BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022978
(289 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P82715|PPD5_ARATH PsbP domain-containing protein 5, chloroplastic OS=Arabidopsis
thaliana GN=PPD5 PE=1 SV=3
Length = 297
Score = 374 bits (961), Expect = e-103, Method: Compositional matrix adjust.
Identities = 187/299 (62%), Positives = 227/299 (75%), Gaps = 12/299 (4%)
Query: 1 MVLLSPSLSLPRLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQ-QNGFCRRDLVL 59
M LL PSL P R R S + + + I S S++ I + G RRDLVL
Sbjct: 1 MALLCPSLPSPNSRLFRC-RSSNISSKYHGASKELMIARSGVSTRSISSEKGLSRRDLVL 59
Query: 60 FGLSSSLSLGFPTPGSV---------AGEDVKMASFVDEINAYTYLYPMELPSKKFLFKW 110
GLSS LS+ P V +GE++KM + VD+INAY+Y YP++ PS+K +FKW
Sbjct: 60 IGLSSPLSMFLPLSSPVTHAEEDVKMSGEELKMGTMVDDINAYSYAYPLDYPSEKLVFKW 119
Query: 111 VESRKPERYSSAAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKD 170
VESRKPERYSSAAPLSP+ARLRIVSERVD+ DNL+IS++IGPPN + L SK+K TW+AK+
Sbjct: 120 VESRKPERYSSAAPLSPDARLRIVSERVDLTDNLVISISIGPPNSR-LTSKEKKTWSAKE 178
Query: 171 VADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYR 230
VADSVLSDKSALRVTSSQR+ ESSVLDAH S +DGEPYW+YEYL+RKSPT + + LYR
Sbjct: 179 VADSVLSDKSALRVTSSQRLEESSVLDAHASDIDGEPYWYYEYLVRKSPTKIAEASKLYR 238
Query: 231 HYVASTAEREGYLYSISASTLGKQWDEMGPFLEKSVASFHLLPPTDDYVPPYKDPWRFW 289
HY++STAER+GYLY+I+ASTLGKQWD+MGP LE++V SF LLPPTD YVPPYKDPWRFW
Sbjct: 239 HYISSTAERDGYLYTINASTLGKQWDKMGPVLERAVGSFRLLPPTDSYVPPYKDPWRFW 297
>sp|P82538|PPL1_ARATH PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPL1
PE=1 SV=1
Length = 230
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 95/225 (42%), Gaps = 43/225 (19%)
Query: 49 QNGFCRRDLVLFGLSSS-LSLGFPTPGSVAGEDVK-MASFVDEINAYTYLYPMELPSKKF 106
Q+ RR +V FG+ + +SL P S A E K + D +AY +LYP
Sbjct: 45 QDKCQRRLIVTFGVVAPWISLLSRAPLSFAAESKKGFLAVSDNKDAYAFLYP-------- 96
Query: 107 LFKWVESRKPERYSSAAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTW 166
F W E + + ++ + ++ +++ +SV + P + Q +K
Sbjct: 97 -FGWQE------------VVIEGQDKVYKDVIEPLES--VSVNLVPTSKQTIKEFGPPKQ 141
Query: 167 NAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEP 226
A+ + VL+ + +++++DA VDG+ Y+ +E+ + Q
Sbjct: 142 IAETLIKKVLAPPNQ----------KTTLIDASEHDVDGKTYYQFEFTV--------QAR 183
Query: 227 NLYRHYVASTAEREGYLYSISASTLGKQWDEMGPFLEKSVASFHL 271
N RH + + G Y+++ ++W++M L V SF +
Sbjct: 184 NYTRHALGTITVFNGNFYTLTTGANERRWEKMKDRLHTVVDSFKI 228
>sp|P18212|PSBP2_TOBAC Oxygen-evolving enhancer protein 2-2, chloroplastic OS=Nicotiana
tabacum GN=PSBP2 PE=1 SV=2
Length = 265
Score = 39.3 bits (90), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 66/159 (41%), Gaps = 30/159 (18%)
Query: 127 PNARLRIVSERVDIIDNLIISVT---------IGPPNVQFLKSKD----KSTWNAKDVAD 173
P LR + D N+I+++T G P QFL D + ++ K ++
