Query 022979
Match_columns 289
No_of_seqs 131 out of 160
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 14:20:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022979.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022979hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2q7d_A Inositol-tetrakisphosph 100.0 1.2E-48 4.2E-53 371.7 27.1 258 26-286 16-290 (346)
2 1z2n_X Inositol 1,3,4-trisphos 99.9 3.4E-24 1.2E-28 197.1 20.2 247 25-286 8-278 (324)
3 3t7a_A Inositol pyrophosphate 99.1 5.6E-09 1.9E-13 98.2 17.5 232 23-286 2-271 (330)
4 1uc8_A LYSX, lysine biosynthes 99.0 2.9E-09 9.8E-14 94.4 13.7 159 47-219 15-191 (280)
5 3se7_A VANA; alpha-beta struct 98.8 6.4E-09 2.2E-13 97.1 8.6 125 72-214 89-222 (346)
6 3r5x_A D-alanine--D-alanine li 98.7 3.1E-08 1.1E-12 89.8 8.0 155 47-216 26-192 (307)
7 1i7n_A Synapsin II; synapse, p 98.7 1.1E-07 3.7E-12 89.1 11.8 175 73-286 68-260 (309)
8 1iow_A DD-ligase, DDLB, D-ALA\ 98.7 1.2E-07 4.2E-12 85.2 11.7 154 47-217 25-198 (306)
9 2p0a_A Synapsin-3, synapsin II 98.6 2.3E-07 7.7E-12 88.3 12.2 174 73-286 85-277 (344)
10 1pk8_A RAT synapsin I; ATP bin 98.5 4.2E-07 1.4E-11 88.6 11.6 174 73-286 180-372 (422)
11 4eg0_A D-alanine--D-alanine li 98.5 8.6E-07 2.9E-11 81.3 12.3 155 48-215 37-205 (317)
12 1gsa_A Glutathione synthetase; 98.3 5.3E-06 1.8E-10 74.3 11.0 153 47-218 23-220 (316)
13 3q2o_A Phosphoribosylaminoimid 98.2 2.1E-05 7.3E-10 74.0 14.0 155 45-214 26-204 (389)
14 3orq_A N5-carboxyaminoimidazol 98.1 8.6E-05 2.9E-09 70.0 16.9 150 47-212 26-200 (377)
15 3ln6_A Glutathione biosynthesi 98.0 2.3E-05 8E-10 81.2 11.2 148 47-226 432-592 (750)
16 2i87_A D-alanine-D-alanine lig 97.9 1.4E-05 4.7E-10 74.8 6.5 129 72-215 86-229 (364)
17 3ax6_A Phosphoribosylaminoimid 97.9 0.00016 5.4E-09 67.5 13.4 148 47-214 15-185 (380)
18 1ehi_A LMDDL2, D-alanine:D-lac 97.9 0.0001 3.5E-09 69.6 12.0 131 72-215 92-233 (377)
19 3k5i_A Phosphoribosyl-aminoimi 97.9 8.8E-05 3E-09 70.7 11.4 166 27-214 23-217 (403)
20 2fb9_A D-alanine:D-alanine lig 97.8 0.00013 4.4E-09 67.2 11.7 125 71-215 74-209 (322)
21 1e4e_A Vancomycin/teicoplanin 97.8 6.6E-05 2.3E-09 69.5 9.5 123 73-215 90-223 (343)
22 2pn1_A Carbamoylphosphate synt 97.8 0.00011 3.8E-09 66.8 10.7 125 73-214 72-202 (331)
23 4ffl_A PYLC; amino acid, biosy 97.7 0.00065 2.2E-08 62.9 15.0 140 47-215 15-176 (363)
24 3e5n_A D-alanine-D-alanine lig 97.7 0.00023 7.8E-09 67.7 12.0 177 24-215 18-256 (386)
25 3lwb_A D-alanine--D-alanine li 97.7 8.4E-05 2.9E-09 70.4 8.8 126 73-215 109-246 (373)
