Query 022976
Match_columns 289
No_of_seqs 117 out of 1076
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 07:32:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022976.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022976hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06604 GH31_glucosidase_II_Ma 100.0 6.7E-76 1.5E-80 546.1 25.6 278 5-285 44-323 (339)
2 PLN02763 hydrolase, hydrolyzin 100.0 1E-75 2.3E-80 591.7 26.9 280 5-284 221-501 (978)
3 cd06603 GH31_GANC_GANAB_alpha 100.0 2.7E-74 5.9E-79 535.2 26.0 276 5-286 44-324 (339)
4 cd06600 GH31_MGAM-like This fa 100.0 4.1E-74 9E-79 529.2 24.4 256 5-285 44-301 (317)
5 cd06598 GH31_transferase_CtsZ 100.0 1.7E-72 3.6E-77 518.7 24.1 260 5-281 44-314 (317)
6 cd06602 GH31_MGAM_SI_GAA This 100.0 1.7E-71 3.8E-76 515.7 24.7 256 5-286 44-306 (339)
7 cd06593 GH31_xylosidase_YicI Y 100.0 1.2E-70 2.6E-75 504.9 24.0 258 5-283 44-305 (308)
8 cd06594 GH31_glucosidase_YihQ 100.0 6E-70 1.3E-74 501.1 22.3 245 15-275 62-315 (317)
9 cd06591 GH31_xylosidase_XylS X 100.0 1.3E-69 2.9E-74 499.8 24.4 260 5-276 44-318 (319)
10 cd06601 GH31_lyase_GLase GLase 100.0 1.5E-69 3.3E-74 499.7 24.3 251 5-281 44-329 (332)
11 KOG1066 Glucosidase II catalyt 100.0 6.7E-71 1.4E-75 525.9 14.4 271 6-283 388-669 (915)
12 cd06599 GH31_glycosidase_Aec37 100.0 8.9E-70 1.9E-74 500.5 21.3 259 5-276 49-316 (317)
13 PRK10658 putative alpha-glucos 100.0 2.2E-69 4.9E-74 536.8 23.8 262 5-285 303-567 (665)
14 COG1501 Alpha-glucosidases, fa 100.0 3.2E-69 7E-74 540.1 22.6 265 5-286 300-569 (772)
15 cd06597 GH31_transferase_CtsY 100.0 1.9E-67 4.2E-72 488.6 21.3 246 13-274 73-332 (340)
16 PF01055 Glyco_hydro_31: Glyco 100.0 5.5E-66 1.2E-70 495.4 21.9 275 5-286 63-340 (441)
17 PRK10426 alpha-glucosidase; Pr 100.0 2.7E-64 5.8E-69 499.1 24.2 250 14-282 259-519 (635)
18 cd06592 GH31_glucosidase_KIAA1 100.0 5.3E-63 1.1E-67 452.9 20.3 240 5-277 50-303 (303)
19 cd06595 GH31_xylosidase_XylS-l 100.0 6.8E-62 1.5E-66 443.4 18.9 235 5-277 45-292 (292)
20 cd06589 GH31 The enzymes of gl 100.0 1.4E-59 3.1E-64 422.9 20.3 217 5-277 44-265 (265)
21 KOG1065 Maltase glucoamylase a 100.0 4.8E-57 1E-61 442.3 16.9 270 3-281 329-601 (805)
22 cd06596 GH31_CPE1046 CPE1046 i 100.0 2.2E-40 4.7E-45 290.7 16.1 131 152-284 124-254 (261)
23 PF02065 Melibiase: Melibiase; 99.0 5.3E-09 1.1E-13 99.0 14.5 108 6-120 77-194 (394)
24 PLN03231 putative alpha-galact 98.6 9.6E-07 2.1E-11 82.3 15.3 167 13-213 69-256 (357)
25 PLN02899 alpha-galactosidase 98.4 1.8E-05 3.9E-10 77.8 16.3 163 13-213 96-287 (633)
26 PLN02229 alpha-galactosidase 98.2 5.9E-05 1.3E-09 71.9 14.5 138 6-214 104-255 (427)
27 PLN02692 alpha-galactosidase 98.1 0.00015 3.3E-09 68.8 16.1 139 6-214 97-249 (412)
28 PLN02808 alpha-galactosidase 98.0 0.00024 5.3E-09 67.1 15.0 140 5-214 72-225 (386)
29 PF14871 GHL6: Hypothetical gl 97.0 0.0036 7.8E-08 50.5 7.7 84 27-117 47-132 (132)
30 PRK03705 glycogen debranching 96.6 0.01 2.2E-07 60.3 9.4 91 25-118 243-338 (658)
31 TIGR02104 pulA_typeI pullulana 96.5 0.014 3.1E-07 58.7 9.3 89 25-118 230-321 (605)
32 PF00128 Alpha-amylase: Alpha 96.4 0.0084 1.8E-07 53.9 6.8 95 25-119 53-171 (316)
33 PRK14510 putative bifunctional 96.2 0.022 4.8E-07 61.6 9.4 94 25-119 248-345 (1221)
34 TIGR02100 glgX_debranch glycog 96.2 0.028 6E-07 57.4 9.7 93 25-119 246-344 (688)
35 TIGR02456 treS_nterm trehalose 96.2 0.02 4.3E-07 56.9 8.5 91 26-118 78-199 (539)
36 TIGR01515 branching_enzym alph 96.2 0.022 4.7E-07 57.5 8.6 91 22-118 201-297 (613)
37 PRK10785 maltodextrin glucosid 95.9 0.039 8.3E-07 55.6 9.2 90 25-119 227-338 (598)
38 PF13200 DUF4015: Putative gly 95.9 0.043 9.4E-07 50.7 8.6 88 23-119 60-147 (316)
39 COG3345 GalA Alpha-galactosida 95.6 0.018 3.9E-07 56.2 5.1 106 6-118 328-443 (687)
40 PF02638 DUF187: Glycosyl hydr 95.6 0.057 1.2E-06 49.9 8.2 89 26-116 72-161 (311)
41 TIGR02402 trehalose_TreZ malto 95.6 0.12 2.5E-06 51.5 10.9 81 26-119 162-247 (542)
42 PLN00196 alpha-amylase; Provis 95.6 0.11 2.3E-06 50.2 10.3 103 16-118 81-205 (428)
43 TIGR02102 pullulan_Gpos pullul 95.6 0.061 1.3E-06 57.4 9.2 85 26-118 557-644 (1111)
44 COG1523 PulA Type II secretory 95.5 0.066 1.4E-06 54.4 8.9 90 26-119 267-362 (697)
45 PRK10933 trehalose-6-phosphate 95.3 0.081 1.8E-06 52.7 8.9 34 86-119 170-203 (551)
46 KOG2366 Alpha-D-galactosidase 95.3 0.12 2.5E-06 48.4 9.0 173 6-253 84-290 (414)
47 TIGR02403 trehalose_treC alpha 95.0 0.093 2E-06 52.2 8.2 93 25-119 76-196 (543)
48 PLN02447 1,4-alpha-glucan-bran 95.0 0.079 1.7E-06 54.4 7.7 96 21-122 294-396 (758)
49 PRK14705 glycogen branching en 94.9 0.25 5.4E-06 53.4 11.5 93 22-120 810-908 (1224)
50 TIGR02103 pullul_strch alpha-1 94.8 0.12 2.7E-06 54.0 8.8 89 25-118 405-498 (898)
51 PRK12568 glycogen branching en 94.8 0.18 3.8E-06 51.7 9.7 97 16-119 309-411 (730)
52 PLN03244 alpha-amylase; Provis 94.6 0.12 2.6E-06 53.0 7.8 95 21-121 435-536 (872)
53 PRK12313 glycogen branching en 94.6 0.17 3.6E-06 51.4 9.0 87 26-119 222-312 (633)
54 PRK05402 glycogen branching en 94.6 0.17 3.7E-06 52.1 9.1 87 27-119 318-407 (726)
55 PRK14706 glycogen branching en 94.5 0.73 1.6E-05 46.8 13.3 93 21-120 211-310 (639)
56 COG1649 Uncharacterized protei 94.4 0.15 3.3E-06 48.7 7.6 95 20-117 110-207 (418)
57 PLN02960 alpha-amylase 94.1 0.21 4.6E-06 51.8 8.4 89 27-121 469-561 (897)
58 PLN02361 alpha-amylase 93.7 0.43 9.3E-06 45.7 9.2 35 85-119 147-182 (401)
59 TIGR01370 cysRS possible cyste 93.4 0.29 6.4E-06 45.2 7.3 84 27-120 84-171 (315)
60 PLN02877 alpha-amylase/limit d 93.2 0.47 1E-05 50.0 9.2 89 26-119 468-562 (970)
61 PRK09441 cytoplasmic alpha-amy 93.1 0.51 1.1E-05 46.2 8.9 33 87-119 203-236 (479)
62 PLN02784 alpha-amylase 92.4 0.67 1.4E-05 48.2 8.9 34 86-119 642-676 (894)
63 COG0366 AmyA Glycosidases [Car 91.4 1 2.2E-05 43.7 8.7 33 87-119 169-201 (505)
64 KOG0471 Alpha-amylase [Carbohy 91.3 0.97 2.1E-05 45.1 8.6 37 84-120 180-217 (545)
65 KOG0470 1,4-alpha-glucan branc 91.0 0.67 1.5E-05 47.0 7.0 91 25-121 312-407 (757)
66 PRK09505 malS alpha-amylase; R 88.6 1.5 3.3E-05 44.8 7.6 29 91-119 435-464 (683)
67 COG0296 GlgB 1,4-alpha-glucan 87.6 2.9 6.2E-05 42.3 8.6 93 21-122 208-309 (628)
68 PLN02355 probable galactinol-- 86.8 3.2 6.9E-05 42.6 8.5 28 92-119 370-397 (758)
69 PF13199 Glyco_hydro_66: Glyco 86.1 2.4 5.2E-05 42.3 7.1 89 27-118 173-267 (559)
70 PF01120 Alpha_L_fucos: Alpha- 85.1 3.3 7.1E-05 38.8 7.3 27 17-44 85-111 (346)
71 PLN02684 Probable galactinol-- 84.4 4.5 9.8E-05 41.4 8.2 28 92-119 361-388 (750)
72 PF14885 GHL15: Hypothetical g 83.2 2.6 5.6E-05 30.8 4.5 56 61-118 17-76 (79)
73 smart00812 Alpha_L_fucos Alpha 81.9 5.6 0.00012 37.9 7.5 27 17-44 75-101 (384)
74 COG2342 Predicted extracellula 80.1 5.6 0.00012 36.1 6.3 41 80-121 111-151 (300)
75 PRK13840 sucrose phosphorylase 67.0 7.4 0.00016 38.4 4.2 34 85-118 162-195 (495)
76 cd06542 GH18_EndoS-like Endo-b 63.2 30 0.00065 30.5 7.1 59 27-118 54-113 (255)
77 PLN02711 Probable galactinol-- 62.0 44 0.00096 34.6 8.6 28 92-119 381-408 (777)
78 PF13653 GDPD_2: Glycerophosph 60.7 9.4 0.0002 22.5 2.2 17 101-117 12-28 (30)
79 PF05691 Raffinose_syn: Raffin 58.2 59 0.0013 33.7 8.8 27 93-119 365-391 (747)
80 TIGR03852 sucrose_gtfA sucrose 56.1 16 0.00035 35.8 4.3 34 85-118 158-191 (470)
81 cd02871 GH18_chitinase_D-like 55.8 49 0.0011 30.4 7.3 57 27-119 63-120 (312)
82 PF02449 Glyco_hydro_42: Beta- 53.9 39 0.00086 31.7 6.6 90 23-122 46-140 (374)
83 cd02874 GH18_CFLE_spore_hydrol 43.3 64 0.0014 29.4 6.0 29 90-118 83-112 (313)
84 PF03537 Glyco_hydro_114: Glyc 43.2 27 0.00059 24.9 2.8 32 13-46 27-58 (74)
85 KOG3111 D-ribulose-5-phosphate 42.8 23 0.00049 30.5 2.7 39 13-51 88-126 (224)
86 cd08584 PI-PLCc_GDPD_SF_unchar 42.0 24 0.00052 30.3 2.8 40 2-49 120-160 (192)
87 cd02877 GH18_hevamine_XipI_cla 40.9 1.3E+02 0.0028 27.3 7.5 24 22-45 57-80 (280)
88 smart00642 Aamy Alpha-amylase 40.6 28 0.00061 28.9 2.9 22 26-47 72-93 (166)
89 TIGR01691 enolase-ppase 2,3-di 40.5 31 0.00068 30.1 3.3 36 9-44 82-118 (220)
90 cd02875 GH18_chitobiase Chitob 38.1 96 0.0021 29.1 6.5 60 23-120 62-123 (358)
91 COG1306 Uncharacterized conser 37.1 1.4E+02 0.0031 27.7 6.9 87 21-117 121-217 (400)
92 PRK14582 pgaB outer membrane N 36.6 1.2E+02 0.0027 31.2 7.2 74 33-117 390-466 (671)
93 PRK09454 ugpQ cytoplasmic glyc 35.7 80 0.0017 27.8 5.3 18 101-118 222-239 (249)
94 PRK06769 hypothetical protein; 35.1 49 0.0011 27.4 3.6 22 22-43 29-50 (173)
95 cd06545 GH18_3CO4_chitinase Th 32.5 1.4E+02 0.0029 26.3 6.2 30 90-119 79-109 (253)
96 PF06418 CTP_synth_N: CTP synt 30.9 62 0.0013 29.3 3.6 39 29-70 23-63 (276)
97 TIGR00213 GmhB_yaeD D,D-heptos 30.2 65 0.0014 26.6 3.5 22 22-43 27-48 (176)
98 cd08556 GDPD Glycerophosphodie 30.0 1.4E+02 0.003 24.4 5.5 17 100-116 172-188 (189)
99 KOG0674 Calreticulin [Posttran 30.0 22 0.00049 32.8 0.7 11 221-231 131-141 (406)
100 cd08613 GDPD_GDE4_like_1 Glyce 29.9 1.2E+02 0.0027 28.0 5.5 20 100-119 286-305 (309)
101 cd03113 CTGs CTP synthetase (C 29.6 1.1E+02 0.0023 27.5 4.9 26 28-53 21-47 (255)
102 TIGR01656 Histidinol-ppas hist 29.4 67 0.0015 25.6 3.4 23 22-44 28-50 (147)
103 TIGR01261 hisB_Nterm histidino 29.2 70 0.0015 26.3 3.5 22 22-43 30-51 (161)
104 PF07611 DUF1574: Protein of u 29.2 29 0.00062 32.6 1.3 36 13-49 241-276 (345)
105 PF12692 Methyltransf_17: S-ad 28.5 56 0.0012 27.0 2.7 81 162-253 41-125 (160)
106 TIGR01664 DNA-3'-Pase DNA 3'-p 27.6 77 0.0017 26.2 3.5 22 23-44 44-65 (166)
107 PF13344 Hydrolase_6: Haloacid 27.6 80 0.0017 23.7 3.3 25 19-43 12-36 (101)
108 COG3510 CmcI Cephalosporin hyd 27.1 75 0.0016 27.6 3.3 49 236-284 163-211 (237)
109 PLN02219 probable galactinol-- 26.4 73 0.0016 33.1 3.6 28 92-119 362-389 (775)
110 cd00419 Ferrochelatase_C Ferro 25.6 90 0.0019 24.9 3.5 27 24-50 77-103 (135)
111 TIGR01662 HAD-SF-IIIA HAD-supe 25.1 97 0.0021 23.9 3.5 25 21-45 25-49 (132)
112 cd06547 GH85_ENGase Endo-beta- 24.8 1.2E+02 0.0026 28.4 4.6 22 22-43 43-65 (339)
113 COG3669 Alpha-L-fucosidase [Ca 24.4 1E+02 0.0023 29.5 4.0 26 18-44 49-74 (430)
114 PF01301 Glyco_hydro_35: Glyco 23.7 71 0.0015 29.5 2.9 37 14-52 55-91 (319)
115 PRK09722 allulose-6-phosphate 23.7 3E+02 0.0065 24.2 6.6 35 16-50 86-121 (229)
116 KOG4549 Magnesium-dependent ph 23.1 89 0.0019 25.1 2.8 22 23-44 46-67 (144)
117 PRK12857 fructose-1,6-bisphosp 22.7 4.9E+02 0.011 23.7 8.0 99 152-281 23-122 (284)
118 PF00834 Ribul_P_3_epim: Ribul 22.7 84 0.0018 27.0 2.9 36 16-51 84-119 (201)
119 KOG2387 CTP synthase (UTP-ammo 22.6 1.1E+02 0.0025 29.8 3.9 23 31-53 25-48 (585)
120 TIGR00559 pdxJ pyridoxine 5'-p 22.5 95 0.0021 27.6 3.2 28 22-49 108-135 (237)
121 PLN02982 galactinol-raffinose 22.2 97 0.0021 32.4 3.6 29 91-119 463-492 (865)
122 PRK05265 pyridoxine 5'-phospha 22.1 1E+02 0.0022 27.4 3.3 28 22-49 111-138 (239)
123 PF13986 DUF4224: Domain of un 21.8 1.2E+02 0.0027 19.6 2.9 21 22-42 13-33 (47)
124 COG0826 Collagenase and relate 21.5 3.1E+02 0.0067 25.8 6.7 25 23-47 46-72 (347)
125 PF04914 DltD_C: DltD C-termin 21.2 55 0.0012 26.2 1.4 25 23-47 35-59 (130)
126 PF03740 PdxJ: Pyridoxal phosp 21.2 1E+02 0.0022 27.4 3.1 27 23-49 110-136 (239)
127 PF04273 DUF442: Putative phos 21.0 97 0.0021 23.9 2.7 21 27-47 17-37 (110)
128 cd00003 PNPsynthase Pyridoxine 20.9 1.1E+02 0.0023 27.2 3.2 28 22-49 108-135 (234)
129 PF11308 GHL1-3: Glycosyl hydr 20.8 1.6E+02 0.0035 27.1 4.6 54 60-117 70-127 (307)
130 TIGR00217 malQ 4-alpha-glucano 20.8 84 0.0018 31.2 2.9 70 33-106 221-302 (513)
131 PF14872 GHL5: Hypothetical gl 20.5 1.2E+02 0.0025 31.2 3.6 39 85-123 357-395 (811)
132 PRK14508 4-alpha-glucanotransf 20.2 1.3E+02 0.0027 29.8 3.9 72 31-106 205-288 (497)
No 1
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=100.00 E-value=6.7e-76 Score=546.11 Aligned_cols=278 Identities=54% Similarity=1.022 Sum_probs=258.2
Q ss_pred cchhhccc-CcccccCCCCCCChHHHHHHHHHCCCeEEEeeCCeeccCCCccccccccccceeeecCCCCceeeeecCCc
Q 022976 5 WILTTWMD-FVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGP 83 (289)
Q Consensus 5 ~~~~~w~d-~~~f~~d~~~FPdp~~~i~~L~~~g~k~~~~v~P~i~~~~~~~~y~~~~~~~~~v~~~~g~~~~~~~w~g~ 83 (289)
|||..|++ +++|+||+++||||++|+++||++|+|++++++|+|+.+++|++|++++++|+||++++|+++++.+|+|.
T Consensus 44 ~lD~~~~~~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~ 123 (339)
T cd06604 44 YLDIDYMDGYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKVDPGYDVYEEGLENDYFVKDPDGELYIGRVWPGL 123 (339)
T ss_pred EECchhhCCCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeCCCCChHHHHHHHCCeEEECCCCCEEEEEecCCC
Confidence 67777877 89999999999999999999999999999999999998777889999999999999999999999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHhcCccEEEecCCCCcccCCCCC-CCCCCCCCCCCCCCCCcccccchhhHHHHHHHHH
Q 022976 84 CVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTK-TMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARS 162 (289)
Q Consensus 84 ~~~~Dftnp~a~~ww~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~-~lp~~~~~~~~~~~g~~~~~~~~hN~y~~~~~~a 162 (289)
+++||||||+|++||.++++++++.||||||+|+|||+.++.... ++|.+..|.+.. +...+.++||+|++++++|
T Consensus 124 ~~~~Dftnp~a~~ww~~~~~~~~~~Gvdg~w~D~~Ep~~~~~~~~~~~p~~~~~~~~~---~~~~~~~~hn~y~~~~~~a 200 (339)
T cd06604 124 SAFPDFTNPKVREWWGSLYKKFVDLGVDGIWNDMNEPAVFNTPGKTTMPRDAVHRLDG---GGGTHEEVHNVYGLLMARA 200 (339)
T ss_pred ccccCCCChHHHHHHHHHHHHHhhCCCceEeecCCCccccCCcccccCCccceeeCCC---CCCcHhHhcchhhHHHHHH
Confidence 999999999999999999999999999999999999998865543 478887776432 1236789999999999999
Q ss_pred HHHHHHhhcCCCCcEEEEcccccCCCccceeeCCCCCCCchHHHHHHHHHHHhhccCCCccccCCCCCCCCCChhHHHHH
Q 022976 163 TYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRW 242 (289)
Q Consensus 163 ~~~~~~~~~~~~r~~~~sRs~~~G~qry~~~W~GD~~s~W~~L~~~I~~~l~~~l~G~p~~g~DIgGf~g~~~~EL~~RW 242 (289)
+++++++..+++|+|+++||+++|+|||+++|+||+.++|++|+.+|+.+|++|++|+|++|+|||||.+++++|||+||
T Consensus 201 ~~~~~~~~~~~~r~~~~sRs~~~G~qry~~~W~GD~~ssW~~L~~~i~~~l~~~l~G~~~~g~DIGGf~~~~~~EL~~RW 280 (339)
T cd06604 201 TYEGLKKARPNERPFILTRAGYAGIQRYAAVWTGDNRSSWEHLRLSIPMLLNLGLSGVPFVGADIGGFGGDPSPELLVRW 280 (339)
T ss_pred HHHHHHHhCCCCCcEEEEecccccccccccccCCcccCCHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCCHHHHHHH
Confidence 99999998889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcccccccCCCCCCCCCccccChhhHHHHHHHHHHHhh
Q 022976 243 MGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAFFW 285 (289)
Q Consensus 243 ~Q~g~f~P~~R~h~~~~~~~~ePw~~~~~~~~~~r~~i~~~~~ 285 (289)
+|+|+|+|+||+|+..+..++|||.|++++.+++|++++-..+
T Consensus 281 ~Q~g~f~P~~R~H~~~~~~~~ePw~~~~~~~~~~r~~~~lRy~ 323 (339)
T cd06604 281 MQLGAFFPFFRNHSAKGTRDQEPWAFGEEVEEIAREAIKLRYR 323 (339)
T ss_pred HHHHhccchhhccCCCCCCCCCCeecChHHHHHHHHHHHHHHH
Confidence 9999999999999987778999999999999999999986654
No 2
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=100.00 E-value=1e-75 Score=591.67 Aligned_cols=280 Identities=76% Similarity=1.377 Sum_probs=266.5
Q ss_pred cchhhccc-CcccccCCCCCCChHHHHHHHHHCCCeEEEeeCCeeccCCCccccccccccceeeecCCCCceeeeecCCc
Q 022976 5 WILTTWMD-FVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGP 83 (289)
Q Consensus 5 ~~~~~w~d-~~~f~~d~~~FPdp~~~i~~L~~~g~k~~~~v~P~i~~~~~~~~y~~~~~~~~~v~~~~g~~~~~~~w~g~ 83 (289)
|+|-.||+ +++|+||+++||||++|+++||++|+|++++++|+|+.+++|..|+++.++++||++++|++|++.+|||.
T Consensus 221 wlDidYm~g~~~FTwD~~rFPdP~~mv~~Lh~~G~kvv~iidPgI~~d~gY~~y~eg~~~~~fvk~~~G~~y~G~vWpG~ 300 (978)
T PLN02763 221 WMDIDYMDGFRCFTFDKERFPDPKGLADDLHSIGFKAIWMLDPGIKAEEGYFVYDSGCENDVWIQTADGKPFVGEVWPGP 300 (978)
T ss_pred EEehhhhcCCCceeECcccCCCHHHHHHHHHHCCCEEEEEEcCCCccCCCCHHHHhHhhcCeeEECCCCCeeEeeecCCC
Confidence 77777887 89999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHhcCccEEEecCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHH
Q 022976 84 CVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARST 163 (289)
Q Consensus 84 ~~~~Dftnp~a~~ww~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~lp~~~~~~~~~~~g~~~~~~~~hN~y~~~~~~a~ 163 (289)
+++||||||+|++||.++++++++.||||||+|+|||+.|+....++|..+.|.++...|+.++|.++||+|++++++|+
T Consensus 301 ~~fpDFTnP~ar~WW~~~~k~l~d~GVDG~W~DmnEPa~f~~~~~t~P~~~~h~g~~~~gG~~~h~~~HNlYgll~akat 380 (978)
T PLN02763 301 CVFPDFTNKKTRSWWANLVKDFVSNGVDGIWNDMNEPAVFKTVTKTMPETNIHRGDEELGGVQNHSHYHNVYGMLMARST 380 (978)
T ss_pred ccccCCCCHHHHHHHHHHHHHHhcCCCcEEEccCCCCccccCCcCCCCccccccCCcccCCccCHHHHhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999998877789999999887666666789999999999999999
Q ss_pred HHHHHhhcCCCCcEEEEcccccCCCccceeeCCCCCCCchHHHHHHHHHHHhhccCCCccccCCCCCCCCCChhHHHHHH
Q 022976 164 YEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWM 243 (289)
Q Consensus 164 ~~~~~~~~~~~r~~~~sRs~~~G~qry~~~W~GD~~s~W~~L~~~I~~~l~~~l~G~p~~g~DIgGf~g~~~~EL~~RW~ 243 (289)
|+++++..+++|||++|||+|+|+|||+++|+||+.++|++|+.+|+++|++||||+||||+|||||.+++++|||+||+
T Consensus 381 yEgl~~~~~~kRPFilTRSgfaGsQRYaa~WtGDn~SsWe~L~~sI~~~LnlgLSGipf~G~DIGGF~G~~~~ELy~RW~ 460 (978)
T PLN02763 381 YEGMLLANKNKRPFVLTRAGFIGSQRYAATWTGDNLSNWEHLHMSIPMVLQLGLSGQPLSGPDIGGFAGDATPKLFGRWM 460 (978)
T ss_pred HHHHHHhCCCCCcEEEEccccCcCCCCceEECCCccCCHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCCHHHHHHHH
Confidence 99999888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcccccccCCCCCCCCCccccChhhHHHHHHHHHHHh
Q 022976 244 GIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAFF 284 (289)
Q Consensus 244 Q~g~f~P~~R~h~~~~~~~~ePw~~~~~~~~~~r~~i~~~~ 284 (289)
|+|+|+|+||+|+..++.++|||.|++++++++|++|+--.
T Consensus 461 Q~GaF~P~fR~Hs~~gt~~qEPW~fgeev~~i~R~ai~LRY 501 (978)
T PLN02763 461 GVGAMFPFARGHSEQGTIDHEPWSFGEECEEVCRLALKRRY 501 (978)
T ss_pred HHhhhhHHhhhccCCCCCCcCCeecChHHHHHHHHHHHHHH
Confidence 99999999999998888899999999999999999997543
No 3
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=100.00 E-value=2.7e-74 Score=535.22 Aligned_cols=276 Identities=42% Similarity=0.801 Sum_probs=256.6
Q ss_pred cchhhccc-CcccccCCCCCCChHHHHHHHHHCCCeEEEeeCCeeccCCCccccccccccceeeecCCCCceeeeecCCc
Q 022976 5 WILTTWMD-FVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGP 83 (289)
Q Consensus 5 ~~~~~w~d-~~~f~~d~~~FPdp~~~i~~L~~~g~k~~~~v~P~i~~~~~~~~y~~~~~~~~~v~~~~g~~~~~~~w~g~ 83 (289)
|||..|++ +++|+||+++||||++|+++||++|+|++++++|+|..++++++|++++++|+||++.+|+++++.+|||.
T Consensus 44 ~lD~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~ 123 (339)
T cd06603 44 WLDIEHTDGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKDKGYLVKNSDGGDFEGWCWPGS 123 (339)
T ss_pred EEChHHhCCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHHCCeEEECCCCCEEEEEECCCC
Confidence 67777777 88999999999999999999999999999999999998777889999999999999999999999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHh---cCccEEEecCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHH
Q 022976 84 CVFPDYTQSKVRSWWGSLVKDFIY---NGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMA 160 (289)
Q Consensus 84 ~~~~Dftnp~a~~ww~~~~~~~~~---~Gvdg~w~D~~E~~~~~~~~~~lp~~~~~~~~~~~g~~~~~~~~hN~y~~~~~ 160 (289)
+++||||||+|++||.+++++++. .|++|+|+|++||+.|+..+.++|.+..+.+. ..+.++||+|+++++
T Consensus 124 ~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~w~D~~Ep~~f~~~~~~~p~d~~~~~~------~~~~~~hN~y~~~~~ 197 (339)
T cd06603 124 SSWPDFLNPEVRDWWASLFSYDKYKGSTENLYIWNDMNEPSVFNGPELTMPKDAIHYGG------IEHREVHNIYGLYMH 197 (339)
T ss_pred cCCccCCChhHHHHHHHHHHHHhhcccCCCceEEeccCCccccCCCCCcCCCcceecCC------CcHHHHhhHhHHHHH
Confidence 999999999999999999998764 78999999999999998777778887766541 257899999999999
Q ss_pred HHHHHHHHhhcC-CCCcEEEEcccccCCCccceeeCCCCCCCchHHHHHHHHHHHhhccCCCccccCCCCCCCCCChhHH
Q 022976 161 RSTYEGMKLADK-DKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLF 239 (289)
Q Consensus 161 ~a~~~~~~~~~~-~~r~~~~sRs~~~G~qry~~~W~GD~~s~W~~L~~~I~~~l~~~l~G~p~~g~DIgGf~g~~~~EL~ 239 (289)
+++++++++..+ ++|+|+++||+++|+|||+++|+||+.|+|++|+.+|+++|++|++|+|+||+|||||.+++++|||
T Consensus 198 ~a~~e~~~~~~~~~~r~~~~sRs~~~G~qry~~~W~GD~~s~W~~L~~~i~~~L~~~l~G~~~~g~DiGGf~~~~~~EL~ 277 (339)
T cd06603 198 MATFDGLLKRSEGNKRPFVLTRSFFAGSQRYAAIWTGDNTATWEHLKISIPMLLSLNICGIPFCGADVGGFFGNPDEELL 277 (339)
T ss_pred HHHHHHHHHhhccCCceEEEEecccccccceeeeeCCCccCCHHHHHHHHHHHHHHhhcCccccCCccCCcCCCCCHHHH
Confidence 999999998764 6899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcccccccCCCCCCCCCccccChhhHHHHHHHHHHHhhh
Q 022976 240 GRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAFFWF 286 (289)
Q Consensus 240 ~RW~Q~g~f~P~~R~h~~~~~~~~ePw~~~~~~~~~~r~~i~~~~~~ 286 (289)
+||+|+|+|+|+||+|+..+...++||.|++++.+++|++|+-..++
T Consensus 278 ~RW~Q~gaf~P~~R~H~~~~~~~~ePw~~~~~~~~~~r~~~~lRy~L 324 (339)
T cd06603 278 VRWYQAGAFYPFFRAHAHIDTKRREPWLFGEEYTSIIREAIRLRYAL 324 (339)
T ss_pred HHHHHHhhcCceeecCCCCCCCCCCCeecChHHHHHHHHHHHHHHHH
Confidence 99999999999999999877778999999999999999999877654
No 4
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=100.00 E-value=4.1e-74 Score=529.16 Aligned_cols=256 Identities=40% Similarity=0.804 Sum_probs=242.5
Q ss_pred cchhhccc-CcccccCCCCCCChHHHHHHHHHCCCeEEEeeCCeeccCCCccccccccccceeeecCCCCceeeeecCCc
Q 022976 5 WILTTWMD-FVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGP 83 (289)
Q Consensus 5 ~~~~~w~d-~~~f~~d~~~FPdp~~~i~~L~~~g~k~~~~v~P~i~~~~~~~~y~~~~~~~~~v~~~~g~~~~~~~w~g~ 83 (289)
|||..|++ +++|+||+++||||++|+++||++|+|++++++|+|..++.+..|.++.++++||++.+|+++++.+|||.
