026 31.3 11.1 52 208-261 136-190 (579)
87 TIGR01991 HscA Fe-S protein as 57.3 53 0.0011 33.9 8.6 49 211-261 148-199 (599)
88 PF05402 PqqD: Coenzyme PQQ sy 57.1 25 0.00055 24.8 4.6 35 34-68 29-63 (68)
89 PF05378 Hydant_A_N: Hydantoin 57.1 37 0.00081 29.3 6.4 49 98-158 2-50 (176)
90 PF02075 RuvC: Crossover junct 54.4 59 0.0013 27.3 7.0 60 97-161 1-60 (149)
91 COG0816 Predicted endonuclease 54.3 43 0.00092 28.2 6.1 22 95-116 2-23 (141)
92 TIGR03706 exo_poly_only exopol 53.4 60 0.0013 30.2 7.6 62 97-158 2-65 (300)
93 COG4972 PilM Tfp pilus assembl 52.4 52 0.0011 31.7 7.0 126 96-223 11-166 (354)
94 TIGR02259 benz_CoA_red_A benzo 52.1 19 0.00041 35.7 4.1 22 95-116 2-23 (432)
95 TIGR02261 benz_CoA_red_D benzo 51.2 1E+02 0.0022 28.7 8.5 22 96-117 2-23 (262)
96 PRK09472 ftsA cell division pr 50.9 2.5E+02 0.0054 27.5 17.9 55 207-263 167-224 (420)
97 COG3734 DgoK 2-keto-3-deoxy-ga 50.5 15 0.00032 34.7 2.9 24 94-117 4-27 (306)
98 TIGR03123 one_C_unchar_1 proba 46.9 17 0.00036 34.7 2.8 20 98-117 1-20 (318)
99 PF03309 Pan_kinase: Type III 46.3 54 0.0012 28.8 5.8 19 97-115 1-19 (206)
100 PRK10854 exopolyphosphatase; P 46.3 93 0.002 31.4 8.2 62 96-157 12-75 (513)
101 COG1521 Pantothenate kinase ty 44.2 59 0.0013 30.0 5.8 43 97-148 2-44 (251)
102 PF00012 HSP70: Hsp70 protein; 42.6 20 0.00043 36.3 2.8 53 207-261 150-206 (602)
103 TIGR03123 one_C_unchar_1 proba 39.2 22 0.00049 33.9 2.4 21 93-113 126-146 (318)
104 PRK00039 ruvC Holliday junctio 39.2 1.7E+02 0.0037 25.0 7.6 22 96-117 3-24 (164)
105 PRK11031 guanosine pentaphosph 39.0 1.5E+02 0.0033 29.8 8.4 63 95-157 6-70 (496)
106 COG1924 Activator of 2-hydroxy 38.0 1.4E+02 0.0029 29.5 7.4 25 92-116 132-156 (396)
107 PRK10753 transcriptional regul 38.0 84 0.0018 24.0 5.0 36 38-73 4-39 (90)
108 COG4820 EutJ Ethanolamine util 36.6 1.2E+02 0.0026 27.6 6.4 28 90-117 24-51 (277)
109 PRK00285 ihfA integration host 36.3 89 0.0019 24.0 5.0 37 37-73 5-41 (99)
110 TIGR00987 himA integration hos 36.1 91 0.002 23.9 5.0 36 38-73 5-40 (96)
111 PF01968 Hydantoinase_A: Hydan 35.1 38 0.00083 31.5 3.2 21 96-117 78-98 (290)
112 COG3894 Uncharacterized metal- 35.0 41 0.00089 34.2 3.5 38 227-265 311-348 (614)
113 PF00216 Bac_DNA_binding: Bact 34.1 98 0.0021 22.9 4.8 36 38-73 4-39 (90)
114 PRK03661 hypothetical protein; 34.0 1.6E+02 0.0035 25.2 6.6 56 47-103 64-127 (164)
115 smart00411 BHL bacterial (prok 33.8 1.1E+02 0.0024 22.8 5.1 36 38-73 4-39 (90)
116 TIGR00250 RNAse_H_YqgF RNAse H 33.8 1.4E+02 0.003 24.4 6.0 16 98-113 1-16 (130)
117 PRK13331 pantothenate kinase; 33.4 46 0.001 30.6 3.4 21 93-113 5-25 (251)
118 COG0145 HyuA N-methylhydantoin 33.0 36 0.00077 35.9 2.9 60 54-113 210-296 (674)
119 TIGR02350 prok_dnaK chaperone 33.0 38 0.00083 34.7 3.1 52 208-261 146-201 (595)
120 COG1546 CinA Uncharacterized p 32.8 2.4E+02 0.0051 24.4 7.4 68 48-117 65-140 (162)
121 PF01548 DEDD_Tnp_IS110: Trans 32.6 90 0.0019 25.2 4.7 45 97-150 1-45 (144)
122 PRK10664 transcriptional regul 31.7 1.3E+02 0.0027 23.1 5.1 36 39-74 5-40 (90)
123 PF14639 YqgF: Holliday-juncti 30.9 3E+02 0.0065 23.2 7.7 32 207-239 79-115 (150)
124 TIGR00199 cinA_cterm competenc 30.5 2.6E+02 0.0056 23.4 7.2 55 47-102 52-114 (146)
125 COG4071 Uncharacterized protei 30.0 56 0.0012 29.7 3.2 55 207-263 145-203 (278)
126 smart00268 ACTIN Actin. ACTIN 29.9 4.4E+02 0.0095 24.8 9.6 17 97-113 3-19 (373)
127 KOG3463 Transcription initiati 29.7 1.6E+02 0.0034 23.8 5.3 45 35-79 14-58 (109)
128 PF00012 HSP70: Hsp70 protein; 29.0 3.2E+02 0.007 27.5 9.0 25 93-117 186-210 (602)
129 PF13941 MutL: MutL protein 28.2 2.1E+02 0.0046 28.7 7.3 55 96-157 1-55 (457)
130 cd00591 HU_IHF Integration hos 28.2 1.4E+02 0.0031 21.9 4.8 35 38-72 3-37 (87)
131 PF14450 FtsA: Cell division p 27.9 60 0.0013 25.8 2.9 56 97-157 1-58 (120)
132 PRK05571 ribose-5-phosphate is 26.8 39 0.00084 28.7 1.6 66 201-268 8-81 (148)
133 PF02268 TFIIA_gamma_N: Transc 26.2 2.2E+02 0.0049 19.6 5.1 38 34-71 12-49 (49)
134 PF14142 YrzO: YrzO-like prote 26.1 48 0.001 22.0 1.6 32 13-45 11-42 (46)
135 PRK11678 putative chaperone; P 25.9 75 0.0016 31.7 3.7 53 97-151 2-54 (450)
136 CHL00094 dnaK heat shock prote 25.2 3.3E+02 0.0071 28.2 8.3 24 94-117 186-209 (621)
137 COG5146 PanK Pantothenate kina 24.9 1.3E+02 0.0027 28.1 4.6 141 97-266 20-167 (342)
138 cd00012 ACTIN Actin; An ubiqui 24.9 5.9E+02 0.013 24.0 10.0 34 221-259 123-156 (371)
139 PRK00199 ihfB integration host 24.8 1.9E+02 0.0042 21.9 5.1 36 38-73 4-40 (94)
140 PRK08621 galactose-6-phosphate 23.9 64 0.0014 27.2 2.4 60 201-262 8-74 (142)
141 PRK01742 tolB translocation pr 23.5 1.3E+02 0.0029 29.2 4.9 65 44-109 134-198 (429)
142 TIGR02350 prok_dnaK chaperone 23.5 3.1E+02 0.0066 28.1 7.7 24 94-117 182-205 (595)
143 PRK13322 pantothenate kinase; 23.5 73 0.0016 29.0 2.8 18 97-114 2-19 (246)
144 PRK13411 molecular chaperone D 23.4 3E+02 0.0064 28.8 7.6 25 93-117 184-208 (653)
145 KOG3127 Deoxycytidylate deamin 23.1 54 0.0012 29.8 1.8 26 232-257 73-106 (230)
146 PLN03184 chloroplast Hsp70; Pr 23.1 3.3E+02 0.0072 28.6 7.9 24 94-117 223-246 (673)
147 PRK05183 hscA chaperone protei 23.0 2.7E+02 0.0058 28.9 7.2 24 94-117 200-223 (616)
148 PTZ00186 heat shock 70 kDa pre 22.9 3.3E+02 0.0071 28.6 7.8 24 94-117 211-234 (657)
149 PRK13260 2,3-diketo-L-gulonate 22.8 1E+02 0.0022 29.5 3.8 56 34-92 5-60 (332)
150 PRK13717 conjugal transfer pro 22.8 87 0.0019 26.0 2.8 36 36-72 55-90 (128)
151 COG1548 Predicted transcriptio 22.5 71 0.0015 30.0 2.5 20 96-117 4-23 (330)
152 TIGR00988 hip integration host 22.5 2.3E+02 0.005 21.4 5.1 36 38-73 4-40 (94)
153 PTZ00009 heat shock 70 kDa pro 22.4 2.9E+02 0.0064 28.8 7.4 24 94-117 193-216 (653)
154 TIGR01118 lacA galactose-6-pho 22.1 67 0.0014 27.1 2.1 59 202-262 9-74 (141)
155 PF02615 Ldh_2: Malate/L-lacta 21.8 1E+02 0.0022 29.6 3.6 69 34-105 5-75 (335)
156 TIGR03175 AllD ureidoglycolate 21.5 1.1E+02 0.0024 29.6 3.7 56 34-92 5-60 (349)
157 TIGR01991 HscA Fe-S protein as 20.8 3.2E+02 0.0069 28.2 7.2 24 94-117 180-203 (599)
158 PRK04792 tolB translocation pr 20.5 2E+02 0.0043 28.3 5.5 63 46-109 150-212 (448)
159 COG2055 Malate/L-lactate dehyd 20.3 1.4E+02 0.0031 28.9 4.2 59 33-94 7-65 (349)
160 cd01817 RGS12_RBD Ubiquitin do 20.2 1.2E+02 0.0026 22.8 2.9 19 204-222 19-37 (73)
161 COG0248 GppA Exopolyphosphatas 20.2 2E+02 0.0043 29.2 5.4 63 96-158 4-68 (492)
162 PF09907 DUF2136: Uncharacteri 20.2 1.2E+02 0.0027 22.6 3.0 21 95-115 36-57 (76)
No 1
>PLN02405 hexokinase
Probab=100.00 E-value=1.5e-81 Score=617.29 Aligned_cols=287 Identities=86% Similarity=1.305 Sum_probs=265.6
Q ss_pred CCceeEEEeeeehhhhhhhhheeehhcccccccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCCCCccee
Q 022975 1 MGKVTVAATVVCAAAVCAAAALVVRRRMKSTGRWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKM 80 (289)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~~~M 80 (289)
|+|+.++++.+|++++|+++++++++++++..+|..+.+++++|+++|.+|.++|++|+++|..||++||++++.|+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~L~~v~~~f~~em~~GL~~~~~s~l~M 80 (497)
T PLN02405 1 MGKVAVGAAVVCAAAVCAAAALVVRRRMKSSGKWARAMEILKEFEEDCATPIGKLRQVADAMTVEMHAGLASEGGSKLKM 80 (497)
T ss_pred CCceeeehhhhhHHHHHHHHHHhhhcccccchhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhccCCCCCcce
Confidence 78877777778877778888889999988767788899999999999999999999999999999999999876688999
Q ss_pred eecccccCCCCcccccEEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCCcccCCchhHHHHHHHHHHHHHHhcCC
Q 022975 81 LISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGE 160 (289)
Q Consensus 81 lps~v~~lP~G~E~G~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~ 160 (289)
|||||+++|+|+|+|.|||||||||||||++|+|.|+++..+.+.+++++||++++.+++++||||||+||.+|+++++.
T Consensus 81 lpSyv~~lPtG~E~G~flAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~gt~~~LFdfIA~~i~~fl~~~~~ 160 (497)
T PLN02405 81 LISYVDNLPSGDEKGLFYALDLGGTNFRVLRVLLGGKDGRVVKQEFEEVSIPPHLMTGSSDALFDFIAAALAKFVATEGE 160 (497)
T ss_pred eccccccCCCCCcceeEEEEecCCceEEEEEEEEcCCCCceeEEEEEEeecChhhccCCHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999876666677778999999999999999999999999999998875
Q ss_pred CCCCCCCCeeeeeeeeeeeeeeccCCceEEEecccceeccCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHhhcccc
Q 022975 161 GFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRY 240 (289)
Q Consensus 161 ~~~~~~~~~~~lG~tfSfP~~q~~~~~~~Li~wtKgf~~~~~~g~dv~~~L~~al~r~~l~v~v~aivNDtvatlla~~y 240 (289)
+.+..+++.++||||||||++|+++++|+|++|||||++++++|+||+++|++||+|+++||+|+||+|||||||++++|
T Consensus 161 ~~~~~~~~~l~LGfTFSFPv~Qtsi~~g~Li~WTKGF~~~~~vG~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY 240 (497)
T PLN02405 161 DFHLPPGRQRELGFTFSFPVKQTSISSGTLIKWTKGFSIDDAVGQDVVGELTKAMERVGLDMRVSALVNDTIGTLAGGRY 240 (497)
T ss_pred ccccCcccccccceeEeeeeccCCCCceEEEEeccccccCCccCchHHHHHHHHHHHcCCCceEEEEEecCHHHHHHhhc
Confidence 43323346799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEEEccCccceeeecccccCcccCCCCCCCceEEEccCCc
Q 022975 241 HNKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVSKLSADI 287 (289)
Q Consensus 241 ~~~~~~iglIlGTG~Na~yie~~~~i~k~~~~~~~~~~miIN~E~~~ 287 (289)
.+++|.||+|+|||||+||+|+.++|+||++..+..++|+||||.|-
T Consensus 241 ~~~~~~iG~IlGTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~ 287 (497)
T PLN02405 241 YNPDVVAAVILGTGTNAAYVERAQAIPKWHGLLPKSGEMVINMEWGN 287 (497)
T ss_pred CCCCceEEEEEeCCeeeEEEeecccCccccccCCCCCeEEEEecccc
Confidence 99999999999999999999999999999876667789999999983
No 2
>PLN02362 hexokinase
Probab=100.00 E-value=2.7e-80 Score=609.93 Aligned_cols=287 Identities=62% Similarity=0.974 Sum_probs=263.8
Q ss_pred CCceeEEEeeeehhhhhhhhheeehhcccccccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCCCCccee
Q 022975 1 MGKVTVAATVVCAAAVCAAAALVVRRRMKSTGRWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKM 80 (289)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~~~M 80 (289)
|+|+.++++++|++++|++++.++++++++..+|+++++++++|+++|.+|.++|++|+++|.+||++||++++.|+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~L~~v~~~f~~em~~GL~~~~~s~l~M 80 (509)
T PLN02362 1 MGKVAVGLAAAAAVAACAVAAVMVGRRVKSRRKWRRVVGVLKELEEACETPVGRLRQVVDAMAVEMHAGLASEGGSKLKM 80 (509)
T ss_pred CCceeeehhhhHHHHHHHHHHHhhhcccccchhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhccCCCCCCce
Confidence 78877777777777778888889999988767788899999999999999999999999999999999999875589999
Q ss_pred eecccccCCCCcccccEEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCCcccCCchhHHHHHHHHHHHHHHhcCC
Q 022975 81 LISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGE 160 (289)
Q Consensus 81 lps~v~~lP~G~E~G~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~ 160 (289)
|||||+++|+|+|+|.|||||||||||||++|+|.|++.....+++++|+||++++.+++++||||||+||.+|+++++.
T Consensus 81 lPTyv~~lPtG~E~G~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~Ip~~l~~~~~~eLFd~IA~~i~~fl~~~~~ 160 (509)
T PLN02362 81 LLTFVDDLPTGSEIGTYYALDLGGTNFRVLRVQLGGQRSSILSQDVERHPIPQHLMNSTSEVLFDFIASSLKQFVEKEEN 160 (509)
T ss_pred ecCccCCCCCCCcceeEEEEecCCceEEEEEEEecCCCcceeeceeEEEecChhhccCCHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999876655555667899999999999999999999999999998875
Q ss_pred CCCCCCCCeeeeeeeeeeeeeeccCCceEEEecccceeccCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHhhcccc
Q 022975 161 GFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRY 240 (289)
Q Consensus 161 ~~~~~~~~~~~lG~tfSfP~~q~~~~~~~Li~wtKgf~~~~~~g~dv~~~L~~al~r~~l~v~v~aivNDtvatlla~~y 240 (289)
+.+...++.++||||||||++|+++++|+|++|||||++++++|+||+++|+++|+|++++|+|+||+|||||||++++|
T Consensus 161 ~~~~~~~~~l~LGfTFSFPv~Q~si~~g~Li~WtKGF~~~~v~G~DVv~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~aY 240 (509)
T PLN02362 161 GSEFSQVRRRELGFTFSFPVKQTSISSGILIKWTKGFAISDMVGKDVAECLQGALNRRGLDMRVAALVNDTVGTLALGHY 240 (509)
T ss_pred cccccccccccceeEEeeeeccCCCCceEEEEeccccccCcccCchHHHHHHHHHHHcCCCcEEEEEEEcCHHHHHhhhc
Confidence 43222235799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEEEccCccceeeecccccCcccCCCCCCCceEEEccCCc
Q 022975 241 HNKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVSKLSADI 287 (289)
Q Consensus 241 ~~~~~~iglIlGTG~Na~yie~~~~i~k~~~~~~~~~~miIN~E~~~ 287 (289)
.++++.||+|+|||||+||+|+.++|+|+++..+..++|+||||.|.
T Consensus 241 ~~~~~~iG~IlGTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~ 287 (509)
T PLN02362 241 HDPDTVAAVIIGTGTNACYLERTDAIIKCQGLLTTSGSMVVNMEWGN 287 (509)
T ss_pred CCCCceEEEEEECCccceEeeehhhcccccccCCCCCcEEEEeeccC
Confidence 99999999999999999999999999999876667789999999985
No 3
>PLN02596 hexokinase-like
Probab=100.00 E-value=7.3e-80 Score=603.96 Aligned_cols=284 Identities=49% Similarity=0.807 Sum_probs=261.8
Q ss_pred CCceeEEEeeeehhhhhhhhheeehhcc-cccccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCCCCcce
Q 022975 1 MGKVTVAATVVCAAAVCAAAALVVRRRM-KSTGRWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLK 79 (289)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~~~ 79 (289)
|+|+.++++++|++++|++| +++++|+ +++.+|+++++++++|+++|.+|.++|++|+++|.+||++||+.+..|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~s~l~ 80 (490)
T PLN02596 2 MRKEVVVAATVATVAAVAAA-VLMGRWKRRKERQWKHTQRILRKFARECATPVSKLWEVADALVSDMTASLTAEETTTLN 80 (490)
T ss_pred CcceeeehhHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhccCCCCCCc
Confidence 78988888888888888777 8888887 666789999999999999999999999999999999999999886568899
Q ss_pred eeecccccCCCCcccccEEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCCcccCCchhHHHHHHHHHHHHHHhcC
Q 022975 80 MLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEG 159 (289)
Q Consensus 80 Mlps~v~~lP~G~E~G~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~ 159 (289)
||||||+++|+|+|+|+|||||||||||||++|+|.|+...+..+.+++|+||++++.+++++||||||+||++|+++++
T Consensus 81 MlpTyv~~lPtG~E~G~yLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~Ip~~l~~~t~~eLFd~IA~~i~~fl~~~~ 160 (490)
T PLN02596 81 MLVSYVASLPSGDEKGLYYGLNLRGSNFLLLRARLGGKNEPISDLYREEISIPSNVLNGTSQELFDYIALELAKFVAEHP 160 (490)
T ss_pred eecccCCCCCCCCcceEEEEEeeCCceEEEEEEEEcCCCCceEEEEEEEecCChHhhcCCHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999987555566667889999999999999999999999999999887
Q ss_pred CCCCCCCCCeeeeeeeeeeeeeeccCCceEEEecccceeccCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHhhccc
Q 022975 160 EGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGR 239 (289)
Q Consensus 160 ~~~~~~~~~~~~lG~tfSfP~~q~~~~~~~Li~wtKgf~~~~~~g~dv~~~L~~al~r~~l~v~v~aivNDtvatlla~~ 239 (289)
.+....+++.++||||||||++|+++++|+|++| |||++++++|+||+++|++|++|++++|+|+||+|||||||++++
T Consensus 161 ~~~~~~~~~~l~lGfTFSFP~~Q~si~~G~Li~W-KgF~~~~~vG~Dvv~lL~~Al~r~~l~v~v~AivNDTVgTL~a~a 239 (490)
T PLN02596 161 GDEADTPERVKKLGFTVSYPVDQAAASSGSAIKW-KSFSADDTVGKALVNDINRALEKHGLKIRVFALVDDTIGNLAGGR 239 (490)
T ss_pred cccccCcccccccceEEeeeeeecCCCCEEEEEe-ccccCCCccCcHHHHHHHHHHHhcCCCceEEEEEEcCHHHHHhhh
Confidence 5443223457999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEEEEEEccCccceeeecccccCcccCCCCCCCceEEEccCC
Q 022975 240 YHNKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVSKLSAD 286 (289)
Q Consensus 240 y~~~~~~iglIlGTG~Na~yie~~~~i~k~~~~~~~~~~miIN~E~~ 286 (289)
|.++++.||+|+|||||+||+|+.++|+|+++..+..++|+||||.|
T Consensus 240 Y~~~~~~iG~I~GTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG 286 (490)
T PLN02596 240 YYNKDTVAAVTLGMGTNAAYVEPAQAIPKWQSPSPESQEIVISTEWG 286 (490)
T ss_pred cCCCCeEEEEEEecccceEEEEEccccccccCCCCCCCeEEEEeccc
Confidence 99999999999999999999999999999987656678999999998
No 4
>PLN02914 hexokinase
Probab=100.00 E-value=1e-76 Score=581.78 Aligned_cols=254 Identities=62% Similarity=1.007 Sum_probs=236.2
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCCCCcceeeecccccCCCCcccccEEEEeeCCceEEEEEEE
Q 022975 34 WARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQ 113 (289)
Q Consensus 34 ~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~~~Mlps~v~~lP~G~E~G~~LaiDlGGTnlRv~~V~ 113 (289)
.+++.+++++|+++|.+|.++|++|+++|.+||++||++++.|+++||||||+++|+|+|+|.|||||||||||||++|+
T Consensus 34 ~~~~~~~~~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~s~l~MlpTyv~~lPtG~E~G~fLAlDlGGTNfRV~~V~ 113 (490)
T PLN02914 34 AVSVAPILTKLQKDCATPLPVLRHVADAMAADMRAGLAVDGGGDLKMILSYVDSLPSGNEKGLFYALDLGGTNFRVLRVQ 113 (490)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhccCCCCCcceeccccCCCCCCCeeeEEEEEecCCceEEEEEEE
Confidence 34788999999999999999999999999999999999875588999999999999999999999999999999999999
Q ss_pred eCCCcceeEEeeeEEeecCCCcccCCchhHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeeeeeeeeeeeccCCceEEEec
Q 022975 114 LGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKW 193 (289)
Q Consensus 114 l~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~tfSfP~~q~~~~~~~Li~w 193 (289)
|.|++.++..+.+++++||++++.+++++||||||+||.+|++++..+.+.+.++.++||||||||++|+++++|+|++|
T Consensus 114 L~g~~~~~~~~~~~~~~ip~~l~~gt~~eLFdfIA~~i~~fl~~~~~~~~~~~~~~l~LGfTFSFP~~Q~si~~g~Li~W 193 (490)
T PLN02914 114 LGGKDERVIATEFEQVSIPQELMFGTSEELFDFIASGLANFVAKEGGKFHLPEGRKREIGFTFSFPVKQTSIDSGILMKW 193 (490)
T ss_pred ecCCCCceeeeeEEEecCChhhccCCHHHHHHHHHHHHHHHHHhccccccCCccccccceeeEeeeeecCCCCceEEEEe
Confidence 99876556666778999999999999999999999999999998865433333467999999999999999999999999
Q ss_pred ccceeccCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHhhcccccCCCcEEEEEEccCccceeeecccccCcccCCC
Q 022975 194 TKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWHGLL 273 (289)
Q Consensus 194 tKgf~~~~~~g~dv~~~L~~al~r~~l~v~v~aivNDtvatlla~~y~~~~~~iglIlGTG~Na~yie~~~~i~k~~~~~ 273 (289)
||||++++++|+||+++|++||+|++++|+|+||+|||||||++++|.++++.||+|+|||||+||+|+.++|+|+++..
T Consensus 194 TKGF~~~gv~G~DVv~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~~~~~~iGlIlGTGtNacY~E~~~~i~k~~~~~ 273 (490)
T PLN02914 194 TKGFAVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWDDDVMVAVILGTGTNACYVERTDAIPKLQGQK 273 (490)
T ss_pred ccccccCCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcCCCCceEEEEEECCeeeEEEeecccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred CCCCceEEEccCCc
Q 022975 274 PKSGEMVSKLSADI 287 (289)
Q Consensus 274 ~~~~~miIN~E~~~ 287 (289)
+..++|+||||.|.
T Consensus 274 ~~~~~miINtEwG~ 287 (490)
T PLN02914 274 SSSGRTIINTEWGA 287 (490)
T ss_pred CCCceEEEeccccc
Confidence 66789999999985
No 5
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.7e-69 Score=519.63 Aligned_cols=250 Identities=46% Similarity=0.667 Sum_probs=232.0
Q ss_pred cccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCCC-CcceeeecccccCCCCcccccEEEEeeCCceEEE
Q 022975 31 TGRWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGG-SKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRV 109 (289)
Q Consensus 31 ~~~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~-s~~~Mlps~v~~lP~G~E~G~~LaiDlGGTnlRv 109 (289)
..+++.+.++++++++.|.+|.++|++++++|.+||++||+...+ +.++|+||||.++|+|+|+|.|||||||||||||
T Consensus 21 ~~~~~~~~~~l~~~~~~f~l~~~~L~~v~~~~~~em~~gL~~~~~g~~~~mlpt~V~~lP~G~E~G~~lalDLGGTn~Rv 100 (474)
T KOG1369|consen 21 ASRLAAVSRQLEELLALFQLPDEQLREVVDAFREEMERGLAKKTHGSAVKMLPTYVPDLPDGTEKGKFLALDLGGTNFRV 100 (474)
T ss_pred hhhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCcccccchhhcccCCCCCcCCCEEEEecCCCceEE
Confidence 356888999999999999999999999999999999999985543 3499999999999999999999999999999999
Q ss_pred EEEEeCCCcceeEEeeeEEeecCCCcccCCchhHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeeeeeeeeeeeccCCceE
Q 022975 110 LRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGD 189 (289)
Q Consensus 110 ~~V~l~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~tfSfP~~q~~~~~~~ 189 (289)
++|.|+|++. .+.+..+.|+||++++.+++++|||||++|+.+|+++++... . ..+|+||||||||+|+++++|+
T Consensus 101 ~~v~L~g~~~-~~~~~~~~~~ip~~~m~gt~~~Lfd~Ia~~l~~F~~~~~~~~-~---~~l~lgFTFSfP~~Q~si~~g~ 175 (474)
T KOG1369|consen 101 LLVKLGGGRT-SVRMYNKIYAIPEEIMQGTGEELFDFIARCLADFLDKMGLKG-A---SKLPLGFTFSFPCRQTSIDKGT 175 (474)
T ss_pred EEEEecCCcc-cceeeeeeEecCHHHHcCchHHHHHHHHHHHHHHHHHhcccc-c---cccccceEEeeeeeecccccce
Confidence 9999998865 556667899999999999999999999999999999988752 1 1299999999999999999999
Q ss_pred EEecccceeccCCCCCcHHHHHHHHHHHcCCC-ceEEEEEechHHHhhcccccCCCcEEEEEEccCccceeeecccccCc
Q 022975 190 LIKWTKGFSIEDTVGEDVVGELTKAMERIGLD-MRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPK 268 (289)
Q Consensus 190 Li~wtKgf~~~~~~g~dv~~~L~~al~r~~l~-v~v~aivNDtvatlla~~y~~~~~~iglIlGTG~Na~yie~~~~i~k 268 (289)
|++|||||++++++|+|++++|+++|+|++++ +.|+|++|||||||++++|.+++|.||+|+|||||+||+|+.++|++
T Consensus 176 L~~wTkGf~~~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~~~~~igvI~GTGtNacY~e~~~~i~k 255 (474)
T KOG1369|consen 176 LIRWTKGFKATDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYEDPNCEIGVIFGTGTNACYMEDMRNIEK 255 (474)
T ss_pred EEEecccccchhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecCCCcEEEEEECCCccceeeeeccchhh
Confidence 99999999999999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCceEEEccCC
Q 022975 269 WHGLLPKSGEMVSKLSAD 286 (289)
Q Consensus 269 ~~~~~~~~~~miIN~E~~ 286 (289)
+++..+.. +||||||=|
T Consensus 256 ~~~~~~~~-~miIN~EWG 272 (474)
T KOG1369|consen 256 VEGDAGRG-PMCINTEWG 272 (474)
T ss_pred cccccCCC-ceEEEcccc
Confidence 99876555 999999976
No 6
>PTZ00107 hexokinase; Provisional
Probab=100.00 E-value=4.2e-68 Score=519.64 Aligned_cols=241 Identities=34% Similarity=0.555 Sum_probs=215.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccC---------CCCcceeeecccccCCCCcccccEEEEeeCCce
Q 022975 36 RAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE---------GGSKLKMLISYVDNLPTGDEKGLFYALDLGGTN 106 (289)
Q Consensus 36 ~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~---------~~s~~~Mlps~v~~lP~G~E~G~~LaiDlGGTn 106 (289)
+.++.+++++++|.+|.++|++|+++|.+||++||+++ +.|+++||||||+++|+|+|+|+||||||||||
T Consensus 6 ~~~~~~~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~~~~~~~~~~s~l~Mlps~v~~lPtG~E~G~fLAlDlGGTN 85 (464)
T PTZ00107 6 KQRVRLASLVNQFTMSKEKLKELVDYFLYELVEGLEAHRRHRNLWIPNECSFKMLDSCVYNLPTGKEKGVYYAIDFGGTN 85 (464)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCccccccccCCCCCCCccceEEEEecCCce
Confidence 34566888999999999999999999999999999876 247899999999999999999999999999999
Q ss_pred EEEEEEEeCCCcceeEEeeeEEeecCCCcccC---------CchhHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeeeeee
Q 022975 107 FRVLRVQLGGREGRVVKQEFEEVSIPPHLMTG---------SSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFS 177 (289)
Q Consensus 107 lRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~~---------~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~tfS 177 (289)
|||++|+|.|++. ....+++++||+..+.+ ++++||||||+||.+|++++.... ...+.++||||||
T Consensus 86 ~RV~~V~L~g~~~--~~~~~~~~~ip~~~~~~~~~~~~k~~t~~~lFd~IA~~i~~fl~~~~~~~--~~~~~l~lGfTFS 161 (464)
T PTZ00107 86 FRAVRVSLRGGGK--MERTQSKFSLPKSALLGEKGLLDKKATATDLFDHIAKSIKKMMEENGDPE--DLNKPVPVGFTFS 161 (464)
T ss_pred EEEEEEEeCCCCc--eeeEEEEEeCCHHHhccccccccccCCHHHHHHHHHHHHHHHHHhccccc--cccccccceeEEe
Confidence 9999999998753 33445689999998877 899999999999999999876211 1135699999999
Q ss_pred eeeeeccCCceEEEecccceec-----cCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHhhcccccC----CCcEEE
Q 022975 178 FPVRQTSIASGDLIKWTKGFSI-----EDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHN----KDAIAA 248 (289)
Q Consensus 178 fP~~q~~~~~~~Li~wtKgf~~-----~~~~g~dv~~~L~~al~r~~l~v~v~aivNDtvatlla~~y~~----~~~~ig 248 (289)
||++|+++++|+|++|||||++ ++++|+||+++|++||+|++++|+|+||+|||||||++++|.+ +++.||
T Consensus 162 FP~~Q~si~~g~Li~WtKGF~~~~~~~~~v~G~DV~~lL~~Al~r~~l~v~v~AivNDTVgTL~a~ay~~~~~~~~~~iG 241 (464)
T PTZ00107 162 FPCTQLSVNNAILIDWTKGFETGRATNDPVEGKDVGELLNDAFKRNNVPANVVAVLNDTVGTLISCAYQKPKNTPPCQVG 241 (464)
T ss_pred eeeecccCCceEEEEeccceeeccCCCCCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHHHHhcCcCCCCCceEE
Confidence 9999999999999999999999 8999999999999999999999999999999999999999999 999999
Q ss_pred EEEccCccceeeecccccCcccCCCCCCCceEEEccCCc
Q 022975 249 VILGTGTNAAYVERAHAIPKWHGLLPKSGEMVSKLSADI 287 (289)
Q Consensus 249 lIlGTG~Na~yie~~~~i~k~~~~~~~~~~miIN~E~~~ 287 (289)
+|+|||+|+||+|+.... +..++|+||||.|.
