Query 022977
Match_columns 289
No_of_seqs 240 out of 1482
Neff 7.5
Searched_HMMs 13730
Date Mon Mar 25 14:18:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022977.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022977hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xmec1 f.23.9.1 (C:2-34) Bact 20.6 43 0.0031 17.6 2.7 19 5-23 2-20 (33)
2 d1vcpa_ b.47.1.3 (A:) Viral ca 11.5 43 0.0031 24.1 1.5 12 251-262 107-118 (149)
3 d1wyka_ b.47.1.3 (A:) Viral ca 11.4 44 0.0032 24.1 1.5 12 251-262 109-120 (152)
4 d1ep5a_ b.47.1.3 (A:) Viral ca 11.2 45 0.0033 24.2 1.5 12 251-262 113-124 (156)
5 d2axtj1 f.23.32.1 (J:7-40) Pho 10.6 1E+02 0.0074 16.5 2.5 17 260-276 6-23 (34)
6 d1r3jc_ f.14.1.1 (C:) Potassiu 6.0 1.4E+02 0.01 19.5 2.3 6 254-259 67-72 (103)
7 d2iuba2 f.17.3.1 (A:286-349) M 4.8 1.2E+02 0.0088 18.2 1.1 21 263-283 44-64 (64)
8 d1xrda1 f.3.1.1 (A:1-52) Light 4.8 2.7E+02 0.02 16.3 2.6 17 8-24 14-30 (52)
9 d1ucra_ a.4.5.45 (A:) Dissimil 4.6 2.8E+02 0.02 17.4 2.8 29 158-188 37-65 (74)
10 d1pw4a_ f.38.1.1 (A:) Glycerol 4.0 1.7E+02 0.013 23.1 1.9 27 260-286 414-440 (447)
No 1
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=20.63 E-value=43 Score=17.61 Aligned_cols=19 Identities=26% Similarity=0.426 Sum_probs=11.2
Q ss_pred CchhHHHHHHHHHHHHHHh
Q 022977 5 QTPSLILLLLLLLTTLSIL 23 (289)
Q Consensus 5 ~~~~~~~~~~~~l~~~~~~ 23 (289)
.+|.-+++++++|.+.++.
T Consensus 2 ekp~gal~vi~il~l~ilv 20 (33)
T d1xmec1 2 EKPKGALAVILVLTLTILV 20 (33)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHH
Confidence 3576666666665555443
No 2
>d1vcpa_ b.47.1.3 (A:) Viral capsid protein {Semliki forest virus [TaxId: 11033]}
Probab=11.48 E-value=43 Score=24.13 Aligned_cols=12 Identities=25% Similarity=0.634 Sum_probs=9.7
Q ss_pred CCcceEEEEehH
Q 022977 251 EEIEKTLAILIG 262 (289)
Q Consensus 251 ~~~~~~~~Ivv~ 262 (289)
++++|+++||++
T Consensus 107 DN~GkVVaIVLG 118 (149)
T d1vcpa_ 107 DNKGRVVAIVLG 118 (149)
T ss_dssp CTTSCEEEEEEE
T ss_pred cCCCCEEEEEec
Confidence 567889999975
No 3
>d1wyka_ b.47.1.3 (A:) Viral capsid protein {Sindbis virus [TaxId: 11034]}
Probab=11.36 E-value=44 Score=24.08 Aligned_cols=12 Identities=25% Similarity=0.642 Sum_probs=9.6
Q ss_pred CCcceEEEEehH
Q 022977 251 EEIEKTLAILIG 262 (289)
Q Consensus 251 ~~~~~~~~Ivv~ 262 (289)
++++++++||++
T Consensus 109 DN~GrVVaIVLG 120 (152)
T d1wyka_ 109 DNSGRVVAIVLG 120 (152)
T ss_dssp CTTSCEEEEEEE
T ss_pred cCCCcEEEEEec
Confidence 567889999975
No 4
>d1ep5a_ b.47.1.3 (A:) Viral capsid protein {Venezuelan equine encephalitis virus [TaxId: 11036]}
Probab=11.22 E-value=45 Score=24.19 Aligned_cols=12 Identities=25% Similarity=0.639 Sum_probs=9.6
Q ss_pred CCcceEEEEehH
Q 022977 251 EEIEKTLAILIG 262 (289)
Q Consensus 251 ~~~~~~~~Ivv~ 262 (289)
++++++++||++
T Consensus 113 DN~GkVVaIVLG 124 (156)
T d1ep5a_ 113 DNQGRVVAIVLG 124 (156)
T ss_dssp CTTSCEEEEEEE
