Query 022979
Match_columns 289
No_of_seqs 131 out of 160
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 07:33:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022979.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022979hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05770 Ins134_P3_kin: Inosit 100.0 5E-91 1.1E-95 655.4 18.7 261 26-286 5-267 (307)
2 PLN02941 inositol-tetrakisphos 100.0 2.4E-70 5.2E-75 520.0 26.1 266 21-286 14-282 (328)
3 TIGR00768 rimK_fam alpha-L-glu 99.2 6.4E-10 1.4E-14 100.8 17.7 206 45-287 13-237 (277)
4 TIGR02144 LysX_arch Lysine bio 99.2 1E-09 2.2E-14 100.5 17.5 202 47-286 14-234 (280)
5 PRK10446 ribosomal protein S6 98.8 3.7E-07 8.1E-12 85.4 18.7 202 47-284 17-244 (300)
6 PF08443 RimK: RimK-like ATP-g 98.7 1.7E-07 3.6E-12 82.4 11.0 141 114-287 3-151 (190)
7 PRK01372 ddl D-alanine--D-alan 98.5 2.9E-06 6.3E-11 78.8 13.7 155 47-217 27-193 (304)
8 COG0189 RimK Glutathione synth 98.5 3.9E-06 8.5E-11 80.3 14.3 184 72-286 77-270 (318)
9 TIGR01205 D_ala_D_alaTIGR D-al 98.4 1.9E-06 4.1E-11 80.4 10.5 154 48-214 23-203 (315)
10 PRK12767 carbamoyl phosphate s 98.3 2.1E-05 4.5E-10 73.6 13.9 106 94-212 91-199 (326)
11 TIGR01380 glut_syn glutathione 98.1 0.00011 2.5E-09 69.6 15.6 159 48-225 23-228 (312)
12 PRK02471 bifunctional glutamat 98.1 9.3E-05 2E-09 78.3 16.2 152 47-230 436-600 (752)
13 PRK05246 glutathione synthetas 98.1 0.00014 3.1E-09 68.9 16.0 159 47-224 23-228 (316)
14 PRK12458 glutathione synthetas 98.1 5.8E-05 1.3E-09 72.6 13.2 130 73-217 79-226 (338)
15 PRK06019 phosphoribosylaminoim 98.0 8.5E-05 1.8E-09 71.8 12.5 151 48-213 17-191 (372)
16 PRK07206 hypothetical protein; 98.0 0.00013 2.8E-09 70.8 13.7 101 99-212 93-208 (416)
17 PRK14016 cyanophycin synthetas 98.0 0.0002 4.3E-09 75.5 15.5 149 47-227 164-320 (727)
18 PRK14571 D-alanyl-alanine synt 97.9 9.8E-05 2.1E-09 68.9 10.9 146 48-214 24-182 (299)
19 PRK14569 D-alanyl-alanine synt 97.9 0.00078 1.7E-08 63.2 16.2 150 48-216 27-188 (296)
20 TIGR01369 CPSaseII_lrg carbamo 97.9 0.00029 6.2E-09 77.0 15.0 107 99-218 653-770 (1050)
21 PRK09288 purT phosphoribosylgl 97.8 0.00029 6.2E-09 67.9 12.7 150 47-213 26-210 (395)
22 PRK02186 argininosuccinate lya 97.8 0.00027 5.8E-09 75.9 13.0 94 104-212 97-198 (887)
23 TIGR01161 purK phosphoribosyla 97.7 0.0003 6.6E-09 67.1 11.4 143 47-203 13-180 (352)
24 TIGR01142 purT phosphoribosylg 97.7 0.00042 9.1E-09 66.4 12.4 99 100-212 86-196 (380)
25 TIGR03103 trio_acet_GNAT GNAT- 97.7 0.0012 2.6E-08 67.5 16.3 152 43-226 240-401 (547)
26 PRK06849 hypothetical protein; 97.7 0.00064 1.4E-08 65.8 12.9 91 101-203 103-197 (389)
27 PRK05294 carB carbamoyl phosph 97.7 0.0013 2.7E-08 72.2 16.1 100 104-216 659-768 (1066)
28 PRK01966 ddl D-alanyl-alanine 97.6 0.0006 1.3E-08 65.0 11.5 128 73-214 81-219 (333)
29 PRK12815 carB carbamoyl phosph 97.6 0.0011 2.3E-08 72.8 14.5 101 99-214 654-762 (1068)
30 PF13535 ATP-grasp_4: ATP-gras 97.6 0.0001 2.2E-09 62.4 4.7 92 112-216 2-104 (184)
31 TIGR02068 cya_phycin_syn cyano 97.6 0.00097 2.1E-08 71.6 13.1 109 104-227 203-319 (864)
32 PRK13790 phosphoribosylamine-- 97.5 0.0011 2.5E-08 64.4 11.6 133 46-212 17-159 (379)
33 PRK08462 biotin carboxylase; V 97.4 0.00068 1.5E-08 66.8 9.4 142 41-214 60-218 (445)
34 PRK14572 D-alanyl-alanine synt 97.4 0.0022 4.7E-08 61.6 11.6 127 73-214 88-228 (347)
35 PF07478 Dala_Dala_lig_C: D-al 97.3 0.00014 2.9E-09 65.2 2.8 77 133-214 6-90 (203)
36 PLN02948 phosphoribosylaminoim 97.1 0.006 1.3E-07 62.9 12.9 157 27-202 21-204 (577)
37 PRK00885 phosphoribosylamine-- 97.1 0.0047 1E-07 60.5 11.4 109 90-214 78-200 (420)
38 PRK14568 vanB D-alanine--D-lac 97.1 0.0022 4.7E-08 61.4 8.6 125 73-215 90-223 (343)
39 PRK05294 carB carbamoyl phosph 97.1 0.0055 1.2E-07 67.3 12.7 91 99-202 112-212 (1066)
40 PRK05586 biotin carboxylase; V 97.1 0.001 2.2E-08 65.9 6.3 112 90-215 91-217 (447)
41 TIGR01369 CPSaseII_lrg carbamo 97.1 0.0091 2E-07 65.5 14.2 152 48-214 32-222 (1050)
42 PRK12815 carB carbamoyl phosph 96.8 0.012 2.5E-07 64.8 12.6 102 99-214 112-223 (1068)
43 PLN02735 carbamoyl-phosphate s 96.8 0.007 1.5E-07 66.8 10.8 115 86-214 665-797 (1102)
44 TIGR00877 purD phosphoribosyla 96.8 0.011 2.5E-07 57.6 11.1 108 90-213 80-201 (423)
45 PRK14570 D-alanyl-alanine synt 96.7 0.0052 1.1E-07 59.8 7.7 127 73-215 87-229 (364)
46 PLN02735 carbamoyl-phosphate s 96.7 0.017 3.7E-07 63.8 12.2 152 48-214 49-240 (1102)
47 KOG1057 Arp2/3 complex-interac 96.6 0.014 3E-07 61.6 10.2 187 26-224 38-262 (1018)
48 PRK06524 biotin carboxylase-li 96.5 0.0079 1.7E-07 61.0 7.8 114 90-214 118-239 (493)
49 PRK06111 acetyl-CoA carboxylas 96.4 0.0084 1.8E-07 58.9 7.2 103 99-214 99-216 (450)
50 PRK08591 acetyl-CoA carboxylas 96.4 0.0085 1.8E-07 59.1 6.9 99 102-214 103-216 (451)
51 TIGR01235 pyruv_carbox pyruvat 96.3 0.031 6.7E-07 62.0 11.5 104 99-215 99-217 (1143)
52 TIGR00514 accC acetyl-CoA carb 96.2 0.011 2.4E-07 58.5 6.8 102 99-214 99-216 (449)
53 TIGR01435 glu_cys_lig_rel glut 96.0 0.02 4.3E-07 60.8 7.8 88 133-228 487-585 (737)
54 PRK08654 pyruvate carboxylase 96.0 0.013 2.9E-07 59.2 6.3 103 99-215 99-217 (499)
55 PRK07178 pyruvate carboxylase 96.0 0.042 9.2E-07 55.0 9.7 142 41-214 57-215 (472)
56 PRK08463 acetyl-CoA carboxylas 95.9 0.023 5E-07 57.0 7.5 103 99-214 98-216 (478)
57 PRK12833 acetyl-CoA carboxylas 95.9 0.024 5.1E-07 56.7 7.4 100 102-215 106-220 (467)
58 PRK13789 phosphoribosylamine-- 95.8 0.082 1.8E-06 52.5 10.9 137 44-214 56-206 (426)
59 PLN02257 phosphoribosylamine-- 95.8 0.092 2E-06 52.3 11.1 125 46-202 52-190 (434)
60 PRK14573 bifunctional D-alanyl 95.6 0.12 2.5E-06 55.3 11.7 129 73-215 526-669 (809)
61 PRK06395 phosphoribosylamine-- 95.4 0.17 3.6E-06 50.4 11.3 141 46-218 55-208 (435)
62 TIGR02712 urea_carbox urea car 95.1 0.11 2.3E-06 58.1 9.7 138 45-214 62-214 (1201)
63 PRK12999 pyruvate carboxylase; 94.9 0.03 6.4E-07 62.2 4.6 102 99-214 103-220 (1146)
64 PRK05784 phosphoribosylamine-- 93.7 2.4 5.3E-05 43.0 15.2 133 47-214 60-217 (486)
65 COG0026 PurK Phosphoribosylami 93.5 0.84 1.8E-05 45.0 11.0 141 50-205 18-184 (375)
66 TIGR02291 rimK_rel_E_lig alpha 93.5 3.3 7.1E-05 40.0 14.9 166 111-287 34-251 (317)
67 PF15632 ATPgrasp_Ter: ATP-gra 93.4 0.36 7.8E-06 46.7 8.3 126 48-203 58-209 (329)
68 PF02655 ATP-grasp_3: ATP-gras 91.4 0.36 7.9E-06 41.2 5.0 80 113-214 2-82 (161)
69 PRK13278 purP 5-formaminoimida 90.0 0.73 1.6E-05 45.1 6.3 134 47-203 31-202 (358)
70 COG2232 Predicted ATP-dependen 88.9 3.7 8E-05 40.2 9.9 154 25-214 11-196 (389)
71 PF02955 GSH-S_ATP: Prokaryoti 88.7 0.34 7.3E-06 42.7 2.6 124 136-286 12-147 (173)
72 COG3919 Predicted ATP-grasp en 88.2 0.42 9.1E-06 46.2 3.1 87 107-205 107-204 (415)
73 PRK13277 5-formaminoimidazole- 88.1 0.86 1.9E-05 44.8 5.2 55 133-202 138-208 (366)
74 COG0439 AccC Biotin carboxylas 85.7 1.3 2.9E-05 44.6 5.2 120 89-222 90-228 (449)
75 COG0458 CarB Carbamoylphosphat 84.2 5 0.00011 40.0 8.3 98 100-212 102-208 (400)
76 PF02222 ATP-grasp: ATP-grasp 83.8 0.41 9E-06 42.0 0.6 68 133-205 5-77 (172)
77 COG1181 DdlA D-alanine-D-alani 80.9 34 0.00074 32.9 12.5 219 48-287 26-266 (317)
78 PF02786 CPSase_L_D2: Carbamoy 80.5 2.2 4.9E-05 38.5 4.1 54 157-214 36-102 (211)
79 COG1821 Predicted ATP-utilizin 79.3 17 0.00037 34.6 9.5 45 162-218 141-187 (307)
80 COG0027 PurT Formate-dependent 73.3 22 0.00047 34.9 8.7 141 48-203 27-201 (394)
81 TIGR01016 sucCoAbeta succinyl- 64.2 3.4 7.5E-05 40.3 1.3 79 133-215 16-116 (386)
82 PRK00696 sucC succinyl-CoA syn 55.9 9.8 0.00021 37.1 2.9 69 133-204 16-106 (388)
83 KOG2356 Transcriptional activa 43.1 22 0.00048 34.5 2.9 25 83-107 170-194 (366)
84 PF03133 TTL: Tubulin-tyrosine 42.9 12 0.00026 34.7 1.1 50 160-212 66-125 (292)
85 PF02065 Melibiase: Melibiase; 41.7 41 0.00088 33.5 4.7 67 34-102 161-230 (394)
86 PF14397 ATPgrasp_ST: Sugar-tr 33.7 1.4E+02 0.0031 28.0 6.9 97 104-203 16-128 (285)
87 PF13380 CoA_binding_2: CoA bi 33.3 1.4E+02 0.003 24.1 5.9 75 28-106 3-88 (116)
88 PF13407 Peripla_BP_4: Peripla 32.8 89 0.0019 27.3 5.1 63 31-108 1-66 (257)
89 PF13481 AAA_25: AAA domain; P 32.7 42 0.00091 28.5 2.9 28 85-112 127-156 (193)
90 cd01125 repA Hexameric Replica 32.5 84 0.0018 28.1 4.9 80 27-109 40-123 (239)
91 PF14972 Mito_morph_reg: Mitoc 31.9 68 0.0015 28.3 3.9 33 75-107 4-41 (165)
92 cd05565 PTS_IIB_lactose PTS_II 31.2 1.8E+02 0.0039 23.3 6.1 79 42-120 14-95 (99)
93 COG4213 XylF ABC-type xylose t 29.0 56 0.0012 31.9 3.2 69 23-107 20-91 (341)
94 PF06228 ChuX_HutX: Haem utili 26.7 55 0.0012 28.0 2.5 18 196-213 105-123 (141)
95 KOG0555 Asparaginyl-tRNA synth 26.7 48 0.001 33.5 2.4 39 181-219 256-294 (545)
96 PRK06067 flagellar accessory p 26.2 1.5E+02 0.0031 26.4 5.3 38 86-123 108-146 (234)
97 PF14305 ATPgrasp_TupA: TupA-l 25.6 5.2E+02 0.011 23.6 12.0 65 154-223 51-145 (239)
98 cd02065 B12-binding_like B12 b 25.1 2.3E+02 0.0049 22.1 5.8 41 47-105 18-58 (125)
99 KOG2158 Tubulin-tyrosine ligas 23.3 32 0.00068 35.3 0.5 49 160-212 227-282 (565)
100 cd01122 GP4d_helicase GP4d_hel 22.8 1.4E+02 0.0031 26.9 4.7 27 86-112 128-155 (271)
101 PF01135 PCMT: Protein-L-isoas 22.4 80 0.0017 28.5 2.8 26 56-81 124-149 (209)
102 TIGR02237 recomb_radB DNA repa 22.3 1.5E+02 0.0032 25.6 4.5 25 87-111 86-111 (209)
103 cd06353 PBP1_BmpA_Med_like Per 22.0 2.8E+02 0.006 25.3 6.4 61 31-106 2-66 (258)
104 TIGR00853 pts-lac PTS system, 21.5 1.4E+02 0.0031 23.4 3.8 62 43-107 18-85 (95)
105 PF04046 PSP: PSP; InterPro: 20.7 42 0.00091 23.8 0.5 13 271-283 4-16 (48)
106 PRK13942 protein-L-isoaspartat 20.6 1.4E+02 0.0031 26.4 4.0 23 56-78 128-150 (212)
107 PF12058 DUF3539: Protein of u 20.5 99 0.0022 24.6 2.6 19 198-216 4-24 (88)
No 1
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=100.00 E-value=5e-91 Score=655.44 Aligned_cols=261 Identities=51% Similarity=0.879 Sum_probs=220.8
Q ss_pred CccEEEEEEechhhhhhccchHHHHHHHhcCcEEEEccCCCCCCCCCCceEEEecccchHHHHHHHHHHHhCCCeEEeCC
Q 022979 26 PERLVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDP 105 (289)
Q Consensus 26 ~~~~~VGy~l~~kK~~~~~~~~l~~~~~~~gi~~v~iD~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~ViDP 105 (289)
+++++|||||++||+++|+|++|+.+|+++||+||+||+++||++||||||||||+||..|+++||+|+++||+++||||
T Consensus 5 ~~~~~VGy~l~~kK~~~~~~~~~~~~~~~~gi~~v~id~~~pl~~QgpfDvIlHKltd~~~~~~l~~y~~~hP~v~viDp 84 (307)
T PF05770_consen 5 RKRFRVGYALSPKKQKSFIQPSFIDLARSRGIDFVPIDLSKPLEEQGPFDVILHKLTDEDWVQQLEEYIKKHPEVVVIDP 84 (307)
T ss_dssp GTT-EEEEE--HHHHHHHCCCHHCCCCCCCTTEEEEEECCSSSGCC--SCEEEE--CHCHHHHHHHHHHHH-TTSEEET-
T ss_pred ccceEEEEEECHHHHHHhhHHHHHHHHHhcCCEEEEcCCCCCcccCCCcEEEEEeCCCHHHHHHHHHHHHHCCCeEEEcC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEeccC
Q 022979 106 PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRF 185 (289)
Q Consensus 106 ~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~ 185 (289)
+++|++|+||.+|++.|++++...+.+.|++|+|++++++.+++.+.++++||+||+||||++||||++||+|+||||++
T Consensus 85 ~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~ 164 (307)
T PF05770_consen 85 PDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVVINSDAESLPELLKEAGLKFPLICKPLVACGSADSHKMAIVFNEE 164 (307)
T ss_dssp HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEEESSSHCCHHHHHHCTTS-SSEEEEESB-SSTSCCCEEEEE-SGG
T ss_pred HHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEEEcCCHHHHHHHHHHCCCcccEEeeehhhcCCccceEEEEEECHH
Confidence 99999999999999999998777677899999999998778889999999999999999999999999999999999999
Q ss_pred CCCCCCCCeeEEEeeecceeEEEEEEEcceEEEEEecCCCCCchhhhhccceeeeeCCccCCCcCCCcCCCC--CCCCCC
Q 022979 186 SLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLD--PGIAEL 263 (289)
Q Consensus 186 gL~~L~~P~VlQeFINH~gvLfKVYVvGd~v~vv~R~SLpn~~~~~~~~~~~~~~f~~vS~~~~~~~~~~ld--~~~~e~ 263 (289)
||++|++|||+||||||||+|||||||||+++|++||||||++.++.....+.|+|+++|++++.++++.+| +...++
T Consensus 165 gL~~L~~P~VlQeFVNHggvLfKVyVvGd~v~~v~R~SLpn~~~~~~~~~~~~f~~~~vs~~~~~~~~~~~d~~~~~~~~ 244 (307)
T PF05770_consen 165 GLKDLKPPCVLQEFVNHGGVLFKVYVVGDKVFVVKRPSLPNVSSGKLDREEIFFDFHQVSKLESSSDLSDLDKDPSQVEM 244 (307)
T ss_dssp GGTT--SSEEEEE----TTEEEEEEEETTEEEEEEEE------SSS-TCGGCCCEGGGTCSTTTSSGGGSBSS-TTTTTS
T ss_pred HHhhcCCCEEEEEeecCCCEEEEEEEecCEEEEEECCCCCCCCcccccccccceeccccCCccccCchhhcccCcccccC
Confidence 999999999999999999999999999999999999999999998776677899999999999998887776 567789
Q ss_pred CCHHHHHHHHHHHHHHhCCeEee
Q 022979 264 PPRPLLERLARELRHRLVNILVF 286 (289)
Q Consensus 264 p~~~~l~~iA~~LR~~LgL~LFG 286 (289)
|+.++++++|++||++|||+|||
T Consensus 245 p~~~~v~~la~~LR~~lgL~LFg 267 (307)
T PF05770_consen 245 PPDELVEKLAKELRRALGLTLFG 267 (307)
T ss_dssp --HHHHHHHHHHHHHHHT-SEEE
T ss_pred CCHHHHHHHHHHHHHHhCcceee
Confidence 99999999999999999999999
No 2
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=100.00 E-value=2.4e-70 Score=520.03 Aligned_cols=266 Identities=68% Similarity=1.046 Sum_probs=247.4
Q ss_pred cCCCCCccEEEEEEechhhhhhccchHHHHHHHhcCcEEEEccCCCCCCCCCCceEEEecccchHHHHHHHHHHHhCCCe
Q 022979 21 SGVLQPERLVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEV 100 (289)
Q Consensus 21 ~~~~~~~~~~VGy~l~~kK~~~~~~~~l~~~~~~~gi~~v~iD~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~~hP~v 100 (289)
+.+..+++++|||||++||+++|+|++|+.+|+++||+|++||+++||++||||||||||+++..|++.+++|..+||++
T Consensus 14 ~~~~~~~~~~vGy~l~~kk~~~~~~~~l~~~~~~~Gi~~v~Id~~~pl~~qgpfDvilhK~~~~~~~~~~~~~~~e~pgv 93 (328)
T PLN02941 14 SSSSQQKRFVVGYALTPKKVKSFLQPSLEALARSKGIDLVAIDPSRPLSEQGPFDVILHKLYGKEWRQQLEEYREKHPDV 93 (328)
T ss_pred cccccCCceEEEEEECHHHHHHHhhHHHHHHHHHCCCeEEEecCCCCccccCCcCEEEEecCCHHHHHHHHHHHHHCCCc
Confidence 33466789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEE
Q 022979 101 TILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL 180 (289)
Q Consensus 101 ~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Mai 180 (289)
+||||+++|+.++||..|++.|+++..+++.+.|++|+++++.+...++...++.++++||+||||++||||+.+|.|++
T Consensus 94 ~vidp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t~v~~~~~~al~~~~~~~~l~~P~V~KPl~g~Gss~gh~m~l 173 (328)
T PLN02941 94 TVLDPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQLVVYDDESSIPDAVALAGLKFPLVAKPLVADGSAKSHKMSL 173 (328)
T ss_pred EEECCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCEEEEcCHHHHHHHHHHHhcCCCCEEEeecccCCCccccceEE
Confidence 99999999999999999999999988877778899999999975544455567789999999999999999999999999
Q ss_pred EeccCCCCCCCCCeeEEEeeecceeEEEEEEEcceEEEEEecCCCCCchhhhhccceeeeeCCccCCCcCCCcCC---CC
Q 022979 181 AYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDAD---LD 257 (289)
Q Consensus 181 vf~~~gL~~L~~P~VlQeFINH~gvLfKVYVvGd~v~vv~R~SLpn~~~~~~~~~~~~~~f~~vS~~~~~~~~~~---ld 257 (289)
|++++||..|++||++||||||+|++||||||||++.++.|+|+||+..++.....|.++|+++|++++.++.+. +|
T Consensus 174 v~~~~~L~~l~~p~~lQEfVnh~g~d~RVfVvGd~v~~~~R~S~~n~~~~~~n~~~G~~~f~~vs~~~~~~~~~~~~~~~ 253 (328)
T PLN02941 174 AYDQEGLSKLEPPLVLQEFVNHGGVLFKVYVVGDYVKCVRRFSLPDVSEEELSSAEGVLPFPRVSNAAASADDADNGGLD 253 (328)
T ss_pred ecCHHHHHhcCCcEEEEEecCCCCEEEEEEEECCEEEEEEecCCcccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999876556678999999999998877665 56
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCeEee
Q 022979 258 PGIAELPPRPLLERLARELRHRLVNILVF 286 (289)
Q Consensus 258 ~~~~e~p~~~~l~~iA~~LR~~LgL~LFG 286 (289)
+...++|+.+.+++||.++|++||++|||
T Consensus 254 ~~~~~~p~~~~l~~La~~~r~alGl~l~G 282 (328)
T PLN02941 254 PEVAELPPRPFLEDLARELRRRLGLRLFN 282 (328)
T ss_pred cccccCCChHHHHHHHHHHHHHhCCceEE
Confidence 66678899999999999999999999999
No 3
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.23 E-value=6.4e-10 Score=100.85 Aligned_cols=206 Identities=17% Similarity=0.221 Sum_probs=135.0
Q ss_pred chHHHHHHHhcCcEEEEccCCCC---CCC----CCCceEEEecccchHHHHHHHHHHHhCCCeEEeCChhHHhhhccHHH
Q 022979 45 QPKLEILARNKGISFVAIDQNRP---LSD----QGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQS 117 (289)
Q Consensus 45 ~~~l~~~~~~~gi~~v~iD~~~p---l~~----Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~ViDP~~~i~~l~dR~~ 117 (289)
.+.+.+.++++|+.+..+|.+.. +.. ...+|+|+-...+......+.+..+.. .+.++.++++++...|+..
T Consensus 13 ~~~l~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~dK~~ 91 (277)
T TIGR00768 13 EKMLKEAAEELGIDYKVVTPPAIPLTFNEGPRELAELDVVIVRIVSMFRGLAVARYLESL-GVPVINSSDAILNAGDKFL 91 (277)
T ss_pred HHHHHHHHHHcCCceEEEEhHHcEEeccCCCccCCCCCEEEEechhHhhHHHHHHHHHHC-CCeeeCCHHHHHHHhhHHH
Confidence 33688889999999988887532 222 336899988773322222344444544 5778899999999999999
Q ss_pred HHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEeccCCCCC-------C
Q 022979 118 MLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------L 190 (289)
Q Consensus 118 ~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~-------L 190 (289)
+++.+++. .+.+|+...+. +.+++...+ ..+.||+|+||..++|+ ..+.++.+.+.+.. .
T Consensus 92 ~~~~l~~~-------gi~~P~t~~~~-~~~~~~~~~--~~~~~p~vvKP~~g~~g---~gv~~i~~~~~l~~~~~~~~~~ 158 (277)
T TIGR00768 92 TSQLLAKA-------GLPQPRTGLAG-SPEEALKLI--EEIGFPVVLKPVFGSWG---RLVSLARDKQAAETLLEHFEQL 158 (277)
T ss_pred HHHHHHHC-------CCCCCCEEEeC-CHHHHHHHH--HhcCCCEEEEECcCCCC---CceEEEcCHHHHHHHHHHHHHh
Confidence 99999754 35688888874 222222222 24679999999997764 56777888877642 2
Q ss_pred C---CCeeEEEeeecce-eEEEEEEEcceEEEEEecCCC-CCchhhhhccceeeeeCCccCCCcCCCcCCCCCCCCCCCC
Q 022979 191 E---PPMLLQEFVNHGG-ILFKIYIIGETIKVVRRFSLP-NVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPP 265 (289)
Q Consensus 191 ~---~P~VlQeFINH~g-vLfKVYVvGd~v~vv~R~SLp-n~~~~~~~~~~~~~~f~~vS~~~~~~~~~~ld~~~~e~p~ 265 (289)
. .++++||||++.+ .-+.|+|+|+++..+.++..+ ++..+ .+.-+.. .. ...
T Consensus 159 ~~~~~~~lvQe~I~~~~~~~~rv~v~~~~~~~~~~r~~~~~~~~n-------------~~~g~~~---~~-----~~l-- 215 (277)
T TIGR00768 159 NGPQNLFYVQEYIKKPGGRDIRVFVVGDEVIAAIYRITSGHWRTN-------------LARGGKA---EP-----CPL-- 215 (277)
T ss_pred cccCCcEEEEeeecCCCCceEEEEEECCEEEEEEEEcCCCchhhh-------------hhcCCee---ee-----cCC--
Confidence 2 3899999999874 889999999988765443311 11111 0000000 00 011
Q ss_pred HHHHHHHHHHHHHHhCCeEeee
Q 022979 266 RPLLERLARELRHRLVNILVFC 287 (289)
Q Consensus 266 ~~~l~~iA~~LR~~LgL~LFG~ 287 (289)
.+.+.++|..+-+.||+..+|.
T Consensus 216 ~~~~~~~a~~~~~~l~~~~~~v 237 (277)
T TIGR00768 216 TEEIEELAIKAAKALGLDVVGI 237 (277)
T ss_pred CHHHHHHHHHHHHHhCCCeEEE
Confidence 1358889999999999976653
No 4
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.20 E-value=1e-09 Score=100.51 Aligned_cols=202 Identities=16% Similarity=0.204 Sum_probs=130.4
Q ss_pred HHHHHHHhcCcEEEEccCCCC---CC---CC-CCceEEEecccchHHHHHHHHHHHhCCCeEEeCChhHHhhhccHHHHH
Q 022979 47 KLEILARNKGISFVAIDQNRP---LS---DQ-GPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSML 119 (289)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~p---l~---~Q-gp~DvILHKltd~~~~~~l~~y~~~hP~v~ViDP~~~i~~l~dR~~~l 119 (289)
.+...++++|++...+|.+.. +. .+ .++|+++=.-........+....+.+ ++.++.|+++++...|+..++
T Consensus 14 ~l~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~le~~-g~~~~n~~~~~~~~~dK~~~~ 92 (280)
T TIGR02144 14 MLIEELEKLGLPYRKIYVPALPLPFGERPKELEDVDVAIIRCVSQSRALYSARLLEAL-GVPVINSSHVIEACGDKIFTY 92 (280)
T ss_pred HHHHHHHHcCCceEEEEhhheEEEcCCCccccCCCCEEEEcCcchhhHHHHHHHHHHC-CCcEECcHHHHHHHhhHHHHH
Confidence 477888999999998876632 11 12 36898776522211111223333443 577899999999999999999
Q ss_pred HHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEeccCCCCC----------
Q 022979 120 QDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE---------- 189 (289)
Q Consensus 120 ~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~---------- 189 (289)
+.+++. .|.+|+...+. +..++... ...+.||+|+||....| +..+.++.+.+.+..
T Consensus 93 ~~l~~~-------gip~P~t~~~~-~~~~~~~~--~~~~~~P~vvKP~~g~~---g~gv~~v~~~~~l~~~~~~~~~~~~ 159 (280)
T TIGR02144 93 LKLAKA-------GVPTPRTYLAF-DREAALKL--AEALGYPVVLKPVIGSW---GRLVALIRDKDELESLLEHKEVLGG 159 (280)
T ss_pred HHHHHC-------CcCCCCeEeeC-CHHHHHHH--HHHcCCCEEEEECcCCC---cCCEEEECCHHHHHHHHHHHHhhcC
Confidence 988754 36678887764 22222222 23568999999998655 466888888876543
Q ss_pred -CCCCeeEEEeeecceeEEEEEEEcceEE-EEEecCCCCCchhhhhccceeeeeCCccCCCcCCCcCCCCCCCCCCCCHH
Q 022979 190 -LEPPMLLQEFVNHGGILFKIYIIGETIK-VVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRP 267 (289)
Q Consensus 190 -L~~P~VlQeFINH~gvLfKVYVvGd~v~-vv~R~SLpn~~~~~~~~~~~~~~f~~vS~~~~~~~~~~ld~~~~e~p~~~ 267 (289)
...|+++||||.+.+.-+.+||+|+++. .+.|.+ .++..+. +. . ... ...+..+
T Consensus 160 ~~~~~~ivQefI~~~~~d~~v~vig~~~~~~~~r~~-~~~~~~~-------------~~-g-----~~~----~~~~~~~ 215 (280)
T TIGR02144 160 SQHKLFYIQEYINKPGRDIRVFVIGDEAIAAIYRYS-NHWRTNT-------------AR-G-----GKA----EPCPLDE 215 (280)
T ss_pred CcCCeEEEEcccCCCCCceEEEEECCEEEEEEEEcC-Cchhhhh-------------hc-C-----Cce----eccCCCH
Confidence 2357999999998778899999999865 455654 2222110 00 0 000 0011124
Q ss_pred HHHHHHHHHHHHhCCeEee
Q 022979 268 LLERLARELRHRLVNILVF 286 (289)
Q Consensus 268 ~l~~iA~~LR~~LgL~LFG 286 (289)
.+.++|..+-+.+|+.+.|
T Consensus 216 ~~~~~a~~~~~~lg~~~~~ 234 (280)
T TIGR02144 216 EVEELAVKAAEAVGGGVVA 234 (280)
T ss_pred HHHHHHHHHHHHhCCCeEE
Confidence 4789999999999987554
No 5
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=98.82 E-value=3.7e-07 Score=85.42 Aligned_cols=202 Identities=16% Similarity=0.182 Sum_probs=128.6
Q ss_pred HHHHHHHhcCcEEEEccCCCC---CC-----------CCCCceEEEecccch--HHHHHHHHHHHhCCCeEEeCChhHHh
Q 022979 47 KLEILARNKGISFVAIDQNRP---LS-----------DQGPFDVVLHKLSGM--EWCKIIEDYRQKHPEVTILDPPDAIK 110 (289)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~p---l~-----------~Qgp~DvILHKltd~--~~~~~l~~y~~~hP~v~ViDP~~~i~ 110 (289)
.+..-++++|++.+.+|.+.. +. ...++|+++=.+... .......+..+.. ++.++.++.+++
T Consensus 17 ~~~~a~~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~le~~-g~~v~n~~~a~~ 95 (300)
T PRK10446 17 RLREAAIQRGHLVEILDPLSCYMNINPAASSIHYKGRKLPHFDAVIPRIGTAITFYGTAALRQFEML-GSYPLNESVAIA 95 (300)
T ss_pred HHHHHHHHcCCeEEEEehHHceEecCCCcccEEECCcccCCCCEEEEcCCCchhhHHHHHHHHHHHC-CCceecCHHHHH
Confidence 377778899999999997742 21 123789998755432 2222233344443 367788889999
Q ss_pred hhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEeccCCCC--
Q 022979 111 HLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLS-- 188 (289)
Q Consensus 111 ~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~-- 188 (289)
...|+..+.+.+.+. .|.+|+...+. +.+++...+. .-..||+|+||....| |..+.++.+.+.+.