T Consensus 242 lIlGTG~NacY~E~~~~~-------~~~~~~iINtEwG~ 273 (464)
T PTZ00107 242 VIIGTGSNACYFEPEVSA-------YGYAGTPINMECGN 273 (464)
T ss_pred EEEeccccceeeehhhcc-------CCCCcEEEEeeccc
Confidence 999999999999964331 23467999999985
No 7
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.9e-62 Score=464.20 Aligned_cols=250 Identities=39% Similarity=0.612 Sum_probs=229.2
Q ss_pred cHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCCCCcceeeecccccCCCCcccccEEEEeeCCceEEEEEE
Q 022975 33 RWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRV 112 (289)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~~~Mlps~v~~lP~G~E~G~~LaiDlGGTnlRv~~V 112 (289)
.|+.+++.+.++++.|.+|.|+|.++.+.|.+||++||+...++.++|+|+|+...|+|+|+|.||+||+||||||+|+|
T Consensus 13 ~~~~l~~~~~~~~~~~~~p~e~l~~v~~~Fieel~kgL~~~~G~~l~MIP~~v~~~p~g~e~g~~LaiD~GGTnlRvc~V 92 (466)
T COG5026 13 VEAALEQAVEELVESFTVPTEDLREVVKAFIEELEKGLQPKSGDFLPMIPTWVAPLPTGNESGSVLAIDLGGTNLRVCLV 92 (466)
T ss_pred ccHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHhccCCCCCCccccccccccCCCCCCCCCCEEEEecCCceEEEEEE
Confidence 57889999999999999999999999999999999999944333499999999999999999999999999999999999
Q ss_pred EeCCCcceeEEeeeEEeecCCCcccC-CchhHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeeeeeeeeeeeccCCceEEE
Q 022975 113 QLGGREGRVVKQEFEEVSIPPHLMTG-SSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLI 191 (289)
Q Consensus 113 ~l~g~~~~~~~~~~~~~~Ip~~~~~~-~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~tfSfP~~q~~~~~~~Li 191 (289)
.|+|+++..+++. ++.+|.+.... +.+++|++||++++.|++++..+.. ...+++|||||||+.|+++++|.|+
T Consensus 93 ~l~g~gt~~~~~s--ks~lp~e~~~~~~~~~l~~~iadrl~~fi~~~~~~~~---~~~l~~gfTFSYP~~q~sin~g~l~ 167 (466)
T COG5026 93 VLGGDGTFDIEQS--KSFLPVECRDSESRDELFGFIADRLAAFIKEQHPSGY---GSKLPIGFTFSYPLNQTSINEGQLI 167 (466)
T ss_pred EeCCCCCcccccC--cccCchhhccCCChHHHHHHHHHHHHHHHHHhCchhc---cCcceeeEEEeccccccccCceeeE
Confidence 9999987655443 44499988766 7899999999999999999887532 4689999999999999999999999
Q ss_pred ecccceeccCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHhhcccccCCCcEEEEEEccCccceeeecccccCcccC
Q 022975 192 KWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWHG 271 (289)
Q Consensus 192 ~wtKgf~~~~~~g~dv~~~L~~al~r~~l~v~v~aivNDtvatlla~~y~~~~~~iglIlGTG~Na~yie~~~~i~k~~~ 271 (289)
+|||||++++++|+|++++|+++|+++++|++|++|+|||+||++++.|.++++.||+|||||||+||+|+.+.|||+..
T Consensus 168 rwTKgf~i~e~ig~dvv~~l~e~l~~r~~pi~v~aviNDttgtlla~~yt~~~~~iG~IfGTGtN~~y~e~~~~ipkl~~ 247 (466)
T COG5026 168 RWTKGFDIPEVIGTDVVRLLQEALSARNLPIRVVAVINDTTGTLLASVYTSSETIIGIIFGTGTNGCYCEPKGRIPKLPR 247 (466)
T ss_pred eecccCcchhhhhhhHHHHHHHHHHhcCCceEEEEEecccHHHHHHHhhcCCCCeEEEEEecCccceEEeecccCCcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred -CCCCCCceEEEccCCc
Q 022975 272 -LLPKSGEMVSKLSADI 287 (289)
Q Consensus 272 -~~~~~~~miIN~E~~~ 287 (289)
..++.+.|+||+|-|-
T Consensus 248 d~~~~~~pm~iN~EwGs 264 (466)
T COG5026 248 DDLPETGPMLINCEWGS 264 (466)
T ss_pred ccccccCCeEEEecccc
Confidence 3567788999999773
No 8
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=100.00 E-value=1e-59 Score=417.86 Aligned_cols=202 Identities=48% Similarity=0.754 Sum_probs=172.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCCCC--cceeeecccccCCCCcccccEEEEeeCCceEEEEEEE
Q 022975 36 RAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGS--KLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQ 113 (289)
Q Consensus 36 ~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s--~~~Mlps~v~~lP~G~E~G~~LaiDlGGTnlRv~~V~ 113 (289)
+..+.++++.++|.+|.++|++|+++|++||+.||++++++ .++||||||+++|+|+|+|.|||||||||||||++|+
T Consensus 2 ~~~~~v~~~~~~f~~s~~~L~~i~~~f~~em~~gL~~~~~~~~~l~MlPs~v~~~P~G~E~G~~LalDlGGTnlRv~~V~ 81 (206)
T PF00349_consen 2 DLQQAVQKLLQQFTLSDEQLQEISDRFLEEMEKGLAKSSSSMSSLKMLPSYVTSLPTGNEKGDFLALDLGGTNLRVALVE 81 (206)
T ss_dssp HHHHHHHHHHGGGS--HHHHHHHHHHHHHHHHHHHSTTTGCG-SS-EEEESEESSTTSTTEEEEEEEEESSSSEEEEEEE
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHccCCCCceeeeccccccccCCCCCCCceEEEEeecCcEEEEEEEE
Confidence 56788999999999999999999999999999999876532 4999999999999999999999999999999999999
Q ss_pred eCCCcceeEEeeeEEeecCCCcccCCchhHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeeeeeeeeeeeccCCceEEEec
Q 022975 114 LGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKW 193 (289)
Q Consensus 114 l~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~tfSfP~~q~~~~~~~Li~w 193 (289)
|.|++. ....+++|+||++++.+++++||||||+||.+|+++++.. ..++.+++|||||||++|+++++|+|++|
T Consensus 82 L~g~~~--~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~~~~~~---~~~~~l~lGfTFSFP~~q~~~~~g~li~w 156 (206)
T PF00349_consen 82 LSGNGK--VEIEQEKYKIPEELMNGSGEELFDFIADCIAEFLKEHNLE---SRDEKLPLGFTFSFPVEQTSLNSGTLIRW 156 (206)
T ss_dssp EESSSE--EEEEEEEEE--HHHHTSBHHHHHHHHHHHHHHHHHHTTTT---STTSEEEEEEEEESSEEESSTTEEEE---
T ss_pred EcCCCC--ceeeeccccCChHHhcCCcccHHHHHHHHHHHHHHHhccc---ccccccceEEEEEEEEEeccCCCeEEEEe
Confidence 998863 3345578999999999999999999999999999998763 12578999999999999999999999999
Q ss_pred ccceeccCCCCCcHHHHHHHHHHHcCCC-ceEEEEEechHHHhhcccccC
Q 022975 194 TKGFSIEDTVGEDVVGELTKAMERIGLD-MRVAALVNDTIGTLAGGRYHN 242 (289)
Q Consensus 194 tKgf~~~~~~g~dv~~~L~~al~r~~l~-v~v~aivNDtvatlla~~y~~ 242 (289)
||||++++++|+|++++|+++|+|++++ ++|+||+|||||||++++|.+
T Consensus 157 tKgf~~~~~~G~dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~Y~~ 206 (206)
T PF00349_consen 157 TKGFDISGVVGKDVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAGAYQD 206 (206)
T ss_dssp -TT---BTGTTSBHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHHTT-
T ss_pred eccccccCCCCCccchhHHHHHHHhcccCcceEEEEECCHHHhhhhhcCC
Confidence 9999999999999999999999999998 999999999999999999974
No 9
>PRK09698 D-allose kinase; Provisional
Probab=99.62 E-value=1.2e-14 Score=135.01 Aligned_cols=164 Identities=16% Similarity=0.192 Sum_probs=124.9
Q ss_pred cccEEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCCcccCCchhHHHHHHHHHHHHHHhcCCCCCCCCCCeeeee
Q 022975 94 KGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELG 173 (289)
Q Consensus 94 ~G~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG 173 (289)
.++++++|+|||++|+++++++|+ ++.. ..++.|.. .+.+ .++.+++.|.+++++... +...+|
T Consensus 3 ~~~~lgidig~t~i~~~l~d~~g~---i~~~--~~~~~~~~---~~~~-~~~~l~~~i~~~~~~~~~-------~i~gig 66 (302)
T PRK09698 3 KNVVLGIDMGGTHIRFCLVDAEGE---ILHC--EKKRTAEV---IAPD-LVSGLGEMIDEYLRRFNA-------RCHGIV 66 (302)
T ss_pred ccEEEEEEcCCcEEEEEEEcCCCC---EEEE--EEeCCccc---cchH-HHHHHHHHHHHHHHHcCC-------CeeEEE
Confidence 467999999999999999999886 3321 23444422 2233 499999999999987541 467788
Q ss_pred eeeeeeeeeccCCceEEEecccceeccCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHhhccccc---CCCcEEEEE
Q 022975 174 FTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH---NKDAIAAVI 250 (289)
Q Consensus 174 ~tfSfP~~q~~~~~~~Li~wtKgf~~~~~~g~dv~~~L~~al~r~~l~v~v~aivNDtvatlla~~y~---~~~~~iglI 250 (289)
++++.|++.. .+.++. +..+.+++..+.++.+.|++++ ++| +.+.||+.+..+++.+. +.+..+.+.
T Consensus 67 ia~pG~vd~~---~g~i~~-~~~~~~~~~~~~~l~~~l~~~~---~~p---v~v~NDa~aaa~~E~~~~~~~~~~~~~v~ 136 (302)
T PRK09698 67 MGFPALVSKD---RRTVIS-TPNLPLTALDLYDLADKLENTL---NCP---VFFSRDVNLQLLWDVKENNLTQQLVLGAY 136 (302)
T ss_pred EeCCcceeCC---CCEEEe-cCCCCccccccCCHHHHHHHHh---CCC---EEEcchHhHHHHHHHHhcCCCCceEEEEE
Confidence 8888888642 233322 2223222445689999999998 899 89999999999887653 456889999
Q ss_pred EccCccceeeecccccCcccCCCCCCCceEEEc
Q 022975 251 LGTGTNAAYVERAHAIPKWHGLLPKSGEMVSKL 283 (289)
Q Consensus 251 lGTG~Na~yie~~~~i~k~~~~~~~~~~miIN~ 283 (289)
+|||++++++.+.+.+.+..+.++|.|||.++.
T Consensus 137 lgtGIG~giv~~G~~~~G~~g~agEiGh~~v~~ 169 (302)
T PRK09698 137 LGTGMGFAVWMNGAPWTGAHGVAGELGHIPLGD 169 (302)
T ss_pred ecCceEEEEEECCEEeeCCCCCccccCceEeeC
Confidence 999999999999999999888888999999864
No 10
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=99.61 E-value=1.3e-14 Score=132.38 Aligned_cols=156 Identities=14% Similarity=0.240 Sum_probs=118.9
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCCcccCCchhHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeeee
Q 022975 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFT 175 (289)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~t 175 (289)
.|+++|+|||++|++++++.|+ ++.. ++++.|. .+.+++++.+.+.+.++..... ....+|++
T Consensus 1 ~~lgidiggt~i~~~l~d~~g~---i~~~--~~~~~~~----~~~~~~~~~i~~~i~~~~~~~~--------~~~gIgv~ 63 (256)
T PRK13311 1 MYYGFDMGGTKIELGVFDENLQ---RIWH--KRVPTPR----EDYPQLLQILRDLTEEADTYCG--------VQGSVGIG 63 (256)
T ss_pred CEEEEEECCCcEEEEEECCCCC---EEEE--EEecCCC----cCHHHHHHHHHHHHHHHHhhcC--------CCceEEEE
Confidence 3799999999999999999886 3422 3444442 2456788888888877743321 12468888
Q ss_pred eeeeeeeccCCceEEEecccceeccCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHhhccccc----CCCcEEEEEE
Q 022975 176 FSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDAIAAVIL 251 (289)
Q Consensus 176 fSfP~~q~~~~~~~Li~wtKgf~~~~~~g~dv~~~L~~al~r~~l~v~v~aivNDtvatlla~~y~----~~~~~iglIl 251 (289)
++.|++.. .+.+ .++ +.++..+.++.+.|++.+ ++| +.+.||+.+..+++.|. +.+..+.+.+
T Consensus 64 ~pG~vd~~---~g~i-~~~---~~~~w~~~~l~~~l~~~~---~~p---V~leNDanaaAlaE~~~g~~~~~~~~v~i~l 130 (256)
T PRK13311 64 IPGLPNAD---DGTV-FTA---NVPSAMGQPLQADLSRLI---QRE---VRIDNDANCFALSEAWDPEFRTYPTVLGLIL 130 (256)
T ss_pred ecCcEECC---CCEE-Ecc---CCCcccCCChHHHHHHHH---CCC---EEEEchhhHHHHHHHHhcCCCCCCcEEEEEE
Confidence 88888542 1222 232 222233589999999999 888 89999999999999884 4588999999
Q ss_pred ccCccceeeecccccCcccCCCCCCCceEE
Q 022975 252 GTGTNAAYVERAHAIPKWHGLLPKSGEMVS 281 (289)
Q Consensus 252 GTG~Na~yie~~~~i~k~~~~~~~~~~miI 281 (289)
|||++++++.+.+.+.+..+.++|.|||.+
T Consensus 131 gtGiG~giv~~G~l~~G~~g~AGEiGh~~v 160 (256)
T PRK13311 131 GTGVGGGLIVNGSIVSGRNHITGEFGHFRL 160 (256)
T ss_pred CcCeEEEEEECCEEecCCCCCCccceeEEe
Confidence 999999999999999998888889999998
No 11
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=99.61 E-value=2.7e-14 Score=133.43 Aligned_cols=162 Identities=22% Similarity=0.339 Sum_probs=125.6
Q ss_pred ccccEEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCCcccCCchhHHHHHHHHHHHHHHhcCCCCCCCCCCeeee
Q 022975 93 EKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQREL 172 (289)
Q Consensus 93 E~G~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~l 172 (289)
+..++++||+|||+++++++++.|+ ++. .+..+.|... ..+++.+.|.+.++++++.+. . ....+
T Consensus 4 ~~~~~lgidIggt~i~~~l~d~~g~---~l~--~~~~~~~~~~---~~~~~~~~i~~~i~~~~~~~~-~------~~~~i 68 (314)
T COG1940 4 EAMTVLGIDIGGTKIKVALVDLDGE---ILL--RERIPTPTPD---PEEAILEAILALVAELLKQAQ-G------RVAII 68 (314)
T ss_pred cCcEEEEEEecCCEEEEEEECCCCc---EEE--EEEEecCCCC---chhHHHHHHHHHHHHHHHhcC-C------cCceE
Confidence 4567999999999999999999886 332 1344455432 226899999999999998764 1 23457
Q ss_pred eeeeeeeeeeccC---CceEEEecccceeccCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHhhccccc----CCCc
Q 022975 173 GFTFSFPVRQTSI---ASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDA 245 (289)
Q Consensus 173 G~tfSfP~~q~~~---~~~~Li~wtKgf~~~~~~g~dv~~~L~~al~r~~l~v~v~aivNDtvatlla~~y~----~~~~ 245 (289)
|+.++.|.....- .....+.|. .+.|+.+.|++.+ ++| +.+.||+++..++++|. +.+.
T Consensus 69 GIgi~~pg~~~~~~~~~~~~~~~~~--------~~~~l~~~L~~~~---~~P---v~veNDan~aalaE~~~g~~~~~~~ 134 (314)
T COG1940 69 GIGIPGPGDVDNGTVIVPAPNLGWW--------NGVDLAEELEARL---GLP---VFVENDANAAALAEAWFGAGRGIDD 134 (314)
T ss_pred EEEeccceeccCCcEEeecCCCCcc--------ccccHHHHHHHHH---CCC---EEEecHHHHHHHHHHHhCCCCCCCC
Confidence 7777777644431 122222333 3488999999999 899 89999999999999995 4578
Q ss_pred EEEEEEccCccceeeecccccCcccCCCCCCCceEEEc
Q 022975 246 IAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVSKL 283 (289)
Q Consensus 246 ~iglIlGTG~Na~yie~~~~i~k~~~~~~~~~~miIN~ 283 (289)
.+.+++|||++++++.+.+.+.+..+.+++.|||+++.
T Consensus 135 ~~~i~~gtGIG~giv~~g~l~~G~~g~age~Gh~~v~~ 172 (314)
T COG1940 135 VVYITLGTGIGGGIIVNGKLLRGANGNAGEIGHMVVDP 172 (314)
T ss_pred EEEEEEccceeEEEEECCEEeecCCCccccccceEECC
Confidence 99999999999999999999999888888899999986
No 12
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=99.60 E-value=1.7e-14 Score=134.30 Aligned_cols=157 Identities=20% Similarity=0.263 Sum_probs=120.7
Q ss_pred EEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCCcccCCchhHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeeeee
Q 022975 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTF 176 (289)
Q Consensus 97 ~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~tf 176 (289)
+++||+|||++|+++++++|+ +... ..++.|. .+.+++.+.|++.+.++..+.+. ...+|+++
T Consensus 2 ~lgidig~t~i~~~l~d~~g~---i~~~--~~~~~~~----~~~~~~~~~i~~~i~~~~~~~~~--------~~~igia~ 64 (303)
T PRK13310 2 YYGFDIGGTKIELGVFNEKLE---LQWE--ERVPTPR----DSYDAFLDAVCELVAEADQRFGC--------KGSVGIGI 64 (303)
T ss_pred eEEEEeCCCcEEEEEECCCCc---EEEE--EEecCCC----cCHHHHHHHHHHHHHHHHhhcCC--------cceEEEeC
Confidence 799999999999999999875 3322 2344442 34678999999998888654321 23689999
Q ss_pred eeeeeeccCCceEEEecccceeccCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHhhccccc----CCCcEEEEEEc
Q 022975 177 SFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDAIAAVILG 252 (289)
Q Consensus 177 SfP~~q~~~~~~~Li~wtKgf~~~~~~g~dv~~~L~~al~r~~l~v~v~aivNDtvatlla~~y~----~~~~~iglIlG 252 (289)
+.|++... +.+ .++ +.++..+.++.+.|++.+ ++| +.+.||+.+..+++.|. +.+..+.+.+|
T Consensus 65 pG~vd~~~---g~~-~~~---~~~~w~~~~l~~~l~~~~---~~p---V~ieNDa~aaalaE~~~g~~~~~~~~~~l~~g 131 (303)
T PRK13310 65 PGMPETED---GTL-YAA---NVPAASGKPLRADLSARL---GRD---VRLDNDANCFALSEAWDDEFTQYPLVMGLILG 131 (303)
T ss_pred CCcccCCC---CEE-ecc---CcccccCCcHHHHHHHHH---CCC---eEEeccHhHHHHHHhhhccccCCCcEEEEEec
Confidence 99996421 222 111 122233589999999998 899 88999999999999884 46889999999
Q ss_pred cCccceeeecccccCcccCCCCCCCceEEEc
Q 022975 253 TGTNAAYVERAHAIPKWHGLLPKSGEMVSKL 283 (289)
Q Consensus 253 TG~Na~yie~~~~i~k~~~~~~~~~~miIN~ 283 (289)
||++++++.+.+.+.+..+.++|.|||.|+.
T Consensus 132 tGiG~giv~~G~l~~G~~g~aGEiGH~~v~~ 162 (303)
T PRK13310 132 TGVGGGLVFNGKPISGRSYITGEFGHMRLPV 162 (303)
T ss_pred CceEEEEEECCEEeeCCCCccccccceeecc
Confidence 9999999999999999888888999999863
No 13
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=99.58 E-value=3.6e-14 Score=132.54 Aligned_cols=157 Identities=18% Similarity=0.268 Sum_probs=122.3
Q ss_pred EEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCCcccCCchhHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeeeeee
Q 022975 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFS 177 (289)
Q Consensus 98 LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~tfS 177 (289)
|+||+|||++|++++++.|+ +... ..++.+ .+.+++++.|.+.|.+|+++.+... .+...+|++++
T Consensus 1 lgidig~t~~~~~l~d~~g~---i~~~--~~~~~~-----~~~~~~~~~l~~~i~~~~~~~~~~~----~~i~gIgva~p 66 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDEEGN---ILSK--WKVPTD-----TTPETIVDAIASAVDSFIQHIAKVG----HEIVAIGIGAP 66 (318)
T ss_pred CEEEeCCCEEEEEEECCCCC---EEEE--EEeCCC-----CCHHHHHHHHHHHHHHHHHhcCCCc----cceEEEEEecc
Confidence 58999999999999999886 3422 233332 2457899999999999999875432 35678888888
Q ss_pred eeeeec-c-CCceEEEecccceeccCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHhhccccc----CCCcEEEEEE
Q 022975 178 FPVRQT-S-IASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDAIAAVIL 251 (289)
Q Consensus 178 fP~~q~-~-~~~~~Li~wtKgf~~~~~~g~dv~~~L~~al~r~~l~v~v~aivNDtvatlla~~y~----~~~~~iglIl 251 (289)
.|++.. + +.......|. +.|+.+.|++.+ ++| +.+.||+.+..+++.+. +.+..+.+.+
T Consensus 67 G~vd~~~g~~~~~~~~~w~---------~~~l~~~l~~~~---~~p---v~v~NDa~~~alaE~~~g~~~~~~~~~~v~i 131 (318)
T TIGR00744 67 GPVNRQRGTVYFAVNLDWK---------QEPLKEKVEARV---GLP---VVVENDANAAALGEYKKGAGKGARDVICITL 131 (318)
T ss_pred ccccCCCCEEEecCCCCCC---------CCCHHHHHHHHH---CCC---EEEechHHHHHHHHHHhcccCCCCcEEEEEe
Confidence 888542 2 1111122454 378999999988 888 89999999999998873 4678999999
Q ss_pred ccCccceeeecccccCcccCCCCCCCceEEEc
Q 022975 252 GTGTNAAYVERAHAIPKWHGLLPKSGEMVSKL 283 (289)
Q Consensus 252 GTG~Na~yie~~~~i~k~~~~~~~~~~miIN~ 283 (289)
|||++++++.+++.+.+..+.+++.|||.++.
T Consensus 132 gtGiG~giv~~G~~~~G~~g~agEiGh~~v~~ 163 (318)
T TIGR00744 132 GTGLGGGIIINGEIRHGHNGVGAEIGHIRMVP 163 (318)
T ss_pred CCccEEEEEECCEEeecCCCCCcccCceEeCC
Confidence 99999999999999999888888999999863
No 14
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=99.54 E-value=4.7e-14 Score=121.00 Aligned_cols=154 Identities=22% Similarity=0.360 Sum_probs=123.3
Q ss_pred EEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCCcccCCchhHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeeeeeee
Q 022975 99 ALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSF 178 (289)
Q Consensus 99 aiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~tfSf 178 (289)
+||+|+|+++++++++.|+ ++.. +.+++| .+.+++++.+.+.+.+++.+.+. . .+|++++.
T Consensus 1 gidig~~~i~~~l~d~~g~---ii~~--~~~~~~-----~~~~~~~~~l~~~i~~~~~~~~~--------~-gIgi~~pG 61 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDLDGE---IIYS--ESIPTP-----TSPEELLDALAELIERLLADYGR--------S-GIGISVPG 61 (179)
T ss_dssp EEEEESSEEEEEEEETTSC---EEEE--EEEEHH-----SSHHHHHHHHHHHHHHHHHHHTC--------E-EEEEEESS
T ss_pred CEEECCCEEEEEEECCCCC---EEEE--EEEECC-----CCHHHHHHHHHHHHHHHHhhccc--------c-cEEEeccc
Confidence 6999999999999999886 4432 345555 35688999999999999988742 2 78889999
Q ss_pred eeeeccCCceEEEecccceeccCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHhhccccc----CCCcEEEEEEccC
Q 022975 179 PVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDAIAAVILGTG 254 (289)
Q Consensus 179 P~~q~~~~~~~Li~wtKgf~~~~~~g~dv~~~L~~al~r~~l~v~v~aivNDtvatlla~~y~----~~~~~iglIlGTG 254 (289)
|++... +.++.... .+..+.++.+.|++.+ ++| +.+.||+.+..+++.+. +.+..+.+.+|||
T Consensus 62 ~v~~~~---g~i~~~~~----~~~~~~~l~~~l~~~~---~~p---v~i~Nd~~~~a~ae~~~~~~~~~~~~~~l~ig~G 128 (179)
T PF00480_consen 62 IVDSEK---GRIISSPN----PGWENIPLKEELEERF---GVP---VIIENDANAAALAEYWFGAAKDCDNFLYLYIGTG 128 (179)
T ss_dssp EEETTT---TEEEECSS----GTGTTCEHHHHHHHHH---TSE---EEEEEHHHHHHHHHHHHSTTTTTSSEEEEEESSS
T ss_pred cCcCCC---CeEEecCC----CCcccCCHHHHhhccc---ceE---EEEecCCCcceeehhhcCccCCcceEEEEEeecC
Confidence 987643 33433221 3344599999999999 888 89999999999999873 4578999999999
Q ss_pred ccceeeecccccCcccCCCCCCCceEEEcc
Q 022975 255 TNAAYVERAHAIPKWHGLLPKSGEMVSKLS 284 (289)
Q Consensus 255 ~Na~yie~~~~i~k~~~~~~~~~~miIN~E 284 (289)
++++++.+.+.+.+..+.+++.+||.++.+
T Consensus 129 iG~~ii~~g~i~~G~~~~aGeigh~~~~~~ 158 (179)
T PF00480_consen 129 IGAGIIINGKIYRGSNGFAGEIGHMPVDPN 158 (179)
T ss_dssp EEEEEEETTEEETTTTS-TTGGGGSBSSTT
T ss_pred CCcceecccccccCCCccccceeeeeccCC
Confidence 999999999999998888889999999753
No 15
>PRK09557 fructokinase; Reviewed
Probab=99.54 E-value=1.1e-13 Score=128.65 Aligned_cols=156 Identities=18% Similarity=0.228 Sum_probs=118.1
Q ss_pred EEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCCcccCCchhHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeeeee
Q 022975 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTF 176 (289)
Q Consensus 97 ~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~tf 176 (289)
+|++|+|||++|+++++++|+ +... .+++.|. .+.+++.+.|++.+.++..+.+ ....+|+++
T Consensus 2 ~lgidig~t~~~~~l~d~~g~---i~~~--~~~~~~~----~~~~~~~~~i~~~i~~~~~~~~--------~~~gIgi~~ 64 (301)
T PRK09557 2 RIGIDLGGTKIEVIALDDAGE---ELFR--KRLPTPR----DDYQQTIEAIATLVDMAEQATG--------QRGTVGVGI 64 (301)
T ss_pred EEEEEECCCcEEEEEECCCCC---EEEE--EEecCCC----CCHHHHHHHHHHHHHHHHhhcC--------CceEEEecC
Confidence 799999999999999999875 3321 2333332 2456788889888888876442 236788889
Q ss_pred eeeeeeccCCceEEEecccceeccCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHhhccccc----CCCcEEEEEEc
Q 022975 177 SFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDAIAAVILG 252 (289)
Q Consensus 177 SfP~~q~~~~~~~Li~wtKgf~~~~~~g~dv~~~L~~al~r~~l~v~v~aivNDtvatlla~~y~----~~~~~iglIlG 252 (289)
+.|++... +.+...... -..+.++.+.|+++| ++| +.+.||+.+..+++.+. +.+..+.+.+|
T Consensus 65 pG~vd~~~---g~i~~~~~~----~~~~~~l~~~l~~~~---~~p---v~~~NDa~aaA~aE~~~g~~~~~~~~~~l~ig 131 (301)
T PRK09557 65 PGSISPYT---GLVKNANST----WLNGQPLDKDLSARL---NRE---VRLANDANCLAVSEAVDGAAAGKQTVFAVIIG 131 (301)
T ss_pred cccCcCCC---CeEEecCCc----cccCCCHHHHHHHHH---CCC---EEEccchhHHHHHHHHhcccCCCCcEEEEEEc
Confidence 88885421 222211110 012488999999999 888 78999999999999773 45778999999
Q ss_pred cCccceeeecccccCcccCCCCCCCceEEE
Q 022975 253 TGTNAAYVERAHAIPKWHGLLPKSGEMVSK 282 (289)
Q Consensus 253 TG~Na~yie~~~~i~k~~~~~~~~~~miIN 282 (289)
||+.++++.+.+.+.+..+.++|.|||.|+
T Consensus 132 tGiG~giv~~G~l~~G~~g~aGEiGH~~v~ 161 (301)
T PRK09557 132 TGCGAGVAINGRVHIGGNGIAGEWGHNPLP 161 (301)
T ss_pred cceEEEEEECCEEEecCCCCCcccCceecc
Confidence 999999999999999988888899999984
No 16
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=99.53 E-value=1.7e-13 Score=126.75 Aligned_cols=154 Identities=15% Similarity=0.177 Sum_probs=118.3
Q ss_pred EEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCCcccCCchhHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeeeee
Q 022975 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTF 176 (289)
Q Consensus 97 ~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~tf 176 (289)
++++|+|||++|+++++++|+ +.. ...++.|.. .+.+++.+.|++.+.++.. +...+|+++
T Consensus 3 ~lgvdig~~~i~~~l~dl~g~---i~~--~~~~~~~~~---~~~~~~~~~i~~~i~~~~~-----------~~~~igi~~ 63 (291)
T PRK05082 3 TLAIDIGGTKIAAALVGEDGQ---IRQ--RRQIPTPAS---QTPEALRQALSALVSPLQA-----------QADRVAVAS 63 (291)
T ss_pred EEEEEECCCEEEEEEEcCCCc---EEE--EEEecCCCC---CCHHHHHHHHHHHHHHhhh-----------cCcEEEEeC
Confidence 799999999999999999886 332 123444431 3456788888888887752 124699999
Q ss_pred eeeeeecc---CCceEEEecccceeccCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHhhccccc---CCCcEEEEE
Q 022975 177 SFPVRQTS---IASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH---NKDAIAAVI 250 (289)
Q Consensus 177 SfP~~q~~---~~~~~Li~wtKgf~~~~~~g~dv~~~L~~al~r~~l~v~v~aivNDtvatlla~~y~---~~~~~iglI 250 (289)
+.|++... .....+..|. +.|+.+.|++.+ ++| +.+.||+.+..+++.+. +.+..+.+.
