BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022979
(289 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QB5|A Chain A, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate
56-Kinase (Itpk1) In Complex With Adp And Mn2+
pdb|2QB5|B Chain B, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate
56-Kinase (Itpk1) In Complex With Adp And Mn2+
Length = 347
Score = 100 bits (250), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 103/210 (49%), Gaps = 12/210 (5%)
Query: 31 VGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLS-------- 82
VGY L+ KK K L R +G+ V ++ +RP+ +QGP DV++HKL+
Sbjct: 22 VGYWLSEKKIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQ 81
Query: 83 ----GMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPR 138
+E ++Y HPE +LDP AI+ L +R + + + + ++ P
Sbjct: 82 NDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPP 141
Query: 139 QMVITKDSLSIPDQVFEAGXXXXXXXXXXXXDGSAKSHELFLAYDRFSLSELEPPMLLQE 198
M +T ++ E SHE+ + +++ L+ ++PP ++Q
Sbjct: 142 FMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGTNSHEMAIVFNQEGLNAIQPPCVVQN 201
Query: 199 FVNHGGILFKIYIIGETIKVVRRFSLPNVS 228
F+NH +L+K++++GE+ VV+R SL N S
Sbjct: 202 FINHNAVLYKVFVVGESYTVVQRPSLKNFS 231
>pdb|2Q7D|A Chain A, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate
56-Kinase (Itpk1) In Complex With Amppnp And Mn2+
pdb|2Q7D|B Chain B, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate
56-Kinase (Itpk1) In Complex With Amppnp And Mn2+
Length = 346
Score = 100 bits (250), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 103/210 (49%), Gaps = 12/210 (5%)
Query: 31 VGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLS-------- 82
VGY L+ KK K L R +G+ V ++ +RP+ +QGP DV++HKL+
Sbjct: 21 VGYWLSEKKIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQ 80
Query: 83 ----GMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPR 138
+E ++Y HPE +LDP AI+ L +R + + + + ++ P
Sbjct: 81 NDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPP 140
Query: 139 QMVITKDSLSIPDQVFEAGXXXXXXXXXXXXDGSAKSHELFLAYDRFSLSELEPPMLLQE 198
M +T ++ E SHE+ + +++ L+ ++PP ++Q
Sbjct: 141 FMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGTNSHEMAIVFNQEGLNAIQPPCVVQN 200
Query: 199 FVNHGGILFKIYIIGETIKVVRRFSLPNVS 228
F+NH +L+K++++GE+ VV+R SL N S
Sbjct: 201 FINHNAVLYKVFVVGESYTVVQRPSLKNFS 230
>pdb|2ODT|X Chain X, Structure Of Human Inositol 1,3,4-Trisphosphate 56-Kinase
Length = 328
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 100/210 (47%), Gaps = 12/210 (5%)
Query: 31 VGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLS-------- 82
VGY L+ KK K L R +G V ++ +RP+ +QGP DV++HKL+
Sbjct: 11 VGYWLSEKKIKKLNFQAFAELCRKRGXEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQ 70
Query: 83 ----GMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPR 138
+E ++Y HPE +LDP AI+ L +R + + + + ++ P
Sbjct: 71 NDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYXEDDRICSPP 130
Query: 139 QMVITKDSLSIPDQVFEAGXXXXXXXXXXXXDGSAKSHELFLAYDRFSLSELEPPMLLQE 198
+T ++ E SHE + +++ L+ ++PP ++Q
Sbjct: 131 FXELTSLCGDDTXRLLEKNGLTFPFICKTRVAHGTNSHEXAIVFNQEGLNAIQPPCVVQN 190
Query: 199 FVNHGGILFKIYIIGETIKVVRRFSLPNVS 228
F+NH +L+K++++GE+ VV+R SL N S
Sbjct: 191 FINHNAVLYKVFVVGESYTVVQRPSLKNFS 220
>pdb|1Z2N|X Chain X, Inositol 1,3,4-trisphosphate 5/6-kinase Complexed Mg2+/adp
pdb|1Z2O|X Chain X, Inositol 1,3,4-Trisphosphate 56-Kinase In Complex With
Mg2+ADPINS(1,3,4,6)P4
pdb|1Z2P|X Chain X, Inositol 1,3,4-Trisphosphate 56-Kinase In Complex With
Mg2+AMP- PcpINS(1,3,4)P3
Length = 324
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 35/59 (59%)
Query: 171 GSAKSHELFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSK 229
G+ +H++ + ++ + ++ P L Q ++NH + K++ IG T+K R SLPNV +
Sbjct: 147 GTFNAHQMKIVLEQEGIDDIHFPCLCQHYINHNNKIVKVFCIGNTLKWQTRTSLPNVHR 205
>pdb|3N6X|A Chain A, Crystal Structure Of A Putative Glutathionylspermidine
Synth (Mfla_0391) From Methylobacillus Flagellatus Kt
At 2.35 A R
Length = 474
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 35 LTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYR 94
L SK++++ E+L R GI+F ++ PFDVV LS EW ++ +
Sbjct: 39 LESKRQEA------ELLFRRVGITFNVYGEDAGAERLIPFDVVPRILSASEWARLSDGAI 92
Query: 95 QK 96
Q+
Sbjct: 93 QR 94
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 119 LQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEA---GXXXXXXXXXXXXDGSAKS 175
L DV+ +NLS K RVP T+ +S P+ VFE G + S++S
Sbjct: 152 LLDVSKVNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRS 211
Query: 176 HELFL 180
H +FL
Sbjct: 212 HSVFL 216
>pdb|3LPX|A Chain A, Crystal Structure Of Gyra
pdb|3LPX|B Chain B, Crystal Structure Of Gyra
Length = 500
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 8/55 (14%)
Query: 40 KKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYR 94
+ +L+P+ I G+ ++ +Q + + D+ L+KLSGME KI+ +Y+
Sbjct: 403 RPEWLEPEYGI---RDGLYYLTAEQAKAI-----VDLQLYKLSGMEHDKILSEYK 449
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,676,806
Number of Sequences: 62578
Number of extensions: 242149
Number of successful extensions: 571
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 559
Number of HSP's gapped (non-prelim): 13
length of query: 289
length of database: 14,973,337
effective HSP length: 98
effective length of query: 191
effective length of database: 8,840,693
effective search space: 1688572363
effective search space used: 1688572363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)