T Consensus 44 ~lD~~~~~~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~ 123 (317)
T cd06600 44 FLDIHYMDSYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDKGKFCEIESGELFVGKMWPGT 123 (317)
T ss_pred EEChhhhCCCCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHCCEEEECCCCCeEEEeecCCC
Confidence 67778888 89999999999999999999999999999999999998777788999999999999999999999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHH-hcCccEEEecCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHH
Q 022976 84 CVFPDYTQSKVRSWWGSLVKDFI-YNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARS 162 (289)
Q Consensus 84 ~~~~Dftnp~a~~ww~~~~~~~~-~~Gvdg~w~D~~E~~~~~~~~~~lp~~~~~~~~~~~g~~~~~~~~hN~y~~~~~~a 162 (289)
+++||||||+|++||.+++++++ ++||||||+|+|||+.| .++||+|+++++++
T Consensus 124 ~~~~Dftnp~a~~ww~~~~~~~~~~~gvdg~w~D~~Ep~~~-------------------------~~~hn~y~~~~~~a 178 (317)
T cd06600 124 TVYPDFTNPDTREWWAGLFSEWLNSQGVDGIWLDMNEPSDF-------------------------EKVHNLYGLYEAMA 178 (317)
T ss_pred ccccCCCChHHHHHHHHHHHHHhhcCCCceEEeeCCCCccH-------------------------HHhcchhhHHHHHH
Confidence 99999999999999999999887 89999999999998642 36899999999999
Q ss_pred HHHHHHhhcCCCCcEEEEcccccCCCccceeeCCCCCCCchHHHHHHHHHHHhhccCCCccccCCCCCCCCCChhHHHHH
Q 022976 163 TYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRW 242 (289)
Q Consensus 163 ~~~~~~~~~~~~r~~~~sRs~~~G~qry~~~W~GD~~s~W~~L~~~I~~~l~~~l~G~p~~g~DIgGf~g~~~~EL~~RW 242 (289)
+++++++..+++|+|+++||+++|+|||+++|+||+.|+|++|+.+|+.+|++||+|+||+|+|||||.+++++|||+||
T Consensus 179 ~~~~~~~~~~~~r~~~~sRs~~~G~qry~~~W~GD~~s~W~~L~~~i~~~l~~gl~G~p~~g~DiGGf~~~~~~EL~~RW 258 (317)
T cd06600 179 TAEGFRTSHPRNRIFILTRSGFAGSQKYAAIWTGDNTASWDDLKLSIPLVLGLSISGIPFVGCDIGGFQGDNSMELLVRW 258 (317)
T ss_pred HHHHHHHhcCCCCceEEEeccccccCCccceECCcccccHHHHHHHHHHHHHHHhcCCCccCcccCCCCCCCCHHHHHHH
Confidence 99999988889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcccccccCCCCCCCCCccccChhhHHHHHHHHHHHhh
Q 022976 243 MGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAFFW 285 (289)
Q Consensus 243 ~Q~g~f~P~~R~h~~~~~~~~ePw~~~~~~~~~~r~~i~~~~~ 285 (289)
+|+|||+|+||+|+.....++|||.|++++.+++|++++-..+
T Consensus 259 ~Q~gaf~P~~R~H~~~~~~~~ePw~~~~~~~~~~r~~~~lRy~ 301 (317)
T cd06600 259 YQLGAFFPFYRSHKATDGKDTEPVFFPDYYKEKVREIVELRYK 301 (317)
T ss_pred HHHhhcCceeeccCCCCCCCCCCeecCcHHHHHHHHHHHHHHH
Confidence 9999999999999987667899999999999999999986654
No 5
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=100.00 E-value=1.7e-72 Score=518.66 Aligned_cols=260 Identities=32% Similarity=0.592 Sum_probs=236.4
Q ss_pred cchhhccc-------CcccccCCCCCCChHHHHHHHHHCCCeEEEeeCCeeccCCCccccccccccceeee-cCCCCcee
Q 022976 5 WILTTWMD-------FVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQ-KADGTPFI 76 (289)
Q Consensus 5 ~~~~~w~d-------~~~f~~d~~~FPdp~~~i~~L~~~g~k~~~~v~P~i~~~~~~~~y~~~~~~~~~v~-~~~g~~~~ 76 (289)
|||..|++ +++|+||+++||||++|+++||++|+|++++++|+|..++ +.|+++.++|+|++ +.+|++++
T Consensus 44 ~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~--~~y~e~~~~g~l~~~~~~~~~~~ 121 (317)
T cd06598 44 ILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNS--KNWGEAVKAGALLKKDQGGVPTL 121 (317)
T ss_pred EEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCc--hhHHHHHhCCCEEEECCCCCEee
Confidence 66777775 5699999999999999999999999999999999999865 47999999999554 45688999
Q ss_pred eeecCCcccCCCCCCHHHHHHHHHHHHHHHhcCccEEEecCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccchhhHHH
Q 022976 77 GEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYG 156 (289)
Q Consensus 77 ~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~lp~~~~~~~~~~~g~~~~~~~~hN~y~ 156 (289)
+.+|+|.+++||||||+|++||.++++++++.||||||+|+|||+.+ |.+..+.+ + .+.++||+|+
T Consensus 122 ~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~Gvdg~w~D~~Ep~~~-------~~~~~~~~-----g--~~~~~hN~y~ 187 (317)
T cd06598 122 FDFWFGNTGLIDWFDPAAQAWFHDNYKKLIDQGVTGWWGDLGEPEVH-------PPDMCHHK-----G--KAAEVHNIYG 187 (317)
T ss_pred eeccCCCccccCCCCHHHHHHHHHHHHHhhhCCccEEEecCCCcccc-------CCccccCC-----C--cHhHHhhHHH
Confidence 99999999999999999999999999999999999999999999874 33333321 1 4678999999
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEcccccCCCccc-eeeCCCCCCCchHHHHHHHHHHHhhccCCCccccCCCCCCCC--
Q 022976 157 MLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYA-ATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGN-- 233 (289)
Q Consensus 157 ~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~qry~-~~W~GD~~s~W~~L~~~I~~~l~~~l~G~p~~g~DIgGf~g~-- 233 (289)
+++++++|+++++..+++|||+++||+++|+|||+ .+|+||+.++|++|+.+|+++|++|++|+|+||+|||||.++
T Consensus 188 ~~~~~~~~e~~~~~~~~~r~~~~~Rs~~~Gsqry~~~~WsGD~~s~W~~L~~~i~~~l~~~l~G~~~~g~DIGGf~~~~~ 267 (317)
T cd06598 188 HLWAKSIYEGYQQNYPNERPFILMRAGFAGSQRYGVIPWSGDVGRTWDGLKSQPNAALQMSMSGIDYYHSDIGGFAGGDE 267 (317)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEecCcCccccCcCCccCCCCcCCHHHHHHHHHHHHhhhccCCcccCCCcCCcCCCCC
Confidence 99999999999988888999999999999999998 589999999999999999999999999999999999999997
Q ss_pred CChhHHHHHHHhhhhcccccccCCCCCCCCCccccChhhHHHHHHHHH
Q 022976 234 ATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVII 281 (289)
Q Consensus 234 ~~~EL~~RW~Q~g~f~P~~R~h~~~~~~~~ePw~~~~~~~~~~r~~i~ 281 (289)
+++|||+||+|+|+|+|+||+|+..+ .++|||.|++++++++|++|+
T Consensus 268 ~~~EL~~RW~q~g~f~P~~R~H~~~~-~~~ePw~~~~~~~~~~r~~~~ 314 (317)
T cd06598 268 LDPELYTRWFQYGAFDPPFRPHAQNA-IPPEPVFYSIGTKNINRENIR 314 (317)
T ss_pred CCHHHHHHHHHhccCCcccccCCCCC-CCCCCCcCChHHHHHHHHHHH
Confidence 89999999999999999999999875 468999999999999999986
No 6
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=100.00 E-value=1.7e-71 Score=515.70 Aligned_cols=256 Identities=41% Similarity=0.790 Sum_probs=240.7
Q ss_pred cchhhccc-CcccccCCCCCCCh--HHHHHHHHHCCCeEEEeeCCeeccC---CCccccccccccceeeecCCCCceeee
Q 022976 5 WILTTWMD-FVVSLLTRHRFPDP--KSLAADLHLNGFKAIWMLDPGIKHE---DGYFVYDSGSKIDVWIQKADGTPFIGE 78 (289)
Q Consensus 5 ~~~~~w~d-~~~f~~d~~~FPdp--~~~i~~L~~~g~k~~~~v~P~i~~~---~~~~~y~~~~~~~~~v~~~~g~~~~~~ 78 (289)
|||..|++ +++|+||+++|||| ++|+++||++|+|++++++|+|..+ +.|.+|+++.++++||++.+|+++++.
T Consensus 44 ~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~ 123 (339)
T cd06602 44 WNDIDYMDRRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGK 123 (339)
T ss_pred EECcccccCccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEE
Confidence 67778887 99999999999999 9999999999999999999999986 468899999999999999999999999
Q ss_pred ecCCcccCCCCCCHHHHHHHHHHHHHHHh-cCccEEEecCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHH
Q 022976 79 VWPGPCVFPDYTQSKVRSWWGSLVKDFIY-NGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGM 157 (289)
Q Consensus 79 ~w~g~~~~~Dftnp~a~~ww~~~~~~~~~-~Gvdg~w~D~~E~~~~~~~~~~lp~~~~~~~~~~~g~~~~~~~~hN~y~~ 157 (289)
+|||.+++||||||+|++||.++++++++ +||||||+|++||..+ .++||+|++
T Consensus 124 ~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~Ep~~~-------------------------~~~hN~y~~ 178 (339)
T cd06602 124 VWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPFDGLWIDMNEPSNF-------------------------YDVHNLYGL 178 (339)
T ss_pred eCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCCcEEEecCCCCchH-------------------------hhhcchhhH
Confidence 99999999999999999999999998774 7999999999998642 368999999
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEEcccccCCCccceeeCCCCCCCchHHHHHHHHHHHhhccCCCccccCCCCCCCCCChh
Q 022976 158 LMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPR 237 (289)
Q Consensus 158 ~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~qry~~~W~GD~~s~W~~L~~~I~~~l~~~l~G~p~~g~DIgGf~g~~~~E 237 (289)
++++++++++++. +++|+|++|||+++|+|||+++|+||+.|+|++|+.+|+++|++|+||+||||+|||||.+++++|
T Consensus 179 ~~~~~~~~~~~~~-~~~r~~~~sRs~~~G~qry~~~w~GD~~s~W~~L~~~i~~~l~~~~sG~~~~~~DigGf~g~~~~E 257 (339)
T cd06602 179 SEAIATYKALQSI-PGKRPFVISRSTFPGSGRYAGHWLGDNASTWEDLRYSIIGMLEFNLFGIPMVGADICGFNGDTTEE 257 (339)
T ss_pred HHHHHHHHHHHhc-CCCCCEEEEecCcccccccceeECCCccCCHHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCCHH
Confidence 9999999999987 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcccccccCCCCCCCCCccccChhhHHHHHHHHHHHhhh
Q 022976 238 LFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAFFWF 286 (289)
Q Consensus 238 L~~RW~Q~g~f~P~~R~h~~~~~~~~ePw~~~~~~~~~~r~~i~~~~~~ 286 (289)
||+||+|+|+|+|+||+|+..+...+|||.|++++.+++|++|+-..++
T Consensus 258 L~~RW~Q~~~f~P~~r~H~~~~~~~~ePw~~~~~~~~~~r~~~~lRy~L 306 (339)
T cd06602 258 LCARWMQLGAFYPFSRNHNDIGAIPQEPYVWGPSVADAARKALNIRYSL 306 (339)
T ss_pred HHHHHHHHHhhCceeeccCCCCCCCcCCccCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999877778999999999999999999876543
No 7
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=100.00 E-value=1.2e-70 Score=504.92 Aligned_cols=258 Identities=29% Similarity=0.543 Sum_probs=239.2
Q ss_pred cchhhccc-Cc--ccccCCCCCCChHHHHHHHHHCCCeEEEeeCCeeccCCCccccccccccceeeecCCCCceeeeecC
Q 022976 5 WILTTWMD-FV--VSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWP 81 (289)
Q Consensus 5 ~~~~~w~d-~~--~f~~d~~~FPdp~~~i~~L~~~g~k~~~~v~P~i~~~~~~~~y~~~~~~~~~v~~~~g~~~~~~~w~ 81 (289)
|||..|++ ++ +|+||+++||||++|+++||++|+|+++|++|+|..++. +|++++++++||++.+|+++.+.+|+
T Consensus 44 ~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~--~~~e~~~~g~~v~~~~g~~~~~~~w~ 121 (308)
T cd06593 44 HLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSP--LFKEAAEKGYLVKKPDGSVWQWDLWQ 121 (308)
T ss_pred EEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCCch--hHHHHHHCCeEEECCCCCeeeecccC
Confidence 78888888 44 999999999999999999999999999999999988654 79999999999999999999999999
Q ss_pred CcccCCCCCCHHHHHHHHHHHHHHHhcCccEEEecCCCCcccCCCCCCCCCCCC-CCCCCCCCCcccccchhhHHHHHHH
Q 022976 82 GPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMPESNI-HRGDDEIGGCQNHSYYHNVYGMLMA 160 (289)
Q Consensus 82 g~~~~~Dftnp~a~~ww~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~lp~~~~-~~~~~~~g~~~~~~~~hN~y~~~~~ 160 (289)
|.+++||||||+|++||.++++++++.||||||+|++|+ +|.+.. +.| ..+.++||+|+++++
T Consensus 122 g~~~~~Dftnp~a~~w~~~~~~~~~~~Gid~~~~D~~e~---------~p~~~~~~~g-------~~~~~~hn~y~~~~~ 185 (308)
T cd06593 122 PGMGIIDFTNPDACKWYKDKLKPLLDMGVDCFKTDFGER---------IPTDVVYYDG-------SDGEKMHNYYALLYN 185 (308)
T ss_pred CCcccccCCCHHHHHHHHHHHHHHHHhCCcEEecCCCCC---------CCccccccCC-------CCcceeeeHHHHHHH
Confidence 999999999999999999999999999999999999997 344433 222 146789999999999
Q ss_pred HHHHHHHHhhcCCCCcEEEEcccccCCCccceeeCCCCCCCchHHHHHHHHHHHhhccCCCccccCCCCCCCCCChhHHH
Q 022976 161 RSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFG 240 (289)
Q Consensus 161 ~a~~~~~~~~~~~~r~~~~sRs~~~G~qry~~~W~GD~~s~W~~L~~~I~~~l~~~l~G~p~~g~DIgGf~g~~~~EL~~ 240 (289)
++++|++++..+++|+|+++||+++|+|||+++|+||+.++|++|+.+|+.+|++||+|+|++|+|||||.+++++|||+
T Consensus 186 ~~~~~~~~~~~~~~r~~~~~Rs~~~Gsqry~~~w~GD~~s~w~~L~~~i~~~l~~~l~G~~~~g~DigGf~~~~~~EL~~ 265 (308)
T cd06593 186 KAVYEATKEVKGEGEAVVWARSAWAGSQKYPVHWGGDCESTFEGMAESLRGGLSLGLSGFGFWSHDIGGFEGTPPPDLYK 265 (308)
T ss_pred HHHHHHHHHhcCCCCeEEEEcCCccccccCCCEECCCcccCHHHHHHHHHHHHhccccCCceecCccCCcCCCCCHHHHH
Confidence 99999999988788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcccccccCCCCCCCCCccccChhhHHHHHHHHHHH
Q 022976 241 RWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAF 283 (289)
Q Consensus 241 RW~Q~g~f~P~~R~h~~~~~~~~ePw~~~~~~~~~~r~~i~~~ 283 (289)
||+|+|||+|+||+|+.. .++||.|++++++++|++|+--
T Consensus 266 RW~q~gaf~P~~r~h~~~---~~~Pw~~~~~~~~~~r~~~~lR 305 (308)
T cd06593 266 RWAQFGLLSSHSRLHGSG---YREPWEYGEEAVDVVRKFAKLK 305 (308)
T ss_pred HHHHhCcCCcccccCCCC---CCCCcccChHHHHHHHHHHHHH
Confidence 999999999999999874 7999999999999999998754
No 8
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=100.00 E-value=6e-70 Score=501.14 Aligned_cols=245 Identities=26% Similarity=0.478 Sum_probs=223.0
Q ss_pred ccccCCCCCCChHHHHHHHHHCCCeEEEeeCCeeccCCCccccccccccceeeecCCCCceeeeecCCcccCCCCCCHHH
Q 022976 15 VSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKV 94 (289)
Q Consensus 15 ~f~~d~~~FPdp~~~i~~L~~~g~k~~~~v~P~i~~~~~~~~y~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a 94 (289)
+|+||+++||||++|+++||++|+|++++++|+|+.++.. .|+++.++++||++++|+++++.+|||.+++||||||+|
T Consensus 62 ~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~i~P~v~~~~~~-~y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a 140 (317)
T cd06594 62 NWEWDPERYPGLDELIEELKARGIRVLTYINPYLADDGPL-YYEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAA 140 (317)
T ss_pred eeEEChhhCCCHHHHHHHHHHCCCEEEEEecCceecCCch-hHHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHH
Confidence 6999999999999999999999999999999999986542 279999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HhcCccEEEecCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHhhcCC
Q 022976 95 RSWWGSLVKDF-IYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKD 173 (289)
Q Consensus 95 ~~ww~~~~~~~-~~~Gvdg~w~D~~E~~~~~~~~~~lp~~~~~~~~~~~g~~~~~~~~hN~y~~~~~~a~~~~~~~~~~~ 173 (289)
++||.++++++ .++||||||+|+||+. |.+..+.+ | .++.++||+|++++++++++++++..++
T Consensus 141 ~~ww~~~~~~~~~~~Gvdg~w~D~~E~~---------p~d~~~~~-----g-~~~~~~hN~y~~~~~~~~~~~~~~~~~~ 205 (317)
T cd06594 141 RDWFKQVIKEMLLDLGLSGWMADFGEYL---------PFDAVLHS-----G-EDAATMHNRYPELWAKLNREAVEEAGKT 205 (317)
T ss_pred HHHHHHHHHHHhhhcCCcEEEecCCCCC---------CCcceecC-----C-CCHHHHhhHHHHHHHHHHHHHHHHhccC
Confidence 99999999877 5899999999999963 33333321 1 1468999999999999999999988788
Q ss_pred CCcEEEEcccccCCCccc-eeeCCCCCCCch---HHHHHHHHHHHhhccCCCccccCCCCCCC----CCChhHHHHHHHh
Q 022976 174 KRPFVLTRAGFIGSQRYA-ATWTGDNVSNWE---HLHMSISMVLQLGLSGQPFSGPDIGGFDG----NATPRLFGRWMGI 245 (289)
Q Consensus 174 ~r~~~~sRs~~~G~qry~-~~W~GD~~s~W~---~L~~~I~~~l~~~l~G~p~~g~DIgGf~g----~~~~EL~~RW~Q~ 245 (289)
+|+|++|||+|+|+|||+ .+|+||+.|+|+ +|+.+|+++|++||+|+||+|+|||||.+ .+++|||+||+|+
T Consensus 206 ~r~fvltRs~~~Gsqry~~~~WsGD~~s~W~~~~~L~~~i~~~L~~~lsG~~~~g~DIGGF~~~~~~~~~~EL~~RW~Q~ 285 (317)
T cd06594 206 GDILFFMRSGFTGSQKYSTLFWAGDQMVSWDAHDGLKSVVPGALSSGLSGYALHHSDIGGYTSLNGYVRTEELLLRWAEM 285 (317)
T ss_pred CCeEEEEcccccccccccccccCCCCCCCCcCcccHHHHHHHHhhccccCCCcccCccCCCcCCCCCCCCHHHHHHHHHH
Confidence 999999999999999998 489999999998 79999999999999999999999999975 4899999999999
Q ss_pred hhhcccccccCCCCCCCCCccccChhhHHH
Q 022976 246 GAMFPFCRGHTESDAIDHEPWSFGEEVLFC 275 (289)
Q Consensus 246 g~f~P~~R~h~~~~~~~~ePw~~~~~~~~~ 275 (289)
|||+|+||+|+...+..++||.+++++.++
T Consensus 286 gaF~P~~R~H~~~~~~~~~~~~~~~~~~~~ 315 (317)
T cd06594 286 AAFTPVMRTHEGNRPDDNWQFYSDDETLRH 315 (317)
T ss_pred hccccceecCCCCCCCCCcccccChHHHHh
Confidence 999999999998887889999999887765
No 9
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=100.00 E-value=1.3e-69 Score=499.77 Aligned_cols=260 Identities=30% Similarity=0.462 Sum_probs=227.4
Q ss_pred cchhhccc-Cc--ccccCCCCCCChHHHHHHHHHCCCeEEEeeCCeeccCCCccccccccccceeeecCCCCceeeeecC
Q 022976 5 WILTTWMD-FV--VSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWP 81 (289)
Q Consensus 5 ~~~~~w~d-~~--~f~~d~~~FPdp~~~i~~L~~~g~k~~~~v~P~i~~~~~~~~y~~~~~~~~~v~~~~g~~~~~~~w~ 81 (289)
|||-.|++ ++ +|+||+++||||++|+++||++|+|++++++|+|+.++ ..|++++++++||++.+|+++. .+|+
T Consensus 44 ~lD~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~~~~--~~y~e~~~~g~~v~~~~g~~~~-~~w~ 120 (319)
T cd06591 44 VQDWFYWPKQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFGPET--ENYKEMDEKGYLIKTDRGPRVT-MQFG 120 (319)
T ss_pred EEechhhcCCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcCCCC--hhHHHHHHCCEEEEcCCCCeee-eeCC
Confidence 55655665 55 99999999999999999999999999999999998754 5799999999999999988776 8999
Q ss_pred CcccCCCCCCHHHHHHHHHHHHH-HHhcCccEEEecCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHH
Q 022976 82 GPCVFPDYTQSKVRSWWGSLVKD-FIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMA 160 (289)
Q Consensus 82 g~~~~~Dftnp~a~~ww~~~~~~-~~~~Gvdg~w~D~~E~~~~~~~~~~lp~~~~~~~~~~~g~~~~~~~~hN~y~~~~~ 160 (289)
|.+++||||||+|++||.+++++ +.++||||||+|++||+.++.... .+......| ++.++||+|+++++
T Consensus 121 g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~Ep~~~~~~~~------~~~~~~~~~---~~~~~hN~y~~~~~ 191 (319)
T cd06591 121 GNTRFYDATNPEAREYYWKQLKKNYYDKGVDAWWLDAAEPEYSVYDFG------LDNYRYHLG---PGLEVGNAYPLMHA 191 (319)
T ss_pred CCccccCCCCHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCccCCccc------ccCcccCCC---CchhhhhhhHHHHH
Confidence 99999999999999999888765 568999999999999987642210 011111111 46789999999999
Q ss_pred HHHHHHHHhhcCCCCcEEEEcccccCCCccce-eeCCCCCCCchHHHHHHHHHHHhhccCCCccccCCCCCCCCCC----
Q 022976 161 RSTYEGMKLADKDKRPFVLTRAGFIGSQRYAA-TWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNAT---- 235 (289)
Q Consensus 161 ~a~~~~~~~~~~~~r~~~~sRs~~~G~qry~~-~W~GD~~s~W~~L~~~I~~~l~~~l~G~p~~g~DIgGf~g~~~---- 235 (289)
+++++++++..+++|||+++||+++|+|||++ +|+||+.|+|++|+.+|+.+|++||||+|++|+|||||.++++
T Consensus 192 ~~~~e~~~~~~~~~r~f~~sRs~~~Gsqry~~~~W~GD~~s~w~~L~~~i~~~l~~glsG~~~~g~DiGGF~~~~~~~~~ 271 (319)
T cd06591 192 KGIYEGQRAAGDEKRVVILTRSAWAGSQRYGALVWSGDIDSSWETLRRQIAAGLNMGLSGIPWWTTDIGGFFVGNPPAGL 271 (319)
T ss_pred HHHHHHHHHhCCCCCceEEEeccccccccccCceeCCCccccHHHHHHHHHHHHHHhhcCCccccCCcCCcCCCCccccc
Confidence 99999999877789999999999999999985 9999999999999999999999999999999999999998755
Q ss_pred -----hhHHHHHHHhhhhcccccccCCCCC-CCCCccccChhhHHHH
Q 022976 236 -----PRLFGRWMGIGAMFPFCRGHTESDA-IDHEPWSFGEEVLFCS 276 (289)
Q Consensus 236 -----~EL~~RW~Q~g~f~P~~R~h~~~~~-~~~ePw~~~~~~~~~~ 276 (289)
+|||+||+|+|+|+|+||+|+.... ..+|||.|++++++++
T Consensus 272 ~~~~~~EL~~RW~q~gaf~P~~R~H~~~~~~~~~ePw~~g~e~~~~~ 318 (319)
T cd06591 272 DDPEYRELYVRWFQFGAFCPVMRSHGTREPREINEFWSYGEEVYDIL 318 (319)
T ss_pred cCCccHHHHHHHHHHhcCccccccCCCCCCCCCCcCcCCChHHHHhh
Confidence 8999999999999999999998654 3579999999999875
No 10
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=100.00 E-value=1.5e-69 Score=499.72 Aligned_cols=251 Identities=31% Similarity=0.595 Sum_probs=218.2
Q ss_pred cchhhccc-CcccccCCCCCCChHHHHHHHHHCCCeEEEeeCCeeccCCCccccccccccceeeecCCCCceeeeecCCc
Q 022976 5 WILTTWMD-FVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGP 83 (289)
Q Consensus 5 ~~~~~w~d-~~~f~~d~~~FPdp~~~i~~L~~~g~k~~~~v~P~i~~~~~~~~y~~~~~~~~~v~~~~g~~~~~~~w~g~ 83 (289)
|||-.||+ +++|+||+++||||++|+++||++|+|++++++|+|.. +.+|++.
T Consensus 44 ~lDidy~~~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~~--------------------------g~~~~~~ 97 (332)
T cd06601 44 HVDVDFQDNYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVISY--------------------------GGGLGSP 97 (332)
T ss_pred EEcCchhcCCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCceec--------------------------CccCCCC
Confidence 67777777 99999999999999999999999999999999999881 2456777
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHhcCccEEEecCCCCcccCCCC--CCCCCCCCCCCCC-C-CCCcccccchhhHHHHHH
Q 022976 84 CVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVT--KTMPESNIHRGDD-E-IGGCQNHSYYHNVYGMLM 159 (289)
Q Consensus 84 ~~~~Dftnp~a~~ww~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~--~~lp~~~~~~~~~-~-~g~~~~~~~~hN~y~~~~ 159 (289)
+++||||||+|++||.++++.+++.|||++|+|||||++|+... .++|.+..+.... . ......|.++||+|++++
T Consensus 98 ~~~pDftnp~ar~wW~~~~~~l~~~Gv~~~W~DmnEp~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~hN~Y~~~~ 177 (332)
T cd06601 98 GLYPDLGRPDVREWWGNQYKYLFDIGLEFVWQDMTTPAIMPSYGDMKGFPPRLLVTDDSYENNVKRKPAIELWNLYSYNL 177 (332)
T ss_pred ceeeCCCCHHHHHHHHHHHHHHHhCCCceeecCCCCcccccCCCccCCCCCcccccCCccccccCCchHHHHhhhhHHHH
Confidence 89999999999999999999999999999999999999886532 3566655443211 0 001125789999999999
Q ss_pred HHHHHHHHHhhc--CCCCcEEEEcccccCCCccceeeCCCCCCCchHHHHHHHHHHHhhccCCCccccCCCCCCCC----
Q 022976 160 ARSTYEGMKLAD--KDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGN---- 233 (289)
Q Consensus 160 ~~a~~~~~~~~~--~~~r~~~~sRs~~~G~qry~~~W~GD~~s~W~~L~~~I~~~l~~~l~G~p~~g~DIgGf~g~---- 233 (289)
++|+++++++.. +++||||+|||+|+|+|||+++|+||+.|+|+.|+.+|+++|++||||+||||+|||||.++
T Consensus 178 ~~a~~e~~~~~~~~~~~RpfiltRS~~aGsqrY~~~WsGDn~stW~~L~~si~~~L~~~lsGip~~g~DIGGF~g~~~~~ 257 (332)
T cd06601 178 HKATWHGLNNLNARKNKRNFIIGRGSYAGMQRFAGLWTGDNSSSWDFLQINIAQVLNLGMSGLPIAGSDIGGFTSYDGEN 257 (332)
T ss_pred HHHHHHHHHHhhcCCCCCcEEEEecCcCccCCcCceeCCCcccCHHHHHHHHHHHHHhhhcCCCccCCccCCcCCCCccc
Confidence 999999998764 78999999999999999999999999999999999999999999999999999999999986
Q ss_pred ------CChhHHHHHHHhhhhcccccccCCCC--CCCCCc----------------cccChhhHHHHHHHHH
Q 022976 234 ------ATPRLFGRWMGIGAMFPFCRGHTESD--AIDHEP----------------WSFGEEVLFCSSIVII 281 (289)
Q Consensus 234 ------~~~EL~~RW~Q~g~f~P~~R~h~~~~--~~~~eP----------------w~~~~~~~~~~r~~i~ 281 (289)
+++|||+||+|+|+|+|+||+|+... +..+|| |.+.+++++++|++|+
T Consensus 258 ~~~~~~~~~EL~~RW~Q~GaF~P~~R~H~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~ 329 (332)
T cd06601 258 SIQRTWCNPELLIRWYQAGFLLPWFRNHYDRKIRQKFQEPAKYFQEPYAHLIDYEQLYLYENVPEICRKYVE 329 (332)
T ss_pred ccccCCCCHHHHHHHHHHhcCCceeccCCCCccCcccCCcccccccccccccccccccccHHHHHHHHHHHH
Confidence 57999999999999999999999754 467788 3444999999999986
No 11
>KOG1066 consensus Glucosidase II catalytic (alpha) subunit and related enzymes, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-71 Score=525.93 Aligned_cols=271 Identities=41% Similarity=0.782 Sum_probs=254.6
Q ss_pred chhhccc------CcccccCCCCCCChHHHHHHHHHCCCeEEEeeCCeeccCCCccccccccccceeeecCCCCceeeee
Q 022976 6 ILTTWMD------FVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEV 79 (289)
Q Consensus 6 ~~~~w~d------~~~f~~d~~~FPdp~~~i~~L~~~g~k~~~~v~P~i~~~~~~~~y~~~~~~~~~v~~~~g~~~~~~~ 79 (289)
.|.||+| .+.||||+.+||+|++|+++|.++|.|+|++|+|+|+.+++|.+++++++.||+||+.+|+.|.|.|
T Consensus 388 ~DviWLDIEhtdgKrYFTWDk~~FP~P~~Ml~kLa~kgRklV~IvDPHIKkD~~Y~v~ke~~~~gy~VKd~~G~DyeG~C 467 (915)
T KOG1066|consen 388 YDVIWLDIEHTDGKRYFTWDKHKFPNPKDMLKKLASKGRKLVTIVDPHIKKDDGYFVHKEAKDKGYYVKDRDGSDYEGWC 467 (915)
T ss_pred cceEEEeeeecCCceeEeeccccCCCHHHHHHHHHhcCCceEEEeCcccccCCCeEEhHHhhhCCeEEEecCCCcccccc
Confidence 3678888 7789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccCCCCCCHHHHHHHHHHHHHHHh-cC---ccEEEecCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccchhhHH
Q 022976 80 WPGPCVFPDYTQSKVRSWWGSLVKDFIY-NG---VDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVY 155 (289)
Q Consensus 80 w~g~~~~~Dftnp~a~~ww~~~~~~~~~-~G---vdg~w~D~~E~~~~~~~~~~lp~~~~~~~~~~~g~~~~~~~~hN~y 155 (289)
|||.+.+|||.||++|+||+++.. +-+ .| --.+|+|||||++|...+.|+|.+++|.|. ..|+++||+|
T Consensus 468 WPG~S~yiDf~nP~~r~wW~~~fa-fd~y~g~t~nl~iWNDMNEPSVFnGPEiTm~kDaiHyGg------~EHRdVHNiY 540 (915)
T KOG1066|consen 468 WPGSSSYIDFINPEARKWWKSQFA-FDRYEGSTPNLFIWNDMNEPSVFNGPEITMPKDAIHYGG------WEHRDVHNIY 540 (915)
T ss_pred cCCCcccccccCHHHHHHHhhhcc-cccccCCCCceEEeccCCCccccCCCccccchhhhhcCC------eeechhhhhh
Confidence 999999999999999999999975 222 23 236899999999999999999999999873 3699999999
Q ss_pred HHHHHHHHHHHHHhhcC-CCCcEEEEcccccCCCccceeeCCCCCCCchHHHHHHHHHHHhhccCCCccccCCCCCCCCC
Q 022976 156 GMLMARSTYEGMKLADK-DKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNA 234 (289)
Q Consensus 156 ~~~~~~a~~~~~~~~~~-~~r~~~~sRs~~~G~qry~~~W~GD~~s~W~~L~~~I~~~l~~~l~G~p~~g~DIgGf~g~~ 234 (289)
|++...|+++||+++.+ ..|||++|||.|+|+||++++|+|||..+|++||.+|+++|++|++|+||.|.|||||.|+|
T Consensus 541 G~~~h~aT~dGl~~R~~g~~RPFvLsRafFaGsQR~aAiWTGDN~A~W~HLkiSiPM~Lsl~iaG~~F~GADVgGFFgNP 620 (915)
T KOG1066|consen 541 GLMVHMATFDGLIARSGGKERPFVLSRAFFAGSQRTAAIWTGDNTADWDHLKISIPMVLSLGIAGMPFVGADVGGFFGNP 620 (915)
T ss_pred ceeeeehhhhhhhhhcCCCcCceEEEeccccCccceeeeeccCCccchhhheeecceeEecccccceecccccccccCCC
Confidence 99999999999998754 58999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHhhhhcccccccCCCCCCCCCccccChhhHHHHHHHHHHH
Q 022976 235 TPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAF 283 (289)
Q Consensus 235 ~~EL~~RW~Q~g~f~P~~R~h~~~~~~~~ePw~~~~~~~~~~r~~i~~~ 283 (289)
++||++||+|.|+|.|+||.|....+..||||.|++...+++|.+|++=
T Consensus 621 d~ELlvRWYQ~gaf~PFFRaHAHiDTkRREPWLf~e~~~~iiRdal~~R 669 (915)
T KOG1066|consen 621 DPELLVRWYQTGAFQPFFRAHAHIDTKRREPWLFPEQTTQIIRDALRTR 669 (915)
T ss_pred CHHHHHHHHHhcccchhhhhhccccccccCccccCcchHHHHHHHHHHH
Confidence 9999999999999999999999988889999999999999999999863
No 12
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=100.00 E-value=8.9e-70 Score=500.55 Aligned_cols=259 Identities=33% Similarity=0.603 Sum_probs=225.9
Q ss_pred cchhhccc-----CcccccCCCCCCChHHHHHHHHHCCCeEEEeeCCeeccCCCccccccccccceeeecCCCC-ceeee
Q 022976 5 WILTTWMD-----FVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGT-PFIGE 78 (289)
Q Consensus 5 ~~~~~w~d-----~~~f~~d~~~FPdp~~~i~~L~~~g~k~~~~v~P~i~~~~~~~~y~~~~~~~~~v~~~~g~-~~~~~ 78 (289)
|||..|++ +++|+||+++||||++|+++||++|+|++++++|+|..++ +.|+++.++++||++.+|. ++++.