T Consensus 64 pG~vd~~~~~~~~~~~~~~w~---------~~~l~~~l~~~~---~~p---v~v~NDa~a~a~aE~~~g~~~~~~~~~l~ 128 (291)
T PRK05082 64 TGIINDGILTALNPHNLGGLL---------HFPLVQTLEQLT---DLP---TIALNDAQAAAWAEYQALPDDIRNMVFIT 128 (291)
T ss_pred cccccCCeeEEecCCCCcccc---------CCChHHHHHHHh---CCC---EEEECcHHHHHHHHHHhcCCCCCCEEEEE
Confidence 99986311 1111222453 589999999988 888 88999999999998763 567899999
Q ss_pred EccCccceeeecccccCcccCCCCCCCceEEEcc
Q 022975 251 LGTGTNAAYVERAHAIPKWHGLLPKSGEMVSKLS 284 (289)
Q Consensus 251 lGTG~Na~yie~~~~i~k~~~~~~~~~~miIN~E 284 (289)
+|||++++++.+.+.+.+..+.++|.|||.|+.+
T Consensus 129 ig~GiG~giv~~G~~~~G~~g~AGEiGh~~v~~~ 162 (291)
T PRK05082 129 VSTGVGGGIVLNGKLLTGPGGLAGHIGHTLADPH 162 (291)
T ss_pred ECCCcceEEEECCEEeeCCCCccccccceEecCC
Confidence 9999999999999999998888889999998743
No 17
>PRK12408 glucokinase; Provisional
Probab=99.40 E-value=1.1e-12 Score=124.51 Aligned_cols=153 Identities=22% Similarity=0.206 Sum_probs=100.6
Q ss_pred CCccccc-EEEEeeCCceEEEEEEEeCCCc---ceeEEeeeEEeecCCCcccCCchhHHHHHHHHHHHHHHhcCCCCCCC
Q 022975 90 TGDEKGL-FYALDLGGTNFRVLRVQLGGRE---GRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVS 165 (289)
Q Consensus 90 ~G~E~G~-~LaiDlGGTnlRv~~V~l~g~~---~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~ 165 (289)
++-|++. ||++|+||||+|+++++.++.. ..+.. .++ .|+. ..+.+ .+.+.+|+++ ..
T Consensus 10 ~~~~~~~~~L~~DIGGT~i~~al~d~~g~~~~~~~~~~--~~~--~~t~----~~~~~----~~~i~~~~~~-~~----- 71 (336)
T PRK12408 10 VAVPRPESFVAADVGGTHVRVALVCASPDAAKPVELLD--YRT--YRCA----DYPSL----AAILADFLAE-CA----- 71 (336)
T ss_pred ccCcccccEEEEEcChhhhheeEEeccCCccccccccc--eeE--ecCC----CccCH----HHHHHHHHhc-CC-----
Confidence 3445553 9999999999999999876641 01111 112 2322 11223 3335566654 11
Q ss_pred CCCeeeeeeeeeee-eeeccCCceEEEecccceeccCCCCCcHHHHHHHHHHHcCC-CceEEEEEechHHHhhccccc--
Q 022975 166 PGRQRELGFTFSFP-VRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGL-DMRVAALVNDTIGTLAGGRYH-- 241 (289)
Q Consensus 166 ~~~~~~lG~tfSfP-~~q~~~~~~~Li~wtKgf~~~~~~g~dv~~~L~~al~r~~l-~v~v~aivNDtvatlla~~y~-- 241 (289)
+...+|++++.| ++...+...++ .|. .+.+.|++.+ ++ | +.+.||..+..+++.+.
T Consensus 72 --~~~~igIg~pG~~~~~g~v~~~nl-~w~-----------~~~~~l~~~~---~~~~---V~l~ND~naaa~gE~~~~~ 131 (336)
T PRK12408 72 --PVRRGVIASAGYALDDGRVITANL-PWT-----------LSPEQIRAQL---GLQA---VHLVNDFEAVAYAAPYMEG 131 (336)
T ss_pred --CcCEEEEEecCCceECCEEEecCC-CCc-----------cCHHHHHHHc---CCCe---EEEeecHHHHHcccccCCH
Confidence 246789999998 43211222233 352 1347777777 76 5 89999999999999886
Q ss_pred -----------CC-CcEEEEEEccCccceeeecccccCcccCCCCCCCceEEE
Q 022975 242 -----------NK-DAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVSK 282 (289)
Q Consensus 242 -----------~~-~~~iglIlGTG~Na~yie~~~~i~k~~~~~~~~~~miIN 282 (289)
+. ...+.+.+|||.+++++.+.+ .+..+..+|.|||.+.
T Consensus 132 ~~~~~~~g~~~~~~~~~~~i~~GTGiGggivi~g~--~g~~~~agE~GH~~~~ 182 (336)
T PRK12408 132 NQVLQLSGPAQAAAGPALVLGPGTGLGAALWIPNG--GRPVVLPTEAGQAALA 182 (336)
T ss_pred hHeeeecCCCCCCCCcEEEEECCCcceEEEEEcCC--CceeeecCccccccCC
Confidence 22 578999999999999999877 5555567799999884
No 18
>PRK00292 glk glucokinase; Provisional
Probab=99.40 E-value=1.9e-12 Score=121.49 Aligned_cols=147 Identities=19% Similarity=0.253 Sum_probs=100.6
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCCcccCCchhHHHHHHHHHHHHHHh-cCCCCCCCCCCeeeeee
Q 022975 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVAT-EGEGFHVSPGRQRELGF 174 (289)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~I~~fl~~-~~~~~~~~~~~~~~lG~ 174 (289)
++|++|+|||++|++++++.+. .+.. +++++.+. .+. +.+.+.+++++ ... +...+|+
T Consensus 3 ~~lgiDIGgT~i~~~l~~~~~~--~~~~--~~~~~~~~------~~~----~~~~l~~~l~~~~~~-------~~~gigI 61 (316)
T PRK00292 3 PALVGDIGGTNARFALCDWANG--EIEQ--IKTYATAD------YPS----LEDAIRAYLADEHGV-------QVRSACF 61 (316)
T ss_pred eEEEEEcCccceEEEEEecCCC--ceee--eEEEecCC------CCC----HHHHHHHHHHhccCC-------CCceEEE
Confidence 4899999999999999997543 1222 12333321 122 44555566654 221 3567999
Q ss_pred eeeeeeeeccCCceEEEecccceeccCCCCCcHHHHHHHHHHHcCC-CceEEEEEechHHHhhccccc------------
Q 022975 175 TFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGL-DMRVAALVNDTIGTLAGGRYH------------ 241 (289)
Q Consensus 175 tfSfP~~q~~~~~~~Li~wtKgf~~~~~~g~dv~~~L~~al~r~~l-~v~v~aivNDtvatlla~~y~------------ 241 (289)
+++.|++...+...++ .|. .+ .+.|++.+ ++ | +.+.||..+..+++.+.
T Consensus 62 g~pG~vd~~~i~~~n~-~w~----------~~-~~~l~~~~---~~p~---v~l~ND~~aaalgE~~~~~~~~~~~g~~~ 123 (316)
T PRK00292 62 AIAGPVDGDEVRMTNH-HWA----------FS-IAAMKQEL---GLDH---LLLINDFTAQALAIPRLGEEDLVQIGGGE 123 (316)
T ss_pred EEeCcccCCEEEecCC-Ccc----------cC-HHHHHHHh---CCCe---EEEEecHHHHHcccccCCHhheeEeCCCC
Confidence 9999996432222233 353 22 47777777 77 4 78999999999998752
Q ss_pred --CCCcEEEEEEccCccceeeecccccCcccCCCCCCCceEEEc
Q 022975 242 --NKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVSKL 283 (289)
Q Consensus 242 --~~~~~iglIlGTG~Na~yie~~~~i~k~~~~~~~~~~miIN~ 283 (289)
..+..+.+.+|||++++++.+. +.+..+.++|.|||.++.
T Consensus 124 ~~~~~~~~~v~~GTGiG~giv~~g--~~g~~g~agE~GH~~~~~ 165 (316)
T PRK00292 124 PVPGAPIAVIGPGTGLGVAGLVPV--DGRWIVLPGEGGHVDFAP 165 (316)
T ss_pred CCCCCcEEEEEcCCcceEEEEEec--CCceEEccCCcccccCCC
Confidence 1267899999999999999887 666666778999998853
No 19
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=99.11 E-value=2.1e-10 Score=117.54 Aligned_cols=146 Identities=20% Similarity=0.270 Sum_probs=94.1
Q ss_pred ccEEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCCcccCCchhHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeee
Q 022975 95 GLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGF 174 (289)
Q Consensus 95 G~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~ 174 (289)
|-+|++|+||||+|+++++-+|+ +.. ...+|+.. ++.+.+.|.+|+++.+. .+...+||
T Consensus 18 ~~~L~iDIGGT~ir~al~~~~g~---i~~----~~~~~t~~--------~~~~~~~i~~~l~~~~~------~~~~~igi 76 (638)
T PRK14101 18 GPRLLADVGGTNARFALETGPGE---ITQ----IRVYPGAD--------YPTLTDAIRKYLKDVKI------GRVNHAAI 76 (638)
T ss_pred CCEEEEEcCchhheeeeecCCCc---ccc----eeEEecCC--------CCCHHHHHHHHHHhcCC------CCcceEEE
Confidence 45999999999999999965553 332 23344421 24466667777776532 13578999
Q ss_pred eeeeeeeeccCCceEEEecccceeccCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHhhcc--------cc----cC
Q 022975 175 TFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGG--------RY----HN 242 (289)
Q Consensus 175 tfSfP~~q~~~~~~~Li~wtKgf~~~~~~g~dv~~~L~~al~r~~l~v~v~aivNDtvatlla~--------~y----~~ 242 (289)
+++.|++.......++ .|. .++ +.|++.| |+| ++.+.||..+..++. .+ .+
T Consensus 77 g~pGpVd~~~~~~~nl-~w~----------~~~-~~l~~~~---g~~--~v~l~ND~~aaA~ge~~l~~~e~~~~G~g~~ 139 (638)
T PRK14101 77 AIANPVDGDQVRMTNH-DWS----------FSI-EATRRAL---GFD--TLLVVNDFTALAMALPGLTDAQRVQVGGGTR 139 (638)
T ss_pred EEecCccCCeeeecCC-CcE----------ecH-HHHHHHc---CCC--eEEEEchHHHHHcCCccCCHHHeEEeCCCCC
Confidence 9999997543333343 463 244 6777777 764 479999999999995 23 23
Q ss_pred CCcEEEEEEccCccce---ee-ecccccCcccCCCCCCCceEEE
Q 022975 243 KDAIAAVILGTGTNAA---YV-ERAHAIPKWHGLLPKSGEMVSK 282 (289)
Q Consensus 243 ~~~~iglIlGTG~Na~---yi-e~~~~i~k~~~~~~~~~~miIN 282 (289)
.+..+.+++||||+.+ .+ .+.+.+. ..+|.|||.+.
T Consensus 140 ~~~~~~~~lGtGTGlG~a~lv~~~g~~~~----~g~E~GH~~~~ 179 (638)
T PRK14101 140 RQNSVIGLLGPGTGLGVSGLIPADDRWIA----LGSEGGHASFA 179 (638)
T ss_pred CCCCcEEEEECCccceeeEEEecCCeeEE----CCCCccccCCC
Confidence 3557889987766444 32 4443222 12477888774
No 20
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=99.10 E-value=3.3e-10 Score=106.54 Aligned_cols=146 Identities=17% Similarity=0.225 Sum_probs=91.1
Q ss_pred EEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCCcccCCchhHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeeeeee
Q 022975 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFS 177 (289)
Q Consensus 98 LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~tfS 177 (289)
|++|+||||+|+++++.++. .+.. .+.++. +.++.+.+.|.+|+++...... ......|++.+
T Consensus 1 l~~DIGGT~i~~glvd~~g~---~l~~----~~~~~~-------~~~~~l~~~i~~~l~~~~~~~~---~~~~~~~Igi~ 63 (316)
T TIGR00749 1 LVGDIGGTNARLALCEIAPG---EISQ----AKTYSG-------LDFPSLEAVVRVYLEEHKVELK---DPIAKGCFAIA 63 (316)
T ss_pred CeEecCcceeeEEEEecCCC---ceee----eEEEec-------CCCCCHHHHHHHHHHhcccccC---CCcCeEEEEEe
Confidence 68999999999999987654 1211 111111 1245566666667665432110 12345889999
Q ss_pred eeeeeccCCceEEEecccceeccCCCCCcHHHHHHHHHHHcCC-CceEEEEEechHHHhhcc--------ccc----CCC
Q 022975 178 FPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGL-DMRVAALVNDTIGTLAGG--------RYH----NKD 244 (289)
Q Consensus 178 fP~~q~~~~~~~Li~wtKgf~~~~~~g~dv~~~L~~al~r~~l-~v~v~aivNDtvatlla~--------~y~----~~~ 244 (289)
.|++.......++ .|. .++. .|++.+ ++ | +.+.||..+..+++ .+. ..+
T Consensus 64 Gpv~~~~v~~~nl-~w~----------~~~~-~l~~~~---g~~~---V~l~ND~naaa~ge~~l~~~~~~~~g~~~~~~ 125 (316)
T TIGR00749 64 CPITGDWVAMTNH-TWA----------FSIA-ELKQNL---GFSH---LEIINDFTAVSYAIPGLKKEDLIQFGGAEPVE 125 (316)
T ss_pred CcccCCEEEecCC-CCe----------eCHH-HHHHhc---CCCe---EEEEecHHHHHcCCCCCCHHHeEEeCCCCCCC
Confidence 9984432332333 463 4564 777766 76 5 89999999999997 553 346
Q ss_pred cEEEEEEccCccce--eee---cccccCcccCCCCCCCceEEE
Q 022975 245 AIAAVILGTGTNAA--YVE---RAHAIPKWHGLLPKSGEMVSK 282 (289)
Q Consensus 245 ~~iglIlGTG~Na~--yie---~~~~i~k~~~~~~~~~~miIN 282 (289)
..+.+++||||..+ .+. +.+.+ ..++|.|||.+.
T Consensus 126 ~~~~v~lGtGtG~G~~~vi~~~~g~l~----~~agE~GH~~~~ 164 (316)
T TIGR00749 126 GKPIAILGAGTGLGVAHLIHQVDGRWV----VLPGEGGHVDFA 164 (316)
T ss_pred CCcEEEEecCCCceeeEEEEcCCCCEE----ECCCCcccccCC
Confidence 67899997776444 355 44433 345689999884
No 21
>PTZ00288 glucokinase 1; Provisional
Probab=98.91 E-value=4.3e-08 Score=95.56 Aligned_cols=184 Identities=17% Similarity=0.178 Sum_probs=118.0
Q ss_pred HHHHHHHHHHhhccCCCCcceeeecccccCCCCcccccEEEEeeCCceEEEEEEEeC--CCcceeEEeeeEEeecCCCcc
Q 022975 59 ADAMTVEMHAGLASEGGSKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLG--GREGRVVKQEFEEVSIPPHLM 136 (289)
Q Consensus 59 ~~~f~~em~~gL~~~~~s~~~Mlps~v~~lP~G~E~G~~LaiDlGGTnlRv~~V~l~--g~~~~~~~~~~~~~~Ip~~~~ 136 (289)
...|.+++.+-|.++. +|-. -++++++|+||||.|+++.++. +... +.. ...+.+ +.
T Consensus 5 ~~~~~~~~~~~~~~~~--------~~~~-------~~~~~~~DiGgt~~R~~~~~~~~~~~~~-~~~---~~~~~~--~~ 63 (405)
T PTZ00288 5 DEIFLEQLAEELKTDA--------SWSS-------GPIFVGCDVGGTNARVGFAREVQHDDSG-VHI---IYVRFN--VT 63 (405)
T ss_pred hHHHHHHHHHHhccCc--------cccc-------CCeEEEEEecCCceEEEEEeccCCCCCc-eeE---EEEecc--cc
Confidence 3456677777776642 2321 2358999999999999999983 2211 111 234444 12
Q ss_pred cCCchhHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeeeeeeeeeeeccCCceEEEecccceeccCCCCCcHHHHHHHHHH
Q 022975 137 TGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAME 216 (289)
Q Consensus 137 ~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~tfSfP~~q~~~~~~~Li~wtKgf~~~~~~g~dv~~~L~~al~ 216 (289)
..+..++.+++++.+....+....- ..+....|.+..|+...... |.+.+|+..+.+++. ...+
T Consensus 64 ~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~iAvAGPV~~~~~~-~~~~~~~~~~~lTNl-pw~i--------- 127 (405)
T PTZ00288 64 KTDIRELLEFFDEVLQKLKKNLSFI-----QRVAAGAISVPGPVTGGQLA-GPFNNLKGIARLTDY-PVEL--------- 127 (405)
T ss_pred cccHHHHHHHHHHHHHHHHhcCccc-----cCcCeEEEEEeCceeCCEee-ccccccccccccCCC-Cchh---------
Confidence 2345678888888777665532210 13445678888899653332 455678766555553 1111
Q ss_pred HcCCCceEEEEEechHHHhhccccc--------------------------------CCCcEEEEEEccCccceeeeccc
Q 022975 217 RIGLDMRVAALVNDTIGTLAGGRYH--------------------------------NKDAIAAVILGTGTNAAYVERAH 264 (289)
Q Consensus 217 r~~l~v~v~aivNDtvatlla~~y~--------------------------------~~~~~iglIlGTG~Na~yie~~~ 264 (289)
++..-+.++||=.|..++.... .....+.+..|||.++|++.+..
T Consensus 128 ---~~~~~~~liNDfeA~aygi~~l~~~~~~~~~f~~~~~~~~~~~l~~~~~~g~~~~~~~~~Vlg~GTGLG~alli~~~ 204 (405)
T PTZ00288 128 ---FPPGRSALLNDLEAGAYGVLAVSNAGRLSEYFKVMWKGTQWDALSEGKPAGSVIGRGRCMVLAPGTGLGSSLIHYVG 204 (405)
T ss_pred ---cCCCeEEEEEhHHHHhCcccccChhhcccccccccccccceeeecCCCCCcccCCCCCEEEEEeccceeEEEEECCe
Confidence 3444589999988777775431 12345889999999999999888
Q ss_pred ccCcccCCCCCCCceEEE
Q 022975 265 AIPKWHGLLPKSGEMVSK 282 (289)
Q Consensus 265 ~i~k~~~~~~~~~~miIN 282 (289)
.+.++....+|.|||.++
T Consensus 205 l~~G~~~~agEgGHv~~~ 222 (405)
T PTZ00288 205 VSDQYIVIPLECGHLSIS 222 (405)
T ss_pred ecCCcccccccccceeec
Confidence 777877777899999983
No 22
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=98.72 E-value=3.8e-08 Score=76.42 Aligned_cols=98 Identities=15% Similarity=0.205 Sum_probs=63.7
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCCcccCCchhHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeeee
Q 022975 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFT 175 (289)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~t 175 (289)
++||||+|||++++++++-+|+ +.. ...++.. .+.+++++.+.+.+.++ . +..+|+.
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~~g~---~~~----~~~~~~~---~~~~~~~~~l~~~i~~~----~---------~~~i~Ig 58 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDETGK---LAD----PLEVIPR---TNKEADAARLKKLIKKY----Q---------PDLIVIG 58 (99)
T ss_pred cEEEEccCCCeEEEEEECCCCC---Eec----CEEEEEe---cCcchHHHHHHHHHHHh----C---------CCEEEEe
Confidence 4899999999999999987665 232 1222221 13456777777766553 1 2457777
Q ss_pred eeeeeeeccCCceEEEecccceeccCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHhhc
Q 022975 176 FSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAG 237 (289)
Q Consensus 176 fSfP~~q~~~~~~~Li~wtKgf~~~~~~g~dv~~~L~~al~r~~l~v~v~aivNDtvatlla 237 (289)
+++|++.. ....|. .++.+.|++.+ ++| +.+.||+.+|..+
T Consensus 59 ~pg~v~g~-----~~~~~~----------~~l~~~l~~~~---~~p---v~~~nDa~st~~a 99 (99)
T smart00732 59 LPLNMNGT-----ASRETE----------EAFAELLKERF---NLP---VVLVDERLATVYA 99 (99)
T ss_pred CCcCCCCC-----cCHHHH----------HHHHHHHHHhh---CCc---EEEEeCCcccccC
Confidence 77777321 111242 56778888766 888 8999999877653
No 23
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=97.72 E-value=0.00065 Score=62.23 Aligned_cols=128 Identities=20% Similarity=0.183 Sum_probs=78.0
Q ss_pred EEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCCcccCCchhHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeeeeee
Q 022975 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFS 177 (289)
Q Consensus 98 LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~tfS 177 (289)
|+||.|||..|+.+++.+|+ ++. +...-|........++..+.|.+-+.+.+++.+... .+...+.++.+
T Consensus 1 lGIDgGgTkt~~vl~d~~g~---il~---~~~~~~~n~~~~~~~~~~~~i~~~i~~~~~~~~~~~----~~i~~~~~g~a 70 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDENGN---ILG---RGKGGGANYNSVGFEEAMENIKEAIEEALSQAGLSP----DDIAAICIGAA 70 (271)
T ss_dssp EEEEECSSEEEEEEEETTSE---EEE---EEEES-TTHHHHHHHHHHHHHHHHHHHHHHHHTTST----TCCCEEEEEEE
T ss_pred CEEeeChheeeeEEEeCCCC---EEE---EEEeCCCCCCCCCcchhhhHHHHHHHHHHHHcCCCc----cccceeeeeEe
Confidence 79999999999999998775 332 123344444323456778888888899888876542 12122222222
Q ss_pred eeeeeccCCceEEEecccceeccCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHhhcccccCCCcEEEEEEccCccc
Q 022975 178 FPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNA 257 (289)
Q Consensus 178 fP~~q~~~~~~~Li~wtKgf~~~~~~g~dv~~~L~~al~r~~l~v~v~aivNDtvatlla~~y~~~~~~iglIlGTG~Na 257 (289)
+--.. + ..+.+.+.+-+. + +.+.||+...+.+..- +.-|-+|-|||+++
T Consensus 71 G~~~~------------------~-----~~~~~~~~~~~~--~---v~~~~Da~~al~~~~~---~~giv~I~GTGS~~ 119 (271)
T PF01869_consen 71 GYGRA------------------G-----DEQEFQEEIVRS--E---VIVVNDAAIALYGATA---EDGIVVIAGTGSIA 119 (271)
T ss_dssp EEEET------------------T-----TTTHHHHHHHHH--E---EEEEEHHHHHHHHHST---SSEEEEEESSSEEE
T ss_pred eecCc------------------c-----cccchhhcceEE--E---EEEEHHHHHHhCCCCC---CcEEEEEcCCCceE
Confidence 21111 1 111112222111 3 8999999887776544 46788999999999
Q ss_pred eeeeccccc
Q 022975 258 AYVERAHAI 266 (289)
Q Consensus 258 ~yie~~~~i 266 (289)
..+.+..++
T Consensus 120 ~~~~~~g~~ 128 (271)
T PF01869_consen 120 YGRDRDGRV 128 (271)
T ss_dssp EEEETTSEE
T ss_pred EEEEcCCcE
Confidence 999844333
No 24
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=97.53 E-value=0.0022 Score=59.80 Aligned_cols=142 Identities=21% Similarity=0.187 Sum_probs=89.9
Q ss_pred cccEEEEeeCCceEEEEEEEeCCCcc-eeEEeeeEEeecCCCcccCCchhHHHHHHHHHHHHHHhcCCCCCCCCCCeeee
Q 022975 94 KGLFYALDLGGTNFRVLRVQLGGREG-RVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQREL 172 (289)
Q Consensus 94 ~G~~LaiDlGGTnlRv~~V~l~g~~~-~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~l 172 (289)
.+.|.++|=|+|.-|+.+|+.+++.- +.+......|-|+ .+..-+.|++.|.+-.++.+.+.. +....+
T Consensus 2 ~~~y~GvEGgaT~s~~Vivd~~~~~~~~a~~~~Tnh~~ig-------~~~~~~rie~~i~~A~~k~g~d~~---~~lr~l 71 (336)
T KOG1794|consen 2 KDFYGGVEGGATCSRLVIVDEDGTILGRAVGGGTNHWLIG-------STTCASRIEDMIREAKEKAGWDKK---GPLRSL 71 (336)
T ss_pred CceeEeecCCcceeEEEEECCCCCEeeEeeccccccccCC-------chHHHHHHHHHHHHHHhhcCCCcc---Ccccee
Confidence 46899999999999999998776520 0111011123333 456778888888888877776532 224556
Q ss_pred eeeeeeeeeeccCCceEEEecccceeccCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHhhcccccCCCcEEEEEEc
Q 022975 173 GFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILG 252 (289)
Q Consensus 173 G~tfSfP~~q~~~~~~~Li~wtKgf~~~~~~g~dv~~~L~~al~r~~l~v~v~aivNDtvatlla~~y~~~~~~iglIlG 252 (289)
|+.+|.- +|.. .+.++++.|++.+ .-..+=..|.||+.++++++- .....-|-+|-|
T Consensus 72 gL~lSg~-d~e~------------------~~~~lv~~~R~~f---ps~ae~~~v~sDa~~sl~a~t-~g~~~GiVLiaG 128 (336)
T KOG1794|consen 72 GLGLSGT-DQED------------------KNRKLVTEFRDKF---PSVAENFYVTSDADGSLAAAT-PGGEGGIVLIAG 128 (336)
T ss_pred eeecccC-Cchh------------------HHHHHHHHHHHhc---cchhheeeeehhHHHHHhhcC-CCCCCcEEEEec
Confidence 6666542 2211 1244566665544 222333899999999998864 444556789999
Q ss_pred cCccceeeecccccCc
Q 022975 253 TGTNAAYVERAHAIPK 268 (289)
Q Consensus 253 TG~Na~yie~~~~i~k 268 (289)
||+||=-+.+.....+
T Consensus 129 Tgs~crl~~~DGs~~~ 144 (336)
T KOG1794|consen 129 TGSNCRLVNPDGSEKG 144 (336)
T ss_pred CCceeEEECCCCCccC
Confidence 9999877776555444
No 25
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=97.47 E-value=0.00022 Score=67.57 Aligned_cols=134 Identities=21% Similarity=0.239 Sum_probs=74.3
Q ss_pred EEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCCcccCCchhHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeeeeee
Q 022975 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFS 177 (289)
Q Consensus 98 LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~tfS 177 (289)
|+-|+||||-|+++++..+....... .+.|+- .+...+.+.|.+ |+++..... .++....|.+.
T Consensus 1 Lv~DIGGTn~Rlal~~~~~~~~~~~~--~~~~~~------~~~~s~~~~l~~----~l~~~~~~~----~~p~~~~iavA 64 (316)
T PF02685_consen 1 LVADIGGTNTRLALAEPDGGPLQLID--IRRYPS------ADFPSFEDALAD----YLAELDAGG----PEPDSACIAVA 64 (316)
T ss_dssp EEEEEETTEEEEEEEECTCGG-EEEE--EEEEEG------CCCCHHHHHHHH----HHHHTCHHH----TCEEEEEEEES
T ss_pred CeEEeCcccEEEEEEEcCCCCccccc--cEEEec------CCcCCHHHHHHH----HHHhcccCC----CccceEEEEEe
Confidence 67899999999999998765311221 122321 233445555544 444321110 23566899999
Q ss_pred eeeeeccCCceEEEecccceeccCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHhhccccc-------------C-C
Q 022975 178 FPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH-------------N-K 243 (289)
Q Consensus 178 fP~~q~~~~~~~Li~wtKgf~~~~~~g~dv~~~L~~al~r~~l~v~v~aivNDtvatlla~~y~-------------~-~ 243 (289)
.|+.... ..+.+|. +. .| .+.|++.| +++ -+.++||=.|..++.-.. . .