Sbjct: 122 PGQVLRF-EDNFDATSNVIVAITPTDKKSITDFGSPE-QFLSQVDYLLGRQAYSGKTDSE 179
Query: 174 SVLSDKSALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYV 233
S +A ++VL+ +++V G+PY++ L R + N G +H +
Sbjct: 180 GGFE---------SDAVAIANVLETSSAEVGGKPYYYLSVLTRTADGNEGG-----KHQL 225
Query: 234 ASTAEREGYLYSISASTLGKQW-DEMGPFLEKSVASFHL 271
+ +G LY A K+W F+E + SF L
Sbjct: 226 ITATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSL 264
>sp|Q9SLQ8|PSBP_CUCSA Oxygen-evolving enhancer protein 2, chloroplastic OS=Cucumis
sativus GN=PSBP PE=2 SV=1
Length = 263
Score = 36.6 bits (83), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 104/252 (41%), Gaps = 41/252 (16%)
Query: 37 IVCSCASSKPIQQ--NGFCRRDLVLFGLSSSLSLGFP-TPGSVA-GEDVKMASFVDEINA 92
+VC +P Q+ G R L L L + +LG +P A GE + F +
Sbjct: 35 LVCRAQKQQPAQEEEGGVVSRRLALTVLIGAAALGSKVSPADAAYGEAANV--FGKPKSN 92
Query: 93 YTYL------YPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIVSERVDIIDNLII 146
YL + + +PSK W S++ E P LR + D NL
Sbjct: 93 TDYLPYSGDGFKLSIPSK-----WNPSKEREF--------PGQVLRY-EDNFDSNSNL-- 136
Query: 147 SVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSALRVTSSQ------RMAESSVLDAHT 200
SV I P + + +K V D +L ++ T+S+ +A +++L+A
Sbjct: 137 SVIINPTDKKSIKDFGSPEEFLSKV-DYLLGKQAYFGKTASEGGFDPDAVATANILEATA 195
Query: 201 SKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSISASTLGKQWDEMG- 259
S V+G+ Y+F L R + + G +H + + +G LY A K+W +
Sbjct: 196 SNVNGKDYYFVSVLTRTADGDEGG-----KHQLITATVNDGKLYICKAQAGDKRWFKGAR 250
Query: 260 PFLEKSVASFHL 271
F+E + +SF +
Sbjct: 251 KFVEGAASSFSV 262
>sp|Q96334|PSBP_BRAJU Oxygen-evolving enhancer protein 2, chloroplastic (Fragment)
OS=Brassica juncea GN=PSBP PE=2 SV=1
Length = 217
Score = 35.4 bits (80), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 190 MAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSISAS 249
+A +++L+ + V G+PY++ L R + + G +H + + G LY A
Sbjct: 139 VATANILETNIQDVGGKPYYYLSVLTRTADEDEGG-----KHQLITATVNGGKLYICKAQ 193
Query: 250 TLGKQW-DEMGPFLEKSVASFHL 271
K+W F+EK+ SF +
Sbjct: 194 AGDKRWFKGANKFVEKAATSFSV 216
>sp|P12302|PSBP_SPIOL Oxygen-evolving enhancer protein 2, chloroplastic OS=Spinacia
oleracea GN=PSBP PE=1 SV=1
Length = 267
Score = 35.4 bits (80), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 190 MAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSISAS 249
+A ++VL++ T VDG+ Y+ L R + + G +H V + ++G LY A
Sbjct: 189 VASANVLESSTPVVDGKQYYSITVLTRTADGDEGG-----KHQVIAATVKDGKLYICKAQ 243
Query: 250 TLGKQW-DEMGPFLEKSVASFHL 271
K+W F+E + +SF +
Sbjct: 244 AGDKRWFKGAKKFVESATSSFSV 266
>sp|P11594|PSBP_SINAL Oxygen-evolving enhancer protein 2, chloroplastic OS=Sinapis alba
GN=PSBP PE=2 SV=2
Length = 260
Score = 35.0 bits (79), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 190 MAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSISAS 249