T Consensus 49 ~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~~~--~~y~e~~~~g~~v~~~~g~~~~~~~ 126 (317)
T cd06599 49 HLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLLQDH--PRYKELKEAGAFIKPPDGREPSIGQ 126 (317)
T ss_pred EEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCcccCCC--HHHHHHHHCCcEEEcCCCCCcceec
Confidence 56666775 4579999999999999999999999999999999998764 4799999999999998764 68899
Q ss_pred ecCCcccCCCCCCHHHHHHHHHHH-HHHHhcCccEEEecCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHH
Q 022976 79 VWPGPCVFPDYTQSKVRSWWGSLV-KDFIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGM 157 (289)
Q Consensus 79 ~w~g~~~~~Dftnp~a~~ww~~~~-~~~~~~Gvdg~w~D~~E~~~~~~~~~~lp~~~~~~~~~~~g~~~~~~~~hN~y~~ 157 (289)
+|+|.+++||||||+|++||.+++ +.+.+.||||||+|++||+.+ +.+..+...+. ...+.++||+|++
T Consensus 127 ~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E~~~~-------~~~~~~~~~g~---~~~~~~~~n~y~~ 196 (317)
T cd06599 127 FWGGVGSFVDFTNPEGREWWKEGVKEALLDLGIDSTWNDNNEYEIW-------DDDAVCDGFGK---PGTIGELRPVQPN 196 (317)
T ss_pred ccCCCeEeecCCChHHHHHHHHHHHHHHhcCCCcEEEecCCCCccC-------CCcceecCCCC---ccchhhcccchHH
Confidence 999999999999999999999999 456689999999999998753 22222221111 1134568999999
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEEcccccCCCccceeeCCCCCCCchHHHHHHHHHHHhhccCCCccccCCCCCCCC-CCh
Q 022976 158 LMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGN-ATP 236 (289)
Q Consensus 158 ~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~qry~~~W~GD~~s~W~~L~~~I~~~l~~~l~G~p~~g~DIgGf~g~-~~~ 236 (289)
++++|+|+++++..+++|||+++||+++|+|||+++|+||+.++|++|+.+|+.+|++||+|+||||+|||||.++ +++
T Consensus 197 l~~~a~~~~~~~~~~~~r~f~ltRs~~~G~qry~~~WsGD~~s~W~~L~~~i~~~L~~glsG~~~~g~DIGGF~~~~~~~ 276 (317)
T cd06599 197 LMARASHEAQAEHYPNRRPYIVSRSGFAGIQRYAQTWSGDNRTSWKTLRYNIAMGLGMGLSGVANIGHDIGGFAGPAPEP 276 (317)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEcCCcccccCCcCeeCCCcccCHHHHHHHHHHHHhhhccCCcccccccCccCCCCCCH
Confidence 9999999999988889999999999999999999999999999999999999999999999999999999999986 799
Q ss_pred hHHHHHHHhhhhcccccccCCCCC-CCCCccccChhhHHHH
Q 022976 237 RLFGRWMGIGAMFPFCRGHTESDA-IDHEPWSFGEEVLFCS 276 (289)
Q Consensus 237 EL~~RW~Q~g~f~P~~R~h~~~~~-~~~ePw~~~~~~~~~~ 276 (289)
|||+||+|+|+|+|+||+|+..+. ..||||.|++ +.+++
T Consensus 277 ELy~RW~Q~g~F~P~~R~H~~~~~~~~~ePw~f~~-~~~~~ 316 (317)
T cd06599 277 ELFVRWVQNGIFQPRFCIHSWNTDNTVTEPWMYPE-VTDYI 316 (317)
T ss_pred HHHHHHHHHccCCHhhhcccCCCCCCCcCCeeccc-chhhc
Confidence 999999999999999999997543 6799999964 55544
No 13
>PRK10658 putative alpha-glucosidase; Provisional
Probab=100.00 E-value=2.2e-69 Score=536.78 Aligned_cols=262 Identities=24% Similarity=0.473 Sum_probs=241.6
Q ss_pred cchhhccc---CcccccCCCCCCChHHHHHHHHHCCCeEEEeeCCeeccCCCccccccccccceeeecCCCCceeeeecC
Q 022976 5 WILTTWMD---FVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWP 81 (289)
Q Consensus 5 ~~~~~w~d---~~~f~~d~~~FPdp~~~i~~L~~~g~k~~~~v~P~i~~~~~~~~y~~~~~~~~~v~~~~g~~~~~~~w~ 81 (289)
|+|..||+ +++|+||+++||||++|+++||++|+|+++|++|+|..+ ++.|+++.++|+||++++|+++++.+|+
T Consensus 303 ~lD~~w~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~~--s~~f~e~~~~gy~vk~~~G~~~~~~~W~ 380 (665)
T PRK10658 303 HFDCFWMKEFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQK--SPLFKEGKEKGYLLKRPDGSVWQWDKWQ 380 (665)
T ss_pred EEchhhhcCCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCCC--chHHHHHHHCCeEEECCCCCEeeeeecC
Confidence 57778888 579999999999999999999999999999999999875 4689999999999999999999999999
Q ss_pred CcccCCCCCCHHHHHHHHHHHHHHHhcCccEEEecCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHH
Q 022976 82 GPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMAR 161 (289)
Q Consensus 82 g~~~~~Dftnp~a~~ww~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~lp~~~~~~~~~~~g~~~~~~~~hN~y~~~~~~ 161 (289)
|.++++|||||+|++||.+++++++++||||||+|++|+ +|.+..+.. | ..+.++||+|++++++
T Consensus 381 g~~~~~Dftnp~ar~W~~~~~~~l~d~Gvdgfw~D~gE~---------~p~d~~~~~-----G-~~~~~~hN~Y~~l~~k 445 (665)
T PRK10658 381 PGMAIVDFTNPDACKWYADKLKGLLDMGVDCFKTDFGER---------IPTDVVWFD-----G-SDPQKMHNYYTYLYNK 445 (665)
T ss_pred CCceeecCCCHHHHHHHHHHHHHHHhcCCcEEEecCCce---------eeccceecC-----C-CcHHHhcchhHHHHHH
Confidence 999999999999999999999999999999999999996 454444331 1 1467899999999999
Q ss_pred HHHHHHHhhcCCCCcEEEEcccccCCCccceeeCCCCCCCchHHHHHHHHHHHhhccCCCccccCCCCCCCCCChhHHHH
Q 022976 162 STYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGR 241 (289)
Q Consensus 162 a~~~~~~~~~~~~r~~~~sRs~~~G~qry~~~W~GD~~s~W~~L~~~I~~~l~~~l~G~p~~g~DIgGf~g~~~~EL~~R 241 (289)
|+|+++++..+++|+|+++||+++|+|||+++|+||+.|+|++|+.+|+++|++||||+||||+|||||.+.+++|||+|
T Consensus 446 a~~e~l~~~~~~~r~~i~tRs~~aGsQry~~~WsGD~~stw~~l~~si~~~Ls~glsG~~~~g~DIGGF~g~~~~ELy~R 525 (665)
T PRK10658 446 TVFDVLKETRGEGEAVLFARSATVGGQQFPVHWGGDCYSNYESMAESLRGGLSLGLSGFGFWSHDIGGFENTATADVYKR 525 (665)
T ss_pred HHHHHHHHhcCCCceEEEEecccCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHhcCCccccCccCCCCCCCCHHHHHH
Confidence 99999998878899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcccccccCCCCCCCCCccccChhhHHHHHHHHHHHhh
Q 022976 242 WMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAFFW 285 (289)
Q Consensus 242 W~Q~g~f~P~~R~h~~~~~~~~ePw~~~~~~~~~~r~~i~~~~~ 285 (289)
|+|+|+|+|+||+|+.. ..++||.|++++.+++|++|+-..+
T Consensus 526 W~Q~g~f~P~~R~Hg~~--~~~ePW~fg~e~~~i~r~~i~lRy~ 567 (665)
T PRK10658 526 WCAFGLLSSHSRLHGSK--SYRVPWAYDEEAVDVVRFFTKLKCR 567 (665)
T ss_pred HHHhcccChhhcccCCC--CCcCCcccCHHHHHHHHHHHHHHHH
Confidence 99999999999999875 4699999999999999999985443
No 14
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.2e-69 Score=540.10 Aligned_cols=265 Identities=41% Similarity=0.793 Sum_probs=244.1
Q ss_pred cchh-hccc-CcccccCCCCCCChHHHHHHHHHCCCeEEEeeCCeeccCCCccccccccccceeeecCCCCceeeeecCC
Q 022976 5 WILT-TWMD-FVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPG 82 (289)
Q Consensus 5 ~~~~-~w~d-~~~f~~d~~~FPdp~~~i~~L~~~g~k~~~~v~P~i~~~~~~~~y~~~~~~~~~v~~~~g~~~~~~~w~g 82 (289)
|+|. .||| +++|+||+++||||++|+++||++|+|++++++|+|..+. +.|+++.++|||+++++|+++.+..||+
T Consensus 300 ~lD~~~~~~~~~~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~--~~~~e~~~~Gy~~k~~~g~~~~~~~w~~ 377 (772)
T COG1501 300 VLDIDFWMDNWGDFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDS--PLFKEAIEKGYFVKDPDGEIYQADFWPG 377 (772)
T ss_pred EEeehhhhccccceEECcccCCCHHHHHHHHHhcCceEEEEeccccccCC--chHHHHHHCCeEEECCCCCEeeecccCC
Confidence 5666 5997 9999999999999999999999999999999999999987 5899999999999999999999999999
Q ss_pred cccCCCCCCHHHHHHHHH-HHHHHHhcCccEEEecCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHH
Q 022976 83 PCVFPDYTQSKVRSWWGS-LVKDFIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMAR 161 (289)
Q Consensus 83 ~~~~~Dftnp~a~~ww~~-~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~lp~~~~~~~~~~~g~~~~~~~~hN~y~~~~~~ 161 (289)
.++++|||||+||+||++ ..+.++++||||||+|+|||..++.. ..+.+ .++.++||+|++++++
T Consensus 378 ~~a~~DFtnp~~r~Ww~~~~~~~l~d~Gv~g~W~D~nEp~~~~~~-------~~~~g-------~~~~~~~N~yp~~~~~ 443 (772)
T COG1501 378 NSAFPDFTNPDAREWWASDKKKNLLDLGVDGFWNDMNEPEPFDGD-------GFGNG-------IDHEEMHNLYPLLYAK 443 (772)
T ss_pred cccccCCCCHHHHHHHHHHHHhHHHhcCccEEEccCCCCcccccc-------ccccc-------cCHHHHhcchhHHHHH
Confidence 999999999999999995 55668899999999999999876521 11221 2678999999999999
Q ss_pred HHHHHHHhhcCCCCcEEEEcccccCCCccceeeCCCCCCCchHHHHHHHHHHHhhccCCCccccCCCCCCC--CCChhHH
Q 022976 162 STYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDG--NATPRLF 239 (289)
Q Consensus 162 a~~~~~~~~~~~~r~~~~sRs~~~G~qry~~~W~GD~~s~W~~L~~~I~~~l~~~l~G~p~~g~DIgGf~g--~~~~EL~ 239 (289)
|+|+++++..+++|||+++||+|+|+|||+++|+||+.++|++|+.+|+++|++||||+|+||+|||||.| ++++|||
T Consensus 444 a~~~~~~~~~~~~r~~~lsRsg~aG~Q~~~~~WsGD~~s~wd~l~~si~~~Ls~~~sGi~~wg~DiGGF~g~~~~~~EL~ 523 (772)
T COG1501 444 AVYEALKELGGNERPFILSRSGYAGSQRYAAHWSGDNRSSWDSLRESIPAGLSLSLSGIPFWGHDIGGFTGGDDPTAELY 523 (772)
T ss_pred HHHHHHHhhcCCCceEEEEecccccceeccceeCCccccchHHHHhhHHhhhchhccCCccccccccccCCCCCCCHHHH
Confidence 99999999888999999999999999999999999999999999999999999999999999999999999 6899999
Q ss_pred HHHHHhhhhcccccccCCCCCCCCCccccChhhHHHHHHHHHHHhhh
Q 022976 240 GRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAFFWF 286 (289)
Q Consensus 240 ~RW~Q~g~f~P~~R~h~~~~~~~~ePw~~~~~~~~~~r~~i~~~~~~ 286 (289)
+||+|+|+|+|+||+|+. ....|+||.|++++.+++|++++-.+++
T Consensus 524 ~RW~q~g~F~P~~R~H~~-d~~~rePW~~~e~~~~i~r~~~~lR~~L 569 (772)
T COG1501 524 IRWYQFGAFSPIFRLHGN-DNIPREPWAFGEETEEIVREYIQLRYRL 569 (772)
T ss_pred HHHHHHHhcCchhhhhCC-CCCCCCCccCChhHHHHHHHHHHHHHcc
Confidence 999999999999999998 4478999999999999999999876654
No 15
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=100.00 E-value=1.9e-67 Score=488.56 Aligned_cols=246 Identities=25% Similarity=0.407 Sum_probs=215.9
Q ss_pred CcccccCC-CCCCChHHHHHHHHHCCCeEEEeeCCeeccCC-----CccccccccccceeeecCCCCceee-eecCCccc
Q 022976 13 FVVSLLTR-HRFPDPKSLAADLHLNGFKAIWMLDPGIKHED-----GYFVYDSGSKIDVWIQKADGTPFIG-EVWPGPCV 85 (289)
Q Consensus 13 ~~~f~~d~-~~FPdp~~~i~~L~~~g~k~~~~v~P~i~~~~-----~~~~y~~~~~~~~~v~~~~g~~~~~-~~w~g~~~ 85 (289)
+++++|++ ++||||++||++||++|+|+++||+|+|+.+. .+..|+++.++++||++.+|+++++ .+|||.++
T Consensus 73 ~~~~~f~~~~~FPdp~~mi~~Lh~~G~kv~l~v~P~i~~~~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~g~~~ 152 (340)
T cd06597 73 YDDFSFPVEGRWPNPKGMIDELHEQGVKVLLWQIPIIKLRPHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWFPDSL 152 (340)
T ss_pred ecccccCccccCCCHHHHHHHHHHCCCEEEEEecCccccccccccccchhHHHHHHCCEEEEcCCCCccccccccCCCce
Confidence 55677774 79999999999999999999999999997632 1224678999999999999999875 68999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-hcCccEEEecCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHH
Q 022976 86 FPDYTQSKVRSWWGSLVKDFI-YNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTY 164 (289)
Q Consensus 86 ~~Dftnp~a~~ww~~~~~~~~-~~Gvdg~w~D~~E~~~~~~~~~~lp~~~~~~~~~~~g~~~~~~~~hN~y~~~~~~a~~ 164 (289)
+||||||+|++||++++++++ ++||||||+|++|+.. +.+..+.. + ..+.++||+|+++++++++
T Consensus 153 ~~Dftnp~a~~Ww~~~~~~~~~~~Gidg~w~D~~E~~~--------~~~~~~~~-----g-~~~~~~hN~y~~~~~~~~~ 218 (340)
T cd06597 153 MLDFTNPEAAQWWMEKRRYLVDELGIDGFKTDGGEHVW--------GRDLHFRD-----G-RRGDEMRNTYPNHYVRAYN 218 (340)
T ss_pred eecCCCHHHHHHHHHHHHHHHHhcCCcEEEecCCCccC--------CCCceecC-----C-CcHHHhhcccHHHHHHHHH
Confidence 999999999999999999988 6999999999999752 12222221 1 1467899999999999999
Q ss_pred HHHHhhcCCCCcEEEEcccccCCCccceeeCCCCCCCchHHHHHHHHHHHhhccCCCccccCCCCCCCC-CChhHHHHHH
Q 022976 165 EGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGN-ATPRLFGRWM 243 (289)
Q Consensus 165 ~~~~~~~~~~r~~~~sRs~~~G~qry~~~W~GD~~s~W~~L~~~I~~~l~~~l~G~p~~g~DIgGf~g~-~~~EL~~RW~ 243 (289)
+++++. ++|+|+++||+|+|+|||+++|+||+.|+|++|+.+|+++|++||+|+||+|+|||||.++ +++|||+||+
T Consensus 219 e~~~~~--~~r~filtRs~~~Gsqry~~~WsGD~~s~W~~L~~~i~~~L~~glsG~~~~g~DIgGF~g~~~~~EL~~RW~ 296 (340)
T cd06597 219 DFLRRA--KKDGVTFSRAGYTGAQAHGIFWAGDENSTFGAFRWSVFAGLSASASGIPYWGWDLAGFTGDVPTAELYVRST 296 (340)
T ss_pred HHHHhc--cCCcEEEEecccCccCCCcceecCCCCCCHHHHHHHHHHHHHHhhcCCCcCCCccCCcCCCCCCHHHHHHHH
Confidence 998865 7899999999999999999999999999999999999999999999999999999999997 8999999999
Q ss_pred HhhhhcccccccCCCCC-----CCCCccccChhhHH
Q 022976 244 GIGAMFPFCRGHTESDA-----IDHEPWSFGEEVLF 274 (289)
Q Consensus 244 Q~g~f~P~~R~h~~~~~-----~~~ePw~~~~~~~~ 274 (289)
|+|+|+|+||+|+..+. ..||||.|++.+.+
T Consensus 297 Q~g~F~P~~R~H~~~~~~~~~~~~~epw~~~~~~~~ 332 (340)
T cd06597 297 AMAAFVPIMQYHSEFNGHSSPNEDRTPWNIAERTGE 332 (340)
T ss_pred HHhhcchhhhhccCCCCCCcCcCCccCCcccCcCCC
Confidence 99999999999997643 58999999876543
No 16
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=100.00 E-value=5.5e-66 Score=495.41 Aligned_cols=275 Identities=39% Similarity=0.799 Sum_probs=240.5
Q ss_pred cchhhccc-CcccccCCCCCCChHHHHHHHHHCCCeEEEeeCCeeccCCC-ccccccccccceeeecCCCCceeeeecCC
Q 022976 5 WILTTWMD-FVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDG-YFVYDSGSKIDVWIQKADGTPFIGEVWPG 82 (289)
Q Consensus 5 ~~~~~w~d-~~~f~~d~~~FPdp~~~i~~L~~~g~k~~~~v~P~i~~~~~-~~~y~~~~~~~~~v~~~~g~~~~~~~w~g 82 (289)
|||..|++ +++|+||+++||||++|++.||++|+|++++++|+|..++. +..|+++.++++++++++|+++++.+|+|
T Consensus 63 ~iD~~~~~~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~g 142 (441)
T PF01055_consen 63 WIDDDYQDGYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDEAKEKGYLVKNPDGSPYIGRVWPG 142 (441)
T ss_dssp EE-GGGSBTTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHHHHHTT-BEBCTTSSB-EEEETTE
T ss_pred eccccccccccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhhHhhcCceeecccCCcccccccCC
Confidence 67888888 89999999999999999999999999999999999999876 77899999999999999999999999999
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHhc-CccEEEecCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHH
Q 022976 83 PCVFPDYTQSKVRSWWGSLVKDFIYN-GVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMAR 161 (289)
Q Consensus 83 ~~~~~Dftnp~a~~ww~~~~~~~~~~-Gvdg~w~D~~E~~~~~~~~~~lp~~~~~~~~~~~g~~~~~~~~hN~y~~~~~~ 161 (289)
.+++||||||+|++||.++++++++. ||||||+|++||..+. ...++|.+..+.+. ..+.++||+|++++++
T Consensus 143 ~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~~~-~~~~~~~~~~~~~~------~~~~~~hn~y~~~~~~ 215 (441)
T PF01055_consen 143 KGGFIDFTNPEARDWWKEQLKELLDDYGVDGWWLDFGEPSSFD-SNNTLPEDAVHHDG------YSGYEMHNLYGLLYAK 215 (441)
T ss_dssp EEEEB-TTSHHHHHHHHHHHHHHHTTST-SEEEEESTTTBSST-TTBSBCTTEECTTE------CEHHHHGGGHHHHHHH
T ss_pred cccccCCCChhHHHHHHHHHHHHHhccCCceEEeecCCccccc-ccccCcccceecCC------CCchheeccccccchh
Confidence 99999999999999999999999876 9999999999999764 33345666555431 2578899999999999
Q ss_pred HHHHHHHhhcCCCCcEEEEcccccCCCccceeeCCCCCCCchHHHHHHHHHHHhhccCCCccccCCCCCCCCCChhHHHH
Q 022976 162 STYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGR 241 (289)
Q Consensus 162 a~~~~~~~~~~~~r~~~~sRs~~~G~qry~~~W~GD~~s~W~~L~~~I~~~l~~~l~G~p~~g~DIgGf~g~~~~EL~~R 241 (289)
++++++++..+++|+++++||+++|+|||+++|+||+.++|++|+.+|+.+|++|+||+|++|+|||||.+.+++|||+|
T Consensus 216 ~~~~~~~~~~~~~r~~~~sRs~~~G~qr~~~~w~GD~~s~w~~L~~~i~~~l~~~~~G~~~~g~DigG~~~~~~~eL~~R 295 (441)
T PF01055_consen 216 ATYEALREIDPNKRPFIFSRSGWAGSQRYGGHWSGDNSSSWDGLRSSIPAMLNMGLSGYPFWGSDIGGFSGDPDEELYIR 295 (441)
T ss_dssp HHHHHHHHHSTTSC-EEEESSEETTGGGTCEEEECSSBSSHHHHHHHHHHHHHHHCTT-SSEEEEET-SBSTSSHHHHHH
T ss_pred hhhhhhhhccCCCCcceeecccCCCCCccceeecccccccHHHHHHHHHHHHHHhhhhcceecCcccccCCCCCHHHHHH
Confidence 99999998778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcccccccCCCCCCCCCccccChhhHHHHHHHHHHHhhh
Q 022976 242 WMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAFFWF 286 (289)
Q Consensus 242 W~Q~g~f~P~~R~h~~~~~~~~ePw~~~~~~~~~~r~~i~~~~~~ 286 (289)
|+|+|+|+|+||+|+..+..+++||.|++++.+++|++|+...+.
T Consensus 296 W~q~~~f~p~~r~h~~~~~~~~~Pw~~~~~~~~~~r~~~~lRy~L 340 (441)
T PF01055_consen 296 WYQFGAFSPLFRNHGNKPSNPREPWSFGDEAEDIFRRAIRLRYRL 340 (441)
T ss_dssp HHHHHTTSSSEEEEESTTSSB-SGGGSSCTHHHHHHHHHHHHHHC
T ss_pred HHHhhcCCcceeecCCcccccccccccchHHHHHHHHHHHHHHhH
Confidence 999999999999997666667899999999999999999876653
No 17
>PRK10426 alpha-glucosidase; Provisional
Probab=100.00 E-value=2.7e-64 Score=499.14 Aligned_cols=250 Identities=24% Similarity=0.424 Sum_probs=221.4
Q ss_pred cccccCCCCCCChHHHHHHHHHCCCeEEEeeCCeeccCCCccccccccccceeeecCCCCceeeeecCCcccCCCCCCHH
Q 022976 14 VVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSK 93 (289)
Q Consensus 14 ~~f~~d~~~FPdp~~~i~~L~~~g~k~~~~v~P~i~~~~~~~~y~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~ 93 (289)
++|+||+++||||++|+++||++|+|++++++|+|+.+ +.+|+++.++|+||++++|+++++.+|++.+++||||||+
T Consensus 259 ~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~~~--~~~y~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ 336 (635)
T PRK10426 259 WNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLASD--GDLCEEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPE 336 (635)
T ss_pred ccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccCCC--CHHHHHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHH
Confidence 46899999999999999999999999999999999884 5689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHhcCccEEEecCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHhhcC
Q 022976 94 VRSWWGSLVK-DFIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADK 172 (289)
Q Consensus 94 a~~ww~~~~~-~~~~~Gvdg~w~D~~E~~~~~~~~~~lp~~~~~~~~~~~g~~~~~~~~hN~y~~~~~~a~~~~~~~~~~ 172 (289)
|++||+++++ .+++.||||||+|+||+ +|.+..+.. | ..+.++||+|+++++++++|++++..+
T Consensus 337 ar~Ww~~~~~~~~~~~Gvdg~w~D~~E~---------~p~d~~~~~-----g-~~~~~~hN~Y~~l~~~~~~e~~~~~~~ 401 (635)
T PRK10426 337 AYEWFKEVIKKNMIGLGCSGWMADFGEY---------LPTDAYLHN-----G-VSAEIMHNAWPALWAKCNYEALEETGK 401 (635)
T ss_pred HHHHHHHHHHHHHhhcCCCEEeeeCCCC---------CCCcceeeC-----C-CCHHHhccHHHHHHHHHHHHHHHHhcC
Confidence 9999999985 56799999999999995 455544432 1 246789999999999999999998766
Q ss_pred CCCcEEEEcccccCCCccce-eeCCCCCCCch---HHHHHHHHHHHhhccCCCccccCCCCCCC----CCChhHHHHHHH
Q 022976 173 DKRPFVLTRAGFIGSQRYAA-TWTGDNVSNWE---HLHMSISMVLQLGLSGQPFSGPDIGGFDG----NATPRLFGRWMG 244 (289)
Q Consensus 173 ~~r~~~~sRs~~~G~qry~~-~W~GD~~s~W~---~L~~~I~~~l~~~l~G~p~~g~DIgGf~g----~~~~EL~~RW~Q 244 (289)
.+|+|+++||+|+|+|||++ +|+||+.|+|+ +|+.+|+++|++||||+|+||+|||||.+ .+++|||+||+|
T Consensus 402 ~~r~f~ltRsg~aGsQry~~~~WsGD~~ssW~~~d~L~~~I~~~Ls~glsG~~~~g~DIGGF~~~~~~~~~~EL~~RW~Q 481 (635)
T PRK10426 402 LGEILFFMRAGYTGSQKYSTLFWAGDQNVDWSLDDGLASVVPAALSLGMSGHGLHHSDIGGYTTLFGMKRTKELLLRWCE 481 (635)
T ss_pred CCCcEEEEccccCCcCCccccccCCCCCCcCcChhHHHHHHHHHHHHHhcCcCccccccCCCcCcCCCCCCHHHHHHHHH
Confidence 67999999999999999985 89999999995 89999999999999999999999999974 479999999999
Q ss_pred hhhhcccccccCCCCCCCCCccccCh--hhHHHHHHHHHH
Q 022976 245 IGAMFPFCRGHTESDAIDHEPWSFGE--EVLFCSSIVIIA 282 (289)
Q Consensus 245 ~g~f~P~~R~h~~~~~~~~ePw~~~~--~~~~~~r~~i~~ 282 (289)
+|+|+|+||+|+.. .+++||.|+. ++...++++++.