T Consensus 96 ~~~dK~~~~~~l~~~-------gip~P~t~~~~-~~~~~~~~~~-~~~~~P~VvKP~~g~~---g~GV~~v~~~~~~~~~ 163 (300)
T PRK10446 96 RARDKLRSMQLLARQ-------GIDLPVTGIAH-SPDDTSDLID-MVGGAPLVVKLVEGTQ---GIGVVLAETRQAAESV 163 (300)
T ss_pred hhhcHHHHHHHHHHc-------CCCCCCEEEeC-CHHHHHHHHH-HhCCCCEEEEECCCCC---cccEEEEcCHHHHHHH
Confidence 999999999998754 36688887764 2222222222 2236999999999655 45666777766543
Q ss_pred -----CCCCCeeEEEeeecc-eeEEEEEEEcceEE-EEEecCC-CCCchhhhhccceeeeeCCccCCCcCCCcCCCCCCC
Q 022979 189 -----ELEPPMLLQEFVNHG-GILFKIYIIGETIK-VVRRFSL-PNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGI 260 (289)
Q Consensus 189 -----~L~~P~VlQeFINH~-gvLfKVYVvGd~v~-vv~R~SL-pn~~~~~~~~~~~~~~f~~vS~~~~~~~~~~ld~~~ 260 (289)
....++++||||++. |.=+-|+|+|+++. ++.|-+- .++... .+. ..... .
T Consensus 164 ~~~~~~~~~~~lvQe~I~~~~g~d~rv~vig~~~~~~~~r~~~~~~~~~n-------------~~~-g~~~~-------~ 222 (300)
T PRK10446 164 IDAFRGLNAHILVQEYIKEAQGCDIRCLVVGDEVVAAIERRAKEGDFRSN-------------LHR-GGAAS-------V 222 (300)
T ss_pred HHHHHhcCCCEEEEeeeccCCCceEEEEEECCEEEEEEEEecCCCchhhe-------------ecc-CCeec-------c
Confidence 345689999999874 88999999998754 4555331 122111 000 00000 0
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCeE
Q 022979 261 AELPPRPLLERLARELRHRLVNIL 284 (289)
Q Consensus 261 ~e~p~~~~l~~iA~~LR~~LgL~L 284 (289)
.++ .+.++++|...-+.||+.+
T Consensus 223 ~~l--~~~~~~~a~~a~~alg~~~ 244 (300)
T PRK10446 223 ASI--TPQEREIAIKAARTMALDV 244 (300)
T ss_pred CCC--CHHHHHHHHHHHHHhCCCE
Confidence 111 2448899999999999984
No 6
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=98.69 E-value=1.7e-07 Score=82.41 Aligned_cols=141 Identities=26% Similarity=0.381 Sum_probs=70.4
Q ss_pred cHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEeccCCCC-----
Q 022979 114 NRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLS----- 188 (289)
Q Consensus 114 dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~----- 188 (289)
|+..+++.|.+. .|.+|+..+..+ .+++.+-+.+.+ .+|+|.||+..++ ...+.++-+.+.+.
T Consensus 3 dK~~~~~~l~~~-------gipvP~t~~~~~-~~~~~~~~~~~~-~~p~ViKp~~g~~---G~gV~~i~~~~~~~~~l~~ 70 (190)
T PF08443_consen 3 DKLLTLQLLAKA-------GIPVPETRVTNS-PEEAKEFIEELG-GFPVVIKPLRGSS---GRGVFLINSPDELESLLDA 70 (190)
T ss_dssp BHHHHHHHHHHT-------T-----EEEESS-HHHHHHHHHHH---SSEEEE-SB----------EEEESHCHHHHHHH-
T ss_pred CHHHHHHHHHHC-------CcCCCCEEEECC-HHHHHHHHHHhc-CCCEEEeeCCCCC---CCEEEEecCHHHHHHHHHH
Confidence 566667777643 477899888852 333444455555 8999999987543 57788888888654
Q ss_pred --CCCCCeeEEEeeecce-eEEEEEEEcceEEEEEecCCCCCchhhhhccceeeeeCCccCCCcCCCcCCCCCCCCCCCC
Q 022979 189 --ELEPPMLLQEFVNHGG-ILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPP 265 (289)
Q Consensus 189 --~L~~P~VlQeFINH~g-vLfKVYVvGd~v~vv~R~SLpn~~~~~~~~~~~~~~f~~vS~~~~~~~~~~ld~~~~e~p~ 265 (289)
....|+++|+||.+.+ .-+.|||||+++....+.+-++ ++... +.+ .....++ .+. +
T Consensus 71 ~~~~~~~~~~Q~fI~~~~g~d~Rv~Vig~~vv~a~~r~~~~---~d~r~--------n~~------~g~~~~~--~~l-~ 130 (190)
T PF08443_consen 71 FKRLENPILVQEFIPKDGGRDLRVYVIGGKVVGAYRRSSPE---GDFRT--------NLS------RGGKVEP--YDL-P 130 (190)
T ss_dssp ----TTT-EEEE----SS---EEEEEETTEEEEEEE-----------------------------------EE-------
T ss_pred HHhccCcceEeccccCCCCcEEEEEEECCEEEEEEEEecCc---ccchh--------hhc------cCceEEE--ecC-C
Confidence 3468999999999985 9999999999998765555443 11100 001 0001000 112 2
Q ss_pred HHHHHHHHHHHHHHhCCeEeee
Q 022979 266 RPLLERLARELRHRLVNILVFC 287 (289)
Q Consensus 266 ~~~l~~iA~~LR~~LgL~LFG~ 287 (289)
+-+.++|..+.++|||.+-|.
T Consensus 131 -~e~~~~a~~~~~~lgl~~~gi 151 (190)
T PF08443_consen 131 -EEIKELALKAARALGLDFAGI 151 (190)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEE
T ss_pred -HHHHHHHHHHHHHhCCCEEEE
Confidence 458889999999999998774
No 7
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=98.48 E-value=2.9e-06 Score=78.82 Aligned_cols=155 Identities=17% Similarity=0.187 Sum_probs=111.9
Q ss_pred HHHHHHHhcCcEEEEccCCCCCCC---CCCceEEEecccch-HHHHHHHHHHHhCCCeEEeCC-hhHHhhhccHHHHHHH
Q 022979 47 KLEILARNKGISFVAIDQNRPLSD---QGPFDVVLHKLSGM-EWCKIIEDYRQKHPEVTILDP-PDAIKHLHNRQSMLQD 121 (289)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~pl~~---Qgp~DvILHKltd~-~~~~~l~~y~~~hP~v~ViDP-~~~i~~l~dR~~~l~~ 121 (289)
.+....++.|++.+.||.+..+.. ...+|+|+--+.+. .-...++.+.+.. .+.++-+ ..++....|+..+.+.
T Consensus 27 ~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~~~g~~~~~~~~~~~le~~-gi~~~g~~~~~~~~~~dK~~~k~~ 105 (304)
T PRK01372 27 AVLAALREAGYDAHPIDPGEDIAAQLKELGFDRVFNALHGRGGEDGTIQGLLELL-GIPYTGSGVLASALAMDKLRTKLV 105 (304)
T ss_pred HHHHHHHHCCCEEEEEecCcchHHHhccCCCCEEEEecCCCCCCccHHHHHHHHc-CCCccCCCHHHHHHHhCHHHHHHH
Confidence 477778899999999988866654 34689998654221 0012355566665 7888766 7889999999998888
Q ss_pred HhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEeccCCCCC-------CCCCe
Q 022979 122 VADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPM 194 (289)
Q Consensus 122 l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~-------L~~P~ 194 (289)
+.+. .|.+|++..+.+.. +.... ...+.||+|+||....|+ ..+.++.+.+.+.+ ...++
T Consensus 106 l~~~-------gIp~p~~~~~~~~~-~~~~~--~~~~~~P~ivKP~~g~~s---~Gv~~v~~~~el~~~~~~~~~~~~~~ 172 (304)
T PRK01372 106 WQAA-------GLPTPPWIVLTREE-DLLAA--IDKLGLPLVVKPAREGSS---VGVSKVKEEDELQAALELAFKYDDEV 172 (304)
T ss_pred HHHC-------CCCCCCEEEEeCcc-hHHHH--HhhcCCCEEEeeCCCCCC---CCEEEeCCHHHHHHHHHHHHhcCCcE
Confidence 8754 47789998885322 11122 246799999999997765 55778999887642 25689
Q ss_pred eEEEeeecceeEEEEEEEcceEE
Q 022979 195 LLQEFVNHGGILFKIYIIGETIK 217 (289)
Q Consensus 195 VlQeFINH~gvLfKVYVvGd~v~ 217 (289)
++||||+ |.=|-|.|+|+++.
T Consensus 173 lvEe~i~--G~E~~v~vi~~~~~ 193 (304)
T PRK01372 173 LVEKYIK--GRELTVAVLGGKAL 193 (304)
T ss_pred EEEcccC--CEEEEEEEECCCcc
Confidence 9999998 67888999998654
No 8
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=3.9e-06 Score=80.26 Aligned_cols=184 Identities=21% Similarity=0.225 Sum_probs=120.6
Q ss_pred CCceEEEecccchHHH-HHHHHHHHhCCCeEEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCch
Q 022979 72 GPFDVVLHKLSGMEWC-KIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIP 150 (289)
Q Consensus 72 gp~DvILHKltd~~~~-~~l~~y~~~hP~v~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~ 150 (289)
..+|+++=.-+...-. -.+-+..+ .=++.||+|+++++...|..-.++.+... .+.+|.-+++... .+..
T Consensus 77 ~~~D~i~~R~~~~~~~~~~~~~~~E-~~G~~viN~p~~i~~~~nK~~~~~~l~~~-------~ipvP~T~i~~~~-~~~~ 147 (318)
T COG0189 77 DELDVIIMRKDPPFDFATRFLRLAE-RKGVPVINDPQSIRRCRNKLYTTQLLAKA-------GIPVPPTLITRDP-DEAA 147 (318)
T ss_pred ccCCEEEEecCCchhhHHHHHHHHH-HcCCeEECCHHHHHhhhhHHHHHHHHHhc-------CCCCCCEEEEcCH-HHHH
Confidence 3788888776554322 11112222 23799999999999999999888888642 4678998888532 2232
Q ss_pred hHHHhcCCccceEeeeccccCCCCceeeEEEeccC-CCCCC--------CCCeeEEEeeecceeEEEEEEEcceEEEEEe
Q 022979 151 DQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRF-SLSEL--------EPPMLLQEFVNHGGILFKIYIIGETIKVVRR 221 (289)
Q Consensus 151 ~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~-gL~~L--------~~P~VlQeFINH~gvLfKVYVvGd~v~vv~R 221 (289)
...+..+.||+|.||+-++|. .....+-+.+ .|..+ .-++++||||+=...=+|.|+|||...+..+
T Consensus 148 -~~~~~~~g~pvVlKp~~Gs~G---~gV~~v~~~d~~l~~~~e~~~~~~~~~~ivQeyi~~~~~~~rrivv~~~~~~~~y 223 (318)
T COG0189 148 -EFVAEHLGFPVVLKPLDGSGG---RGVFLVEDADPELLSLLETLTQEGRKLIIVQEYIPKAKRDDRRVLVGGGEVVAIY 223 (318)
T ss_pred -HHHHHhcCCCEEEeeCCCCCc---cceEEecCCChhHHHHHHHHhccccceEehhhhcCcccCCcEEEEEeCCEEeEEe
Confidence 333457889999999998876 4566777777 54422 2369999999999999999999999998876
Q ss_pred cCCCCCchhhhhccceeeeeCCccCCCcCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHhCCeEee
Q 022979 222 FSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLVNILVF 286 (289)
Q Consensus 222 ~SLpn~~~~~~~~~~~~~~f~~vS~~~~~~~~~~ld~~~~e~p~~~~l~~iA~~LR~~LgL~LFG 286 (289)
.+.=++... -|. ++.+ ..+..+ ..+. .+-+++||....+.||+.+-|
T Consensus 224 -~~~R~~~~~------~~R----~N~a---~Gg~~e--~~~l--~~e~~elA~kaa~~lGl~~~G 270 (318)
T COG0189 224 -ALARIPASG------DFR----SNLA---RGGRAE--PCEL--TEEEEELAVKAAPALGLGLVG 270 (318)
T ss_pred -eeccccCCC------Cce----eecc---cccccc--ccCC--CHHHHHHHHHHHHHhCCeEEE
Confidence 222111110 000 1111 111111 1112 356899999999999999877
No 9
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=98.41 E-value=1.9e-06 Score=80.36 Aligned_cols=154 Identities=18% Similarity=0.200 Sum_probs=107.3
Q ss_pred HHHHHHhcCcEEEEccCCCC-------C-------CCC-CCceEEEecccchH-HHHHHHHHHHhCCCeEEeCC-hhHHh
Q 022979 48 LEILARNKGISFVAIDQNRP-------L-------SDQ-GPFDVVLHKLSGME-WCKIIEDYRQKHPEVTILDP-PDAIK 110 (289)
Q Consensus 48 l~~~~~~~gi~~v~iD~~~p-------l-------~~Q-gp~DvILHKltd~~-~~~~l~~y~~~hP~v~ViDP-~~~i~ 110 (289)
+....++.|++.+.+|.+.. + ..+ ..+|+|+-=+.+.. -...++...+.+ ++.++-+ +.++.
T Consensus 23 i~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~g~~~~~~~~~~~le~~-gip~~g~~~~~~~ 101 (315)
T TIGR01205 23 VLKALRDLGYDVYPVDIDKMGSWTYKDLPQLILELGALLEGIDVVFPVLHGRYGEDGTIQGLLELM-GIPYTGSGVLASA 101 (315)
T ss_pred HHHHHhhcCCEEEEEeecCCccccccchHHHHhhccccCCCCCEEEEecCCCCCCCcHHHHHHHHc-CCCccCCCHHHHH
Confidence 66667888999999988761 1 111 47899998543220 001345555554 6777765 88999
Q ss_pred hhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchh---HHHhcCCccceEeeeccccCCCCceeeEEEeccCCC
Q 022979 111 HLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPD---QVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSL 187 (289)
Q Consensus 111 ~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~---~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL 187 (289)
...|+..+.+.+++. .|.+|++..+..+..+..+ ......+.||+|+||....|+ ..+.++.|.+.|
T Consensus 102 ~~~dK~~~~~~l~~~-------gip~p~~~~~~~~~~~~~~~~~~~~~~~~~~P~vvKP~~~~~s---~Gv~~v~~~~el 171 (315)
T TIGR01205 102 LSMDKLLTKLLWKAL-------GLPTPDYIVLTQNRASADELECEQVAEPLGFPVIVKPAREGSS---VGVSKVKSEEEL 171 (315)
T ss_pred HHHCHHHHHHHHHHC-------CCCCCCEEEEecccccchhhhHHHHHHhcCCCEEEEeCCCCCc---cCEEEECCHHHH
Confidence 999999999998754 4778999888522211111 111246899999999887664 568899998877
Q ss_pred CC-------CCCCeeEEEeeecceeEEEEEEEcc
Q 022979 188 SE-------LEPPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 188 ~~-------L~~P~VlQeFINH~gvLfKVYVvGd 214 (289)
.. ...++++||||+ |.=|-|.|+|+
T Consensus 172 ~~~~~~~~~~~~~~lvEe~i~--G~e~~v~vi~~ 203 (315)
T TIGR01205 172 QAALDEAFEYDEEVLVEQFIK--GRELEVSILGN 203 (315)
T ss_pred HHHHHHHHhcCCcEEEEcCCC--CEEEEEEEECC
Confidence 53 356899999996 78899999994
No 10
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=98.26 E-value=2.1e-05 Score=73.60 Aligned_cols=106 Identities=16% Similarity=0.272 Sum_probs=73.2
Q ss_pred HHhCCCeEEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCC
Q 022979 94 RQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSA 173 (289)
Q Consensus 94 ~~~hP~v~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~ 173 (289)
..++--.++..++++++.+.|+..|.+.+.+.. +.+|++..+++ .+++.+.+....+.||+|+||....|
T Consensus 91 l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~g-------ip~p~~~~~~~-~~~~~~~~~~~~~~~P~viKP~~g~~-- 160 (326)
T PRK12767 91 FEEIGVKVLVSSKEVIEICNDKWLTYEFLKENG-------IPTPKSYLPES-LEDFKAALAKGELQFPLFVKPRDGSA-- 160 (326)
T ss_pred HHHcCcEEEeCCHHHHHHHhcHHHHHHHHHHcC-------CCCCCEEcccC-HHHHHhhhhcccCCCCEEEEeCCCCC--
Confidence 334433456788999999999999999998653 56788877642 22222222235789999999976555
Q ss_pred CceeeEEEeccCCCCCC---CCCeeEEEeeecceeEEEEEEE
Q 022979 174 KSHELFLAYDRFSLSEL---EPPMLLQEFVNHGGILFKIYII 212 (289)
Q Consensus 174 ~SH~Maivf~~~gL~~L---~~P~VlQeFINH~gvLfKVYVv 212 (289)
|..+.++.+.+.|.+. ..++++|||| .|.-|-+-++
T Consensus 161 -s~gv~~v~~~~el~~~~~~~~~~lvqeyi--~G~e~~v~~~ 199 (326)
T PRK12767 161 -SIGVFKVNDKEELEFLLEYVPNLIIQEFI--EGQEYTVDVL 199 (326)
T ss_pred -ccCeEEeCCHHHHHHHHHhCCCeEEEecc--CCceEEEEEE
Confidence 5678889888877531 2499999999 4555555444
No 11
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=98.11 E-value=0.00011 Score=69.59 Aligned_cols=159 Identities=19% Similarity=0.284 Sum_probs=97.9
Q ss_pred HHHHHHhcCcEEEEccCCCC-------------------------CCCC-----CCceEEEecccc---hHH--HHHHHH
Q 022979 48 LEILARNKGISFVAIDQNRP-------------------------LSDQ-----GPFDVVLHKLSG---MEW--CKIIED 92 (289)
Q Consensus 48 l~~~~~~~gi~~v~iD~~~p-------------------------l~~Q-----gp~DvILHKltd---~~~--~~~l~~ 92 (289)
|..-|.++|.+..-++++.- +.+. ..||+|+-+-.. ..+ ...+-+
T Consensus 23 L~~aa~~rG~~v~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~v~~R~~~~~~~~~~~~~~~l~ 102 (312)
T TIGR01380 23 LMEEAQKRGHELFFYEPGDLSVVNGEVFARARPVRVGPNKQDWYTLGEKVRLSLGELDAVLMRKDPPFDMEYIYATYLLE 102 (312)
T ss_pred HHHHHHHcCCEEEEEehhheEEECCEEEEEEEEEEeccCCcceeecCcccccccccCCEEEEeCCCCCChhhhHHHHHHH
Confidence 77778889988776665511 0100 267888876421 222 123444
Q ss_pred HHHhCCCeEEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCC
Q 022979 93 YRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGS 172 (289)
Q Consensus 93 y~~~hP~v~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs 172 (289)
+.+.. ++.|+.|+++++...|+..+++... .+|+-++.+ +.+++.+-+.+.| |+|+||+.+.|.
T Consensus 103 ~le~~-g~~viN~p~~i~~~~dK~~~~~~~~-----------~vP~T~v~~-~~~~~~~~~~~~g---~vVvKPl~G~~G 166 (312)
T TIGR01380 103 LADPT-GTLVINSPQGLRDANEKLFTLQFPK-----------VIPPTLVTR-DKAEIRAFLAEHG---DIVLKPLDGMGG 166 (312)
T ss_pred HHHhC-CCeEEeCHHHHHhhhhHHHHhhCcC-----------CCCCEEEeC-CHHHHHHHHHHcC---CEEEEECCCCCC
Confidence 44443 5889999999998888766555421 367766543 4333444444444 899999998765
Q ss_pred CCceeeEEEec-cCCC-------CCC-CCCeeEEEeeec-ceeEEEEEEEcceEE--EEEecCCC
Q 022979 173 AKSHELFLAYD-RFSL-------SEL-EPPMLLQEFVNH-GGILFKIYIIGETIK--VVRRFSLP 225 (289)
Q Consensus 173 ~~SH~Maivf~-~~gL-------~~L-~~P~VlQeFINH-~gvLfKVYVvGd~v~--vv~R~SLp 225 (289)
. .+..+-. ...+ ..+ ..|+++|+||+. .+-=+-|+|||+++. ...|.+-+
T Consensus 167 ~---gv~~v~~~~~~~~~~~~~~~~~~~~~~~vQ~yI~~~~~~D~Rv~vv~g~vv~~ai~R~~~~ 228 (312)
T TIGR01380 167 E---GIFRLDPGDPNFNSILETMTQRGREPVMAQRYLPEIKEGDKRILLIDGEPIGAAVARIPAG 228 (312)
T ss_pred c---eEEEEcCCCccHHHHHHHHHhccCCcEEEEeccccccCCCEEEEEECCeEEEEEEEecCCC
Confidence 3 4444433 2222 122 469999999984 235689999999963 56665544
No 12
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=98.10 E-value=9.3e-05 Score=78.25 Aligned_cols=152 Identities=15% Similarity=0.124 Sum_probs=101.7
Q ss_pred HHHHHHHhcCcEEEEccCCCCCC---CCCCceEEEecccchHHHHHHHHHHHhCCCeEEeCChhHHhhhccHHHHHHHHh
Q 022979 47 KLEILARNKGISFVAIDQNRPLS---DQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVA 123 (289)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~pl~---~Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~ViDP~~~i~~l~dR~~~l~~l~ 123 (289)
.++..|.++|+.+..+|.+..+- ..+..+.+..- ...-.|+..+.....|+..+.+.|.
T Consensus 436 ~li~aA~~rGi~v~~ld~~~~~l~l~~g~~~~~v~~~------------------~~t~~~s~~s~~~~~DK~~tk~lL~ 497 (752)
T PRK02471 436 ILLFDAIQRGIQVEILDEQDQFLKLQKGDHVEYVKNG------------------NMTSKDNYISPLIMENKVVTKKILA 497 (752)
T ss_pred HHHHHHHHCCCeEEEEcCCcceehhccCCCeeEEEec------------------cccCCCHHHHHHHhhCHHHHHHHHH
Confidence 47777999999999999864432 22234443221 2455677777877779998888887
Q ss_pred hcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEec---cCCCC-------CCCCC
Q 022979 124 DLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYD---RFSLS-------ELEPP 193 (289)
Q Consensus 124 ~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~---~~gL~-------~L~~P 193 (289)
+. .|.+|++.++.+ .++...... .-+.||+|+||....++ ....++-+ .+.+. +....
T Consensus 498 ~~-------GIpvP~~~~~~~-~e~a~~~~~-~~~g~PvVVKP~~g~~G---~GV~~~~~~~~~eel~~A~~~a~~~~~~ 565 (752)
T PRK02471 498 EA-------GFPVPAGDEFTS-LEEALADYS-LFADKAIVVKPKSTNFG---LGISIFKEPASLEDYEKALEIAFREDSS 565 (752)
T ss_pred HC-------CcCCCCEEEEcC-HHHHHHHHH-HhcCCCEEEEECCCCCc---CCeEEecCcCCHHHHHHHHHHHHhcCCc
Confidence 43 477899988852 222212222 11379999999986654 34445433 33332 22457
Q ss_pred eeEEEeeecceeEEEEEEEcceEEEEEecCCCCCchh
Q 022979 194 MLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKR 230 (289)
Q Consensus 194 ~VlQeFINH~gvLfKVYVvGd~v~vv~R~SLpn~~~~ 230 (289)
+++||||. |.=|-|+|||+++..+.+.--+++.-+
T Consensus 566 vlVEEfI~--G~E~Rv~Viggkvvaa~~R~pa~V~GD 600 (752)
T PRK02471 566 VLVEEFIV--GTEYRFFVLDGKVEAVLLRVPANVVGD 600 (752)
T ss_pred EEEEeccc--CCEEEEEEECCEEEEEEEEeCCccccC
Confidence 99999995 899999999999888777777777543
No 13
>PRK05246 glutathione synthetase; Provisional
Probab=98.10 E-value=0.00014 Score=68.87 Aligned_cols=159 Identities=18% Similarity=0.250 Sum_probs=97.4
Q ss_pred HHHHHHHhcCcEEEEccCCCCC---------------C--CC-------------CCceEEEecccc---h--HHHHHHH
Q 022979 47 KLEILARNKGISFVAIDQNRPL---------------S--DQ-------------GPFDVVLHKLSG---M--EWCKIIE 91 (289)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~pl---------------~--~Q-------------gp~DvILHKltd---~--~~~~~l~ 91 (289)
.+...|+++|++...+++..-. . .+ ..+|+|+-+-.. . .+...+-
T Consensus 23 ~l~~aa~~~G~~v~~~~~~dl~~~~~~i~~~~~~~~~~~~~~~w~~~~~~~~~~l~~~D~v~~R~~~~~~~~~~~~~~~l 102 (316)
T PRK05246 23 AMMLEAQRRGHELFYYEPDDLSLRGGEVVARARPLTVRDDKGDWYELGEEQRLPLADFDVILMRKDPPFDMEYIYATYLL 102 (316)
T ss_pred HHHHHHHHcCCEEEEEehhhcEEECCEEEEEEEEEEeccCCccceeccccccCccccCCEEEEcCCCCCChHHHHHHHHH
Confidence 3777888899887766554110 0 00 137999866422 1 1222334
Q ss_pred HHHHhCCCeEEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccC
Q 022979 92 DYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDG 171 (289)
Q Consensus 92 ~y~~~hP~v~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~G 171 (289)
+..+.. .+.++.++++++...|...+++... .+|+....+ +.+.+.+-+.+.| |+|+||+..+|
T Consensus 103 ~~le~~-g~~v~N~p~~l~~~~dK~~~~~l~~-----------~vP~T~~~~-~~~~~~~~~~~~~---~vVlKP~~G~~ 166 (316)
T PRK05246 103 ERAERP-GTLVVNKPQSLRDANEKLFTLWFPE-----------LMPPTLVTR-DKAEIRAFRAEHG---DIILKPLDGMG 166 (316)
T ss_pred HHHHhC-CCeEECCHHHHHhCccHHHHHhhhc-----------cCCCEEEeC-CHHHHHHHHHHCC---CEEEEECCCCC
Confidence 444444 7999999999999988877665421 367766553 3333334444444 99999999877
Q ss_pred CCCceeeEEE-eccCCCC-------CC-CCCeeEEEeeecc-eeEEEEEEEcceEEE--EEecCC
Q 022979 172 SAKSHELFLA-YDRFSLS-------EL-EPPMLLQEFVNHG-GILFKIYIIGETIKV--VRRFSL 224 (289)
Q Consensus 172 s~~SH~Maiv-f~~~gL~-------~L-~~P~VlQeFINH~-gvLfKVYVvGd~v~v--v~R~SL 224 (289)
... ...+ .+...+. .+ ..|+++|+||.-. +-=.-|+|+|+++.. +.|-+-
T Consensus 167 G~g---V~~i~~~~~~~~~~~~~l~~~~~~~~lvQ~~I~~~~~~D~Rv~vv~g~vv~~a~~R~~~ 228 (316)
T PRK05246 167 GAG---IFRVKADDPNLGSILETLTEHGREPVMAQRYLPEIKEGDKRILLVDGEPVGYALARIPA 228 (316)
T ss_pred ccc---eEEEeCCCccHHHHHHHHHHccCCeEEEEeccccCCCCCEEEEEECCEEhhheeEecCC
Confidence 543 3333 3333322 22 4699999999652 234689999998664 556443
No 14
>PRK12458 glutathione synthetase; Provisional
Probab=98.08 E-value=5.8e-05 Score=72.56 Aligned_cols=130 Identities=15% Similarity=0.181 Sum_probs=81.7
Q ss_pred CceEEEecccc---hHHHHHHHH------HHHhCCCeEEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEc
Q 022979 73 PFDVVLHKLSG---MEWCKIIED------YRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVIT 143 (289)
Q Consensus 73 p~DvILHKltd---~~~~~~l~~------y~~~hP~v~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~ 143 (289)
.||+|+..-.. ......+.. ...+...+.++.++++++...|...+++..+ +.+|+.++..
T Consensus 79 ~~d~V~~R~~~~~~~~~~~~l~~~~~~~~~~~e~~g~~viN~p~~i~~~~dK~~~~~l~~----------~~vP~T~v~~ 148 (338)
T PRK12458 79 GFDVIFLRANPPLDPLARNWADSVGIAFGRLAARDGVLVVNDPDGLRIANNKLYFQSFPE----------EVRPTTHISR 148 (338)
T ss_pred hCCEEEEeCCCCCChHHHHHHHHhchhHHHHHHhCCCeEecCHHHHHhccCHHHHHhhcc----------CCCCCEEEeC
Confidence 58999997533 222233331 1223347899999999999999886644321 3478877653
Q ss_pred CCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEeccCC--CCCC------CCCeeEEEeeecc-eeEEEEEEEcc
Q 022979 144 KDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFS--LSEL------EPPMLLQEFVNHG-GILFKIYIIGE 214 (289)
Q Consensus 144 ~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~g--L~~L------~~P~VlQeFINH~-gvLfKVYVvGd 214 (289)
+.+.+.+-+++.| ..|+|+||+...|+. ...++.+.+. +..+ ..|+++||||... +-=.-|+|+|+
T Consensus 149 -~~~~~~~~~~~~~-~~pvVvKPl~G~gG~---gV~~v~~~~~~~~~~ile~~~~~~~~ivQeyI~~~~~gDiRv~vv~g 223 (338)
T PRK12458 149 -NKEYIREFLEESP-GDKMILKPLQGSGGQ---GVFLIEKSAQSNLNQILEFYSGDGYVIAQEYLPGAEEGDVRILLLNG 223 (338)
T ss_pred -CHHHHHHHHHHcC-CCeEEEEECCCCCcc---CeEEEecCChhhHHHHHHHHhhCCCEEEEEcccCCCCCCEEEEEECC
Confidence 3322323333322 235999999987754 4555654442 3211 4589999999852 44688899999
Q ss_pred eEE
Q 022979 215 TIK 217 (289)
Q Consensus 215 ~v~ 217 (289)
++.