T Consensus 65 GPV~~~~---~~lTN~~--W~------i~-~~~l~~~l---g~~--~v~liNDfeA~a~gl~~L~~~~l~~l~~g~~~~~ 127 (316)
T PF02685_consen 65 GPVRDGK---VRLTNLP--WT------ID-ADELAQRL---GIP--RVRLINDFEAQAYGLPALDPEDLVTLQPGEPDPG 127 (316)
T ss_dssp S-EETTC---EE-SSSC--CE------EE-HHHCHCCC---T-T--CEEEEEHHHHHHHHHHHHHHCCECCHCCEESSTT
T ss_pred cCccCCE---EEecCCC--cc------cc-HHHHHHHh---CCc--eEEEEcccchheeccCCCCHHHeeeccCCCCCCC
Confidence 9997643 3443332 11 22 23333333 553 489999998777665441 1 2
Q ss_pred CcEEEEEEccCccceeeeccc
Q 022975 244 DAIAAVILGTGTNAAYVERAH 264 (289)
Q Consensus 244 ~~~iglIlGTG~Na~yie~~~ 264 (289)
....-+=.|||.|.|++.+..
T Consensus 128 ~~~~Vig~GTGLG~a~l~~~~ 148 (316)
T PF02685_consen 128 GPRAVIGPGTGLGVALLVPDG 148 (316)
T ss_dssp S-EEEEEESSSEEEEEEEEET
T ss_pred CcEEEEEcCCCcEEEEEEecC
Confidence 334444468888999998753
No 26
>PRK13318 pantothenate kinase; Reviewed
Probab=97.40 E-value=0.00017 Score=66.17 Aligned_cols=132 Identities=23% Similarity=0.213 Sum_probs=66.6
Q ss_pred EEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCCcccCCchhHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeeeee
Q 022975 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTF 176 (289)
Q Consensus 97 ~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~tf 176 (289)
+|+||+|||++|+++++ +++ +.. .+++|.... .+.+++.++ +.++++..+.+. .+ .-++.+
T Consensus 2 iL~IDIGnT~iK~al~d-~g~---i~~----~~~~~t~~~-~~~~~~~~~----l~~l~~~~~~~~----~~--i~~I~i 62 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYE-GGK---LVA----HWRISTDSR-RTADEYGVW----LKQLLGLSGLDP----ED--ITGIII 62 (258)
T ss_pred EEEEEECCCcEEEEEEE-CCE---EEE----EEEEeCCCC-CCHHHHHHH----HHHHHHHcCCCc----cc--CceEEE
Confidence 68999999999999998 442 332 455666443 234555544 455555544321 12 234444
Q ss_pred ee--eeeeccCCceEEEecccceeccCCCCCcHHHHHHHHHHHcCCCceEEEEEec--------hHHHhhcccccCCCcE
Q 022975 177 SF--PVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVND--------TIGTLAGGRYHNKDAI 246 (289)
Q Consensus 177 Sf--P~~q~~~~~~~Li~wtKgf~~~~~~g~dv~~~L~~al~r~~l~v~v~aivND--------tvatlla~~y~~~~~~ 246 (289)
|. |-....+. ..+..|- +.... +....+..+ +++ +.+-|| ..+..+.+.| +...
T Consensus 63 ssVvp~~~~~~~-~~~~~~~---~~~~~----~~~~~~~~~---gl~---~~y~np~~lG~DR~a~~~aa~~~~--~~~~ 126 (258)
T PRK13318 63 SSVVPSVMHSLE-RMCRKYF---NIEPL----VVVGPGVKT---GIN---IKVDNPKEVGADRIVNAVAAYELY--GGPL 126 (258)
T ss_pred EEecCchHHHHH-HHHHHHh---CCCCe----EEECCCcCC---CCc---eecCChhhcchHHHHHHHHHHHHc--CCCE
Confidence 44 32111111 0010110 00000 011111111 444 677777 4444444444 3467
Q ss_pred EEEEEccCccceeeecc
Q 022975 247 AAVILGTGTNAAYVERA 263 (289)
Q Consensus 247 iglIlGTG~Na~yie~~ 263 (289)
+-+-+||++...++.+.
T Consensus 127 ivid~GTA~t~d~v~~~ 143 (258)
T PRK13318 127 IVVDFGTATTFDVVSAK 143 (258)
T ss_pred EEEEcCCceEEEEEcCC
Confidence 88999999999888543
No 27
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=97.37 E-value=0.00095 Score=60.12 Aligned_cols=92 Identities=14% Similarity=0.281 Sum_probs=56.1
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCC---cccCCchhHHHHHHHHHHHHHHhcCCCCCCCCCCeeee
Q 022975 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPH---LMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQREL 172 (289)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~---~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~l 172 (289)
+||+||+|.|++|+++++.+|+ ++...+..++.... ....+.+++++.+.+++++.+++.+... .++..+
T Consensus 1 y~lgiDiGTts~K~~l~d~~g~---iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~----~~I~aI 73 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDEDGK---IVASASRPYPYYTPEPGWAEQDPDEIWEAICEALKELLSQAGIDP----EQIKAI 73 (245)
T ss_dssp EEEEEEECSSEEEEEEEETTSC---EEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHHCTSCG----GGEEEE
T ss_pred CEEEEEEcccceEEEEEeCCCC---EEEEEEEeeeeccccccccccChHHHHHHHHHHHHHHHhhcCccc----ceeEEE
Confidence 5899999999999999997665 44444333333221 1223688999999999999999874322 244445
Q ss_pred eeeee----eeeeeccCCceEEEecc
Q 022975 173 GFTFS----FPVRQTSIASGDLIKWT 194 (289)
Q Consensus 173 G~tfS----fP~~q~~~~~~~Li~wt 194 (289)
|++-- .++++.+-.-...+.|.
T Consensus 74 ~is~~~~~~v~~D~~~~pl~~~i~w~ 99 (245)
T PF00370_consen 74 GISGQGHGLVLLDKDGKPLRPAILWM 99 (245)
T ss_dssp EEEE-SSEEEEEETTSSBSSCEE-TT
T ss_pred EeccccCCcceecccccccccccccc
Confidence 54431 24444442223345565
No 28
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=97.31 E-value=0.0044 Score=59.60 Aligned_cols=161 Identities=9% Similarity=0.087 Sum_probs=84.8
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCCcccCCchhHHHHHH---HHHHHHHHhcCCCCCCCCCCeeee
Q 022975 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIA---AALAKFVATEGEGFHVSPGRQREL 172 (289)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia---~~I~~fl~~~~~~~~~~~~~~~~l 172 (289)
+.|+|..|||++|+++++-++. +... ...+..-..+..+.+.+.++ +.|.+++++++... .+...+
T Consensus 1 ~il~in~Gsts~k~alf~~~~~---~~~~----~~~~~~~~~~~~~~~~~q~~~r~~~i~~~l~~~~~~~----~~i~av 69 (351)
T TIGR02707 1 KILVINPGSTSTKLAVFEDERP---LFEE----TLRHSVEELGRFKNVIDQFEFRKQVILQFLEEHGISI----SKLDAV 69 (351)
T ss_pred CEEEEecCchhheEEEEeCCCc---eeee----eecCCHHHhcccccHHHHHHHHHHHHHHHHHHcCCCc----ccccEE
Confidence 3799999999999999987664 2321 11122111134557788888 88999999876432 122222
Q ss_pred eeeeeeeee-eccCCceEEEecccce-----eccC-CCCCcHHHHHHHHHHH-cCCCceEEEEEec---------hHHHh
Q 022975 173 GFTFSFPVR-QTSIASGDLIKWTKGF-----SIED-TVGEDVVGELTKAMER-IGLDMRVAALVND---------TIGTL 235 (289)
Q Consensus 173 G~tfSfP~~-q~~~~~~~Li~wtKgf-----~~~~-~~g~dv~~~L~~al~r-~~l~v~v~aivND---------tvatl 235 (289)
..-+.|+. .++ +. ..-+... +... .-=.++...+-..+.+ .++| .++.|| +..+.
T Consensus 70 -~~RgG~~~~v~G---g~-~~v~~~~~~~l~~~~~~~~~hn~~~~~~~~~~~~~~~p---~~vfDt~fh~~~~~~a~~~a 141 (351)
T TIGR02707 70 -VGRGGLLKPIPG---GT-YLVNEAMLEDLKSGKRGEHASNLGAIIANELADELNIP---AYIVDPVVVDEMEDVARISG 141 (351)
T ss_pred -EECCCCCceecc---ee-EEECHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHcCCC---EEEcCChhhhcChHHHHHhc
Confidence 12223331 111 11 0000000 0000 0002222222222222 2666 357777 33333
Q ss_pred hccc------------c----------cC--CCcEEEEEEccCccceeeecccccCcccCCCCC
Q 022975 236 AGGR------------Y----------HN--KDAIAAVILGTGTNAAYVERAHAIPKWHGLLPK 275 (289)
Q Consensus 236 la~~------------y----------~~--~~~~iglIlGTG~Na~yie~~~~i~k~~~~~~~ 275 (289)
+.+. | .+ ....|.+.||||+.+|.+.+++.+.+..+..+|
T Consensus 142 lpe~~RrygfHgls~~~v~~~~~~~~g~~~~~~~~I~~hLGtGig~~ai~~Gk~vdgs~G~agE 205 (351)
T TIGR02707 142 LPEIERKSIFHALNQKAVARRIAKELGKRYEEMNLIVAHMGGGISVAAHRKGRVIDVNNALDGE 205 (351)
T ss_pred cchhhhhhchhhhhHHHHHHHHHHHcCCCcccCCEEEEEeCCCceeeeEECCEEEEcCCCCCCc
Confidence 3211 1 12 348999999999999999999888776664444
No 29
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=97.01 E-value=0.003 Score=62.38 Aligned_cols=76 Identities=17% Similarity=0.265 Sum_probs=52.5
Q ss_pred EEEeeCCceEEEEEEEeCCCcceeEEeeeEEeec---CCCcccCCchhHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeee
Q 022975 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI---PPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGF 174 (289)
Q Consensus 98 LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~I---p~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~ 174 (289)
|+||+|.|++|+++++++|+ ++...+..++. ++.....+.+++++.+++++++++++.+... .+...+|+
T Consensus 1 lgIDiGtt~ik~~l~d~~g~---i~~~~~~~~~~~~~~~g~~e~d~~~~~~~l~~~i~~~~~~~~~~~----~~I~gIgv 73 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQGE---VIASGSAPHTVISPHPGWSEQDPEDWWDATEEAIKELLEQASEMG----QDIKGIGI 73 (481)
T ss_pred CceeecCcceEEEEECCCCC---EEEEEeecccccCCCCCCeeeCHHHHHHHHHHHHHHHHHhcCCCc----ccEEEEEE
Confidence 58999999999999998886 44333333321 1111124577899999999999998876432 34667777
Q ss_pred e--eeeee
Q 022975 175 T--FSFPV 180 (289)
Q Consensus 175 t--fSfP~ 180 (289)
+ .+.++
T Consensus 74 s~~~~g~v 81 (481)
T TIGR01312 74 SGQMHGLV 81 (481)
T ss_pred ecCCceeE
Confidence 7 66666
No 30
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=96.65 E-value=0.0085 Score=59.92 Aligned_cols=61 Identities=13% Similarity=0.292 Sum_probs=43.3
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEeeeEEee--cCC-CcccCCchhHHHHHHHHHHHHHHhcC
Q 022975 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVS--IPP-HLMTGSSHELFDYIAAALAKFVATEG 159 (289)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~--Ip~-~~~~~~~~~lfd~Ia~~I~~fl~~~~ 159 (289)
++||||+|+|++|+++++.+|+ ++...+.+++ .|. .....+.+++++.+.+++++.+++.+
T Consensus 1 ~~lgiDiGtt~~K~~l~d~~g~---i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~ 64 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEENGK---IVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREVSINLE 64 (505)
T ss_pred CEEEEeccccceEEEEEcCCCC---EEEEEEeecccccCCCCCeeeCHHHHHHHHHHHHHHHHHhCC
Confidence 4799999999999999998775 4444433333 111 12224677899999999999988654
No 31
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=96.64 E-value=0.0085 Score=60.58 Aligned_cols=73 Identities=16% Similarity=0.281 Sum_probs=49.7
Q ss_pred EEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeec--CC-CcccCCchhHHHHHHHHHHHHHHhcCCCCCCCCCCeeeee
Q 022975 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--PP-HLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELG 173 (289)
Q Consensus 97 ~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~I--p~-~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG 173 (289)
+|+||+|+|+.|+++++.+|+ ++...+..++. |. .....+.+++++-+.+++++.+++.+... +++..+|
T Consensus 2 ~lgID~GTts~Ka~l~d~~G~---i~~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~~~~~~----~~I~~Ig 74 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDSTGD---ILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVLAESKVDP----NSVKGIG 74 (541)
T ss_pred EEEEEecCcCEEEEEEcCCCC---EEEEEEeeeeeccCCCCcccCCHHHHHHHHHHHHHHHHHHcCCCh----hheEEEE
Confidence 799999999999999998775 44433333332 22 22234677899999999999998765432 2345555
Q ss_pred eee
Q 022975 174 FTF 176 (289)
Q Consensus 174 ~tf 176 (289)
++.
T Consensus 75 is~ 77 (541)
T TIGR01315 75 FDA 77 (541)
T ss_pred ecc
Confidence 554
No 32
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=96.64 E-value=0.0072 Score=60.25 Aligned_cols=62 Identities=21% Similarity=0.350 Sum_probs=44.0
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeec--CCC-cccCCchhHHHHHHHHHHHHHHhcCC
Q 022975 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--PPH-LMTGSSHELFDYIAAALAKFVATEGE 160 (289)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~I--p~~-~~~~~~~~lfd~Ia~~I~~fl~~~~~ 160 (289)
++|+||+|+|++|+++++.+|+ ++...+..++. |.. ....+.+++++.+.+++++.+++.+.
T Consensus 2 ~~lgiDiGtt~iKa~l~d~~g~---~l~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~ 66 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFDKDGN---IVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEALAKAGI 66 (493)
T ss_pred eEEEEecCCCceEEEEECCCCC---EEEEEeeeccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCC
Confidence 5899999999999999998775 34333333322 211 11235678999999999999988654
No 33
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=96.59 E-value=0.033 Score=52.39 Aligned_cols=124 Identities=22% Similarity=0.236 Sum_probs=78.6
Q ss_pred cccEEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCCcccCCchhHHHHHHHHHHHHHHhcCCCCCCCCCCeeeee
Q 022975 94 KGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELG 173 (289)
Q Consensus 94 ~G~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG 173 (289)
.-+||+||=|||..|..+.+.+|+ ++-+ -..=|.++.+...++-+.-|.+-|.+.+.+.+.++ ..++
T Consensus 4 ~~~~lGVDGGGTkt~a~l~~~~g~---vlg~---g~sGpAN~~~~~~e~A~~ni~~ai~~A~~~aG~~~-------~~i~ 70 (301)
T COG2971 4 MPYFLGVDGGGTKTRAVLADEDGN---VLGR---GKSGPANIQLVGKEEAVRNIKDAIREALDEAGLKP-------DEIA 70 (301)
T ss_pred ccEEEEEccCCcceEEEEEcCCCc---EEEE---eccCCceecccchHHHHHHHHHHHHHHHHhcCCCH-------HHhC
Confidence 347999999999999999987775 4432 23346666655558899999999999998877653 1111
Q ss_pred eeeeeeeeeccCCceEEEecccceeccCCCCCcHHHHHHHHHHHcCCCce-EEEEEechHHHhhcccccCCCcEEEEEEc
Q 022975 174 FTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMR-VAALVNDTIGTLAGGRYHNKDAIAAVILG 252 (289)
Q Consensus 174 ~tfSfP~~q~~~~~~~Li~wtKgf~~~~~~g~dv~~~L~~al~r~~l~v~-v~aivNDtvatlla~~y~~~~~~iglIlG 252 (289)
++.+.-- ..|.+.... ...+ .+.+|+- -+.+.||...+|.++-..++. +-+|.|
T Consensus 71 --~~~agla-------------------~ag~~~~~~-~~~~-~~~l~~a~~v~v~~Dg~iAl~ga~~~~~G--ii~i~G 125 (301)
T COG2971 71 --AIVAGLA-------------------LAGANVEEA-REEL-ERLLPFAGKVDVENDGLIALRGALGDDDG--IIVIAG 125 (301)
T ss_pred --ceeeeee-------------------ccCcchhHH-HHHH-HHhcCccceEEEecChHHHHhhccCCCCC--EEEEec
Confidence 2211110 011221111 1111 2245654 589999999999988665544 356788
Q ss_pred cCc
Q 022975 253 TGT 255 (289)
Q Consensus 253 TG~ 255 (289)
||+
T Consensus 126 TGS 128 (301)
T COG2971 126 TGS 128 (301)
T ss_pred CCe
Confidence 885
No 34
>PRK13321 pantothenate kinase; Reviewed
Probab=96.48 E-value=0.0025 Score=58.40 Aligned_cols=48 Identities=21% Similarity=0.376 Sum_probs=31.8
Q ss_pred EEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCCcccCCchhHHHHHHHHHHH
Q 022975 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAK 153 (289)
Q Consensus 97 ~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~I~~ 153 (289)
+|+||+|||++|+++++ +++ +.. .+++|+... .+.+++++.+.+.+.+
T Consensus 2 iL~IDIGnT~ik~gl~~-~~~---i~~----~~~~~T~~~-~~~~~~~~~l~~l~~~ 49 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFD-GDR---LLR----SFRLPTDKS-RTSDELGILLLSLFRH 49 (256)
T ss_pred EEEEEECCCeEEEEEEE-CCE---EEE----EEEEecCCC-CCHHHHHHHHHHHHHH
Confidence 68999999999999997 332 332 466776543 3445666666554443
No 35
>PRK00047 glpK glycerol kinase; Provisional
Probab=96.46 E-value=0.011 Score=58.96 Aligned_cols=62 Identities=23% Similarity=0.344 Sum_probs=44.5
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEeeeEEee--cCCC-cccCCchhHHHHHHHHHHHHHHhcCC
Q 022975 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVS--IPPH-LMTGSSHELFDYIAAALAKFVATEGE 160 (289)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~--Ip~~-~~~~~~~~lfd~Ia~~I~~fl~~~~~ 160 (289)
++|+||+|+|++|+++++.+|+ ++...+..++ .|.. ....+.+++++-+.+++++.+++.+.
T Consensus 6 ~~lgiD~GTts~Ka~l~d~~g~---~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~ 70 (498)
T PRK00047 6 YILALDQGTTSSRAIIFDHDGN---IVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEALAKAGI 70 (498)
T ss_pred EEEEEecCCCceEEEEECCCCC---EEEEEeeeccccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcCC
Confidence 5899999999999999998775 3433333443 2221 11236778999999999999987654
No 36
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=96.40 E-value=0.013 Score=58.80 Aligned_cols=62 Identities=18% Similarity=0.210 Sum_probs=44.8
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecC-----CCcccCCchhHHHHHHHHHHHHHHhcCC
Q 022975 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIP-----PHLMTGSSHELFDYIAAALAKFVATEGE 160 (289)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip-----~~~~~~~~~~lfd~Ia~~I~~fl~~~~~ 160 (289)
++|+||+|.|+.|+++++.+|+ ++...+..++.+ +.....+.+++++.+.+++++.+++.+.
T Consensus 4 ~~lgID~GTts~Ka~l~d~~G~---~l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~~~~~~~~ 70 (520)
T PRK10939 4 YLMALDAGTGSIRAVIFDLNGN---QIAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQALQKAGI 70 (520)
T ss_pred EEEEEecCCCceEEEEECCCCC---EEEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHHHHHHcCC
Confidence 6899999999999999998875 344333344322 1122236778999999999999977543
No 37
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=96.35 E-value=0.013 Score=59.03 Aligned_cols=62 Identities=19% Similarity=0.265 Sum_probs=46.5
Q ss_pred cEEEEeeCCceEEEEEEE-eCCCcceeEEeeeEEee-------cC-------CCcccCCchhHHHHHHHHHHHHHHhcCC
Q 022975 96 LFYALDLGGTNFRVLRVQ-LGGREGRVVKQEFEEVS-------IP-------PHLMTGSSHELFDYIAAALAKFVATEGE 160 (289)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~-l~g~~~~~~~~~~~~~~-------Ip-------~~~~~~~~~~lfd~Ia~~I~~fl~~~~~ 160 (289)
++|+||+|.|+.|+++++ .+|+ ++...+..++ .| ......+.+++++-+.+++++.+++.+.
T Consensus 2 ~~lgiD~GTss~Ka~l~d~~~G~---~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~~~~~~~~~~~ 78 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDVATGE---EIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAAIPTVLAELGV 78 (536)
T ss_pred eEEEEecCCCceEEEEEECCCCc---EeeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHHHHHHHHHcCC
Confidence 589999999999999999 8886 4444444554 23 2233456889999999999999987653
No 38
>PRK15027 xylulokinase; Provisional
Probab=96.33 E-value=0.017 Score=57.43 Aligned_cols=71 Identities=18% Similarity=0.389 Sum_probs=49.9
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeec--C-CCcccCCchhHHHHHHHHHHHHHHhcCCCCCCCCCCeeee
Q 022975 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--P-PHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQREL 172 (289)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~I--p-~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~l 172 (289)
.||+||+|.|++|+++++.+|+ ++...+..+++ | ......+.+++++.+.+++++.+++... +++..+
T Consensus 1 ~~lgID~GTts~Ka~l~d~~G~---vva~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~~~~------~~I~aI 71 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNEQGE---VVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQHSL------QDVKAL 71 (484)
T ss_pred CEEEEEecccceEEEEEcCCCC---EEEEEeecccccCCCCCccccCHHHHHHHHHHHHHHHHHhCCc------cceeEE
Confidence 4899999999999999998775 55544445543 2 1222346778999999999999976522 245556
Q ss_pred eee
Q 022975 173 GFT 175 (289)
Q Consensus 173 G~t 175 (289)
|++
T Consensus 72 ~is 74 (484)
T PRK15027 72 GIA 74 (484)
T ss_pred EEe
Confidence 664
No 39
>PRK10331 L-fuculokinase; Provisional
Probab=96.07 E-value=0.026 Score=55.97 Aligned_cols=60 Identities=20% Similarity=0.254 Sum_probs=43.0
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEeeeEEee--c--CC-CcccCCchhHHHHHHHHHHHHHHhc
Q 022975 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVS--I--PP-HLMTGSSHELFDYIAAALAKFVATE 158 (289)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~--I--p~-~~~~~~~~~lfd~Ia~~I~~fl~~~ 158 (289)
.+|+||+|.|+.|+++++.+|+ ++...+..++ + |. .....+.+++++-+.+++++.+++.
T Consensus 3 ~~lgID~GTt~~Ka~l~d~~G~---~~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~~~~ 67 (470)
T PRK10331 3 VILVLDCGATNVRAIAVDRQGK---IVARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINSEL 67 (470)
T ss_pred eEEEEecCCCceEEEEEcCCCc---EEEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHhC
Confidence 6899999999999999998875 4443333332 1 11 1223467789999999999998754
No 40
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=96.07 E-value=0.041 Score=51.72 Aligned_cols=144 Identities=19% Similarity=0.292 Sum_probs=81.8
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCCcccCCchhHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeeee
Q 022975 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFT 175 (289)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~t 175 (289)
..|+=|+||||.|+++|...... ..+ + +.+...+ |.-+.+.|++|+.++.. ..+..-.|.
T Consensus 7 p~LvgDIGGTnaRfaLv~~a~~~--~~~-------~-~~~~~~d----ypsle~av~~yl~~~~~------~~~~~a~~A 66 (320)
T COG0837 7 PRLVGDIGGTNARFALVEIAPAE--PLQ-------A-ETYACAD----YPSLEEAVQDYLSEHTA------VAPRSACFA 66 (320)
T ss_pred ceEEEecCCcceEEEEeccCCCC--ccc-------c-ceecccC----cCCHHHHHHHHHHHhhc------cCccceEEE
Confidence 35666999999999999875431 111 0 1222112 34456667778777622 234557788
Q ss_pred eeeeeeeccCCceEEEecccceeccCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHhhcccccC-------------
Q 022975 176 FSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHN------------- 242 (289)
Q Consensus 176 fSfP~~q~~~~~~~Li~wtKgf~~~~~~g~dv~~~L~~al~r~~l~v~v~aivNDtvatlla~~y~~------------- 242 (289)
.-.|+.-.-+.-.+. .|. .+. +.+++.| |++ -+.++||=.+..++-....
T Consensus 67 iAgPv~gd~v~lTN~-~W~----------~s~-~~~r~~L---gl~--~v~liNDF~A~A~Ai~~l~~~dl~qigg~~~~ 129 (320)
T COG0837 67 IAGPIDGDEVRLTNH-DWV----------FSI-ARMRAEL---GLD--HLSLINDFAAQALAIPRLGAEDLEQIGGGKPE 129 (320)
T ss_pred EecCccCCEEeeecC-ccc----------ccH-HHHHHhc---CCC--cEEEechHHHHHhhccccCHHHHHHhcCCCCC
Confidence 888885533222222 565 222 2333444 553 4899999998888876632
Q ss_pred CCcEEEEEE--ccCccceeeecccccCcccCCCCCCCce
Q 022975 243 KDAIAAVIL--GTGTNAAYVERAHAIPKWHGLLPKSGEM 279 (289)
Q Consensus 243 ~~~~iglIl--GTG~Na~yie~~~~i~k~~~~~~~~~~m 279 (289)
++.-+ .|+ |||.+.|++.+...= |....+|.||+
T Consensus 130 ~~a~~-avlGPGTGLGVa~Lv~~~~~--w~~lp~EGGHv 165 (320)
T COG0837 130 PNAPR-AVLGPGTGLGVAGLVPNGGG--WIPLPGEGGHV 165 (320)
T ss_pred CCCce-EEEcCCCCcceEEEEecCCe--eEeccCCCccc
Confidence 12222 344 566688888765431 33333455664
No 41
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=95.86 E-value=0.036 Score=55.57 Aligned_cols=63 Identities=19% Similarity=0.270 Sum_probs=45.6
Q ss_pred ccEEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCC---cccCCchhHHHHHHHHHHHHHHhcC
Q 022975 95 GLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPH---LMTGSSHELFDYIAAALAKFVATEG 159 (289)
Q Consensus 95 G~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~---~~~~~~~~lfd~Ia~~I~~fl~~~~ 159 (289)
.+||+||+|.|+.|+.+++.++. .++......+..... ....+.+++++.+.++|++.+++..
T Consensus 4 ~~~lgIDiGTt~~Kavl~d~~~~--~~~~~~~~~~~~~~~~~g~~e~d~~~~w~~~~~ai~~l~~~~~ 69 (502)
T COG1070 4 KYVLGIDIGTTSVKAVLFDEDGG--EVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEESK 69 (502)
T ss_pred cEEEEEEcCCCcEEEEEEeCCCC--eEEEEeeccccccCCCCCCcccCHHHHHHHHHHHHHHHHHhcc
Confidence 46999999999999999999841 244433333333321 2235788999999999999999864
No 42
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=95.78 E-value=0.038 Score=55.27 Aligned_cols=61 Identities=16% Similarity=0.230 Sum_probs=44.0
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeec--C-CCcccCCchhHHHHHHHHHHHHHHhcC
Q 022975 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--P-PHLMTGSSHELFDYIAAALAKFVATEG 159 (289)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~I--p-~~~~~~~~~~lfd~Ia~~I~~fl~~~~ 159 (289)
.+|+||+|.|++|+++++.+|+ ++...+..++. | +.....+.+++++-+.+++++.+++..
T Consensus 3 ~~lgiDiGTts~Ka~l~d~~G~---~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~ 66 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDEKGN---VVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMNEAIKKLR 66 (504)
T ss_pred EEEEEecCCCceEEEEECCCCC---EEEEEEEeecccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcC
Confidence 5899999999999999998775 44444344432 1 112224677899999999999988754
No 43
>PRK04123 ribulokinase; Provisional
Probab=95.61 E-value=0.055 Score=54.72 Aligned_cols=62 Identities=19% Similarity=0.281 Sum_probs=43.3
Q ss_pred cEEEEeeCCceEEEEEEEe-CCCcceeEEeeeEEeec--------CC-CcccCCchhHHHHHHHHHHHHHHhcCC
Q 022975 96 LFYALDLGGTNFRVLRVQL-GGREGRVVKQEFEEVSI--------PP-HLMTGSSHELFDYIAAALAKFVATEGE 160 (289)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l-~g~~~~~~~~~~~~~~I--------p~-~~~~~~~~~lfd~Ia~~I~~fl~~~~~ 160 (289)
+|||||+|.|+.|+++++. +|+ ++...+..++. |. .....+.+++++-+.+++++.+++.+.
T Consensus 4 ~~lgiD~GTts~Ka~l~d~~~g~---~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~~~~~ 75 (548)
T PRK04123 4 YVIGLDFGTDSVRALLVDCATGE---ELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLKEAGV 75 (548)
T ss_pred EEEEEecCCCceEEEEEECCCCc---EeEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHHHHHcCC
Confidence 6899999999999999995 775 34333334431 21 112235677899999999998876554
No 44
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=95.60 E-value=0.046 Score=54.14 Aligned_cols=59 Identities=15% Similarity=0.260 Sum_probs=42.4
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeec----C-CCcccCCchhHHHHHHHHHHHHHHh
Q 022975 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI----P-PHLMTGSSHELFDYIAAALAKFVAT 157 (289)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~I----p-~~~~~~~~~~lfd~Ia~~I~~fl~~ 157 (289)
.+|+||+|.|+.|+++++.+|+ ++...+.+++. | +.....+.+++++.+.+++++.+.+
T Consensus 2 ~ilgiD~GTss~K~~l~d~~g~---~va~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~ 65 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINRQGK---IVASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQINSE 65 (465)
T ss_pred eEEEEecCCCcEEEEEEcCCCC---EEEEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHHhh
Confidence 4799999999999999998775 44444333331 1 1222346778999999999999864
No 45
>PLN02295 glycerol kinase
Probab=95.37 E-value=0.058 Score=54.13 Aligned_cols=62 Identities=19% Similarity=0.257 Sum_probs=45.0
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeec--CC-CcccCCchhHHHHHHHHHHHHHHhcCC
Q 022975 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--PP-HLMTGSSHELFDYIAAALAKFVATEGE 160 (289)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~I--p~-~~~~~~~~~lfd~Ia~~I~~fl~~~~~ 160 (289)
.+|+||+|.|++|+++++.+|+ ++...+..+++ |. .....+.+++++-+.++|++.+++.+.