T Consensus 482 ~gaF~P~~R~H~~~--~~~epw~f~~~~~~~~~~~~~~~l 519 (635)
T PRK10426 482 FSAFTPVMRTHEGN--RPGDNWQFDSDAETIAHFARMTRV 519 (635)
T ss_pred HhcCCceeecCCCC--CCCCCCCCCCcHHHHHHHHHHHHH
Confidence 99999999999864 5789999964 344455555443
No 18
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=100.00 E-value=5.3e-63 Score=452.89 Aligned_cols=240 Identities=24% Similarity=0.414 Sum_probs=216.3
Q ss_pred cchhhccc-CcccccCCCCCCChHHHHHHHHHCCCeEEEeeCCeeccCCCccccccccccceeeecCCC-CceeeeecCC
Q 022976 5 WILTTWMD-FVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADG-TPFIGEVWPG 82 (289)
Q Consensus 5 ~~~~~w~d-~~~f~~d~~~FPdp~~~i~~L~~~g~k~~~~v~P~i~~~~~~~~y~~~~~~~~~v~~~~g-~~~~~~~w~g 82 (289)
|||..|++ +++|+||+++||||++|+++||++|+|+++|++|+|+.++ ..|+++.++++||++++| .++.+.+|+|
T Consensus 50 ~iD~~w~~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s--~~~~e~~~~g~~vk~~~g~~~~~~~~w~g 127 (303)
T cd06592 50 EIDDNWETCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDS--ENFREAVEKGYLVSEPSGDIPALTRWWNG 127 (303)
T ss_pred EeCCCccccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCC--HHHHhhhhCCeEEECCCCCCCcccceecC
Confidence 78888988 8999999999999999999999999999999999998865 479999999999999988 7888999999
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHH-hcCccEEEecCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHH
Q 022976 83 PCVFPDYTQSKVRSWWGSLVKDFI-YNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMAR 161 (289)
Q Consensus 83 ~~~~~Dftnp~a~~ww~~~~~~~~-~~Gvdg~w~D~~E~~~~~~~~~~lp~~~~~~~~~~~g~~~~~~~~hN~y~~~~~~ 161 (289)
.++++|||||+|++||.+++++++ +.||||||+|++||.. +|....+. .+..+||.|..++++
T Consensus 128 ~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~-------~p~~~~~~---------~~~~~~n~y~~~~~~ 191 (303)
T cd06592 128 TAAVLDFTNPEAVDWFLSRLKSLQEKYGIDSFKFDAGEASY-------LPQDYVTE---------DPLLNPDEYTRLYAE 191 (303)
T ss_pred CcceEeCCCHHHHHHHHHHHHHHHHHhCCcEEEeCCCCccc-------CCcccccC---------CcccCHHHHHHHHHH
Confidence 999999999999999999999988 8999999999999974 45444333 134689999999988
Q ss_pred HHHHHHHhhcCCCCcEEEEcccccCCCccceeeCCCCCCCchHH---HHHHHHHHHhhccCCCccccC-CCCCCC-----
Q 022976 162 STYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHL---HMSISMVLQLGLSGQPFSGPD-IGGFDG----- 232 (289)
Q Consensus 162 a~~~~~~~~~~~~r~~~~sRs~~~G~qry~~~W~GD~~s~W~~L---~~~I~~~l~~~l~G~p~~g~D-IgGf~g----- 232 (289)
++++ . ++++++||+|+|+|+++.+|+||+.|+|+++ +.+|+++|++||||+|||++| ||||.+
T Consensus 192 ~~~~----~----~~~~~~Rsg~~g~~~~~~~w~GD~~s~W~~~~gl~~~i~~~L~~~lsG~~~w~~D~iGGf~~~~~~~ 263 (303)
T cd06592 192 MVAE----F----GDLIEVRAGWRSQGLPLFVRMMDKDSSWGGDNGLKSLIPTALTMGLLGYPFVLPDMIGGNAYGGNSD 263 (303)
T ss_pred HHHh----h----ccceEEEeeeecCCCCeeEEcCCCCCCCCCCcCHHHHHHHHHHhhccCCcccCCCccCCcccccccc
Confidence 7644 1 3899999999999888899999999999876 999999999999999999999 899864
Q ss_pred --CCChhHHHHHHHhhhhcccccccCCCCCCCCCccccChhhHHHHH
Q 022976 233 --NATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSS 277 (289)
Q Consensus 233 --~~~~EL~~RW~Q~g~f~P~~R~h~~~~~~~~ePw~~~~~~~~~~r 277 (289)
.+++|||+||+|+|+|+|+||+| ++||.|++++.+++|
T Consensus 264 ~~~~~~EL~~RW~q~g~f~P~~R~h-------~~PW~~~~e~~~~~~ 303 (303)
T cd06592 264 DELPDKELYIRWLQLSAFLPVMQFS-------IAPWQYDDEVVEIAK 303 (303)
T ss_pred CCCCCHHHHHHHHHHHHhChhhhcc-------cCCccCCHHHHHhhC
Confidence 37999999999999999999999 589999999999875
No 19
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=100.00 E-value=6.8e-62 Score=443.40 Aligned_cols=235 Identities=25% Similarity=0.397 Sum_probs=189.7
Q ss_pred cchhhccc----------CcccccCCCCCCChHHHHHHHHHCCCeEEEeeCCeeccCCCccccccccccceeeecCCCCc
Q 022976 5 WILTTWMD----------FVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTP 74 (289)
Q Consensus 5 ~~~~~w~d----------~~~f~~d~~~FPdp~~~i~~L~~~g~k~~~~v~P~i~~~~~~~~y~~~~~~~~~v~~~~g~~ 74 (289)
|||..|++ +++|+||+++||||++|+++||++|+|++++++|+|..+..+..|++.++ +..+ ++
T Consensus 45 ~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~~~~~~~~~y~~~~~-~~~~-----~~ 118 (292)
T cd06595 45 VIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPADGIRAHEDQYPEMAK-ALGV-----DP 118 (292)
T ss_pred EEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCCcccCCCcHHHHHHHH-hcCC-----Cc
Confidence 56666653 57899999999999999999999999999999999877555556665221 1111 11
Q ss_pred eeeeecCCcccCCCCCCHHHHHHHHHHH-HHHHhcCccEEEecCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccchhh
Q 022976 75 FIGEVWPGPCVFPDYTQSKVRSWWGSLV-KDFIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHN 153 (289)
Q Consensus 75 ~~~~~w~g~~~~~Dftnp~a~~ww~~~~-~~~~~~Gvdg~w~D~~E~~~~~~~~~~lp~~~~~~~~~~~g~~~~~~~~hN 153 (289)
.. +..+++|||||+|++||.+++ +.+.+.||||||+|++||+.+. .+. +.+..+||
T Consensus 119 ~~-----~~~~~~D~tnp~a~~~w~~~~~~~~~~~Gidg~W~D~~E~~~~~-----~~~-------------~~~~~~~~ 175 (292)
T cd06595 119 AT-----EGPILFDLTNPKFMDAYFDNVHRPLEKQGVDFWWLDWQQGNRTR-----TPG-------------LDPLWWLN 175 (292)
T ss_pred cc-----CCeEEecCCCHHHHHHHHHHHHHHHHhcCCcEEEecCCCCcccc-----cCC-------------cchHHHHH
Confidence 11 123578999999999887666 5566999999999999987541 000 01223344
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcEEEEcccccCCCccceeeCCCCCCCchHHHHHHHHHHHhhccCCCccccCCCCCCC-
Q 022976 154 VYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDG- 232 (289)
Q Consensus 154 ~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~qry~~~W~GD~~s~W~~L~~~I~~~l~~~l~G~p~~g~DIgGf~g- 232 (289)
.| .|+.+++ +++|+|+++||+|+|+|||+++|+||+.|+|+.|+.+|+.+|++|++|+||||+|||||.+
T Consensus 176 ~~-------~y~~~~~--~~~r~f~lsRs~~~G~qry~~~WsGD~~s~W~~l~~~i~~~l~~~~sG~p~~g~DiGGF~~~ 246 (292)
T cd06595 176 HV-------HYLDSAR--NGRRPLIFSRWAGLGSHRYPIGFSGDTIISWASLAFQPYFTATASNIGYGYWSHDIGGHMLG 246 (292)
T ss_pred HH-------HHHHhhc--cCCCcEEEEeecccCCCcCCCccCCCcccCHHHHHHHHHHHHHHHhcCCCcCCCccCCCCCC
Confidence 43 3444433 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHhhhhcccccccCCCCC-CCCCccccChhhHHHHH
Q 022976 233 NATPRLFGRWMGIGAMFPFCRGHTESDA-IDHEPWSFGEEVLFCSS 277 (289)
Q Consensus 233 ~~~~EL~~RW~Q~g~f~P~~R~h~~~~~-~~~ePw~~~~~~~~~~r 277 (289)
++++|||+||+|+|+|+|+||+|+.... .+||||.|+++++++++
T Consensus 247 ~~~~ELy~RW~Q~gaf~P~~R~H~~~~~~~~~ePW~~g~~~~~~~~ 292 (292)
T cd06595 247 VTDPELYTRWIQFGVFSPILRLHSTKNPFNEKEPWLYEEEASKIMD 292 (292)
T ss_pred CCCHHHHHHHHHHhhcccccccCCCCCCCCCccCcccCcHHHHhhC
Confidence 6999999999999999999999998754 58999999999998863
No 20
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=100.00 E-value=1.4e-59 Score=422.86 Aligned_cols=217 Identities=41% Similarity=0.775 Sum_probs=195.9
Q ss_pred cchhhccc-Cccc--ccCCCCCCChHHHHHHHHHCCCeEEEeeCCeeccCCCccccccccccceeeecCCCCceeeeecC
Q 022976 5 WILTTWMD-FVVS--LLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWP 81 (289)
Q Consensus 5 ~~~~~w~d-~~~f--~~d~~~FPdp~~~i~~L~~~g~k~~~~v~P~i~~~~~~~~y~~~~~~~~~v~~~~g~~~~~~~w~ 81 (289)
|||..|++ +++| +||+++||||++|+++||++|+|++++++|+|
T Consensus 44 ~lD~~~~~~~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v--------------------------------- 90 (265)
T cd06589 44 VLDDDYTDGYGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI--------------------------------- 90 (265)
T ss_pred EECcccccCCceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH---------------------------------
Confidence 67778888 8888 99999999999999999999999999999998
Q ss_pred CcccCCCCCCHHHHHHHHHHHHHH-HhcCccEEEecCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHH
Q 022976 82 GPCVFPDYTQSKVRSWWGSLVKDF-IYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMA 160 (289)
Q Consensus 82 g~~~~~Dftnp~a~~ww~~~~~~~-~~~Gvdg~w~D~~E~~~~~~~~~~lp~~~~~~~~~~~g~~~~~~~~hN~y~~~~~ 160 (289)
++||.++++++ .+.||||||+|++||..++... .+.... +...+.++||+|+++++
T Consensus 91 -------------~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~--~~~~~~--------~~~~~~~~hn~y~~~~~ 147 (265)
T cd06589 91 -------------REWWAEVVKKLLVSLGVDGFWTDMGEPSPGDGNI--FTGGVV--------GRVKHEEMHNAYPLLYA 147 (265)
T ss_pred -------------HHHHHHHHHHhhccCCCCEEeccCCCCCcCCCcc--ccCCcC--------CCccHHHHcchhHHHHH
Confidence 89999999887 6899999999999998764321 111000 11257899999999999
Q ss_pred HHHHHHHHhhcCCCCcEEEEcccccCCCccceeeCCCCCCCchHHHHHHHHHHHhhccCCCccccCCCCCCC-CCChhHH
Q 022976 161 RSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDG-NATPRLF 239 (289)
Q Consensus 161 ~a~~~~~~~~~~~~r~~~~sRs~~~G~qry~~~W~GD~~s~W~~L~~~I~~~l~~~l~G~p~~g~DIgGf~g-~~~~EL~ 239 (289)
+++++++++..+++|+|+++||+++|+|||+.+|+||+.++|+.|+.+|+++|++||+|+|++|+|||||.+ ++++|||
T Consensus 148 ~~~~~~~~~~~~~~r~~~~sRs~~~Gsqry~~~W~GD~~stW~~l~~~i~~~l~~~l~G~~~~g~DigGf~~~~~~~EL~ 227 (265)
T cd06589 148 EATYEALRKNSKNKRPFILSRSGYAGSQRYAGMWSGDNTSTWGYLRSQIPAGLTMSMSGIPFVGSDIGGFTGGDPSAELY 227 (265)
T ss_pred HHHHHHHHHhcCCCCeEEEEcCCcccccCcCceeCCcccCCHHHHHHHHHHHHhhhccCCcccCCCcCCCCCCCCCHHHH
Confidence 999999998878999999999999999999999999999999999999999999999999999999999999 7999999
Q ss_pred HHHHHhhhhcccccccCCCCCCCCCccccChhhHHHHH
Q 022976 240 GRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSS 277 (289)
Q Consensus 240 ~RW~Q~g~f~P~~R~h~~~~~~~~ePw~~~~~~~~~~r 277 (289)
+||+|+|+|+|+||+|+......+|||.|++++.+++|
T Consensus 228 ~RW~Q~g~F~P~~R~H~~~~~~~~epw~~~~~~~~~~r 265 (265)
T cd06589 228 VRWFQFGAFTPIMRFHSWNSPKDTEPWAFDEEVTAIIR 265 (265)
T ss_pred HHHHHHhcCCcceecCCCCCCCCcCCCCcCHHHHHhhC
Confidence 99999999999999999987778999999999888765
No 21
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.8e-57 Score=442.32 Aligned_cols=270 Identities=38% Similarity=0.696 Sum_probs=243.8
Q ss_pred cccchhhccc-CcccccCCCCCCChHHHHHHHHHCCCeEEEeeCCeeccCCCccccccccccceeeecCCCCc-eeeeec
Q 022976 3 YGWILTTWMD-FVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTP-FIGEVW 80 (289)
Q Consensus 3 ~~~~~~~w~d-~~~f~~d~~~FPdp~~~i~~L~~~g~k~~~~v~P~i~~~~~~~~y~~~~~~~~~v~~~~g~~-~~~~~w 80 (289)
..|+|..||| |+|||.|+.+||+.+++++.||++|+|++++++|+|..+..|..|++|.+++++|++.+|++ +++++|
T Consensus 329 ~~~~DiDyMd~ykDFTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~y~~y~~g~~~~v~I~~~~g~~~~lg~vw 408 (805)
T KOG1065|consen 329 VIVIDIDYMDGYKDFTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSSYGPYDRGVAKDVLIKNREGSPKMLGEVW 408 (805)
T ss_pred eeeeehhhhhcccceeeccccCcchHHHHHHHHhCCCeEEEEeCCccccCccchhhhhhhhhceeeecccCchhhhcccC
Confidence 3699999999 99999999999999999999999999999999999999888889999999999999999988 899999
Q ss_pred CCcccCCCCCCHHHHHHHHHHHHHHH-hcCccEEEecCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHHH
Q 022976 81 PGPCVFPDYTQSKVRSWWGSLVKDFI-YNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLM 159 (289)
Q Consensus 81 ~g~~~~~Dftnp~a~~ww~~~~~~~~-~~Gvdg~w~D~~E~~~~~~~~~~lp~~~~~~~~~~~g~~~~~~~~hN~y~~~~ 159 (289)
||.+++||||||++.+||.++++.+. ++++||+|+||||++.|+..+ + ......++ +.. ...+.||+|++..
T Consensus 409 P~~~~fpDftnp~~~~Ww~~~~~~fh~~vp~dg~wiDmnE~snf~~pp-~--~~~~~~~~--~~~--~tyd~~~lyg~~~ 481 (805)
T KOG1065|consen 409 PGSTAFPDFTNPAVVEWWLDELKRFHDEVPFDGFWIDMNEPSNFPSPP-I--NPTLDNGD--LYA--KTYDTHNLYGYSE 481 (805)
T ss_pred CCcccccccCCchHHHHHHHHHHhhcccCCccceEEECCCcccCCCCC-c--cccccccc--ccc--cchhhhhhHhHHH
Confidence 99999999999999999999999887 589999999999999987421 1 11112221 100 1157899999999
Q ss_pred HHHHHHHHHhhcCCCCcEEEEcccccCCCccceeeCCCCCCCchHHHHHHHHHHHhhccCCCccccCCCCCCCCCChhHH
Q 022976 160 ARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLF 239 (289)
Q Consensus 160 ~~a~~~~~~~~~~~~r~~~~sRs~~~G~qry~~~W~GD~~s~W~~L~~~I~~~l~~~l~G~p~~g~DIgGf~g~~~~EL~ 239 (289)
+.|+++++.++. ++|+++++||+|+|++||++||+||+.++|+.|+.+|+.||.++|+|+|+.|+|||||.+.+++|||
T Consensus 482 aiat~~a~~~v~-~kr~~i~srsTf~g~g~y~~hwlgdn~~~w~~L~~sI~gml~fnl~Gip~Vg~Dicgf~~~~~eELc 560 (805)
T KOG1065|consen 482 AIATHQALVDVP-GKRSFILSRSTFVGSGRYAGHWLGDNTARWEDLQTSISGMLEFNLFGIPMVGSDICGFLGPPTEELC 560 (805)
T ss_pred hhhhhccceecc-ccccccccccceecccccceeecccccceehhccccchhhhcccccCCCccchhhhcCCCCCCHHHH
Confidence 999999998886 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcccccccCCCCCCCCCccccChhhHHHHHHHHH
Q 022976 240 GRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVII 281 (289)
Q Consensus 240 ~RW~Q~g~f~P~~R~h~~~~~~~~ePw~~~~~~~~~~r~~i~ 281 (289)
.||+|+|||+|.||+|+......+||..++. +++.+|.++-
T Consensus 561 ~RW~q~gaF~Pf~R~hn~~~~~~qe~~~~~s-v~~a~r~~~~ 601 (805)
T KOG1065|consen 561 LRWLQLGAFYPFSRNHNSPGEPRQEPYTWSS-VAEAARNALT 601 (805)
T ss_pred HHHHHhccCCchhhccCCCCCcccChhhHHH-HHHHHHHhhh
Confidence 9999999999999999998888999999976 7777776654
No 22
>cd06596 GH31_CPE1046 CPE1046 is an uncharacterized Clostridium perfringens protein with a glycosyl hydrolase family 31 (GH31) domain. The domain architecture of CPE1046 and its orthologs includes a C-terminal fibronectin type 3 (FN3) domain and a coagulation factor 5/8 type C domain in addition to the GH31 domain. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=100.00 E-value=2.2e-40 Score=290.65 Aligned_cols=131 Identities=29% Similarity=0.541 Sum_probs=123.8
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCcEEEEcccccCCCccceeeCCCCCCCchHHHHHHHHHHHhhccCCCccccCCCCCC
Q 022976 152 HNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFD 231 (289)
Q Consensus 152 hN~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~qry~~~W~GD~~s~W~~L~~~I~~~l~~~l~G~p~~g~DIgGf~ 231 (289)
+-.|++.+++++|+++++. +++|||+++||+|+|+|||+++|+||+.++|+.|+.+|+++|++||||+||||+|||||.
T Consensus 124 gy~~~l~~~ka~yeg~~~~-~~~RpfiltRsg~aGsQRy~~~WsGD~~stWe~Lr~sI~~~L~~gLsG~p~~G~DIGGF~ 202 (261)
T cd06596 124 GYSFALNGVKAAADGIESN-SNARPFIVTVDGWAGTQRYAGIWTGDQSGSWEYIRFHIPTYIGSGLSGQPNTTSDVDGIF 202 (261)
T ss_pred chhHHHHHHHHHHHHHHhC-CCCCCEEEEecCccccCCCCCccCCCCcCcHHHHHHHHHHHHHHHhcCCCcCccccCcCC
Confidence 4568889999999999876 889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHhhhhcccccccCCCCCCCCCccccChhhHHHHHHHHHHHh
Q 022976 232 GNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAFF 284 (289)
Q Consensus 232 g~~~~EL~~RW~Q~g~f~P~~R~h~~~~~~~~ePw~~~~~~~~~~r~~i~~~~ 284 (289)
++ ++|||+||+|+|+|+|+||+|+..++..+|||.|++++.+++|++|+--.
T Consensus 203 g~-~~EL~vRW~Q~gaF~P~~R~h~~~~~~~rEPW~fge~~~~i~R~~l~LRY 254 (261)
T cd06596 203 GG-SPETYTRDLQWKAFTPVLMTMSGWAANDKQPWVFGEPYTSINRDYLKLKM 254 (261)
T ss_pred CC-CHHHHHHHHHHHHhhhhhhhccCCCCCCCCCeeCCHHHHHHHHHHHHHHH
Confidence 98 99999999999999999999998777899999999999999999997543
No 23
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=99.03 E-value=5.3e-09 Score=99.04 Aligned_cols=108 Identities=22% Similarity=0.305 Sum_probs=75.2
Q ss_pred chhhccc--------CcccccCCCCCCC-hHHHHHHHHHCCCeEEEeeCCeeccCCCccccccccccceeeecCCCCcee
Q 022976 6 ILTTWMD--------FVVSLLTRHRFPD-PKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFI 76 (289)
Q Consensus 6 ~~~~w~d--------~~~f~~d~~~FPd-p~~~i~~L~~~g~k~~~~v~P~i~~~~~~~~y~~~~~~~~~v~~~~g~~~~ 76 (289)
||+.|.. .++++.|+++||+ .+.+++.+|++|+|..+|+.|.+.... ..+|++-. +..++.++.....
T Consensus 77 iDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~-S~l~~~hP--dw~l~~~~~~~~~ 153 (394)
T PF02065_consen 77 IDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMVSPD-SDLYREHP--DWVLRDPGRPPTL 153 (394)
T ss_dssp E-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEEESS-SCHCCSSB--GGBTCCTTSE-EC
T ss_pred EcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccccch-hHHHHhCc--cceeecCCCCCcC
Confidence 5666652 6899999999999 799999999999999999999764322 23555432 3444433322211
Q ss_pred eeecCCcccCCCCCCHHHHHHHHHHHHHHH-hcCccEEEecCCCC
Q 022976 77 GEVWPGPCVFPDYTQSKVRSWWGSLVKDFI-YNGVDGIWNDMNEP 120 (289)
Q Consensus 77 ~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~-~~Gvdg~w~D~~E~ 120 (289)
+ ....++|+++|++++|..+.+.+++ +.|||.+|.|++..
T Consensus 154 ~----r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~ 194 (394)
T PF02065_consen 154 G----RNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRD 194 (394)
T ss_dssp B----TTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-
T ss_pred c----ccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEeccccC
Confidence 1 1235799999999999999998765 79999999999974
No 24
>PLN03231 putative alpha-galactosidase; Provisional
Probab=98.65 E-value=9.6e-07 Score=82.29 Aligned_cols=167 Identities=17% Similarity=0.148 Sum_probs=103.2
Q ss_pred CcccccCCCCCCC------hHHHHHHHHHCCCeEEEeeCCeeccCC---CccccccccccceeeecCC-CCceeeeecC-
Q 022976 13 FVVSLLTRHRFPD------PKSLAADLHLNGFKAIWMLDPGIKHED---GYFVYDSGSKIDVWIQKAD-GTPFIGEVWP- 81 (289)
Q Consensus 13 ~~~f~~d~~~FPd------p~~~i~~L~~~g~k~~~~v~P~i~~~~---~~~~y~~~~~~~~~v~~~~-g~~~~~~~w~- 81 (289)
++.+.-|++|||+ .+.+.+++|++|+|+-+.++|.+.... ++++.-..-..++-..-.| ..+-+.-.|.
T Consensus 69 ~G~l~pd~~rFPs~~~~~G~k~lADyvHs~GLKfGIY~~~G~~tca~~~~~pi~G~~Gs~g~~~~a~Dia~~~~~c~~~~ 148 (357)
T PLN03231 69 WGRPLPDPKRWPSTTGGKGFAPIAAKVHALGLKLGIHVMRGISTTAVKKKTPILGAFKSNGHAWNAKDIALMDQACPWMQ 148 (357)
T ss_pred CCCcccCcccCCCCccccCcHHHHHHHHhCCcceEEEecCCccchhcccCCccCCCCcccccccchhhhccccccccccc
Confidence 7789999999997 899999999999999999999887643 2211100000011000000 0000011122
Q ss_pred CcccCCCCCCHHHHHHHHHHHHHHHhcCccEEEecCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHHH
Q 022976 82 GPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMAR 161 (289)
Q Consensus 82 g~~~~~Dftnp~a~~ww~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~lp~~~~~~~~~~~g~~~~~~~~hN~y~~~~~~ 161 (289)
....-+|...+.|++|+.+..+.+-+.|||.+|.|...+.. . .+ ...| .
T Consensus 149 ~~~~~v~~~~~gaq~y~~~~a~~fA~WGVDylK~D~c~~~~----------~-------------~~---~~~y-----~ 197 (357)
T PLN03231 149 QCFVGVNTSSEGGKLFIQSLYDQYASWGIDFIKHDCVFGAE----------N-------------PQ---LDEI-----L 197 (357)
T ss_pred cccccccccchhHHHHHHHHHHHHHHhCCCEEeecccCCCC----------c-------------cc---HHHH-----H
Confidence 22235788999999999998888889999999999542110 0 00 1122 2
Q ss_pred HHHHHHHhhcCCCCcEEEEcccccCC--------Cccceee--CCCCCCCchHHHHHHHHHH
Q 022976 162 STYEGMKLADKDKRPFVLTRAGFIGS--------QRYAATW--TGDNVSNWEHLHMSISMVL 213 (289)
Q Consensus 162 a~~~~~~~~~~~~r~~~~sRs~~~G~--------qry~~~W--~GD~~s~W~~L~~~I~~~l 213 (289)
++.++|++ ..||+++|=+-..+. +.++..| +||...+|+.+...+...-
T Consensus 198 ~m~~AL~~---tGRpIv~Slc~g~~~~~~~~~~i~~~an~WR~s~DI~d~W~~v~~~~~~~~ 256 (357)
T PLN03231 198 TVSKAIRN---SGRPMIYSLSPGDGATPGLAARVAQLVNMYRVTGDDWDDWKYLVKHFDVAR 256 (357)
T ss_pred HHHHHHHH---hCCCeEEEecCCCCCCchhhhhhhhhcCcccccCCcccchhhHHHHHHHHH
Confidence 45566665 469999997631111 1223344 6999999999877776553
No 25
>PLN02899 alpha-galactosidase
Probab=98.36 E-value=1.8e-05 Score=77.79 Aligned_cols=163 Identities=17% Similarity=0.175 Sum_probs=99.9
Q ss_pred CcccccCCCCCCC------hHHHHHHHHHCCCeEEEeeCCeeccCC---Ccccccc-------ccccceeeecCCCCcee
Q 022976 13 FVVSLLTRHRFPD------PKSLAADLHLNGFKAIWMLDPGIKHED---GYFVYDS-------GSKIDVWIQKADGTPFI 76 (289)
Q Consensus 13 ~~~f~~d~~~FPd------p~~~i~~L~~~g~k~~~~v~P~i~~~~---~~~~y~~-------~~~~~~~v~~~~g~~~~ 76 (289)
++.+..|++|||+ .+.+.+++|++|+|+-+.+++.+.... +.++... +...++-.++- +.+-.
T Consensus 96 ~GrLvPDp~RFPSs~~g~GmK~LADYVHskGLKFGIY~~~Gi~tcA~~~~~PI~gs~~g~~y~~s~~~~~a~DI-a~~~~ 174 (633)
T PLN02899 96 WGRPIPDPGRWPSSRGGKGFTEVAEKVHAMGLKFGIHVMRGISTQAVNANTPILDAVKGGAYEESGRQWRAKDI-ALKER 174 (633)
T ss_pred CCCCccCcccCCCCccCCCcHHHHHHHHhCCcceEEEecCCCcccccccCCccccccccccccccccccchhhc-ccccc
Confidence 5678899999996 799999999999999999999876532 1122111 00001111110 00000
Q ss_pred eeecCC-cccCCCCCCHHHHHHHHHHHHHHHhcCccEEEecCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccchhhHH
Q 022976 77 GEVWPG-PCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVY 155 (289)
Q Consensus 77 ~~~w~g-~~~~~Dftnp~a~~ww~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~lp~~~~~~~~~~~g~~~~~~~~hN~y 155 (289)
.-.|.. .---+|.+.+.+++++....+.+-+.|||.+|.|...+.. . .. ..|
T Consensus 175 tC~w~~~g~~~vDa~~~~g~a~~~Sla~tfAsWGVDyLKyD~c~~~~------------~-----------~~----~ey 227 (633)
T PLN02899 175 ACAWMSHGFMSVNTKLGAGKAFLRSLYDQYAEWGVDFVKHDCVFGDD------------F-----------DL----EEI 227 (633)
T ss_pred ccccCCCCcccccccccchhhhhHHHHHHHHHhCCCEEEEcCCCCCC------------C-----------Ch----HHH
Confidence 001211 1123687888999999988888889999999999532100 0 00 112
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEcccccCCC----------ccceee--CCCCCCCchHHHHHHHHHH
Q 022976 156 GMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQ----------RYAATW--TGDNVSNWEHLHMSISMVL 213 (289)
Q Consensus 156 ~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~q----------ry~~~W--~GD~~s~W~~L~~~I~~~l 213 (289)
+++.+++++ ..||+++|=|- |.+ .++-.| +||...+|+.+...+..+-
T Consensus 228 -----~~ms~AL~a---TGRPIvySLsp--G~~~~p~wa~~v~~~aNmWRitgDI~D~W~sV~~~~d~~~ 287 (633)
T PLN02899 228 -----TYVSEVLKE---LDRPIVYSLSP--GTSATPTMAKEVSGLVNMYRITGDDWDTWGDVAAHFDVSR 287 (633)
T ss_pred -----HHHHHHHHH---hCCCeEEEecC--CcccchhhhhhhhccCccceecCCcccchHHHHHHHHHHH
Confidence 345667765 47999999763 333 122334 6999999999887765543
No 26
>PLN02229 alpha-galactosidase
Probab=98.15 E-value=5.9e-05 Score=71.87 Aligned_cols=138 Identities=18% Similarity=0.168 Sum_probs=90.3
Q ss_pred chhhccc-----CcccccCCCCCCC-hHHHHHHHHHCCCeEEEeeCCeeccCCCccccccccccceeeecCCCCceeeee
Q 022976 6 ILTTWMD-----FVVSLLTRHRFPD-PKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEV 79 (289)
Q Consensus 6 ~~~~w~d-----~~~f~~d~~~FPd-p~~~i~~L~~~g~k~~~~v~P~i~~~~~~~~y~~~~~~~~~v~~~~g~~~~~~~ 79 (289)
||.-|+. .+.+..|++|||+ .+.+.+++|++|+|+-++.++.+.+..+|
T Consensus 104 iDDgW~~~~rd~~G~l~~d~~rFP~G~k~ladyiH~~GlKfGIy~d~G~~TC~~~------------------------- 158 (427)
T PLN02229 104 IDDCWSNLKRDSKGQLVPDPKTFPSGIKLLADYVHSKGLKLGIYSDAGVFTCQVR------------------------- 158 (427)
T ss_pred EcCCcCCCCcCCCCCEEEChhhcCCcHHHHHHHHHHCCCceEEeccCCCcccCCC-------------------------
Confidence 6777864 6889999999998 79999999999999999999887654321
Q ss_pred cCCcccCCCCCCHHHHHHHHHHHHHHHhcCccEEEecCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHHH
Q 022976 80 WPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLM 159 (289)
Q Consensus 80 w~g~~~~~Dftnp~a~~ww~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~lp~~~~~~~~~~~g~~~~~~~~hN~y~~~~ 159 (289)
||. .++...+ .+.+-+.|||.+|.|...... ......|+
T Consensus 159 -pGS---~g~e~~D--------A~~fA~WGVDylK~D~C~~~~--------------------------~~~~~~y~--- 197 (427)
T PLN02229 159 -PGS---LFHEVDD--------ADIFASWGVDYLKYDNCYNLG--------------------------IKPIERYP--- 197 (427)
T ss_pred -CCC---ccHHHHH--------HHHHHHcCCCEEEecCCCCCC--------------------------cchhHHHH---
Confidence 122 1111111 233458999999999763210 01122333
Q ss_pred HHHHHHHHHhhcCCCCcEEEEcccccCC------Cccceee--CCCCCCCchHHHHHHHHHHH
Q 022976 160 ARSTYEGMKLADKDKRPFVLTRAGFIGS------QRYAATW--TGDNVSNWEHLHMSISMVLQ 214 (289)
Q Consensus 160 ~~a~~~~~~~~~~~~r~~~~sRs~~~G~------qry~~~W--~GD~~s~W~~L~~~I~~~l~ 214 (289)
++.+++++ ..||+++|=+.|.-. ..++..| +||...+|+++...+...-.
T Consensus 198 --~m~~AL~~---tGRpI~~SlC~WG~~~p~~w~~~~~n~WR~s~DI~d~W~sv~~i~~~~~~ 255 (427)
T PLN02229 198 --PMRDALNA---TGRSIFYSLCEWGVDDPALWAGKVGNSWRTTDDINDTWASMTTIADLNNK 255 (427)
T ss_pred --HHHHHHHh---hCCCcEEEecCCCCCCHHHHHHhhcCeeeccCCcccccccHHHHHHHHHH
Confidence 33456654 469999985544221 1233445 69999999998887765443
No 27
>PLN02692 alpha-galactosidase
Probab=98.10 E-value=0.00015 Score=68.80 Aligned_cols=139 Identities=19% Similarity=0.193 Sum_probs=91.3
Q ss_pred chhhccc-----CcccccCCCCCCC-hHHHHHHHHHCCCeEEEeeCCeeccCCCccccccccccceeeecCCCCceeeee
Q 022976 6 ILTTWMD-----FVVSLLTRHRFPD-PKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEV 79 (289)
Q Consensus 6 ~~~~w~d-----~~~f~~d~~~FPd-p~~~i~~L~~~g~k~~~~v~P~i~~~~~~~~y~~~~~~~~~v~~~~g~~~~~~~ 79 (289)
||+-|.. .+.+..|+++||+ .+.+.+.+|++|+|+-++.++.......
T Consensus 97 iDDgW~~~~rd~~G~~~~d~~kFP~G~k~ladyiH~~GLKfGIy~d~G~~tC~~-------------------------- 150 (412)
T PLN02692 97 IDDCWAEIARDEKGNLVPKKSTFPSGIKALADYVHSKGLKLGIYSDAGYFTCSK-------------------------- 150 (412)
T ss_pred EcCCcCCCCCCCCCCeeeChhhcCCcHHHHHHHHHHCCCceEEEecCCccccCC--------------------------
Confidence 7788874 7889999999999 6999999999999999988866433211
Q ss_pred cCCcccCCCCCCHHHHHHHHHHHHHHHhcCccEEEecCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHHH
Q 022976 80 WPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLM 159 (289)
Q Consensus 80 w~g~~~~~Dftnp~a~~ww~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~lp~~~~~~~~~~~g~~~~~~~~hN~y~~~~ 159 (289)
..|.+..+..+-.+.+.+.|||.+|.|..-... ......|.
T Consensus 151 ----------~~pGS~g~e~~DA~~fA~WGvDylK~D~C~~~~--------------------------~~~~~~y~--- 191 (412)
T PLN02692 151 ----------TMPGSLGHEEQDAKTFASWGIDYLKYDNCNNDG--------------------------SKPTVRYP--- 191 (412)
T ss_pred ----------CCCCchHHHHHHHHHHHhcCCCEEeccccCCCC--------------------------cchhHHHH---
Confidence 012234444444455668999999999753110 00112232
Q ss_pred HHHHHHHHHhhcCCCCcEEEEcccccCCC------ccceee--CCCCCCCchHHHHHHHHHHH
Q 022976 160 ARSTYEGMKLADKDKRPFVLTRAGFIGSQ------RYAATW--TGDNVSNWEHLHMSISMVLQ 214 (289)
Q Consensus 160 ~~a~~~~~~~~~~~~r~~~~sRs~~~G~q------ry~~~W--~GD~~s~W~~L~~~I~~~l~ 214 (289)
++.+++++ ..||+++|=+.|.-.. .++..| +||...+|+.+...+.....
T Consensus 192 --~m~~AL~~---tGRpI~~SlC~wg~~~p~~w~~~~~n~WR~s~DI~d~W~sv~~~~~~~~~ 249 (412)
T PLN02692 192 --VMTRALMK---AGRPIFFSLCEWGDMHPALWGSKVGNSWRTTNDISDTWDSMISRADMNEV 249 (412)
T ss_pred --HHHHHHHH---hCCCeEEEecCCCcCChhhhhhhcCCccccccccccchHhHHHHHHHHHH
Confidence 34456654 4699999865543222 223344 69999999988777755443
No 28
>PLN02808 alpha-galactosidase
Probab=97.98 E-value=0.00024 Score=67.07 Aligned_cols=140 Identities=19% Similarity=0.211 Sum_probs=90.8
Q ss_pred cchhhccc-----CcccccCCCCCCC-hHHHHHHHHHCCCeEEEeeCCeeccCCCccccccccccceeeecCCCCceeee
Q 022976 5 WILTTWMD-----FVVSLLTRHRFPD-PKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGE 78 (289)
Q Consensus 5 ~~~~~w~d-----~~~f~~d~~~FPd-p~~~i~~L~~~g~k~~~~v~P~i~~~~~~~~y~~~~~~~~~v~~~~g~~~~~~ 78 (289)
-||+-|.. .+.+..|++|||+ .+.+.+.+|++|+|+-++.++.......
T Consensus 72 ~iDd~W~~~~rd~~G~~~~d~~rFP~G~~~lad~iH~~GlkfGiy~~~G~~tC~~------------------------- 126 (386)
T PLN02808 72 NLDDCWAELKRDSQGNLVPKASTFPSGIKALADYVHSKGLKLGIYSDAGTLTCSK------------------------- 126 (386)
T ss_pred EEcCCcCCCCcCCCCCEeeChhhcCccHHHHHHHHHHCCCceEEEecCCccccCC-------------------------
Confidence 36778865 7889999999998 6999999999999999988875332211
Q ss_pred ecCCcccCCCCCCHHHHHHHHHHHHHHHhcCccEEEecCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHH
Q 022976 79 VWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGML 158 (289)
Q Consensus 79 ~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~lp~~~~~~~~~~~g~~~~~~~~hN~y~~~ 158 (289)
..|.+..+..+-.+.+.+.|||.+|.|..... . ...+..|.
T Consensus 127 -----------~~pGs~~~e~~DA~~fA~WGvDylK~D~C~~~----------~----------------~~~~~~y~-- 167 (386)
T PLN02808 127 -----------TMPGSLGHEEQDAKTFASWGIDYLKYDNCENT----------G----------------TSPQERYP-- 167 (386)
T ss_pred -----------CCCcchHHHHHHHHHHHHhCCCEEeecCcCCC----------C----------------ccHHHHHH--
Confidence 01222344444445566899999999975311 0 01123332
Q ss_pred HHHHHHHHHHhhcCCCCcEEEEcccccCC------Cccceee--CCCCCCCchHHHHHHHHHHH
Q 022976 159 MARSTYEGMKLADKDKRPFVLTRAGFIGS------QRYAATW--TGDNVSNWEHLHMSISMVLQ 214 (289)
Q Consensus 159 ~~~a~~~~~~~~~~~~r~~~~sRs~~~G~------qry~~~W--~GD~~s~W~~L~~~I~~~l~ 214 (289)
++.+++++ ..||+++|=+.|... ..++..| ++|...+|+.+...+.....