T Consensus 224 ~~v 226 (338)
T PRK12458 224 EPL 226 (338)
T ss_pred EEE
Confidence 888
No 15
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=97.99 E-value=8.5e-05 Score=71.83 Aligned_cols=151 Identities=20% Similarity=0.219 Sum_probs=94.6
Q ss_pred HHHHHHhcCcEEEEccCCCCCCCCCCceEEEe-cccchH------------------HHHHHHHHHHhCCCeEEeCChhH
Q 022979 48 LEILARNKGISFVAIDQNRPLSDQGPFDVVLH-KLSGME------------------WCKIIEDYRQKHPEVTILDPPDA 108 (289)
Q Consensus 48 l~~~~~~~gi~~v~iD~~~pl~~Qgp~DvILH-Kltd~~------------------~~~~l~~y~~~hP~v~ViDP~~~ 108 (289)
+..-|++.|+.++-+|.+..-....-.|-.+. -..|.+ +....-++.+++ ..+.-++++
T Consensus 17 l~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~e~e~i~~~~l~~l~~~--~~~~p~~~~ 94 (372)
T PRK06019 17 LALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITYEFENVPAEALDALAAR--VPVPPGPDA 94 (372)
T ss_pred HHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEeCcCCCCHHHHHHHhcC--CeeCcCHHH
Confidence 55567889999999998642221111222221 222221 111122344444 457789999
Q ss_pred HhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEeccCCCC
Q 022979 109 IKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLS 188 (289)
Q Consensus 109 i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~ 188 (289)
++...||..|-+.++++ .|.+|++..+++ .+++.+.. ..+.||+|+||.. |...++...++.+++.|.
T Consensus 95 ~~~~~dK~~~k~~l~~~-------Gip~p~~~~v~s-~~~l~~~~--~~~g~P~vlKp~~--~g~~g~Gv~~v~~~~el~ 162 (372)
T PRK06019 95 LAIAQDRLTEKQFLDKL-------GIPVAPFAVVDS-AEDLEAAL--ADLGLPAVLKTRR--GGYDGKGQWVIRSAEDLE 162 (372)
T ss_pred HHHhcCHHHHHHHHHHC-------CCCCCCceEeCC-HHHHHHHH--HHcCCcEEEEeCC--CCcCCCCeEEECCHHHHH
Confidence 99999999999998764 466899988852 22222221 3578999999975 333467788999988775
Q ss_pred C----C-CCCeeEEEeeecceeEEEEEEEc
Q 022979 189 E----L-EPPMLLQEFVNHGGILFKIYIIG 213 (289)
Q Consensus 189 ~----L-~~P~VlQeFINH~gvLfKVYVvG 213 (289)
. + ..++++||||+- +.=|=|-+++
T Consensus 163 ~a~~~~~~~~~ivEe~I~~-~~E~sv~~~~ 191 (372)
T PRK06019 163 AAWALLGSVPCILEEFVPF-EREVSVIVAR 191 (372)
T ss_pred HHHHhcCCCCEEEEecCCC-CeEEEEEEEE
Confidence 3 2 358999999984 3334444444
No 16
>PRK07206 hypothetical protein; Provisional
Probab=97.98 E-value=0.00013 Score=70.83 Aligned_cols=101 Identities=22% Similarity=0.330 Sum_probs=67.9
Q ss_pred CeEEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCC-ccceEeeeccccCCCCcee
Q 022979 99 EVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGL-KLPLVAKPLVVDGSAKSHE 177 (289)
Q Consensus 99 ~v~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl-~fP~I~Kp~vA~Gs~~SH~ 177 (289)
.++.-.+++.+....|+..|.+.+++. .|.+|++..++ +.+++...+...|. .+|+|+||....|+ ..
T Consensus 93 ~l~~~~~~~~~~~~~dK~~~r~~l~~~-------gi~~p~~~~~~-~~~e~~~~~~~~g~~~~P~VvKP~~g~gs---~g 161 (416)
T PRK07206 93 TPQYSNDPALSSARRNKAEMINALAEA-------GLPAARQINTA-DWEEAEAWLRENGLIDRPVVIKPLESAGS---DG 161 (416)
T ss_pred CCCcCCChhhHHHhhCHHHHHHHHHHc-------CCCcccEEecC-CHHHHHHHHHhcCCCCCCEEEeCCCCCCC---CC
Confidence 333456678888889999999998764 46688888874 22223333333232 44999999887775 57
Q ss_pred eEEEeccCCCCCC--------------CCCeeEEEeeecceeEEEEEEE
Q 022979 178 LFLAYDRFSLSEL--------------EPPMLLQEFVNHGGILFKIYII 212 (289)
Q Consensus 178 Maivf~~~gL~~L--------------~~P~VlQeFINH~gvLfKVYVv 212 (289)
+.++.+.+.|.+. ..++++||||. |.-|=|-++
T Consensus 162 v~~v~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~i~--G~E~sv~~~ 208 (416)
T PRK07206 162 VFICPAKGDWKHAFNAILGKANKLGLVNETVLVQEYLI--GTEYVVNFV 208 (416)
T ss_pred EEEeCCHHHHHHHHHHHHhccccCCCCCCeEEEEEccc--cEEEEEEEE
Confidence 7889998876321 25799999996 455555444
No 17
>PRK14016 cyanophycin synthetase; Provisional
Probab=97.96 E-value=0.0002 Score=75.45 Aligned_cols=149 Identities=15% Similarity=0.238 Sum_probs=101.6
Q ss_pred HHHHHHHhcCcEEEEccCCCCCCCCCCceEEEecccchHHHHHHHHHHHhCCCeEEeCChhHHhhhccHHHHHHHHhhcc
Q 022979 47 KLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLN 126 (289)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~ViDP~~~i~~l~dR~~~l~~l~~l~ 126 (289)
.+++.|.++||.+..++-. . ++|=-++.. .+.++.... --++..+++...|+..+.+.+++.
T Consensus 164 ~I~~~A~~~gi~~~~l~~~-~---------~v~lgyG~~-~~~i~~~~~------~~~s~~a~~i~~DK~~tk~lL~~~- 225 (727)
T PRK14016 164 AIVDAAEARGIPYIRLGDG-S---------LVQLGYGKY-QRRIQAAET------DQTSAIAVDIACDKELTKRLLAAA- 225 (727)
T ss_pred HHHHHHHHcCCCEEEeCCC-C---------eEecCCcHH-HHHHHHhcC------CCCcHHHHHHhCCHHHHHHHHHHC-
Confidence 5788899999999887632 1 122223331 122322222 156778899999999999988754
Q ss_pred cCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEE-EeccCCCCC-------CCCCeeEEE
Q 022979 127 LSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL-AYDRFSLSE-------LEPPMLLQE 198 (289)
Q Consensus 127 ~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Mai-vf~~~gL~~-------L~~P~VlQe 198 (289)
.|.+|+...+. +.+++.+.. ..+.||+|+||.... .+..|.+ +.+++.|.. ...++++|+
T Consensus 226 ------GIPvP~~~~v~-s~~~a~~~a--~~iG~PvVVKP~~G~---~G~GV~~~v~~~~el~~a~~~a~~~~~~viVEe 293 (727)
T PRK14016 226 ------GVPVPEGRVVT-SAEDAWEAA--EEIGYPVVVKPLDGN---HGRGVTVNITTREEIEAAYAVASKESSDVIVER 293 (727)
T ss_pred ------CcCCCCeeEeC-CHHHHHHHH--HHcCCCEEEEECCCC---CCCceEEecCCHHHHHHHHHHHHHhCCeEEEEE
Confidence 46788887774 222222222 357899999998643 3567887 778776642 246899999
Q ss_pred eeecceeEEEEEEEcceEEEEEecCCCCC
Q 022979 199 FVNHGGILFKIYIIGETIKVVRRFSLPNV 227 (289)
Q Consensus 199 FINH~gvLfKVYVvGd~v~vv~R~SLpn~ 227 (289)
||. |.-|.|||+|+++..+.|.--+.+
T Consensus 294 ~I~--G~d~Rv~Vvgg~vvaa~~r~~~~v 320 (727)
T PRK14016 294 YIP--GKDHRLLVVGGKLVAAARREPPHV 320 (727)
T ss_pred ecC--CceEEEEEECCEEEEEEEecCcEE
Confidence 997 677999999999999888866654
No 18
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=97.91 E-value=9.8e-05 Score=68.92 Aligned_cols=146 Identities=15% Similarity=0.162 Sum_probs=104.5
Q ss_pred HHHHHHhcCcEEEEccCCCCCC----CCCCceEEEecccchH-HHHHHHHHHHhCCCeEEe-CChhHHhhhccHHHHHHH
Q 022979 48 LEILARNKGISFVAIDQNRPLS----DQGPFDVVLHKLSGME-WCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQD 121 (289)
Q Consensus 48 l~~~~~~~gi~~v~iD~~~pl~----~Qgp~DvILHKltd~~-~~~~l~~y~~~hP~v~Vi-DP~~~i~~l~dR~~~l~~ 121 (289)
+....++.|.+.+.+|.+..+. +...+|+++--+.+.. -...++.+.+.+ +++++ .++.++...+|+..+.+.
T Consensus 24 i~~al~~~g~~~~~i~~~~~~~~~~~~~~~~D~v~~~~~g~~ge~~~~~~~le~~-gip~~G~~~~a~~i~~DK~~~k~~ 102 (299)
T PRK14571 24 VKKALEKLGYEVTVFDVDEDFLKKVDQLKSFDVVFNVLHGTFGEDGTLQAILDFL-GIRYTGSDAFSSMICFDKLLTYRF 102 (299)
T ss_pred HHHHHHHcCCeEEEEccCchHHHHhhhccCCCEEEEeCCCCCCCccHHHHHHHHc-CCCccCCCHHHHHHHcCHHHHHHH
Confidence 5555677899999998765432 2357899998775431 012366666665 67777 448899999999988777
Q ss_pred HhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEeccCCCCC-------CCCCe
Q 022979 122 VADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPM 194 (289)
Q Consensus 122 l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~-------L~~P~ 194 (289)
++. .|.+|++..+... .....+.||+|+||....|+ -.+.++.|.+.|.. -..++
T Consensus 103 l~~--------~ip~p~~~~~~~~-------~~~~~l~~P~vvKP~~g~~s---~Gv~~v~~~~el~~~~~~~~~~~~~v 164 (299)
T PRK14571 103 LKG--------TVEIPDFVEIKEF-------MKTSPLGYPCVVKPRREGSS---IGVFICESDEEFQHALKEDLPRYGSV 164 (299)
T ss_pred Hhc--------CCCCCCEEEEech-------hhhhhcCCCEEEecCCCCCc---CCEEEECCHHHHHHHHHHHHhhCCcE
Confidence 651 2678998888421 12246899999999886664 55678999888742 13479
Q ss_pred eEEEeeecceeEEEEEEEcc
Q 022979 195 LLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 195 VlQeFINH~gvLfKVYVvGd 214 (289)
++||||. |.=|=|-|+|+
T Consensus 165 lVEeyI~--G~E~sv~vl~~ 182 (299)
T PRK14571 165 IVQEYIP--GREMTVSILET 182 (299)
T ss_pred EEEcccc--ceEEEEEEEcC
Confidence 9999996 78999999986
No 19
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=97.86 E-value=0.00078 Score=63.21 Aligned_cols=150 Identities=13% Similarity=0.128 Sum_probs=102.6
Q ss_pred HHHHHHhcCcEEEEccCCC-CCCC---CCCceEEEecccchHH-HHHHHHHHHhCCCeEEeC-ChhHHhhhccHHHHHHH
Q 022979 48 LEILARNKGISFVAIDQNR-PLSD---QGPFDVVLHKLSGMEW-CKIIEDYRQKHPEVTILD-PPDAIKHLHNRQSMLQD 121 (289)
Q Consensus 48 l~~~~~~~gi~~v~iD~~~-pl~~---Qgp~DvILHKltd~~~-~~~l~~y~~~hP~v~ViD-P~~~i~~l~dR~~~l~~ 121 (289)
.....++.|.+.+.+|.+. .+-. ..++|+++-=+.+..- ...++.+.+.+ ++.++- .+.++...+|+..+-+.
T Consensus 27 v~~aL~~~g~~~~~~~~~~~~~~~~l~~~~~d~vf~~lhG~~ge~~~i~~~le~~-gip~~Gs~~~a~~l~~DK~~~k~~ 105 (296)
T PRK14569 27 VLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALHGEDGENGRVSALLEML-EIKHTSSSMKSSVITMDKMISKEI 105 (296)
T ss_pred HHHHHHHcCCEEEEEcCCchhHHHHhhccCCCEEEEeCCCCCCCChHHHHHHHHc-CCCeeCCCHHHHHHHHCHHHHHHH
Confidence 5555577899999998763 2111 2467876654433210 12355566655 566654 56899999999999888
Q ss_pred HhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEeccCCCCC----C--CCCee
Q 022979 122 VADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE----L--EPPML 195 (289)
Q Consensus 122 l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~----L--~~P~V 195 (289)
+++. .|.+|++..+.... . ....+.||+|+||....| |..+.+|.+++.|.. + ..+++
T Consensus 106 l~~~-------gIptp~~~~~~~~~----~--~~~~~~~P~vVKP~~ggs---s~Gv~~v~~~~eL~~a~~~~~~~~~~l 169 (296)
T PRK14569 106 LMHH-------RMPTPMAKFLTDKL----V--AEDEISFPVAVKPSSGGS---SIATFKVKSIQELKHAYEEASKYGEVM 169 (296)
T ss_pred HHHC-------CCCCCCeEEEchhh----h--hHhhcCCCEEEEeCCCCC---CcCeEEcCCHHHHHHHHHHHHhcCCEE
Confidence 8754 46688887775211 1 134689999999976433 577889999998752 1 24799
Q ss_pred EEEeeecceeEEEEEEEcceE
Q 022979 196 LQEFVNHGGILFKIYIIGETI 216 (289)
Q Consensus 196 lQeFINH~gvLfKVYVvGd~v 216 (289)
+||||. |.=|=|.|+|+..
T Consensus 170 vEefI~--G~E~tv~vl~~~~ 188 (296)
T PRK14569 170 IEQWVT--GKEITVAIVNDEV 188 (296)
T ss_pred EEcccc--cEEEEEEEECCcC
Confidence 999995 6889999999864
No 20
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=97.86 E-value=0.00029 Score=77.04 Aligned_cols=107 Identities=19% Similarity=0.360 Sum_probs=74.7
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCcee
Q 022979 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHE 177 (289)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~ 177 (289)
.+.++ -++++++.+.||..+.+.++++ .|.+|++..+.+ .+++.+. ...+.||+|+||....|+ ..
T Consensus 653 Gi~i~G~s~~~i~~~~DK~~f~~lL~~~-------GIp~P~~~~v~s-~ee~~~~--~~~igyPvIVKP~~~~Gg---~g 719 (1050)
T TIGR01369 653 GVPILGTSPESIDRAEDREKFSELLDEL-------GIPQPKWKTATS-VEEAVEF--ASEIGYPVLVRPSYVLGG---RA 719 (1050)
T ss_pred CCcEECCCHHHHHHHCCHHHHHHHHHHC-------CcCCCCeEEECC-HHHHHHH--HHhcCCCEEEEECCCCCC---CC
Confidence 45444 6789999999999999988865 366889888852 2222222 236789999999876664 77
Q ss_pred eEEEeccCCCCC---------CCCCeeEEEeeecc-eeEEEEEEEcceEEE
Q 022979 178 LFLAYDRFSLSE---------LEPPMLLQEFVNHG-GILFKIYIIGETIKV 218 (289)
Q Consensus 178 Maivf~~~gL~~---------L~~P~VlQeFINH~-gvLfKVYVvGd~v~v 218 (289)
|.++.|++.|.. -..|+++||||..| .+-.=+++-|+.+.+
T Consensus 720 v~iv~~~eeL~~~l~~a~~~s~~~~vlVeefI~~G~E~~Vd~l~d~g~v~i 770 (1050)
T TIGR01369 720 MEIVYNEEELRRYLEEAVEVSPEHPVLIDKYLEDAVEVDVDAVSDGEEVLI 770 (1050)
T ss_pred eEEECCHHHHHHHHHHHHHhCCCCCEEEeecCCCCeEEEEEEEEeCCEEEE
Confidence 999999998753 24689999999754 333334455555544
No 21
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=97.81 E-value=0.00029 Score=67.86 Aligned_cols=150 Identities=13% Similarity=0.238 Sum_probs=92.4
Q ss_pred HHHHHHHhcCcEEEEccCCCCCCC-----------------------CCCceEEEecccchHHHHHHHHHHHhCCCeEEe
Q 022979 47 KLEILARNKGISFVAIDQNRPLSD-----------------------QGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL 103 (289)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~pl~~-----------------------Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~Vi 103 (289)
.+...+++.|+.++.+|.+..-.. ...+|+|+--..+.. ...+.+. .+. .+.+.
T Consensus 26 ~~~~a~~~~G~~v~~~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~vi~~~e~~~-~~~~~~l-~~~-g~~~~ 102 (395)
T PRK09288 26 EVAIEAQRLGVEVIAVDRYANAPAMQVAHRSHVIDMLDGDALRAVIEREKPDYIVPEIEAIA-TDALVEL-EKE-GFNVV 102 (395)
T ss_pred HHHHHHHHCCCEEEEEeCCCCCchHHhhhheEECCCCCHHHHHHHHHHhCCCEEEEeeCcCC-HHHHHHH-Hhc-CCeeC
Confidence 355567788999988887632100 013444443222211 1223333 333 45566
Q ss_pred CChhHHhhhccHHHHHHHHh-hcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEe
Q 022979 104 DPPDAIKHLHNRQSMLQDVA-DLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAY 182 (289)
Q Consensus 104 DP~~~i~~l~dR~~~l~~l~-~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf 182 (289)
.++++++...||..+-+.+. ++ .|.+|++..+++ .+++.+.. ..+.||+|+||....| |..+.++.
T Consensus 103 ~~~~a~~~~~dK~~~k~~l~~~~-------gip~p~~~~~~s-~~~l~~~~--~~~g~P~VvKP~~g~~---s~Gv~~v~ 169 (395)
T PRK09288 103 PTARATRLTMNREGIRRLAAEEL-------GLPTSPYRFADS-LEELRAAV--EEIGYPCVVKPVMSSS---GKGQSVVR 169 (395)
T ss_pred CCHHHHHHHhCHHHHHHHHHHhC-------CCCCCCceEECC-HHHHHHHH--HhcCCCEEEEeCCCcC---CCCeEEEC
Confidence 77899999999998888763 33 467899988853 22222222 3688999999985444 56678999
Q ss_pred ccCCCCCC-----------CCCeeEEEeeecceeEEEEEEEc
Q 022979 183 DRFSLSEL-----------EPPMLLQEFVNHGGILFKIYIIG 213 (289)
Q Consensus 183 ~~~gL~~L-----------~~P~VlQeFINH~gvLfKVYVvG 213 (289)
+++.|.+. ..++++||||.. +.=+-|.+++
T Consensus 170 ~~~el~~~~~~~~~~~~~~~~~~lvEefi~~-~~E~sv~~~~ 210 (395)
T PRK09288 170 SPEDIEKAWEYAQEGGRGGAGRVIVEEFIDF-DYEITLLTVR 210 (395)
T ss_pred CHHHHHHHHHHHHhhccccCCCEEEEEecCC-CEEEEEEEEE
Confidence 98877421 268999999974 4445555553
No 22
>PRK02186 argininosuccinate lyase; Provisional
Probab=97.78 E-value=0.00027 Score=75.87 Aligned_cols=94 Identities=21% Similarity=0.338 Sum_probs=66.6
Q ss_pred CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEec
Q 022979 104 DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYD 183 (289)
Q Consensus 104 DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~ 183 (289)
.++++++...|+..|-+.+++. .|.+|++..+++. ++..+.. ..+.||+|+||.-..|+ ..+.++.+
T Consensus 97 ~~~ea~~~~~dK~~~r~~L~~~-------GIp~P~~~~v~~~-~e~~~~~--~~~~~PvVVKP~~g~gS---~GV~~v~~ 163 (887)
T PRK02186 97 ANTEAIRTCRDKKRLARTLRDH-------GIDVPRTHALALR-AVALDAL--DGLTYPVVVKPRMGSGS---VGVRLCAS 163 (887)
T ss_pred CCHHHHHHhcCHHHHHHHHHHc-------CCCCCCEEEeCCH-HHHHHHH--HhCCCCEEEEeCCCCCC---CCeEEECC
Confidence 3578888889999888888753 4678999888532 1122222 36789999999887665 56778898
Q ss_pred cCCCCC--------CCCCeeEEEeeecceeEEEEEEE
Q 022979 184 RFSLSE--------LEPPMLLQEFVNHGGILFKIYII 212 (289)
Q Consensus 184 ~~gL~~--------L~~P~VlQeFINH~gvLfKVYVv 212 (289)
.+.|.. -..++++||||. |.-|=|-++
T Consensus 164 ~~el~~a~~~~~~~~~~~~lvEEfI~--G~E~sVe~i 198 (887)
T PRK02186 164 VAEAAAHCAALRRAGTRAALVQAYVE--GDEYSVETL 198 (887)
T ss_pred HHHHHHHHHHHHhcCCCcEEEeeccc--CCcEEEEEE
Confidence 887642 156899999997 455655544
No 23
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=97.73 E-value=0.0003 Score=67.12 Aligned_cols=143 Identities=22% Similarity=0.289 Sum_probs=90.2
Q ss_pred HHHHHHHhcCcEEEEccCCCCCCCCCCce-EEEecccchHH-------------------HHHHHHHHHhCCCeEEeCCh
Q 022979 47 KLEILARNKGISFVAIDQNRPLSDQGPFD-VVLHKLSGMEW-------------------CKIIEDYRQKHPEVTILDPP 106 (289)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~pl~~Qgp~D-vILHKltd~~~-------------------~~~l~~y~~~hP~v~ViDP~ 106 (289)
-+...|++.|+.++-+|.+..-....-.| .++...+|.+. ...+..+.+. .+.+.-++
T Consensus 13 ~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~e~e~i~~~~l~~l~~~--g~~~~p~~ 90 (352)
T TIGR01161 13 MLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITFEFEHVDVEALEKLEAR--GVKLFPSP 90 (352)
T ss_pred HHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEeCcCcCCHHHHHHHHhC--CCeECCCH
Confidence 36667788999999999863211111112 12233344221 1123333333 25566888
Q ss_pred hHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEeccCC
Q 022979 107 DAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFS 186 (289)
Q Consensus 107 ~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~g 186 (289)
++++...||..+-+.+++. .|.+|++..+++ .+++.+. ...+.||+|+||.... ..+..+.++.+++.
T Consensus 91 ~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~--~~~~g~P~vvKp~~~g--~~g~Gv~~v~~~~e 158 (352)
T TIGR01161 91 DALAIIQDRLTQKQFLQKL-------GLPVPPFLVIKD-EEELDAA--LQELGFPVVLKARTGG--YDGRGQYRIRNEAD 158 (352)
T ss_pred HHHHHhcCHHHHHHHHHHc-------CCCCCCccEeCC-HHHHHHH--HHHcCCCEEEEeCCCC--CCCCCEEEECCHHH
Confidence 9999999999999888754 466899988853 2112111 1357899999998642 23567788999887
Q ss_pred CCC----C-CCCeeEEEeeecc
Q 022979 187 LSE----L-EPPMLLQEFVNHG 203 (289)
Q Consensus 187 L~~----L-~~P~VlQeFINH~ 203 (289)
|.. + ..++++||||+.+
T Consensus 159 l~~a~~~~~~~~~lvEe~I~~~ 180 (352)
T TIGR01161 159 LPQAAKELGDRECIVEEFVPFE 180 (352)
T ss_pred HHHHHHhcCCCcEEEEecCCCC
Confidence 742 2 3489999999853
No 24
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=97.73 E-value=0.00042 Score=66.39 Aligned_cols=99 Identities=13% Similarity=0.201 Sum_probs=67.9
Q ss_pred eEEeCChhHHhhhccHHHHHHHH-hhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceee
Q 022979 100 VTILDPPDAIKHLHNRQSMLQDV-ADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHEL 178 (289)
Q Consensus 100 v~ViDP~~~i~~l~dR~~~l~~l-~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~M 178 (289)
+.+.-++++++...||..+.+.+ ++. .|.+|++..+++ .+++... ...+.||+|+||....| |-.+
T Consensus 86 ~~~~~~~~~~~~~~dK~~~~~~~~~~~-------gip~p~~~~~~~-~~~~~~~--~~~~g~P~VvKP~~g~~---s~gv 152 (380)
T TIGR01142 86 YFVVPNARATKLTMNREGIRRLAAEEL-------GLPTSRYMFADS-LDELREA--VEKIGYPCVVKPVMSSS---GKGQ 152 (380)
T ss_pred CeeCCCHHHHHHhhCHHHHHHHHHHHC-------CCCCCCceEeCC-HHHHHHH--HHHcCCCEEEEECCCcC---CCCe
Confidence 44566788888889998877764 433 467899888853 1222222 23688999999986544 4678
Q ss_pred EEEeccCCCCC-----------CCCCeeEEEeeecceeEEEEEEE
Q 022979 179 FLAYDRFSLSE-----------LEPPMLLQEFVNHGGILFKIYII 212 (289)
Q Consensus 179 aivf~~~gL~~-----------L~~P~VlQeFINH~gvLfKVYVv 212 (289)
.++.+++.|.. ...++++||||.. +.=|-|.++
T Consensus 153 ~~v~~~~el~~~~~~~~~~~~~~~~~~ivEe~i~~-~~E~sv~~~ 196 (380)
T TIGR01142 153 SVVRGPEDIEKAWEYAQEGARGGAGRVIVEEFIDF-DYEITLLTV 196 (380)
T ss_pred EEECCHHHHHHHHHHHHhhccCCCCCEEEEEecCC-CEEEEEEEE
Confidence 89999988742 1358999999984 445555555
No 25
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=97.73 E-value=0.0012 Score=67.51 Aligned_cols=152 Identities=17% Similarity=0.239 Sum_probs=100.7
Q ss_pred ccc--hHHHHHHHhcCcEEEEccCCCCCCCCCCceEEEecccchHHHHHHHHHHHhCCCeEEeCChhHHhhhccHHHHHH
Q 022979 43 FLQ--PKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQ 120 (289)
Q Consensus 43 ~~~--~~l~~~~~~~gi~~v~iD~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~ViDP~~~i~~l~dR~~~l~ 120 (289)
++. ..+++.|+++|+.++.+|-+.. .|.+-- -.+..+++ + ....+.+..+++...|+..+.+
T Consensus 240 l~~y~~~Ii~~a~~~Gi~~~~~~se~~-----~~~L~~--g~~~~~~~------~---s~~~~~s~~ai~~~~DK~~tk~ 303 (547)
T TIGR03103 240 LNPYARIIVDEARRRGIEVEVLDAEGG-----LFRLSL--GGRSIRCR------E---SLSELTSAVAMSLCDDKRLTRR 303 (547)
T ss_pred cCHHHHHHHHHHHHcCCcEEEECCCCC-----EEEecC--CceEEEEE------e---ccCCCCCHHHHHHhcCHHHHHH
Confidence 554 4589999999999999774422 221100 00001110 1 1224458889999999999999
Q ss_pred HHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEE-EeccCCCCC-------CCC
Q 022979 121 DVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL-AYDRFSLSE-------LEP 192 (289)
Q Consensus 121 ~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Mai-vf~~~gL~~-------L~~ 192 (289)
.+++. .|.+|+...+. +.+++.+..++.| |+|+||.... .+..|.+ +.+++.|.. ...
T Consensus 304 lL~~a-------GIpVP~~~~~~-~~~~~~~~~~~~G---~vVVKP~~G~---~G~Gv~v~v~~~~eL~~a~~~a~~~~~ 369 (547)
T TIGR03103 304 LVSEA-------GLQVPEQQLAG-NGEAVEAFLAEHG---AVVVKPVRGE---QGKGISVDVRTPDDLEAAIAKARQFCD 369 (547)
T ss_pred HHHHc-------CcCCCCEEEEC-CHHHHHHHHHHhC---CEEEEECCCC---CCcCeEEecCCHHHHHHHHHHHHhcCC
Confidence 98753 46789998875 2222333333334 7999997754 3577776 788877642 345
Q ss_pred CeeEEEeeecceeEEEEEEEcceEEEEEecCCCC
Q 022979 193 PMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPN 226 (289)
Q Consensus 193 P~VlQeFINH~gvLfKVYVvGd~v~vv~R~SLpn 226 (289)
++++|+||. |.=|.|+|||+++..+.+.--|+
T Consensus 370 ~vlvEe~i~--G~d~Rv~Vigg~vvaa~~R~~~~ 401 (547)
T TIGR03103 370 RVLLERYVP--GEDLRLVVIDFEVVAAAVRRPPE 401 (547)
T ss_pred cEEEEEecc--CCeEEEEEECCEEEEEEEecCcE
Confidence 899999995 78899999999999876655444
No 26
>PRK06849 hypothetical protein; Provisional
Probab=97.68 E-value=0.00064 Score=65.77 Aligned_cols=91 Identities=23% Similarity=0.310 Sum_probs=65.7
Q ss_pred EEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEE
Q 022979 101 TILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL 180 (289)
Q Consensus 101 ~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Mai 180 (289)
+..-+++.++.++|+..+.+.++++ .|.+|++..+++ .+++ ..+......||+|+||...+|+ ..+.+
T Consensus 103 v~~~~~~~~~~~~DK~~~~~~~~~~-------GipvP~t~~v~~-~~~l-~~~~~~~~~~P~vlKP~~~~~~---~~v~~ 170 (389)
T PRK06849 103 VLHFDFELLLLLHNKWEFAEQARSL-------GLSVPKTYLITD-PEAI-RNFMFKTPHTPYVLKPIYSRFV---RRVDL 170 (389)
T ss_pred EEcCCHHHHHHhhCHHHHHHHHHHc-------CCCCCCEEEeCC-HHHH-HHHhhcCCCCcEEEEeCcccCC---CeEEE
Confidence 3467889999999999999999865 367899998852 2222 2222223479999999988775 45566
Q ss_pred EeccCCCCCC----CCCeeEEEeeecc
Q 022979 181 AYDRFSLSEL----EPPMLLQEFVNHG 203 (289)
Q Consensus 181 vf~~~gL~~L----~~P~VlQeFINH~ 203 (289)
+.+++.+..+ ..|+++||||.=.
T Consensus 171 ~~~~~~l~~~~~~~~~~~ivQe~I~G~ 197 (389)
T PRK06849 171 LPKEAALKELPISKDNPWVMQEFIQGK 197 (389)
T ss_pred ecCHHHhcccccCCCCCeEEEEEecCC
Confidence 7777767655 3489999999843
No 27
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.66 E-value=0.0013 Score=72.18 Aligned_cols=100 Identities=20% Similarity=0.343 Sum_probs=69.6
Q ss_pred CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEec
Q 022979 104 DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYD 183 (289)
Q Consensus 104 DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~ 183 (289)
-++++++...||..+.+.++++ .|.+|++..+.+ .++..+.. ..+.||+|+||.-..| +..|.++.+
T Consensus 659 ~s~~ai~~~~DK~~~~~~L~~~-------GIp~P~~~~~~s-~ee~~~~~--~~igyPvvVKP~~~~G---g~Gv~iv~~ 725 (1066)
T PRK05294 659 TSPDAIDLAEDRERFSKLLEKL-------GIPQPPNGTATS-VEEALEVA--EEIGYPVLVRPSYVLG---GRAMEIVYD 725 (1066)
T ss_pred CCHHHHHHhCCHHHHHHHHHHc-------CcCCCCeEEECC-HHHHHHHH--HhcCCCeEEEeCCCCC---CCcEEEECC
Confidence 5688999999999999988765 366888888852 21222222 3578999999966544 578999999
Q ss_pred cCCCCC---------CCCCeeEEEeeecc-eeEEEEEEEcceE
Q 022979 184 RFSLSE---------LEPPMLLQEFVNHG-GILFKIYIIGETI 216 (289)
Q Consensus 184 ~~gL~~---------L~~P~VlQeFINH~-gvLfKVYVvGd~v 216 (289)
++.|.. -..|+++||||... .+-.=+++-|+.+
T Consensus 726 ~eeL~~~~~~a~~~s~~~~vlIEefI~G~~E~sV~~v~dg~~v 768 (1066)
T PRK05294 726 EEELERYMREAVKVSPDHPVLIDKFLEGAIEVDVDAICDGEDV 768 (1066)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEecCCCCEEEEEEEEecCCeE
Confidence 988752 24689999999754 3333344444433
No 28
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=97.62 E-value=0.0006 Score=64.99 Aligned_cols=128 Identities=18% Similarity=0.181 Sum_probs=89.4
Q ss_pred CceEEEecccchHH-HHHHHHHHHhCCCeEEeCC-hhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCC--
Q 022979 73 PFDVVLHKLSGMEW-CKIIEDYRQKHPEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLS-- 148 (289)
Q Consensus 73 p~DvILHKltd~~~-~~~l~~y~~~hP~v~ViDP-~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~-- 148 (289)
.+|+++-=+.+..= ...+|.+.+.+ ++..+=+ ..+....+|+..+-+.+++. .|.+|+++.+......