T ss_pred cCCCcEEEEEec
Confidence 567889999975
No 5
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.65 E-value=1e+02 Score=16.47 Aligned_cols=17 Identities=24% Similarity=0.495 Sum_probs=9.3
Q ss_pred ehHHHHHHHHHH-HHHHH
Q 022977 260 LIGMIAGIALLV-IFLSS 276 (289)
Q Consensus 260 vv~~~~~~~~~~-~~~~~ 276 (289)
+|++++++.++. +.++|
T Consensus 6 lv~tv~G~~vi~~vG~Ff 23 (34)
T d2axtj1 6 IVATVAGMGVIVIVGLFF 23 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred EeeehhhhhhHhheeeee
Confidence 566777665444 44444
No 6
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=6.01 E-value=1.4e+02 Score=19.53 Aligned_cols=6 Identities=17% Similarity=0.484 Sum_probs=2.4
Q ss_pred ceEEEE
Q 022977 254 EKTLAI 259 (289)
Q Consensus 254 ~~~~~I 259 (289)
+|++++
T Consensus 67 gr~~~~ 72 (103)
T d1r3jc_ 67 GRCVAV 72 (103)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
No 7
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=4.83 E-value=1.2e+02 Score=18.21 Aligned_cols=21 Identities=0% Similarity=-0.010 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 022977 263 MIAGIALLVIFLSSIRRLCDG 283 (289)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~ 283 (289)
++.++.+++....+++-++||
T Consensus 44 ~~~~~~~~~~~~~~~~f~rkk 64 (64)
T d2iuba2 44 VVLAVMGVIAVIMVVYFKKKK 64 (64)
T ss_dssp HHHHHHHHHHHHHHTTTTSCC
T ss_pred HHHHHHHHHHHHHHHHHhccC
No 8
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=4.77 E-value=2.7e+02 Score=16.29 Aligned_cols=17 Identities=24% Similarity=0.151 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhh
Q 022977 8 SLILLLLLLLTTLSILT 24 (289)
Q Consensus 8 ~~~~~~~~~l~~~~~~~ 24 (289)
+|+++.+++++.+++.+
T Consensus 14 lva~~~fL~~LAl~IHf 30 (52)
T d1xrda1 14 LVGLATFLFVLALLIHF 30 (52)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
No 9
>d1ucra_ a.4.5.45 (A:) Dissimilatory sulfite reductase DsvD {Desulfovibrio vulgaris [TaxId: 881]}
Probab=4.64 E-value=2.8e+02 Score=17.44 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhcCCCCCCeeecCCCcEEEE
Q 022977 158 TRRDAVLGYLGSSDGSYKPYRVGGSGDVTGV 188 (289)
Q Consensus 158 ~~~~~ll~~l~~~~~~~~~f~~~~~~~vYgl 188 (289)
+.+..++++|+.... -.|-.++..++|||
T Consensus 37 R~vKK~~~~lV~e~~--L~ywSSGSTTMYgl 65 (74)
T d1ucra_ 37 REVKKILTALVNDEV--LEYWSSGSTTMYGL 65 (74)
T ss_dssp HHHHHHHHHHHHTTS--EEEEEETTEEEEEE
T ss_pred HHHHHHHHHHhccce--EEEEcCCCcEEecc
No 10
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=4.00 E-value=1.7e+02 Score=23.09 Aligned_cols=27 Identities=4% Similarity=0.087 Sum_probs=0.0
Q ss_pred ehHHHHHHHHHHHHHHHHHHHhhcCCC
Q 022977 260 LIGMIAGIALLVIFLSSIRRLCDGKGK 286 (289)
Q Consensus 260 vv~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (289)
++-++..++.+++.+.+.++.+||+|+
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~r~~~ 440 (447)
T d1pw4a_ 414 MVMIGGSILAVILLIVVMIGEKRRHEQ 440 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHH
Done!