T Consensus 1 ~vlgID~GTts~Ka~l~d~~G~---~~~~~~~~~~~~~~~~G~~Eqdp~~~w~~~~~~i~~~~~~~~~ 65 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDRDAR---PVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKALEKAAA 65 (512)
T ss_pred CEEEEecCCCceEEEEECCCCC---EEEEEeecccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCC
Confidence 4799999999999999998776 34333333432 22 222346789999999999999987654
No 46
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=94.48 E-value=0.29 Score=49.38 Aligned_cols=97 Identities=18% Similarity=0.183 Sum_probs=62.4
Q ss_pred cccEEEEeeCCceEEEEEEE-eCCCcceeEEeeeEEeecCC-CcccCCchhHHHHHHHHHHHHHHhcCCCCCCCCCCeee
Q 022975 94 KGLFYALDLGGTNFRVLRVQ-LGGREGRVVKQEFEEVSIPP-HLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRE 171 (289)
Q Consensus 94 ~G~~LaiDlGGTnlRv~~V~-l~g~~~~~~~~~~~~~~Ip~-~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~ 171 (289)
...+++||+|-|+-|+++++ -+|+... ..+......-|+ .....+..+++.-+.+||+...++-... ....
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~~~e~l~-~~~~~i~~~~~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~------~~~~ 77 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAKNGELLS-LAQKEITQEFPKEGWVEQDPKEIWQAVCRCIEKACEKLGVL------NIKV 77 (516)
T ss_pred cceEEEEEcCCCceEEEEEecCCCccce-eeeeeeeeecCCCCeEEeCHHHHHHHHHHHHHHHHHhhccc------cccc
Confidence 46799999999999999998 3444211 111111111222 2334578999999999999988876543 2455
Q ss_pred eeeeeeeeeeeccCCceEEEecccceeccC
Q 022975 172 LGFTFSFPVRQTSIASGDLIKWTKGFSIED 201 (289)
Q Consensus 172 lG~tfSfP~~q~~~~~~~Li~wtKgf~~~~ 201 (289)
.|++.+.-+.|. ...+-|.|...-+.
T Consensus 78 ~~~~~igv~~qr----~~~v~w~~~tg~p~ 103 (516)
T KOG2517|consen 78 VGATCIGVVNQR----EGSVLWNKRTGEPL 103 (516)
T ss_pred cccEEEEEEecC----CceEEeecCCCCcc
Confidence 668888888773 34446776654443
No 47
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=93.41 E-value=6.2 Score=37.80 Aligned_cols=57 Identities=21% Similarity=0.324 Sum_probs=39.1
Q ss_pred CcHHHHHHHHHHHcCCCceEEEEEechHHHhhccccc--CCCcEEEEEEccCc-cceeeecc
Q 022975 205 EDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH--NKDAIAAVILGTGT-NAAYVERA 263 (289)
Q Consensus 205 ~dv~~~L~~al~r~~l~v~v~aivNDtvatlla~~y~--~~~~~iglIlGTG~-Na~yie~~ 263 (289)
++..+.+.++++..|++ +..++++..|+..+.... .+...+-+=+|.|+ +.+.+.+.
T Consensus 157 ~~~v~~~~~~~~~aGl~--~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g 216 (371)
T TIGR01174 157 STILRNLVKCVERCGLE--VDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGG 216 (371)
T ss_pred HHHHHHHHHHHHHcCCC--eeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECC
Confidence 45677777888877765 478899999888764332 23455666688888 66666544
No 48
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=92.60 E-value=0.44 Score=43.21 Aligned_cols=50 Identities=16% Similarity=0.309 Sum_probs=32.4
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCCcccCCchhHHHHHHHHHHHHHHhcCC
Q 022975 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGE 160 (289)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~ 160 (289)
.+++||+|.|+.|+++++ +|+ ++... + .++ ++.++-+++.+.+.+++.+.
T Consensus 1 ~~lGIDiGtts~K~vl~d-~g~---il~~~---~-~~~-------~~~~~~~~~~l~~~~~~~~~ 50 (248)
T TIGR00241 1 ISLGIDSGSTTTKMVLME-DGK---VIGYK---W-LDT-------TPVIEETARAILEALKEAGI 50 (248)
T ss_pred CEEEEEcChhheEEEEEc-CCE---EEEEE---E-ecC-------CCCHHHHHHHHHHHHHHcCC
Confidence 378999999999999997 553 44322 2 222 23455566777777765543
No 49
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=92.30 E-value=0.57 Score=47.33 Aligned_cols=80 Identities=15% Similarity=0.149 Sum_probs=55.0
Q ss_pred ccEEEEeeCCceEEEEEEEeC-CCcceeEEeeeEEeecCCCcccCCchhHHHHHHHHHHHHHHhcCCCCCCCCCCeeeee
Q 022975 95 GLFYALDLGGTNFRVLRVQLG-GREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELG 173 (289)
Q Consensus 95 G~~LaiDlGGTnlRv~~V~l~-g~~~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG 173 (289)
-++|+||+|--+-|+++++.. |+.-.........+.++.....-.+++.++-++..|.+.+++.+.++ ....|
T Consensus 3 ~~~iGvDvGTgSaRA~v~D~~~G~~la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~agv~~------~~V~g 76 (544)
T COG1069 3 AYVIGVDVGTGSARAGVFDCQTGTLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVAKAGVDP------ADVVG 76 (544)
T ss_pred cEEEEEeecCCceeEEEEEcCCCcchhhcccceeccccCccccccCHHHHHHHHHHHHHHHHHHcCCCh------hHeeE
Confidence 468999999999999999997 65211011111233444444446789999999999999999988763 34455
Q ss_pred eeeeeee
Q 022975 174 FTFSFPV 180 (289)
Q Consensus 174 ~tfSfP~ 180 (289)
++|.+-|
T Consensus 77 IGvDaTc 83 (544)
T COG1069 77 IGVDATC 83 (544)
T ss_pred EEEccee
Confidence 5555555
No 50
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=92.12 E-value=0.38 Score=47.99 Aligned_cols=88 Identities=22% Similarity=0.346 Sum_probs=63.4
Q ss_pred cccEEEEeeCCceEEEEEEEeCCCcceeEEeee-EEeecCCCcccCCchhHHHHHHHHHHHHHHhcCCCCCCCCCCeeee
Q 022975 94 KGLFYALDLGGTNFRVLRVQLGGREGRVVKQEF-EEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQREL 172 (289)
Q Consensus 94 ~G~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~-~~~~Ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~l 172 (289)
..++++||-|-|+.|..+++-+|+--.+.+... +.|+-|--+ ..+..+++.-...++.+.+.+.+... .++..+
T Consensus 4 ~~yIlAiDqGTTssRaivfd~~g~iva~~q~e~~Q~yP~~GWV-EhDp~eIw~~~~~~l~~a~~~~~i~~----~~iaaI 78 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDEDGNIVAIAQREFTQIYPQPGWV-EHDPLEIWASVRSVLKEALAKAGIKP----GEIAAI 78 (499)
T ss_pred ccEEEEEecCCcceeEEEECCCCCchhhhhhhhhhhCCCCCcc-ccCHHHHHHHHHHHHHHHHHHcCCCc----cceEEE
Confidence 468999999999999999988876321111111 235555444 46889999999999999999886653 567888
Q ss_pred eeeeeeeeeeccCCceEEEeccc
Q 022975 173 GFTFSFPVRQTSIASGDLIKWTK 195 (289)
Q Consensus 173 G~tfSfP~~q~~~~~~~Li~wtK 195 (289)
|+| +| +.+.+-|.|
T Consensus 79 GIT-----NQ----RETtvvWdk 92 (499)
T COG0554 79 GIT-----NQ----RETTVVWDK 92 (499)
T ss_pred Eee-----cc----ceeEEEEeC
Confidence 887 44 456667776
No 51
>PRK03011 butyrate kinase; Provisional
Probab=91.98 E-value=1.5 Score=42.32 Aligned_cols=161 Identities=11% Similarity=0.155 Sum_probs=83.2
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCC-ccc-CCchhHHHHHHHHHHHHHHhcCCCCCCCCCCeeeee
Q 022975 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPH-LMT-GSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELG 173 (289)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~-~~~-~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG 173 (289)
++|+|+-|.|+-|+++.+- + ..+.. +....+.+ +.. .+..+=++|=.+.|.+++++++... .+...++
T Consensus 3 ~il~inpgststk~a~~~~--~-~~~~~---~~~~h~~~~~~~~~~~~~q~~~r~~~i~~~l~~~g~~~----~~l~av~ 72 (358)
T PRK03011 3 RILVINPGSTSTKIAVFED--E-KPIFE---ETLRHSAEELEKFKTIIDQYEFRKQAILDFLKEHGIDL----SELDAVV 72 (358)
T ss_pred EEEEEcCCCchheEEEEcC--C-ceeee---eccccCHHHHhcCCCccchHHHHHHHHHHHHHHcCCCh----hcceEEE
Confidence 5899999999999999952 2 12332 12222221 211 1233567777888899999876542 1222221
Q ss_pred eeeeeeee--ecc---CCceEEEecccceeccCCCCCcHHHHHHHHHHH-cCCCceEEEEEec-----------------
Q 022975 174 FTFSFPVR--QTS---IASGDLIKWTKGFSIEDTVGEDVVGELTKAMER-IGLDMRVAALVND----------------- 230 (289)
Q Consensus 174 ~tfSfP~~--q~~---~~~~~Li~wtKgf~~~~~~g~dv~~~L~~al~r-~~l~v~v~aivND----------------- 230 (289)
.=+..+. +.+ ++...+-.-.+.-.. .-=.++..++-..+.+ .++| ++++|+
T Consensus 73 -~RgG~~~~v~gG~~~v~~~~~~~l~~~~~~--~~~~nl~~~~a~~~~~~~~~p---~~v~D~~~~~~~~~~a~~~~lp~ 146 (358)
T PRK03011 73 -GRGGLLKPIPGGTYRVNEAMLEDLKNGKYG--EHASNLGAIIAYEIAKELGIP---AFIVDPVVVDEMEPVARISGLPE 146 (358)
T ss_pred -EcCCCCcccCCCCEEcCHHHHHHHHhcCCC--CCCCCHHHHHHHHHHHhcCCC---EEEECCcccccCCHHHHHcCCCC
Confidence 1111111 100 000000000000000 0012334444333333 3777 577887
Q ss_pred ---------hHHHhhcccc-----c--CCCcEEEEEEccCccceeeecccccCcccCC
Q 022975 231 ---------TIGTLAGGRY-----H--NKDAIAAVILGTGTNAAYVERAHAIPKWHGL 272 (289)
Q Consensus 231 ---------tvatlla~~y-----~--~~~~~iglIlGTG~Na~yie~~~~i~k~~~~ 272 (289)
..--.++.++ . +....|.+.+|||+.+|.+.+++.+.+..+.
T Consensus 147 i~R~~gfHgln~~~va~~~a~~~g~~~~~~n~I~~hLGtGig~gai~~Gk~idgs~g~ 204 (358)
T PRK03011 147 IERKSIFHALNQKAVARRVAKELGKKYEELNLIVAHLGGGISVGAHRKGRVIDVNNAL 204 (358)
T ss_pred cceeecchHHhHHHHHHHHHHHhCCCcccCcEEEEEeCCCceeeEEECCEEEecCCcc
Confidence 3333444444 1 2458899999999999999999888765553
No 52
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=91.47 E-value=0.44 Score=47.06 Aligned_cols=59 Identities=19% Similarity=0.065 Sum_probs=37.1
Q ss_pred EEEeeCCceEEEEEEEeCCCcceeE-EeeeEEeecCCCc---ccCCchhHHHHHHHHHHHHHH
Q 022975 98 YALDLGGTNFRVLRVQLGGREGRVV-KQEFEEVSIPPHL---MTGSSHELFDYIAAALAKFVA 156 (289)
Q Consensus 98 LaiDlGGTnlRv~~V~l~g~~~~~~-~~~~~~~~Ip~~~---~~~~~~~lfd~Ia~~I~~fl~ 156 (289)
||||+|.|+.|+.+++.+++.+++. ...++..+...+. ...+.+++++.+.+++++..+
T Consensus 1 ~aiD~Gtt~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~ 63 (454)
T TIGR02627 1 VAVDLGASSGRVMLASYENECQKLTLEEIHRFKNGLVSQNGHECWDIDALEQEIRLGLNKVDA 63 (454)
T ss_pred CcEeccCCchheEEEEEcCCCceEEEEEEEeCCCCCEeECCEEEEehHHHHHHHHHHHHHHhc
Confidence 6899999999999999985533333 2222221111111 112455789999999988865
No 53
>PLN02669 xylulokinase
Probab=91.13 E-value=0.87 Score=46.43 Aligned_cols=63 Identities=17% Similarity=0.255 Sum_probs=39.5
Q ss_pred cCCCCcccccEEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeec--CCCc----ccCCch----------hHHHHHHHH
Q 022975 87 NLPTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--PPHL----MTGSSH----------ELFDYIAAA 150 (289)
Q Consensus 87 ~lP~G~E~G~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~I--p~~~----~~~~~~----------~lfd~Ia~~ 150 (289)
+||. ...||+||+|.|++|+.+++.+|+ ++...+..+.. |..- ...+.+ ..++-+..+
T Consensus 3 ~~~~---~~~~LGiD~GT~s~Ka~l~d~~g~---vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~ 76 (556)
T PLN02669 3 SLPE---DSLFLGFDSSTQSLKATVLDSNLR---IVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLL 76 (556)
T ss_pred CCCC---CCeEEEEecccCCeEEEEEcCCCC---EEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHH
Confidence 3554 346999999999999999998776 44443334331 2111 011222 455888888
Q ss_pred HHHHH
Q 022975 151 LAKFV 155 (289)
Q Consensus 151 I~~fl 155 (289)
+++.+
T Consensus 77 l~~l~ 81 (556)
T PLN02669 77 LQKLA 81 (556)
T ss_pred HHHHH
Confidence 88876
No 54
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=91.06 E-value=2.2 Score=40.18 Aligned_cols=64 Identities=19% Similarity=0.381 Sum_probs=40.7
Q ss_pred ccEEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCCcccCCchhHHHHHHHHHHHHHHhcCC
Q 022975 95 GLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGE 160 (289)
Q Consensus 95 G~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~ 160 (289)
..++|||+|.+++|+..++-.++.-.+. .....+.|......+.-.=.+-+++.|++.+++.+.
T Consensus 3 ~~~vgiDIg~~~Ik~v~~~~~~~~~~v~--~~~~~~~p~~~i~~g~i~d~~~~~~~l~~~~~~~~~ 66 (348)
T TIGR01175 3 SLLVGIDIGSTSVKVAQLKRSGDRYKLE--HYAVEPLPAGIFTEGHIVEYQAVAEALKELLSELGI 66 (348)
T ss_pred CcEEEEEeccCeEEEEEEEecCCceEEE--EEEEEECCCCcccCCCccCHHHHHHHHHHHHHHcCC
Confidence 3589999999999999888655432232 233566776543222111235677888888887654
No 55
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=89.23 E-value=6.5 Score=36.13 Aligned_cols=138 Identities=19% Similarity=0.236 Sum_probs=73.7
Q ss_pred CCCcccccEEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCCcccCCchhHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 022975 89 PTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGR 168 (289)
Q Consensus 89 P~G~E~G~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~ 168 (289)
|.-+..+.+++||+|-|++|+...+..++ .+.. -...+..++.+...+ ++-....|..+++....... .+
T Consensus 18 ~~~~~~~~~~~iDiGSssi~~vv~~~~~~---~~~~---~~~~~~~vr~G~i~d-i~~a~~~i~~~~~~ae~~~g---~~ 87 (267)
T PRK15080 18 PVATESPLKVGVDLGTANIVLAVLDEDGQ---PVAG---ALEWADVVRDGIVVD-FIGAVTIVRRLKATLEEKLG---RE 87 (267)
T ss_pred CCCCCCCEEEEEEccCceEEEEEEcCCCC---EEEE---EeccccccCCCEEee-HHHHHHHHHHHHHHHHHHhC---CC
Confidence 34456778999999999999988765443 2221 111222333332222 56666677777663211000 01
Q ss_pred eeeeeeeeeeeeeeccCCceEEEecccceeccCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHhhcccccCCCcEEE
Q 022975 169 QRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAA 248 (289)
Q Consensus 169 ~~~lG~tfSfP~~q~~~~~~~Li~wtKgf~~~~~~g~dv~~~L~~al~r~~l~v~v~aivNDtvatlla~~y~~~~~~ig 248 (289)
...+ ..+.|..++. .+ ...+.+++++.|++ +..++++..|+..+..+. + .+=
T Consensus 88 i~~v--~~~vp~~~~~--------------------~~-~~~~~~~~~~aGl~--~~~ii~e~~A~a~~~~~~--~-~~v 139 (267)
T PRK15080 88 LTHA--ATAIPPGTSE--------------------GD-PRAIINVVESAGLE--VTHVLDEPTAAAAVLGID--N-GAV 139 (267)
T ss_pred cCeE--EEEeCCCCCc--------------------hh-HHHHHHHHHHcCCc--eEEEechHHHHHHHhCCC--C-cEE
Confidence 1112 2245543321 11 22355777777876 467899998877653222 2 344
Q ss_pred EEEccCc-cceeeeccc
Q 022975 249 VILGTGT-NAAYVERAH 264 (289)
Q Consensus 249 lIlGTG~-Na~yie~~~ 264 (289)
+=+|-|+ +.+.+.+..
T Consensus 140 vDIGggtt~i~v~~~g~ 156 (267)
T PRK15080 140 VDIGGGTTGISILKDGK 156 (267)
T ss_pred EEeCCCcEEEEEEECCe
Confidence 5566666 666665543
No 56
>PRK13324 pantothenate kinase; Reviewed
Probab=85.41 E-value=8.5 Score=35.50 Aligned_cols=46 Identities=17% Similarity=0.410 Sum_probs=30.4
Q ss_pred EEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCC-CcccCCchhHHHHHHHHH
Q 022975 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPP-HLMTGSSHELFDYIAAAL 151 (289)
Q Consensus 97 ~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~-~~~~~~~~~lfd~Ia~~I 151 (289)
+|+||+|-||+++++.+ ++ ... ..++++. +.. .+.++++-++...+
T Consensus 2 iL~iDiGNT~ik~gl~~--~~--~~~----~~~r~~t~~~~-~t~de~~~~l~~~~ 48 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFD--GD--RIV----SQIRYATSSVD-STSDQMGVFLRQAL 48 (258)
T ss_pred EEEEEeCCCceEEEEEE--CC--EEE----EEEEEecCccc-cchHHHHHHHHHHH
Confidence 68999999999999997 22 133 2467776 443 45566665555433
No 57
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=84.45 E-value=13 Score=32.08 Aligned_cols=57 Identities=18% Similarity=0.317 Sum_probs=34.1
Q ss_pred EEEEeeCCceEEEEEEEeCCCcc-eeEEeeeEEeecCCC-cccCCchhHHHHHHHHHHHHHHhc
Q 022975 97 FYALDLGGTNFRVLRVQLGGREG-RVVKQEFEEVSIPPH-LMTGSSHELFDYIAAALAKFVATE 158 (289)
Q Consensus 97 ~LaiDlGGTnlRv~~V~l~g~~~-~~~~~~~~~~~Ip~~-~~~~~~~~lfd~Ia~~I~~fl~~~ 158 (289)
|.+||+|-+++++...+..+++. .+.. .-..|.. +..|.-.+ ++-+++.|++.+++.
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g----~~~~~s~gi~~G~I~d-~~~~~~~I~~ai~~a 59 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDEDGEINVIG----VGEVPSRGIRKGVIVD-IEAAARAIREAVEEA 59 (187)
T ss_pred CEEEEeccceEEEEEEEEcCCCCEEEEE----EEEecCCCccCcEEEC-HHHHHHHHHHHHHHH
Confidence 57999999999999998875432 2332 1223543 44443333 445566666666544
No 58
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=83.38 E-value=25 Score=31.93 Aligned_cols=46 Identities=17% Similarity=0.295 Sum_probs=32.6
Q ss_pred EEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCCcccCCchhHHHHHHHHHH
Q 022975 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALA 152 (289)
Q Consensus 98 LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~I~ 152 (289)
|+||+|-||+++++.+ ++ ++. ..|++|+... .+.+++..++...+.
T Consensus 2 L~iDiGNT~i~~g~~~--~~--~~~----~~~r~~t~~~-~t~de~~~~l~~~~~ 47 (243)
T TIGR00671 2 LLIDVGNTRIVFALNS--GN--KVY----QFWRLATNLM-KTYDEHSEFLKELFG 47 (243)
T ss_pred EEEEECCCcEEEEEEE--CC--EEE----EEEEecCCCc-cChHHHHHHHHHHHH
Confidence 7899999999999996 22 233 2578887766 567777766655443
No 59
>PRK13410 molecular chaperone DnaK; Provisional
Probab=82.86 E-value=3.3 Score=43.28 Aligned_cols=49 Identities=20% Similarity=0.301 Sum_probs=29.6
Q ss_pred HHHHHHHcCCCceEEEEEechHHHhhcccccC--CCcEEEEEEccCc-cceeee
Q 022975 211 LTKAMERIGLDMRVAALVNDTIGTLAGGRYHN--KDAIAAVILGTGT-NAAYVE 261 (289)
Q Consensus 211 L~~al~r~~l~v~v~aivNDtvatlla~~y~~--~~~~iglIlGTG~-Na~yie 261 (289)
+.+|.+..|++ +..|+|+.+|+.++-.... +..++=+=+|-|| .++.++
T Consensus 154 ~~~Aa~~AGl~--v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~ 205 (668)
T PRK13410 154 TRDAGRIAGLE--VERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLE 205 (668)
T ss_pred HHHHHHHcCCC--eEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEE
Confidence 33444444554 5889999999998755532 3344444467777 455544
No 60
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=82.45 E-value=7.6 Score=40.43 Aligned_cols=49 Identities=18% Similarity=0.270 Sum_probs=30.4
Q ss_pred HHHHHHHcCCCceEEEEEechHHHhhcccccC----CCcEEEEEEccCc-cceeee
Q 022975 211 LTKAMERIGLDMRVAALVNDTIGTLAGGRYHN----KDAIAAVILGTGT-NAAYVE 261 (289)
Q Consensus 211 L~~al~r~~l~v~v~aivNDtvatlla~~y~~----~~~~iglIlGTG~-Na~yie 261 (289)
+.+|.+..|++ ++.|+|+.+|+.++..+.. +..++=+=+|-|+ .++.++
T Consensus 159 ~~~Aa~~AGl~--v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~ 212 (653)
T PTZ00009 159 TKDAGTIAGLN--VLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLT 212 (653)
T ss_pred HHHHHHHcCCc--eeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEE
Confidence 33444444554 5899999999999765532 3445555577777 455543
No 61
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=81.33 E-value=6.6 Score=41.04 Aligned_cols=38 Identities=26% Similarity=0.310 Sum_probs=25.7
Q ss_pred EEEEEechHHHhhcccccC--CCcEEEEEEccCc-cceeee
Q 022975 224 VAALVNDTIGTLAGGRYHN--KDAIAAVILGTGT-NAAYVE 261 (289)
Q Consensus 224 v~aivNDtvatlla~~y~~--~~~~iglIlGTG~-Na~yie 261 (289)
++.|+|+.+|+.++..+.. +..++=+=||-|| ..+.++
T Consensus 190 v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~ 230 (657)
T PTZ00186 190 VIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLE 230 (657)
T ss_pred eEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEE
Confidence 6899999999998755532 3444445577777 555554
No 62
>CHL00094 dnaK heat shock protein 70
Probab=78.88 E-value=5.4 Score=41.23 Aligned_cols=47 Identities=23% Similarity=0.347 Sum_probs=28.1
Q ss_pred HHHHHcCCCceEEEEEechHHHhhcccccC--CCcEEEEEEccCc-cceeee
Q 022975 213 KAMERIGLDMRVAALVNDTIGTLAGGRYHN--KDAIAAVILGTGT-NAAYVE 261 (289)
Q Consensus 213 ~al~r~~l~v~v~aivNDtvatlla~~y~~--~~~~iglIlGTG~-Na~yie 261 (289)
+|.+..|++ ++.++|+.+|+.++-.... +..++=+=+|-|+ ..+.++
T Consensus 156 ~Aa~~AGl~--v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~ 205 (621)
T CHL00094 156 DAGKIAGLE--VLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILE 205 (621)
T ss_pred HHHHHcCCc--eEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEE
Confidence 333333543 5899999999998754432 2333334467777 555554
No 63
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=78.66 E-value=6 Score=41.28 Aligned_cols=47 Identities=28% Similarity=0.349 Sum_probs=28.7
Q ss_pred HHHHHcCCCceEEEEEechHHHhhccccc--CCCcEEEEEEccCc-cceeee
Q 022975 213 KAMERIGLDMRVAALVNDTIGTLAGGRYH--NKDAIAAVILGTGT-NAAYVE 261 (289)
Q Consensus 213 ~al~r~~l~v~v~aivNDtvatlla~~y~--~~~~~iglIlGTG~-Na~yie 261 (289)
+|.+..|++ ++.++|+.+|+.++.... .+..++=+=+|-|+ .++.++
T Consensus 195 ~Aa~~AGl~--v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~ 244 (663)
T PTZ00400 195 DAGKIAGLD--VLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILE 244 (663)
T ss_pred HHHHHcCCc--eEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEE
Confidence 333333544 589999999999976553 23444444467776 455443
No 64
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=75.44 E-value=5.8 Score=41.00 Aligned_cols=51 Identities=24% Similarity=0.296 Sum_probs=30.6
Q ss_pred HHHHHHHHHcCCCceEEEEEechHHHhhcccccC--CCcEEEEEEccCc-cceeee
Q 022975 209 GELTKAMERIGLDMRVAALVNDTIGTLAGGRYHN--KDAIAAVILGTGT-NAAYVE 261 (289)
Q Consensus 209 ~~L~~al~r~~l~v~v~aivNDtvatlla~~y~~--~~~~iglIlGTG~-Na~yie 261 (289)
+.+.+|.+..|++ ++.++|+.+|+.++-.+.. +..++=+=+|-|| ..+.++
T Consensus 166 ~a~~~Aa~~AGl~--v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~ 219 (616)
T PRK05183 166 QATKDAARLAGLN--VLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILR 219 (616)
T ss_pred HHHHHHHHHcCCC--eEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEE
Confidence 3444555545655 5799999999988755432 2333334467676 555554
No 65
>PRK13411 molecular chaperone DnaK; Provisional
Probab=74.71 E-value=14 Score=38.50 Aligned_cols=48 Identities=21% Similarity=0.302 Sum_probs=28.1
Q ss_pred HHHHHHcCCCceEEEEEechHHHhhcccccC---CCcEEEEEEccCc-cceeee
Q 022975 212 TKAMERIGLDMRVAALVNDTIGTLAGGRYHN---KDAIAAVILGTGT-NAAYVE 261 (289)
Q Consensus 212 ~~al~r~~l~v~v~aivNDtvatlla~~y~~---~~~~iglIlGTG~-Na~yie 261 (289)
.+|.+..|++ ++.++|+.+|+.++..... ...++=+=+|-|| ..+.++
T Consensus 153 ~~Aa~~AGl~--v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~ 204 (653)
T PRK13411 153 KDAGTIAGLE--VLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQ 204 (653)
T ss_pred HHHHHHcCCC--eEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEE
Confidence 3344334543 5899999999998754421 2333334467776 444443
No 66
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=74.47 E-value=5.2 Score=41.30 Aligned_cols=49 Identities=22% Similarity=0.314 Sum_probs=28.5
Q ss_pred HHHHHHHcCCCceEEEEEechHHHhhcccccC--CCcEEEEEEccCc-cceeee
Q 022975 211 LTKAMERIGLDMRVAALVNDTIGTLAGGRYHN--KDAIAAVILGTGT-NAAYVE 261 (289)
Q Consensus 211 L~~al~r~~l~v~v~aivNDtvatlla~~y~~--~~~~iglIlGTG~-Na~yie 261 (289)
+.+|.+..|++ ++.++|+.+|+.++..+.. +..++=+=+|-|| ..+.++
T Consensus 152 ~~~Aa~~AGl~--v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~ 203 (627)
T PRK00290 152 TKDAGKIAGLE--VLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILE 203 (627)
T ss_pred HHHHHHHcCCc--eEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEE
Confidence 33444444554 5899999999988755432 2333334456665 444443
No 67
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=74.13 E-value=17 Score=34.47 Aligned_cols=61 Identities=15% Similarity=0.347 Sum_probs=37.0
Q ss_pred EEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCCcccCCchhHHHHHHHHHHHHHHhcCCC
Q 022975 99 ALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEG 161 (289)
Q Consensus 99 aiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~ 161 (289)
|||+|-.++|+..++-.++.-. + ...-..++|......+.-.=.+.+++.|++.+++++..
T Consensus 1 GiDiG~~siK~v~l~~~~~~~~-l-~~~~~~~~p~~~i~~g~i~d~~~l~~~L~~~~~~~~~~ 61 (340)
T PF11104_consen 1 GIDIGSSSIKAVELSKKGNRFQ-L-EAFASIPLPPGAISDGEIVDPEALAEALKELLKENKIK 61 (340)
T ss_dssp EEEE-SSEEEEEEEETTTT--E-E-EEEEEEE--TTSEETTEES-HHHHHHHHHHHHHHHT--
T ss_pred CeecCCCeEEEEEEEEcCCccE-E-EEEEEEECCCCCccCCCcCCHHHHHHHHHHHHHHcCCC
Confidence 7999999999999887655322 2 23356788887643222233567888888888887653
No 68
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=73.41 E-value=4.9 Score=39.55 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=20.6
Q ss_pred CCcccccEEEEeeCCceEEEEEEE
Q 022975 90 TGDEKGLFYALDLGGTNFRVLRVQ 113 (289)
Q Consensus 90 ~G~E~G~~LaiDlGGTnlRv~~V~ 113 (289)
.+..+|.|+|||+|+|+.++.+++
T Consensus 139 ~~~~~g~~lGIDiGSTttK~Vl~d 162 (404)
T TIGR03286 139 RERQEGLTLGIDSGSTTTKAVVME 162 (404)
T ss_pred hhccCCEEEEEEcChhheeeEEEc
Confidence 345677899999999999999986
No 69
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=72.99 E-value=9.2 Score=35.80 Aligned_cols=43 Identities=16% Similarity=0.298 Sum_probs=27.8
Q ss_pred EEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCCcccCCchhHHHHHHHHH
Q 022975 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAAL 151 (289)
Q Consensus 97 ~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~I 151 (289)
.++||+|||..|++..+.+++ .. ....|.+. .+++.+|+.+..