T Consensus 81 ~~D~vf~~lhG~~gedg~iq~lle~~-gipy~G~~~~a~~l~~DK~~~k~~l~~~-------GIp~p~~~~~~~~~~~~~ 152 (333)
T PRK01966 81 EVDVVFPVLHGPPGEDGTIQGLLELL-GIPYVGCGVLASALSMDKILTKRLLAAA-------GIPVAPYVVLTRGDWEEA 152 (333)
T ss_pred cCCEEEEccCCCCCCCcHHHHHHHHc-CCCccCCCHHHHHHHhCHHHHHHHHHHc-------CCCCCCEEEEeccccchh
Confidence 58888765543210 11356666554 6666654 67888899999999998754 4678888888533221
Q ss_pred chhHHHhcCCccceEeeeccccCCCCceeeEEEeccCCCCC-------CCCCeeEEEeeecceeEEEEEEEcc
Q 022979 149 IPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 149 ~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~-------L~~P~VlQeFINH~gvLfKVYVvGd 214 (289)
..... ...+.||+|+||....|| -.+.+|.+.+.|.. ...++++|+||. |.=|-|.|+|+
T Consensus 153 ~~~~~-~~~~~~P~vVKP~~~gsS---~Gv~~v~~~~el~~a~~~~~~~~~~vlvEefI~--G~E~~v~vl~~ 219 (333)
T PRK01966 153 SLAEI-EAKLGLPVFVKPANLGSS---VGISKVKNEEELAAALDLAFEYDRKVLVEQGIK--GREIECAVLGN 219 (333)
T ss_pred hHHHH-HHhcCCCEEEEeCCCCCc---cCEEEECCHHHHHHHHHHHHhcCCcEEEEcCcC--CEEEEEEEECC
Confidence 11122 246899999999876654 56789999988752 357899999998 68899999996
No 29
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.60 E-value=0.0011 Score=72.80 Aligned_cols=101 Identities=23% Similarity=0.391 Sum_probs=72.5
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCcee
Q 022979 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHE 177 (289)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~ 177 (289)
++.++ -++++++.+.||..+.+.+.++ .|.+|++..+.+ .+++.+. ...+.||+|+||....| +..
T Consensus 654 Gi~ilG~s~e~i~~~~DK~~f~~ll~~~-------GIp~P~~~~~~s-~ee~~~~--~~~igyPvVVKP~~~~G---g~g 720 (1068)
T PRK12815 654 GLTILGTSPDTIDRLEDRDRFYQLLDEL-------GLPHVPGLTATD-EEEAFAF--AKRIGYPVLIRPSYVIG---GQG 720 (1068)
T ss_pred CCeEECCcHHHHHHHcCHHHHHHHHHHc-------CcCCCCeEEeCC-HHHHHHH--HHhcCCCEEEEeCCCCC---CCC
Confidence 44443 5689999999999999998865 366788887742 1111111 23678999999977655 577
Q ss_pred eEEEeccCCCCC-------CCCCeeEEEeeecceeEEEEEEEcc
Q 022979 178 LFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 178 Maivf~~~gL~~-------L~~P~VlQeFINH~gvLfKVYVvGd 214 (289)
|.++.+++.|.+ -..|+++|||| .|.=|=|.++.|
T Consensus 721 v~iv~~~eeL~~~l~~~~s~~~~vlIeefI--~G~E~~Vd~i~d 762 (1068)
T PRK12815 721 MAVVYDEPALEAYLAENASQLYPILIDQFI--DGKEYEVDAISD 762 (1068)
T ss_pred EEEECCHHHHHHHHHHhhcCCCCEEEEEee--cCceEEEEEEEc
Confidence 999999988753 25789999999 345666766654
No 30
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=97.56 E-value=0.0001 Score=62.42 Aligned_cols=92 Identities=17% Similarity=0.287 Sum_probs=54.6
Q ss_pred hccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEeccCCCCCC-
Q 022979 112 LHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL- 190 (289)
Q Consensus 112 l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~L- 190 (289)
+.|+..|.+.+.+. .|.+|++..+++ .+++.+.... +.||+|+||....|+ -.+.++.+++.|...
T Consensus 2 ~~dK~~~~~~~~~~-------gv~~P~~~~~~~-~~~~~~~~~~--~~~p~vvKp~~g~gs---~gv~~~~~~~~l~~~~ 68 (184)
T PF13535_consen 2 CNDKYRMRELLKKA-------GVPVPKTRIVDS-EEELRAFAED--LGFPFVVKPVDGSGS---RGVFIVHSPEELEAAL 68 (184)
T ss_dssp TCCHHHHHHHHHHH-------TS----EEEECS-HHHHHHHHHH--SSSSEEEEESS-STT---TT-EEESSHHHHHHHH
T ss_pred CCCHHHHHHHHHHc-------CcCCCCEEEECC-HHHHHHHHHH--cCCCEEEEcCccccC---CCEEEeCCHHHHHHHH
Confidence 56788888887754 366899998853 2223333333 449999999998774 678889999988643
Q ss_pred ----------CCCeeEEEeeecceeEEEEEEEcceE
Q 022979 191 ----------EPPMLLQEFVNHGGILFKIYIIGETI 216 (289)
Q Consensus 191 ----------~~P~VlQeFINH~gvLfKVYVvGd~v 216 (289)
..++++||||.-...=+-+|+.+..+
T Consensus 69 ~~~~~~~~~~~~~~ivqe~i~g~e~~~~~~~~~G~~ 104 (184)
T PF13535_consen 69 AEIREDSPLGNGPVIVQEYIPGDEYSVDGVVDDGEV 104 (184)
T ss_dssp HHHHHHHS-HSSSEEEEE---SEEEEEEEEEETTEE
T ss_pred HHHHHhcccCCccEEEEEeeeeeeEEEEEEEEcceE
Confidence 35799999999334444444444444
No 31
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=97.55 E-value=0.00097 Score=71.62 Aligned_cols=109 Identities=16% Similarity=0.236 Sum_probs=80.8
Q ss_pred CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEE-Ee
Q 022979 104 DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL-AY 182 (289)
Q Consensus 104 DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Mai-vf 182 (289)
|+..+++...|+..+.+.|++. .|.+|+...+.+ .++..+... .+.||+|+||....+ +..+.+ +.
T Consensus 203 ~s~ia~~ia~DK~~tk~lL~~~-------GIpvP~~~~~~s-~~ea~~~~~--~ig~PvVVKP~~g~~---G~GV~l~v~ 269 (864)
T TIGR02068 203 TSAIAVEIACDKDLTKEILSDA-------GVPVPEGTVVQS-AEDAWEAAQ--DLGYPVVIKPYDGNH---GRGVTINIL 269 (864)
T ss_pred CcHHHHHHHcCHHHHHHHHHHc-------CcCCCCEEEECC-HHHHHHHHH--HcCCCEEEEECCCCC---ccCEEEEeC
Confidence 6777899999999999988753 467899888742 222222222 467999999996543 456777 77
Q ss_pred ccCCCCC-------CCCCeeEEEeeecceeEEEEEEEcceEEEEEecCCCCC
Q 022979 183 DRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNV 227 (289)
Q Consensus 183 ~~~gL~~-------L~~P~VlQeFINH~gvLfKVYVvGd~v~vv~R~SLpn~ 227 (289)
+++.|.+ ...++++|+||. |.=|-|+|+|+++..+.|.--|++
T Consensus 270 s~~el~~a~~~a~~~~~~vlVEefI~--G~e~rvlVv~~~vvaa~~R~p~~V 319 (864)
T TIGR02068 270 TRDEIESAYEAAVEESSGVIVERFIT--GRDHRLLVVGGKVVAVAERVPAHV 319 (864)
T ss_pred CHHHHHHHHHHHHhhCCcEEEEEecc--CCEEEEEEECCEEEEEEEecCCce
Confidence 7776642 245899999996 789999999999999877777764
No 32
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=97.48 E-value=0.0011 Score=64.35 Aligned_cols=133 Identities=12% Similarity=0.169 Sum_probs=88.3
Q ss_pred hHHHHHHHhcCcEEEEccCCCCCCCCCCceEEEecccchHHHHHHHHHHHhCCCeEEe-CChhHHhhhccHHHHHHHHhh
Q 022979 46 PKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVAD 124 (289)
Q Consensus 46 ~~l~~~~~~~gi~~v~iD~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~Vi-DP~~~i~~l~dR~~~l~~l~~ 124 (289)
..+.++|++.++++|-+..+.+| ...+.++.+++ .+.++ -+.++++...|+..+-+.+++
T Consensus 17 ~~l~~~~~~~~id~vi~g~E~~l------------------~~~~~d~l~~~-Gi~~~g~s~~a~~l~~dK~~~k~~l~~ 77 (379)
T PRK13790 17 QAILDFAKQQNVDWVVIGPEQPL------------------IDGLADILRAN-GFKVFGPNKQAAQIEGSKLFAKKIMEK 77 (379)
T ss_pred HHHHHHHHHhCCCEEEECCcHHH------------------HHHHHHHHHhC-CCcEECCCHHHHHHhCCHHHHHHHHHH
Confidence 35888999999988877665432 22344444443 45555 566888999999998888875
Q ss_pred cccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEeccCCCCC---------CCCCee
Q 022979 125 LNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE---------LEPPML 195 (289)
Q Consensus 125 l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~---------L~~P~V 195 (289)
. .|.+|++..+.+ .++..+.+ ..+.||+|+||.-. +.+..+.++.+.+.|.+ ...+++
T Consensus 78 ~-------gIptp~~~~~~~-~~ea~~~~--~~~g~PvVvKp~~~---~~gkGV~iv~~~~el~~a~~~~~~~~~~~~vl 144 (379)
T PRK13790 78 Y-------NIPTADYKEVER-KKDALTYI--ENCELPVVVKKDGL---AAGKGVIIADTIEAARSAIEIMYGDEEEGTVV 144 (379)
T ss_pred C-------CCCCCCEEEECC-HHHHHHHH--HhcCCCEEEEeCCC---CCCCCEEEECCHHHHHHHHHHHHhcCCCCeEE
Confidence 4 466788877742 22222222 25789999999743 34578899999887642 134799
Q ss_pred EEEeeecceeEEEEEEE
Q 022979 196 LQEFVNHGGILFKIYII 212 (289)
Q Consensus 196 lQeFINH~gvLfKVYVv 212 (289)
+||||.- .=|=|.++
T Consensus 145 vEe~i~G--~E~sv~~~ 159 (379)
T PRK13790 145 FETFLEG--EEFSLMTF 159 (379)
T ss_pred EEEcccC--ceEEEEEE
Confidence 9999963 44444444
No 33
>PRK08462 biotin carboxylase; Validated
Probab=97.43 E-value=0.00068 Score=66.82 Aligned_cols=142 Identities=15% Similarity=0.195 Sum_probs=92.0
Q ss_pred hhcc-chHHHHHHHhcCcEEEEccCCCCCCCCCCceEEEecccchHHHHHHHHHHHhCCCeE-EeCChhHHhhhccHHHH
Q 022979 41 KSFL-QPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVT-ILDPPDAIKHLHNRQSM 118 (289)
Q Consensus 41 ~~~~-~~~l~~~~~~~gi~~v~iD~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~-ViDP~~~i~~l~dR~~~ 118 (289)
+++. .+.++.+|++.+++.+--=.. . ++.. ..+.+..+++ ++. +--++++++.+.|+..|
T Consensus 60 ~~y~~~~~l~~~~~~~~~D~i~pg~g-~-------------lse~---~~~a~~~e~~-Gi~~~g~~~~~~~~~~dK~~~ 121 (445)
T PRK08462 60 ESYLNIPAIISAAEIFEADAIFPGYG-F-------------LSEN---QNFVEICSHH-NIKFIGPSVEVMALMSDKSKA 121 (445)
T ss_pred cccCCHHHHHHHHHHcCCCEEEECCC-c-------------cccC---HHHHHHHHHC-CCeEECcCHHHHHHhCCHHHH
Confidence 3554 457999999999887542221 1 1211 1244444554 454 45788999999999999
Q ss_pred HHHHhhcccCCCCCceecCceE--EEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEeccCCCCCC------
Q 022979 119 LQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL------ 190 (289)
Q Consensus 119 l~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~L------ 190 (289)
.+.+++.. |.+|+.. .++ +.++.... ...+.||+|+||....| |..|.++.+++.|...
T Consensus 122 r~~l~~~g-------Ip~pp~~~~~~~-~~~~~~~~--~~~~g~PvvvKP~~g~g---s~Gv~~v~~~~eL~~~~~~~~~ 188 (445)
T PRK08462 122 KEVMKRAG-------VPVIPGSDGALK-SYEEAKKI--AKEIGYPVILKAAAGGG---GRGMRVVEDESDLENLYLAAES 188 (445)
T ss_pred HHHHHHCC-------CCCCCCcccccC-CHHHHHHH--HHHcCCCEEEEeCCCCC---CCCeEEECCHHHHHHHHHHHHH
Confidence 99987643 4565543 232 21112122 23578999999988665 5789999999987531
Q ss_pred -------CCCeeEEEeeecceeEEEEEEEcc
Q 022979 191 -------EPPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 191 -------~~P~VlQeFINH~gvLfKVYVvGd 214 (289)
..++++||||..+ .-|-|.++||
T Consensus 189 ~~~~~~~~~~vlvEe~i~g~-~e~~v~v~~~ 218 (445)
T PRK08462 189 EALSAFGDGTMYMEKFINNP-RHIEVQILGD 218 (445)
T ss_pred HHHhccCCCcEEEeccCCCC-eEEEEEEEEC
Confidence 2469999999753 4477777765
No 34
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=97.35 E-value=0.0022 Score=61.60 Aligned_cols=127 Identities=15% Similarity=0.090 Sum_probs=86.6
Q ss_pred CceE---EEecccchHHHHHHHHHHHhCCCeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCC--
Q 022979 73 PFDV---VLHKLSGMEWCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDS-- 146 (289)
Q Consensus 73 p~Dv---ILHKltd~~~~~~l~~y~~~hP~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~-- 146 (289)
.+|+ .+|.-.+++= .+|.+.+.. +++++ -+..++...+|+..+-+.+++. .|.+|+++.+....
T Consensus 88 ~~d~~f~~~hg~~gEdg--~iq~~le~~-gipy~Gs~~~a~~i~~DK~~~k~~l~~~-------GI~~p~~~~~~~~~~~ 157 (347)
T PRK14572 88 DADIAFLGLHGGAGEDG--RIQGFLDTL-GIPYTGSGVLASALAMDKTRANQIFLQS-------GQKVAPFFELEKLKYL 157 (347)
T ss_pred CcCEEEEecCCCCCCCc--HHHHHHHHc-CcCcCCCCHHHHHHHhCHHHHHHHHHHc-------CCCCCCEEEEEccccc
Confidence 3677 4555555431 255555544 46665 5688999999999999998753 47789998885321
Q ss_pred CCchhHH-HhcCCccceEeeeccccCCCCceeeEEEeccCCCCC-------CCCCeeEEEeeecceeEEEEEEEcc
Q 022979 147 LSIPDQV-FEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 147 ~~~~~~l-~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~-------L~~P~VlQeFINH~gvLfKVYVvGd 214 (289)
....+.+ ....+.||+|+||....| |....++.+++.|.+ ...++++||||. |.=|=|-|+|+
T Consensus 158 ~~~~~~~~~~~~l~~PvvVKP~~ggs---S~GV~~v~~~~el~~a~~~~~~~~~~vlVEefI~--G~E~sv~vi~~ 228 (347)
T PRK14572 158 NSPRKTLLKLESLGFPQFLKPVEGGS---SVSTYKITNAEQLMTLLALIFESDSKVMSQSFLS--GTEVSCGVLER 228 (347)
T ss_pred cChHHHHHHHHhcCCCEEEecCCCCC---CCCEEEECCHHHHHHHHHHHHhcCCCEEEEcCcc--cEEEEEEEEeC
Confidence 1111111 123589999999977433 467789999887753 246899999996 78899999974
No 35
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=97.33 E-value=0.00014 Score=65.23 Aligned_cols=77 Identities=23% Similarity=0.390 Sum_probs=53.9
Q ss_pred ceecCceEEEcCCCCCchh-HHHhcCCccceEeeeccccCCCCceeeEEEeccCCCC-------CCCCCeeEEEeeecce
Q 022979 133 KVRVPRQMVITKDSLSIPD-QVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLS-------ELEPPMLLQEFVNHGG 204 (289)
Q Consensus 133 ~i~~P~~v~i~~~~~~~~~-~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~-------~L~~P~VlQeFINH~g 204 (289)
.|.+|++++++........ ......+.||+|+||... || |-.+.+|.+.+.|. +...+++++||| +|
T Consensus 6 gI~tp~~~~~~~~~~~~~~~~~~~~~l~~P~~VKP~~~-Gs--S~Gi~~v~~~~el~~ai~~~~~~~~~vlVEefI--~G 80 (203)
T PF07478_consen 6 GIPTPPYVVVKKNEDDSDSIEKILEDLGFPLFVKPASE-GS--SIGISKVHNEEELEEAIEKAFKYDDDVLVEEFI--SG 80 (203)
T ss_dssp T-BB-SEEEEETTSHHHHHHHHHHHHHSSSEEEEESST-ST--TTTEEEESSHHHHHHHHHHHTTTHSEEEEEE----SS
T ss_pred CCCCCCEEEEecccccchhHHHHHhhcCCCEEEEECCC-Cc--cEEEEEcCCHHHHHHHHHHHhhhcceEEEEeee--cc
Confidence 5889999999643211111 122457999999999854 43 56678899999875 346789999999 99
Q ss_pred eEEEEEEEcc
Q 022979 205 ILFKIYIIGE 214 (289)
Q Consensus 205 vLfKVYVvGd 214 (289)
.=|-|-|+|+
T Consensus 81 ~E~tv~vl~~ 90 (203)
T PF07478_consen 81 REFTVGVLGN 90 (203)
T ss_dssp EEEEEEEEES
T ss_pred cceEEEEEec
Confidence 9999999994
No 36
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=97.14 E-value=0.006 Score=62.87 Aligned_cols=157 Identities=16% Similarity=0.131 Sum_probs=97.7
Q ss_pred ccEEEEEEechhhhhhccchHHHHHHHhcCcEEEEccCCCCCCCCCCce-EEEecccchHH-------------------
Q 022979 27 ERLVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFD-VVLHKLSGMEW------------------- 86 (289)
Q Consensus 27 ~~~~VGy~l~~kK~~~~~~~~l~~~~~~~gi~~v~iD~~~pl~~Qgp~D-vILHKltd~~~------------------- 86 (289)
...+||....- ....-+...|++.|+.++.+|.+..-..-.-.| .++...+|.+.
T Consensus 21 ~~k~IgIIGgG-----qlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e~v~ 95 (577)
T PLN02948 21 SETVVGVLGGG-----QLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIEHVD 95 (577)
T ss_pred CCCEEEEECCC-----HHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecCCCC
Confidence 45578877766 222236667888999999999874311100011 12222333210
Q ss_pred HHHHHHHHHhCCCeEEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeee
Q 022979 87 CKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKP 166 (289)
Q Consensus 87 ~~~l~~y~~~hP~v~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp 166 (289)
...++ +.+++ .+.+.-++++++...||..+-+.+.+. .|.+|++..+++ .+++.+. ...+.||+|+||
T Consensus 96 ~~~l~-~le~~-gi~v~ps~~al~i~~DK~~~K~~l~~~-------GIptp~~~~v~~-~~el~~~--~~~ig~P~VvKP 163 (577)
T PLN02948 96 VDTLE-ALEKQ-GVDVQPKSSTIRIIQDKYAQKVHFSKH-------GIPLPEFMEIDD-LESAEKA--GDLFGYPLMLKS 163 (577)
T ss_pred HHHHH-HHHhc-CCccCCCHHHHHHhcCHHHHHHHHHHC-------CcCCCCeEEeCC-HHHHHHH--HHhcCCcEEEEe
Confidence 12232 33333 233567889999999999998888754 467899988852 2222222 236789999999
Q ss_pred ccccCCCCceeeEEEeccCCCCC-------CCCCeeEEEeeec
Q 022979 167 LVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNH 202 (289)
Q Consensus 167 ~vA~Gs~~SH~Maivf~~~gL~~-------L~~P~VlQeFINH 202 (289)
... ...+..+.++.+++.|.. ...++++++||+.
T Consensus 164 ~~g--gs~g~Gv~~v~~~~eL~~a~~~~~~~~~~vlvEefI~~ 204 (577)
T PLN02948 164 RRL--AYDGRGNAVAKTEEDLSSAVAALGGFERGLYAEKWAPF 204 (577)
T ss_pred CCC--CCCCCCeEEECCHHHHHHHHHHhhCCCCcEEEEecCCC
Confidence 863 223466889999988742 2468999999976
No 37
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=97.12 E-value=0.0047 Score=60.47 Aligned_cols=109 Identities=12% Similarity=0.090 Sum_probs=73.3
Q ss_pred HHHHHHhCCCeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeecc
Q 022979 90 IEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLV 168 (289)
Q Consensus 90 l~~y~~~hP~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~v 168 (289)
+.+..+++ .+.++ -++++++...|+..|-+.+++. .|.+|++..+++ .+++.+.+ ..+.||+|+||..
T Consensus 78 ~~~~l~~~-gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~~--~~~~~P~VvKP~~ 146 (420)
T PRK00885 78 IVDAFRAA-GLPIFGPTKAAAQLEGSKAFAKDFMARY-------GIPTAAYETFTD-AEEALAYL--DEKGAPIVVKADG 146 (420)
T ss_pred HHHHHHHC-CCcEECcCHHHHHHHcCHHHHHHHHHHc-------CCCCCCeEEeCC-HHHHHHHH--HHcCCCEEEEeCC
Confidence 33333433 55555 5678889999999999998754 366888888742 22222222 3578999999986
Q ss_pred ccCCCCceeeEEEeccCCCCC-------------CCCCeeEEEeeecceeEEEEEEEcc
Q 022979 169 VDGSAKSHELFLAYDRFSLSE-------------LEPPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 169 A~Gs~~SH~Maivf~~~gL~~-------------L~~P~VlQeFINH~gvLfKVYVvGd 214 (289)
..| |..+.++.+++.|.+ ...++++||||. |.=|=|.++.|
T Consensus 147 ~~g---s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~--G~E~sv~~~~~ 200 (420)
T PRK00885 147 LAA---GKGVVVAMTLEEAKAAVDDMLAGNKFGDAGARVVIEEFLD--GEEASFFAFVD 200 (420)
T ss_pred CCC---CCcEEEeCCHHHHHHHHHHHhhcccccCCCCeEEEEEccC--CcEEEEEEEEC
Confidence 555 456889999886532 235799999997 46666666644
No 38
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=97.10 E-value=0.0022 Score=61.44 Aligned_cols=125 Identities=17% Similarity=0.141 Sum_probs=85.8
Q ss_pred CceEEEecccchHH-HHHHHHHHHhCCCeEEeCC-hhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCch
Q 022979 73 PFDVVLHKLSGMEW-CKIIEDYRQKHPEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIP 150 (289)
Q Consensus 73 p~DvILHKltd~~~-~~~l~~y~~~hP~v~ViDP-~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~ 150 (289)
.+|+++--+.+..= .-.+|.+.+.. ++..+-+ +.+....+|+..+.+.+++. .|.+|++..+.... ..
T Consensus 90 ~~d~vf~~lhG~~gedg~iq~lle~~-gipy~G~~~~asai~~DK~~~k~~l~~~-------GIp~p~~~~~~~~~-~~- 159 (343)
T PRK14568 90 RLDVVFPVLHGKLGEDGAIQGLLELS-GIPYVGCDIQSSALCMDKSLAYIVAKNA-------GIATPAFWTVTADE-RP- 159 (343)
T ss_pred cCCEEEEcCCCCCCCchHHHHHHHHc-CCCccCCCHHHHHHHhCHHHHHHHHHHc-------CcCcCCEEEEECCc-hh-
Confidence 47877655543210 12466666654 6776644 66778889999998888754 46788888885322 11
Q ss_pred hHHHhcCCccceEeeeccccCCCCceeeEEEeccCCCCC-------CCCCeeEEEeeecceeEEEEEEEcce
Q 022979 151 DQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGET 215 (289)
Q Consensus 151 ~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~-------L~~P~VlQeFINH~gvLfKVYVvGd~ 215 (289)
....+.||+|+||....| |-.+.+|.+.+.|.. ...++++||||. |.=|=|-|+|+.
T Consensus 160 ---~~~~l~~P~iVKP~~~gs---S~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~--G~E~sv~vl~~~ 223 (343)
T PRK14568 160 ---DAATLTYPVFVKPARSGS---SFGVSKVNSADELDYAIESARQYDSKVLIEEAVV--GSEVGCAVLGNG 223 (343)
T ss_pred ---hhhhcCCCEEEEeCCCCC---CCCEEEeCCHHHHHHHHHHHHhcCCcEEEECCcC--CEEEEEEEEcCC
Confidence 134689999999987644 467778999998752 356899999997 456677788763
No 39
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.10 E-value=0.0055 Score=67.25 Aligned_cols=91 Identities=16% Similarity=0.253 Sum_probs=65.1
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCcee
Q 022979 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHE 177 (289)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~ 177 (289)
++.++ =++++++...||..+.+.++++ .+.+|++..+++ .+++.+. ...+.||+|+||.... .+..
T Consensus 112 Gv~~~g~~~~~i~~~~DK~~~k~~l~~~-------Gipvp~~~~v~s-~~e~~~~--~~~ig~PvVVKP~~g~---gg~G 178 (1066)
T PRK05294 112 GVELIGAKLEAIDKAEDRELFKEAMKKI-------GLPVPRSGIAHS-MEEALEV--AEEIGYPVIIRPSFTL---GGTG 178 (1066)
T ss_pred CCEEECCCHHHHHHhcCHHHHHHHHHHC-------CcCCCCeeeeCC-HHHHHHH--HHHcCCCeEEEcCCCC---CCCC
Confidence 35444 4688999999999999988765 366899988852 2222222 2357899999998544 4567
Q ss_pred eEEEeccCCCCCC---------CCCeeEEEeeec
Q 022979 178 LFLAYDRFSLSEL---------EPPMLLQEFVNH 202 (289)
Q Consensus 178 Maivf~~~gL~~L---------~~P~VlQeFINH 202 (289)
+.++.+++.|... ..++++||||+.
T Consensus 179 v~iv~~~eeL~~a~~~~~~~s~~~~vlvEe~I~G 212 (1066)
T PRK05294 179 GGIAYNEEELEEIVERGLDLSPVTEVLIEESLLG 212 (1066)
T ss_pred eEEECCHHHHHHHHHHHHhhCCCCeEEEEEcccC
Confidence 8899999987532 247999999974
No 40
>PRK05586 biotin carboxylase; Validated
Probab=97.08 E-value=0.001 Score=65.87 Aligned_cols=112 Identities=13% Similarity=0.159 Sum_probs=75.3
Q ss_pred HHHHHHhCCCeEEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceE--EEcCCCCCchhHHHhcCCccceEeeec
Q 022979 90 IEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPL 167 (289)
Q Consensus 90 l~~y~~~hP~v~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~~~~l~~agl~fP~I~Kp~ 167 (289)
+.+..+..-=..+--++++++.+.||..+-+.+++. .|.+|++. .++ +.+++.+. ...+.||+|+||.
T Consensus 91 ~a~~~~~~gi~~~g~s~~~~~~~~DK~~~k~~l~~~-------GIpvp~~~~~~~~-~~~e~~~~--~~~igyPvvvKP~ 160 (447)
T PRK05586 91 FAKMCKECNIVFIGPDSETIELMGNKSNAREIMIKA-------GVPVVPGSEGEIE-NEEEALEI--AKEIGYPVMVKAS 160 (447)
T ss_pred HHHHHHHCCCcEECcCHHHHHhhCCHHHHHHHHHHC-------CCCCCCCcccccC-CHHHHHHH--HHHcCCCEEEEEC
Confidence 333334442223557889999999999999988754 36677763 333 22222121 2368899999997
Q ss_pred cccCCCCceeeEEEeccCCCCCC-------------CCCeeEEEeeecceeEEEEEEEcce
Q 022979 168 VVDGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET 215 (289)
Q Consensus 168 vA~Gs~~SH~Maivf~~~gL~~L-------------~~P~VlQeFINH~gvLfKVYVvGd~ 215 (289)
... .|..|.++.+++.|.+. ..++++||||... .-|-|.|++|.
T Consensus 161 ~gg---gg~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~g~-~ei~v~v~~d~ 217 (447)
T PRK05586 161 AGG---GGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENP-KHIEFQILGDN 217 (447)
T ss_pred CCC---CCCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCCC-eEEEEEEEECC
Confidence 744 46889999999987432 3579999999854 44777777763
No 41
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=97.07 E-value=0.0091 Score=65.50 Aligned_cols=152 Identities=16% Similarity=0.227 Sum_probs=93.9
Q ss_pred HHHHHHhcCcEEEEccCCCCCC------------------------CCCCceEEEecccch--HHH-HHH--HHHHHhCC
Q 022979 48 LEILARNKGISFVAIDQNRPLS------------------------DQGPFDVVLHKLSGM--EWC-KII--EDYRQKHP 98 (289)
Q Consensus 48 l~~~~~~~gi~~v~iD~~~pl~------------------------~Qgp~DvILHKltd~--~~~-~~l--~~y~~~hP 98 (289)
....+++.|+..|-+|.+-... ++..+|.|+-=+.++ .+. ..+ +...+++
T Consensus 32 ~~kalke~G~~vi~v~~np~~~~~~~~~aD~~y~~p~~~~~v~~ii~~e~~DaIlp~~gg~~~l~la~~l~~~~~le~~- 110 (1050)
T TIGR01369 32 ACKALKEEGYRVILVNSNPATIMTDPEMADKVYIEPLTPEAVEKIIEKERPDAILPTFGGQTALNLAVELEESGVLEKY- 110 (1050)
T ss_pred HHHHHHHcCCEEEEEecchhhccCChhcCCEEEECCCCHHHHHHHHHHhCCCEEEECCCChhHHHHHhhHHHHhHHHHC-
Confidence 5666788899999888874210 113456665433221 111 111 1223333
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCcee
Q 022979 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHE 177 (289)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~ 177 (289)
++.++ -++++++...||..+.+.+.++ .+.+|++..+++. ++..+. ...+.||+|+||...-| +..