+A +++L+ + V G+PY++ L R + + G +H + + G LY A
Sbjct: 182 VATANILETNIQDVGGKPYYYLSVLTRTADGDEGG-----KHQLITATVNGGKLYICKAQ 236
Query: 250 TLGKQW-DEMGPFLEKSVASFHL 271
K+W F+EK+ SF +
Sbjct: 237 AGDKRWFKGANKFVEKAATSFSV 259
>sp|P84853|RIPL1_PHYDI Ribosome-inactivating protein PD-L1/PD-L2 OS=Phytolacca dioica PE=1
SV=2
Length = 261
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 8/142 (5%)
Query: 31 RLNNKAIVCSCASS---KPIQQNGF--CRRDLVLFGLSSSLSLGFPTPGSVAGEDVKMAS 85
R N + +CS +SS KPI N S + LG S G+ +S
Sbjct: 97 RTNVENTLCSSSSSRDAKPINYNSLYSTLEKKAEVNSRSQVQLGIQILSSDIGKISGQSS 156
Query: 86 FVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIVSERVDIIDNLI 145
F D+ A L +++ S+ FK++E++ ++ SPN ++ + E I I
Sbjct: 157 FTDKTEAKFLLVAIQMVSEAARFKYIENQVKTNFNR--DFSPNDKILDLEENWGKISTAI 214
Query: 146 ISVTIGP-PNVQFLKSKDKSTW 166
T G P LK+ D + W
Sbjct: 215 HDATNGALPKPLELKNADGTKW 236
>sp|P85189|PSBP_HELAN Oxygen-evolving enhancer protein 2, chloroplastic OS=Helianthus
annuus GN=PSBP PE=1 SV=1
Length = 263
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 190 MAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSISAS 249
+A +++L+ T VDG+ Y+F L R + + G +H + S +G LY A
Sbjct: 185 VATANILEVATPTVDGKQYYFLSVLTRTADGDEGG-----KHQLISATVSDGKLYICKAQ 239
Query: 250 TLGKQW 255
K+W
Sbjct: 240 AGDKRW 245
>sp|Q42029|PSBP1_ARATH Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Arabidopsis
thaliana GN=PSBP1 PE=1 SV=2
Length = 263
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 190 MAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSISAS 249
+A +++L++ + +V G+PY++ L R + + G +H + + G LY A
Sbjct: 185 VATANILESSSQEVGGKPYYYLSVLTRTADGDEGG-----KHQLITATVNGGKLYICKAQ 239
Query: 250 TLGKQWDEMG-PFLEKSVASFHL 271
K+W + F+E + SF +
Sbjct: 240 AGDKRWFKGARKFVESAATSFSV 262
>sp|O49080|PSBP_FRIAG Oxygen-evolving enhancer protein 2, chloroplastic OS=Fritillaria
agrestis GN=PSBP PE=2 SV=1
Length = 264
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 190 MAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSISAS 249
+A +++L+ T V G+ Y+ L R + + G +H+V S +G LY A
Sbjct: 186 VATANILEVSTPVVGGKQYYNISVLTRTADGDEGG-----KHHVISATVTDGKLYICKAQ 240
Query: 250 TLGKQW-DEMGPFLEKSVASFHL 271
K+W F+E + SF++
Sbjct: 241 AGDKRWFKGAKKFVESTTTSFNV 263
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,712,578
Number of Sequences: 539616
Number of extensions: 4209002
Number of successful extensions: 10044
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 10039
Number of HSP's gapped (non-prelim): 15
length of query: 289
length of database: 191,569,459
effective HSP length: 116
effective length of query: 173
effective length of database: 128,974,003
effective search space: 22312502519
effective search space used: 22312502519
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)