T Consensus 2 ~iGiDiGgT~~Kiv~~~~~~~---~~-----f~~~~~~~----~~~~~~~l~~~~ 44 (279)
T TIGR00555 2 RIGIDIGGTLIKVVYEEPKGR---RK-----FKTFETTN----IDKFIEWLKNQI 44 (279)
T ss_pred eEEEEeCcceEEEEEEcCCCc---EE-----EEEeeccc----HHHHHHHHHHHH
Confidence 589999999999998765554 22 22334332 347777776433
No 70
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=72.31 E-value=46 Score=29.98 Aligned_cols=51 Identities=20% Similarity=0.305 Sum_probs=32.7
Q ss_pred HHHHHHHHHcCCCceEEEEEechHHHhhcccccCCCcEEEEEEccCc-cceeeeccc
Q 022975 209 GELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGT-NAAYVERAH 264 (289)
Q Consensus 209 ~~L~~al~r~~l~v~v~aivNDtvatlla~~y~~~~~~iglIlGTG~-Na~yie~~~ 264 (289)
+.+.++++..|++ ++.++|+..|+.++... . ..+=+=+|.|+ +.+.+++..
T Consensus 78 ~a~~~a~~~aGl~--~~~li~ep~Aaa~~~~~--~-~~~vvDiGggtt~i~i~~~G~ 129 (239)
T TIGR02529 78 KVIVNVIESAGIE--VLHVLDEPTAAAAVLQI--K-NGAVVDVGGGTTGISILKKGK 129 (239)
T ss_pred HHHHHHHHHcCCc--eEEEeehHHHHHHHhcC--C-CcEEEEeCCCcEEEEEEECCe
Confidence 4566777777776 48999999988875322 2 23455566666 566665543
No 71
>PRK13326 pantothenate kinase; Reviewed
Probab=70.47 E-value=11 Score=34.79 Aligned_cols=45 Identities=16% Similarity=0.223 Sum_probs=31.3
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCCcccCCchhHHHHHHH
Q 022975 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAA 149 (289)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~ 149 (289)
..|+||+|-||+++++.+ +++ ++ ..|++++... .+.+++..++..
T Consensus 7 ~~L~IDiGNT~ik~glf~-~~~---l~----~~~r~~t~~~-~t~de~~~~l~~ 51 (262)
T PRK13326 7 SQLIIDIGNTSISFALYK-DNK---MQ----IFCKLKTKLD-LSFDELYSFLKE 51 (262)
T ss_pred EEEEEEeCCCeEEEEEEE-CCE---EE----EEEEeccCCC-CCHHHHHHHHhc
Confidence 379999999999999997 222 33 2467776554 566777666654
No 72
>PLN03184 chloroplast Hsp70; Provisional
Probab=69.11 E-value=15 Score=38.42 Aligned_cols=38 Identities=21% Similarity=0.376 Sum_probs=24.9
Q ss_pred EEEEEechHHHhhcccccC--CCcEEEEEEccCc-cceeee
Q 022975 224 VAALVNDTIGTLAGGRYHN--KDAIAAVILGTGT-NAAYVE 261 (289)
Q Consensus 224 v~aivNDtvatlla~~y~~--~~~~iglIlGTG~-Na~yie 261 (289)
++.++|+.+|+.++..+.. +..++=+=+|-|| ..+.++
T Consensus 202 v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~DvSi~~ 242 (673)
T PLN03184 202 VLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLE 242 (673)
T ss_pred eEEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEE
Confidence 6899999999998765532 3344444567776 455544
No 73
>PRK03657 hypothetical protein; Validated
Probab=65.87 E-value=25 Score=30.47 Aligned_cols=58 Identities=22% Similarity=0.433 Sum_probs=38.9
Q ss_pred HcCCCHHHHHH---HHHHHHHHHHHhhccCCCCcceeeecccccCCCCc----ccc-cEEEEeeCCc
Q 022975 47 KCGTPIGKLRQ---VADAMTVEMHAGLASEGGSKLKMLISYVDNLPTGD----EKG-LFYALDLGGT 105 (289)
Q Consensus 47 ~~~~~~~~L~~---i~~~f~~em~~gL~~~~~s~~~Mlps~v~~lP~G~----E~G-~~LaiDlGGT 105 (289)
.+.+|.+.|++ ++..-..+|-+|.....++++..--|-+.. |+|. +-| .|+|+...+.
T Consensus 70 lLgV~~~~i~~~gavS~e~A~~MA~g~~~~~~aDiala~TG~AG-P~g~~~~kpvGtV~iai~~~~~ 135 (170)
T PRK03657 70 ILSVSQQSLERYSAVSEAVVAEMATGAIERADADISIAISGYGG-PEGGEDGTPAGTVWFAWNIKGQ 135 (170)
T ss_pred hcCCCHHHHHhcCCCCHHHHHHHHHHHHHHcCCCEEEEeccccC-CCCCCCCCCCeEEEEEEEcCCc
Confidence 34577777776 777778888887765444677777777664 6643 445 4888876653
No 74
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=65.08 E-value=1.2e+02 Score=28.44 Aligned_cols=51 Identities=16% Similarity=0.217 Sum_probs=32.7
Q ss_pred HHHHHHHHHHcCCCceEEEEEechHHHhhcccccC--CCcEEEEEEccCc-cceee
Q 022975 208 VGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHN--KDAIAAVILGTGT-NAAYV 260 (289)
Q Consensus 208 ~~~L~~al~r~~l~v~v~aivNDtvatlla~~y~~--~~~~iglIlGTG~-Na~yi 260 (289)
.+.++++++..|++ .+.++|+.++++++..... +...+-+=+|.|+ ..+.+
T Consensus 114 r~~~~~~~~~ag~~--~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~gttdvs~v 167 (333)
T TIGR00904 114 RRAVKESALSAGAR--EVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGGGTTEVAVI 167 (333)
T ss_pred HHHHHHHHHHcCCC--eEEEecCHHHHHHhcCCcccCCceEEEEEcCCCeEEEEEE
Confidence 45577777766665 5899999999998765532 2333444466666 44444
No 75
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=63.98 E-value=21 Score=30.04 Aligned_cols=61 Identities=13% Similarity=0.140 Sum_probs=44.6
Q ss_pred EEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCCcccCCchhHHHHHHHHHHHHHHhcCCC
Q 022975 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEG 161 (289)
Q Consensus 97 ~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~ 161 (289)
..|++|=|+..+++++.+++..-.+......++.+++.. +.+++=+|-. .++.|++++..+
T Consensus 3 vCGVELkgneaii~ll~~~~~~~~~pdcr~~k~~l~~~~---~~~~vr~Fq~-~f~kl~~dy~Vd 63 (138)
T PF11215_consen 3 VCGVELKGNEAIICLLSLDDGLFQLPDCRVRKFSLSDDN---STEEVRKFQF-TFAKLMEDYKVD 63 (138)
T ss_pred EEEEEEecCeEEEEEEecCCCceECCccceeEEEcCCCc---cHHHHHHHHH-HHHHHHHHcCCC
Confidence 679999999999999998766444555556678888754 3455555544 478888888765
No 76
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=62.68 E-value=1.3e+02 Score=27.91 Aligned_cols=54 Identities=19% Similarity=0.227 Sum_probs=33.8
Q ss_pred HHHHHHHHHHcCCCceEEEEEechHHHhhcccccCC--CcEEEEEEccCc-cceeeecc
Q 022975 208 VGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNK--DAIAAVILGTGT-NAAYVERA 263 (289)
Q Consensus 208 ~~~L~~al~r~~l~v~v~aivNDtvatlla~~y~~~--~~~iglIlGTG~-Na~yie~~ 263 (289)
.+.+++++++.|++ .+.++|..++++++...... ...+-+=+|-|+ ..+.+...
T Consensus 116 r~~~~~~~e~~g~~--~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~gttdvs~v~~g 172 (335)
T PRK13930 116 RRAVREAAEHAGAR--EVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGGGTTEVAVISLG 172 (335)
T ss_pred HHHHHHHHHHcCCC--eEEecccHHHHHHhcCCCcCCCCceEEEEeCCCeEEEEEEEeC
Confidence 46677788766665 58999999999887655322 233444455555 44444433
No 77
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=62.52 E-value=1e+02 Score=31.95 Aligned_cols=53 Identities=21% Similarity=0.286 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHcCCCceEEEEEechHHHhhccccc--CCCcEEEEEEccCc-cceeee
Q 022975 207 VVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH--NKDAIAAVILGTGT-NAAYVE 261 (289)
Q Consensus 207 v~~~L~~al~r~~l~v~v~aivNDtvatlla~~y~--~~~~~iglIlGTG~-Na~yie 261 (289)
=.+.+.+|.+..|++ +..++|+.+|+.++-... .....+=+=+|-|| ..+.++
T Consensus 156 qR~a~~~Aa~~AGl~--v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~ 211 (595)
T PRK01433 156 ARGEVMLAAKIAGFE--VLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILN 211 (595)
T ss_pred HHHHHHHHHHHcCCC--EEEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEE
Confidence 345566676666776 589999999998875443 23344445567777 455544
No 78
>PRK13320 pantothenate kinase; Reviewed
Probab=62.22 E-value=24 Score=32.20 Aligned_cols=17 Identities=18% Similarity=0.358 Sum_probs=16.3
Q ss_pred EEEEeeCCceEEEEEEE
Q 022975 97 FYALDLGGTNFRVLRVQ 113 (289)
Q Consensus 97 ~LaiDlGGTnlRv~~V~ 113 (289)
+|.||+|.|+++.++++
T Consensus 4 ~L~iDiGNT~ik~~~~~ 20 (244)
T PRK13320 4 NLVIDIGNTTTKLAVFE 20 (244)
T ss_pred EEEEEeCCCcEEEEEEE
Confidence 79999999999999997
No 79
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=61.75 E-value=48 Score=27.50 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=16.5
Q ss_pred cccEEEEeeCCceEEEEEEEeCC
Q 022975 94 KGLFYALDLGGTNFRVLRVQLGG 116 (289)
Q Consensus 94 ~G~~LaiDlGGTnlRv~~V~l~g 116 (289)
.+.+||||+|-..+=+++-+..+
T Consensus 3 ~~~iLalD~G~kriGvAv~d~~~ 25 (138)
T PRK00109 3 SGRILGLDVGTKRIGVAVSDPLG 25 (138)
T ss_pred CCcEEEEEeCCCEEEEEEecCCC
Confidence 35699999998766666655433
No 80
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=60.98 E-value=52 Score=27.62 Aligned_cols=60 Identities=12% Similarity=0.068 Sum_probs=35.1
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCCcccCCchhHHHHHHHHHHHHHHhcCC
Q 022975 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGE 160 (289)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~ 160 (289)
++||||.|-+|+=+++++..++.-..+ .....+.+.+ .+..+=...|.+.|.++++++.+
T Consensus 1 rILGIDPGl~~~G~av~~~~~~~~~~~--~~g~i~t~~~---~~~~~rl~~I~~~l~~~i~~~~P 60 (154)
T cd00529 1 RILGIDPGSRNTGYGVIEQEGRKLIYL--ASGVIRTSSD---APLPSRLKTIYDGLNEVIDQFQP 60 (154)
T ss_pred CEEEEccCcCceEEEEEEeeCCeEEEE--EeeEEECCCC---CCHHHHHHHHHHHHHHHHHHhCC
Confidence 479999999999999998866421222 1122233321 12223345566666666666544
No 81
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=60.63 E-value=31 Score=28.55 Aligned_cols=102 Identities=14% Similarity=0.208 Sum_probs=55.3
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCCcccCCchhHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeeee
Q 022975 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFT 175 (289)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~t 175 (289)
++||||+|-..+=+++-+-.+.- ... .-.|+. .+.+.+++.|.+.+.+ + .+-++-
T Consensus 2 riL~lD~G~kriGiAvsd~~~~~---a~p---l~~i~~----~~~~~~~~~l~~li~~----~-----------~i~~iV 56 (135)
T PF03652_consen 2 RILGLDYGTKRIGIAVSDPLGII---ASP---LETIPR----RNREKDIEELKKLIEE----Y-----------QIDGIV 56 (135)
T ss_dssp EEEEEEECSSEEEEEEEETTTSS---EEE---EEEEEE----CCCCCCHHHHHHHHHH----C-----------CECEEE
T ss_pred eEEEEEeCCCeEEEEEecCCCCe---Eee---eEEEEC----CCCchHHHHHHHHHHH----h-----------CCCEEE
Confidence 58999999988888777665431 110 111221 2224566666655544 3 234677
Q ss_pred eeeeeeeccCCceEEEecccceeccCCCCCcHHHHHHHHHHHc--CCCceEEEEEechHHHhhcccc
Q 022975 176 FSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERI--GLDMRVAALVNDTIGTLAGGRY 240 (289)
Q Consensus 176 fSfP~~q~~~~~~~Li~wtKgf~~~~~~g~dv~~~L~~al~r~--~l~v~v~aivNDtvatlla~~y 240 (289)
++.|.+..+-. -.+++ -+..+-+.|+++ ++| +.++|-.--|..+..+
T Consensus 57 vGlP~~~~G~~----~~~~~-----------~v~~f~~~L~~~~~~ip---V~~~DEr~TT~~A~~~ 105 (135)
T PF03652_consen 57 VGLPLNMDGSE----SEQAR-----------RVRKFAEELKKRFPGIP---VILVDERLTTKEAERR 105 (135)
T ss_dssp EEEEBBCTSSC-----CCHH-----------HHHHHHHHHHHHH-TSE---EEEEECSCSHHCCHCC
T ss_pred EeCCcccCCCc----cHHHH-----------HHHHHHHHHHHhcCCCc---EEEECCChhHHHHHHH
Confidence 78888774422 23332 233344444443 777 6777766555544433
No 82
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=60.15 E-value=56 Score=30.86 Aligned_cols=18 Identities=17% Similarity=0.320 Sum_probs=17.0
Q ss_pred cEEEEeeCCceEEEEEEE
Q 022975 96 LFYALDLGGTNFRVLRVQ 113 (289)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~ 113 (289)
.|++||+|-|+.|+.+++
T Consensus 33 ~~~GIDiGStt~K~Vlld 50 (293)
T TIGR03192 33 ITCGIDVGSVSSQAVLVC 50 (293)
T ss_pred EEEEEEeCchhEEEEEEe
Confidence 689999999999999997
No 83
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=59.96 E-value=1.6e+02 Score=27.83 Aligned_cols=50 Identities=20% Similarity=0.314 Sum_probs=31.6
Q ss_pred HHHHHHHHHcCCCceEEEEEechHHHhhcccccC--CCcEEEEEEccCc-cceee
Q 022975 209 GELTKAMERIGLDMRVAALVNDTIGTLAGGRYHN--KDAIAAVILGTGT-NAAYV 260 (289)
Q Consensus 209 ~~L~~al~r~~l~v~v~aivNDtvatlla~~y~~--~~~~iglIlGTG~-Na~yi 260 (289)
+.+.++++..|++ ++.++|+.++++++..... +...+-+=+|-|+ +.+.+
T Consensus 115 ~~l~~a~~~ag~~--~~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG~gtt~v~vi 167 (335)
T PRK13929 115 RAISDAVKNCGAK--NVHLIEEPVAAAIGADLPVDEPVANVVVDIGGGTTEVAII 167 (335)
T ss_pred HHHHHHHHHcCCC--eeEeecCHHHHHHhcCCCcCCCceEEEEEeCCCeEEEEEE
Confidence 4455677666655 5899999999999865432 2333444466666 55555
No 84
>PRK13317 pantothenate kinase; Provisional
Probab=58.18 E-value=9.1 Score=35.66 Aligned_cols=22 Identities=18% Similarity=0.298 Sum_probs=18.5
Q ss_pred ccEEEEeeCCceEEEEEEEeCC
Q 022975 95 GLFYALDLGGTNFRVLRVQLGG 116 (289)
Q Consensus 95 G~~LaiDlGGTnlRv~~V~l~g 116 (289)
+..++||+|||..|++.++-++
T Consensus 2 ~~~iGIDiGstt~K~v~~~~~~ 23 (277)
T PRK13317 2 EMKIGIDAGGTLTKIVYLEEKK 23 (277)
T ss_pred CceEEEEeCcccEEEEEEcCCC
Confidence 3579999999999999987644
No 85
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=57.87 E-value=55 Score=32.41 Aligned_cols=20 Identities=30% Similarity=0.318 Sum_probs=16.9
Q ss_pred EEEEeeCCceEEEEEEEeCC
Q 022975 97 FYALDLGGTNFRVLRVQLGG 116 (289)
Q Consensus 97 ~LaiDlGGTnlRv~~V~l~g 116 (289)
=+|+|+|-|+++..+++|..
T Consensus 3 GiAvDiGTTti~~~L~dl~~ 22 (412)
T PF14574_consen 3 GIAVDIGTTTIAAYLVDLET 22 (412)
T ss_dssp EEEEEE-SSEEEEEEEETTT
T ss_pred EEEEEcchhheeeEEEECCC
Confidence 37999999999999999953
No 86
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=57.38 E-value=1.2e+02 Score=31.31 Aligned_cols=52 Identities=19% Similarity=0.278 Sum_probs=35.1
Q ss_pred HHHHHHHHHHcCCCceEEEEEechHHHhhcccccC--CCcEEEEEEccCc-cceeee
Q 022975 208 VGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHN--KDAIAAVILGTGT-NAAYVE 261 (289)
Q Consensus 208 ~~~L~~al~r~~l~v~v~aivNDtvatlla~~y~~--~~~~iglIlGTG~-Na~yie 261 (289)
.+.+.+|....|+++ +.++|+.+|++++-.+.. +..++=+=||-|| -.+.++
T Consensus 136 R~at~~A~~iaGl~v--lrlinEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll~ 190 (579)
T COG0443 136 RQATKDAARIAGLNV--LRLINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLLE 190 (579)
T ss_pred HHHHHHHHHHcCCCe--EEEecchHHHHHHhHhccCCCcEEEEEEcCCCCEEEEEEE
Confidence 445567776678774 799999999999877744 3344444478888 444443
No 87
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=57.31 E-value=53 Score=33.86 Aligned_cols=49 Identities=22% Similarity=0.294 Sum_probs=29.2
Q ss_pred HHHHHHHcCCCceEEEEEechHHHhhcccccC--CCcEEEEEEccCc-cceeee
Q 022975 211 LTKAMERIGLDMRVAALVNDTIGTLAGGRYHN--KDAIAAVILGTGT-NAAYVE 261 (289)
Q Consensus 211 L~~al~r~~l~v~v~aivNDtvatlla~~y~~--~~~~iglIlGTG~-Na~yie 261 (289)
+.+|.+..|++ +..++|+.+|+.++-.+.. +..++=+=+|-|| ..+.++
T Consensus 148 ~~~Aa~~AGl~--v~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~~ 199 (599)
T TIGR01991 148 TKDAARLAGLN--VLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILK 199 (599)
T ss_pred HHHHHHHcCCC--ceEEecCHHHHHHHHhhccCCCCEEEEEEcCCCeEEEEEEE
Confidence 33444444554 5789999999988755532 3334444467776 555554
No 88
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=57.10 E-value=25 Score=24.80 Aligned_cols=35 Identities=6% Similarity=0.072 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 022975 34 WARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHA 68 (289)
Q Consensus 34 ~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~ 68 (289)
.+.++++++.+.+.|..+.++++.=...|.++|.+
T Consensus 29 ~~t~~ei~~~l~~~y~~~~~~~~~dv~~fl~~L~~ 63 (68)
T PF05402_consen 29 PRTVEEIVDALAEEYDVDPEEAEEDVEEFLEQLRE 63 (68)
T ss_dssp SS-HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999876
No 89
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=57.08 E-value=37 Score=29.28 Aligned_cols=49 Identities=20% Similarity=0.300 Sum_probs=31.8
Q ss_pred EEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCCcccCCchhHHHHHHHHHHHHHHhc
Q 022975 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATE 158 (289)
Q Consensus 98 LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~I~~fl~~~ 158 (289)
++||.|||+-=+.+++-+++ ++. ..+.|+. .+++..=|.+.+...++..
T Consensus 2 igIDvGGT~TD~v~~d~~~~---~~~----~~K~~Tt-----~~d~~~gi~~al~~l~~~~ 50 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDEDTG---VVA----TAKVPTT-----PDDPAEGILEALDALLEES 50 (176)
T ss_pred eeEecCCCcEEEEEEeCCCC---EEE----EEEeCCC-----CcCHHHHHHHHHHhhhccc
Confidence 79999999999999877642 232 4455654 2455555666666655543
No 90
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=54.40 E-value=59 Score=27.26 Aligned_cols=60 Identities=15% Similarity=0.231 Sum_probs=30.9
Q ss_pred EEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCCcccCCchhHHHHHHHHHHHHHHhcCCC
Q 022975 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEG 161 (289)
Q Consensus 97 ~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~ 161 (289)
+||||-|-++.-.++++..++.-..+ .+-..+.+.. .+..+=...|.+.+.++++++.++
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i--~~G~I~t~~~---~~~~~Rl~~I~~~l~~li~~~~P~ 60 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLI--DYGTIKTSSK---DSLPERLKEIYEELEELIEEYNPD 60 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEE--EEEEEE---S-----HHHHHHHHHHHHHHHHHHH--S
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEE--EeCeEECCCC---CCHHHHHHHHHHHHHHHHHhhCCC
Confidence 58999999999999999966532222 2222333322 122334445556666666666543
No 91
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=54.35 E-value=43 Score=28.20 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=17.1
Q ss_pred ccEEEEeeCCceEEEEEEEeCC
Q 022975 95 GLFYALDLGGTNFRVLRVQLGG 116 (289)
Q Consensus 95 G~~LaiDlGGTnlRv~~V~l~g 116 (289)
+.+||+|+|--.+=+++-+..+
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~~ 23 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDILG 23 (141)
T ss_pred ceEEEEecCCceEEEEEecCCC
Confidence 4689999998888777765544
No 92
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=53.37 E-value=60 Score=30.21 Aligned_cols=62 Identities=24% Similarity=0.248 Sum_probs=40.1
Q ss_pred EEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCCccc-C-CchhHHHHHHHHHHHHHHhc
Q 022975 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMT-G-SSHELFDYIAAALAKFVATE 158 (289)
Q Consensus 97 ~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~-~-~~~~lfd~Ia~~I~~fl~~~ 158 (289)
|=+||+|-.++|+.++++.+..-..+........+.+.+.. + -.++-.+.+.+++..|.+..
T Consensus 2 ~AvIDiGSNsirl~I~~~~~~~~~~l~~~~~~vrL~~~~~~~g~i~~e~i~~~~~~l~~f~~~~ 65 (300)
T TIGR03706 2 IAAIDIGSNSVRLVIARGVEGSLQVLFNEKEMVRLGEGLDSTGRLSEEAIERALEALKRFAELL 65 (300)
T ss_pred eEEEEecCCeeeEEEEEecCCcEEEhhheeeeeecCCCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999864322333333334555555421 1 13467788888888887643
No 93
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=52.36 E-value=52 Score=31.73 Aligned_cols=126 Identities=16% Similarity=0.262 Sum_probs=78.1
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCCcccCCchhHHHHHHHHHHHHHHhcCCCCCC-----CC----
Q 022975 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHV-----SP---- 166 (289)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~-----~~---- 166 (289)
..+|||+|-+.+++.-++-.|+. +.. .++...++|..++....-.=.+-+++.|+..+.+++...+. +.
T Consensus 11 ~~vGIdI~~~sVKvvqLs~~g~~-~kL-e~y~~~~lp~~iv~dg~ivd~~av~~~Lk~ala~~gi~~k~aa~AVP~s~ai 88 (354)
T COG4972 11 AAVGIDIGSHSVKVVQLSRSGNR-YKL-EKYASEPLPENIVADGKIVDYDAVASALKRALAKLGIKSKNAATAVPGSAAI 88 (354)
T ss_pred ceeeEeeccceEEEEEEcccCCc-eee-eeeeecccCccccccCCcccHHHHHHHHHHHHHhcCcchhhhhhhcCcccee
Confidence 47999999999999877644443 222 24456789988875444445678899999999888765430 00
Q ss_pred CC-----------------eeeeeeeeeeeeeeccCCceEEEecccc---eeccC-CCCCcHHHHHHHHHHHcCCCce
Q 022975 167 GR-----------------QRELGFTFSFPVRQTSIASGDLIKWTKG---FSIED-TVGEDVVGELTKAMERIGLDMR 223 (289)
Q Consensus 167 ~~-----------------~~~lG~tfSfP~~q~~~~~~~Li~wtKg---f~~~~-~~g~dv~~~L~~al~r~~l~v~ 223 (289)
.+ ....+-.+|||++..+++=-.|-....+ ..+-= ..-+++++...++|+..|+...
T Consensus 89 tk~i~vp~~lde~eL~~~V~~ea~~y~PyP~EEv~lDy~vlg~~~~~~e~v~Vll~AtrkE~v~~ri~a~~~AGl~~~ 166 (354)
T COG4972 89 TKTIPVPDELDEKELEDQVESEASRYIPYPLEEVNLDYQVLGPSANEPEKVQVLLVATRKEVVESRIDAFELAGLEPK 166 (354)
T ss_pred eEEeccCCcccHHHHHHHHHHHHhhcCCCchhhcccceEEeccccCCCccEEEEEEEeehhhhHHHHHHHHHcCCCce
Confidence 00 1234567899998777542222111110 00000 1237899999999999998643
No 94
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=52.06 E-value=19 Score=35.66 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.1
Q ss_pred ccEEEEeeCCceEEEEEEEeCC
Q 022975 95 GLFYALDLGGTNFRVLRVQLGG 116 (289)
Q Consensus 95 G~~LaiDlGGTnlRv~~V~l~g 116 (289)
.+|++||+|+|+.++.+++.++
T Consensus 2 ~y~lGIDIGSTsTKaVVmd~~g 23 (432)
T TIGR02259 2 ECFVGIDLGSTTTKAVLMDDKG 23 (432)
T ss_pred ceEEEEEcCchhEEEEEEcCCC
Confidence 3689999999999999998654
No 95
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=51.24 E-value=1e+02 Score=28.68 Aligned_cols=22 Identities=14% Similarity=0.404 Sum_probs=18.7
Q ss_pred cEEEEeeCCceEEEEEEEeCCC
Q 022975 96 LFYALDLGGTNFRVLRVQLGGR 117 (289)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~ 117 (289)
.|++||+|-|+.++.+++.+++
T Consensus 2 ~~~GIDiGStttK~Vlid~~~~ 23 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFEVDGD 23 (262)
T ss_pred eEEEEEcCcccEEEEEEecCCC
Confidence 3799999999999999986543
No 96
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=50.94 E-value=2.5e+02 Score=27.46 Aligned_cols=55 Identities=24% Similarity=0.310 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHcCCCceEEEEEechHHHhhcccccC--CCcEEEEEEccCc-cceeeecc
Q 022975 207 VVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHN--KDAIAAVILGTGT-NAAYVERA 263 (289)
Q Consensus 207 v~~~L~~al~r~~l~v~v~aivNDtvatlla~~y~~--~~~~iglIlGTG~-Na~yie~~ 263 (289)
..+-+.+++++.|++ +..++++..|...+..+.+ +...+-+=+|-|+ +.+.+.++
T Consensus 167 ~~~~~~~a~~~aGl~--v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G 224 (420)
T PRK09472 167 MAKNIVKAVERCGLK--VDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGG 224 (420)
T ss_pred HHHHHHHHHHHcCCe--EeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECC
Confidence 344456677766765 4788889988888765543 2446666788888 67677654
No 97
>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]
Probab=50.45 E-value=15 Score=34.70 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=20.9
Q ss_pred cccEEEEeeCCceEEEEEEEeCCC
Q 022975 94 KGLFYALDLGGTNFRVLRVQLGGR 117 (289)
Q Consensus 94 ~G~~LaiDlGGTnlRv~~V~l~g~ 117 (289)
...|+++|=|.||||+-+++-+|.
T Consensus 4 ~~~~i~iDWGTT~~R~wL~~~dg~ 27 (306)
T COG3734 4 EPAYIAIDWGTTNLRAWLVRGDGA 27 (306)
T ss_pred CceEEEEecCCccEEEEEEcCCcc
Confidence 467999999999999999977764
No 98
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=46.93 E-value=17 Score=34.71 Aligned_cols=20 Identities=30% Similarity=0.659 Sum_probs=17.1
Q ss_pred EEEeeCCceEEEEEEEeCCC
Q 022975 98 YALDLGGTNFRVLRVQLGGR 117 (289)
Q Consensus 98 LaiDlGGTnlRv~~V~l~g~ 117 (289)
|++|+||-|+|+++++-+|.
T Consensus 1 ~G~DiGGA~~K~a~~~~~g~ 20 (318)
T TIGR03123 1 LGIDIGGANTKAAELDEDGR 20 (318)
T ss_pred CccccccceeeeEEecCCCc
Confidence 58999999999999876664
No 99
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=46.34 E-value=54 Score=28.75 Aligned_cols=19 Identities=16% Similarity=0.253 Sum_probs=15.7
Q ss_pred EEEEeeCCceEEEEEEEeC
Q 022975 97 FYALDLGGTNFRVLRVQLG 115 (289)
Q Consensus 97 ~LaiDlGGTnlRv~~V~l~ 115 (289)
+|.||+|-|++++++++-+
T Consensus 1 ~L~iDiGNT~ik~~~~~~~ 19 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDGD 19 (206)
T ss_dssp EEEEEE-SSEEEEEEEETT
T ss_pred CEEEEECCCeEEEEEEECC
Confidence 6899999999999999653
No 100
>PRK10854 exopolyphosphatase; Provisional
Probab=46.30 E-value=93 Score=31.43 Aligned_cols=62 Identities=19% Similarity=0.277 Sum_probs=42.2
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCCcccCC--chhHHHHHHHHHHHHHHh
Q 022975 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGS--SHELFDYIAAALAKFVAT 157 (289)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~~~--~~~lfd~Ia~~I~~fl~~ 157 (289)
.|-+||+|-.++|..+++..+..-+++....+...+.+.+.... .++-.+...+++..|.+.