T Consensus 111 Gv~~~G~~~~ai~~~~DK~~~k~~l~~~-------Gipvp~~~~v~s~-~e~~~~--~~~igyPvIVKP~~g~g---g~G 177 (1050)
T TIGR01369 111 GVEVLGTPVEAIKKAEDRELFREAMKEI-------GEPVPESEIAHSV-EEALAA--AKEIGYPVIVRPAFTLG---GTG 177 (1050)
T ss_pred CCEEECCCHHHHHHhCCHHHHHHHHHHC-------CCCCCCeeecCCH-HHHHHH--HHHhCCCeEEECCCCCC---CCC
Confidence 45444 7789999999999999998864 3668888887532 112121 23578999999985444 566
Q ss_pred eEEEeccCCCCCC-------C--CCeeEEEeeecceeEEEEEEEcc
Q 022979 178 LFLAYDRFSLSEL-------E--PPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 178 Maivf~~~gL~~L-------~--~P~VlQeFINH~gvLfKVYVvGd 214 (289)
+.++.|++.|... . .++++||||... .=|=+=|++|
T Consensus 178 v~iv~~~eeL~~~~~~~~~~s~~~~vlVEe~I~G~-~Eiev~v~rd 222 (1050)
T TIGR01369 178 GGIAYNREELKEIAERALSASPINQVLVEKSLAGW-KEIEYEVMRD 222 (1050)
T ss_pred eEEECCHHHHHHHHHHHHhcCCCCcEEEEEcccCc-eEEEEEEEEe
Confidence 7899998877532 1 479999999842 2233344443
No 42
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=96.85 E-value=0.012 Score=64.80 Aligned_cols=102 Identities=18% Similarity=0.194 Sum_probs=68.7
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCcee
Q 022979 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHE 177 (289)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~ 177 (289)
++.++ -++++++...||..+-+.++++ .+.+|++..+++ .+++.+. ...+.||+|+||....| +..
T Consensus 112 gv~l~g~~~~~i~~~~DK~~~k~~l~~~-------GIpvp~~~~v~s-~ee~~~~--~~~igyPvVVKP~~g~g---G~G 178 (1068)
T PRK12815 112 GVELLGTNIEAIQKGEDRERFRALMKEL-------GEPVPESEIVTS-VEEALAF--AEKIGFPIIVRPAYTLG---GTG 178 (1068)
T ss_pred CCEEECCCHHHHHHhcCHHHHHHHHHHc-------CcCCCCceeeCC-HHHHHHH--HHHcCCCEEEEECcCCC---CCc
Confidence 45444 5778999999999988888765 356888888852 2112122 23578999999986555 455
Q ss_pred eEEEeccCCCCCC---------CCCeeEEEeeecceeEEEEEEEcc
Q 022979 178 LFLAYDRFSLSEL---------EPPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 178 Maivf~~~gL~~L---------~~P~VlQeFINH~gvLfKVYVvGd 214 (289)
+.++.|++.|... ..++++||||+.. .=|=|=|++|
T Consensus 179 v~iv~~~eEL~~a~~~~~~~s~~~~vLVEe~I~G~-~E~sv~v~rD 223 (1068)
T PRK12815 179 GGIAENLEELEQLFKQGLQASPIHQCLLEESIAGW-KEIEYEVMRD 223 (1068)
T ss_pred eEEECCHHHHHHHHHHHHhcCCCCeEEEEEccCCC-eEEEEEEEEc
Confidence 7799998877431 1479999999753 2233445554
No 43
>PLN02735 carbamoyl-phosphate synthase
Probab=96.84 E-value=0.007 Score=66.78 Aligned_cols=115 Identities=19% Similarity=0.353 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhCC--------Ce-EEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhc
Q 022979 86 WCKIIEDYRQKHP--------EV-TILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEA 156 (289)
Q Consensus 86 ~~~~l~~y~~~hP--------~v-~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~a 156 (289)
....+.++..+++ .+ ++--++++++...||..+-+.+.++ .|.+|++..+++ .++..+. ..
T Consensus 665 la~~l~~~L~e~~~fa~~~~~gi~i~G~s~e~i~i~~DK~~~k~~l~~~-------GIp~p~~~~v~s-~eea~~~--a~ 734 (1102)
T PLN02735 665 LALPIQKYLDKNPPPSASGNGNVKIWGTSPDSIDAAEDRERFNAILNEL-------KIEQPKGGIARS-EADALAI--AK 734 (1102)
T ss_pred HHHHHHHHHHhccchhhhhcCCeEEECCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCeeEeCC-HHHHHHH--HH
Confidence 3455666655554 33 4567899999999999999988865 366788877742 1111111 23
Q ss_pred CCccceEeeeccccCCCCceeeEEEeccCCCCCC---------CCCeeEEEeeecceeEEEEEEEcc
Q 022979 157 GLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL---------EPPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 157 gl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~L---------~~P~VlQeFINH~gvLfKVYVvGd 214 (289)
.+.||+|+||...-| +..|.+|.+++.|... ..|+++|+||.+ |.=+=|-+++|
T Consensus 735 ~iGyPvvVKP~~g~g---G~G~~iV~~~eeL~~al~~a~~~~~~~~vlVEefI~~-g~Ei~V~vl~D 797 (1102)
T PLN02735 735 RIGYPVVVRPSYVLG---GRAMEIVYSDDKLKTYLETAVEVDPERPVLVDKYLSD-ATEIDVDALAD 797 (1102)
T ss_pred hcCCCeEEEeCCCCC---CCcEEEECCHHHHHHHHHHHHHhcCCCCEEEEEecCC-cEEEEEEEEEC
Confidence 689999999977444 4689999999988531 358999999964 56667777775
No 44
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=96.81 E-value=0.011 Score=57.58 Aligned_cols=108 Identities=9% Similarity=0.080 Sum_probs=72.6
Q ss_pred HHHHHHhCCCeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccc-eEeeec
Q 022979 90 IEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLP-LVAKPL 167 (289)
Q Consensus 90 l~~y~~~hP~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP-~I~Kp~ 167 (289)
+.+..+++ .+.++ -++++++...||..|.+.+.+. .|.+|++..+++ .+++.+.+ ..+.|| +|+||.
T Consensus 80 ~~~~l~~~-gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gIp~p~~~~~~~-~~~~~~~~--~~~g~P~~VvKp~ 148 (423)
T TIGR00877 80 LVDALEEA-GIPVFGPTKEAAQLEGSKAFAKDFMKRY-------GIPTAEYEVFTD-PEEALSYI--QEKGAPAIVVKAD 148 (423)
T ss_pred HHHHHHHC-CCeEECCCHHHHHHHCCHHHHHHHHHHC-------CCCCCCeEEECC-HHHHHHHH--HhcCCCeEEEEEC
Confidence 33444444 45544 6778999999999999998764 356888888852 22222222 357899 999997
Q ss_pred cccCCCCceeeEEEeccCCCCC------------CCCCeeEEEeeecceeEEEEEEEc
Q 022979 168 VVDGSAKSHELFLAYDRFSLSE------------LEPPMLLQEFVNHGGILFKIYIIG 213 (289)
Q Consensus 168 vA~Gs~~SH~Maivf~~~gL~~------------L~~P~VlQeFINH~gvLfKVYVvG 213 (289)
...|+ ..+.++.+.+.+.. -..++++||||+- .=|=|-++.
T Consensus 149 ~~~gg---~Gv~~v~~~~el~~~~~~~~~~~~g~~~~~~lvEe~i~G--~E~sv~~~~ 201 (423)
T TIGR00877 149 GLAAG---KGVIVAKTNEEAIKAVEEILEQKFGDAGERVVIEEFLDG--EEVSLLAFV 201 (423)
T ss_pred CCCCC---CCEEEECCHHHHHHHHHHHHHHhcCCCCCeEEEEECccC--ceEEEEEEE
Confidence 65554 56888888876532 1247999999983 555555553
No 45
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=96.70 E-value=0.0052 Score=59.75 Aligned_cols=127 Identities=15% Similarity=0.253 Sum_probs=89.4
Q ss_pred CceEEEecc---cchHHHHHHHHHHHhCCCeEEeCCh-hHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCC---
Q 022979 73 PFDVVLHKL---SGMEWCKIIEDYRQKHPEVTILDPP-DAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKD--- 145 (289)
Q Consensus 73 p~DvILHKl---td~~~~~~l~~y~~~hP~v~ViDP~-~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~--- 145 (289)
.+|+++-=+ .+++ -.+|.+.+.. +++.+=+- .+....+|+..+-+.+++. .|.+|++..++..
T Consensus 87 ~~D~vf~~lhG~~GEd--g~iqglle~~-giPy~Gs~~~asal~~DK~~tK~~l~~~-------GIpt~p~~~~~~~~~~ 156 (364)
T PRK14570 87 EIDVVFPIVHGRTGED--GAIQGFLKVM-DIPCVGAGILGSAISINKYFCKLLLKSF-------NIPLVPFIGFRKYDYF 156 (364)
T ss_pred CCCEEEEcCCCCCCCc--CHHHHHHHHc-CCCccCCCHHHHHHHHCHHHHHHHHHHc-------CCCCCCEEEEeccccc
Confidence 588876555 3343 3466777665 67777666 5888999999988888753 4667888777431
Q ss_pred --CCCchhHHHhcCCccceEeeeccccCCCCceeeEEEeccCCCCC-------CCCCeeEEEeeecceeEEEEEEEcce
Q 022979 146 --SLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGET 215 (289)
Q Consensus 146 --~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~-------L~~P~VlQeFINH~gvLfKVYVvGd~ 215 (289)
.++..+.+ ...+.||+|+||....| |..+.+|.+++.|.. ...++++||||. |.=|-|-|+|+.
T Consensus 157 ~~~~~~~~~~-~~~lg~PviVKP~~~Gs---S~Gv~~v~~~~el~~al~~a~~~~~~vlVEefI~--GrEi~v~Vlg~~ 229 (364)
T PRK14570 157 LDKEGIKKDI-KEVLGYPVIVKPAVLGS---SIGINVAYNENQIEKCIEEAFKYDLTVVIEKFIE--AREIECSVIGNE 229 (364)
T ss_pred cchHHHHHHH-HHhcCCCEEEEeCCCCC---CCcEEEeCCHHHHHHHHHHHHhCCCCEEEECCcC--CEEEEEEEECCC
Confidence 11111122 24689999999965333 567999999987753 346799999998 788899999984
No 46
>PLN02735 carbamoyl-phosphate synthase
Probab=96.66 E-value=0.017 Score=63.78 Aligned_cols=152 Identities=16% Similarity=0.219 Sum_probs=94.0
Q ss_pred HHHHHHhcCcEEEEccCCCCCC------------------------CCCCceEEEecccch---HHHHHHH--HHHHhCC
Q 022979 48 LEILARNKGISFVAIDQNRPLS------------------------DQGPFDVVLHKLSGM---EWCKIIE--DYRQKHP 98 (289)
Q Consensus 48 l~~~~~~~gi~~v~iD~~~pl~------------------------~Qgp~DvILHKltd~---~~~~~l~--~y~~~hP 98 (289)
+...+++.|+..+-+|.+-... .+..+|.|+-=+-++ .....+. ...+++
T Consensus 49 ~~kaLke~G~~Vi~vd~np~t~~~~~~~aD~~yi~p~~~e~v~~ii~~e~~D~Iip~~gg~~gl~la~~l~~~g~Le~~- 127 (1102)
T PLN02735 49 ACKALKEEGYEVVLINSNPATIMTDPETADRTYIAPMTPELVEQVIAKERPDALLPTMGGQTALNLAVALAESGILEKY- 127 (1102)
T ss_pred HHHHHHHcCCEEEEEeCCcccccCChhhCcEEEeCCCCHHHHHHHHHHhCCCEEEECCCchhhHHHHHHHhhhCHHHHC-
Confidence 6667789999999999864211 012455555433222 1111111 122333
Q ss_pred Ce-EEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCc-cceEeeeccccCCCCce
Q 022979 99 EV-TILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLK-LPLVAKPLVVDGSAKSH 176 (289)
Q Consensus 99 ~v-~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~-fP~I~Kp~vA~Gs~~SH 176 (289)
++ ++--++++++...||..+-+.+++. .+.+|++..+++. ++..+.. ..+. ||+|+||....|+ .
T Consensus 128 GI~~~G~~~~ai~~~~DK~~~k~~l~~~-------GIpvp~~~~v~s~-eea~~~~--~~iG~yPvVVKP~~~~GG---~ 194 (1102)
T PLN02735 128 GVELIGAKLDAIKKAEDRELFKQAMEKI-------GLKTPPSGIATTL-DECFEIA--EDIGEFPLIIRPAFTLGG---T 194 (1102)
T ss_pred CCEEECCCHHHHHHhcCHHHHHHHHHHC-------CCCCCCeeEeCCH-HHHHHHH--HHhCCCCEEEEeCCCCCC---C
Confidence 33 2335778888999999888888754 4678888888532 1121222 2454 9999999886665 3
Q ss_pred eeEEEeccCCCCC---------CCCCeeEEEeeecceeEEEEEEEcc
Q 022979 177 ELFLAYDRFSLSE---------LEPPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 177 ~Maivf~~~gL~~---------L~~P~VlQeFINH~gvLfKVYVvGd 214 (289)
.+.++.|++.|.. ...++++||||.. ..=|=|=|++|
T Consensus 195 Gv~iv~n~eEL~~a~~~a~~~s~~~~VLVEe~I~G-~kE~ev~Vl~D 240 (1102)
T PLN02735 195 GGGIAYNKEEFETICKAGLAASITSQVLVEKSLLG-WKEYELEVMRD 240 (1102)
T ss_pred ceEEECCHHHHHHHHHHHHhcCCCCeEEEEEecCC-CeEEEEEEEEc
Confidence 6779999998752 2357999999963 34455666665
No 47
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=96.60 E-value=0.014 Score=61.63 Aligned_cols=187 Identities=21% Similarity=0.289 Sum_probs=118.2
Q ss_pred CccEEEEEEechhhhhhccchH-HHHHHHhcCcEEE----EccCCCCCCCCCCceEEEecccchHHHHHHHHHHHhCCCe
Q 022979 26 PERLVVGYALTSKKKKSFLQPK-LEILARNKGISFV----AIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEV 100 (289)
Q Consensus 26 ~~~~~VGy~l~~kK~~~~~~~~-l~~~~~~~gi~~v----~iD~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~~hP~v 100 (289)
....+||.|.-+||.++==-.. +-.++.-.=|+.| .+=++.|.+.=--.||+|-=-+.--=-+..++|.+.. +-
T Consensus 38 ~r~i~vGICaM~kK~~SKPm~~il~rli~f~~~~~vvf~e~viL~EpVENWP~CdcLIsFhSsGFPLdKAiaY~kLR-nP 116 (1018)
T KOG1057|consen 38 ERQIVVGICAMAKKSKSKPMKEILERLILFKYITVVVFEEEVILREPVENWPLCDCLISFHSKGFPLDKAVAYAKLR-NP 116 (1018)
T ss_pred ccceEEEEeechhhhccChHHHHHHHHHhcceeEEEEeccceeeccccccCcccceEEEeccCCCChHHHHHHHHhc-CC
Confidence 3456999998888865432111 3333332333333 2224455555556677665443321234578899854 33
Q ss_pred EEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCC--chhHH------HhcC--CccceEeeecccc
Q 022979 101 TILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLS--IPDQV------FEAG--LKLPLVAKPLVVD 170 (289)
Q Consensus 101 ~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~--~~~~l------~~ag--l~fP~I~Kp~vA~ 170 (289)
.||.-++-++.|.||...|+.|+.- .|.+|++..++.+..+ .-..+ .-.| ..=|+|-||+-|
T Consensus 117 FviNdL~mQyll~DRR~Vy~iLe~~-------gI~~PRya~~nr~~pn~~~~~lie~eD~vEVnGevf~KPFVEKPVs~- 188 (1018)
T KOG1057|consen 117 FVINDLDMQYLLQDRREVYSILEAE-------GIPLPRYAILNRDPPNPKLCNLIEGEDHVEVNGEVFQKPFVEKPVSA- 188 (1018)
T ss_pred eeeccccHHHHHHHHHHHHHHHHHc-------CCCCceeEeecCCCCChHHhhhhcCCCeEEEcceeccCCcccCCCCc-
Confidence 5677788899999999999999743 5678888877644321 11111 1123 344999999864
Q ss_pred CCCCceeeEEEeccC---CCCCC-------------------CCCeeEEEeeecceeEEEEEEEcceEE-EEEecCC
Q 022979 171 GSAKSHELFLAYDRF---SLSEL-------------------EPPMLLQEFVNHGGILFKIYIIGETIK-VVRRFSL 224 (289)
Q Consensus 171 Gs~~SH~Maivf~~~---gL~~L-------------------~~P~VlQeFINH~gvLfKVYVvGd~v~-vv~R~SL 224 (289)
+-|..+|-|--. |-..| .--.+.-||.+-+|.=-|||-||-.+. .-.|+|.
T Consensus 189 ---EDHNIYIYYPsSaGGGsqrLFRKIgnRSS~y~P~~~vRkeGSyIYEeFMptdgtDVKvYTVGp~YaHAEaRKSP 262 (1018)
T KOG1057|consen 189 ---EDHNIYIYYPSSAGGGSQRLFRKIGNRSSEYHPDSSVRKEGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSP 262 (1018)
T ss_pred ---ccccEEEEecCCCCccHHHHHHHhcccccccCCccccccccceehhhhcCCCCccceEEeeCcchhhhhhccCc
Confidence 569999988655 22111 124799999999999999999996554 4667775
No 48
>PRK06524 biotin carboxylase-like protein; Validated
Probab=96.52 E-value=0.0079 Score=60.99 Aligned_cols=114 Identities=11% Similarity=0.136 Sum_probs=75.5
Q ss_pred HHHHHHhCCCeEE-eCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEc-CCCCCchhHHHhcCCccceEeeec
Q 022979 90 IEDYRQKHPEVTI-LDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVIT-KDSLSIPDQVFEAGLKLPLVAKPL 167 (289)
Q Consensus 90 l~~y~~~hP~v~V-iDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~-~~~~~~~~~l~~agl~fP~I~Kp~ 167 (289)
+|...+.. .+.+ .=+..++...+||..+-+.++++ .|.+|++..+. .+.+++......+++.||+++||.
T Consensus 118 iQ~lLE~l-GIpy~gP~a~asai~mDK~~tK~l~~~a-------GIPtpp~~~~~~~~~eel~~~~~~~~IGyPvVVKP~ 189 (493)
T PRK06524 118 TEALARQA-GLEVMHPPAELRHRLDSKIVTTRLANEA-------GVPSVPHVLGRVDSYDELSALAHGAGLGDDLVVQTP 189 (493)
T ss_pred HHHHHHHC-CCeEECcCHHHHHHhCCHHHHHHHHHHc-------CCCCCCcccccCCCHHHHHHHHHhccCCCcEEEEEC
Confidence 44455544 3444 55667788899999888877643 46678877652 122222222233359999999999
Q ss_pred cccCCCCceeeEEEeccCCCCCC-----C-CCeeEEEeeecceeEEEEEEEcc
Q 022979 168 VVDGSAKSHELFLAYDRFSLSEL-----E-PPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 168 vA~Gs~~SH~Maivf~~~gL~~L-----~-~P~VlQeFINH~gvLfKVYVvGd 214 (289)
. |+ .|+.+.+|.+++.|... + ..+++|+||++.-+-.=+++-++
T Consensus 190 ~--GG-SS~GV~~Vkn~eELe~a~~~~~~~~~viVEe~I~GrEitVev~vd~d 239 (493)
T PRK06524 190 Y--GD-SGSTTFFVRGQRDWDKYAGGIVGQPEIKVMKRIRNVEVCIEACVTRH 239 (493)
T ss_pred C--CC-CCcCEEEeCCHHHHHHHHHHhcCCCCEEEEeccCcEEEEEEEEEeCC
Confidence 4 44 47999999999987632 2 45899999987665555666654
No 49
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=96.41 E-value=0.0084 Score=58.90 Aligned_cols=103 Identities=12% Similarity=0.194 Sum_probs=67.2
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEc-CCCCCchhHHHhcCCccceEeeeccccCCCCce
Q 022979 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVIT-KDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH 176 (289)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~-~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH 176 (289)
++.++ -++++++...|+..|.+.+.+.. |.+|++.... .+.+++.+.. ..+.||+|+||....| |+
T Consensus 99 g~~~~g~~~~~~~~~~dK~~~k~~l~~~g-------Ip~p~~~~~~~~~~~e~~~~~--~~~~~P~VvKP~~g~g---s~ 166 (450)
T PRK06111 99 GIVFIGPSADIIAKMGSKIEARRAMQAAG-------VPVVPGITTNLEDAEEAIAIA--RQIGYPVMLKASAGGG---GI 166 (450)
T ss_pred CCeEECCCHHHHHHhCCHHHHHHHHHHCC-------CCCCCCcCcCcCCHHHHHHHH--HHhCCCEEEEeCCCCC---Cc
Confidence 34444 55888999999999999988643 4466552211 1222222222 3578999999977554 57
Q ss_pred eeEEEeccCCCCC-------------CCCCeeEEEeeecceeEEEEEEEcc
Q 022979 177 ELFLAYDRFSLSE-------------LEPPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 177 ~Maivf~~~gL~~-------------L~~P~VlQeFINH~gvLfKVYVvGd 214 (289)
.+.++.+.+.|.. -..++++||||... .-+-+.++++
T Consensus 167 Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~g~-~e~~v~v~~~ 216 (450)
T PRK06111 167 GMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIEDP-RHIEIQLLAD 216 (450)
T ss_pred eEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccCCC-cEEEEEEEEc
Confidence 8999999988752 13579999999843 3355545543
No 50
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=96.36 E-value=0.0085 Score=59.06 Aligned_cols=99 Identities=11% Similarity=0.211 Sum_probs=67.1
Q ss_pred EeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceE--EEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeE
Q 022979 102 ILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELF 179 (289)
Q Consensus 102 ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Ma 179 (289)
+--++++++.+.|+..|.+.+++.. |.+|++. .++ +.+++.+. ...+.||+|+||....| |..+.
T Consensus 103 ~g~~~~~~~~~~DK~~~r~~l~~~g-------Ip~pp~~~~~v~-~~~~~~~~--~~~~g~PvvvKP~~g~g---s~Gv~ 169 (451)
T PRK08591 103 IGPSAETIRLMGDKVTAKATMKKAG-------VPVVPGSDGPVD-DEEEALAI--AKEIGYPVIIKATAGGG---GRGMR 169 (451)
T ss_pred ECcCHHHHHHhcCHHHHHHHHHHcC-------CCCCCCcccccC-CHHHHHHH--HHHcCCCEEEEECCCCC---CceEE
Confidence 3468899999999999999988653 4455542 332 21112122 23678999999987654 57888
Q ss_pred EEeccCCCCCC-------------CCCeeEEEeeecceeEEEEEEEcc
Q 022979 180 LAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 180 ivf~~~gL~~L-------------~~P~VlQeFINH~gvLfKVYVvGd 214 (289)
++.+++.|.+. .+++++||||.. +.-|=|-|+||
T Consensus 170 iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g-~~e~~v~v~~d 216 (451)
T PRK08591 170 VVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLEN-PRHIEIQVLAD 216 (451)
T ss_pred EECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCC-CcEEEEEEEEc
Confidence 99999877521 356999999974 44466656654
No 51
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=96.32 E-value=0.031 Score=62.01 Aligned_cols=104 Identities=9% Similarity=0.178 Sum_probs=69.6
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEE-EcCCCCCchhHHHhcCCccceEeeeccccCCCCce
Q 022979 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMV-ITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH 176 (289)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~-i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH 176 (289)
.+.++ -++++++.+.|+..+.+.+.+.. |.+|++.. .-.+.+++.+. ...+.||+|+||....| +.
T Consensus 99 Gi~fiGps~e~i~~~~DK~~ar~la~~~G-------VPvpp~t~~~v~~~eea~~~--ae~iGyPvIVKP~~GGG---Gr 166 (1143)
T TIGR01235 99 GIIFIGPKAEVMDQLGDKVAARNLAIKAG-------VPVVPGTDGPPETMEEVLDF--AAAIGYPVIIKASWGGG---GR 166 (1143)
T ss_pred CCcccCCCHHHHHHhcCHHHHHHHHHHcC-------CCCCCCcccCcCCHHHHHHH--HHHcCCCEEEEECCCCC---CC
Confidence 45444 55889999999999888887643 44555432 11122222222 23578999999966554 57
Q ss_pred eeEEEeccCCCCCC-------------CCCeeEEEeeecceeEEEEEEEcce
Q 022979 177 ELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET 215 (289)
Q Consensus 177 ~Maivf~~~gL~~L-------------~~P~VlQeFINH~gvLfKVYVvGd~ 215 (289)
.|.+|.+++.|... ..++++|+||.. +.=+-|-|+||.
T Consensus 167 G~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~g-~reIeVqVlgD~ 217 (1143)
T TIGR01235 167 GMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIER-PRHIEVQLLGDK 217 (1143)
T ss_pred ccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCC-CeEEEEEEEEeC
Confidence 89999998877521 357999999964 455778888875
No 52
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=96.22 E-value=0.011 Score=58.54 Aligned_cols=102 Identities=11% Similarity=0.197 Sum_probs=67.3
Q ss_pred CeE-EeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceE--EEcCCCCCchhHHHhcCCccceEeeeccccCCCCc
Q 022979 99 EVT-ILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 175 (289)
Q Consensus 99 ~v~-ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~S 175 (289)
++. +--++++++.+.|+..+.+.+.+.. |.+|++. .++ +.+++.+.. ..+.||+|+||....| |
T Consensus 99 Gi~~~g~~~~~~~~~~DK~~~r~~l~~~g-------ip~pp~~~~~~~-~~~e~~~~~--~~ig~PvvvKP~~g~g---s 165 (449)
T TIGR00514 99 GFTFIGPSAESIRLMGDKVSAIETMKKAG-------VPCVPGSDGLVE-DEEENVRIA--KRIGYPVIIKATAGGG---G 165 (449)
T ss_pred CCcEECcCHHHHHHhCCHHHHHHHHHHCC-------CCCCCCcccCcC-CHHHHHHHH--HHhCCCEEEEeCCCCC---C
Confidence 343 3467899999999999999987643 4455543 222 222121222 3578999999988665 4
Q ss_pred eeeEEEeccCCCCCC-------------CCCeeEEEeeecceeEEEEEEEcc
Q 022979 176 HELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 176 H~Maivf~~~gL~~L-------------~~P~VlQeFINH~gvLfKVYVvGd 214 (289)
..+.++.+++.|.+. ..++++||||.. +.-|=|-|++|
T Consensus 166 ~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g-~~e~~v~v~~d 216 (449)
T TIGR00514 166 RGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIEN-PRHVEIQVLAD 216 (449)
T ss_pred CccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCC-CeEEEEEEEEc
Confidence 678899999877431 357999999964 33345555554
No 53
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=96.01 E-value=0.02 Score=60.77 Aligned_cols=88 Identities=15% Similarity=0.279 Sum_probs=60.2
Q ss_pred ceecCceEEEcCCCCCchhHHHhcCC-ccceEeeeccccCCCCceeeEEEec---cCCCC-------CCCCCeeEEEeee
Q 022979 133 KVRVPRQMVITKDSLSIPDQVFEAGL-KLPLVAKPLVVDGSAKSHELFLAYD---RFSLS-------ELEPPMLLQEFVN 201 (289)
Q Consensus 133 ~i~~P~~v~i~~~~~~~~~~l~~agl-~fP~I~Kp~vA~Gs~~SH~Maivf~---~~gL~-------~L~~P~VlQeFIN 201 (289)
.|.+|.+.++....+ ..... ..+ .+|+|+||.-..++. ...++.+ .+.+. .-...+++|+||.
T Consensus 487 GIPVP~g~~~~~~~~-a~~~~--~~~~g~PVVVKP~~g~~G~---GVsi~~~~~~~eel~~Al~~A~~~~~~VLVEefI~ 560 (737)
T TIGR01435 487 GFRVPFGDEFSSQAL-ALEAF--SLFENKAIVVKPKSTNYGL---GITIFKNGFTLEDFQEALNIAFSEDSSVIIEEFLP 560 (737)
T ss_pred CcCCCCEEEECCHHH-HHHHH--HHhcCCCEEEeeCCCCCcC---CeEEecCcCCHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 588999998853211 11111 123 589999999866543 4445555 23332 1234699999996
Q ss_pred cceeEEEEEEEcceEEEEEecCCCCCc
Q 022979 202 HGGILFKIYIIGETIKVVRRFSLPNVS 228 (289)
Q Consensus 202 H~gvLfKVYVvGd~v~vv~R~SLpn~~ 228 (289)
|.=|-|+|||+++..+.+.--+|+.
T Consensus 561 --G~EyRv~VIg~kvvaa~~R~Pa~Vi 585 (737)
T TIGR01435 561 --GTEYRFFVLNDKVEAVLLRVPANVT 585 (737)
T ss_pred --CCEEEEEEECCeEEEEEEECCCCEE
Confidence 8999999999999888887778874
No 54
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=95.99 E-value=0.013 Score=59.25 Aligned_cols=103 Identities=13% Similarity=0.243 Sum_probs=70.6
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEE--EcCCCCCchhHHHhcCCccceEeeeccccCCCCc
Q 022979 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMV--ITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 175 (289)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~--i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~S 175 (289)
++.++ -++++++.+.|+..+-+.+++.. |.+|++.. ++ +.+++.+. ...+.||+|+||....| +
T Consensus 99 gi~~iGps~~~i~~~~DK~~~k~~l~~~G-------Vpv~p~~~~~v~-~~~e~~~~--a~~igyPvvIKp~~GgG---G 165 (499)
T PRK08654 99 GIVFIGPSSDVIEAMGSKINAKKLMKKAG-------VPVLPGTEEGIE-DIEEAKEI--AEEIGYPVIIKASAGGG---G 165 (499)
T ss_pred CCcEECCCHHHHHHhCCHHHHHHHHHHcC-------cCCCCCcCcCCC-CHHHHHHH--HHHhCCCEEEEeCCCCC---C
Confidence 46555 46899999999999999887643 44444432 22 22222222 23578999999977555 5
Q ss_pred eeeEEEeccCCCCCC-------------CCCeeEEEeeecceeEEEEEEEcce
Q 022979 176 HELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET 215 (289)
Q Consensus 176 H~Maivf~~~gL~~L-------------~~P~VlQeFINH~gvLfKVYVvGd~ 215 (289)
..|.++.+++.|.+. ..++++|+||.. +.-+-|-|+||.
T Consensus 166 ~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~~-~r~ieVqvl~d~ 217 (499)
T PRK08654 166 IGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEK-PRHIEIQILADK 217 (499)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCC-CcEEEEEEEEcC
Confidence 799999999987421 357999999975 344777777764
No 55
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=95.97 E-value=0.042 Score=54.99 Aligned_cols=142 Identities=13% Similarity=0.210 Sum_probs=86.1
Q ss_pred hhccc-hHHHHHHHhcCcEEEEccCCCCCCCCCCceEEEecccchHHHHHHHHHHHhCCCeEEe-CChhHHhhhccHHHH
Q 022979 41 KSFLQ-PKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSM 118 (289)
Q Consensus 41 ~~~~~-~~l~~~~~~~gi~~v~iD~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~Vi-DP~~~i~~l~dR~~~ 118 (289)
.++.. ..+.++|++.|++.|--=- | .++... .+.+..+++ ++.++ -++++++.+.|+..+
T Consensus 57 ~~y~d~~~i~~~a~~~~~D~I~pg~-------g-------~lse~~---~~a~~~e~~-Gi~~igps~~~i~~~~DK~~~ 118 (472)
T PRK07178 57 AGYLNPRRLVNLAVETGCDALHPGY-------G-------FLSENA---ELAEICAER-GIKFIGPSAEVIRRMGDKTEA 118 (472)
T ss_pred hhhcCHHHHHHHHHHHCCCEEEeCC-------C-------CcccCH---HHHHHHHHc-CCCccCCCHHHHHHhcCHHHH
Confidence 44443 3588889888876643211 0 111211 133444444 45544 568999999999999
Q ss_pred HHHHhhcccCCCCCceecCceEE--EcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEeccCCCCC-------
Q 022979 119 LQDVADLNLSDCNGKVRVPRQMV--ITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE------- 189 (289)
Q Consensus 119 l~~l~~l~~~~~~~~i~~P~~v~--i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~------- 189 (289)
-+.+.+.. |.+|++.. ++ +.++..+. ...+.||+|+||....| +..|.++.+++.|..