T Consensus 168 ---~m~~AL~~---tGRpi~~slc~wg~~~p~~w~~~~~n~WR~s~Di~d~W~~v~~~~~~~~~ 225 (386)
T PLN02808 168 ---KMSKALLN---SGRPIFFSLCEWGQEDPATWAGDIGNSWRTTGDIQDNWDSMTSRADQNDR 225 (386)
T ss_pred ---HHHHHHHH---hCCCeEEEecCCCCCCHHHHHHhhcCcccccCCcccchhhHHHHHHhhhh
Confidence 34456654 369999986543211 1122334 68999999988887765443
No 29
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=97.00 E-value=0.0036 Score=50.49 Aligned_cols=84 Identities=20% Similarity=0.311 Sum_probs=56.0
Q ss_pred HHHHHHHHHCCCeEEEeeCCeeccCCCccccccccccceeeecCCCCceeeeecCCc-ccCCCCCCHHHHHHHHHHHHHH
Q 022976 27 KSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGP-CVFPDYTQSKVRSWWGSLVKDF 105 (289)
Q Consensus 27 ~~~i~~L~~~g~k~~~~v~P~i~~~~~~~~y~~~~~~~~~v~~~~g~~~~~~~w~g~-~~~~Dftnp~a~~ww~~~~~~~ 105 (289)
.++|+.+|+.|+|++..++...... +++ .--..++++++|++......... -...-+ |..-++.-.++++.+
T Consensus 47 ge~v~a~h~~Girv~ay~~~~~d~~----~~~--~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~-ns~Y~e~~~~~i~Ei 119 (132)
T PF14871_consen 47 GEQVEACHERGIRVPAYFDFSWDED----AAE--RHPEWFVRDADGRPMRGERFGYPGWYTCCL-NSPYREFLLEQIREI 119 (132)
T ss_pred HHHHHHHHHCCCEEEEEEeeecChH----HHH--hCCceeeECCCCCCcCCCCcCCCCceecCC-CccHHHHHHHHHHHH
Confidence 7999999999999999988762221 222 23367888889886322221111 112333 344567778888888
Q ss_pred H-hcCccEEEecC
Q 022976 106 I-YNGVDGIWNDM 117 (289)
Q Consensus 106 ~-~~Gvdg~w~D~ 117 (289)
+ .+.+||+++|+
T Consensus 120 ~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 120 LDRYDVDGIFFDI 132 (132)
T ss_pred HHcCCCCEEEecC
Confidence 7 49999999996
No 30
>PRK03705 glycogen debranching enzyme; Provisional
Probab=96.63 E-value=0.01 Score=60.26 Aligned_cols=91 Identities=15% Similarity=0.234 Sum_probs=59.3
Q ss_pred ChHHHHHHHHHCCCeEEEeeCC-eecc---CCCccccccccccceeeecCCCCceeeeecCCcccCCCCCCHHHHHHHHH
Q 022976 25 DPKSLAADLHLNGFKAIWMLDP-GIKH---EDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGS 100 (289)
Q Consensus 25 dp~~~i~~L~~~g~k~~~~v~P-~i~~---~~~~~~y~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~ 100 (289)
+.++||+.+|++|++||+=|.. +... +..+..++......|+..+.+|. + ..|.+...-+++.||+++++..+
T Consensus 243 efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~-~--~~~~g~g~~ln~~~p~Vr~~iid 319 (658)
T PRK03705 243 EFRDAVKALHKAGIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGD-Y--HNWTGCGNTLNLSHPAVVDWAID 319 (658)
T ss_pred HHHHHHHHHHHCCCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCC-c--CCCCCccCcccCCCHHHHHHHHH
Confidence 3689999999999999987553 2221 11111222222234444444442 1 23444445688899999999999
Q ss_pred HHHHHH-hcCccEEEecCC
Q 022976 101 LVKDFI-YNGVDGIWNDMN 118 (289)
Q Consensus 101 ~~~~~~-~~Gvdg~w~D~~ 118 (289)
.++..+ ++|||||-+|..
T Consensus 320 ~l~~W~~e~gVDGFRfD~a 338 (658)
T PRK03705 320 CLRYWVETCHVDGFRFDLA 338 (658)
T ss_pred HHHHHHHHhCCCEEEEEcH
Confidence 998887 589999999954
No 31
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=96.47 E-value=0.014 Score=58.67 Aligned_cols=89 Identities=17% Similarity=0.148 Sum_probs=57.8
Q ss_pred ChHHHHHHHHHCCCeEEEeeCC-eeccCCCccccccccccceeee-cCCCCceeeeecCCcccCCCCCCHHHHHHHHHHH
Q 022976 25 DPKSLAADLHLNGFKAIWMLDP-GIKHEDGYFVYDSGSKIDVWIQ-KADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLV 102 (289)
Q Consensus 25 dp~~~i~~L~~~g~k~~~~v~P-~i~~~~~~~~y~~~~~~~~~v~-~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~ 102 (289)
+.++||+.+|++|++||+=+.+ +..... ...|+... ..+|.+ +.+|.... +.|.+.-++..+|+++++..+.+
T Consensus 230 efk~lV~~~H~~Gi~VilDvV~NH~~~~~-~~~f~~~~-~~~~~~~~~~g~~~~---~~g~~~~~~~~~~~v~~~i~~~~ 304 (605)
T TIGR02104 230 ELKQMIQALHENGIRVIMDVVYNHTYSRE-ESPFEKTV-PGYYYRYNEDGTLSN---GTGVGNDTASEREMMRKFIVDSV 304 (605)
T ss_pred HHHHHHHHHHHCCCEEEEEEEcCCccCCC-CCcccCCC-CCeeEEECCCCCccC---CCcccCCcccCCHHHHHHHHHHH
Confidence 3689999999999999987654 332211 11343322 244443 33443211 11223356788999999999998
Q ss_pred HHHH-hcCccEEEecCC
Q 022976 103 KDFI-YNGVDGIWNDMN 118 (289)
Q Consensus 103 ~~~~-~~Gvdg~w~D~~ 118 (289)
+..+ ++|||||-+|..
T Consensus 305 ~~W~~e~~iDGfR~D~~ 321 (605)
T TIGR02104 305 LYWVKEYNIDGFRFDLM 321 (605)
T ss_pred HHHHHHcCCCEEEEech
Confidence 8877 589999999965
No 32
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=96.43 E-value=0.0084 Score=53.92 Aligned_cols=95 Identities=23% Similarity=0.311 Sum_probs=57.6
Q ss_pred ChHHHHHHHHHCCCeEEEeeCC-eeccCCCcc----ccccccccceeeec-------------CCCCceeeeecC----C
Q 022976 25 DPKSLAADLHLNGFKAIWMLDP-GIKHEDGYF----VYDSGSKIDVWIQK-------------ADGTPFIGEVWP----G 82 (289)
Q Consensus 25 dp~~~i~~L~~~g~k~~~~v~P-~i~~~~~~~----~y~~~~~~~~~v~~-------------~~g~~~~~~~w~----g 82 (289)
+.++||+.+|++|+|||+=+.+ +.+.+...+ .+......++++-. .++..+....|. .
T Consensus 53 d~~~Lv~~~h~~gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (316)
T PF00128_consen 53 DFKELVDAAHKRGIKVILDVVPNHTSDDHPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQF 132 (316)
T ss_dssp HHHHHHHHHHHTTCEEEEEEETSEEETTSHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSS
T ss_pred hhhhhhhccccccceEEEeeeccccccccccccccccccccccccceeeccccccccccccccccccccccccccccccc
Confidence 3478999999999999987665 344332210 00011122333311 011222211121 1
Q ss_pred c--ccCCCCCCHHHHHHHHHHHHHHHhcCccEEEecCCC
Q 022976 83 P--CVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNE 119 (289)
Q Consensus 83 ~--~~~~Dftnp~a~~ww~~~~~~~~~~Gvdg~w~D~~E 119 (289)
. ..-+|+.||++++...+.++..++.|||||-+|...
T Consensus 133 ~~~~~dln~~n~~v~~~i~~~~~~w~~~giDGfR~D~~~ 171 (316)
T PF00128_consen 133 WSDLPDLNYENPEVREYIIDVLKFWIEEGIDGFRLDAAK 171 (316)
T ss_dssp STTSEEBETTSHHHHHHHHHHHHHHHHTTESEEEETTGG
T ss_pred ccccchhhhhhhhhhhhhcccccchhhceEeEEEEcccc
Confidence 1 234678899999999998888889999999999764
No 33
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=96.20 E-value=0.022 Score=61.61 Aligned_cols=94 Identities=15% Similarity=0.167 Sum_probs=59.6
Q ss_pred ChHHHHHHHHHCCCeEEEeeCC-eeccCCCcc---ccccccccceeeecCCCCceeeeecCCcccCCCCCCHHHHHHHHH
Q 022976 25 DPKSLAADLHLNGFKAIWMLDP-GIKHEDGYF---VYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGS 100 (289)
Q Consensus 25 dp~~~i~~L~~~g~k~~~~v~P-~i~~~~~~~---~y~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~ 100 (289)
+.++||+.+|++|++||+=+.+ +...+..+. .+.......||-.+. +.+..-..|.|.+..+|+.+|.++++..+
T Consensus 248 efk~lV~~~H~~GI~VILDvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~-~~~~~y~~~~G~gn~~n~~~p~v~~~i~d 326 (1221)
T PRK14510 248 EFAQAIKEAQSAGIAVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEP-GNPKEYENWWGCGNLPNLERPFILRLPMD 326 (1221)
T ss_pred HHHHHHHHHHHCCCEEEEEEccccccCCCCCCCcccccCCCCCCceEecC-CCCCcccCCCCCCCccccCCHHHHHHHHH
Confidence 4589999999999999987654 222211110 111111222332221 21111123446666799999999999999
Q ss_pred HHHHHHhcCccEEEecCCC
Q 022976 101 LVKDFIYNGVDGIWNDMNE 119 (289)
Q Consensus 101 ~~~~~~~~Gvdg~w~D~~E 119 (289)
.++..+++|||||-+|...
T Consensus 327 ~lr~Wv~~gVDGfRfDla~ 345 (1221)
T PRK14510 327 VLRSWAKRGVDGFRLDLAD 345 (1221)
T ss_pred HHHHHHHhCCCEEEEechh
Confidence 9998888999999999543
No 34
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=96.20 E-value=0.028 Score=57.42 Aligned_cols=93 Identities=13% Similarity=0.120 Sum_probs=58.1
Q ss_pred ChHHHHHHHHHCCCeEEEeeCCe-eccCC---CccccccccccceeeecCCC-CceeeeecCCcccCCCCCCHHHHHHHH
Q 022976 25 DPKSLAADLHLNGFKAIWMLDPG-IKHED---GYFVYDSGSKIDVWIQKADG-TPFIGEVWPGPCVFPDYTQSKVRSWWG 99 (289)
Q Consensus 25 dp~~~i~~L~~~g~k~~~~v~P~-i~~~~---~~~~y~~~~~~~~~v~~~~g-~~~~~~~w~g~~~~~Dftnp~a~~ww~ 99 (289)
+.++||+.+|++|++||+=+.+. ..... ....|+......+|-.+++. ..+ ..|-|.+.-+|+.+|+++++..
T Consensus 246 efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~--~~~~g~gn~ln~~~p~vr~~i~ 323 (688)
T TIGR02100 246 EFKTMVRALHDAGIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYY--INDTGTGNTLNLSHPRVLQMVM 323 (688)
T ss_pred HHHHHHHHHHHCCCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCcee--cCCCCccccccCCCHHHHHHHH
Confidence 45899999999999999876542 22111 01112211112233333321 111 1233444568999999999999
Q ss_pred HHHHHHH-hcCccEEEecCCC
Q 022976 100 SLVKDFI-YNGVDGIWNDMNE 119 (289)
Q Consensus 100 ~~~~~~~-~~Gvdg~w~D~~E 119 (289)
+.++..+ ++|||||-+|...
T Consensus 324 d~l~~W~~e~gIDGfR~D~a~ 344 (688)
T TIGR02100 324 DSLRYWVTEMHVDGFRFDLAT 344 (688)
T ss_pred HHHHHHHHHcCCcEEEEechh
Confidence 9888877 6999999999654
No 35
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=96.19 E-value=0.02 Score=56.86 Aligned_cols=91 Identities=15% Similarity=0.214 Sum_probs=56.2
Q ss_pred hHHHHHHHHHCCCeEEEeeCCe-eccCCCccccccc------cccceeeecCCCCceee----------eecC-------
Q 022976 26 PKSLAADLHLNGFKAIWMLDPG-IKHEDGYFVYDSG------SKIDVWIQKADGTPFIG----------EVWP------- 81 (289)
Q Consensus 26 p~~~i~~L~~~g~k~~~~v~P~-i~~~~~~~~y~~~------~~~~~~v~~~~g~~~~~----------~~w~------- 81 (289)
.+.||+++|++|+|||+=+.+. ++.+. +.|+++ .-.++|+....++.+.. ..|.
T Consensus 78 f~~Lv~~ah~~Gi~vilD~V~NH~s~~~--~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 155 (539)
T TIGR02456 78 FKDFVDEAHARGMRVIIDLVLNHTSDQH--PWFQEARSNPDGPYRDFYVWSDTDEKYKDTRIIFVDTEKSNWTFDPVAKQ 155 (539)
T ss_pred HHHHHHHHHHCCCEEEEEeccCcCCCCC--HHHHHHhhCCCCCCCceEEecCCCcccccccccccccCCCCccccCCcCe
Confidence 3789999999999999875543 32221 122211 11244443222221110 1121
Q ss_pred -------CcccCCCCCCHHHHHHHHHHHHHHHhcCccEEEecCC
Q 022976 82 -------GPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMN 118 (289)
Q Consensus 82 -------g~~~~~Dftnp~a~~ww~~~~~~~~~~Gvdg~w~D~~ 118 (289)
....-+|+.||++++...+.++..++.|||||-+|..
T Consensus 156 ~y~~~f~~~~pdln~~np~vr~~l~~~~~~w~~~GvDGfRlDav 199 (539)
T TIGR02456 156 YYWHRFFSHQPDLNYDNPAVHDAVHDVMRFWLDLGVDGFRLDAV 199 (539)
T ss_pred eEEecccCCCCccCCCCHHHHHHHHHHHHHHHHcCCCEEEEecH
Confidence 0123478889999999999889888999999999974
No 36
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=96.15 E-value=0.022 Score=57.48 Aligned_cols=91 Identities=20% Similarity=0.252 Sum_probs=56.8
Q ss_pred CCCCh---HHHHHHHHHCCCeEEEeeCC-eeccCCCc-cccccccccceeeecCCCCceeeeecCCcccCCCCCCHHHHH
Q 022976 22 RFPDP---KSLAADLHLNGFKAIWMLDP-GIKHEDGY-FVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRS 96 (289)
Q Consensus 22 ~FPdp---~~~i~~L~~~g~k~~~~v~P-~i~~~~~~-~~y~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ 96 (289)
+|-.+ ++||+.+|++|++||+-+.+ +...+... ..|+. . .-++..++.. .. ...| | ..-+|+.||++++
T Consensus 201 ~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~-~-~~y~~~~~~~-~~-~~~w-~-~~~~~~~~~~Vr~ 274 (613)
T TIGR01515 201 RFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDDHGLAEFDG-T-PLYEHKDPRD-GE-HWDW-G-TLIFDYGRPEVRN 274 (613)
T ss_pred ccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCccchhhccCC-C-cceeccCCcc-Cc-CCCC-C-CceecCCCHHHHH
Confidence 56644 78999999999999998665 33332211 11110 0 0111111110 00 1123 2 2357999999999
Q ss_pred HHHHHHHHHH-hcCccEEEecCC
Q 022976 97 WWGSLVKDFI-YNGVDGIWNDMN 118 (289)
Q Consensus 97 ww~~~~~~~~-~~Gvdg~w~D~~ 118 (289)
+..+.++..+ +.|||||-+|..
T Consensus 275 ~l~~~~~~W~~ey~iDG~R~D~v 297 (613)
T TIGR01515 275 FLVANALYWAEFYHIDGLRVDAV 297 (613)
T ss_pred HHHHHHHHHHHHhCCcEEEEcCH
Confidence 9999998887 589999999974
No 37
>PRK10785 maltodextrin glucosidase; Provisional
Probab=95.92 E-value=0.039 Score=55.55 Aligned_cols=90 Identities=17% Similarity=0.187 Sum_probs=56.2
Q ss_pred ChHHHHHHHHHCCCeEEEeeCC-eeccCCCcccccc-------------ccccceeeecCCCCceeeeecCCcccCC--C
Q 022976 25 DPKSLAADLHLNGFKAIWMLDP-GIKHEDGYFVYDS-------------GSKIDVWIQKADGTPFIGEVWPGPCVFP--D 88 (289)
Q Consensus 25 dp~~~i~~L~~~g~k~~~~v~P-~i~~~~~~~~y~~-------------~~~~~~~v~~~~g~~~~~~~w~g~~~~~--D 88 (289)
+.++|++++|++|+|||+=+.+ +...+.. .|+. ....++|.-+.+|. + ..|.|....| |
T Consensus 227 df~~Lv~~aH~rGikVilD~V~NH~~~~~~--~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~-~--~~w~g~~~lPdLN 301 (598)
T PRK10785 227 ALLRLRHATQQRGMRLVLDGVFNHTGDSHP--WFDRHNRGTGGACHHPDSPWRDWYSFSDDGR-A--LDWLGYASLPKLD 301 (598)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCcCCCCCH--HHHHhhccccccccCCCCCcceeeEECCCCC-c--CCcCCCCcCcccc
Confidence 3478999999999999987654 2222211 1221 11224444443332 1 3565654444 5
Q ss_pred CCCHHHHHHHHH----HHHHHHh--cCccEEEecCCC
Q 022976 89 YTQSKVRSWWGS----LVKDFIY--NGVDGIWNDMNE 119 (289)
Q Consensus 89 ftnp~a~~ww~~----~~~~~~~--~Gvdg~w~D~~E 119 (289)
+.||++++...+ .++..++ .|||||-+|...
T Consensus 302 ~~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva~ 338 (598)
T PRK10785 302 FQSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVVH 338 (598)
T ss_pred CCCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecHh
Confidence 679999998764 5666665 599999999763
No 38
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=95.90 E-value=0.043 Score=50.67 Aligned_cols=88 Identities=17% Similarity=0.110 Sum_probs=60.3
Q ss_pred CCChHHHHHHHHHCCCeEEEeeCCeeccCCCccccccccccceeeecCCCCceeeeecCCcccCCCCCCHHHHHHHHHHH
Q 022976 23 FPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLV 102 (289)
Q Consensus 23 FPdp~~~i~~L~~~g~k~~~~v~P~i~~~~~~~~y~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~ 102 (289)
..|++++++.||++|+.+|..|.-+= +. ..-+. ...+-+++.+|+++.. . ....++|-++++++++-.+.-
T Consensus 60 i~D~~~l~~~l~e~gIY~IARIv~Fk--D~---~la~~-~pe~av~~~~G~~w~d--~-~~~~WvnP~~~evw~Y~i~IA 130 (316)
T PF13200_consen 60 IKDLKALVKKLKEHGIYPIARIVVFK--DP---VLAEA-HPEWAVKTKDGSVWRD--N-EGEAWVNPYSKEVWDYNIDIA 130 (316)
T ss_pred ccCHHHHHHHHHHCCCEEEEEEEEec--Ch---HHhhh-ChhhEEECCCCCcccC--C-CCCccCCCCCHHHHHHHHHHH
Confidence 48999999999999999886654321 11 01011 1234445666644321 0 124689999999999998888
Q ss_pred HHHHhcCccEEEecCCC
Q 022976 103 KDFIYNGVDGIWNDMNE 119 (289)
Q Consensus 103 ~~~~~~Gvdg~w~D~~E 119 (289)
+.+.+.|||.+-+|.--
T Consensus 131 ~Eaa~~GFdEIqfDYIR 147 (316)
T PF13200_consen 131 KEAAKLGFDEIQFDYIR 147 (316)
T ss_pred HHHHHcCCCEEEeeeee
Confidence 88889999999999543
No 39
>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism]
Probab=95.62 E-value=0.018 Score=56.15 Aligned_cols=106 Identities=19% Similarity=0.229 Sum_probs=69.8
Q ss_pred chhhcc-----c---CcccccCCCCCCC-hHHHHHHHHHCCCeEEEeeCCeeccCCCccccccccccceeeecCCCCcee
Q 022976 6 ILTTWM-----D---FVVSLLTRHRFPD-PKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFI 76 (289)
Q Consensus 6 ~~~~w~-----d---~~~f~~d~~~FPd-p~~~i~~L~~~g~k~~~~v~P~i~~~~~~~~y~~~~~~~~~v~~~~g~~~~ 76 (289)
||+.|. | .+|+-.|.++||. .++|++.++++|++..+|+.|.+...+ .++|+.= -+..|| .+|.|..
T Consensus 328 lDDGwfg~rndd~~slGDWlv~seKfPsgiE~li~~I~e~Gl~fGIWlePemvs~d-SdlfrqH--PDWvvk-~~G~p~~ 403 (687)
T COG3345 328 LDDGWFGGRNDDLKSLGDWLVNSEKFPSGIEELIEAIAENGLIFGIWLEPEMVSED-SDLFRQH--PDWVVK-VNGYPLM 403 (687)
T ss_pred EccccccccCcchhhhhceecchhhccccHHHHHHHHHHcCCccceeecchhcccc-hHHHhhC--CCeEEe-cCCcccc
Confidence 566776 2 8899999999999 799999999999999999999875533 3467643 245555 6676654
Q ss_pred eeecCCcccCCCCCCHHHHHHHHHHHHHH-HhcCccEEEecCC
Q 022976 77 GEVWPGPCVFPDYTQSKVRSWWGSLVKDF-IYNGVDGIWNDMN 118 (289)
Q Consensus 77 ~~~w~g~~~~~Dftnp~a~~ww~~~~~~~-~~~Gvdg~w~D~~ 118 (289)
.. -....+|+.||.....-.+.+..+ +..-||-++=|||
T Consensus 404 ~~---Rnqyvl~~s~p~vv~~l~~~l~qll~~~~v~ylkwdmn 443 (687)
T COG3345 404 AG---RNQYVLWLSNPIVVLDLSEDLVQLLLFHLVSYLKWDMN 443 (687)
T ss_pred cc---ccchhhhccChHHHHHhhhHHHHHHHhhhHHHHHHHhC
Confidence 31 123445666776665555444322 2334555555554
No 40
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=95.59 E-value=0.057 Score=49.86 Aligned_cols=89 Identities=18% Similarity=0.196 Sum_probs=55.4
Q ss_pred hHHHHHHHHHCCCeEEEeeCCeeccCCCccccccccccceeeecCCCCceeeeecCCcccCCCCCCHHHHHHHHHHHHHH
Q 022976 26 PKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDF 105 (289)
Q Consensus 26 p~~~i~~L~~~g~k~~~~v~P~i~~~~~~~~y~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~ 105 (289)
++.||++-|++|+++-.|+...+.......+.+... ..+.++..|.......-.+...++|-.+|+++++-.+.++.+
T Consensus 72 L~~~I~eaHkrGlevHAW~~~~~~~~~~~~~~~~~p--~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Ei 149 (311)
T PF02638_consen 72 LEFMIEEAHKRGLEVHAWFRVGFNAPDVSHILKKHP--EWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEI 149 (311)
T ss_pred HHHHHHHHHHcCCEEEEEEEeecCCCchhhhhhcCc--hhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHH
Confidence 389999999999999988833332221111111111 111112222111110012445689999999999999999988
Q ss_pred H-hcCccEEEec
Q 022976 106 I-YNGVDGIWND 116 (289)
Q Consensus 106 ~-~~Gvdg~w~D 116 (289)
+ ++.|||+-+|
T Consensus 150 v~~YdvDGIhlD 161 (311)
T PF02638_consen 150 VKNYDVDGIHLD 161 (311)
T ss_pred HhcCCCCeEEec
Confidence 7 7999999999
No 41
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=95.58 E-value=0.12 Score=51.53 Aligned_cols=81 Identities=17% Similarity=0.195 Sum_probs=53.2
Q ss_pred hHHHHHHHHHCCCeEEEeeCC-eeccCCCccccccccccceeeecCCCCceeeeecCCcccCCCCCCH---HHHHHHHHH
Q 022976 26 PKSLAADLHLNGFKAIWMLDP-GIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQS---KVRSWWGSL 101 (289)
Q Consensus 26 p~~~i~~L~~~g~k~~~~v~P-~i~~~~~~~~y~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp---~a~~ww~~~ 101 (289)
.++||+.+|++|++||+=+.+ +...+..|. ..- . .+|-.. . ...| | .-+|+.+| +++++..+.
T Consensus 162 ~k~lV~~aH~~Gi~VilD~V~NH~~~~~~~~--~~~-~-~y~~~~--~----~~~w-g--~~~n~~~~~~~~vr~~i~~~ 228 (542)
T TIGR02402 162 LKALVDAAHGLGLGVILDVVYNHFGPEGNYL--PRY-A-PYFTDR--Y----STPW-G--AAINFDGPGSDEVRRYILDN 228 (542)
T ss_pred HHHHHHHHHHCCCEEEEEEccCCCCCccccc--ccc-C-ccccCC--C----CCCC-C--CccccCCCcHHHHHHHHHHH
Confidence 378999999999999987654 333222221 110 1 133211 1 1233 2 24899999 999999998
Q ss_pred HHHHH-hcCccEEEecCCC
Q 022976 102 VKDFI-YNGVDGIWNDMNE 119 (289)
Q Consensus 102 ~~~~~-~~Gvdg~w~D~~E 119 (289)
++..+ ++|||||-+|...
T Consensus 229 ~~~W~~e~~iDGfR~D~~~ 247 (542)
T TIGR02402 229 ALYWLREYHFDGLRLDAVH 247 (542)
T ss_pred HHHHHHHhCCcEEEEeCHH
Confidence 88877 6899999999653
No 42
>PLN00196 alpha-amylase; Provisional
Probab=95.57 E-value=0.11 Score=50.23 Aligned_cols=103 Identities=18% Similarity=0.146 Sum_probs=57.1
Q ss_pred cccCCCCCCC---hHHHHHHHHHCCCeEEEeeCCe-eccCC-----Cccccccccc---cceeee--cCCCCcee---e-
Q 022976 16 SLLTRHRFPD---PKSLAADLHLNGFKAIWMLDPG-IKHED-----GYFVYDSGSK---IDVWIQ--KADGTPFI---G- 77 (289)
Q Consensus 16 f~~d~~~FPd---p~~~i~~L~~~g~k~~~~v~P~-i~~~~-----~~~~y~~~~~---~~~~v~--~~~g~~~~---~- 77 (289)
+..|+.+|-. .++||+.+|++|+|+|+=+.+. ...+. .|..|..+.. .+.+-. ..+.+.+. +
T Consensus 81 y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~~~~~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 160 (428)
T PLN00196 81 YDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRTAEHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGN 160 (428)
T ss_pred CCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccCcccccccCCCceEECCCCCCCCccccccccCCCCcccccCCCCc
Confidence 5666667764 4789999999999998865432 22111 0111211111 011000 00000010 0
Q ss_pred -eecCCcccC--CCCCCHHHHHHHHHHHHHHH-hcCccEEEecCC
Q 022976 78 -EVWPGPCVF--PDYTQSKVRSWWGSLVKDFI-YNGVDGIWNDMN 118 (289)
Q Consensus 78 -~~w~g~~~~--~Dftnp~a~~ww~~~~~~~~-~~Gvdg~w~D~~ 118 (289)
..|.+.... +|.+||++++...+.++-+. +.|||||-+|..
T Consensus 161 ~~~~~~~~~lpDLn~~np~V~~~l~~~~~wl~~~~GiDG~RlD~a 205 (428)
T PLN00196 161 LDTGADFAAAPDIDHLNKRVQRELIGWLLWLKSDIGFDAWRLDFA 205 (428)
T ss_pred eeCCCCCCCCCccCCCCHHHHHHHHHHHHHHhhCCCCCEEEeehh
Confidence 112222333 56679999999888776665 699999999976
No 43
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=95.55 E-value=0.061 Score=57.45 Aligned_cols=85 Identities=21% Similarity=0.166 Sum_probs=58.0
Q ss_pred hHHHHHHHHHCCCeEEEeeCC-eeccCCCccccccccccceeee-cCCCCceeeeecCCcccCCCCCCHHHHHHHHHHHH
Q 022976 26 PKSLAADLHLNGFKAIWMLDP-GIKHEDGYFVYDSGSKIDVWIQ-KADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVK 103 (289)
Q Consensus 26 p~~~i~~L~~~g~k~~~~v~P-~i~~~~~~~~y~~~~~~~~~v~-~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~ 103 (289)
.++||+.||++|++||+=|.+ +..... .|+... .+||.. +.+|.+.. .|. +.-++..+|.++++..+.++
T Consensus 557 fK~LV~alH~~GI~VILDVVyNHt~~~~---~f~~~~-p~Yy~~~~~~G~~~~--~~~--g~~l~~e~~~vrk~iiDsl~ 628 (1111)
T TIGR02102 557 FKNLINEIHKRGMGVILDVVYNHTAKVY---IFEDLE-PNYYHFMDADGTPRT--SFG--GGRLGTTHEMSRRILVDSIK 628 (1111)
T ss_pred HHHHHHHHHHCCCEEEEecccccccccc---cccccC-CCceEeeCCCCCccc--ccC--CCCCCcCCHHHHHHHHHHHH
Confidence 589999999999999987654 222221 344332 244433 34555432 222 23477889999999999988
Q ss_pred HHH-hcCccEEEecCC
Q 022976 104 DFI-YNGVDGIWNDMN 118 (289)
Q Consensus 104 ~~~-~~Gvdg~w~D~~ 118 (289)
..+ ++|||||-+|..
T Consensus 629 yWv~ey~VDGFRfDl~ 644 (1111)
T TIGR02102 629 YLVDEFKVDGFRFDMM 644 (1111)
T ss_pred HHHHhcCCcEEEEecc
Confidence 877 689999999954
No 44
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=95.49 E-value=0.066 Score=54.44 Aligned_cols=90 Identities=17% Similarity=0.135 Sum_probs=61.8
Q ss_pred hHHHHHHHHHCCCeEEEeeC-Ceecc---CCCccccccccccc-eeeecCCCCceeeeecCCcccCCCCCCHHHHHHHHH
Q 022976 26 PKSLAADLHLNGFKAIWMLD-PGIKH---EDGYFVYDSGSKID-VWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGS 100 (289)
Q Consensus 26 p~~~i~~L~~~g~k~~~~v~-P~i~~---~~~~~~y~~~~~~~-~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~ 100 (289)
.|.||+.||+.|+.||+=|. .+... ..+-..|+ +...+ |+-.+++|.. ..+.|.+--++-++|-+++|--+
T Consensus 267 fK~mV~~lHkaGI~VILDVVfNHTae~~~~g~t~~f~-~id~~~Yyr~~~dg~~---~N~TGcGNtln~~hpmvrk~ivD 342 (697)
T COG1523 267 FKDMVKALHKAGIEVILDVVFNHTAEGNELGPTLSFR-GIDPNYYYRLDPDGYY---SNGTGCGNTLNTEHPMVRKLIVD 342 (697)
T ss_pred HHHHHHHHHHcCCEEEEEEeccCcccccCcCcccccc-cCCcCceEEECCCCCe---ecCCccCcccccCChHHHHHHHH
Confidence 37899999999999998653 22211 01112343 44444 4444556532 22445566788899999999999
Q ss_pred HHHHHH-hcCccEEEecCCC
Q 022976 101 LVKDFI-YNGVDGIWNDMNE 119 (289)
Q Consensus 101 ~~~~~~-~~Gvdg~w~D~~E 119 (289)
.|+..+ +++||||-+|..-
T Consensus 343 sLrYWv~e~hVDGFRFDLa~ 362 (697)
T COG1523 343 SLRYWVEEYHVDGFRFDLAG 362 (697)
T ss_pred HHHHHHHHhCCCceeecchh
Confidence 999887 7999999999873
No 45
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=95.34 E-value=0.081 Score=52.71 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=30.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCccEEEecCCC
Q 022976 86 FPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNE 119 (289)
Q Consensus 86 ~~Dftnp~a~~ww~~~~~~~~~~Gvdg~w~D~~E 119 (289)
-+|+.||++++...+.++..++.|||||-+|...
T Consensus 170 dLn~~np~V~~~l~~~~~~W~~~GvDGfRlDa~~ 203 (551)
T PRK10933 170 DLNWENPAVRAELKKVCEFWADRGVDGLRLDVVN 203 (551)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHCCCcEEEEcchh
Confidence 5677899999999999998889999999999654
No 46
>KOG2366 consensus Alpha-D-galactosidase (melibiase) [Carbohydrate transport and metabolism]
Probab=95.30 E-value=0.12 Score=48.45 Aligned_cols=173 Identities=23% Similarity=0.303 Sum_probs=101.8
Q ss_pred chhhccc-----CcccccCCCCCCCh-HHHHHHHHHCCCeEEEeeCCeeccCCCccccccccccceeeecCCCCceeeee
Q 022976 6 ILTTWMD-----FVVSLLTRHRFPDP-KSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEV 79 (289)
Q Consensus 6 ~~~~w~d-----~~~f~~d~~~FPdp-~~~i~~L~~~g~k~~~~v~P~i~~~~~~~~y~~~~~~~~~v~~~~g~~~~~~~ 79 (289)
||+-|++ -+-..=|+++||.- +++.+.+|.+|.|+.+..+-.-.+..+
T Consensus 84 iDDCW~e~~Rd~~grLva~~~rFP~Gi~~ladyvHs~GLKlGiYsD~G~~TC~g-------------------------- 137 (414)
T KOG2366|consen 84 IDDCWSEVTRDSDGRLVADPSRFPSGIKALADYVHSKGLKLGIYSDAGNFTCAG-------------------------- 137 (414)
T ss_pred chhhhhhhccCCccccccChhhcccchhhhhhchhhcCCceeeeeccCchhhcc--------------------------
Confidence 6778888 23356788999997 899999999999998865533111111
Q ss_pred cCCcccCCCCCCHHHHHHHHHHHHHHHhcCccEEEecCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHHH
Q 022976 80 WPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLM 159 (289)
Q Consensus 80 w~g~~~~~Dftnp~a~~ww~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~lp~~~~~~~~~~~g~~~~~~~~hN~y~~~~ 159 (289)
.||. +...- .--+-+.+-|||-.++|...... ..+.-.|+.+
T Consensus 138 ~PGS---~~~e~--------~DA~tFA~WgvDylKlD~C~~~~--------------------------~~~~~~Yp~m- 179 (414)
T KOG2366|consen 138 YPGS---LGHEE--------SDAKTFADWGVDYLKLDGCFNNL--------------------------ITMPEGYPIM- 179 (414)
T ss_pred CCcc---cchhh--------hhhhhhHhhCCcEEecccccccc--------------------------ccccccchhH-
Confidence 1221 11000 01134568999999999775321 0111223331
Q ss_pred HHHHHHHHHhhcCCCCcEEEE-ccc---ccC---------CCccceee--CCCCCCCchHHHHHHHHHHHhhccCCCccc
Q 022976 160 ARSTYEGMKLADKDKRPFVLT-RAG---FIG---------SQRYAATW--TGDNVSNWEHLHMSISMVLQLGLSGQPFSG 224 (289)
Q Consensus 160 ~~a~~~~~~~~~~~~r~~~~s-Rs~---~~G---------~qry~~~W--~GD~~s~W~~L~~~I~~~l~~~l~G~p~~g 224 (289)
+ .+++ ..+||++.| ++- ..+ .+.++..| .+|...+|..+...|...-...=.=.|.-|
T Consensus 180 s----~aLN---~tGrpi~ySlC~W~~~~~~~~~~pny~~i~~~~N~WR~~dDI~dtW~Sv~~I~d~~~~nqd~~~~~ag 252 (414)
T KOG2366|consen 180 S----RALN---NTGRPIFYSLCSWPAYHPGLPHHPNYKNISTICNSWRTTDDIQDTWKSVDSIIDYICWNQDRIAPLAG 252 (414)
T ss_pred H----HHHh---ccCCceEEEeccCcccccCccCCCcchhhhhhhccccchhhhhhHHHHHHHHHHHHhhhhhhhccccC
Confidence 1 2333 367999999 541 112 22334455 488889998876666655445555567777
Q ss_pred cCCCCCCC-------C--CChhHHHHHHHhhhh----ccccc
Q 022976 225 PDIGGFDG-------N--ATPRLFGRWMGIGAM----FPFCR 253 (289)
Q Consensus 225 ~DIgGf~g-------~--~~~EL~~RW~Q~g~f----~P~~R 253 (289)
| ||+.- + -+.|+|. .||+.. .|+..