T Consensus 12 ~~A~IDIGSNSirL~I~e~~~~~~~~i~~~k~~vrLg~g~~~~g~Ls~e~~~r~~~~L~~F~~~ 75 (513)
T PRK10854 12 EFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLDSDNMLSEEAMERGLNCLSLFAER 75 (513)
T ss_pred EEEEEEeccchheEEEEEecCCcEEEeeeeeEEEECCCCcCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 47899999999999999986533234433334455555443211 357889999999988664
No 101
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=44.21 E-value=59 Score=30.02 Aligned_cols=43 Identities=21% Similarity=0.292 Sum_probs=28.7
Q ss_pred EEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCCcccCCchhHHHHHH
Q 022975 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIA 148 (289)
Q Consensus 97 ~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia 148 (289)
+|.||+|-||+.+++.+ ++. .. ..|+++++.. .+.+|+..++.
T Consensus 2 ~L~iDiGNT~~~~a~~~-~~~---~~----~~~r~~t~~~-~~~del~~~~~ 44 (251)
T COG1521 2 LLLIDIGNTRIVFALYE-GGK---VV----QTWRLATEDL-LTEDELGLQLH 44 (251)
T ss_pred eEEEEeCCCeEEEEEec-CCe---EE----EEEeeccccc-ccHHHHHHHHH
Confidence 68999999999999997 222 33 3677776654 33455554443
No 102
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=42.59 E-value=20 Score=36.32 Aligned_cols=53 Identities=26% Similarity=0.336 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHcCCCceEEEEEechHHHhhcccccCC---CcEEEEEEccCc-cceeee
Q 022975 207 VVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNK---DAIAAVILGTGT-NAAYVE 261 (289)
Q Consensus 207 v~~~L~~al~r~~l~v~v~aivNDtvatlla~~y~~~---~~~iglIlGTG~-Na~yie 261 (289)
=.+.+.+|.+..|++ ++.++|+.+|+.++..+... +.++=+=+|-|+ .++.++
T Consensus 150 qr~~~~~Aa~~agl~--~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~ 206 (602)
T PF00012_consen 150 QRQALRDAAELAGLN--VLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVE 206 (602)
T ss_dssp HHHHHHHHHHHTT-E--EEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEE
T ss_pred hhhcccccccccccc--cceeecccccccccccccccccccceeccccccceEeeeehh
Confidence 455666777767775 57899999999886544322 344444467766 555554
No 103
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=39.23 E-value=22 Score=33.86 Aligned_cols=21 Identities=14% Similarity=0.221 Sum_probs=18.4
Q ss_pred ccccEEEEeeCCceEEEEEEE
Q 022975 93 EKGLFYALDLGGTNFRVLRVQ 113 (289)
Q Consensus 93 E~G~~LaiDlGGTnlRv~~V~ 113 (289)
..+..|.+|+|||+..++++.
T Consensus 126 ~~~~~I~~DmGGTTtDi~~i~ 146 (318)
T TIGR03123 126 RIPECLFVDMGSTTTDIIPII 146 (318)
T ss_pred cCCCEEEEEcCccceeeEEec
Confidence 366799999999999999984
No 104
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=39.20 E-value=1.7e+02 Score=24.98 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=19.3
Q ss_pred cEEEEeeCCceEEEEEEEeCCC
Q 022975 96 LFYALDLGGTNFRVLRVQLGGR 117 (289)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~ 117 (289)
++||||-|-++.=+++++.+++
T Consensus 3 ~iLGIDPgl~~tG~avi~~~~~ 24 (164)
T PRK00039 3 RILGIDPGLRRTGYGVIEVEGR 24 (164)
T ss_pred EEEEEccccCceeEEEEEecCC
Confidence 4899999999999999988765
No 105
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=39.01 E-value=1.5e+02 Score=29.81 Aligned_cols=63 Identities=22% Similarity=0.264 Sum_probs=41.9
Q ss_pred ccEEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCCccc-C-CchhHHHHHHHHHHHHHHh
Q 022975 95 GLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMT-G-SSHELFDYIAAALAKFVAT 157 (289)
Q Consensus 95 G~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~-~-~~~~lfd~Ia~~I~~fl~~ 157 (289)
..|=+||+|-.++|..+++..+..-+++........+.+.+.. + =.++-.+...++++.|.+.
T Consensus 6 ~~~A~IDIGSNSirL~I~~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~F~~~ 70 (496)
T PRK11031 6 SLYAAIDLGSNSFHMLVVREVAGSIQTLARIKRKVRLAAGLDSDNALSNEAMERGWQCLRLFAER 70 (496)
T ss_pred CEEEEEEccccceeEEEEEecCCceEEeecceeEEEccCCcCcCCCcCHHHHHHHHHHHHHHHHH
Confidence 3577999999999999999855322333333344555544321 1 1357889999999999764
No 106
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=38.00 E-value=1.4e+02 Score=29.47 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=20.7
Q ss_pred cccccEEEEeeCCceEEEEEEEeCC
Q 022975 92 DEKGLFYALDLGGTNFRVLRVQLGG 116 (289)
Q Consensus 92 ~E~G~~LaiDlGGTnlRv~~V~l~g 116 (289)
...+.+|+||.|-|+.++.+++-++
T Consensus 132 ~~~~~~LGID~GSTtTK~VLm~d~~ 156 (396)
T COG1924 132 YQGMYTLGIDSGSTTTKAVLMEDGK 156 (396)
T ss_pred hcCcEEEEEecCCcceeEEEEeCCC
Confidence 3456899999999999999986644
No 107
>PRK10753 transcriptional regulator HU subunit alpha; Provisional
Probab=37.97 E-value=84 Score=23.98 Aligned_cols=36 Identities=6% Similarity=0.162 Sum_probs=31.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccC
Q 022975 38 VAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE 73 (289)
Q Consensus 38 ~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~ 73 (289)
.++++.+.+...++..+...+.+.|.+.|.+.|...
T Consensus 4 ~eli~~ia~~~~~s~~~~~~~v~~~~~~i~~~L~~g 39 (90)
T PRK10753 4 TQLIDVIADKAELSKTQAKAALESTLAAITESLKEG 39 (90)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 356777777788999999999999999999999764
No 108
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=36.65 E-value=1.2e+02 Score=27.55 Aligned_cols=28 Identities=25% Similarity=0.484 Sum_probs=23.2
Q ss_pred CCcccccEEEEeeCCceEEEEEEEeCCC
Q 022975 90 TGDEKGLFYALDLGGTNFRVLRVQLGGR 117 (289)
Q Consensus 90 ~G~E~G~~LaiDlGGTnlRv~~V~l~g~ 117 (289)
+-+++..++++|||-.++-..+++-+|.
T Consensus 24 ~ad~sk~~vGVDLGT~~iV~~vlD~d~~ 51 (277)
T COG4820 24 AADESKLWVGVDLGTCDIVSMVLDRDGQ 51 (277)
T ss_pred ccccCceEEEeecccceEEEEEEcCCCC
Confidence 4567788999999999999988877664
No 109
>PRK00285 ihfA integration host factor subunit alpha; Reviewed
Probab=36.29 E-value=89 Score=24.03 Aligned_cols=37 Identities=14% Similarity=0.243 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccC
Q 022975 37 AVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE 73 (289)
Q Consensus 37 ~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~ 73 (289)
..++++.+.+...++..+...+.+.|.++|.+.|...
T Consensus 5 k~el~~~ia~~~~~s~~~v~~vl~~~~~~i~~~L~~g 41 (99)
T PRK00285 5 KADLAEALFEKVGLSKREAKELVELFFEEIRDALENG 41 (99)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHcC
Confidence 3567788888888999999999999999999999764
No 110
>TIGR00987 himA integration host factor, alpha subunit. This protein forms a site-specific DNA-binding heterodimer with the integration host factor beta subunit. It is closely related to the DNA-binding protein HU.
Probab=36.12 E-value=91 Score=23.91 Aligned_cols=36 Identities=8% Similarity=0.177 Sum_probs=31.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccC
Q 022975 38 VAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE 73 (289)
Q Consensus 38 ~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~ 73 (289)
.++++.+.+...++..+...+.+.|.++|...|...
T Consensus 5 ~eli~~ia~~~~~s~~~v~~vv~~~~~~i~~~L~~g 40 (96)
T TIGR00987 5 AEMSEYLFDELGLSKREAKELVELFFEEIRRALENG 40 (96)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHcC
Confidence 466777778888999999999999999999999764
No 111
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=35.09 E-value=38 Score=31.52 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=16.0
Q ss_pred cEEEEeeCCceEEEEEEEeCCC
Q 022975 96 LFYALDLGGTNFRVLRVQLGGR 117 (289)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~ 117 (289)
..|.+|+|||+.-++++. +|.
T Consensus 78 ~~i~vDmGGTTtDi~~i~-~G~ 98 (290)
T PF01968_consen 78 NAIVVDMGGTTTDIALIK-DGR 98 (290)
T ss_dssp SEEEEEE-SS-EEEEEEE-TTE
T ss_pred CEEEEeCCCCEEEEEEEE-CCe
Confidence 589999999999999995 453
No 112
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=35.04 E-value=41 Score=34.25 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=29.2
Q ss_pred EEechHHHhhcccccCCCcEEEEEEccCccceeeecccc
Q 022975 227 LVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHA 265 (289)
Q Consensus 227 ivNDtvatlla~~y~~~~~~iglIlGTG~Na~yie~~~~ 265 (289)
+=-|++|..+...+.+ ...+.++..-|||+=.......
T Consensus 311 VGADAla~il~tg~~~-sdevslvtD~GTNaEivlg~~~ 348 (614)
T COG3894 311 VGADALAMILSTGIHD-SDEVSLVTDYGTNAEIVLGNRD 348 (614)
T ss_pred cchHHHHHHHhccCcc-ccceEEEEeecccceEEeccCC
Confidence 4458888888887765 4568999999999988876543
No 113
>PF00216 Bac_DNA_binding: Bacterial DNA-binding protein; InterPro: IPR000119 Bacteria synthesise a set of small, usually basic proteins of about 90 residues that bind DNA and are known as histone-like proteins [, ]. Examples include the HU protein in Escherichia coli is a dimer of closely related alpha and beta chains and in other bacteria can be a dimer of identical chains. HU-type proteins have been found in a variety of eubacteria, cyanobacteria and archaebacteria, and are also encoded in the chloroplast genome of some algae []. The integration host factor (IHF), a dimer of closely related chains which seem to function in genetic recombination as well as in translational and transcriptional control [] is found in enterobacteria and viral proteins include the African Swine fever virus protein A104R (or LMW5-AR) []. The exact function of these proteins is not yet clear but they are capable of wrapping DNA and stabilising it from denaturation under extreme environmental conditions. The structure is known for one of these proteins []. The protein exists as a dimer and two "beta-arms" function as the non-specific binding site for bacterial DNA. ; GO: 0003677 DNA binding; PDB: 3C4I_B 2O97_A 1MUL_A 1P78_A 1P51_C 1P71_B 2HT0_A 1OWG_A 2IIF_A 1OUZ_A ....
Probab=34.13 E-value=98 Score=22.93 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=31.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccC
Q 022975 38 VAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE 73 (289)
Q Consensus 38 ~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~ 73 (289)
.++++.+.+...++..+...+.+.|.+.|.+.|...
T Consensus 4 ~eli~~ia~~~~~s~~~v~~vl~~~~~~i~~~L~~g 39 (90)
T PF00216_consen 4 KELIKRIAEKTGLSKKDVEAVLDALFDVIKEALKEG 39 (90)
T ss_dssp HHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 467777888888999999999999999999999653
No 114
>PRK03661 hypothetical protein; Validated
Probab=34.01 E-value=1.6e+02 Score=25.23 Aligned_cols=56 Identities=23% Similarity=0.387 Sum_probs=36.0
Q ss_pred HcCCCHHHHHH---HHHHHHHHHHHhhccCCCCcceeeecccccCCCC----cccc-cEEEEeeC
Q 022975 47 KCGTPIGKLRQ---VADAMTVEMHAGLASEGGSKLKMLISYVDNLPTG----DEKG-LFYALDLG 103 (289)
Q Consensus 47 ~~~~~~~~L~~---i~~~f~~em~~gL~~~~~s~~~Mlps~v~~lP~G----~E~G-~~LaiDlG 103 (289)
.+.+|.+.|++ ++..-..+|-.|....-.+++..--|-+.. |+| ++-| .|+||...
T Consensus 64 lLgV~~~~i~~~gavS~e~a~~MA~g~~~~~~ad~~ia~TG~AG-P~g~~~~kpvGtv~i~i~~~ 127 (164)
T PRK03661 64 MIGVREETLAQHGAVSEPVVVEMAIGALKAARADYAVSISGIAG-PDGGSEEKPVGTVWFGFASA 127 (164)
T ss_pred HcCCCHHHHHhcCCCCHHHHHHHHHHHHHHcCCCEEEEecccCC-CCCCCCCCCceEEEEEEEeC
Confidence 34577777766 677777777777754444666666676654 654 3455 47787653
No 115
>smart00411 BHL bacterial (prokaryotic) histone like domain.
Probab=33.84 E-value=1.1e+02 Score=22.75 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=31.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccC
Q 022975 38 VAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE 73 (289)
Q Consensus 38 ~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~ 73 (289)
.++++++.+...++..+...+.+.|.++|.+.|...
T Consensus 4 ~eli~~ia~~~~~~~~~v~~vl~~l~~~i~~~L~~g 39 (90)
T smart00411 4 SELIDAIAEKAGLSKKDAKAAVDAFLEIITEALKKG 39 (90)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 467778888888999999999999999999999763
No 116
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=33.78 E-value=1.4e+02 Score=24.43 Aligned_cols=16 Identities=25% Similarity=0.383 Sum_probs=11.3
Q ss_pred EEEeeCCceEEEEEEE
Q 022975 98 YALDLGGTNFRVLRVQ 113 (289)
Q Consensus 98 LaiDlGGTnlRv~~V~ 113 (289)
||||+|-..+=+++-+
T Consensus 1 laiD~G~kriGvA~~d 16 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQD 16 (130)
T ss_pred CeEccCCCeEEEEEEC
Confidence 6899998765555443
No 117
>PRK13331 pantothenate kinase; Reviewed
Probab=33.45 E-value=46 Score=30.65 Aligned_cols=21 Identities=14% Similarity=0.165 Sum_probs=18.7
Q ss_pred ccccEEEEeeCCceEEEEEEE
Q 022975 93 EKGLFYALDLGGTNFRVLRVQ 113 (289)
Q Consensus 93 E~G~~LaiDlGGTnlRv~~V~ 113 (289)
++-.+|+||+|-||.++++.+
T Consensus 5 ~~~~~L~iDiGNT~~~~g~f~ 25 (251)
T PRK13331 5 TSNEWLALMIGNSRLHWGYFS 25 (251)
T ss_pred CCCcEEEEEeCCCcEEEEEEE
Confidence 455699999999999999997
No 118
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=32.97 E-value=36 Score=35.86 Aligned_cols=60 Identities=22% Similarity=0.287 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHhhccCCC-Ccceeeec--------ccccCCC------------------CcccccEEEEeeCCce
Q 022975 54 KLRQVADAMTVEMHAGLASEGG-SKLKMLIS--------YVDNLPT------------------GDEKGLFYALDLGGTN 106 (289)
Q Consensus 54 ~L~~i~~~f~~em~~gL~~~~~-s~~~Mlps--------~v~~lP~------------------G~E~G~~LaiDlGGTn 106 (289)
.|..+.++|.+.+++.|...+- ..+.|+-| +....|. |...|..+++|+|||+
T Consensus 210 ~L~pi~~~yl~~v~~~l~~~g~~~~l~~m~sdGgl~~~~~a~~~pv~tI~SGPAagvvGAa~ltg~~~g~~i~~DmGGTS 289 (674)
T COG0145 210 YLSPILRRYLEAVKDALKERGIKARLMVMQSDGGLVSAEEAREKPVETILSGPAAGVVGAAYLTGLKAGNAIVFDMGGTS 289 (674)
T ss_pred eehHHHHHHHHHHHHHHHhcCCCceeEEEecCCccccHHHHhcCCeeeEeeccHHHHHHHHHhcccccCCEEEEEcCCcc
Confidence 4677788888888876654321 12222222 1112233 4455569999999999
Q ss_pred EEEEEEE
Q 022975 107 FRVLRVQ 113 (289)
Q Consensus 107 lRv~~V~ 113 (289)
..++++.
T Consensus 290 tDva~i~ 296 (674)
T COG0145 290 TDVALII 296 (674)
T ss_pred eeeeeee
Confidence 9999886
No 119
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=32.95 E-value=38 Score=34.65 Aligned_cols=52 Identities=21% Similarity=0.284 Sum_probs=30.7
Q ss_pred HHHHHHHHHHcCCCceEEEEEechHHHhhcccccC---CCcEEEEEEccCc-cceeee
Q 022975 208 VGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHN---KDAIAAVILGTGT-NAAYVE 261 (289)
Q Consensus 208 ~~~L~~al~r~~l~v~v~aivNDtvatlla~~y~~---~~~~iglIlGTG~-Na~yie 261 (289)
.+.+.+|.+..|++ ++.++|+.+|+.++-.+.. +..++=+=+|-|| .++.++
T Consensus 146 R~a~~~Aa~~AGl~--v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~ 201 (595)
T TIGR02350 146 RQATKDAGKIAGLE--VLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILE 201 (595)
T ss_pred HHHHHHHHHHcCCc--eEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEE
Confidence 34444555445665 5899999999998755432 3333333466666 444443
No 120
>COG1546 CinA Uncharacterized protein (competence- and mitomycin-induced) [General function prediction only]
Probab=32.79 E-value=2.4e+02 Score=24.39 Aligned_cols=68 Identities=26% Similarity=0.539 Sum_probs=45.2
Q ss_pred cCCCHHHHH---HHHHHHHHHHHHhhccCCCCcceeeecccccCCCCc----ccc-cEEEEeeCCceEEEEEEEeCCC
Q 022975 48 CGTPIGKLR---QVADAMTVEMHAGLASEGGSKLKMLISYVDNLPTGD----EKG-LFYALDLGGTNFRVLRVQLGGR 117 (289)
Q Consensus 48 ~~~~~~~L~---~i~~~f~~em~~gL~~~~~s~~~Mlps~v~~lP~G~----E~G-~~LaiDlGGTnlRv~~V~l~g~ 117 (289)
+.++.+.|. .++..-.+||-+|.....++++..--|-+.. |+|. +-| .|+++..||+ .-.-.+.++|+
T Consensus 65 LgV~~~tL~~~GaVSe~~a~eMA~Ga~~~~~ad~aiaiTGiAG-P~Gg~~~kpvGtV~ig~~~~~~-~~~~~~~~~g~ 140 (162)
T COG1546 65 LGVSPETLEEHGAVSEEVAREMARGAKERAGADIAIAITGIAG-PDGGSEGKPVGTVYIGLAIGGE-AITIRVNFGGD 140 (162)
T ss_pred hCCCHHHHHHcCCcCHHHHHHHHHHHHHhcCCCEEEEEEEeeC-CCCCCCCCCceEEEEEEEcCCc-eEEEEEEcCCC
Confidence 457777664 4678888999999876655777777788865 8843 445 4888888443 33334445553
No 121
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=32.59 E-value=90 Score=25.15 Aligned_cols=45 Identities=16% Similarity=0.321 Sum_probs=30.4
Q ss_pred EEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCCcccCCchhHHHHHHHH
Q 022975 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAA 150 (289)
Q Consensus 97 ~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~ 150 (289)
|+|||+|-..+-+++++-.|. .. ....++.+. .+..++++|+...
T Consensus 1 ~vGiDv~k~~~~v~v~~~~~~---~~----~~~~~~~~~--~~~~~l~~~l~~~ 45 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDPNGE---KL----RRFKFENDP--AGLEKLLDWLASL 45 (144)
T ss_pred eEEEEcccCeEEEEEEcCCCc---EE----EEEEEeccc--cchhHHhhhhccc
Confidence 799999999999999877663 22 234455433 2346788887663
No 122
>PRK10664 transcriptional regulator HU subunit beta; Provisional
Probab=31.65 E-value=1.3e+02 Score=23.07 Aligned_cols=36 Identities=8% Similarity=0.180 Sum_probs=31.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCC
Q 022975 39 AILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEG 74 (289)
Q Consensus 39 ~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~ 74 (289)
++++.+.+...++..+...+.+.|.+.+.+.|..++
T Consensus 5 eli~~ia~~~~~s~~~~~~~v~~~~~~i~~~L~~~~ 40 (90)
T PRK10664 5 QLIDKIAAGADISKAAAGRALDAIIASVTESLKEGD 40 (90)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 566777777889999999999999999999997653
No 123
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=30.93 E-value=3e+02 Score=23.16 Aligned_cols=32 Identities=13% Similarity=0.376 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHcC----C-CceEEEEEechHHHhhccc
Q 022975 207 VVGELTKAMERIG----L-DMRVAALVNDTIGTLAGGR 239 (289)
Q Consensus 207 v~~~L~~al~r~~----l-~v~v~aivNDtvatlla~~ 239 (289)
+.+.+++.+.+.. . ++. +.++||.+|-+++..
T Consensus 79 l~~~v~~~v~~~~~~~~~~~i~-V~~v~~~~A~lY~~S 115 (150)
T PF14639_consen 79 LYDDVRDIVEELDEDEQMPPIP-VVIVDDEVARLYSNS 115 (150)
T ss_dssp HHHHHHHHHHHTTB-TTS-B---EEE---TTHHHHHTS
T ss_pred HHHHHHHHHHHhhhcccCCCce-EEEECcHHHHHHhcC
Confidence 4455555554432 1 222 689999988877654
No 124
>TIGR00199 cinA_cterm competence/damage-inducible protein CinA C-terminal domain. CinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species. Several bacterial species have a protein consisting largely of the C-terminal domain of CinA but lacking the N-terminal domain.
Probab=30.50 E-value=2.6e+02 Score=23.43 Aligned_cols=55 Identities=22% Similarity=0.397 Sum_probs=34.7
Q ss_pred HcCCCHHHHHH---HHHHHHHHHHHhhccCCCCcceeeecccccCCCC----cccc-cEEEEee
Q 022975 47 KCGTPIGKLRQ---VADAMTVEMHAGLASEGGSKLKMLISYVDNLPTG----DEKG-LFYALDL 102 (289)
Q Consensus 47 ~~~~~~~~L~~---i~~~f~~em~~gL~~~~~s~~~Mlps~v~~lP~G----~E~G-~~LaiDl 102 (289)
.+.+|.+.+++ ++.....+|-+|.....++++.---|-+.. |+| ++-| .|+++-.
T Consensus 52 lLgV~~~~i~~~gavS~e~a~~MA~g~~~~~~adi~ia~TG~AG-P~~~~~~~pvGtv~ial~~ 114 (146)
T TIGR00199 52 LLGVSQETLARFGAVSEECAAEMALGVKERFGADVGIAISGIAG-PDGGEEEKPGGTVWFIWII 114 (146)
T ss_pred HhCCCHHHHHhcCCCCHHHHHHHHHHHHHHcCCCEEEEeeccCC-CCCCCCCCCCeEEEEEEEe
Confidence 34577777766 777788888888755444666666666654 654 3445 3666654
No 125
>COG4071 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.04 E-value=56 Score=29.68 Aligned_cols=55 Identities=35% Similarity=0.420 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHc-CCCceEEEEEechHHHh--hccccc-CCCcEEEEEEccCccceeeecc
Q 022975 207 VVGELTKAMERI-GLDMRVAALVNDTIGTL--AGGRYH-NKDAIAAVILGTGTNAAYVERA 263 (289)
Q Consensus 207 v~~~L~~al~r~-~l~v~v~aivNDtvatl--la~~y~-~~~~~iglIlGTG~Na~yie~~ 263 (289)
+.++|.+.++|+ |.+| +.++-||-+|+ ++..|. -+...=|++-|||+-+-..-+.
T Consensus 145 vA~el~~Ei~rr~GvDV--~v~v~DTDaTY~iLg~yFT~lp~a~pgI~sgtGv~Gfl~GRl 203 (278)
T COG4071 145 VAEELYKEIKRRLGVDV--VVMVADTDATYRILGFYFTALPYAIPGIISGTGVFGFLLGRL 203 (278)
T ss_pred HHHHHHHHHHHHhCCce--EEEEecCchHHHHHHHHHhhccccCCCeecccchHHHHHHHh
Confidence 677888777665 7665 55555555554 555443 3566669999999865444333
No 126
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=29.85 E-value=4.4e+02 Score=24.83 Aligned_cols=17 Identities=12% Similarity=0.067 Sum_probs=15.0
Q ss_pred EEEEeeCCceEEEEEEE
Q 022975 97 FYALDLGGTNFRVLRVQ 113 (289)
Q Consensus 97 ~LaiDlGGTnlRv~~V~ 113 (289)
.++||+|..++|++...
T Consensus 3 ~iviD~Gs~~~k~G~~~ 19 (373)
T smart00268 3 AIVIDNGSGTIKAGFAG 19 (373)
T ss_pred eEEEECCCCcEEEeeCC
Confidence 58999999999999863
No 127
>KOG3463 consensus Transcription initiation factor IIA, gamma subunit [Transcription]
Probab=29.66 E-value=1.6e+02 Score=23.76 Aligned_cols=45 Identities=11% Similarity=0.113 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCCCCcce
Q 022975 35 ARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLK 79 (289)
Q Consensus 35 ~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~~~ 79 (289)
..+++.|+++.+.=.+++..-..|-..|-..|.+.|+....++++
T Consensus 14 ~~L~~tLDe~v~~g~itp~la~~VL~~FDKSi~~al~~~vk~kms 58 (109)
T KOG3463|consen 14 NALQKTLDELVSDGVITPSLAKKVLEQFDKSINEALNDKVKNKMS 58 (109)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhccccee
Confidence 458999999999999999999999999999999999865544443
No 128
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=28.96 E-value=3.2e+02 Score=27.51 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=21.6
Q ss_pred ccccEEEEeeCCceEEEEEEEeCCC
Q 022975 93 EKGLFYALDLGGTNFRVLRVQLGGR 117 (289)
Q Consensus 93 E~G~~LaiDlGGTnlRv~~V~l~g~ 117 (289)
..+.++.+|+||+++-+.+++....
T Consensus 186 ~~~~vlv~D~Gggt~dvs~~~~~~~ 210 (602)
T PF00012_consen 186 KGKTVLVVDFGGGTFDVSVVEFSNG 210 (602)
T ss_dssp SEEEEEEEEEESSEEEEEEEEEETT
T ss_pred cccceeccccccceEeeeehhcccc
Confidence 4668999999999999999998643
No 129
>PF13941 MutL: MutL protein
Probab=28.23 E-value=2.1e+02 Score=28.72 Aligned_cols=55 Identities=18% Similarity=0.228 Sum_probs=36.7
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCCcccCCchhHHHHHHHHHHHHHHh
Q 022975 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVAT 157 (289)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~I~~fl~~ 157 (289)
.||.+|+|.|.-|+.+|++..+..+++. .-.-|+.+. + +++..-+-+++.+.-+.
T Consensus 1 ~~L~~DiGST~Tk~~l~d~~~~~~~~ig----~a~apTTv~--~-~Dv~~G~~~A~~~l~~~ 55 (457)
T PF13941_consen 1 DVLVVDIGSTYTKVTLFDLVDGEPRLIG----QAEAPTTVE--P-GDVTIGLNNALEQLEEQ 55 (457)
T ss_pred CEEEEEeCCcceEEeEEeccCCccEEEE----EEeCCCCcC--c-ccHHHHHHHHHHHHHHh
Confidence 3899999999999999996555444553 233566663 2 45666666666665443
No 130
>cd00591 HU_IHF Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and higher-order nucleoprotein complex assembly. The dimer subunits associate to form a compact globular core from which two beta ribbon arms (one from each subunit) protrude. The beta arms track and bind the DNA minor groove. Despite sequence and structural similarity, IHF and HU can be distinguished by their different DNA substrate preferences.
Probab=28.17 E-value=1.4e+02 Score=21.89 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=30.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcc
Q 022975 38 VAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLAS 72 (289)
Q Consensus 38 ~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~ 72 (289)
.++.+.+.+...++..+...+.+.|.+.|.+.|..
T Consensus 3 ~~l~~~ia~~~~~~~~~v~~vl~~~~~~i~~~L~~ 37 (87)
T cd00591 3 SELIEAIAEKTGLSKKDAEAAVDAFLDVITEALAK 37 (87)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHhC
Confidence 35677777888899999999999999999999975
No 131
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=27.88 E-value=60 Score=25.83 Aligned_cols=56 Identities=13% Similarity=0.171 Sum_probs=27.4
Q ss_pred EEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCCcccCCchhHH--HHHHHHHHHHHHh
Q 022975 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELF--DYIAAALAKFVAT 157 (289)
Q Consensus 97 ~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lf--d~Ia~~I~~fl~~ 157 (289)
+.+||+|+++.++.+.+.+..+ . +... -.-..|..= -....+- +.++..|+.-+++
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~-~-~~vl-~~g~~~s~g--i~~g~Itd~~~i~~~i~~a~~~ 58 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDG-Y-IRVL-GVGEVPSKG--IKGGHITDIEDISKAIKIAIEE 58 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEE-E-EEEE-S------------HHHHH--HHHHHHHT--HHH
T ss_pred CEEEEcCCCcEEEEEEEeCCCC-c-EEEE-EEecccccc--cCCCEEEEHHHHHHHHHHHHHH
Confidence 4789999999999998774321 1 1100 011122211 1345666 7777777665554
No 132
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=26.76 E-value=39 Score=28.66 Aligned_cols=66 Identities=15% Similarity=0.217 Sum_probs=40.6
Q ss_pred CCCCCcHHHHHHHHHHHcCCCce-EEEEEec------hHHHhhcccccCC-CcEEEEEEccCccceeeecccccCc
Q 022975 201 DTVGEDVVGELTKAMERIGLDMR-VAALVND------TIGTLAGGRYHNK-DAIAAVILGTGTNAAYVERAHAIPK 268 (289)
Q Consensus 201 ~~~g~dv~~~L~~al~r~~l~v~-v~aivND------tvatlla~~y~~~-~~~iglIlGTG~Na~yie~~~~i~k 268 (289)
|--|.++++.|.+.|+++|+.|. +-.--.| -.+..++....+. ...-=+|+|||...++.-+ ++|+
T Consensus 8 DhaG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGtGiG~siaAN--K~~G 81 (148)
T PRK05571 8 DHAGFELKEEIIEHLEELGHEVIDLGPDSYDASVDYPDYAKKVAEAVVAGEADRGILICGTGIGMSIAAN--KVKG 81 (148)
T ss_pred CCchHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHHHHHHHh--cCCC
Confidence 34578899999999999988643 2111112 2344444444333 4455578999999887743 3444
No 133
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=26.19 E-value=2.2e+02 Score=19.57 Aligned_cols=38 Identities=11% Similarity=0.064 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhc
Q 022975 34 WARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLA 71 (289)
Q Consensus 34 ~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~ 71 (289)
-..+.+.|+++.+.-.++++.-..|...|-.-|.+.|+
T Consensus 12 G~aL~dtLDeli~~~~I~p~La~kVL~~FDksi~~~L~ 49 (49)
T PF02268_consen 12 GIALTDTLDELIQEGKITPQLAMKVLEQFDKSINEALS 49 (49)
T ss_dssp HHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 34588999999999999999999999999998888763
No 134
>PF14142 YrzO: YrzO-like protein
Probab=26.14 E-value=48 Score=22.00 Aligned_cols=32 Identities=31% Similarity=0.424 Sum_probs=20.2
Q ss_pred hhhhhhhhheeehhcccccccHHHHHHHHHHHH
Q 022975 13 AAAVCAAAALVVRRRMKSTGRWARAVAILKEME 45 (289)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 45 (289)
+-++|-+||+-|..|..- .+.+++-++|+++.