T Consensus 119 r~~l~~~G-------Ip~pp~~~~~~~-~~~e~~~~--~~~igyPvvvKp~~ggG---g~Gv~~v~~~~eL~~a~~~~~~ 185 (472)
T PRK07178 119 RRAMIKAG-------VPVTPGSEGNLA-DLDEALAE--AERIGYPVMLKATSGGG---GRGIRRCNSREELEQNFPRVIS 185 (472)
T ss_pred HHHHHHCC-------CCCCCCcCcCCC-CHHHHHHH--HHHcCCcEEEEeCCCCC---CCCceEeCCHHHHHHHHHHHHH
Confidence 99988643 44544432 22 21111111 24678999999977555 578999999998853
Q ss_pred -----C-CCCeeEEEeeecceeEEEEEEEcc
Q 022979 190 -----L-EPPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 190 -----L-~~P~VlQeFINH~gvLfKVYVvGd 214 (289)
. ..++++|+||..+ .=+=|-|+||
T Consensus 186 ~~~~~~~~~~v~iE~~i~~~-~eiev~v~~d 215 (472)
T PRK07178 186 EATKAFGSAEVFLEKCIVNP-KHIEVQILAD 215 (472)
T ss_pred HHHHhcCCCCEEEEEcCCCC-eEEEEEEEEE
Confidence 1 3579999999643 3344555554
No 56
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=95.90 E-value=0.023 Score=57.00 Aligned_cols=103 Identities=10% Similarity=0.166 Sum_probs=67.9
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCc-eEEEc-CCCCCchhHHHhcCCccceEeeeccccCCCCc
Q 022979 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPR-QMVIT-KDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 175 (289)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~-~v~i~-~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~S 175 (289)
++.++ -++++++.+.|+..+.+.+.+.. |.+|+ +..+. .+.+++.+. ...+.||+|+||....| +
T Consensus 98 Gi~~iGps~~~i~~~~DK~~~k~~l~~~g-------Ipvpp~~~~~~~~~~~~~~~~--~~~igyPvvvKP~~ggG---g 165 (478)
T PRK08463 98 GIIFIGPKSEVIRKMGNKNIARYLMKKNG-------IPIVPGTEKLNSESMEEIKIF--ARKIGYPVILKASGGGG---G 165 (478)
T ss_pred CCceecCCHHHHHhhCcHHHHHHHHHHcC-------CCCCCCccccCCCCHHHHHHH--HHHhCCCEEEEeCCCCC---C
Confidence 45555 55899999999999999987653 44544 33222 121112122 23678999999987554 5
Q ss_pred eeeEEEeccCCCCCC-------------CCCeeEEEeeecceeEEEEEEEcc
Q 022979 176 HELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 176 H~Maivf~~~gL~~L-------------~~P~VlQeFINH~gvLfKVYVvGd 214 (289)
..|.++.+++.|... +.++++|+||..+ .-+-+-|+||
T Consensus 166 ~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~~~-~~iev~v~~d 216 (478)
T PRK08463 166 RGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVNP-RHIEFQILGD 216 (478)
T ss_pred CceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCC-eEEEEEEEEc
Confidence 789999999987431 3579999999753 2234556655
No 57
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=95.87 E-value=0.024 Score=56.72 Aligned_cols=100 Identities=15% Similarity=0.239 Sum_probs=68.4
Q ss_pred EeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceE--EEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeE
Q 022979 102 ILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELF 179 (289)
Q Consensus 102 ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Ma 179 (289)
+--++++++.+.|+..+-+.+.+.. |.+|++. .+. +.+++.+. ...+.||+|+||....| +..|.
T Consensus 106 igps~~ai~~~~DK~~~r~~l~~~G-------Ip~~p~~~~~v~-~~~e~~~~--~~~igyPvvvKp~~ggg---g~Gv~ 172 (467)
T PRK12833 106 VGPDAQTIRTMGDKARARRTARRAG-------VPTVPGSDGVVA-SLDAALEV--AARIGYPLMIKAAAGGG---GRGIR 172 (467)
T ss_pred cCCCHHHHHHhcCHHHHHHHHHHcC-------CCCCCCcCcCcC-CHHHHHHH--HHHhCCCEEEEECCCCC---CCeEE
Confidence 4456789999999999999887653 4455443 332 22222222 23578999999977554 57899
Q ss_pred EEeccCCCCC------------C-CCCeeEEEeeecceeEEEEEEEcce
Q 022979 180 LAYDRFSLSE------------L-EPPMLLQEFVNHGGILFKIYIIGET 215 (289)
Q Consensus 180 ivf~~~gL~~------------L-~~P~VlQeFINH~gvLfKVYVvGd~ 215 (289)
++.+++.|.. . ..++++|+||..+ .=+=|-|+||.
T Consensus 173 ~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~~-~ei~v~v~~dg 220 (467)
T PRK12833 173 VAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIARA-RHIEVQILGDG 220 (467)
T ss_pred EECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCC-EEEEEEEEeCC
Confidence 9999988753 1 4579999999863 55556667763
No 58
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=95.82 E-value=0.082 Score=52.50 Aligned_cols=137 Identities=12% Similarity=0.176 Sum_probs=85.7
Q ss_pred cchHHHHHHHhcCcEEEEccCCCCCCCCCCceEEEecccchHHHHHHHHHHHhCCCeEEeCChh-HHhhhccHHHHHHHH
Q 022979 44 LQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPD-AIKHLHNRQSMLQDV 122 (289)
Q Consensus 44 ~~~~l~~~~~~~gi~~v~iD~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~ViDP~~-~i~~l~dR~~~l~~l 122 (289)
...++.++|++.++++|-+..+.+ ..+-+-+..++. .+.++-|-. +.+...||..+-+.+
T Consensus 56 d~~~l~~~a~~~~iD~Vv~g~E~~------------------l~~glad~~~~~-Gip~~Gp~~~aa~le~dK~~~K~~l 116 (426)
T PRK13789 56 DKSSVQSFLKSNPFDLIVVGPEDP------------------LVAGFADWAAEL-GIPCFGPDSYCAQVEGSKHFAKSLM 116 (426)
T ss_pred CHHHHHHHHHHcCCCEEEECCchH------------------HHHHHHHHHHHc-CCCcCCCHHHHHHHHcCHHHHHHHH
Confidence 444577788888877777644333 222233333332 466666643 556667888888888
Q ss_pred hhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEeccCCCCC----C--------
Q 022979 123 ADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE----L-------- 190 (289)
Q Consensus 123 ~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~----L-------- 190 (289)
.+. .|.+|+|..++ +.++..+.+ ..+.||+|+||.- .+.+..+.++.+.+.+.+ +
T Consensus 117 ~~~-------gIpt~~~~~~~-~~~ea~~~~--~~~~~PvVVKp~~---~~~gkGV~vv~~~eel~~a~~~~~~~~~~g~ 183 (426)
T PRK13789 117 KEA-------KIPTASYKTFT-EYSSSLSYL--ESEMLPIVIKADG---LAAGKGVTVATEKKMAKRALKEIFKDKKFGQ 183 (426)
T ss_pred HHc-------CCCCCCeEeeC-CHHHHHHHH--HhcCCCEEEEeCC---CCCCCcEEEECCHHHHHHHHHHHHhhccccC
Confidence 754 36678887774 222222222 2578999999974 345678999999886532 1
Q ss_pred -CCCeeEEEeeecceeEEEEEEEcc
Q 022979 191 -EPPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 191 -~~P~VlQeFINH~gvLfKVYVvGd 214 (289)
...+|+|||+.- .=|=|.+++|
T Consensus 184 ~~~~vlIEEfl~G--~E~Sv~~~~d 206 (426)
T PRK13789 184 SGNQVVIEEFMEG--QEASIFAISD 206 (426)
T ss_pred CCCeEEEEECcCC--eEEEEEEEEC
Confidence 136999999973 5555666554
No 59
>PLN02257 phosphoribosylamine--glycine ligase
Probab=95.79 E-value=0.092 Score=52.33 Aligned_cols=125 Identities=15% Similarity=0.189 Sum_probs=82.7
Q ss_pred hHHHHHHHhcCcEEEEccCCCCCCCCCCceEEEecccchHHHHHHHHHHHhCCCeEEe-CChhHHhhhccHHHHHHHHhh
Q 022979 46 PKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVAD 124 (289)
Q Consensus 46 ~~l~~~~~~~gi~~v~iD~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~Vi-DP~~~i~~l~dR~~~l~~l~~ 124 (289)
..+.++|++.++++|-+..+.|+ ...+.++.+++ .+.++ -+.++++...||..+-+.+.+
T Consensus 52 ~~l~~~a~~~~id~vvvg~E~~l------------------v~~~~d~l~~~-Gi~~~Gps~~aa~l~~dK~~~K~~l~~ 112 (434)
T PLN02257 52 AAVISFCRKWGVGLVVVGPEAPL------------------VAGLADDLVKA-GIPTFGPSAEAAALEGSKNFMKDLCDK 112 (434)
T ss_pred HHHHHHHHHcCCCEEEECCchHH------------------HHHHHHHHHHC-CCCEECChHHHHHHHcCHHHHHHHHHH
Confidence 35778888888887766654332 22344444443 45555 556788888999998888875
Q ss_pred cccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEeccCCCCC-------------CC
Q 022979 125 LNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------------LE 191 (289)
Q Consensus 125 l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~-------------L~ 191 (289)
. .|.+|++..+++ .++..+.+ ..+.||+|+||.-. ..+..+.++.+.+.+.+ ..
T Consensus 113 ~-------GIptp~~~~~~~-~~e~~~~~--~~~g~PvVVKp~~~---~~GkGV~iv~~~~el~~a~~~~~~~~~fg~~~ 179 (434)
T PLN02257 113 Y-------KIPTAKYETFTD-PAAAKKYI--KEQGAPIVVKADGL---AAGKGVVVAMTLEEAYEAVDSMLVKGAFGSAG 179 (434)
T ss_pred c-------CCCCCCeEEeCC-HHHHHHHH--HHcCCCEEEEcCCC---CCCCCEEEECCHHHHHHHHHHHHhhhhccCCC
Confidence 4 466788887742 22222222 35789999999843 34578999999876531 13
Q ss_pred CCeeEEEeeec
Q 022979 192 PPMLLQEFVNH 202 (289)
Q Consensus 192 ~P~VlQeFINH 202 (289)
.++++||||.-
T Consensus 180 ~~vlIEefi~G 190 (434)
T PLN02257 180 SEVVVEEFLDG 190 (434)
T ss_pred CeEEEEECCCC
Confidence 57999999973
No 60
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.59 E-value=0.12 Score=55.27 Aligned_cols=129 Identities=14% Similarity=0.123 Sum_probs=87.4
Q ss_pred CceEEEecccc---hHHHHHHHHHHHhCCCeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCC--
Q 022979 73 PFDVVLHKLSG---MEWCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDS-- 146 (289)
Q Consensus 73 p~DvILHKltd---~~~~~~l~~y~~~hP~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~-- 146 (289)
.+|+++-=+.+ ++ -.+|.+.+.. +++.+ -+..+....+|+..+-+.+++. .|.+|++..++...
T Consensus 526 ~~d~vf~~lhG~~ged--g~iq~~le~~-gipy~Gs~~~asal~~DK~~~K~~l~~~-------GIpt~~~~~~~~~~~~ 595 (809)
T PRK14573 526 KVDVVLPILHGPFGED--GTMQGFLEII-GKPYTGPSLAFSAIAMDKVLTKRFASDV-------GVPVVPYQPLTLAGWK 595 (809)
T ss_pred cCCEEEEcCCCCCCCC--hHHHHHHHHc-CCCeeCCCHHHHHHHcCHHHHHHHHHHC-------CCCCCCEEEEechhcc
Confidence 46776554433 33 2466666654 35554 3667788889999888888753 47789998885311
Q ss_pred CCchhHH--HhcCCccceEeeeccccCCCCceeeEEEeccCCCCC-------CCCCeeEEEeeecceeEEEEEEEcce
Q 022979 147 LSIPDQV--FEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGET 215 (289)
Q Consensus 147 ~~~~~~l--~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~-------L~~P~VlQeFINH~gvLfKVYVvGd~ 215 (289)
.+....+ ....+.||+|+||.-..| |-.+.+|.+++.|.+ ...+++++|||. +|.=|=|-|+|+.
T Consensus 596 ~~~~~~~~~~~~~lg~P~iVKP~~~Gs---S~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~i~-~grEi~v~vl~~~ 669 (809)
T PRK14573 596 REPELCLAHIVEAFSFPMFVKTAHLGS---SIGVFEVHNVEELRDKISEAFLYDTDVFVEESRL-GSREIEVSCLGDG 669 (809)
T ss_pred cChHHHHHHHHHhcCCCEEEeeCCCCC---CCCEEEECCHHHHHHHHHHHHhcCCcEEEEeccC-CCEEEEEEEEeCC
Confidence 1111111 134789999999988554 467889999998752 356899999986 5677888899885
No 61
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=95.38 E-value=0.17 Score=50.42 Aligned_cols=141 Identities=9% Similarity=0.101 Sum_probs=83.0
Q ss_pred hHHHHHHHhcCcEEEEccCCCCCCCCCCceEEEecccchHHHHHHHHHHHhCCCeEEe-CChhHHhhhccHHHHHHHHhh
Q 022979 46 PKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVAD 124 (289)
Q Consensus 46 ~~l~~~~~~~gi~~v~iD~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~Vi-DP~~~i~~l~dR~~~l~~l~~ 124 (289)
+.+.++|++.++++|-.-.+.+| ......++.+. .+.++ .+.++++...|+.-|.+.+.+
T Consensus 55 e~l~~~~~~~~id~Vi~~~d~~l-----------------~~~~~~~l~~~--Gi~v~gps~~~a~~e~dK~~~k~~l~~ 115 (435)
T PRK06395 55 DLIEDFALKNNVDIVFVGPDPVL-----------------ATPLVNNLLKR--GIKVASPTMEAAMIETSKMFMRYLMER 115 (435)
T ss_pred HHHHHHHHHhCCCEEEECCChHH-----------------HHHHHHHHHHC--CCcEECCCHHHHHHhhCHHHHHHHHHH
Confidence 45777888888776655443332 11122333333 46665 778899999999999998875
Q ss_pred cccCCCCCceecC-ceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEecc-CCCC----------CCCC
Q 022979 125 LNLSDCNGKVRVP-RQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDR-FSLS----------ELEP 192 (289)
Q Consensus 125 l~~~~~~~~i~~P-~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~-~gL~----------~L~~ 192 (289)
. .|.+| .|....++ ++..... ..+.||+|+||.-..|+ -.|.++.+. +.+. +-..
T Consensus 116 ~-------gIptp~~~~~~~~~-~e~~~~~--~~~~~PvVVKP~~~sgg---kGV~v~~~~~~~~~ea~~~~~~~~~~~~ 182 (435)
T PRK06395 116 H-------NIPGNINFNACFSE-KDAARDY--ITSMKDVAVKPIGLTGG---KGVKVTGEQLNSVDEAIRYAIEILDRDG 182 (435)
T ss_pred C-------CcCCCcccceeCCh-HHHHHHH--HhhCCCEEEEeCCCCCC---CCeEEecCchhhHHHHHHHHHHHhCCCC
Confidence 3 35565 44344222 1111211 24589999999776665 467777542 1221 1235
Q ss_pred CeeEEEeeecceeEEEEEEEcceEEE
Q 022979 193 PMLLQEFVNHGGILFKIYIIGETIKV 218 (289)
Q Consensus 193 P~VlQeFINH~gvLfKVYVvGd~v~v 218 (289)
++|+|||+.---+=.=+|+=|+.+.+
T Consensus 183 ~viIEEfl~G~E~Svd~~~dg~~~~~ 208 (435)
T PRK06395 183 VVLIEKKMTGEEFSLQAFSDGKHLSF 208 (435)
T ss_pred cEEEEeecCCceEEEEEEEcCCeEEE
Confidence 79999999633333344556666644
No 62
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=95.08 E-value=0.11 Score=58.10 Aligned_cols=138 Identities=14% Similarity=0.195 Sum_probs=84.8
Q ss_pred chHHHHHHHhcCcEEEEccCCCCCCCCCCceEEEecccchHHHHHHHHHHHhCCCeEE-eCChhHHhhhccHHHHHHHHh
Q 022979 45 QPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTI-LDPPDAIKHLHNRQSMLQDVA 123 (289)
Q Consensus 45 ~~~l~~~~~~~gi~~v~iD~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~V-iDP~~~i~~l~dR~~~l~~l~ 123 (289)
...+.++|++.|++.|-.=.. .+ ++. . .+.+..++. .+.+ --++++++.+.|+..+-+.++
T Consensus 62 ~e~Il~~a~~~~idaIiPG~g-fl-------------sE~--~-~~a~~~e~~-Gi~~iGps~ea~~~~~DK~~ar~ll~ 123 (1201)
T TIGR02712 62 IDKILAAAKKTGAQAIHPGYG-FL-------------SEN--A-AFAEACEAA-GIVFVGPTPEQIRKFGLKHTARELAE 123 (1201)
T ss_pred HHHHHHHHHHHCCCEEEeCCc-cc-------------ccC--H-HHHHHHHHc-CCcEECCCHHHHHHhcCHHHHHHHHH
Confidence 346888999999875421111 11 111 1 123333333 4543 456899999999999888887
Q ss_pred hcccCCCCCceec-CceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEeccCCCCC----C--------
Q 022979 124 DLNLSDCNGKVRV-PRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE----L-------- 190 (289)
Q Consensus 124 ~l~~~~~~~~i~~-P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~----L-------- 190 (289)
+.. |.+ |.+..++ +.+++.+. ...+.||+|+||....| +..|.++.+++.|.. +
T Consensus 124 ~~G-------VPt~p~~~lv~-s~dea~~~--a~~igyPvVVKP~~ggG---G~GV~iv~~~eEL~~a~~~~~~~~~~~f 190 (1201)
T TIGR02712 124 AAG-------VPLLPGTGLLS-SLDEALEA--AKEIGYPVMLKSTAGGG---GIGMQKCDSAAELAEAFETVKRLGESFF 190 (1201)
T ss_pred HCC-------CCCCCceeecC-CHHHHHHH--HHhcCCeEEEEECCCCC---CCCEEEECCHHHHHHHHHHHHHHHHHhc
Confidence 543 444 3344443 22222121 24678999999987554 578999999988752 1
Q ss_pred -CCCeeEEEeeecceeEEEEEEEcc
Q 022979 191 -EPPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 191 -~~P~VlQeFINH~gvLfKVYVvGd 214 (289)
..++++||||..+ .=+=|.|+||
T Consensus 191 ~~~~vlVEefI~g~-~eveV~v~~D 214 (1201)
T TIGR02712 191 GDAGVFLERFVENA-RHVEVQIFGD 214 (1201)
T ss_pred CCCcEEEEecCCCC-EEEEEEEEEC
Confidence 2469999999853 4455555654
No 63
>PRK12999 pyruvate carboxylase; Reviewed
Probab=94.86 E-value=0.03 Score=62.17 Aligned_cols=102 Identities=15% Similarity=0.247 Sum_probs=68.0
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceE--EEcCCCCCchhHHHhcCCccceEeeeccccCCCCc
Q 022979 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 175 (289)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~S 175 (289)
++.++ -++++++.+.|+..+.+.+.+.. |.+|+.. .+. +.+++.+. ...+.||+|+||....| +
T Consensus 103 Gi~fiGps~eai~~~~DK~~~r~~l~~~G-------VPv~P~~~~~v~-s~eea~~~--a~~iGyPvVVKP~~GgG---G 169 (1146)
T PRK12999 103 GITFIGPTAEVLRLLGDKVAARNAAIKAG-------VPVIPGSEGPID-DIEEALEF--AEEIGYPIMLKASAGGG---G 169 (1146)
T ss_pred CCcccCCCHHHHHHhCCHHHHHHHHHHCC-------CCCCCCcccCCC-CHHHHHHH--HHHhCCCEEEEECCCCC---C
Confidence 45444 56889999999999999887643 3343332 222 22222222 23678999999988665 5
Q ss_pred eeeEEEeccCCCCC------------C-CCCeeEEEeeecceeEEEEEEEcc
Q 022979 176 HELFLAYDRFSLSE------------L-EPPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 176 H~Maivf~~~gL~~------------L-~~P~VlQeFINH~gvLfKVYVvGd 214 (289)
..|.+|.+++.|.. + ..++++|+||.. +.-+=|-|+||
T Consensus 170 rGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g-~~~ieVqvl~D 220 (1146)
T PRK12999 170 RGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVEN-PRHIEVQILGD 220 (1146)
T ss_pred CCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCC-CeEEEEEEEEE
Confidence 88999999988743 1 357999999974 33355666665
No 64
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=93.69 E-value=2.4 Score=43.00 Aligned_cols=133 Identities=14% Similarity=0.213 Sum_probs=79.2
Q ss_pred HHHHHHHhcCcEEEEccCCCCCCCCCCceEEEecccchHHHHHHHHHHHhCCCeEEe-CChhHHhhhccHHHHHHHHhhc
Q 022979 47 KLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADL 125 (289)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~Vi-DP~~~i~~l~dR~~~l~~l~~l 125 (289)
.+.++|++.++++|-+..+.| ..+.+.+..++. .+.++ -+.++++...|+..|-+.+.+.
T Consensus 60 ~l~~~a~~~~id~Vi~g~E~~------------------l~~glad~l~~~-Gi~v~Gps~~aa~le~dK~~~K~~l~~~ 120 (486)
T PRK05784 60 EVKKVAKEVNPDLVVIGPEEP------------------LFAGVADVLREE-GFPVFGASSKCARIEKSKVWARELMWKY 120 (486)
T ss_pred HHHHHHHHhCCCEEEECCchH------------------HHHHHHHHHHhC-CCCEECCcHHHHHHhcCHHHHHHHHHHc
Confidence 577888888877766543222 222233333333 55554 5567778888888777777653
Q ss_pred ccCCCCCceecC-ceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEeccCCC-----------------
Q 022979 126 NLSDCNGKVRVP-RQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSL----------------- 187 (289)
Q Consensus 126 ~~~~~~~~i~~P-~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL----------------- 187 (289)
.|.+| ++..++ +.+++.+.+ ...+|+|+||.-..| |-.|.++.+.+.+
T Consensus 121 -------gIpt~~~~~~~~-~~~ea~~~~---~~~~PvVVKP~~~ag---gkGV~iv~~~~e~~~~~~~ea~~~a~~~~~ 186 (486)
T PRK05784 121 -------SIPGRLRYKVFY-DVEEAAKFI---EYGGSVAIKPARQAG---GKGVKVIADLQAYLSQEKREALTKSVNDIK 186 (486)
T ss_pred -------CcCCCccceEeC-CHHHHHHHH---hhcCCEEEeeCCCCC---CCCEEEECChhHhcchhHHHHHHHHHHHHH
Confidence 35564 576664 222222222 123799999966554 5678899886521
Q ss_pred ---C---CCCCCeeEEEeeecceeEEEEEEEcc
Q 022979 188 ---S---ELEPPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 188 ---~---~L~~P~VlQeFINH~gvLfKVYVvGd 214 (289)
. +-..++|+|||+. |.=|=|.++.|
T Consensus 187 ~~~~~~g~~~~~VlIEEfL~--G~E~SV~al~d 217 (486)
T PRK05784 187 EGSAYYKDVEPKILVEEKVD--GVEYTLQVLTD 217 (486)
T ss_pred HhHhhccCCCCeEEEEEccC--CeEEEEEEEEC
Confidence 1 1135799999998 44455555543
No 65
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=93.52 E-value=0.84 Score=44.96 Aligned_cols=141 Identities=18% Similarity=0.179 Sum_probs=92.8
Q ss_pred HHHHhcCcEEEEccCCCCCCCCCCc-eEEEecccchH------------------HHHHHHHHHHhCCCeEEeCChhHHh
Q 022979 50 ILARNKGISFVAIDQNRPLSDQGPF-DVVLHKLSGME------------------WCKIIEDYRQKHPEVTILDPPDAIK 110 (289)
Q Consensus 50 ~~~~~~gi~~v~iD~~~pl~~Qgp~-DvILHKltd~~------------------~~~~l~~y~~~hP~v~ViDP~~~i~ 110 (289)
.-++..|+.++.+|++.+=..-.-- ++|....+|.+ |-...-++..++ +.|-=++++++
T Consensus 18 ~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~EfE~V~~~aL~~l~~~--~~v~p~~~~l~ 95 (375)
T COG0026 18 LAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITYEFENVPAEALEKLAAS--VKVFPSPDALR 95 (375)
T ss_pred HHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEEeeccCCHHHHHHHHhh--cCcCCCHHHHH
Confidence 3456689999999987543332223 34444434321 112222344443 66777899999
Q ss_pred hhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEeccCCCCC-
Q 022979 111 HLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE- 189 (289)
Q Consensus 111 ~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~- 189 (289)
...||...=+.|.++ .+.+|.|..++ +.+++...+.. +.||.|.|... |-=+-+.=.+|.+.+++..
T Consensus 96 ~~qdR~~eK~~l~~~-------Gi~va~~~~v~-~~~el~~~~~~--~g~p~VlKtr~--gGYDGkGQ~~i~~~~~~~~~ 163 (375)
T COG0026 96 IAQDRLVEKQFLDKA-------GLPVAPFQVVD-SAEELDAAAAD--LGFPAVLKTRR--GGYDGKGQWRIRSDADLELR 163 (375)
T ss_pred HHhhHHHHHHHHHHc-------CCCCCCeEEeC-CHHHHHHHHHH--cCCceEEEecc--ccccCCCeEEeeCcccchhh
Confidence 999999888887754 46789999996 33345555554 44999999865 5556677888888887763
Q ss_pred ------CCCCeeEEEeeeccee
Q 022979 190 ------LEPPMLLQEFVNHGGI 205 (289)
Q Consensus 190 ------L~~P~VlQeFINH~gv 205 (289)
...| |+-+||+=..-
T Consensus 164 ~~~~~~~~~~-vlE~fV~F~~E 184 (375)
T COG0026 164 AAGLAEGGVP-VLEEFVPFERE 184 (375)
T ss_pred HhhhhccCce-eEEeecccceE
Confidence 1334 99999987643
No 66
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=93.45 E-value=3.3 Score=39.98 Aligned_cols=166 Identities=11% Similarity=0.022 Sum_probs=82.8
Q ss_pred hhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCcc-ceEeeeccccCCCCceeeEEEeccCCCC-
Q 022979 111 HLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKL-PLVAKPLVVDGSAKSHELFLAYDRFSLS- 188 (289)
Q Consensus 111 ~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~f-P~I~Kp~vA~Gs~~SH~Maivf~~~gL~- 188 (289)
.+-|.......+++ ..|.+|+...+.....+ .+.+.+.--.+ |+|+||+..++- ..+.++-+.++..
T Consensus 34 ~~~DK~~t~~lL~~-------aglpvP~T~~~~s~~~~-~~~l~~~~~~~~~VVVKPl~Gs~G---rGI~~i~~~~~~~~ 102 (317)
T TIGR02291 34 LVDDKLKTKIIAQA-------AGITVPELYGVIHNQAE-VKTIHNIVKDHPDFVIKPAQGSGG---KGILVITSRKDGRY 102 (317)
T ss_pred ccccHHHHHHHHHH-------cCCCCCCEEEecCchhh-HHHHHHHHccCCCEEEEECCCCCc---cCeEEEEecccccc
Confidence 34445555455442 35788997776432222 12222221245 699999996654 3455554443211
Q ss_pred -------------------------CCCCC--eeEEEee--ecce---------eEEEEEEEcceEEE-EEecCCC----
Q 022979 189 -------------------------ELEPP--MLLQEFV--NHGG---------ILFKIYIIGETIKV-VRRFSLP---- 225 (289)
Q Consensus 189 -------------------------~L~~P--~VlQeFI--NH~g---------vLfKVYVvGd~v~v-v~R~SLp---- 225 (289)
.+..+ ..+|||+ .|.. -=..|+|+|+.+.. ..|.+..
T Consensus 103 ~~~~~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV~vv~~~~vaa~~R~~~~~~~~ 182 (317)
T TIGR02291 103 RKPSGATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRIIVFKGYPVMAMMRLPTRASDG 182 (317)
T ss_pred ccccccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEEEEECCEEEEEEEEccCccCCc
Confidence 22222 5677887 4421 35899999998875 4454432
Q ss_pred --CCchhhhhc----cceeeeeCCcc-CCCcCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHhCCeEeee
Q 022979 226 --NVSKRELAK----VVSVFRFPRVS-SAAASADDADLDPGIAELPPRPLLERLARELRHRLVNILVFC 287 (289)
Q Consensus 226 --n~~~~~~~~----~~~~~~f~~vS-~~~~~~~~~~ld~~~~e~p~~~~l~~iA~~LR~~LgL~LFG~ 287 (289)
|+..+.... .+|.+...-.. +..+....+...-.-.+.|..+.+.++|....+.+|+.++|.
T Consensus 183 ~tN~~~Gg~~~~vdl~tG~l~~~~~~~~~~~~HP~t~~~~~g~~ip~~~el~~la~~A~~~~g~~~~Gv 251 (317)
T TIGR02291 183 KANLHQGAVGVGIDLATGKTIRAVWFNQPITHHPDTGKDLSGLQVPHWERLLELAASCWELTGLGYMGV 251 (317)
T ss_pred ccccccCCceeeeecCCCccccccccCCccccCCCcccccccCCChhHHHHHHHHHHHHHhcCCCeEEE
Confidence 333322110 01111110000 000000111100001235566778899999999999887773
No 67
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=93.39 E-value=0.36 Score=46.74 Aligned_cols=126 Identities=15% Similarity=0.221 Sum_probs=82.3
Q ss_pred HHHHHHhcCcEEEEccCCCCCCCCCCceEEEecccchHHHHHHHHHHHhCCCeEEeCChhHHhhhccHHHHHHHHhhccc
Q 022979 48 LEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNL 127 (289)
Q Consensus 48 l~~~~~~~gi~~v~iD~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~ViDP~~~i~~l~dR~~~l~~l~~l~~ 127 (289)
+.+.|+++||+ +|+-..+.+...+.-++|.+.-=.+.+-...+.++.+.|...+++.+++.