T Consensus 253 P--g~WNDpDmL~iGN~G~s~e~y~--~qf~lWai~kAPLlm 290 (414)
T KOG2366|consen 253 P--GGWNDPDMLEIGNGGMSYEEYK--GQFALWAILKAPLLM 290 (414)
T ss_pred C--CCCCChhHhhcCCCCccHHHHH--HHHHHHHHhhchhhh
Confidence 7 77642 2 3678887 555544 46653
No 47
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=95.00 E-value=0.093 Score=52.21 Aligned_cols=93 Identities=19% Similarity=0.250 Sum_probs=55.6
Q ss_pred ChHHHHHHHHHCCCeEEEeeCC-eeccCCCcccccccc-----ccceeeec-CCCCc---e----eeeecCCc-------
Q 022976 25 DPKSLAADLHLNGFKAIWMLDP-GIKHEDGYFVYDSGS-----KIDVWIQK-ADGTP---F----IGEVWPGP------- 83 (289)
Q Consensus 25 dp~~~i~~L~~~g~k~~~~v~P-~i~~~~~~~~y~~~~-----~~~~~v~~-~~g~~---~----~~~~w~g~------- 83 (289)
+.+.||+.+|++|+|||+=+.| +.+.+.. -+.++. -.++|+-. ..|.+ + -+..|...
T Consensus 76 ~~~~lv~~ah~~gi~vilD~v~NH~~~~~~--~f~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y 153 (543)
T TIGR02403 76 DFEELVSEAKKRNIKIMLDMVFNHTSTEHE--WFKKALAGDSPYRDFYIWRDPKGKPPTNWQSKFGGSAWEYFGDTGQYY 153 (543)
T ss_pred HHHHHHHHHHHCCCEEEEEECccccccchH--HHHHhhcCCCcccCceEecCCCCCCCCcccccCCCcCccccCCCCceE
Confidence 3478999999999999987654 2322211 111111 12333221 11111 0 01123211
Q ss_pred -------ccCCCCCCHHHHHHHHHHHHHHHhcCccEEEecCCC
Q 022976 84 -------CVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNE 119 (289)
Q Consensus 84 -------~~~~Dftnp~a~~ww~~~~~~~~~~Gvdg~w~D~~E 119 (289)
..-+|+.||++++...+.++..++.|||||-+|...
T Consensus 154 ~~~f~~~~pdln~~np~v~~~i~~~~~~W~~~giDGfRlDa~~ 196 (543)
T TIGR02403 154 LHLFDKTQADLNWENPEVREELKDVVNFWRDKGVDGFRLDVIN 196 (543)
T ss_pred EeccCCcCCccCCCCHHHHHHHHHHHHHHHHcCCCEEEEeeeh
Confidence 234678899999999988888889999999999664
No 48
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=94.97 E-value=0.079 Score=54.39 Aligned_cols=96 Identities=18% Similarity=0.209 Sum_probs=62.8
Q ss_pred CCCCCh---HHHHHHHHHCCCeEEEeeCC-eeccCC--CccccccccccceeeecCCCCceeeeecCCcccCCCCCCHHH
Q 022976 21 HRFPDP---KSLAADLHLNGFKAIWMLDP-GIKHED--GYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKV 94 (289)
Q Consensus 21 ~~FPdp---~~~i~~L~~~g~k~~~~v~P-~i~~~~--~~~~y~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a 94 (289)
.+|-.| +.||+.+|++|++|++=+.| ++..+. +...|+ +....||-.+..|. ...| + +..+|+.++++
T Consensus 294 ~~~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~~~~~~gl~~fD-g~~~~Yf~~~~~g~---~~~w-~-~~~~N~~~~eV 367 (758)
T PLN02447 294 SRSGTPEDLKYLIDKAHSLGLRVLMDVVHSHASKNTLDGLNGFD-GTDGSYFHSGPRGY---HWLW-D-SRLFNYGNWEV 367 (758)
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEeccccccccccccccccC-CCCccccccCCCCC---cCcC-C-CceecCCCHHH
Confidence 356555 78999999999999987655 333321 111232 33334443332221 1234 2 34689999999
Q ss_pred HHHHHHHHHHHH-hcCccEEEecCCCCcc
Q 022976 95 RSWWGSLVKDFI-YNGVDGIWNDMNEPAV 122 (289)
Q Consensus 95 ~~ww~~~~~~~~-~~Gvdg~w~D~~E~~~ 122 (289)
+++..+.++..+ +++||||-+|...-..
T Consensus 368 r~fLl~~~~~Wl~ey~IDGfRfDaV~sml 396 (758)
T PLN02447 368 LRFLLSNLRWWLEEYKFDGFRFDGVTSML 396 (758)
T ss_pred HHHHHHHHHHHHHHhCcccccccchhhhh
Confidence 999999888877 5899999999876443
No 49
>PRK14705 glycogen branching enzyme; Provisional
Probab=94.93 E-value=0.25 Score=53.38 Aligned_cols=93 Identities=20% Similarity=0.297 Sum_probs=57.8
Q ss_pred CCCCh---HHHHHHHHHCCCeEEEeeCCe-eccCCCc-cccccccccceeeecCCCCceeeeecCCcccCCCCCCHHHHH
Q 022976 22 RFPDP---KSLAADLHLNGFKAIWMLDPG-IKHEDGY-FVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRS 96 (289)
Q Consensus 22 ~FPdp---~~~i~~L~~~g~k~~~~v~P~-i~~~~~~-~~y~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ 96 (289)
+|-.| +.||+.+|++|++||+=+.|. ...+... ..|+ + ..+....|...-....|.. ..+||.++++++
T Consensus 810 ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~~~l~~fd-g---~~~y~~~d~~~g~~~~Wg~--~~fn~~~~eVr~ 883 (1224)
T PRK14705 810 RFGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDSWALAQFD-G---QPLYEHADPALGEHPDWGT--LIFDFGRTEVRN 883 (1224)
T ss_pred ccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcchhhhhhcC-C---CcccccCCcccCCCCCCCC--ceecCCCHHHHH
Confidence 45555 789999999999999876653 3322110 0111 0 1111111211101123532 348999999999
Q ss_pred HHHHHHHHHH-hcCccEEEecCCCC
Q 022976 97 WWGSLVKDFI-YNGVDGIWNDMNEP 120 (289)
Q Consensus 97 ww~~~~~~~~-~~Gvdg~w~D~~E~ 120 (289)
+..+.+...+ +++||||-+|.-.-
T Consensus 884 fli~~a~~Wl~eyhiDGfR~Dav~~ 908 (1224)
T PRK14705 884 FLVANALYWLDEFHIDGLRVDAVAS 908 (1224)
T ss_pred HHHHHHHHHHHHhCCCcEEEeehhh
Confidence 9998888877 58999999998643
No 50
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=94.83 E-value=0.12 Score=54.01 Aligned_cols=89 Identities=11% Similarity=0.013 Sum_probs=55.8
Q ss_pred ChHHHHHHHHHCCCeEEEeeCC-eeccCCC--ccccccccccceeeecC-CCCceeeeecCCcccCCCCCCHHHHHHHHH
Q 022976 25 DPKSLAADLHLNGFKAIWMLDP-GIKHEDG--YFVYDSGSKIDVWIQKA-DGTPFIGEVWPGPCVFPDYTQSKVRSWWGS 100 (289)
Q Consensus 25 dp~~~i~~L~~~g~k~~~~v~P-~i~~~~~--~~~y~~~~~~~~~v~~~-~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~ 100 (289)
+.++||+.||++|++||+=|.. +...+.. ...++.. ..+||.+.. +|......++ .-.+..||.++++..+
T Consensus 405 Efk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~-~P~YY~r~~~~G~~~n~~~~----~d~a~e~~~Vrk~iiD 479 (898)
T TIGR02103 405 EFREMVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKI-VPGYYHRLNEDGGVENSTCC----SNTATEHRMMAKLIVD 479 (898)
T ss_pred HHHHHHHHHHHCCCEEEEEeecccccccCccCccccccc-CcHhhEeeCCCCCeecCCCC----cCCCCCCHHHHHHHHH
Confidence 3578999999999999986543 2222110 0123322 235555532 3322111222 2346779999999999
Q ss_pred HHHHHH-hcCccEEEecCC
Q 022976 101 LVKDFI-YNGVDGIWNDMN 118 (289)
Q Consensus 101 ~~~~~~-~~Gvdg~w~D~~ 118 (289)
.++... ++|||||-+|.-
T Consensus 480 sl~~W~~ey~VDGFRfDlm 498 (898)
T TIGR02103 480 SLVVWAKDYKVDGFRFDLM 498 (898)
T ss_pred HHHHHHHHcCCCEEEEech
Confidence 998876 799999999955
No 51
>PRK12568 glycogen branching enzyme; Provisional
Probab=94.82 E-value=0.18 Score=51.73 Aligned_cols=97 Identities=16% Similarity=0.253 Sum_probs=59.2
Q ss_pred cccCCCCCCCh---HHHHHHHHHCCCeEEEeeCCe-eccCCC-ccccccccccceeeecCCCCceeeeecCCcccCCCCC
Q 022976 16 SLLTRHRFPDP---KSLAADLHLNGFKAIWMLDPG-IKHEDG-YFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYT 90 (289)
Q Consensus 16 f~~d~~~FPdp---~~~i~~L~~~g~k~~~~v~P~-i~~~~~-~~~y~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dft 90 (289)
|..+ .+|..+ +.||+.+|++|++||+=+.|. ...+.. ...|+. . .++ ...+...-....|.. ..+|+.
T Consensus 309 ~a~~-~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d~~~l~~fdg-~--~~Y-e~~d~~~g~~~~W~~--~~~N~~ 381 (730)
T PRK12568 309 YAPT-ARHGSPDGFAQFVDACHRAGIGVILDWVSAHFPDDAHGLAQFDG-A--ALY-EHADPREGMHRDWNT--LIYNYG 381 (730)
T ss_pred CccC-cccCCHHHHHHHHHHHHHCCCEEEEEeccccCCccccccccCCC-c--ccc-ccCCCcCCccCCCCC--eecccC
Confidence 3443 356666 789999999999999876653 332211 111211 0 111 111110001123422 257999
Q ss_pred CHHHHHHHHHHHHHHH-hcCccEEEecCCC
Q 022976 91 QSKVRSWWGSLVKDFI-YNGVDGIWNDMNE 119 (289)
Q Consensus 91 np~a~~ww~~~~~~~~-~~Gvdg~w~D~~E 119 (289)
+|+++++..+.++..+ +.|||||-+|...
T Consensus 382 ~peVr~~li~~a~~Wl~eyhIDG~R~DAva 411 (730)
T PRK12568 382 RPEVTAYLLGSALEWIEHYHLDGLRVDAVA 411 (730)
T ss_pred CHHHHHHHHHHHHHHHHHhCceEEEEcCHh
Confidence 9999999998888877 6899999999654
No 52
>PLN03244 alpha-amylase; Provisional
Probab=94.64 E-value=0.12 Score=52.98 Aligned_cols=95 Identities=19% Similarity=0.206 Sum_probs=62.3
Q ss_pred CCCCCh---HHHHHHHHHCCCeEEEeeCC-eeccCCC-c-cccccccccceeeecCCCCceeeeecCCcccCCCCCCHHH
Q 022976 21 HRFPDP---KSLAADLHLNGFKAIWMLDP-GIKHEDG-Y-FVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKV 94 (289)
Q Consensus 21 ~~FPdp---~~~i~~L~~~g~k~~~~v~P-~i~~~~~-~-~~y~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a 94 (289)
.+|-.| +.||+.+|++|++||+=+.+ +...+.. . ..|+ +....||-..+.|. -..| |. ...|+.++++
T Consensus 435 sRYGTPeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~GL~~fD-Gt~~~Yf~~~~~g~---~~~W-Gs-~~fnyg~~EV 508 (872)
T PLN03244 435 SRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFD-GSNDCYFHTGKRGH---HKHW-GT-RMFKYGDLDV 508 (872)
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEecCccCCCccccchhhcC-CCccceeccCCCCc---cCCC-CC-ceecCCCHHH
Confidence 356555 78999999999999987665 3433321 1 1222 22223443322221 1345 33 5689999999
Q ss_pred HHHHHHHHHHHH-hcCccEEEecCCCCc
Q 022976 95 RSWWGSLVKDFI-YNGVDGIWNDMNEPA 121 (289)
Q Consensus 95 ~~ww~~~~~~~~-~~Gvdg~w~D~~E~~ 121 (289)
+++..+-++..+ +++||||-+|.-.-.
T Consensus 509 r~FLLsna~yWleEyhIDGFRfDaVtSM 536 (872)
T PLN03244 509 LHFLISNLNWWITEYQIDGFQFHSLASM 536 (872)
T ss_pred HHHHHHHHHHHHHHhCcCcceeecchhh
Confidence 999999888877 799999999976433
No 53
>PRK12313 glycogen branching enzyme; Provisional
Probab=94.63 E-value=0.17 Score=51.36 Aligned_cols=87 Identities=22% Similarity=0.232 Sum_probs=54.2
Q ss_pred hHHHHHHHHHCCCeEEEeeCC-eeccCCCc-cccccccccceee-ecCCCCceeeeecCCcccCCCCCCHHHHHHHHHHH
Q 022976 26 PKSLAADLHLNGFKAIWMLDP-GIKHEDGY-FVYDSGSKIDVWI-QKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLV 102 (289)
Q Consensus 26 p~~~i~~L~~~g~k~~~~v~P-~i~~~~~~-~~y~~~~~~~~~v-~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~ 102 (289)
.+.||+.+|++|++||+=+.+ +...+... ..|+. ..++- .++. ..+ ...|. +.-+|+.||++++...+.+
T Consensus 222 ~k~lv~~~H~~Gi~VilD~V~nH~~~~~~~~~~~~~---~~~~~~~~~~-~~~-~~~w~--~~~~n~~~~~vr~~l~~~~ 294 (633)
T PRK12313 222 FMYLVDALHQNGIGVILDWVPGHFPKDDDGLAYFDG---TPLYEYQDPR-RAE-NPDWG--ALNFDLGKNEVRSFLISSA 294 (633)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCCCCcccccccCC---CcceeecCCC-CCc-CCCCC--CcccCCCCHHHHHHHHHHH
Confidence 378999999999999987665 33222111 11111 01111 1111 011 11342 2357999999999999988
Q ss_pred HHHH-hcCccEEEecCCC
Q 022976 103 KDFI-YNGVDGIWNDMNE 119 (289)
Q Consensus 103 ~~~~-~~Gvdg~w~D~~E 119 (289)
+..+ ++|||||-+|...
T Consensus 295 ~~W~~~~~iDG~R~D~~~ 312 (633)
T PRK12313 295 LFWLDEYHLDGLRVDAVS 312 (633)
T ss_pred HHHHHHhCCcEEEEcChh
Confidence 8877 5799999999764
No 54
>PRK05402 glycogen branching enzyme; Provisional
Probab=94.59 E-value=0.17 Score=52.14 Aligned_cols=87 Identities=15% Similarity=0.180 Sum_probs=53.0
Q ss_pred HHHHHHHHHCCCeEEEeeCCe-eccCCCc-cccccccccceeeecCCCCceeeeecCCcccCCCCCCHHHHHHHHHHHHH
Q 022976 27 KSLAADLHLNGFKAIWMLDPG-IKHEDGY-FVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKD 104 (289)
Q Consensus 27 ~~~i~~L~~~g~k~~~~v~P~-i~~~~~~-~~y~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~ 104 (289)
+.||+.+|++|++||+=+.|. ...+... ..|+ +. .-+...++. .. ....|. +..+|+.||++++...+.++.
T Consensus 318 k~lV~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~-~~-~~y~~~~~~-~~-~~~~w~--~~~~n~~~~~v~~~l~~~~~~ 391 (726)
T PRK05402 318 RYFVDACHQAGIGVILDWVPAHFPKDAHGLARFD-GT-ALYEHADPR-EG-EHPDWG--TLIFNYGRNEVRNFLVANALY 391 (726)
T ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCccchhccC-CC-cceeccCCc-CC-ccCCCC--CccccCCCHHHHHHHHHHHHH
Confidence 789999999999999876653 2222110 0111 00 011111110 00 011232 235799999999999988888
Q ss_pred HH-hcCccEEEecCCC
Q 022976 105 FI-YNGVDGIWNDMNE 119 (289)
Q Consensus 105 ~~-~~Gvdg~w~D~~E 119 (289)
.+ +.|||||-+|...
T Consensus 392 W~~e~~iDG~R~D~v~ 407 (726)
T PRK05402 392 WLEEFHIDGLRVDAVA 407 (726)
T ss_pred HHHHhCCcEEEECCHH
Confidence 77 5899999999754
No 55
>PRK14706 glycogen branching enzyme; Provisional
Probab=94.54 E-value=0.73 Score=46.80 Aligned_cols=93 Identities=22% Similarity=0.253 Sum_probs=56.7
Q ss_pred CCCCCh---HHHHHHHHHCCCeEEEeeCC-eeccCCCcc-ccccccccceeeecCC-CCceeeeecCCcccCCCCCCHHH
Q 022976 21 HRFPDP---KSLAADLHLNGFKAIWMLDP-GIKHEDGYF-VYDSGSKIDVWIQKAD-GTPFIGEVWPGPCVFPDYTQSKV 94 (289)
Q Consensus 21 ~~FPdp---~~~i~~L~~~g~k~~~~v~P-~i~~~~~~~-~y~~~~~~~~~v~~~~-g~~~~~~~w~g~~~~~Dftnp~a 94 (289)
.+|-.+ +.||+.+|++|++||+=+.| ++..+.... .++ +.. -+...+++ |. -..|. +...|+.+|++
T Consensus 211 ~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~~d-g~~-~y~~~~~~~g~---~~~w~--~~~~~~~~~eV 283 (639)
T PRK14706 211 SRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAHFD-GGP-LYEYADPRKGY---HYDWN--TYIFDYGRNEV 283 (639)
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhhhccC-CCc-ceeccCCcCCc---CCCCC--CcccCCCCHHH
Confidence 345444 78999999999999987655 333221110 011 100 01111111 10 12342 23489999999
Q ss_pred HHHHHHHHHHHH-hcCccEEEecCCCC
Q 022976 95 RSWWGSLVKDFI-YNGVDGIWNDMNEP 120 (289)
Q Consensus 95 ~~ww~~~~~~~~-~~Gvdg~w~D~~E~ 120 (289)
+++..+.++..+ +.+||||-+|...-
T Consensus 284 r~~l~~~~~~W~~e~~iDG~R~Dav~~ 310 (639)
T PRK14706 284 VMFLIGSALKWLQDFHVDGLRVDAVAS 310 (639)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEeeehh
Confidence 999998888877 69999999997543
No 56
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.41 E-value=0.15 Score=48.69 Aligned_cols=95 Identities=21% Similarity=0.202 Sum_probs=60.9
Q ss_pred CCCCCCh-HHHHHHHHHCCCeEEEeeCCeeccCCCccccccccccceeeecCCCCcee-eeecCCcccCCCCCCHHHHHH
Q 022976 20 RHRFPDP-KSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFI-GEVWPGPCVFPDYTQSKVRSW 97 (289)
Q Consensus 20 ~~~FPdp-~~~i~~L~~~g~k~~~~v~P~i~~~~~~~~y~~~~~~~~~v~~~~g~~~~-~~~w~g~~~~~Dftnp~a~~w 97 (289)
....-|| +.+|++-|++|++++.|+.|+......... ......-.....+|..+. ...|- ...++|=.+|++++|
T Consensus 110 ~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~~a~~~s~~--~~~~p~~~~~~~~~~~~~~~~~~~-~~~~ldPg~Pevq~~ 186 (418)
T COG1649 110 VDPGYDPLAFVIAEAHKRGLEVHAWFNPYRMAPPTSPL--TKRHPHWLTTKRPGWVYVRHQGWG-KRVWLDPGIPEVQDF 186 (418)
T ss_pred CCCCCChHHHHHHHHHhcCCeeeechhhcccCCCCChh--HhhCCCCcccCCCCeEEEecCCce-eeeEeCCCChHHHHH
Confidence 3444555 889999999999999999998765321100 001111111122232222 11110 456788899999999
Q ss_pred HHHHHHHHH-hcCccEEEecC
Q 022976 98 WGSLVKDFI-YNGVDGIWNDM 117 (289)
Q Consensus 98 w~~~~~~~~-~~Gvdg~w~D~ 117 (289)
..+.+.+++ ++.|||+-+|.
T Consensus 187 i~~lv~evV~~YdvDGIQfDd 207 (418)
T COG1649 187 ITSLVVEVVRNYDVDGIQFDD 207 (418)
T ss_pred HHHHHHHHHhCCCCCceecce
Confidence 999997776 79999999994
No 57
>PLN02960 alpha-amylase
Probab=94.09 E-value=0.21 Score=51.84 Aligned_cols=89 Identities=18% Similarity=0.175 Sum_probs=58.6
Q ss_pred HHHHHHHHHCCCeEEEeeCC-eeccCCC--ccccccccccceeeecCCCCceeeeecCCcccCCCCCCHHHHHHHHHHHH
Q 022976 27 KSLAADLHLNGFKAIWMLDP-GIKHEDG--YFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVK 103 (289)
Q Consensus 27 ~~~i~~L~~~g~k~~~~v~P-~i~~~~~--~~~y~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~ 103 (289)
+.||+.+|++|++||+=+.| ++..+.. ...|+ +....|+-.+..| ....| |. ..+||.+|+++++..+.++
T Consensus 469 k~LVd~aH~~GI~VILDvV~NH~~~d~~~~L~~FD-G~~~~Yf~~~~~g---~~~~W-G~-~~fNy~~~eVr~fLlsna~ 542 (897)
T PLN02960 469 KRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFD-GSNDCYFHSGKRG---HHKRW-GT-RMFKYGDHEVLHFLLSNLN 542 (897)
T ss_pred HHHHHHHHHCCCEEEEEecccccCCccccchhhcC-CCccceeecCCCC---ccCCC-CC-cccCCCCHHHHHHHHHHHH
Confidence 78999999999999987654 3333321 11232 2222233322222 12345 32 4689999999999999888
Q ss_pred HHH-hcCccEEEecCCCCc
Q 022976 104 DFI-YNGVDGIWNDMNEPA 121 (289)
Q Consensus 104 ~~~-~~Gvdg~w~D~~E~~ 121 (289)
..+ +++||||-+|...-.
T Consensus 543 yWl~EyhIDGfR~DAV~sM 561 (897)
T PLN02960 543 WWVTEYRVDGFQFHSLGSM 561 (897)
T ss_pred HHHHHHCCCceeeccccee
Confidence 877 689999999977543
No 58
>PLN02361 alpha-amylase
Probab=93.67 E-value=0.43 Score=45.69 Aligned_cols=35 Identities=20% Similarity=-0.047 Sum_probs=27.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHh-cCccEEEecCCC
Q 022976 85 VFPDYTQSKVRSWWGSLVKDFIY-NGVDGIWNDMNE 119 (289)
Q Consensus 85 ~~~Dftnp~a~~ww~~~~~~~~~-~Gvdg~w~D~~E 119 (289)
.-+|.+||++++..++-++-+.+ .|||||-+|...
T Consensus 147 pDLd~~np~Vr~~l~~~~~wl~~~~GiDGfRlDavk 182 (401)
T PLN02361 147 PNIDHTQHFVRKDIIGWLIWLRNDVGFQDFRFDFAK 182 (401)
T ss_pred CccCCCCHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 34567899999988887776664 899999999653
No 59
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=93.39 E-value=0.29 Score=45.23 Aligned_cols=84 Identities=20% Similarity=0.270 Sum_probs=53.7
Q ss_pred HHHHHHHHHCCCeEEEeeCCeeccCCCccc-ccccc---ccceeeecCCCCceeeeecCCcccCCCCCCHHHHHHHHHHH
Q 022976 27 KSLAADLHLNGFKAIWMLDPGIKHEDGYFV-YDSGS---KIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLV 102 (289)
Q Consensus 27 ~~~i~~L~~~g~k~~~~v~P~i~~~~~~~~-y~~~~---~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~ 102 (289)
++-|+.||+.|.+++-.++-. .-+.|.- |++.. ....+ |.. -..|||. .++|+.+|+-++...+++
T Consensus 84 ~~~i~~Lk~~g~~viaYlSvG--e~E~~R~y~~~~~~~~~~~~l-----~~~--n~~W~g~-~~vd~~~~~W~~il~~rl 153 (315)
T TIGR01370 84 PEEIVRAAAAGRWPIAYLSIG--AAEDYRFYWQKGWKVNAPAWL-----GNE--DPDWPGN-YDVKYWDPEWKAIAFSYL 153 (315)
T ss_pred HHHHHHHHhCCcEEEEEEEch--hccccchhhhhhhhcCCHHHh-----CCC--CCCCCCc-eeEecccHHHHHHHHHHH
Confidence 566788999999888766522 1111111 11100 00111 111 1358775 679999999888888888
Q ss_pred HHHHhcCccEEEecCCCC
Q 022976 103 KDFIYNGVDGIWNDMNEP 120 (289)
Q Consensus 103 ~~~~~~Gvdg~w~D~~E~ 120 (289)
+.+.+.|+||+-+|.-+.
T Consensus 154 ~~l~~kGfDGvfLD~lDs 171 (315)
T TIGR01370 154 DRVIAQGFDGVYLDLIDA 171 (315)
T ss_pred HHHHHcCCCeEeeccchh
Confidence 888899999999997653
No 60
>PLN02877 alpha-amylase/limit dextrinase
Probab=93.19 E-value=0.47 Score=50.01 Aligned_cols=89 Identities=15% Similarity=0.094 Sum_probs=55.3
Q ss_pred hHHHHHHHHHCCCeEEEeeCCeeccCCC----ccccccccccceeeec-CCCCceeeeecCCcccCCCCCCHHHHHHHHH
Q 022976 26 PKSLAADLHLNGFKAIWMLDPGIKHEDG----YFVYDSGSKIDVWIQK-ADGTPFIGEVWPGPCVFPDYTQSKVRSWWGS 100 (289)
Q Consensus 26 p~~~i~~L~~~g~k~~~~v~P~i~~~~~----~~~y~~~~~~~~~v~~-~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~ 100 (289)
.++||+.||++|++||+-|...=..+++ ...++. ..-+||.+. ++|......+. ....-.++.++++..+
T Consensus 468 fk~mV~~lH~~GI~VImDVVyNHt~~~g~~~~~s~ld~-~vP~YY~r~~~~G~~~ns~c~----n~~Ase~~mvrklIlD 542 (970)
T PLN02877 468 FRKMVQALNRIGLRVVLDVVYNHLHSSGPFDENSVLDK-IVPGYYLRRNSDGFIENSTCV----NNTASEHYMVDRLIVD 542 (970)
T ss_pred HHHHHHHHHHCCCEEEEEECCccccCCCCcchhhcccC-CCCCceEEECCCCCcccCCcc----CCCccCCHHHHHHHHH
Confidence 6899999999999999876532211111 012332 223566653 34532221111 1223456888899888
Q ss_pred HHHHHH-hcCccEEEecCCC
Q 022976 101 LVKDFI-YNGVDGIWNDMNE 119 (289)
Q Consensus 101 ~~~~~~-~~Gvdg~w~D~~E 119 (289)
.++..+ ++|||||-+|...
T Consensus 543 sl~yW~~ey~VDGFRFDlmg 562 (970)
T PLN02877 543 DLLNWAVNYKVDGFRFDLMG 562 (970)
T ss_pred HHHHHHHHhCCCEEEEEccc
Confidence 888777 6999999999764
No 61
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=93.08 E-value=0.51 Score=46.19 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=27.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-cCccEEEecCCC
Q 022976 87 PDYTQSKVRSWWGSLVKDFIY-NGVDGIWNDMNE 119 (289)
Q Consensus 87 ~Dftnp~a~~ww~~~~~~~~~-~Gvdg~w~D~~E 119 (289)
+|..||++++...+.++.+++ .|||||-+|...
T Consensus 203 Ln~~np~V~~~l~~~~~~w~~~~giDGfRlDavk 236 (479)
T PRK09441 203 IDFRHPEVREELKYWAKWYMETTGFDGFRLDAVK 236 (479)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhc
Confidence 455689999999888888886 999999999664
No 62
>PLN02784 alpha-amylase
Probab=92.41 E-value=0.67 Score=48.18 Aligned_cols=34 Identities=24% Similarity=0.021 Sum_probs=27.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-hcCccEEEecCCC
Q 022976 86 FPDYTQSKVRSWWGSLVKDFI-YNGVDGIWNDMNE 119 (289)
Q Consensus 86 ~~Dftnp~a~~ww~~~~~~~~-~~Gvdg~w~D~~E 119 (289)
-+|++||++++-..+-++-+. ++|||||-+|+.-
T Consensus 642 DLDh~npeVR~eL~~WlkWL~~e~G~DGfRLDaVK 676 (894)
T PLN02784 642 NIDHSQDFVRKDLKEWLCWMRKEVGYDGWRLDFVR 676 (894)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhccCCCEEEEeccC
Confidence 467789999988777777666 6899999999874
No 63
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=91.43 E-value=1 Score=43.71 Aligned_cols=33 Identities=27% Similarity=0.370 Sum_probs=29.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCccEEEecCCC
Q 022976 87 PDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNE 119 (289)
Q Consensus 87 ~Dftnp~a~~ww~~~~~~~~~~Gvdg~w~D~~E 119 (289)
+++.||+++++..+.++..++.|||||-+|.-.
T Consensus 169 ln~~n~~v~~~~~~~~~~W~~~gvDGfRlDa~~ 201 (505)
T COG0366 169 LNWENPEVREELLDVVKFWLDKGVDGFRLDAAK 201 (505)
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCCCeEEeccHh
Confidence 689999999999888888889999999999653
No 64
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=91.32 E-value=0.97 Score=45.06 Aligned_cols=37 Identities=22% Similarity=0.232 Sum_probs=31.0
Q ss_pred ccCCCCCCHHHHHHHHHHHH-HHHhcCccEEEecCCCC
Q 022976 84 CVFPDYTQSKVRSWWGSLVK-DFIYNGVDGIWNDMNEP 120 (289)
Q Consensus 84 ~~~~Dftnp~a~~ww~~~~~-~~~~~Gvdg~w~D~~E~ 120 (289)
..-+|+.||+.++-+++.++ ...+.||||+-+|....
T Consensus 180 ~pDln~~n~~V~~~~~~~l~~~~~~~gvdGfRiD~v~~ 217 (545)
T KOG0471|consen 180 QPDLNYENPDVRKAIKEWLRDFWLEKGVDGFRIDAVKG 217 (545)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEcccc
Confidence 34578889999999999998 55589999999998753
No 65
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=91.02 E-value=0.67 Score=46.96 Aligned_cols=91 Identities=16% Similarity=0.167 Sum_probs=62.8
Q ss_pred ChHHHHHHHHHCCCeEEEe-eCCeeccCC--Cccccccccc-cceeeecCCCCceeeeecCCcccCCCCCCHHHHHHHHH
Q 022976 25 DPKSLAADLHLNGFKAIWM-LDPGIKHED--GYFVYDSGSK-IDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGS 100 (289)
Q Consensus 25 dp~~~i~~L~~~g~k~~~~-v~P~i~~~~--~~~~y~~~~~-~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~ 100 (289)
+.|.||+++|..|+-|++= |.-+.+.++ +...|+ |.+ ..||-.++.| .-+-+.+...+..+|++...-.+
T Consensus 312 efK~lVd~aHs~GI~VlLDVV~sHaa~n~~d~l~~fd-Gid~~~Yf~~~~r~-----~h~~~~~r~fn~~~~~V~rflL~ 385 (757)
T KOG0470|consen 312 EFKELVDKAHSLGIEVLLDVVHSHAAKNSKDGLNMFD-GIDNSVYFHSGPRG-----YHNSWCSRLFNYNHPVVLRFLLS 385 (757)
T ss_pred HHHHHHHHHhhCCcEEehhhhhhhcccCcCCcchhcc-CcCCceEEEeCCcc-----cccccccccccCCCHHHHHHHHH
Confidence 5689999999999988765 344444322 334454 444 5666665532 22223456789999999988888
Q ss_pred HHHHHH-hcCccEEEecCCCCc
Q 022976 101 LVKDFI-YNGVDGIWNDMNEPA 121 (289)
Q Consensus 101 ~~~~~~-~~Gvdg~w~D~~E~~ 121 (289)
-++..+ ++.||||-+|...-.