T Consensus 11 ~gvacelaainrngrk~i-kqqaeliqllkel~ 42 (46)
T PF14142_consen 11 AGVACELAAINRNGRKKI-KQQAELIQLLKELK 42 (46)
T ss_pred HHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHHH
Confidence 467888888877776433 34455556666654
No 135
>PRK11678 putative chaperone; Provisional
Probab=25.89 E-value=75 Score=31.66 Aligned_cols=53 Identities=19% Similarity=0.349 Sum_probs=0.0
Q ss_pred EEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCCcccCCchhHHHHHHHHH
Q 022975 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAAL 151 (289)
Q Consensus 97 ~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~I 151 (289)
++|||||.||-=+++.+ .+...++........+|+-+.-...+.+-.+.+..+
T Consensus 2 ~iGID~GTtNs~va~~~--~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~ 54 (450)
T PRK11678 2 FIGFDYGTANCSVAVMR--DGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHL 54 (450)
T ss_pred eEEEecCccceeeEEee--CCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhc
No 136
>CHL00094 dnaK heat shock protein 70
Probab=25.20 E-value=3.3e+02 Score=28.18 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=20.4
Q ss_pred cccEEEEeeCCceEEEEEEEeCCC
Q 022975 94 KGLFYALDLGGTNFRVLRVQLGGR 117 (289)
Q Consensus 94 ~G~~LaiDlGGTnlRv~~V~l~g~ 117 (289)
...++.+||||.++-+.++++.+.
T Consensus 186 ~~~vlV~DlGgGT~DvSv~~~~~~ 209 (621)
T CHL00094 186 NETILVFDLGGGTFDVSILEVGDG 209 (621)
T ss_pred CCEEEEEEcCCCeEEEEEEEEcCC
Confidence 346899999999999999998653
No 137
>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]
Probab=24.93 E-value=1.3e+02 Score=28.12 Aligned_cols=141 Identities=14% Similarity=0.148 Sum_probs=71.8
Q ss_pred EEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCCcccCCchhHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeeeee
Q 022975 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTF 176 (289)
Q Consensus 97 ~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~tf 176 (289)
-+|||+|||=.||..-....+ + ..+.+-+. ..-++..+|++..|++-.+...... -.
T Consensus 20 ~vaiDiGGtLaKvv~sp~~sn--r------l~F~t~eT---~kId~~ve~l~~li~~h~k~C~~~~-------~l----- 76 (342)
T COG5146 20 KVAIDIGGTLAKVVQSPSQSN--R------LTFKTEET---KKIDQVVEWLNNLIQQHEKLCLTKI-------TL----- 76 (342)
T ss_pred EEEEecCceeeeeeeCccccc--c------eeeehHhh---hhHHHHHHHHHHHHHHHHhhhhhee-------eE-----
Confidence 589999999998865221111 1 12222222 2457889999887776543221100 00
Q ss_pred eeeeeeccCCceEE-EecccceeccCCCCCcHHHHHHHHHHH--cCCCceEEEEEechHHHhhc----ccccCCCcEEEE
Q 022975 177 SFPVRQTSIASGDL-IKWTKGFSIEDTVGEDVVGELTKAMER--IGLDMRVAALVNDTIGTLAG----GRYHNKDAIAAV 249 (289)
Q Consensus 177 SfP~~q~~~~~~~L-i~wtKgf~~~~~~g~dv~~~L~~al~r--~~l~v~v~aivNDtvatlla----~~y~~~~~~igl 249 (289)
--++=..-+. -++.|.|+++ +.-.+-.+.|..-|+- ..+|-+ +.+.||..+-.+. +.+.+--..+-+
T Consensus 77 ----iatGGga~kfyd~m~~~~~ik-v~r~~eme~li~gl~~fv~~IP~e-vFv~~d~~~e~~~~~~~~~~h~lypyilv 150 (342)
T COG5146 77 ----IATGGGAYKFYDRMSKQLDIK-VIRENEMEILINGLNYFVINIPAE-VFVEFDAASEGLGILLKEQGHDLYPYILV 150 (342)
T ss_pred ----EecCCcchhhHHHHhhhccce-eeecchHHHHHhcccceeeeccHH-HeeeeccccchhhhhhhhccccccceeeE
Confidence 0011000011 1455556555 4444444444443311 012212 5778887654443 344444567888
Q ss_pred EEccCccceeeeccccc
Q 022975 250 ILGTGTNAAYVERAHAI 266 (289)
Q Consensus 250 IlGTG~Na~yie~~~~i 266 (289)
-+|+|+-.-|+..-+..
T Consensus 151 NiGsGvSilkvtgpsqf 167 (342)
T COG5146 151 NIGSGVSILKVTGPSQF 167 (342)
T ss_pred eccCCeEEEEecCcchh
Confidence 89999887777654443
No 138
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=24.93 E-value=5.9e+02 Score=23.98 Aligned_cols=34 Identities=6% Similarity=0.151 Sum_probs=21.5
Q ss_pred CceEEEEEechHHHhhcccccCCCcEEEEEEccCcccee
Q 022975 221 DMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAY 259 (289)
Q Consensus 221 ~v~v~aivNDtvatlla~~y~~~~~~iglIlGTG~Na~y 259 (289)
.+.-+.++++.++++++... .+ |+|+.-|-..+.
T Consensus 123 ~~~~v~~~~~~~~a~~~~g~---~~--~lVVDiG~~~t~ 156 (371)
T cd00012 123 NVPALYVAIQAVLSLYASGR---TT--GLVVDSGDGVTH 156 (371)
T ss_pred CCCEEEEechHHHHHHhcCC---Ce--EEEEECCCCeeE
Confidence 44458999999988887543 23 556555544333
No 139
>PRK00199 ihfB integration host factor subunit beta; Reviewed
Probab=24.84 E-value=1.9e+02 Score=21.88 Aligned_cols=36 Identities=11% Similarity=0.197 Sum_probs=29.7
Q ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHhhccC
Q 022975 38 VAILKEMEEK-CGTPIGKLRQVADAMTVEMHAGLASE 73 (289)
Q Consensus 38 ~~~l~~~~~~-~~~~~~~L~~i~~~f~~em~~gL~~~ 73 (289)
.++++.+.+. ..++..+...+.+.|.++|.+.|...
T Consensus 4 ~eli~~ia~~~~~~s~~~~~~vv~~~~~~i~~~L~~g 40 (94)
T PRK00199 4 SELIERLAARNPHLSAKDVENAVKEILEEMSDALARG 40 (94)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 3566777654 46899999999999999999999764
No 140
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=23.89 E-value=64 Score=27.19 Aligned_cols=60 Identities=15% Similarity=0.185 Sum_probs=38.1
Q ss_pred CCCCCcHHHHHHHHHHHcCCCce-EEEEEech-----HHHhhccccc-CCCcEEEEEEccCccceeeec
Q 022975 201 DTVGEDVVGELTKAMERIGLDMR-VAALVNDT-----IGTLAGGRYH-NKDAIAAVILGTGTNAAYVER 262 (289)
Q Consensus 201 ~~~g~dv~~~L~~al~r~~l~v~-v~aivNDt-----vatlla~~y~-~~~~~iglIlGTG~Na~yie~ 262 (289)
|--|.++++.|.+.|+.+|+.|. +-. +|. .+..++.+.. ++...-=+|+|||.+.++.-+
T Consensus 8 DhaG~~lK~~l~~~L~~~G~eV~D~G~--~~~~dYpd~a~~va~~V~~~~~~~GIliCGTGiG~siaAN 74 (142)
T PRK08621 8 DKAGFELKEVVKDYLEDNKYEVVDVTE--EGAEDFVDSTLAVAKEVNKSEDNLGIVIDAYGAGSFMVAT 74 (142)
T ss_pred CcchHHHHHHHHHHHHHCCCEEEECCC--CCCCCcHHHHHHHHHHHHcCCCceEEEEcCCChhhhhhhh
Confidence 34578899999999999988653 211 222 2333444443 334455578999999888743
No 141
>PRK01742 tolB translocation protein TolB; Provisional
Probab=23.53 E-value=1.3e+02 Score=29.19 Aligned_cols=65 Identities=22% Similarity=0.222 Sum_probs=45.5
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHhhccCCCCcceeeecccccCCCCcccccEEEEeeCCceEEE
Q 022975 44 MEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRV 109 (289)
Q Consensus 44 ~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~~~Mlps~v~~lP~G~E~G~~LaiDlGGTnlRv 109 (289)
+.+.|..+.++++.++.+|..++.+.|.++.. -..=--.||..-+.+.+.......|.-|.|.|.
T Consensus 134 ~~~~~~~~~~~~r~~ah~~~d~i~~~ltg~~g-~f~~ria~v~~~~~~~~~~~i~i~d~dg~~~~~ 198 (429)
T PRK01742 134 AQNSYTVPAKWLRYGAHTVSDEVFEKLTAIRG-AFRTRIAYVVQKNGGSQPYEVRVADYDGFNQFI 198 (429)
T ss_pred eeeEEEcCHHHHHHHHHHHHHHHHHHHcCCCC-ccCCEEEEEEEEcCCCceEEEEEECCCCCCceE
Confidence 44567789999999999999999999987542 111112466554445445667777998888665
No 142
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=23.50 E-value=3.1e+02 Score=28.08 Aligned_cols=24 Identities=29% Similarity=0.551 Sum_probs=20.8
Q ss_pred cccEEEEeeCCceEEEEEEEeCCC
Q 022975 94 KGLFYALDLGGTNFRVLRVQLGGR 117 (289)
Q Consensus 94 ~G~~LaiDlGGTnlRv~~V~l~g~ 117 (289)
...++.+|+||.++-+.++++.+.
T Consensus 182 ~~~vlV~D~Gggt~dvsv~~~~~~ 205 (595)
T TIGR02350 182 DEKILVFDLGGGTFDVSILEIGDG 205 (595)
T ss_pred CcEEEEEECCCCeEEEEEEEecCC
Confidence 457999999999999999998653
No 143
>PRK13322 pantothenate kinase; Reviewed
Probab=23.45 E-value=73 Score=29.02 Aligned_cols=18 Identities=17% Similarity=0.296 Sum_probs=16.4
Q ss_pred EEEEeeCCceEEEEEEEe
Q 022975 97 FYALDLGGTNFRVLRVQL 114 (289)
Q Consensus 97 ~LaiDlGGTnlRv~~V~l 114 (289)
+|.||+|-|+++.++++-
T Consensus 2 ~L~IDiGNT~iK~~l~~~ 19 (246)
T PRK13322 2 ILELDCGNSRLKWRVIDN 19 (246)
T ss_pred EEEEEeCCCcEEEEEEcC
Confidence 689999999999999973
No 144
>PRK13411 molecular chaperone DnaK; Provisional
Probab=23.40 E-value=3e+02 Score=28.77 Aligned_cols=25 Identities=40% Similarity=0.668 Sum_probs=21.3
Q ss_pred ccccEEEEeeCCceEEEEEEEeCCC
Q 022975 93 EKGLFYALDLGGTNFRVLRVQLGGR 117 (289)
Q Consensus 93 E~G~~LaiDlGGTnlRv~~V~l~g~ 117 (289)
..+.++.+||||.++-+.++++.+.
T Consensus 184 ~~~~vlV~DlGgGT~dvsi~~~~~~ 208 (653)
T PRK13411 184 QEQLILVFDLGGGTFDVSILQLGDG 208 (653)
T ss_pred CCCEEEEEEcCCCeEEEEEEEEeCC
Confidence 3457999999999999999999653
No 145
>KOG3127 consensus Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=23.12 E-value=54 Score=29.76 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=20.0
Q ss_pred HHHhhcccccCCCcEEE--------EEEccCccc
Q 022975 232 IGTLAGGRYHNKDAIAA--------VILGTGTNA 257 (289)
Q Consensus 232 vatlla~~y~~~~~~ig--------lIlGTG~Na 257 (289)
+|.|.|.+-.++.+.|| .|+|||-|+
T Consensus 73 iA~LsA~RSkDpntqVGaCiv~~~n~iVg~GYNg 106 (230)
T KOG3127|consen 73 IAFLSAKRSKDPNTQVGACIVDRENRIVGTGYNG 106 (230)
T ss_pred HHHHHHHhccCcccceeeEEEcCCCEEEEeccCC
Confidence 67777777788888888 577788776
No 146
>PLN03184 chloroplast Hsp70; Provisional
Probab=23.09 E-value=3.3e+02 Score=28.58 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=20.6
Q ss_pred cccEEEEeeCCceEEEEEEEeCCC
Q 022975 94 KGLFYALDLGGTNFRVLRVQLGGR 117 (289)
Q Consensus 94 ~G~~LaiDlGGTnlRv~~V~l~g~ 117 (289)
...++.+|+||.++-+.++++.+.
T Consensus 223 ~~~vlV~DlGgGT~DvSi~~~~~~ 246 (673)
T PLN03184 223 NETILVFDLGGGTFDVSVLEVGDG 246 (673)
T ss_pred CCEEEEEECCCCeEEEEEEEecCC
Confidence 357999999999999999998653
No 147
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=23.02 E-value=2.7e+02 Score=28.88 Aligned_cols=24 Identities=29% Similarity=0.566 Sum_probs=20.8
Q ss_pred cccEEEEeeCCceEEEEEEEeCCC
Q 022975 94 KGLFYALDLGGTNFRVLRVQLGGR 117 (289)
Q Consensus 94 ~G~~LaiDlGGTnlRv~~V~l~g~ 117 (289)
.+.++.+|+||.++-+.++++.+.
T Consensus 200 ~~~vlV~DlGGGT~DvSv~~~~~~ 223 (616)
T PRK05183 200 EGVIAVYDLGGGTFDISILRLSKG 223 (616)
T ss_pred CCEEEEEECCCCeEEEEEEEeeCC
Confidence 457999999999999999998654
No 148
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=22.87 E-value=3.3e+02 Score=28.62 Aligned_cols=24 Identities=29% Similarity=0.601 Sum_probs=20.7
Q ss_pred cccEEEEeeCCceEEEEEEEeCCC
Q 022975 94 KGLFYALDLGGTNFRVLRVQLGGR 117 (289)
Q Consensus 94 ~G~~LaiDlGGTnlRv~~V~l~g~ 117 (289)
.+.++.+||||.+|=+.++++.+.
T Consensus 211 ~~~vlV~DlGGGT~DvSil~~~~g 234 (657)
T PTZ00186 211 DSLIAVYDLGGGTFDISVLEIAGG 234 (657)
T ss_pred CCEEEEEECCCCeEEEEEEEEeCC
Confidence 357999999999999999998654
No 149
>PRK13260 2,3-diketo-L-gulonate reductase; Provisional
Probab=22.81 E-value=1e+02 Score=29.51 Aligned_cols=56 Identities=16% Similarity=0.248 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCCCCcceeeecccccCCCCc
Q 022975 34 WARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKMLISYVDNLPTGD 92 (289)
Q Consensus 34 ~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~~~Mlps~v~~lP~G~ 92 (289)
..++++++.++-....++.++-+.+++.+.+-=..|..++ -+..+|.|+..+-.|.
T Consensus 5 ~~~l~~~~~~~l~~~G~~~~~A~~vA~~Lv~adl~G~~SH---Gl~rlp~Y~~~l~~G~ 60 (332)
T PRK13260 5 FEELKAAFKRVLLSRGVDEETADACAEMFARTTESGVYSH---GVNRFPRFIQQLENGD 60 (332)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCccc---CHHHHHHHHHHHHcCC
Confidence 5667888888888899999999999999988545555543 3789999999877764
No 150
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=22.80 E-value=87 Score=25.99 Aligned_cols=36 Identities=8% Similarity=0.133 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcc
Q 022975 36 RAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLAS 72 (289)
Q Consensus 36 ~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~ 72 (289)
.++++.++.. +..++.++.++...+|...|++-|..
T Consensus 55 Tld~F~~Q~~-~~~lte~q~e~lt~rF~~aL~~~L~~ 90 (128)
T PRK13717 55 TVDAFFDSAS-QKQLSEAQSKALSARFNTALEASLQA 90 (128)
T ss_pred HHHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443 45589999999999999999999953
No 151
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=22.55 E-value=71 Score=30.01 Aligned_cols=20 Identities=25% Similarity=0.564 Sum_probs=17.0
Q ss_pred cEEEEeeCCceEEEEEEEeCCC
Q 022975 96 LFYALDLGGTNFRVLRVQLGGR 117 (289)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~ 117 (289)
..|+||+||-|.+++. .+|+
T Consensus 4 kilGiDIGGAntk~a~--~DG~ 23 (330)
T COG1548 4 KILGIDIGGANTKIAS--SDGD 23 (330)
T ss_pred eEEEeeccCccchhhh--ccCC
Confidence 4799999999999998 4565
No 152
>TIGR00988 hip integration host factor, beta subunit. This protein forms a site-specific DNA-binding heterodimer with the homologous integration host factor alpha subunit. It is closely related to the DNA-binding protein HU.
Probab=22.48 E-value=2.3e+02 Score=21.39 Aligned_cols=36 Identities=14% Similarity=0.261 Sum_probs=29.6
Q ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhhccC
Q 022975 38 VAILKEMEEKC-GTPIGKLRQVADAMTVEMHAGLASE 73 (289)
Q Consensus 38 ~~~l~~~~~~~-~~~~~~L~~i~~~f~~em~~gL~~~ 73 (289)
.++++.+.+.. .++..+...+.+.|.++|...|...
T Consensus 4 ~eli~~i~~~~~~~s~~~v~~vv~~~~~~i~~~L~~g 40 (94)
T TIGR00988 4 SELIERIATQQSHLPAKDVEDAVKTMLEHMASALAQG 40 (94)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 45677776654 5899999999999999999999764
No 153
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=22.45 E-value=2.9e+02 Score=28.78 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=20.8
Q ss_pred cccEEEEeeCCceEEEEEEEeCCC
Q 022975 94 KGLFYALDLGGTNFRVLRVQLGGR 117 (289)
Q Consensus 94 ~G~~LaiDlGGTnlRv~~V~l~g~ 117 (289)
...++.+|+||.++-+.++++.+.
T Consensus 193 ~~~vlv~D~GggT~dvsv~~~~~~ 216 (653)
T PTZ00009 193 EKNVLIFDLGGGTFDVSLLTIEDG 216 (653)
T ss_pred CCEEEEEECCCCeEEEEEEEEeCC
Confidence 457999999999999999999654
No 154
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=22.14 E-value=67 Score=27.05 Aligned_cols=59 Identities=14% Similarity=0.206 Sum_probs=36.7
Q ss_pred CCCCcHHHHHHHHHHHcCCCce-EEEEEechH-----HHhhccccc-CCCcEEEEEEccCccceeeec
Q 022975 202 TVGEDVVGELTKAMERIGLDMR-VAALVNDTI-----GTLAGGRYH-NKDAIAAVILGTGTNAAYVER 262 (289)
Q Consensus 202 ~~g~dv~~~L~~al~r~~l~v~-v~aivNDtv-----atlla~~y~-~~~~~iglIlGTG~Na~yie~ 262 (289)
--|.++++.|.+.|+.+|+.|. +-. +|++ +.-++..-. ++...-=+|+|||.+.++.-+
T Consensus 9 h~G~~lK~~i~~~L~~~G~eV~D~G~--~~~~dYpd~a~~va~~V~~~e~~~GIliCGtGiG~siaAN 74 (141)
T TIGR01118 9 LAGKRLKDVIKNFLVDNGFEVIDVTE--GDGQDFVDVTLAVASEVQKDEQNLGIVIDAYGAGSFMVAT 74 (141)
T ss_pred cchHHHHHHHHHHHHHCCCEEEEcCC--CCCCCcHHHHHHHHHHHHcCCCceEEEEcCCCHhHhhhhh
Confidence 4568899999999999998643 221 4431 222233322 334444578999999888743
No 155
>PF02615 Ldh_2: Malate/L-lactate dehydrogenase; InterPro: IPR003767 The malate dehydrogenase (MDH) of some extremophilies is more similar to the L-lactate dehydrogenases (L-LDH) 1.1.1.27 from EC from various sources than to other MDHs []. This family consists of bacterial and archaeal malate/L-lactate dehydrogenases. The archaebacterial malate dehydrogenase 1.1.1.37 from EC, 1.1.1.82 from EC deviates from the eubacterial and eukaryotic enzymes having a low selectivity for the coenzyme (NAD(H) or NADP(H)) and catalyzing the reduction of oxalacetate to malate more efficiently than the reverse reaction [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1VBI_A 2G8Y_B 2X06_H 1Z2I_B 1X0A_A 1V9N_A 1XRH_G 3I0P_A 2CWH_B 2CWF_B ....
Probab=21.78 E-value=1e+02 Score=29.58 Aligned_cols=69 Identities=17% Similarity=0.166 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCCCCcceeeecccccCCCCc--ccccEEEEeeCCc
Q 022975 34 WARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKMLISYVDNLPTGD--EKGLFYALDLGGT 105 (289)
Q Consensus 34 ~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~~~Mlps~v~~lP~G~--E~G~~LaiDlGGT 105 (289)
.+++++++.++-....++.++-+.+++.+.+-=..|..++ -+..||.|+..+-.|. ....+-.+.-.+.
T Consensus 5 ~~~l~~~~~~il~~~G~~~~~A~~vA~~Lv~Adl~G~~SH---Gv~rlp~Y~~~l~~G~i~~~~~~~i~~~~~a 75 (335)
T PF02615_consen 5 AEELKAFVTDILQAAGVSEEDAEIVADVLVEADLRGVDSH---GVARLPRYVKRLRSGRINPRAEPKIVRETPA 75 (335)
T ss_dssp HHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHTT-GGG---TGGGHHHHHHHHHTTSSBSS---EEEEEETT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCccC---CHhHHHHHHHHhhcCcccCCCCeEEEeccCe
Confidence 5678888888888899999999999999998666666554 3788999998776664 3334444444333
No 156
>TIGR03175 AllD ureidoglycolate dehydrogenase. This enzyme converts ureidoglycolate to oxalureate in the non-urea-forming catabolism of allantoin (GenProp0687). The pathway has been characterized in E. coli and is observed in the genomes of Entercoccus faecalis and Bacillus licheniformis.
Probab=21.50 E-value=1.1e+02 Score=29.58 Aligned_cols=56 Identities=20% Similarity=0.214 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCCCCcceeeecccccCCCCc
Q 022975 34 WARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKMLISYVDNLPTGD 92 (289)
Q Consensus 34 ~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~~~Mlps~v~~lP~G~ 92 (289)
..++.+++.++.+...++.+.-..+++.+.+-=..|..++ -+..||.|+..+-.|.
T Consensus 5 ~~~l~~~~~~~l~~~G~~~~~A~~vA~~Lv~Adl~G~~SH---Gv~rlp~Y~~~l~~G~ 60 (349)
T TIGR03175 5 RETLHQLIKQKLYKAGLKREHAAIVADVLTFADARGIHSH---GAVRVEYYAERIAKGG 60 (349)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcccc---CHHHHHHHHHHHHcCC
Confidence 4567788888888899999999999999988655555554 3789999998776664
No 157
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=20.79 E-value=3.2e+02 Score=28.17 Aligned_cols=24 Identities=33% Similarity=0.620 Sum_probs=20.8
Q ss_pred cccEEEEeeCCceEEEEEEEeCCC
Q 022975 94 KGLFYALDLGGTNFRVLRVQLGGR 117 (289)
Q Consensus 94 ~G~~LaiDlGGTnlRv~~V~l~g~ 117 (289)
.+.++.+|+||.++=+.++++.+.
T Consensus 180 ~~~vlV~DlGgGT~DvSi~~~~~~ 203 (599)
T TIGR01991 180 EGIYAVYDLGGGTFDVSILKLTKG 203 (599)
T ss_pred CCEEEEEEcCCCeEEEEEEEEcCC
Confidence 457999999999999999998653
No 158
>PRK04792 tolB translocation protein TolB; Provisional
Probab=20.52 E-value=2e+02 Score=28.32 Aligned_cols=63 Identities=19% Similarity=0.143 Sum_probs=42.2
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHhhccCCCCcceeeecccccCCCCcccccEEEEeeCCceEEE
Q 022975 46 EKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRV 109 (289)
Q Consensus 46 ~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~~~Mlps~v~~lP~G~E~G~~LaiDlGGTnlRv 109 (289)
+.|..+.++++.++.+|..++.+.|.++.. -..---.|+..-+.+...-.....|..|.|.|.
T Consensus 150 ~~~~~~~~~~r~~~h~~~d~i~~~ltG~~g-~f~~riayv~~~~~~~~~~~l~i~d~dG~~~~~ 212 (448)
T PRK04792 150 RVAVISAAQFRQYAHRISDIVYEKLTGERG-AFLTRIAYVVVNDKDKYPYQLMIADYDGYNEQM 212 (448)
T ss_pred eeEEeCHHHHHHHHHHHHHHHHHHhcCCCc-cccCEEEEEEeeCCCCCceEEEEEeCCCCCceE
Confidence 356789999999999999999999987542 222223455432222223345567998888875
No 159
>COG2055 Malate/L-lactate dehydrogenases [Energy production and conversion]
Probab=20.31 E-value=1.4e+02 Score=28.91 Aligned_cols=59 Identities=29% Similarity=0.399 Sum_probs=48.0
Q ss_pred cHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCCCCcceeeecccccCCCCccc
Q 022975 33 RWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKMLISYVDNLPTGDEK 94 (289)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~~~Mlps~v~~lP~G~E~ 94 (289)
.+.++.+++.+.-....++.++-+.+++.|..-=..|..+++ +..+|-|+..|-.|.-.
T Consensus 7 ~~e~L~~~~~~vl~~~G~~ee~A~~vA~~lv~ad~~G~~SHG---v~r~p~yi~~l~~G~i~ 65 (349)
T COG2055 7 SAEELKALIEEVLRKAGVPEEDARAVADVLVAADLRGVDSHG---VGRLPGYVRRLKAGKIN 65 (349)
T ss_pred cHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccc---hHHHHHHHHHHHcCCcC
Confidence 466788888888888999999999999999987677776543 78999999987777543
No 160
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=20.21 E-value=1.2e+02 Score=22.75 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=17.1
Q ss_pred CCcHHHHHHHHHHHcCCCc
Q 022975 204 GEDVVGELTKAMERIGLDM 222 (289)
Q Consensus 204 g~dv~~~L~~al~r~~l~v 222 (289)
|..+.+.|.++++++|++.
T Consensus 19 G~ti~d~L~kllekRgl~~ 37 (73)
T cd01817 19 GESIRDLLSGLCEKRGINY 37 (73)
T ss_pred CCCHHHHHHHHHHHcCCCh
Confidence 6889999999999999874
No 161
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=20.20 E-value=2e+02 Score=29.21 Aligned_cols=63 Identities=24% Similarity=0.259 Sum_probs=38.7
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEeeeEEeecCCCcccC--CchhHHHHHHHHHHHHHHhc
Q 022975 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTG--SSHELFDYIAAALAKFVATE 158 (289)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~Ip~~~~~~--~~~~lfd~Ia~~I~~fl~~~ 158 (289)
.+-+||+|-.+||..+++.....-+++........+-+.+... =.++-.+...+|++.|.+..
T Consensus 4 ~~A~IDiGSNS~rlvV~~~~~~~~~~l~~~k~~vrLgegl~~~g~L~~eai~R~~~aL~~f~e~~ 68 (492)
T COG0248 4 RVAAIDLGSNSFRLVVAEITPGSFQVLFREKRIVRLGEGLDATGNLSEEAIERALSALKRFAELL 68 (492)
T ss_pred eEEEEEecCCeEEEEEEeccCCccchhhhhhhheehhcCccccCCcCHHHHHHHHHHHHHHHHHH
Confidence 4779999999999999997632112222222233334433211 14567788888888887643
No 162
>PF09907 DUF2136: Uncharacterized protein conserved in bacteria (DUF2136); InterPro: IPR018669 HigB (YgjN) is the toxin of the HigB-HigA toxin-antitoxin system, acting as a translation-dependent mRNA interferase. HigB inhibits protein synthesis by cleaving translated mRNAs within the coding region []. ; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=20.19 E-value=1.2e+02 Score=22.62 Aligned_cols=21 Identities=14% Similarity=0.588 Sum_probs=16.8
Q ss_pred ccEEEEeeCCceEEEE-EEEeC
Q 022975 95 GLFYALDLGGTNFRVL-RVQLG 115 (289)
Q Consensus 95 G~~LaiDlGGTnlRv~-~V~l~ 115 (289)
+.+...|+||.+.|+. .|...
T Consensus 36 ~~~~vFnI~GN~yRlI~~I~f~ 57 (76)
T PF09907_consen 36 NNRVVFNIGGNKYRLIAKIDFE 57 (76)
T ss_pred CCEEEEEcCCCcEEEEEEEEeC
Confidence 6689999999999984 35553
Done!