T Consensus 58 ~l~~C~~~~Id-----------------v~~P~~~~~~l~~~r~~F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~~~~~-- 118 (329)
T PF15632_consen 58 CLDFCKEHGID-----------------VFVPGRNRELLAAHRDEFEALGVKLLTASSAETLELADDKAAFYEFMEAN-- 118 (329)
T ss_pred HHHHHHHhCCe-----------------EEEcCccHHHHHHHHHHHHHhCCEEEecCCHHHHHHHhhHHHHHHHHHhC--
Confidence 66677777754 44444444445555667776654555545699999999999999999852
Q ss_pred CCCCCceecCceEEEcCCCCCchhHHHhcCCccc---eEeeeccccCCCCceeeEEEe-ccCCCCCC-------------
Q 022979 128 SDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLP---LVAKPLVVDGSAKSHELFLAY-DRFSLSEL------------- 190 (289)
Q Consensus 128 ~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP---~I~Kp~vA~Gs~~SH~Maivf-~~~gL~~L------------- 190 (289)
.+.+|.+..+++ .+++... -+.+++| +.+||....|+. ..-++- +...+..+
T Consensus 119 -----~ipvp~~~~v~t-~~el~~a--~~~l~~~~~~~CvKP~~g~gg~---GFr~l~~~~~~l~~l~~~~~~~i~~~~~ 187 (329)
T PF15632_consen 119 -----GIPVPPYWRVRT-ADELKAA--YEELRFPGQPLCVKPAVGIGGR---GFRVLDESRDELDALFEPDSRRISLDEL 187 (329)
T ss_pred -----CCCCCCEEEeCC-HHHHHHH--HHhcCCCCceEEEecccCCCcc---eEEEEccCcchHHHhcCCCcceeCHHHH
Confidence 457899998852 2222222 2356666 999999988863 455555 23333211
Q ss_pred ---------CCCeeEEEeeecc
Q 022979 191 ---------EPPMLLQEFVNHG 203 (289)
Q Consensus 191 ---------~~P~VlQeFINH~ 203 (289)
-+|+++|||..--
T Consensus 188 ~~~l~~~~~~~~llvMeyL~G~ 209 (329)
T PF15632_consen 188 LAALQRSEEFPPLLVMEYLPGP 209 (329)
T ss_pred HHHHhccCCCCCcEEecCCCCC
Confidence 3689999999643
No 68
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=91.39 E-value=0.36 Score=41.23 Aligned_cols=80 Identities=18% Similarity=0.298 Sum_probs=33.5
Q ss_pred ccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEeccCCCCCC-C
Q 022979 113 HNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-E 191 (289)
Q Consensus 113 ~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~L-~ 191 (289)
.|...+++.|.++ .|.+|..+.... .....+|+|+||.-.+|+ ..+.++-+.+.+... .
T Consensus 2 ~dK~~~~~~L~~~-------gi~~P~~~~~~~----------~~~~~~~~viKp~~G~Gg---~~i~~~~~~~~~~~~~~ 61 (161)
T PF02655_consen 2 SDKLKTYKFLKEL-------GIPVPTTLRDSE----------PEPIDGPWVIKPRDGAGG---EGIRIVDSEDELEEFLN 61 (161)
T ss_dssp TSHHHHHHHHTTT--------S--------EE----------SS--SSSEEEEESS----------B--SS--TTE----
T ss_pred CCHHHHHHHHHcc-------CCCCCCcccccc----------ccccCCcEEEEeCCCCCC---CCeEEECCchhhccccc
Confidence 4677788888754 355773333211 123489999999998885 567778888766533 2
Q ss_pred CCeeEEEeeecceeEEEEEEEcc
Q 022979 192 PPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 192 ~P~VlQeFINH~gvLfKVYVvGd 214 (289)
.-.++||||. |.=|=+.++.+
T Consensus 62 ~~~i~Qe~i~--G~~~Sv~~l~~ 82 (161)
T PF02655_consen 62 KLRIVQEFIE--GEPYSVSFLAS 82 (161)
T ss_dssp ---EEEE-----SEEEEEEEEE-
T ss_pred cceEEeeeeC--CEEeEEEEEEe
Confidence 2349999996 45555555543
No 69
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=90.01 E-value=0.73 Score=45.10 Aligned_cols=134 Identities=16% Similarity=0.238 Sum_probs=77.3
Q ss_pred HHHHHHHhcCcEEEEccCCCCC---CCCCCce-EEEec-c---cchHHHHHHH------------------HHHHhCCCe
Q 022979 47 KLEILARNKGISFVAIDQNRPL---SDQGPFD-VVLHK-L---SGMEWCKIIE------------------DYRQKHPEV 100 (289)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~pl---~~Qgp~D-vILHK-l---td~~~~~~l~------------------~y~~~hP~v 100 (289)
.+..-|++.|+..+-+...... ....-.| .+.+. . +++.....+. ++.++.. +
T Consensus 31 ~I~~gAkeeGf~ti~v~~~~~~~~y~~~~~~De~i~v~~~~di~~~~~~~~l~~~~~iiIp~gs~v~y~~~d~l~~~~-~ 109 (358)
T PRK13278 31 QILKGAKKEGFRTIAICKKKREVFYKRFPVADEFIIVDDFSDILNEAVQEKLREMNAILIPHGSFVAYLGLENVEKFK-V 109 (358)
T ss_pred HHHHHHHHCCCeEEEEEeCCCccccccccccceEEEEcchhhhcCHHHHHHHhhcCcEEEeCCCcceeecHHHHHHCC-C
Confidence 4666788889888888776542 1112223 33333 2 2222212221 1222221 2
Q ss_pred EEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEE
Q 022979 101 TILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL 180 (289)
Q Consensus 101 ~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Mai 180 (289)
.+.=..++++...||..+-+.+++. .|.+|+++ + +. ..+.||+|+||..+.| +..-.+
T Consensus 110 p~~gn~~~l~~e~dK~~~k~~L~~a-------GIp~p~~~--~-~~---------~~i~~PvIVKp~~g~g---gkGv~i 167 (358)
T PRK13278 110 PMFGNREILRWEADRDKERKLLEEA-------GIRIPRKY--E-SP---------EDIDRPVIVKLPGAKG---GRGYFI 167 (358)
T ss_pred CcCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCEe--C-CH---------HHcCCCEEEEeCCCCC---CCCeEE
Confidence 3334556677777888777777643 46677763 2 11 1356999999965444 577778
Q ss_pred EeccCCCCC----C--------CCCeeEEEeeecc
Q 022979 181 AYDRFSLSE----L--------EPPMLLQEFVNHG 203 (289)
Q Consensus 181 vf~~~gL~~----L--------~~P~VlQeFINH~ 203 (289)
+.+++.+.+ + ...+++||||..-
T Consensus 168 ~~s~~El~~~~~~l~~~~~~~~~~~~iIEEfI~G~ 202 (358)
T PRK13278 168 AKSPEEFKEKIDKLIERGLITEVEEAIIQEYVVGV 202 (358)
T ss_pred eCCHHHHHHHHHHHHhccccCCCCeEEEEecCCCc
Confidence 888876532 1 4679999999744
No 70
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=88.91 E-value=3.7 Score=40.22 Aligned_cols=154 Identities=17% Similarity=0.220 Sum_probs=94.9
Q ss_pred CCccEEEEEEechhhhhhccchHHHHHHHhcCcEEEEccCCCCCCCCCCceEEEecccch----------HH-HHHHHHH
Q 022979 25 QPERLVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGM----------EW-CKIIEDY 93 (289)
Q Consensus 25 ~~~~~~VGy~l~~kK~~~~~~~~l~~~~~~~gi~~v~iD~~~pl~~Qgp~DvILHKltd~----------~~-~~~l~~y 93 (289)
+.+.++||. +.+.+...|.+-|+....++.=.|..-++..+.++--.+.. .| .+.++++
T Consensus 11 ~~kiLviGv----------ntR~vveSA~klGf~V~sv~~y~~~Dl~~~a~~~l~~r~~~~~~rfe~~de~~li~~~~~~ 80 (389)
T COG2232 11 SCKILVIGV----------NTRPVVESASKLGFEVYSVQYYDPADLPGDAISYLRERPGELLGRFENLDEQKLIEAAEDL 80 (389)
T ss_pred cceEEEEee----------cchHhHHHHHhcCeEEEEeEeecccccccccceEEEecChhhcCcccCCCHHHHHHHHHhh
Confidence 345777774 56668888999999999888887777677788877665543 34 2334444
Q ss_pred HHhCCCe---------------------EEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhH
Q 022979 94 RQKHPEV---------------------TILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQ 152 (289)
Q Consensus 94 ~~~hP~v---------------------~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~ 152 (289)
.... ++ .=.+|-..+..+-||...++.+..+... .|..-. .+.
T Consensus 81 ~~dv-D~~ii~~sg~e~l~~~g~~~~~v~~n~P~~~v~~~snk~~~~r~l~~lgmp-------~p~~~~--------~e~ 144 (389)
T COG2232 81 AEDV-DAPIIPFSGFEALRTSGELGCEVAGNEPEVKVVEASNKLKFYRKLEVLGMP-------EPSEKK--------IEP 144 (389)
T ss_pred hhhc-ceeeeeccccccccccCccccccccCCcHHHHHHHHHHHhhhhhhhhcCCC-------CChhhh--------hhh
Confidence 4322 12 1125555777778888888877765332 121111 122
Q ss_pred HHhcCCccceEeeeccccCCCCceeeEEEeccCCCCCCCCCeeEEEeeecceeEEEEEEEcc
Q 022979 153 VFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 153 l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~L~~P~VlQeFINH~gvLfKVYVvGd 214 (289)
+. --..++|.||+...|.. .=.+-|+++.- .+++++||||- |+=+-|-+|++
T Consensus 145 ~~--~gekt~IlKPv~GaGG~---~el~~~~Ee~~---~~~~i~Qefi~--G~p~Svs~is~ 196 (389)
T COG2232 145 LE--EGEKTLILKPVSGAGGL---VELVKFDEEDP---PPGFIFQEFIE--GRPVSVSFISN 196 (389)
T ss_pred hh--hcceeeEEeeccCCCce---eeecccccccC---CcceehhhhcC--CceeEEEEEec
Confidence 22 23678999999988864 22222333332 37799999995 55555666655
No 71
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=88.71 E-value=0.34 Score=42.75 Aligned_cols=124 Identities=25% Similarity=0.266 Sum_probs=54.6
Q ss_pred cCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEeccCCCC--------CCCCCeeEEEeeecc--ee
Q 022979 136 VPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLS--------ELEPPMLLQEFVNHG--GI 205 (289)
Q Consensus 136 ~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~--------~L~~P~VlQeFINH~--gv 205 (289)
+|..++-. +.+.+.+-+++.|= +|+||+.+.|...-+++.- +...++ .-..|+++|+|+.-- |=
T Consensus 12 ~P~T~vs~-~~~~i~~f~~~~~~---~VlKPl~g~gG~gV~~i~~--~~~n~~~i~e~~~~~~~~~~mvQ~flp~i~~GD 85 (173)
T PF02955_consen 12 IPPTLVSR-DKEEIRAFIEEHGD---IVLKPLDGMGGRGVFRISR--DDPNLNSILETLTKNGERPVMVQPFLPEIKEGD 85 (173)
T ss_dssp S--EEEES--HHHHHHHHHHHSS---EEEEESS--TTTT-EEE-T--T-TTHHHHHHHHTTTTTS-EEEEE--GGGGG-E
T ss_pred CcCEEEEC-CHHHHHHHHHHCCC---EEEEECCCCCCcCEEEEcC--CCCCHHHHHHHHHhcCCccEEEEeccccccCCC
Confidence 46666553 44445555555543 9999999999877665543 222222 224689999998743 32
Q ss_pred EEEE-EEEcceEEEEEe-cCCCCCchhhhhccceeeeeCCccCCCcCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHhCCe
Q 022979 206 LFKI-YIIGETIKVVRR-FSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLVNI 283 (289)
Q Consensus 206 LfKV-YVvGd~v~vv~R-~SLpn~~~~~~~~~~~~~~f~~vS~~~~~~~~~~ld~~~~e~p~~~~l~~iA~~LR~~LgL~ 283 (289)
.-+ |+=|..++.+.| |+-.++..+.. ..|... ...+++ -..+++++++..|++. ||-
T Consensus 86 -kRii~~nG~~~~av~R~P~~gd~R~N~~--~Gg~~~------------~~~lt~-----~e~~i~~~i~~~L~~~-Gl~ 144 (173)
T PF02955_consen 86 -KRIILFNGEPSHAVRRIPAKGDFRSNLA--AGGSAE------------PAELTE-----REREICEQIGPKLRED-GLL 144 (173)
T ss_dssp -EEEEEETTEE-SEEEEE--SS-S---GG--GTSCEE------------EEE--H-----HHHHHHHHHHHHHHHT-T--
T ss_pred -EEEEEECCEEhHHeecCCCCCCceeeec--cCCcee------------ecCCCH-----HHHHHHHHHHHHHhhc-CcE
Confidence 233 444566665555 33333333211 111110 011110 0246888899988876 655
Q ss_pred Eee
Q 022979 284 LVF 286 (289)
Q Consensus 284 LFG 286 (289)
+-|
T Consensus 145 f~G 147 (173)
T PF02955_consen 145 FVG 147 (173)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 72
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=88.21 E-value=0.42 Score=46.16 Aligned_cols=87 Identities=17% Similarity=0.310 Sum_probs=47.3
Q ss_pred hHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCC-CCceeeE-EEecc
Q 022979 107 DAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGS-AKSHELF-LAYDR 184 (289)
Q Consensus 107 ~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs-~~SH~Ma-ivf~~ 184 (289)
...+.|.+.-.+|+.-+++ .+..|+-+.+++..+ . .-..|+||+|.||=..-|. ..+..=+ .+-+.
T Consensus 107 ~~l~wlceKPllY~ra~el-------gl~~P~Ty~v~S~~d----~-~~~el~FPvILKP~mgg~~~~~araKa~~a~d~ 174 (415)
T COG3919 107 ALLRWLCEKPLLYNRAEEL-------GLPYPKTYLVNSEID----T-LVDELTFPVILKPGMGGSVHFEARAKAFTAADN 174 (415)
T ss_pred HHHHHHhhCcHHHHHHHHh-------CCCCcceEEecchhh----h-hhhheeeeEEecCCCCCcceeehhhheeeccCH
Confidence 3344444444455554444 356889888874321 1 1347999999999775442 1111111 12222
Q ss_pred CCCC----CC---CCC--eeEEEeeeccee
Q 022979 185 FSLS----EL---EPP--MLLQEFVNHGGI 205 (289)
Q Consensus 185 ~gL~----~L---~~P--~VlQeFINH~gv 205 (289)
+.++ ++ -.| +|+||||.-||-
T Consensus 175 ee~k~a~~~a~eeigpDnvvvQe~IPGGgE 204 (415)
T COG3919 175 EEMKLALHRAYEEIGPDNVVVQEFIPGGGE 204 (415)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEecCCCCc
Confidence 2222 11 123 999999998864
No 73
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=88.11 E-value=0.86 Score=44.85 Aligned_cols=55 Identities=18% Similarity=0.202 Sum_probs=38.4
Q ss_pred ceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccC--CCCceeeEEEeccCCCCC----CC----------CCeeE
Q 022979 133 KVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDG--SAKSHELFLAYDRFSLSE----LE----------PPMLL 196 (289)
Q Consensus 133 ~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~G--s~~SH~Maivf~~~gL~~----L~----------~P~Vl 196 (289)
.|.+|+.+. +. ..+.+|+|+||..|.| +..- .++.+.+.|.. +. ..+++
T Consensus 138 GI~~Pk~~~---~p---------~eId~PVIVKp~~asG~~srG~---f~a~s~eEl~~~a~~l~~~g~I~~~~~~~~iI 202 (366)
T PRK13277 138 GIPYPKLFK---DP---------EEIDRPVIVKLPEAKRRLERGF---FTASSYEDFYEKSEELIKAGVIDREDLKNARI 202 (366)
T ss_pred CCCCceeec---Cc---------cccCccEEEEECCCCCccccCe---EeeCCHHHHHHHHHhhhhcCccccccccccee
Confidence 577787765 11 3679999999999999 6553 36777776541 11 34689
Q ss_pred EEeeec
Q 022979 197 QEFVNH 202 (289)
Q Consensus 197 QeFINH 202 (289)
||||.-
T Consensus 203 QEyI~G 208 (366)
T PRK13277 203 EEYVIG 208 (366)
T ss_pred EeccCC
Confidence 999973
No 74
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=85.68 E-value=1.3 Score=44.65 Aligned_cols=120 Identities=16% Similarity=0.236 Sum_probs=74.4
Q ss_pred HHHHHHHhCCCeEEeCChh-HHhhhccHHHHHHHHhhcccCCCCCceecCceEE-EcCCCCCchhHHHhcCCccceEeee
Q 022979 89 IIEDYRQKHPEVTILDPPD-AIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMV-ITKDSLSIPDQVFEAGLKLPLVAKP 166 (289)
Q Consensus 89 ~l~~y~~~hP~v~ViDP~~-~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~-i~~~~~~~~~~l~~agl~fP~I~Kp 166 (289)
.+.+-.+++ .+..|=|.. +++.+-|..+|-+.+++.. |.+|+... .-.+.++.....++.| ||+|+||
T Consensus 90 ~fae~~~~~-gl~fiGP~~~~i~~mgdK~~ar~~~~~aG-------VP~vpgs~~~~~~~ee~~~~a~~iG--yPVivKa 159 (449)
T COG0439 90 AFAEACAEA-GLTFIGPSAEAIRRMGDKITARRLMAKAG-------VPVVPGSDGAVADNEEALAIAEEIG--YPVIVKA 159 (449)
T ss_pred HHHHHHHHc-CCeeeCcCHHHHHHhhhHHHHHHHHHHcC-------CCcCCCCCCCcCCHHHHHHHHHHcC--CCEEEEE
Confidence 344555555 488888754 4555558888888887532 22222220 0012223334455556 9999999
Q ss_pred ccccCCCCceeeEEEeccCCCCC------------CCCC-eeEEEeeecceeEEEEEEEcceE----EEEEec
Q 022979 167 LVVDGSAKSHELFLAYDRFSLSE------------LEPP-MLLQEFVNHGGILFKIYIIGETI----KVVRRF 222 (289)
Q Consensus 167 ~vA~Gs~~SH~Maivf~~~gL~~------------L~~P-~VlQeFINH~gvLfKVYVvGd~v----~vv~R~ 222 (289)
...-|+ --|-+|.+.+.|.+ ...| +.+++||+.- .=.=|-|+||.. +...|-
T Consensus 160 ~~GgGg---~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~-rhievqv~gD~~g~~i~l~eRd 228 (449)
T COG0439 160 AAGGGG---RGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGP-RHIEVQVLGDGHGNVIHLGERD 228 (449)
T ss_pred CCCCCc---ccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCC-ceEEEEEEEcCcccEEEEEecc
Confidence 887664 67999999998853 2345 9999999865 223355777655 444554
No 75
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=84.20 E-value=5 Score=39.98 Aligned_cols=98 Identities=17% Similarity=0.282 Sum_probs=63.7
Q ss_pred eEEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeE
Q 022979 100 VTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELF 179 (289)
Q Consensus 100 v~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Ma 179 (289)
=+|.=++++|+.--||....+.+.+++ +.+|..+.-. .++..+. ...+.||+|+||-..-|+.. -.
T Consensus 102 ~vvgs~~eaI~iaeDr~~fke~m~eig-------i~~P~~~~~~--~~e~~~~--~~~ig~PvIVrP~~~lGG~G---~~ 167 (400)
T COG0458 102 EVVGSDPEAIEIAEDKKLFKEAMREIG-------IPVPSRIAHS--VEEADEI--ADEIGYPVIVKPSFGLGGSG---GG 167 (400)
T ss_pred EEEecCHHHhhhhhhHHHHHHHHHHcC-------CCCCcccccc--HHHHhhh--HhhcCCCEEEecCcCCCCCc---ee
Confidence 456789999999999999999998764 4566332211 1111122 23567999999999888644 47
Q ss_pred EEeccCCCCC--------C-CCCeeEEEeeecceeEEEEEEE
Q 022979 180 LAYDRFSLSE--------L-EPPMLLQEFVNHGGILFKIYII 212 (289)
Q Consensus 180 ivf~~~gL~~--------L-~~P~VlQeFINH~gvLfKVYVv 212 (289)
+++|++.|.. . -.+|+++|+|- |...|..=|+
T Consensus 168 i~~n~eel~~~~~~~l~~s~~~~vl~eesi~-G~ke~e~ev~ 208 (400)
T COG0458 168 IAYNEEELEEIIEEGLRASPVEEVLIEESII-GWKEFEYEVV 208 (400)
T ss_pred EEeCHHHHHHHHHhccccCccccceeeeeec-CceEEEEEEE
Confidence 8999886652 2 13567777665 4444444444
No 76
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=83.76 E-value=0.41 Score=42.03 Aligned_cols=68 Identities=19% Similarity=0.265 Sum_probs=42.6
Q ss_pred ceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEeccCCCCC----C-CCCeeEEEeeeccee
Q 022979 133 KVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE----L-EPPMLLQEFVNHGGI 205 (289)
Q Consensus 133 ~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~----L-~~P~VlQeFINH~gv 205 (289)
.+.+|+|..+.+ .+++.+.+ ..+.||+|.|+.. |.-+-+.-.+|.+++.+.+ + ..||++++||+...-
T Consensus 5 gip~~~~~~i~~-~~~l~~a~--~~iG~P~vlK~~~--~GYDGkGq~~i~~~~dl~~a~~~~~~~~~ilE~~v~f~~E 77 (172)
T PF02222_consen 5 GIPTAPYATIDS-LEDLEEAA--ESIGFPAVLKTRR--GGYDGKGQFVIRSEEDLEKAWQELGGGPCILEEFVPFDRE 77 (172)
T ss_dssp T--B-EEEEESS-HHHHHHHH--HHHTSSEEEEESS--SSCTTTTEEEESSGGGHHHHHHHTTTSCEEEEE---ESEE
T ss_pred CCCCCCeEEECC-HHHHHHHH--HHcCCCEEEEccC--cCcCCCccEEECCHHHHHHHHHhcCCCcEEEEeccCCcEE
Confidence 477899999952 22232332 3579999999755 3334566778999998864 3 579999999998743
No 77
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=80.86 E-value=34 Score=32.93 Aligned_cols=219 Identities=16% Similarity=0.070 Sum_probs=124.7
Q ss_pred HHHHHHhcCcEEEEccCCCCCCC---C-------CCceEEEecccchH-HHHHHHHHHHhCCCeEEeCChhHHhhhccHH
Q 022979 48 LEILARNKGISFVAIDQNRPLSD---Q-------GPFDVVLHKLSGME-WCKIIEDYRQKHPEVTILDPPDAIKHLHNRQ 116 (289)
Q Consensus 48 l~~~~~~~gi~~v~iD~~~pl~~---Q-------gp~DvILHKltd~~-~~~~l~~y~~~hP~v~ViDP~~~i~~l~dR~ 116 (289)
+...-+..|.+..++|.+....- + ..+|+++-.+.+.. -...+|.|.+.+-=-.|+=|+.+-.--+|..
T Consensus 26 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvfp~lhG~~gEDg~iqg~le~~giPyvg~gv~~Sa~~mdk~ 105 (317)
T COG1181 26 VLRALKGFGYDVTPVDITEAGLWMLDKEVTKRVLQKADVVFPVLHGPYGEDGTIQGLLELLGIPYVGKGVLASAGAMDKI 105 (317)
T ss_pred HHHHHhhcCceeEEEeccccceEEeccccchhhcccCCEEEEeCCCCCCCCchHHHHHHHhCCCEecCchhhhhhcccHH
Confidence 44444457888888888754321 1 46777665554431 0224677777654345566666655556655
Q ss_pred HHHHHHhhcccCCCCCceecCceEEEcCCC-CCchhHHHhcCCccceEeeeccccCCCCceeeEEEeccCCCCC------
Q 022979 117 SMLQDVADLNLSDCNGKVRVPRQMVITKDS-LSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE------ 189 (289)
Q Consensus 117 ~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~-~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~------ 189 (289)
.+-..... ..+.++.++.++.+. .+..-.-...++.||+++||--. || |=.+..+.+...+..
T Consensus 106 ~~K~~~~~-------~g~~~a~~~~~~~~~~~~~~~e~~~~~l~~p~~Vkp~~~-gS--Svg~~~v~~~~d~~~~~e~a~ 175 (317)
T COG1181 106 VTKRLFKA-------EGLPVAPYVALTRDEYSSVIVEEVEEGLGFPLFVKPARE-GS--SVGRSPVNVEGDLQSALELAF 175 (317)
T ss_pred HHHHHHHH-------CCCCccceeeeecccchhHHHHHhhcccCCCEEEEcCCc-cc--eeeEEEeeeccchHHHHHHHH
Confidence 44433332 245667777775432 33333334579999999999763 43 567888999888863
Q ss_pred -CCCCeeEEEeeecceeEEEEEEEcceEEEEEecCCCCCchhhhhccceeeeeCCccCCCcCCCcCCCCCCCCCCCC--H
Q 022979 190 -LEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPP--R 266 (289)
Q Consensus 190 -L~~P~VlQeFINH~gvLfKVYVvGd~v~vv~R~SLpn~~~~~~~~~~~~~~f~~vS~~~~~~~~~~ld~~~~e~p~--~ 266 (289)
-+...++++|++ +.=..|=|+|+......-+. --+.. +...++.+.. +...+.. +..+. .+..++ .
T Consensus 176 ~~d~~vl~e~~~~--~rei~v~vl~~~~~~~~l~~-~eI~~----~~~~fydye~-Ky~~~gg--~~~~~-pa~lt~~~~ 244 (317)
T COG1181 176 KYDRDVLREQGIT--GREIEVGVLGNDYEEQALPL-GEIPP----KGEEFYDYEA-KYLSTGG--AQYDI-PAGLTDEIH 244 (317)
T ss_pred HhCCceeeccCCC--cceEEEEecCCcccceecCc-eEEec----CCCeEEeeec-cccCCCC--ceeeC-CCCCCHHHH
Confidence 256799999999 88889999998662221111 11110 1122333322 1111110 00000 011111 4
Q ss_pred HHHHHHHHHHHHHhC-CeEeee
Q 022979 267 PLLERLARELRHRLV-NILVFC 287 (289)
Q Consensus 267 ~~l~~iA~~LR~~Lg-L~LFG~ 287 (289)
+.++++|...-++|| +.+=||
T Consensus 245 ~~i~~lA~~a~~alg~~g~~rv 266 (317)
T COG1181 245 EEIKELALRAYKALGCLGLARV 266 (317)
T ss_pred HHHHHHHHHHHHhcCCCceEEE
Confidence 679999999999999 665554
No 78
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=80.50 E-value=2.2 Score=38.47 Aligned_cols=54 Identities=19% Similarity=0.418 Sum_probs=38.4
Q ss_pred CCccceEeeeccccCCCCceeeEEEeccCCCCCC-------------CCCeeEEEeeecceeEEEEEEEcc
Q 022979 157 GLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 157 gl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~L-------------~~P~VlQeFINH~gvLfKVYVvGd 214 (289)
++.||+++||...-|. ..|.+++|++.|.+. ..|+++.+|+. +..=+-|=|++|
T Consensus 36 ~iGyPVliKas~ggGG---~gm~iv~~~~eL~~~~~~~~~~s~~~fg~~~v~iek~i~-~~reiEvqvi~D 102 (211)
T PF02786_consen 36 EIGYPVLIKASAGGGG---RGMRIVHNEEELEEAFERAQRESPAAFGDGPVLIEKFIE-GAREIEVQVIRD 102 (211)
T ss_dssp HH-SSEEEEETTSSTT---TSEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--S-SEEEEEEEEEEE
T ss_pred hcCCceEEeecccccc---cccccccchhhhhhhhhhccccCccccccceEEEeeehh-hhhhhhhhhhhc
Confidence 5789999999987775 679999999988632 57899999998 444555556655
No 79
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=79.32 E-value=17 Score=34.61 Aligned_cols=45 Identities=20% Similarity=0.354 Sum_probs=30.8
Q ss_pred eEeeeccccCCCCceeeEEEeccCCCCCCCCCeeEEEeeecc--eeEEEEEEEcceEEE
Q 022979 162 LVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNHG--GILFKIYIIGETIKV 218 (289)
Q Consensus 162 ~I~Kp~vA~Gs~~SH~Maivf~~~gL~~L~~P~VlQeFINH~--gvLfKVYVvGd~v~v 218 (289)
.|.||.-+||... +.|. ++.+++ +++||||.-- +|. ..+|+++.+
T Consensus 141 ~ViKp~dgCgge~-----i~~~-~~~pd~---~i~qEfIeG~~lSVS---L~~GEkv~p 187 (307)
T COG1821 141 YVIKPADGCGGEG-----ILFG-RDFPDI---EIAQEFIEGEHLSVS---LSVGEKVLP 187 (307)
T ss_pred EEecccccCCcce-----eecc-CCCcch---hhHHHhcCCcceEEE---EecCCcccc
Confidence 6999999999743 2222 233444 9999999743 555 678887765
No 80
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=73.32 E-value=22 Score=34.93 Aligned_cols=141 Identities=18% Similarity=0.241 Sum_probs=80.8
Q ss_pred HHHHHHhcCcEEEEccCCCCCCC-C-CCceEEEecccchHHH--------------------HHHHHHHHhCCCeEEeCC
Q 022979 48 LEILARNKGISFVAIDQNRPLSD-Q-GPFDVVLHKLSGMEWC--------------------KIIEDYRQKHPEVTILDP 105 (289)
Q Consensus 48 l~~~~~~~gi~~v~iD~~~pl~~-Q-gp~DvILHKltd~~~~--------------------~~l~~y~~~hP~v~ViDP 105 (289)
+.--|..-|++.+.+|-=..-.. | -....++.-+..+... +.|.++.+. ...||=.
T Consensus 27 vaIe~QRLG~eViAVDrY~~APAmqVAhrs~Vi~MlD~~al~avv~rekPd~IVpEiEAI~td~L~elE~~--G~~VVP~ 104 (394)
T COG0027 27 VAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVIDMLDGDALRAVVEREKPDYIVPEIEAIATDALVELEEE--GYTVVPN 104 (394)
T ss_pred HHHHHHhcCCEEEEecCcCCChhhhhhhheeeeeccCHHHHHHHHHhhCCCeeeehhhhhhHHHHHHHHhC--CceEccc
Confidence 44446667999999996322111 1 1223333333333222 234444443 4457777
Q ss_pred hhHHhhhccHHHHHHHHhh-cccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEecc
Q 022979 106 PDAIKHLHNRQSMLQDVAD-LNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDR 184 (289)
Q Consensus 106 ~~~i~~l~dR~~~l~~l~~-l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~ 184 (289)
-.+.+.-|||..+-+.-.+ |.+. +-+|-..+ ..+++.+ .-..+-||+++||+. |+.-|.=++|-++
T Consensus 105 ArAt~ltMnRegiRrlAAeeLglp-------Ts~Y~fa~-s~~e~~~--a~~~iGfPcvvKPvM---SSSGkGqsvv~~~ 171 (394)
T COG0027 105 ARATKLTMNREGIRRLAAEELGLP-------TSKYRFAD-SLEELRA--AVEKIGFPCVVKPVM---SSSGKGQSVVRSP 171 (394)
T ss_pred hHHHHhhhcHHHHHHHHHHHhCCC-------Cccccccc-cHHHHHH--HHHHcCCCeeccccc---ccCCCCceeecCH
Confidence 7788888999876554432 3322 22222221 1111111 224789999999999 4445788899999
Q ss_pred CCCCC-----------CCCCeeEEEeeecc
Q 022979 185 FSLSE-----------LEPPMLLQEFVNHG 203 (289)
Q Consensus 185 ~gL~~-----------L~~P~VlQeFINH~ 203 (289)
+.+.. -..-+++-+||+-+
T Consensus 172 e~ve~AW~~A~~g~R~~~~RVIVE~fv~fd 201 (394)
T COG0027 172 EDVEKAWEYAQQGGRGGSGRVIVEEFVKFD 201 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEEecce
Confidence 98753 24458999999977
No 81
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=64.20 E-value=3.4 Score=40.25 Aligned_cols=79 Identities=23% Similarity=0.262 Sum_probs=47.0
Q ss_pred ceecCceEEEcCCCCCchhHHHhcCCc-cceEeeeccccC-CCCceeeEEEeccCCCCC-----CC--------------
Q 022979 133 KVRVPRQMVITKDSLSIPDQVFEAGLK-LPLVAKPLVVDG-SAKSHELFLAYDRFSLSE-----LE-------------- 191 (289)
Q Consensus 133 ~i~~P~~v~i~~~~~~~~~~l~~agl~-fP~I~Kp~vA~G-s~~SH~Maivf~~~gL~~-----L~-------------- 191 (289)
.|.+|++..+.+ .++..+.. ..+. ||+++||.+-.| ..++-...++.+++.+.+ +.