T Consensus 386 nLr~WVtEY~vDGFRFD~~ssm 407 (757)
T KOG0470|consen 386 NLRWWVTEYHVDGFRFDLVSSM 407 (757)
T ss_pred HHHHHHHheeccceEEcchhhh
Confidence 777766 799999999976533
No 66
>PRK09505 malS alpha-amylase; Reviewed
Probab=88.60 E-value=1.5 Score=44.81 Aligned_cols=29 Identities=17% Similarity=0.352 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHHHHH-hcCccEEEecCCC
Q 022976 91 QSKVRSWWGSLVKDFI-YNGVDGIWNDMNE 119 (289)
Q Consensus 91 np~a~~ww~~~~~~~~-~~Gvdg~w~D~~E 119 (289)
||++++...+-++..+ +.|||||-+|...
T Consensus 435 n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaak 464 (683)
T PRK09505 435 GYTPRDYLTHWLSQWVRDYGIDGFRVDTAK 464 (683)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEechH
Confidence 4578888888888777 4899999999664
No 67
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=87.56 E-value=2.9 Score=42.25 Aligned_cols=93 Identities=22% Similarity=0.343 Sum_probs=56.6
Q ss_pred CCCCCh---HHHHHHHHHCCCeEEEeeCC-eeccCCCcc-ccccccccceeeecCCCCceee--eecCCcccCCCCC-CH
Q 022976 21 HRFPDP---KSLAADLHLNGFKAIWMLDP-GIKHEDGYF-VYDSGSKIDVWIQKADGTPFIG--EVWPGPCVFPDYT-QS 92 (289)
Q Consensus 21 ~~FPdp---~~~i~~L~~~g~k~~~~v~P-~i~~~~~~~-~y~~~~~~~~~v~~~~g~~~~~--~~w~g~~~~~Dft-np 92 (289)
.+|-.| +++|+.+|++|+-||+=+.| ++..+..|. .|+ + -.+....+ |..+ ..| ...+++. .+
T Consensus 208 sryGtPedfk~fVD~aH~~GIgViLD~V~~HF~~d~~~L~~fd-g---~~~~e~~~--~~~~~~~~W---g~~i~~~gr~ 278 (628)
T COG0296 208 SRYGTPEDFKALVDAAHQAGIGVILDWVPNHFPPDGNYLARFD-G---TFLYEHED--PRRGEHTDW---GTAIFNYGRN 278 (628)
T ss_pred ccCCCHHHHHHHHHHHHHcCCEEEEEecCCcCCCCcchhhhcC-C---ccccccCC--cccccCCCc---ccchhccCcH
Confidence 467777 68999999999999887655 445443321 111 0 01111111 1111 223 2345555 89
Q ss_pred HHHHHHHHHHHHHH-hcCccEEEecCCCCcc
Q 022976 93 KVRSWWGSLVKDFI-YNGVDGIWNDMNEPAV 122 (289)
Q Consensus 93 ~a~~ww~~~~~~~~-~~Gvdg~w~D~~E~~~ 122 (289)
++|.+.-+-....+ ++.|||+-+|.-.-..
T Consensus 279 EVR~Fll~nal~Wl~~yHiDGlRvDAV~sml 309 (628)
T COG0296 279 EVRNFLLANALYWLEEYHIDGLRVDAVASML 309 (628)
T ss_pred HHHHHHHHHHHHHHHHhCCcceeeehhhhhh
Confidence 99999877665544 7999999999876443
No 68
>PLN02355 probable galactinol--sucrose galactosyltransferase 1
Probab=86.84 E-value=3.2 Score=42.57 Aligned_cols=28 Identities=29% Similarity=0.462 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHhcCccEEEecCCC
Q 022976 92 SKVRSWWGSLVKDFIYNGVDGIWNDMNE 119 (289)
Q Consensus 92 p~a~~ww~~~~~~~~~~Gvdg~w~D~~E 119 (289)
.++..+|.+.+..|.+.||||+|.|...
T Consensus 370 e~~~~FY~~~hsyL~s~GVDgVKVD~Q~ 397 (758)
T PLN02355 370 EKVFSFYNELHSYLASAGIDGVKVDVQN 397 (758)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEchhh
Confidence 4467889988888889999999999754
No 69
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=86.11 E-value=2.4 Score=42.35 Aligned_cols=89 Identities=17% Similarity=0.210 Sum_probs=48.4
Q ss_pred HHHHHHHHHCCCeEEEeeCCeeccCCCccccccccccce-eeecCCCC---ce-eeeecCCcccCCCCCCHHHHHHHHHH
Q 022976 27 KSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDV-WIQKADGT---PF-IGEVWPGPCVFPDYTQSKVRSWWGSL 101 (289)
Q Consensus 27 ~~~i~~L~~~g~k~~~~v~P~i~~~~~~~~y~~~~~~~~-~v~~~~g~---~~-~~~~w~g~~~~~Dftnp~a~~ww~~~ 101 (289)
++.|+.+|+.|.+.+...--+-.. ++| ...++.... +.++..+. .+ .+..|+..-.+.|-.||+=++++.++
T Consensus 173 k~yI~~ah~~Gmkam~Ynmiyaa~-~~~--~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~yI~~q 249 (559)
T PF13199_consen 173 KDYINAAHKYGMKAMAYNMIYAAN-NNY--EEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQNYIINQ 249 (559)
T ss_dssp HHHHHHHHHTT-EEEEEEESSEEE-TT----S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCcceehhHhhhccc-cCc--ccccCCchhhhhhccCCCccceeecCcccccceEEecCCCHHHHHHHHHH
Confidence 789999999999998874333222 222 112222222 22333321 11 22446555578898999988888888
Q ss_pred HHHHH-hcCccEEEecCC
Q 022976 102 VKDFI-YNGVDGIWNDMN 118 (289)
Q Consensus 102 ~~~~~-~~Gvdg~w~D~~ 118 (289)
+++.+ ..|+|||=+|.=
T Consensus 250 ~~~~~~~~gFDG~hlDq~ 267 (559)
T PF13199_consen 250 MNKAIQNFGFDGWHLDQL 267 (559)
T ss_dssp HHHHHHHHT--EEEEE-S
T ss_pred HHHHHHccCCceEeeecc
Confidence 87766 599999999953
No 70
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=85.09 E-value=3.3 Score=38.78 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=18.3
Q ss_pred ccCCCCCCChHHHHHHHHHCCCeEEEee
Q 022976 17 LLTRHRFPDPKSLAADLHLNGFKAIWML 44 (289)
Q Consensus 17 ~~d~~~FPdp~~~i~~L~~~g~k~~~~v 44 (289)
+|++++| ||++.++..++.|.|+++.+
T Consensus 85 ~F~p~~f-D~dqW~~~ak~aGakY~VlT 111 (346)
T PF01120_consen 85 QFNPTKF-DADQWAKLAKDAGAKYVVLT 111 (346)
T ss_dssp G---TT---HHHHHHHHHHTT-SEEEEE
T ss_pred hCCcccC-CHHHHHHHHHHcCCCEEEee
Confidence 6677777 78999999999999987764
No 71
>PLN02684 Probable galactinol--sucrose galactosyltransferase
Probab=84.36 E-value=4.5 Score=41.38 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHhcCccEEEecCCC
Q 022976 92 SKVRSWWGSLVKDFIYNGVDGIWNDMNE 119 (289)
Q Consensus 92 p~a~~ww~~~~~~~~~~Gvdg~w~D~~E 119 (289)
.++..+|.+.+..|.+.||||+|.|...
T Consensus 361 ~~~~~FYd~~hsyL~s~GVDgVKVD~Q~ 388 (750)
T PLN02684 361 KKVYKFYNELHSYLADAGIDGVKVDVQC 388 (750)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEChhh
Confidence 4567889998888889999999999764
No 72
>PF14885 GHL15: Hypothetical glycosyl hydrolase family 15
Probab=83.16 E-value=2.6 Score=30.81 Aligned_cols=56 Identities=21% Similarity=0.478 Sum_probs=37.6
Q ss_pred cccceeeecCCCCceeeeecCCcc---cCCCCCCHHHHHHHHHHHHH-HHhcCccEEEecCC
Q 022976 61 SKIDVWIQKADGTPFIGEVWPGPC---VFPDYTQSKVRSWWGSLVKD-FIYNGVDGIWNDMN 118 (289)
Q Consensus 61 ~~~~~~v~~~~g~~~~~~~w~g~~---~~~Dftnp~a~~ww~~~~~~-~~~~Gvdg~w~D~~ 118 (289)
.....+.++.+|+.. .-|+|.. -..+...|..++||.+.+.+ +...++||+.+|..
T Consensus 17 ~~~~w~a~~~~g~~i--~~W~~~~~~~~~~~~~~~~~r~~w~~~v~e~~~~s~~DGv~~Dn~ 76 (79)
T PF14885_consen 17 PRADWFAKTANGSRI--SEWPGYPGHYQMYVWSCPDYRRYWVDAVVEELQNSPWDGVFADND 76 (79)
T ss_pred cCchhhccccCccce--eecCCCCceeeeccCCcchHHHHHHHHHHHHHhcCccceeeeecc
Confidence 334556666666543 4565542 22466669999999999854 44789999999953
No 73
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=81.94 E-value=5.6 Score=37.89 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=22.9
Q ss_pred ccCCCCCCChHHHHHHHHHCCCeEEEee
Q 022976 17 LLTRHRFPDPKSLAADLHLNGFKAIWML 44 (289)
Q Consensus 17 ~~d~~~FPdp~~~i~~L~~~g~k~~~~v 44 (289)
.|++++| ||++.++.+++.|.|+++.+
T Consensus 75 ~F~p~~f-D~~~Wa~~~k~AGakY~vlT 101 (384)
T smart00812 75 QFTAEKF-DPEEWADLFKKAGAKYVVLT 101 (384)
T ss_pred cCCchhC-CHHHHHHHHHHcCCCeEEee
Confidence 5777776 78999999999999988754
No 74
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=80.11 E-value=5.6 Score=36.05 Aligned_cols=41 Identities=24% Similarity=0.526 Sum_probs=30.2
Q ss_pred cCCcccCCCCCCHHHHHHHHHHHHHHHhcCccEEEecCCCCc
Q 022976 80 WPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPA 121 (289)
Q Consensus 80 w~g~~~~~Dftnp~a~~ww~~~~~~~~~~Gvdg~w~D~~E~~ 121 (289)
|||.-. +-|=.|+=.+-+.+.++++.+.|+||+-+|--++.
T Consensus 111 W~Gny~-VkYW~~eWkdii~~~l~rL~d~GfdGvyLD~VD~y 151 (300)
T COG2342 111 WPGNYA-VKYWEPEWKDIIRSYLDRLIDQGFDGVYLDVVDAY 151 (300)
T ss_pred CCCCce-eeccCHHHHHHHHHHHHHHHHccCceEEEeeechH
Confidence 777632 34455665566777778888999999999988764
No 75
>PRK13840 sucrose phosphorylase; Provisional
Probab=67.05 E-value=7.4 Score=38.36 Aligned_cols=34 Identities=18% Similarity=0.081 Sum_probs=30.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCccEEEecCC
Q 022976 85 VFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMN 118 (289)
Q Consensus 85 ~~~Dftnp~a~~ww~~~~~~~~~~Gvdg~w~D~~ 118 (289)
.-+|+.||++++...+.++.+++.|||||-+|.-
T Consensus 162 pDLN~~NP~V~~~i~~il~fwl~~GVDgfRLDAv 195 (495)
T PRK13840 162 IDIDVHSAAGWEYLMSILDRFAASHVTLIRLDAA 195 (495)
T ss_pred ceeCCCCHHHHHHHHHHHHHHHHCCCCEEEEech
Confidence 3467789999999999999888999999999975
No 76
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=63.20 E-value=30 Score=30.50 Aligned_cols=59 Identities=15% Similarity=0.213 Sum_probs=36.6
Q ss_pred HHHHHHHHHCCCeEEEeeCCeeccCCCccccccccccceeeecCCCCceeeeecCCcccCCCCCCHHHHHHHHHHHHHHH
Q 022976 27 KSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFI 106 (289)
Q Consensus 27 ~~~i~~L~~~g~k~~~~v~P~i~~~~~~~~y~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 106 (289)
++.++.||++|.||++.+.-.-.. .+ + --..++++++=|.+.+..++
T Consensus 54 ~~~i~~l~~kG~KVl~sigg~~~~-~~---~-----------------------------~~~~~~~~~~~fa~~l~~~v 100 (255)
T cd06542 54 ETYIRPLQAKGTKVLLSILGNHLG-AG---F-----------------------------ANNLSDAAAKAYAKAIVDTV 100 (255)
T ss_pred HHHHHHHhhCCCEEEEEECCCCCC-CC---c-----------------------------cccCCHHHHHHHHHHHHHHH
Confidence 678888999999998866421000 00 0 00123555555555555554
Q ss_pred -hcCccEEEecCC
Q 022976 107 -YNGVDGIWNDMN 118 (289)
Q Consensus 107 -~~Gvdg~w~D~~ 118 (289)
++|+||+=+|.-
T Consensus 101 ~~yglDGiDiD~E 113 (255)
T cd06542 101 DKYGLDGVDFDDE 113 (255)
T ss_pred HHhCCCceEEeee
Confidence 799999999973
No 77
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=62.03 E-value=44 Score=34.58 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHhcCccEEEecCCC
Q 022976 92 SKVRSWWGSLVKDFIYNGVDGIWNDMNE 119 (289)
Q Consensus 92 p~a~~ww~~~~~~~~~~Gvdg~w~D~~E 119 (289)
.++.++|.+.+..|.+.||||+|.|-..
T Consensus 381 e~~~~FY~~~hs~Las~GVDgVKVDvQ~ 408 (777)
T PLN02711 381 ELAYQMYEGLHSHLQSVGIDGVKVDVIH 408 (777)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEchhh
Confidence 4467888888888889999999999553
No 78
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=60.73 E-value=9.4 Score=22.48 Aligned_cols=17 Identities=35% Similarity=0.569 Sum_probs=12.3
Q ss_pred HHHHHHhcCccEEEecC
Q 022976 101 LVKDFIYNGVDGIWNDM 117 (289)
Q Consensus 101 ~~~~~~~~Gvdg~w~D~ 117 (289)
.++.+++.||||+..|.
T Consensus 12 ~~~~~l~~GVDgI~Td~ 28 (30)
T PF13653_consen 12 SWRELLDLGVDGIMTDY 28 (30)
T ss_dssp HHHHHHHHT-SEEEES-
T ss_pred HHHHHHHcCCCEeeCCC
Confidence 34678899999999873
No 79
>PF05691 Raffinose_syn: Raffinose synthase or seed imbibition protein Sip1; InterPro: IPR008811 This family consists of several raffinose synthase proteins, also known as seed imbibition (Sip1) proteins. Raffinose (O-alpha- D-galactopyranosyl- (1-->6)- O-alpha- D-glucopyranosyl-(1-->2)- O-beta- D-fructofuranoside) is a widespread oligosaccharide in plant seeds and other tissues. Raffinose synthase (2.4.1.82 from EC) is the key enzyme that channels sucrose into the raffinose oligosaccharide pathway [].
Probab=58.20 E-value=59 Score=33.72 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHhcCccEEEecCCC
Q 022976 93 KVRSWWGSLVKDFIYNGVDGIWNDMNE 119 (289)
Q Consensus 93 ~a~~ww~~~~~~~~~~Gvdg~w~D~~E 119 (289)
++...|.+.+..|.+.||||+|.|...
T Consensus 365 ~~~~FYd~~hsyL~s~GVDgVKVD~Q~ 391 (747)
T PF05691_consen 365 DAFRFYDDFHSYLASAGVDGVKVDVQA 391 (747)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEchhh
Confidence 577889999888889999999999664
No 80
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=56.13 E-value=16 Score=35.78 Aligned_cols=34 Identities=15% Similarity=0.116 Sum_probs=30.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCccEEEecCC
Q 022976 85 VFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMN 118 (289)
Q Consensus 85 ~~~Dftnp~a~~ww~~~~~~~~~~Gvdg~w~D~~ 118 (289)
.-+||.||+.++...+.++.+++.|||||-+|.-
T Consensus 158 pDLN~~np~v~e~i~~il~fwl~~GvdgfRLDAv 191 (470)
T TIGR03852 158 IDLDVTSETTKRFIRDNLENLAEHGASIIRLDAF 191 (470)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 4478889999999988888888999999999987
No 81
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=55.79 E-value=49 Score=30.36 Aligned_cols=57 Identities=19% Similarity=0.257 Sum_probs=37.2
Q ss_pred HHHHHHHHHCCCeEEEeeCCeeccCCCccccccccccceeeecCCCCceeeeecCCcccCCCCCCHHHHHHHHHHHHHHH
Q 022976 27 KSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFI 106 (289)
Q Consensus 27 ~~~i~~L~~~g~k~~~~v~P~i~~~~~~~~y~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 106 (289)
++-++.||++|+|+++.+.-. . +. ..+.+++.++-+.+.+.+++
T Consensus 63 ~~~i~~~q~~G~KVllSiGG~----~-------------------~~-------------~~~~~~~~~~~fa~sl~~~~ 106 (312)
T cd02871 63 KADIKALQAKGKKVLISIGGA----N-------------------GH-------------VDLNHTAQEDNFVDSIVAII 106 (312)
T ss_pred HHHHHHHHHCCCEEEEEEeCC----C-------------------Cc-------------cccCCHHHHHHHHHHHHHHH
Confidence 566778999999999876311 0 00 01345566666666665554
Q ss_pred -hcCccEEEecCCC
Q 022976 107 -YNGVDGIWNDMNE 119 (289)
Q Consensus 107 -~~Gvdg~w~D~~E 119 (289)
+.|+||+=+|.=.
T Consensus 107 ~~~g~DGiDiD~E~ 120 (312)
T cd02871 107 KEYGFDGLDIDLES 120 (312)
T ss_pred HHhCCCeEEEeccc
Confidence 7999999999644
No 82
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=53.88 E-value=39 Score=31.71 Aligned_cols=90 Identities=19% Similarity=0.131 Sum_probs=49.5
Q ss_pred CCChHHHHHHHHHCCCeEEEeeCCeeccCCCccccccccccceeeecCCCCceeeeecCCcccCCCCCCHHHHHHHHHHH
Q 022976 23 FPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLV 102 (289)
Q Consensus 23 FPdp~~~i~~L~~~g~k~~~~v~P~i~~~~~~~~y~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~ 102 (289)
|.....+++.+++.|+||++.+...-. +.-+++. --+....+.+|.... .|.....++.+|..++.....+
T Consensus 46 F~~lD~~l~~a~~~Gi~viL~~~~~~~---P~Wl~~~--~Pe~~~~~~~g~~~~----~g~~~~~~~~~p~yr~~~~~~~ 116 (374)
T PF02449_consen 46 FSWLDRVLDLAAKHGIKVILGTPTAAP---PAWLYDK--YPEILPVDADGRRRG----FGSRQHYCPNSPAYREYARRFI 116 (374)
T ss_dssp -HHHHHHHHHHHCTT-EEEEEECTTTS----HHHHCC--SGCCC-B-TTTSBEE----CCCSTT-HCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccCeEEEEeccccc---ccchhhh--cccccccCCCCCcCc----cCCccccchhHHHHHHHHHHHH
Confidence 445789999999999999986642211 1011111 012233344553321 2333456788899888877777
Q ss_pred HHHHh-----cCccEEEecCCCCcc
Q 022976 103 KDFIY-----NGVDGIWNDMNEPAV 122 (289)
Q Consensus 103 ~~~~~-----~Gvdg~w~D~~E~~~ 122 (289)
+.+.+ -.|-||-+| ||+..
T Consensus 117 ~~l~~~y~~~p~vi~~~i~-NE~~~ 140 (374)
T PF02449_consen 117 RALAERYGDHPAVIGWQID-NEPGY 140 (374)
T ss_dssp HHHHHHHTTTTTEEEEEEC-CSTTC
T ss_pred HHHHhhccccceEEEEEec-cccCc
Confidence 66542 237788887 77654
No 83
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=43.31 E-value=64 Score=29.37 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHHHHH-hcCccEEEecCC
Q 022976 90 TQSKVRSWWGSLVKDFI-YNGVDGIWNDMN 118 (289)
Q Consensus 90 tnp~a~~ww~~~~~~~~-~~Gvdg~w~D~~ 118 (289)
.+|++|+-+.+.+.+++ +.|+||+-+|.-
T Consensus 83 ~~~~~r~~fi~~iv~~l~~~~~DGidiDwE 112 (313)
T cd02874 83 SNPEARQRLINNILALAKKYGYDGVNIDFE 112 (313)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCcEEEecc
Confidence 46788877766665555 799999999973
No 84
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=43.17 E-value=27 Score=24.89 Aligned_cols=32 Identities=25% Similarity=0.205 Sum_probs=20.0
Q ss_pred CcccccCCCCCCChHHHHHHHHHCCCeEEEeeCC
Q 022976 13 FVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDP 46 (289)
Q Consensus 13 ~~~f~~d~~~FPdp~~~i~~L~~~g~k~~~~v~P 46 (289)
+..+..|. |-.+++.|+.||++|.+++-.++-
T Consensus 27 ~~v~~iD~--~~~~~~~I~~L~~~G~~vicY~s~ 58 (74)
T PF03537_consen 27 VDVVVIDL--FDFSKEEIARLKAQGKKVICYFSI 58 (74)
T ss_dssp -SEEEE-S--BS--HHHHHHHHHTT-EEEEEEES
T ss_pred CCEEEECC--ccCCHHHHHHHHHCCCEEEEEEeC
Confidence 33445554 446689999999999988877663
No 85
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=42.83 E-value=23 Score=30.54 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=33.5
Q ss_pred CcccccCCCCCCChHHHHHHHHHCCCeEEEeeCCeeccC
Q 022976 13 FVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHE 51 (289)
Q Consensus 13 ~~~f~~d~~~FPdp~~~i~~L~~~g~k~~~~v~P~i~~~ 51 (289)
-.-|||.-+.=.++..+++++|++|+|+.+.+.|.-..+
T Consensus 88 as~~tfH~E~~q~~~~lv~~ir~~Gmk~G~alkPgT~Ve 126 (224)
T KOG3111|consen 88 ASLFTFHYEATQKPAELVEKIREKGMKVGLALKPGTPVE 126 (224)
T ss_pred cceEEEEEeeccCHHHHHHHHHHcCCeeeEEeCCCCcHH
Confidence 445888877778899999999999999999999986664
No 86
>cd08584 PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=42.04 E-value=24 Score=30.26 Aligned_cols=40 Identities=25% Similarity=0.325 Sum_probs=28.4
Q ss_pred ccccchhhccc-CcccccCCCCCCChHHHHHHHHHCCCeEEEeeCCeec
Q 022976 2 LYGWILTTWMD-FVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIK 49 (289)
Q Consensus 2 ~~~~~~~~w~d-~~~f~~d~~~FPdp~~~i~~L~~~g~k~~~~v~P~i~ 49 (289)
||+=.+-+|+| +.. ++--++.++++.++|.|+++ |.|-+-
T Consensus 120 ~~~~~~~VW~D~f~~-------~~~~~~~~~~~~~~~~~~c~-VSpELh 160 (192)
T cd08584 120 LYEKADWVWIDSFTS-------LWLDNDLILKLLKAGKKICL-VSPELH 160 (192)
T ss_pred hhccccEEEEecccc-------cCCCHHHHHHHHHCCcEEEE-ECHHHc
Confidence 45556678998 422 33348899999999999988 666543
No 87
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=40.90 E-value=1.3e+02 Score=27.33 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=20.0
Q ss_pred CCCChHHHHHHHHHCCCeEEEeeC
Q 022976 22 RFPDPKSLAADLHLNGFKAIWMLD 45 (289)
Q Consensus 22 ~FPdp~~~i~~L~~~g~k~~~~v~ 45 (289)
..|...+-|+.++++|+||++.|-
T Consensus 57 ~c~~~~~dI~~cq~~G~KVlLSIG 80 (280)
T cd02877 57 NCPQLGADIKHCQSKGKKVLLSIG 80 (280)
T ss_pred cchhHHHHHHHHHHCCCEEEEEcc
Confidence 346778999999999999999664
No 88
>smart00642 Aamy Alpha-amylase domain.
Probab=40.58 E-value=28 Score=28.91 Aligned_cols=22 Identities=27% Similarity=0.228 Sum_probs=18.4
Q ss_pred hHHHHHHHHHCCCeEEEeeCCe
Q 022976 26 PKSLAADLHLNGFKAIWMLDPG 47 (289)
Q Consensus 26 p~~~i~~L~~~g~k~~~~v~P~ 47 (289)
.++|++++|++|+++++=+.|.
T Consensus 72 ~~~lv~~~h~~Gi~vilD~V~N 93 (166)
T smart00642 72 FKELVDAAHARGIKVILDVVIN 93 (166)
T ss_pred HHHHHHHHHHCCCEEEEEECCC
Confidence 4789999999999999866543
No 89
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=40.45 E-value=31 Score=30.06 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=28.2
Q ss_pred hccc-CcccccCCCCCCChHHHHHHHHHCCCeEEEee
Q 022976 9 TWMD-FVVSLLTRHRFPDPKSLAADLHLNGFKAIWML 44 (289)
Q Consensus 9 ~w~d-~~~f~~d~~~FPdp~~~i~~L~~~g~k~~~~v 44 (289)
+|.+ |..-.....-||+-.++++.||++|+++.+..
T Consensus 82 iw~~~Y~~~~~~~~lypgv~e~L~~Lk~~G~~l~I~S 118 (220)
T TIGR01691 82 IWRQGYESGELTSHLYPDVPPALEAWLQLGLRLAVYS 118 (220)
T ss_pred HHHHHHhcCCcccCcCcCHHHHHHHHHHCCCEEEEEe
Confidence 5666 55555556789999999999999999987643
No 90
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=38.10 E-value=96 Score=29.11 Aligned_cols=60 Identities=20% Similarity=0.223 Sum_probs=40.0
Q ss_pred CCCh-HHHHHHHHHCCCeEEEeeCCeeccCCCccccccccccceeeecCCCCceeeeecCCcccCCCCCCHHHHHHHHHH
Q 022976 23 FPDP-KSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSL 101 (289)
Q Consensus 23 FPdp-~~~i~~L~~~g~k~~~~v~P~i~~~~~~~~y~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~ 101 (289)
|-++ ++++..-|++|+|+++.. ... .....+|+.|+=|.+.
T Consensus 62 ~~~~~~~~~~~A~~~~v~v~~~~--------~~~------------------------------~~~l~~~~~R~~fi~s 103 (358)
T cd02875 62 FGDIDDELLCYAHSKGVRLVLKG--------DVP------------------------------LEQISNPTYRTQWIQQ 103 (358)
T ss_pred cCCCCHHHHHHHHHcCCEEEEEC--------ccC------------------------------HHHcCCHHHHHHHHHH
Confidence 4443 689999999999988521 000 0124578888766555
Q ss_pred H-HHHHhcCccEEEecCCCC
Q 022976 102 V-KDFIYNGVDGIWNDMNEP 120 (289)
Q Consensus 102 ~-~~~~~~Gvdg~w~D~~E~ 120 (289)
+ +-+.+.|+||+-+|.--|
T Consensus 104 iv~~~~~~gfDGIdIDwE~p 123 (358)
T cd02875 104 KVELAKSQFMDGINIDIEQP 123 (358)
T ss_pred HHHHHHHhCCCeEEEcccCC
Confidence 5 444589999999997543
No 91
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=37.05 E-value=1.4e+02 Score=27.65 Aligned_cols=87 Identities=20% Similarity=0.202 Sum_probs=49.9
Q ss_pred CCCCChHHHHHHHHHCCCeEEEeeC----CeeccCCCccccccccccceeeecCCCCceeeeecC------CcccCCCCC
Q 022976 21 HRFPDPKSLAADLHLNGFKAIWMLD----PGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWP------GPCVFPDYT 90 (289)
Q Consensus 21 ~~FPdp~~~i~~L~~~g~k~~~~v~----P~i~~~~~~~~y~~~~~~~~~v~~~~g~~~~~~~w~------g~~~~~Dft 90 (289)
+.|-|.+-+++++|++|+.+|.=+. -.+....+ |+-++ .. +|+|..+-.-. ..-+++|-.
T Consensus 121 ~~f~Di~~~iKkaKe~giY~IARiVvFKD~~l~~~n~---fk~av------~~-~gKpw~~~~ngaLrKe~~~ehWVd~y 190 (400)
T COG1306 121 NKFKDIEPVIKKAKENGIYAIARIVVFKDTILAKENP---FKIAV------YK-DGKPWKAFTNGALRKESDGEHWVDAY 190 (400)
T ss_pred ccccccHHHHHHHHhcCeEEEEEEEEeeeeeEEeecC---ceEEE------Ec-CCCcchhhhcccccccccceeeeccc
Confidence 3589999999999999997654322 22222111 11111 11 12322110000 012457888
Q ss_pred CHHHHHHHHHHHHHHHhcCccEEEecC
Q 022976 91 QSKVRSWWGSLVKDFIYNGVDGIWNDM 117 (289)
Q Consensus 91 np~a~~ww~~~~~~~~~~Gvdg~w~D~ 117 (289)
+|+.-++--..-|...+-|+|-+-+|.
T Consensus 191 ~~~~WeYNvtIAKEa~~fGfdEiQFDY 217 (400)
T COG1306 191 DKNLWEYNVTIAKEAAKFGFDEIQFDY 217 (400)
T ss_pred chhhhhhhHHHHHHHHHcCccceeeeE
Confidence 888766655555777789999998884
No 92
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=36.56 E-value=1.2e+02 Score=31.16 Aligned_cols=74 Identities=14% Similarity=0.004 Sum_probs=46.2
Q ss_pred HHHCCCeEEEeeCCe-eccCCCccccccccccceeeecCCCCce-eeeecCCcccCCCCCCHHHHHHHHHHHHHHHh-cC
Q 022976 33 LHLNGFKAIWMLDPG-IKHEDGYFVYDSGSKIDVWIQKADGTPF-IGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY-NG 109 (289)
Q Consensus 33 L~~~g~k~~~~v~P~-i~~~~~~~~y~~~~~~~~~v~~~~g~~~-~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~-~G 109 (289)
=|..|+||-.|+.|. +........ ..+. +.++.+. +...|.+. +|-+.|++++|-.+.+..+.. ..
T Consensus 390 ~~r~~v~v~AWmp~~~~~~~~~~~~---~~~~-----~~~~~~~~~~~~~~~r---l~P~~pe~r~~i~~i~~dla~~~~ 458 (671)
T PRK14582 390 RTRAGVNVYAWMPVLSFDLDPTLPR---VKRL-----DTGEGKAQIHPEQYRR---LSPFDDRVRAQVGMLYEDLAGHAA 458 (671)
T ss_pred HHhhCCEEEEeccceeeccCCCcch---hhhc-----cccCCccccCCCCCcC---CCCCCHHHHHHHHHHHHHHHHhCC
Confidence 456799999999987 433222111 1110 1111111 11123222 888999999999999999885 68
Q ss_pred ccEEEecC
Q 022976 110 VDGIWNDM 117 (289)
Q Consensus 110 vdg~w~D~ 117 (289)
|||+-+|-
T Consensus 459 ~dGilf~D 466 (671)
T PRK14582 459 FDGILFHD 466 (671)
T ss_pred CceEEecc
Confidence 99999874
No 93
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=35.68 E-value=80 Score=27.77 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=14.3
Q ss_pred HHHHHHhcCccEEEecCC
Q 022976 101 LVKDFIYNGVDGIWNDMN 118 (289)
Q Consensus 101 ~~~~~~~~Gvdg~w~D~~ 118 (289)
.++.+++.||||+..|.-
T Consensus 222 ~~~~l~~~GVdgIiTD~p 239 (249)
T PRK09454 222 RARELLRWGVDCICTDRI 239 (249)
T ss_pred HHHHHHHcCCCEEEeCCh
Confidence 456778899999999844
No 94
>PRK06769 hypothetical protein; Validated
Probab=35.12 E-value=49 Score=27.41 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=19.8
Q ss_pred CCCChHHHHHHHHHCCCeEEEe
Q 022976 22 RFPDPKSLAADLHLNGFKAIWM 43 (289)
Q Consensus 22 ~FPdp~~~i~~L~~~g~k~~~~ 43 (289)
-||+.+++++.||++|+++.+.
T Consensus 29 ~~pgv~e~L~~Lk~~G~~l~I~ 50 (173)
T PRK06769 29 LFPFTKASLQKLKANHIKIFSF 50 (173)
T ss_pred ECCCHHHHHHHHHHCCCEEEEE
Confidence 5899999999999999998774
No 95
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=32.47 E-value=1.4e+02 Score=26.34 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHHHH-hcCccEEEecCCC
Q 022976 90 TQSKVRSWWGSLVKDFI-YNGVDGIWNDMNE 119 (289)
Q Consensus 90 tnp~a~~ww~~~~~~~~-~~Gvdg~w~D~~E 119 (289)
.+|+.|+=+.+.+.+++ +.|+||+-+|.-.