T Consensus 16 GIpvp~~~~~~~-~~ea~~~~--~~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~~l~~~~~~~~~~~~~g~~ 92 (386)
T TIGR01016 16 GIPVPRGYVATS-VEEAEEIA--AKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAEKLLGKELVTNQTDPLGQP 92 (386)
T ss_pred CCCCCCceeeCC-HHHHHHHH--HHhCCCcEEEEecccCCCCccCceEEEeCCHHHHHHHHHHHhccceeecccCCCCCE
Confidence 577898888742 22222222 2456 999999985433 344457777777655421 11
Q ss_pred -CCeeEEEeeecceeEEEEEEEcce
Q 022979 192 -PPMLLQEFVNHGGILFKIYIIGET 215 (289)
Q Consensus 192 -~P~VlQeFINH~gvLfKVYVvGd~ 215 (289)
..+++|+|++|+--+| |-+++|.
T Consensus 93 ~~~vlVEe~v~~g~E~~-v~i~~d~ 116 (386)
T TIGR01016 93 VNKILIEEATDIDKEYY-LSIVIDR 116 (386)
T ss_pred eeEEEEEECccCCceEE-EEEEEcC
Confidence 1489999998864433 4455553
No 82
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=55.92 E-value=9.8 Score=37.12 Aligned_cols=69 Identities=26% Similarity=0.210 Sum_probs=42.7
Q ss_pred ceecCceEEEcCCCCCchhHHHhcCC-ccceEeeeccc-cCCCCceeeEEEeccCCCCC---------C--------CC-
Q 022979 133 KVRVPRQMVITKDSLSIPDQVFEAGL-KLPLVAKPLVV-DGSAKSHELFLAYDRFSLSE---------L--------EP- 192 (289)
Q Consensus 133 ~i~~P~~v~i~~~~~~~~~~l~~agl-~fP~I~Kp~vA-~Gs~~SH~Maivf~~~gL~~---------L--------~~- 192 (289)
.|.+|++.++.+ .++..... ..+ .||+++||..- -|.++++...+..+++.+.+ + ..
T Consensus 16 gIpvp~~~~~~~-~~ea~~~a--~~i~g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~a~~~i~~~~~~~~~~~~~g~~ 92 (388)
T PRK00696 16 GVPVPRGIVATT-PEEAVEAA--EELGGGVWVVKAQVHAGGRGKAGGVKLAKSPEEAREFAKQILGMTLVTHQTGPKGQP 92 (388)
T ss_pred CCCCCCCeeeCC-HHHHHHHH--HHcCCCcEEEEEeeCCCCCcccccEEEcCCHHHHHHHHHHhhccceeeeccCCCCCE
Confidence 577888887752 22222222 246 89999999753 34566777777766554421 1 01
Q ss_pred --CeeEEEeeecce
Q 022979 193 --PMLLQEFVNHGG 204 (289)
Q Consensus 193 --P~VlQeFINH~g 204 (289)
.+++|+|+.|+-
T Consensus 93 ~~gvlVe~~~~~~~ 106 (388)
T PRK00696 93 VNKVLVEEGADIAK 106 (388)
T ss_pred EeEEEEEeccCCCc
Confidence 289999998763
No 83
>KOG2356 consensus Transcriptional activator, adenine-specific DNA methyltransferase [Transcription; Signal transduction mechanisms]
Probab=43.07 E-value=22 Score=34.51 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=20.7
Q ss_pred chHHHHHHHHHHHhCCCeEEeCChh
Q 022979 83 GMEWCKIIEDYRQKHPEVTILDPPD 107 (289)
Q Consensus 83 d~~~~~~l~~y~~~hP~v~ViDP~~ 107 (289)
|....+++-++.+..|+++|||||=
T Consensus 170 Dv~~~~qll~~H~llpdlIIiDPPW 194 (366)
T KOG2356|consen 170 DVKDIEQLLRAHDLLPDLIIIDPPW 194 (366)
T ss_pred cHHHHHHHhHHHhhcCCeEEeCCCC
Confidence 4456677779999999999999984
No 84
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=42.93 E-value=12 Score=34.70 Aligned_cols=50 Identities=14% Similarity=0.302 Sum_probs=25.7
Q ss_pred cceEeeeccccCCCCceeeEEEeccCCCCC----CCCCeeEEEeeec-----c-eeEEEEEEE
Q 022979 160 LPLVAKPLVVDGSAKSHELFLAYDRFSLSE----LEPPMLLQEFVNH-----G-GILFKIYII 212 (289)
Q Consensus 160 fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~----L~~P~VlQeFINH-----~-gvLfKVYVv 212 (289)
-.||+||-..++ ...+.|+-+.+.+.+ ...+.|+|+||.- | -.=+.+||+
T Consensus 66 ~~wI~KP~~~~r---G~GI~l~~~~~~i~~~~~~~~~~~vvQkYI~~PlLi~grKFDlR~yvl 125 (292)
T PF03133_consen 66 NLWIVKPSNGSR---GRGIKLFNNLEQILRFSKNKNQPYVVQKYIENPLLIDGRKFDLRVYVL 125 (292)
T ss_dssp --EEEEES----------EEEES-HHHHHCCHCCTTS-EEEEE--SSB--BTTB-EEEEEEEE
T ss_pred CEEEEeccccCC---CCCceecCCHHHHHHHhhhhhhhhhhhhccCCCeEEeeeeEEEEEEEE
Confidence 569999987544 456777776666664 4678999999974 3 334556665
No 85
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=41.65 E-value=41 Score=33.45 Aligned_cols=67 Identities=21% Similarity=0.409 Sum_probs=39.2
Q ss_pred EechhhhhhccchHHHHHHHhcCcEEEEccCCCCCCCCCCceEEEecccch---HHHHHHHHHHHhCCCeEE
Q 022979 34 ALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGM---EWCKIIEDYRQKHPEVTI 102 (289)
Q Consensus 34 ~l~~kK~~~~~~~~l~~~~~~~gi~~v~iD~~~pl~~Qgp~DvILHKltd~---~~~~~l~~y~~~hP~v~V 102 (289)
-++....+.++...+.++.++.||+++++|++..+.+-+.-..= ..... -.-+.+++-.++||++++
T Consensus 161 D~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~~~~~~~~~~--~~~~~~~~~~y~l~~~L~~~~P~v~i 230 (394)
T PF02065_consen 161 DLSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDITEAGSPSLP--EGYHRYVLGLYRLLDRLRARFPDVLI 230 (394)
T ss_dssp -TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-TTS-SSTTS---GHHHHHHHHHHHHHHHHHHHTTTSEE
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCCCEEEeccccCCCCCCCCCch--HHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence 34444567777777888889999999999999887764411100 11000 012346677789999876
No 86
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=33.75 E-value=1.4e+02 Score=28.00 Aligned_cols=97 Identities=19% Similarity=0.213 Sum_probs=48.3
Q ss_pred CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCch--hHHHhcCCccceEeeeccccCCCCceeeEEE
Q 022979 104 DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIP--DQVFEAGLKLPLVAKPLVVDGSAKSHELFLA 181 (289)
Q Consensus 104 DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~--~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maiv 181 (289)
+|......+-|...+.+.+.+..++-...-+.+++.........+.. ..........++++||....|. +...++
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~~gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~G~~G---~Gi~~i 92 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRDYGIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRKHAPDRFVIKPANGSGG---KGILVI 92 (285)
T ss_pred CchhhccccCCHHHHHHHHHHhcCCCCceEEeccceEEecccccCHHHHHHHHHhccCCcEEEEeCCCCCc---cCEEEE
Confidence 56666777777777777777643321111122333222211111111 1222233358999999865554 444444
Q ss_pred eccCC------CC-------CCC-CCeeEEEeeecc
Q 022979 182 YDRFS------LS-------ELE-PPMLLQEFVNHG 203 (289)
Q Consensus 182 f~~~g------L~-------~L~-~P~VlQeFINH~ 203 (289)
...+| .. .+. .-.++||+|.=.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~liqe~i~qh 128 (285)
T PF14397_consen 93 DRRDGSEINRDISALYAGLESLGGKDYLIQERIEQH 128 (285)
T ss_pred EeecCcccccchhHHHHHHHhcCCccEEEEecccCC
Confidence 44332 11 122 269999998644
No 87
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=33.31 E-value=1.4e+02 Score=24.14 Aligned_cols=75 Identities=15% Similarity=0.162 Sum_probs=44.0
Q ss_pred cEEEEEEechhhhhhccchHHHHHHHhcCcEEEEccCC----------CCCCCC-CCceEEEecccchHHHHHHHHHHHh
Q 022979 28 RLVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQN----------RPLSDQ-GPFDVVLHKLSGMEWCKIIEDYRQK 96 (289)
Q Consensus 28 ~~~VGy~l~~kK~~~~~~~~l~~~~~~~gi~~v~iD~~----------~pl~~Q-gp~DvILHKltd~~~~~~l~~y~~~ 96 (289)
..+||..-.+.|.-...... ..++|++.++++++ ..|.+. ++.|+++-=+.-..+.+.+++-.+.
T Consensus 3 iAVvGaS~~~~~~g~~v~~~----l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~ 78 (116)
T PF13380_consen 3 IAVVGASDNPGKFGYRVLRN----LKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAAL 78 (116)
T ss_dssp EEEET--SSTTSHHHHHHHH----HHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHH
T ss_pred EEEEcccCCCCChHHHHHHH----HHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHc
Confidence 34666666555543333322 34499999999998 344433 6888888877777777777777777
Q ss_pred CCCeEEeCCh
Q 022979 97 HPEVTILDPP 106 (289)
Q Consensus 97 hP~v~ViDP~ 106 (289)
....+++=|=
T Consensus 79 g~~~v~~~~g 88 (116)
T PF13380_consen 79 GVKAVWLQPG 88 (116)
T ss_dssp T-SEEEE-TT
T ss_pred CCCEEEEEcc
Confidence 7776666654
No 88
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=32.81 E-value=89 Score=27.31 Aligned_cols=63 Identities=17% Similarity=0.189 Sum_probs=42.8
Q ss_pred EEEEechhhhh--hccchHHHHHHHhcCcEEEEc-cCCCCCCCCCCceEEEecccchHHHHHHHHHHHhCCCeEEeCChh
Q 022979 31 VGYALTSKKKK--SFLQPKLEILARNKGISFVAI-DQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPD 107 (289)
Q Consensus 31 VGy~l~~kK~~--~~~~~~l~~~~~~~gi~~v~i-D~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~ViDP~~ 107 (289)
||+.++...-. .-.+.++...|++.|+.+.-+ |-.. +.....+.+++.++++|+.+|+-|.+
T Consensus 1 I~vi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~---------------d~~~q~~~i~~~i~~~~d~Iiv~~~~ 65 (257)
T PF13407_consen 1 IGVIVPSMDNPFWQQVIKGAKAAAKELGYEVEIVFDAQN---------------DPEEQIEQIEQAISQGVDGIIVSPVD 65 (257)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHHHTCEEEEEEESTT---------------THHHHHHHHHHHHHTTESEEEEESSS
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeCCCCC---------------CHHHHHHHHHHHHHhcCCEEEecCCC
Confidence 45555555433 222335888899999998776 3321 23456778999999999988888876
Q ss_pred H
Q 022979 108 A 108 (289)
Q Consensus 108 ~ 108 (289)
.
T Consensus 66 ~ 66 (257)
T PF13407_consen 66 P 66 (257)
T ss_dssp T
T ss_pred H
Confidence 5
No 89
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=32.74 E-value=42 Score=28.47 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHh--CCCeEEeCChhHHhhh
Q 022979 85 EWCKIIEDYRQK--HPEVTILDPPDAIKHL 112 (289)
Q Consensus 85 ~~~~~l~~y~~~--hP~v~ViDP~~~i~~l 112 (289)
...+.+.++.++ .|+++||||+.++..-
T Consensus 127 ~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 127 EDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp HHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred HHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 345667777776 5899999999998875
No 90
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=32.49 E-value=84 Score=28.14 Aligned_cols=80 Identities=11% Similarity=0.116 Sum_probs=39.0
Q ss_pred ccEEEEEEechhhhhhccchHHHHHHHhcCcEEEEccCCCCCC--CCCCceEEEec-ccchHHHHHHHHHH-HhCCCeEE
Q 022979 27 ERLVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLS--DQGPFDVVLHK-LSGMEWCKIIEDYR-QKHPEVTI 102 (289)
Q Consensus 27 ~~~~VGy~l~~kK~~~~~~~~l~~~~~~~gi~~v~iD~~~pl~--~Qgp~DvILHK-ltd~~~~~~l~~y~-~~hP~v~V 102 (289)
+...|-|+-.|-....+. +.+..+....|.. +++-..... ...++.+.-=+ .....+.+.+.++. ...|+++|
T Consensus 40 ~~~~Vlyi~~Ed~~~~i~-~Rl~~i~~~~~~~--~~~~rl~~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvv 116 (239)
T cd01125 40 EPGRVVYLSAEDPREEIH-RRLEAILQHLEPD--DAGDRLFIDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVV 116 (239)
T ss_pred CCceEEEEECCCCHHHHH-HHHHHHHhhcCCc--CcccceEEeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEE
Confidence 567788888876655443 3565666554421 000000000 01122211100 11223444444443 56899999
Q ss_pred eCChhHH
Q 022979 103 LDPPDAI 109 (289)
Q Consensus 103 iDP~~~i 109 (289)
|||+.++
T Consensus 117 iDpl~~~ 123 (239)
T cd01125 117 IDPLVSF 123 (239)
T ss_pred ECChHHh
Confidence 9999876
No 91
>PF14972 Mito_morph_reg: Mitochondrial morphogenesis regulator
Probab=31.86 E-value=68 Score=28.35 Aligned_cols=33 Identities=12% Similarity=0.192 Sum_probs=27.4
Q ss_pred eEEEecccchH-----HHHHHHHHHHhCCCeEEeCChh
Q 022979 75 DVVLHKLSGME-----WCKIIEDYRQKHPEVTILDPPD 107 (289)
Q Consensus 75 DvILHKltd~~-----~~~~l~~y~~~hP~v~ViDP~~ 107 (289)
-+|||-++|-+ +...|++..++..+++||+|..
T Consensus 4 ~~vI~evYd~ena~e~FE~eLe~ALe~~~~~IVIEP~~ 41 (165)
T PF14972_consen 4 CAVIREVYDGENAHEQFEAELERALEAKVSYIVIEPTR 41 (165)
T ss_pred EEEEehHhcCcchHHHHHHHHHHHHHhCCCEEEECCcc
Confidence 36899999854 5567999999999999999963
No 92
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=31.23 E-value=1.8e+02 Score=23.28 Aligned_cols=79 Identities=11% Similarity=0.109 Sum_probs=46.0
Q ss_pred hccchHHHHHHHhcCcEEE--EccCCCCCCCCCCceEEEecccchHHHHHHHHHHH-hCCCeEEeCChhHHhhhccHHHH
Q 022979 42 SFLQPKLEILARNKGISFV--AIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQ-KHPEVTILDPPDAIKHLHNRQSM 118 (289)
Q Consensus 42 ~~~~~~l~~~~~~~gi~~v--~iD~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~-~hP~v~ViDP~~~i~~l~dR~~~ 118 (289)
++.-.++.++|+++|+++- ......--+....+|+||-=-.-.-..+.+++..+ ..-.|.+|||-+-....+|=...
T Consensus 14 s~la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~I~~~~Yg~~~~dg~~v 93 (99)
T cd05565 14 GLLANALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGIKLVTTTGKQYIELTRDPDGA 93 (99)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCCCEEEeCHHHHhHHhCCHHHH
Confidence 4455567888999998752 22222110122478999853222223345665554 45789999998776556775555
Q ss_pred HH
Q 022979 119 LQ 120 (289)
Q Consensus 119 l~ 120 (289)
++
T Consensus 94 l~ 95 (99)
T cd05565 94 LK 95 (99)
T ss_pred HH
Confidence 54
No 93
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=29.03 E-value=56 Score=31.93 Aligned_cols=69 Identities=13% Similarity=0.177 Sum_probs=48.9
Q ss_pred CCCCccEEEEEEechhhhhhccchH--HHHHHHhcCcEEEEccCCCCCCCCCCceEEEecccchH-HHHHHHHHHHhCCC
Q 022979 23 VLQPERLVVGYALTSKKKKSFLQPK--LEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGME-WCKIIEDYRQKHPE 99 (289)
Q Consensus 23 ~~~~~~~~VGy~l~~kK~~~~~~~~--l~~~~~~~gi~~v~iD~~~pl~~Qgp~DvILHKltd~~-~~~~l~~y~~~hP~ 99 (289)
....+..+||..|+.+..+++.... |...++..|....--+-+- +.. -..+++.-+.+.|+
T Consensus 20 aa~~~d~~IGis~~d~~~eRW~~D~~~~~~~~e~~g~k~~~q~A~~----------------~~~~Q~~qien~i~qg~~ 83 (341)
T COG4213 20 AAAAKDGVIGISMPDLRSERWIKDRDAFVKKAEALGAKVDVQSADG----------------DEEKQLAQIENMINQGVK 83 (341)
T ss_pred hhhccCCeEEEEcCChhHhhhhhhhHHHHHHHHhccchhhhhhhcc----------------ChhHHHHHHHHHHhcCCC
Confidence 4556788999999999999998765 6666666665442222211 222 24569999999999
Q ss_pred eEEeCChh
Q 022979 100 VTILDPPD 107 (289)
Q Consensus 100 v~ViDP~~ 107 (289)
++||.|.+
T Consensus 84 vlvi~a~d 91 (341)
T COG4213 84 VLVIGAID 91 (341)
T ss_pred EEEEEecc
Confidence 99999954
No 94
>PF06228 ChuX_HutX: Haem utilisation ChuX/HutX; InterPro: IPR010413 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 2OVI_A 2PH0_B 3FM2_B 2HQV_A.
Probab=26.72 E-value=55 Score=28.04 Aligned_cols=18 Identities=17% Similarity=0.438 Sum_probs=13.1
Q ss_pred EEEeeecc-eeEEEEEEEc
Q 022979 196 LQEFVNHG-GILFKIYIIG 213 (289)
Q Consensus 196 lQeFINH~-gvLfKVYVvG 213 (289)
-=.|+|++ ..+||||+=-
T Consensus 105 sv~F~~~~G~~~fKvflgR 123 (141)
T PF06228_consen 105 SVQFFDADGEAMFKVFLGR 123 (141)
T ss_dssp EEEEEETTSSEEEEEEE-B
T ss_pred EEEEECCCCCEEEEEEeec
Confidence 44677776 8999999853
No 95
>KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.66 E-value=48 Score=33.54 Aligned_cols=39 Identities=31% Similarity=0.490 Sum_probs=31.0
Q ss_pred EeccCCCCCCCCCeeEEEeeecceeEEEEEEEcceEEEE
Q 022979 181 AYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVV 219 (289)
Q Consensus 181 vf~~~gL~~L~~P~VlQeFINH~gvLfKVYVvGd~v~vv 219 (289)
.|.+.|+..+.||+.+|.=|.-|+.|||.=--|+-....
T Consensus 256 ~y~~~~ytEVtPPtmVQTQVEGGsTLFkldYyGEeAyLT 294 (545)
T KOG0555|consen 256 HYFERGYTEVTPPTMVQTQVEGGSTLFKLDYYGEEAYLT 294 (545)
T ss_pred HHHhcCceecCCCceEEEEecCcceEEeecccCchhhcc
Confidence 355667778899999999999999999986666554443
No 96
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=26.21 E-value=1.5e+02 Score=26.40 Aligned_cols=38 Identities=13% Similarity=0.280 Sum_probs=26.0
Q ss_pred HHHHHHHHHHh-CCCeEEeCChhHHhhhccHHHHHHHHh
Q 022979 86 WCKIIEDYRQK-HPEVTILDPPDAIKHLHNRQSMLQDVA 123 (289)
Q Consensus 86 ~~~~l~~y~~~-hP~v~ViDP~~~i~~l~dR~~~l~~l~ 123 (289)
..+.+.+.+++ .|+++|||++.+.....++..+.+.+.
T Consensus 108 ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~ 146 (234)
T PRK06067 108 LLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLT 146 (234)
T ss_pred HHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHH
Confidence 44455555554 889999999998876666665555443
No 97
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=25.61 E-value=5.2e+02 Score=23.61 Aligned_cols=65 Identities=20% Similarity=0.267 Sum_probs=43.5
Q ss_pred HhcCCccceEeeeccccCCCCceeeEEEeccCCC--------------------------CCCCCCeeEEEeeecce---
Q 022979 154 FEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSL--------------------------SELEPPMLLQEFVNHGG--- 204 (289)
Q Consensus 154 ~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL--------------------------~~L~~P~VlQeFINH~g--- 204 (289)
.-..|.-++|.||--+||+ ..|+.+...+ +.+++-+++-+|+...+
T Consensus 51 ~~~~Lp~~fViK~nhgsg~-----~~i~~dk~~~d~~~~~~~~~~wl~~~~~~~~~E~~Y~~i~prIivE~~l~~~~~~~ 125 (239)
T PF14305_consen 51 DFDSLPDKFVIKPNHGSGS-----NIIVRDKSKLDIEEAKKKLNRWLKKDYYYQSREWHYKNIKPRIIVEELLEDEDGKI 125 (239)
T ss_pred hhhcCCCCEEEEEecCCCc-----EEEEeCCcccCHHHHHHHHHHHhhhccccccccccCcCCCceEEEEeccccCCCCC
Confidence 3446778999999888883 2333333222 13355689999998873
Q ss_pred -eEEEEEEEcceEEEEEecC
Q 022979 205 -ILFKIYIIGETIKVVRRFS 223 (289)
Q Consensus 205 -vLfKVYVvGd~v~vv~R~S 223 (289)
+=||+||...++.+...-+
T Consensus 126 ~~DYKf~cF~G~~~~i~v~~ 145 (239)
T PF14305_consen 126 PRDYKFFCFNGKPKFIQVDS 145 (239)
T ss_pred cceEEEEEECCEEEEEEEEe
Confidence 4699999999766555433
No 98
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=25.12 E-value=2.3e+02 Score=22.06 Aligned_cols=41 Identities=20% Similarity=0.359 Sum_probs=26.1
Q ss_pred HHHHHHHhcCcEEEEccCCCCCCCCCCceEEEecccchHHHHHHHHHHHhCCCeEEeCC
Q 022979 47 KLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDP 105 (289)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~ViDP 105 (289)
-+..+.++.|++.+.++.+.| .+.+ ++...+..|+++.+--
T Consensus 18 ~~~~~l~~~G~~v~~l~~~~~---------------~~~~---~~~i~~~~pdiV~iS~ 58 (125)
T cd02065 18 IVAIALRDNGFEVIDLGVDVP---------------PEEI---VEAAKEEDADVVGLSA 58 (125)
T ss_pred HHHHHHHHCCCEEEEcCCCCC---------------HHHH---HHHHHHcCCCEEEEec
Confidence 356667889999988876544 2223 3334446788877753
No 99
>KOG2158 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=23.31 E-value=32 Score=35.32 Aligned_cols=49 Identities=18% Similarity=0.255 Sum_probs=30.1
Q ss_pred cceEeeeccccCCCCceeeEEEeccCCCCCCCCCeeEEEee-------ecceeEEEEEEE
Q 022979 160 LPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFV-------NHGGILFKIYII 212 (289)
Q Consensus 160 fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~L~~P~VlQeFI-------NH~gvLfKVYVv 212 (289)
=|+||||.-.+ .+-..+++.+.+-....+. .++|||| ||=-..+.||++
T Consensus 227 rtfivkpDsga---qg~giylisDir~~g~~Q~-~~vQeyV~~pLli~dkyKfd~rvy~l 282 (565)
T KOG2158|consen 227 RTFIVKPDSGA---QGSGIYLISDIREKGEYQN-KKVQEYVTYPLLISDKYKFDQRVYSL 282 (565)
T ss_pred ccEEECCCCCC---CCcceeeechhhhhhHHHH-HHHHHHhcccccccccceeeeeeeee
Confidence 39999997643 3345666643332222222 7888887 555666777776
No 100
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=22.78 E-value=1.4e+02 Score=26.86 Aligned_cols=27 Identities=7% Similarity=-0.081 Sum_probs=20.2
Q ss_pred HHHHHHHHHHh-CCCeEEeCChhHHhhh
Q 022979 86 WCKIIEDYRQK-HPEVTILDPPDAIKHL 112 (289)
Q Consensus 86 ~~~~l~~y~~~-hP~v~ViDP~~~i~~l 112 (289)
..+.++++... .|+++|||++..+...
T Consensus 128 i~~~i~~~~~~~~~~~vvID~l~~l~~~ 155 (271)
T cd01122 128 VLEKVRYMAVSHGIQHIIIDNLSIMVSD 155 (271)
T ss_pred HHHHHHHHHhcCCceEEEECCHHHHhcc
Confidence 44556666655 4999999999998754
No 101
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=22.36 E-value=80 Score=28.45 Aligned_cols=26 Identities=19% Similarity=0.397 Sum_probs=20.7
Q ss_pred CcEEEEccCCCCCCCCCCceEEEecc
Q 022979 56 GISFVAIDQNRPLSDQGPFDVVLHKL 81 (289)
Q Consensus 56 gi~~v~iD~~~pl~~Qgp~DvILHKl 81 (289)
++.++.-|-...+.+++|||.|+==.
T Consensus 124 nv~~~~gdg~~g~~~~apfD~I~v~~ 149 (209)
T PF01135_consen 124 NVEVVVGDGSEGWPEEAPFDRIIVTA 149 (209)
T ss_dssp SEEEEES-GGGTTGGG-SEEEEEESS
T ss_pred ceeEEEcchhhccccCCCcCEEEEee
Confidence 78999999999999999999998544
No 102
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=22.26 E-value=1.5e+02 Score=25.65 Aligned_cols=25 Identities=8% Similarity=0.224 Sum_probs=18.2
Q ss_pred HHHHHHHHHh-CCCeEEeCChhHHhh
Q 022979 87 CKIIEDYRQK-HPEVTILDPPDAIKH 111 (289)
Q Consensus 87 ~~~l~~y~~~-hP~v~ViDP~~~i~~ 111 (289)
.+.+.++..+ .|+++|||++.++..
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCcHHHhH
Confidence 4455555554 699999999998743
No 103
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=22.04 E-value=2.8e+02 Score=25.26 Aligned_cols=61 Identities=5% Similarity=0.134 Sum_probs=34.4
Q ss_pred EEEEechhh-hhhcc---chHHHHHHHhcCcEEEEccCCCCCCCCCCceEEEecccchHHHHHHHHHHHhCCCeEEeCCh
Q 022979 31 VGYALTSKK-KKSFL---QPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPP 106 (289)
Q Consensus 31 VGy~l~~kK-~~~~~---~~~l~~~~~~~gi~~v~iD~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~ViDP~ 106 (289)
||+.++-.. -++|+ +.++...+++.|+++..++...+ ...|.+.++++.++-++++|.+..
T Consensus 2 va~l~~g~~~D~~~n~~~~~G~~~~~~~~gv~~~~~e~~~~---------------~~~~~~~i~~~~~~g~dlIi~~g~ 66 (258)
T cd06353 2 VAFVYVGPIGDQGWNYAHDEGRKAAEKALGVEVTYVENVPE---------------GADAERVLRELAAQGYDLIFGTSF 66 (258)
T ss_pred EEEEEeCCCCccchhHHHHHHHHHHHHhcCCeEEEEecCCc---------------hHhHHHHHHHHHHcCCCEEEECch
Confidence 566665333 22333 34577777888998877764422 234555555555555555555443
No 104
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=21.49 E-value=1.4e+02 Score=23.36 Aligned_cols=62 Identities=18% Similarity=0.145 Sum_probs=33.9
Q ss_pred ccchHHHHHHHhcCcEE--EEccCCCCCCCCCCceEEEecccchHHH---HHHHHHHHh-CCCeEEeCChh
Q 022979 43 FLQPKLEILARNKGISF--VAIDQNRPLSDQGPFDVVLHKLSGMEWC---KIIEDYRQK-HPEVTILDPPD 107 (289)
Q Consensus 43 ~~~~~l~~~~~~~gi~~--v~iD~~~pl~~Qgp~DvILHKltd~~~~---~~l~~y~~~-hP~v~ViDP~~ 107 (289)
+.-.++.++++++|+++ ...+...--+.-..+|+|| +..+.+ ..+++..+. +=+|.+|||-+
T Consensus 18 ~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvil---l~pqi~~~~~~i~~~~~~~~ipv~~I~~~~ 85 (95)
T TIGR00853 18 LLVNKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVL---LAPQVAYMLPDLKKETDKKGIPVEVINGAQ 85 (95)
T ss_pred HHHHHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEE---ECchHHHHHHHHHHHhhhcCCCEEEeChhh
Confidence 33456788889999864 2333221101123678887 343333 335544433 45788899853
No 105
>PF04046 PSP: PSP; InterPro: IPR006568 PSP is a proline-rich domain of unknown function found in spliceosome associated proteins.
Probab=20.66 E-value=42 Score=23.77 Aligned_cols=13 Identities=38% Similarity=0.417 Sum_probs=11.0
Q ss_pred HHHHHHHHHhCCe
Q 022979 271 RLARELRHRLVNI 283 (289)
Q Consensus 271 ~iA~~LR~~LgL~ 283 (289)
.|+.+||++|||.
T Consensus 4 ~lS~~LR~ALg~~ 16 (48)
T PF04046_consen 4 KLSDELREALGMQ 16 (48)
T ss_pred ccCHHHHHHcCCC
Confidence 4678999999985
No 106
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=20.56 E-value=1.4e+02 Score=26.44 Aligned_cols=23 Identities=13% Similarity=0.371 Sum_probs=19.4
Q ss_pred CcEEEEccCCCCCCCCCCceEEE
Q 022979 56 GISFVAIDQNRPLSDQGPFDVVL 78 (289)
Q Consensus 56 gi~~v~iD~~~pl~~Qgp~DvIL 78 (289)
++.++.-|....+.+.++||+|+
T Consensus 128 ~v~~~~gd~~~~~~~~~~fD~I~ 150 (212)
T PRK13942 128 NVEVIVGDGTLGYEENAPYDRIY 150 (212)
T ss_pred CeEEEECCcccCCCcCCCcCEEE
Confidence 58899999887777788999997
No 107
>PF12058 DUF3539: Protein of unknown function (DUF3539); InterPro: IPR021926 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved NHP sequence motif. ; PDB: 3N5B_B 2XKO_C 2XG8_F.
Probab=20.54 E-value=99 Score=24.60 Aligned_cols=19 Identities=26% Similarity=0.702 Sum_probs=16.2
Q ss_pred Eeeecc--eeEEEEEEEcceE
Q 022979 198 EFVNHG--GILFKIYIIGETI 216 (289)
Q Consensus 198 eFINH~--gvLfKVYVvGd~v 216 (289)
.|+||- |-||.|..+||.=
T Consensus 4 ~YLNHPtFGlLy~Vc~~~e~~ 24 (88)
T PF12058_consen 4 TYLNHPTFGLLYRVCPVDEGQ 24 (88)
T ss_dssp -EEEETTTEEEEEEEEECTTE
T ss_pred ccccCCccchheeeeeCCCcc
Confidence 599998 9999999999753
Done!