T Consensus 79 ~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~ 109 (253)
T cd06545 79 NDPAKRKALVDKIINYVVSYNLDGIDVDLEG 109 (253)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCceeEEeec
Confidence 45777776666665444 7999999999743
No 96
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=30.90 E-value=62 Score=29.31 Aligned_cols=39 Identities=23% Similarity=0.516 Sum_probs=22.4
Q ss_pred HHHHHHHCCCeEEEe-eCCeeccCCCc-cccccccccceeeecC
Q 022976 29 LAADLHLNGFKAIWM-LDPGIKHEDGY-FVYDSGSKIDVWIQKA 70 (289)
Q Consensus 29 ~i~~L~~~g~k~~~~-v~P~i~~~~~~-~~y~~~~~~~~~v~~~ 70 (289)
+-..|+..|+|+... ++|+++.+.+. .-|+.| ..||.+.
T Consensus 23 ig~lLk~~G~~V~~~K~DPYlNvD~GtmsP~qHG---EVfVt~D 63 (276)
T PF06418_consen 23 IGRLLKSRGYKVTMIKIDPYLNVDPGTMSPYQHG---EVFVTDD 63 (276)
T ss_dssp HHHHHHCTT--EEEEEEE-SSSSSCCCS-CCTCS----EEE-TT
T ss_pred HHHHHHhCCeeeeeeeeccccccCCCCCCCcCcc---ceeEecC
Confidence 446789999999766 99999998651 123333 4666653
No 97
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=30.16 E-value=65 Score=26.57 Aligned_cols=22 Identities=9% Similarity=0.122 Sum_probs=19.4
Q ss_pred CCCChHHHHHHHHHCCCeEEEe
Q 022976 22 RFPDPKSLAADLHLNGFKAIWM 43 (289)
Q Consensus 22 ~FPdp~~~i~~L~~~g~k~~~~ 43 (289)
-||.-.++++.||++|+++.+.
T Consensus 27 ~~pgv~e~L~~Lk~~G~~l~i~ 48 (176)
T TIGR00213 27 FIDGVIDALRELKKMGYALVLV 48 (176)
T ss_pred ECCCHHHHHHHHHHCCCEEEEE
Confidence 3899999999999999998773
No 98
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=29.97 E-value=1.4e+02 Score=24.37 Aligned_cols=17 Identities=35% Similarity=0.530 Sum_probs=13.0
Q ss_pred HHHHHHHhcCccEEEec
Q 022976 100 SLVKDFIYNGVDGIWND 116 (289)
Q Consensus 100 ~~~~~~~~~Gvdg~w~D 116 (289)
++++.+.+.||||+-.|
T Consensus 172 ~~~~~~~~~GVdgI~TD 188 (189)
T cd08556 172 EDARRLLALGVDGIITD 188 (189)
T ss_pred HHHHHHHHCCCCEEecC
Confidence 45666778899998776
No 99
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones]
Probab=29.95 E-value=22 Score=32.84 Aligned_cols=11 Identities=55% Similarity=0.933 Sum_probs=9.6
Q ss_pred CccccCCCCCC
Q 022976 221 PFSGPDIGGFD 231 (289)
Q Consensus 221 p~~g~DIgGf~ 231 (289)
+++|+|||||.
T Consensus 131 iMfGPDICG~~ 141 (406)
T KOG0674|consen 131 IMFGPDICGFG 141 (406)
T ss_pred cccCCcccCCC
Confidence 57899999995
No 100
>cd08613 GDPD_GDE4_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial homologs of mammalian GDE4, a transmembrane protein whose cellular function has not been elucidated yet.
Probab=29.85 E-value=1.2e+02 Score=28.00 Aligned_cols=20 Identities=20% Similarity=0.155 Sum_probs=16.6
Q ss_pred HHHHHHHhcCccEEEecCCC
Q 022976 100 SLVKDFIYNGVDGIWNDMNE 119 (289)
Q Consensus 100 ~~~~~~~~~Gvdg~w~D~~E 119 (289)
+.++.+.+.|+||+|.|--|
T Consensus 286 ~~~~~l~~~~~~gi~T~r~~ 305 (309)
T cd08613 286 EDLKRLPEGFTGYIWTNKIE 305 (309)
T ss_pred HHHHHHHhhCCCeEEeCCHh
Confidence 46788889999999998544
No 101
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=29.57 E-value=1.1e+02 Score=27.49 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=20.9
Q ss_pred HHHHHHHHCCCeEEEe-eCCeeccCCC
Q 022976 28 SLAADLHLNGFKAIWM-LDPGIKHEDG 53 (289)
Q Consensus 28 ~~i~~L~~~g~k~~~~-v~P~i~~~~~ 53 (289)
.+-..|+..|+++... ++|+++.+.+
T Consensus 21 s~g~ll~~~g~~v~~~K~DpYlNvd~G 47 (255)
T cd03113 21 SLGRLLKARGLKVTAQKLDPYLNVDPG 47 (255)
T ss_pred HHHHHHHHCCCeEEEEeecccccCCCC
Confidence 3446799999999766 9999998764
No 102
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=29.37 E-value=67 Score=25.62 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=20.0
Q ss_pred CCCChHHHHHHHHHCCCeEEEee
Q 022976 22 RFPDPKSLAADLHLNGFKAIWML 44 (289)
Q Consensus 22 ~FPdp~~~i~~L~~~g~k~~~~v 44 (289)
-||+-.++++.||++|+++++..
T Consensus 28 ~~~g~~~~l~~Lk~~g~~~~I~S 50 (147)
T TIGR01656 28 LRPGAVPALLTLRAAGYTVVVVT 50 (147)
T ss_pred EcCChHHHHHHHHHCCCEEEEEe
Confidence 38999999999999999987743
No 103
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=29.24 E-value=70 Score=26.32 Aligned_cols=22 Identities=14% Similarity=0.067 Sum_probs=19.4
Q ss_pred CCCChHHHHHHHHHCCCeEEEe
Q 022976 22 RFPDPKSLAADLHLNGFKAIWM 43 (289)
Q Consensus 22 ~FPdp~~~i~~L~~~g~k~~~~ 43 (289)
-||+-.++++.|+++|+++++.
T Consensus 30 ~~pgv~e~L~~L~~~g~~l~Iv 51 (161)
T TIGR01261 30 FEKGVIPALLKLKKAGYKFVMV 51 (161)
T ss_pred ECCCHHHHHHHHHHCCCeEEEE
Confidence 4899999999999999998763
No 104
>PF07611 DUF1574: Protein of unknown function (DUF1574); InterPro: IPR011468 This is a family of hypothetical proteins found in Leptospira interrogans and other bacteria.
Probab=29.19 E-value=29 Score=32.61 Aligned_cols=36 Identities=11% Similarity=0.081 Sum_probs=31.0
Q ss_pred CcccccCCCCCCChHHHHHHHHHCCCeEEEeeCCeec
Q 022976 13 FVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIK 49 (289)
Q Consensus 13 ~~~f~~d~~~FPdp~~~i~~L~~~g~k~~~~v~P~i~ 49 (289)
+++|+.+++.+.-.+++++.++++|+++++| .|-|.
T Consensus 241 l~~f~~s~~q~~F~e~~L~~ake~~I~~vl~-~P~V~ 276 (345)
T PF07611_consen 241 LSSFTFSETQFFFLEKFLKLAKENGIPVVLW-WPKVS 276 (345)
T ss_pred hcCCCCChhHHHHHHHHHHHHHHcCCcEEEE-EeccC
Confidence 7889999999999999999999999999884 44443
No 105
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=28.52 E-value=56 Score=26.99 Aligned_cols=81 Identities=21% Similarity=0.296 Sum_probs=40.7
Q ss_pred HHHHHHHhhcCCCCcEEEEcccccCCCccc---eeeCCCCCCCchHHHHHHHHHHHhhccCCCccccCCCCCCCCCC-hh
Q 022976 162 STYEGMKLADKDKRPFVLTRAGFIGSQRYA---ATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNAT-PR 237 (289)
Q Consensus 162 a~~~~~~~~~~~~r~~~~sRs~~~G~qry~---~~W~GD~~s~W~~L~~~I~~~l~~~l~G~p~~g~DIgGf~g~~~-~E 237 (289)
.||+.+++..|++|.++|=|.--.-.-.-+ -.-.||. +..++. +..-=.+..+.+.|||+ ++++ ..
T Consensus 41 RTydHLRe~~p~R~I~vfDR~l~~hp~~~P~~~~~ilGdi-------~~tl~~-~~~~g~~a~laHaD~G~--g~~~~d~ 110 (160)
T PF12692_consen 41 RTYDHLREIFPDRRIYVFDRALACHPSSTPPEEDLILGDI-------RETLPA-LARFGAGAALAHADIGT--GDKEKDD 110 (160)
T ss_dssp HHHHHHHHH--SS-EEEEESS--S-GGG---GGGEEES-H-------HHHHHH-HHHH-S-EEEEEE------S-HHHHH
T ss_pred ccHHHHHHhCCCCeEEEEeeecccCCCCCCchHheeeccH-------HHHhHH-HHhcCCceEEEEeecCC--CCcchhH
Confidence 367889999999999999996322111111 2566775 566666 55555667788999996 3433 34
Q ss_pred HHHHHHHhhhhccccc
Q 022976 238 LFGRWMGIGAMFPFCR 253 (289)
Q Consensus 238 L~~RW~Q~g~f~P~~R 253 (289)
-..+|+. -..-|+|.
T Consensus 111 a~a~~ls-pli~~~la 125 (160)
T PF12692_consen 111 ATAAWLS-PLIAPVLA 125 (160)
T ss_dssp HHHHHHH-HHHGGGEE
T ss_pred HHHHhhh-HHHHHHhc
Confidence 4566653 34445554
No 106
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=27.62 E-value=77 Score=26.16 Aligned_cols=22 Identities=18% Similarity=0.448 Sum_probs=19.3
Q ss_pred CCChHHHHHHHHHCCCeEEEee
Q 022976 23 FPDPKSLAADLHLNGFKAIWML 44 (289)
Q Consensus 23 FPdp~~~i~~L~~~g~k~~~~v 44 (289)
||+-.++++.|+++|+++.+..
T Consensus 44 ~pgv~e~L~~Lk~~G~~l~I~T 65 (166)
T TIGR01664 44 YPEIPAKLQELDDEGYKIVIFT 65 (166)
T ss_pred cCCHHHHHHHHHHCCCEEEEEe
Confidence 6889999999999999987743
No 107
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=27.57 E-value=80 Score=23.71 Aligned_cols=25 Identities=12% Similarity=0.236 Sum_probs=20.5
Q ss_pred CCCCCCChHHHHHHHHHCCCeEEEe
Q 022976 19 TRHRFPDPKSLAADLHLNGFKAIWM 43 (289)
Q Consensus 19 d~~~FPdp~~~i~~L~~~g~k~~~~ 43 (289)
..+-+|...+.++.|+++|.++++.
T Consensus 12 g~~~ipga~e~l~~L~~~g~~~~~l 36 (101)
T PF13344_consen 12 GNEPIPGAVEALDALRERGKPVVFL 36 (101)
T ss_dssp TTEE-TTHHHHHHHHHHTTSEEEEE
T ss_pred CCCcCcCHHHHHHHHHHcCCCEEEE
Confidence 4566899999999999999988773
No 108
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=27.09 E-value=75 Score=27.58 Aligned_cols=49 Identities=14% Similarity=0.202 Sum_probs=37.2
Q ss_pred hhHHHHHHHhhhhcccccccCCCCCCCCCccccChhhHHHHHHHHHHHh
Q 022976 236 PRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAFF 284 (289)
Q Consensus 236 ~EL~~RW~Q~g~f~P~~R~h~~~~~~~~ePw~~~~~~~~~~r~~i~~~~ 284 (289)
-|+|.+|+-.|.++-+.-..-..-..+-.||.++..-.+++.++++.|=
T Consensus 163 l~~~~pllsaG~Y~vVeDs~v~dlp~~~~p~~~g~gP~~AVe~ylr~~p 211 (237)
T COG3510 163 LKLLAPLLSAGDYLVVEDSNVNDLPGPVLPWRFGGGPYEAVEAYLREFP 211 (237)
T ss_pred HHHhhhHhhcCceEEEecccccCCCCcccchhcCCChHHHHHHHHHhCC
Confidence 4899999999999988765443333468899998877777777777663
No 109
>PLN02219 probable galactinol--sucrose galactosyltransferase 2
Probab=26.37 E-value=73 Score=33.08 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHhcCccEEEecCCC
Q 022976 92 SKVRSWWGSLVKDFIYNGVDGIWNDMNE 119 (289)
Q Consensus 92 p~a~~ww~~~~~~~~~~Gvdg~w~D~~E 119 (289)
+++..+|.+.+..|.+.||||+|.|...
T Consensus 362 ~~~~~FYd~~hsyLas~GVDgVKVDvQ~ 389 (775)
T PLN02219 362 KKVFNFYNELHAYLASCGVDGVKVDVQN 389 (775)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEchhh
Confidence 5577999999888889999999999654
No 110
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=25.63 E-value=90 Score=24.94 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=22.3
Q ss_pred CChHHHHHHHHHCCCeEEEeeCCeecc
Q 022976 24 PDPKSLAADLHLNGFKAIWMLDPGIKH 50 (289)
Q Consensus 24 Pdp~~~i~~L~~~g~k~~~~v~P~i~~ 50 (289)
|+.++.+++|+++|+|-++.+.|.+..
T Consensus 77 P~~~~~l~~l~~~G~~~i~v~p~gF~~ 103 (135)
T cd00419 77 PSTDDALEELAKEGVKNVVVVPIGFVS 103 (135)
T ss_pred CCHHHHHHHHHHcCCCeEEEECCcccc
Confidence 666899999999999988888884433
No 111
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=25.05 E-value=97 Score=23.89 Aligned_cols=25 Identities=20% Similarity=0.429 Sum_probs=21.2
Q ss_pred CCCCChHHHHHHHHHCCCeEEEeeC
Q 022976 21 HRFPDPKSLAADLHLNGFKAIWMLD 45 (289)
Q Consensus 21 ~~FPdp~~~i~~L~~~g~k~~~~v~ 45 (289)
.-||+-.+.++.|++.|+++++..+
T Consensus 25 ~~~~~v~~~l~~L~~~g~~l~i~Sn 49 (132)
T TIGR01662 25 ILYPEVPDALAELKEAGYKVVIVTN 49 (132)
T ss_pred eeCCCHHHHHHHHHHCCCEEEEEEC
Confidence 5699999999999999999877433
No 112
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=24.83 E-value=1.2e+02 Score=28.36 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=17.2
Q ss_pred CCCCh-HHHHHHHHHCCCeEEEe
Q 022976 22 RFPDP-KSLAADLHLNGFKAIWM 43 (289)
Q Consensus 22 ~FPdp-~~~i~~L~~~g~k~~~~ 43 (289)
...-| .+.++..|++|++|+..
T Consensus 43 ~~~iPp~~~idaAHknGV~Vlgt 65 (339)
T cd06547 43 AVTIPPADWINAAHRNGVPVLGT 65 (339)
T ss_pred cccCCCcHHHHHHHhcCCeEEEE
Confidence 33344 89999999999999754
No 113
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=24.43 E-value=1e+02 Score=29.51 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=19.6
Q ss_pred cCCCCCCChHHHHHHHHHCCCeEEEee
Q 022976 18 LTRHRFPDPKSLAADLHLNGFKAIWML 44 (289)
Q Consensus 18 ~d~~~FPdp~~~i~~L~~~g~k~~~~v 44 (289)
|+++++ ||.+..+-+|+.|.|+++.|
T Consensus 49 Ftae~w-DP~eWar~fK~aGAKyvilv 74 (430)
T COG3669 49 FTAENW-DPREWARLFKEAGAKYVILV 74 (430)
T ss_pred cCcccC-CHHHHHHHHHHcCCcEEEEe
Confidence 333333 78999999999999976644
No 114
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=23.66 E-value=71 Score=29.52 Aligned_cols=37 Identities=22% Similarity=-0.029 Sum_probs=23.8
Q ss_pred cccccCCCCCCChHHHHHHHHHCCCeEEEeeCCeeccCC
Q 022976 14 VVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHED 52 (289)
Q Consensus 14 ~~f~~d~~~FPdp~~~i~~L~~~g~k~~~~v~P~i~~~~ 52 (289)
+.|.|. -.-|...+++..+++|++|++...|+|+.+-
T Consensus 55 g~~df~--g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~ 91 (319)
T PF01301_consen 55 GQFDFT--GNRDLDRFLDLAQENGLYVILRPGPYICAEW 91 (319)
T ss_dssp TB---S--GGG-HHHHHHHHHHTT-EEEEEEES---TTB
T ss_pred Cccccc--chhhHHHHHHHHHHcCcEEEecccceecccc
Confidence 344553 2368899999999999999999999999864
No 115
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=23.65 E-value=3e+02 Score=24.23 Aligned_cols=35 Identities=17% Similarity=0.165 Sum_probs=28.3
Q ss_pred cccCCCC-CCChHHHHHHHHHCCCeEEEeeCCeecc
Q 022976 16 SLLTRHR-FPDPKSLAADLHLNGFKAIWMLDPGIKH 50 (289)
Q Consensus 16 f~~d~~~-FPdp~~~i~~L~~~g~k~~~~v~P~i~~ 50 (289)
.++..+. ..++..+++.+|+.|.|..+.++|.-..
T Consensus 86 it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~ 121 (229)
T PRK09722 86 ITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPV 121 (229)
T ss_pred EEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCH
Confidence 4666664 4678999999999999999999998544
No 116
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=23.12 E-value=89 Score=25.14 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.8
Q ss_pred CCChHHHHHHHHHCCCeEEEee
Q 022976 23 FPDPKSLAADLHLNGFKAIWML 44 (289)
Q Consensus 23 FPdp~~~i~~L~~~g~k~~~~v 44 (289)
|||-+.++..|+++|+.++...
T Consensus 46 Y~Di~rIL~dLk~~GVtl~~AS 67 (144)
T KOG4549|consen 46 YDDIRRILVDLKKLGVTLIHAS 67 (144)
T ss_pred ccchhHHHHHHHhcCcEEEEec
Confidence 8999999999999999988753
No 117
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=22.69 E-value=4.9e+02 Score=23.71 Aligned_cols=99 Identities=17% Similarity=0.235 Sum_probs=57.9
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCcEEEEcccccCCCccceeeCCCCCCCchHHHHHHHHHHHhhccCCCcccc-CCCCC
Q 022976 152 HNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGP-DIGGF 230 (289)
Q Consensus 152 hN~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~qry~~~W~GD~~s~W~~L~~~I~~~l~~~l~G~p~~g~-DIgGf 230 (289)
-|.+.+.+.+++.++.++. +.|+|+.-|- +.-+|. | -+.+...+..+.. -+.+|..-+ |=|
T Consensus 23 fNv~n~e~~~avi~AAee~---~sPvIlq~~~--~~~~~~----g-----~~~~~~~~~~~A~--~~~VPValHLDH~-- 84 (284)
T PRK12857 23 FNCNNMEIVQAIVAAAEAE---KSPVIIQASQ--GAIKYA----G-----IEYISAMVRTAAE--KASVPVALHLDHG-- 84 (284)
T ss_pred EEeCCHHHHHHHHHHHHHh---CCCEEEEech--hHhhhC----C-----HHHHHHHHHHHHH--HCCCCEEEECCCC--
Confidence 3566667888988888764 4788876432 222222 1 1123333333332 346676544 444
Q ss_pred CCCCChhHHHHHHHhhhhcccccccCCCCCCCCCccccChhhHHHHHHHHH
Q 022976 231 DGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVII 281 (289)
Q Consensus 231 ~g~~~~EL~~RW~Q~g~f~P~~R~h~~~~~~~~ePw~~~~~~~~~~r~~i~ 281 (289)
.+.|.+.|++..| |+.+|--- +..|+ ++..+..|++++
T Consensus 85 ---~~~e~i~~ai~~G-ftSVM~Dg------S~lp~---eeNi~~T~~vv~ 122 (284)
T PRK12857 85 ---TDFEQVMKCIRNG-FTSVMIDG------SKLPL---EENIALTKKVVE 122 (284)
T ss_pred ---CCHHHHHHHHHcC-CCeEEEeC------CCCCH---HHHHHHHHHHHH
Confidence 3789999999987 78888542 35665 445556665554
No 118
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=22.65 E-value=84 Score=27.04 Aligned_cols=36 Identities=25% Similarity=0.237 Sum_probs=28.3
Q ss_pred cccCCCCCCChHHHHHHHHHCCCeEEEeeCCeeccC
Q 022976 16 SLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHE 51 (289)
Q Consensus 16 f~~d~~~FPdp~~~i~~L~~~g~k~~~~v~P~i~~~ 51 (289)
.++..+..+++..+++.+|+.|.|..+.++|.-..+
T Consensus 84 i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~ 119 (201)
T PF00834_consen 84 ITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVE 119 (201)
T ss_dssp EEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GG
T ss_pred EEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCch
Confidence 355556778999999999999999999999976554
No 119
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=22.56 E-value=1.1e+02 Score=29.79 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=18.8
Q ss_pred HHHHHCCCeEEEe-eCCeeccCCC
Q 022976 31 ADLHLNGFKAIWM-LDPGIKHEDG 53 (289)
Q Consensus 31 ~~L~~~g~k~~~~-v~P~i~~~~~ 53 (289)
-.||..|.||.-+ ++|+++.+.+
T Consensus 25 ~lLKs~Gl~VTsIKIDPYlN~DAG 48 (585)
T KOG2387|consen 25 VLLKSCGLRVTSIKIDPYLNIDAG 48 (585)
T ss_pred HHHHhcCceeEEEEeccceeccCc
Confidence 3689999999755 9999998754
No 120
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=22.48 E-value=95 Score=27.57 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=23.7
Q ss_pred CCCChHHHHHHHHHCCCeEEEeeCCeec
Q 022976 22 RFPDPKSLAADLHLNGFKAIWMLDPGIK 49 (289)
Q Consensus 22 ~FPdp~~~i~~L~~~g~k~~~~v~P~i~ 49 (289)
.+...+..++.||+.|++|.+-++|-..
T Consensus 108 ~~~~l~~~i~~l~~~gI~VSLFiDP~~~ 135 (237)
T TIGR00559 108 LKDKLCELVKRFHAAGIEVSLFIDADKD 135 (237)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeCCCHH
Confidence 4556789999999999999999998743
No 121
>PLN02982 galactinol-raffinose galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl compounds
Probab=22.20 E-value=97 Score=32.42 Aligned_cols=29 Identities=14% Similarity=0.279 Sum_probs=23.7
Q ss_pred CHH-HHHHHHHHHHHHHhcCccEEEecCCC
Q 022976 91 QSK-VRSWWGSLVKDFIYNGVDGIWNDMNE 119 (289)
Q Consensus 91 np~-a~~ww~~~~~~~~~~Gvdg~w~D~~E 119 (289)
+|+ +.++|.+.+..|.+.||||+|.|...
T Consensus 463 ~P~~~~~FYd~~hsyLas~GVDgVKVDvQ~ 492 (865)
T PLN02982 463 HPSQAGDFYDSMHSYLASVGITGVKVDVIH 492 (865)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCeEEEchhh
Confidence 354 57888888888889999999999654
No 122
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=22.14 E-value=1e+02 Score=27.42 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=23.9
Q ss_pred CCCChHHHHHHHHHCCCeEEEeeCCeec
Q 022976 22 RFPDPKSLAADLHLNGFKAIWMLDPGIK 49 (289)
Q Consensus 22 ~FPdp~~~i~~L~~~g~k~~~~v~P~i~ 49 (289)
.+...+..++.||+.|+++.+-++|-..
T Consensus 111 ~~~~l~~~i~~L~~~gIrVSLFidP~~~ 138 (239)
T PRK05265 111 QFDKLKPAIARLKDAGIRVSLFIDPDPE 138 (239)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeCCCHH
Confidence 4566789999999999999999998753
No 123
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=21.80 E-value=1.2e+02 Score=19.59 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=17.8
Q ss_pred CCCChHHHHHHHHHCCCeEEE
Q 022976 22 RFPDPKSLAADLHLNGFKAIW 42 (289)
Q Consensus 22 ~FPdp~~~i~~L~~~g~k~~~ 42 (289)
.++.++..++.|+++|+.++.
T Consensus 13 G~k~~~~Q~~~L~~~Gi~~~~ 33 (47)
T PF13986_consen 13 GYKRPSKQIRWLRRNGIPFVV 33 (47)
T ss_pred CCCCHHHHHHHHHHCCCeeEE
Confidence 477889999999999997765
No 124
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=21.50 E-value=3.1e+02 Score=25.75 Aligned_cols=25 Identities=16% Similarity=0.048 Sum_probs=19.4
Q ss_pred CCCh--HHHHHHHHHCCCeEEEeeCCe
Q 022976 23 FPDP--KSLAADLHLNGFKAIWMLDPG 47 (289)
Q Consensus 23 FPdp--~~~i~~L~~~g~k~~~~v~P~ 47 (289)
|+.. ++.++.+|+.|.|+.+-++..
T Consensus 46 fs~~~l~e~i~~ah~~gkk~~V~~N~~ 72 (347)
T COG0826 46 FSVEDLAEAVELAHSAGKKVYVAVNTL 72 (347)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 5544 799999999999987766644
No 125
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=21.22 E-value=55 Score=26.20 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=18.5
Q ss_pred CCChHHHHHHHHHCCCeEEEeeCCe
Q 022976 23 FPDPKSLAADLHLNGFKAIWMLDPG 47 (289)
Q Consensus 23 FPdp~~~i~~L~~~g~k~~~~v~P~ 47 (289)
|-|.+-+++.|++.|+++++++-|.
T Consensus 35 y~Dl~l~L~~~k~~g~~~lfVi~Pv 59 (130)
T PF04914_consen 35 YDDLQLLLDVCKELGIDVLFVIQPV 59 (130)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE---
T ss_pred HHHHHHHHHHHHHcCCceEEEecCC
Confidence 5566889999999999999988876
No 126
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=21.21 E-value=1e+02 Score=27.44 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=20.1
Q ss_pred CCChHHHHHHHHHCCCeEEEeeCCeec
Q 022976 23 FPDPKSLAADLHLNGFKAIWMLDPGIK 49 (289)
Q Consensus 23 FPdp~~~i~~L~~~g~k~~~~v~P~i~ 49 (289)
....+..+++||+.|+++.+-++|-..
T Consensus 110 ~~~l~~~i~~L~~~gIrvSLFiDP~~~ 136 (239)
T PF03740_consen 110 RDRLKPVIKRLKDAGIRVSLFIDPDPE 136 (239)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE-S-HH
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCHH
Confidence 344588999999999999999999754
No 127
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=21.04 E-value=97 Score=23.92 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=13.2
Q ss_pred HHHHHHHHHCCCeEEEeeCCe
Q 022976 27 KSLAADLHLNGFKAIWMLDPG 47 (289)
Q Consensus 27 ~~~i~~L~~~g~k~~~~v~P~ 47 (289)
++-++.|+++|+|.|+..-|-
T Consensus 17 ~~d~~~la~~GfktVInlRpd 37 (110)
T PF04273_consen 17 PEDLAQLAAQGFKTVINLRPD 37 (110)
T ss_dssp HHHHHHHHHCT--EEEE-S-T
T ss_pred HHHHHHHHHCCCcEEEECCCC
Confidence 345669999999999977654
No 128
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=20.89 E-value=1.1e+02 Score=27.19 Aligned_cols=28 Identities=18% Similarity=0.309 Sum_probs=23.7
Q ss_pred CCCChHHHHHHHHHCCCeEEEeeCCeec
Q 022976 22 RFPDPKSLAADLHLNGFKAIWMLDPGIK 49 (289)
Q Consensus 22 ~FPdp~~~i~~L~~~g~k~~~~v~P~i~ 49 (289)
.+...+..++.||+.|++|.+-++|-..
T Consensus 108 ~~~~l~~~i~~l~~~gI~VSLFiDPd~~ 135 (234)
T cd00003 108 QAEKLKPIIERLKDAGIRVSLFIDPDPE 135 (234)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeCCCHH
Confidence 4556689999999999999999999753
No 129
>PF11308 GHL1-3: Glycosyl hydrolases related to GH101 family, GHL1-GHL3; InterPro: IPR021459 Some members in this family of proteins with unknown function are annotated as lipoproteins however this cannot be confirmed. Currently no function is known.
Probab=20.83 E-value=1.6e+02 Score=27.14 Aligned_cols=54 Identities=26% Similarity=0.369 Sum_probs=36.3
Q ss_pred ccccceeeecCCCCceeeeecCCc---ccCCCCCCHHHHHHHHHHHHHHHh-cCccEEEecC
Q 022976 60 GSKIDVWIQKADGTPFIGEVWPGP---CVFPDYTQSKVRSWWGSLVKDFIY-NGVDGIWNDM 117 (289)
Q Consensus 60 ~~~~~~~v~~~~g~~~~~~~w~g~---~~~~Dftnp~a~~ww~~~~~~~~~-~Gvdg~w~D~ 117 (289)
......-|+++||++..+..|.+. .+.+.+. ....++.++++++ .|++|+-+|-
T Consensus 70 ~~~~~~~v~~~dGt~~~gf~w~~g~~~~~~p~~~----~~~v~~r~~~i~~~~~~ns~FlDv 127 (307)
T PF11308_consen 70 GLYEDAAVRNADGTKKEGFRWGGGRYLNVCPTCA----LPYVKRRVEEILKGIGFNSWFLDV 127 (307)
T ss_pred cccccceeecCCCCCccceecCCcceeccCcccc----cHHHHHHHHHHHHhCCCCeEEEec
Confidence 344566778889998887777553 2224444 3455677777765 8899999984
No 130
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=20.79 E-value=84 Score=31.20 Aligned_cols=70 Identities=16% Similarity=0.189 Sum_probs=34.7
Q ss_pred HHHCCCeEEEeeCCeeccCCCccccccccccceeeecCC-CCc------ee-----eeecCCcccCCCCCCHHHHHHHHH
Q 022976 33 LHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKAD-GTP------FI-----GEVWPGPCVFPDYTQSKVRSWWGS 100 (289)
Q Consensus 33 L~~~g~k~~~~v~P~i~~~~~~~~y~~~~~~~~~v~~~~-g~~------~~-----~~~w~g~~~~~Dftnp~a~~ww~~ 100 (289)
.+++|++++.=+.-+|..++ .++. ....+|..+.+ |.| .. |+.|....--++-...+...||.+
T Consensus 221 A~~~~I~L~gDlpi~v~~ds-aDvW---a~~~~F~l~~~~GaP~~agvpPd~Fs~~GQ~WG~P~y~w~~l~~~gy~ww~~ 296 (513)
T TIGR00217 221 ANDMGIGLYGDLPVFVAYDS-ADVW---ADPELFCLRASAGAPKPAGLGPDYFLEQGQNWGLPPYDWNVLKARGYEWWIK 296 (513)
T ss_pred HhcCCcEEEEeCcceeCCCc-HHHH---hCHHHhCCCcccCCCCCCCCCCCcccccCCCCCCCCcCHHHHHhcCcHHHHH
Confidence 34467766665555566543 1111 12233333322 333 33 666744432222223445699999
Q ss_pred HHHHHH
Q 022976 101 LVKDFI 106 (289)
Q Consensus 101 ~~~~~~ 106 (289)
+++...
T Consensus 297 rlr~~~ 302 (513)
T TIGR00217 297 RLGANM 302 (513)
T ss_pred HHHHHH
Confidence 997654
No 131
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=20.48 E-value=1.2e+02 Score=31.20 Aligned_cols=39 Identities=23% Similarity=0.181 Sum_probs=31.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCccEEEecCCCCccc
Q 022976 85 VFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVF 123 (289)
Q Consensus 85 ~~~Dftnp~a~~ww~~~~~~~~~~Gvdg~w~D~~E~~~~ 123 (289)
--+|..||-+|+-.-++.+.=.+.|+||+-+|.++-..|
T Consensus 357 Qdlnhq~P~VRAILLEmQRRK~n~GaDGIRVDGgQDFk~ 395 (811)
T PF14872_consen 357 QDLNHQNPVVRAILLEMQRRKINTGADGIRVDGGQDFKF 395 (811)
T ss_pred ccccccChHHHHHHHHHHHhhcccCCceeEeccccccee
Confidence 458999999999888776655589999999999975444
No 132
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=20.19 E-value=1.3e+02 Score=29.83 Aligned_cols=72 Identities=19% Similarity=0.323 Sum_probs=35.7
Q ss_pred HHHHHCCCeEEEeeCCeeccCCCccccccccccceeeecCCCCce------------eeeecCCcccCCCCCCHHHHHHH
Q 022976 31 ADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPF------------IGEVWPGPCVFPDYTQSKVRSWW 98 (289)
Q Consensus 31 ~~L~~~g~k~~~~v~P~i~~~~~~~~y~~~~~~~~~v~~~~g~~~------------~~~~w~g~~~~~Dftnp~a~~ww 98 (289)
+..+++|++++.=+.-+|..++. ++. ....+|..+.+|+|. .|+.|.-..--++-...+..+||
T Consensus 205 ~yA~~~Gi~L~gDLpigV~~dsa-DvW---a~~~lF~l~~~~~p~~vaGaPPD~Fs~~GQ~WG~P~y~w~~l~~~gy~ww 280 (497)
T PRK14508 205 AYANDKGIEIIGDLPIYVAYDSA-DVW---ANPELFKLDEDGKPTVVAGVPPDYFSETGQLWGNPVYNWDALRKDGYRWW 280 (497)
T ss_pred HHHHHCCCEEEEeeecccCCCCH-HHH---cChhhhcCCCCCCcceeeeCCCCCCCcccCcCCCCCcCHHHHHhcCcHHH
Confidence 45677899776555555655431 111 233445544443321 23444322211111112336899
Q ss_pred HHHHHHHH
Q 022976 99 GSLVKDFI 106 (289)
Q Consensus 99 ~~~~~~~~ 106 (289)
.++++...
T Consensus 281 ~~rlr~~~ 288 (497)
T PRK14508 281 IERLRRSF 288 (497)
T ss_pred HHHHHHHH
Confidence 99997654
Done!