26 2z04_A Phosphoribosylaminoimid 97.7 8.3E-05 2.9E-09 68.9 8.6 147 47-214 15-184 (365)
27 3vot_A L-amino acid ligase, BL 97.7 0.0011 3.7E-08 62.9 16.4 141 47-202 19-203 (425)
28 3aw8_A PURK, phosphoribosylami 97.7 0.00012 4E-09 68.2 9.3 100 101-214 83-188 (369)
29 1kjq_A GART 2, phosphoribosylg 97.6 0.00016 5.3E-09 67.5 9.2 151 47-214 25-210 (391)
30 4fu0_A D-alanine--D-alanine li 97.6 3.7E-05 1.3E-09 72.0 4.6 132 73-218 97-238 (357)
31 3df7_A Putative ATP-grAsp supe 97.6 0.00046 1.6E-08 63.3 11.8 109 72-214 68-177 (305)
32 3k3p_A D-alanine--D-alanine li 97.6 0.00016 5.3E-09 69.0 8.8 175 28-215 37-259 (383)
33 3ln7_A Glutathione biosynthesi 97.6 0.00029 1E-08 73.1 11.1 152 46-227 436-599 (757)
34 4e4t_A Phosphoribosylaminoimid 97.6 0.00013 4.4E-09 70.2 7.5 152 46-214 48-228 (419)
35 3eth_A Phosphoribosylaminoimid 97.5 0.00091 3.1E-08 63.2 12.6 149 47-213 15-168 (355)
36 3i12_A D-alanine-D-alanine lig 97.5 0.00029 9.9E-09 66.1 9.1 127 72-215 97-237 (364)
37 2pvp_A D-alanine-D-alanine lig 97.4 0.0012 4.1E-08 62.4 11.3 129 73-216 107-247 (367)
38 2dwc_A PH0318, 433AA long hypo 97.3 0.00052 1.8E-08 65.2 8.3 150 47-213 33-217 (433)
39 3lp8_A Phosphoribosylamine-gly 97.3 0.00057 1.9E-08 66.0 8.6 109 90-214 99-221 (442)
40 3mjf_A Phosphoribosylamine--gl 97.3 0.00066 2.2E-08 65.3 8.9 134 47-214 58-205 (431)
41 2ip4_A PURD, phosphoribosylami 97.2 0.00048 1.6E-08 65.1 7.2 101 99-214 85-195 (417)
42 2xcl_A Phosphoribosylamine--gl 97.2 0.00032 1.1E-08 66.3 5.8 100 99-213 86-199 (422)
43 2yw2_A Phosphoribosylamine--gl 97.2 0.00041 1.4E-08 65.6 6.1 100 99-213 86-199 (424)
44 1a9x_A Carbamoyl phosphate syn 97.2 0.0017 5.9E-08 69.5 11.5 102 99-214 658-769 (1073)
45 1vkz_A Phosphoribosylamine--gl 97.2 0.00063 2.1E-08 64.6 7.3 99 101-214 93-204 (412)
46 3tqt_A D-alanine--D-alanine li 97.2 0.00073 2.5E-08 64.1 7.6 129 73-215 98-238 (372)
47 2yrx_A Phosphoribosylglycinami 97.1 0.00059 2E-08 65.5 6.7 100 99-213 107-220 (451)
48 2qk4_A Trifunctional purine bi 97.1 0.00076 2.6E-08 64.6 6.8 100 99-213 112-226 (452)
49 4dim_A Phosphoribosylglycinami 97.1 0.00037 1.3E-08 65.3 4.4 156 47-218 21-209 (403)
50 3vmm_A Alanine-anticapsin liga 97.0 0.0033 1.1E-07 61.4 10.7 124 46-203 92-234 (474)
51 2r85_A PURP protein PF1517; AT 97.0 0.0044 1.5E-07 55.9 10.8 130 47-202 15-178 (334)
52 3ouz_A Biotin carboxylase; str 97.0 0.00067 2.3E-08 64.9 5.2 102 99-214 103-220 (446)
53 2dzd_A Pyruvate carboxylase; b 96.7 0.0039 1.3E-07 59.7 8.1 102 99-214 104-221 (461)
54 3jrx_A Acetyl-COA carboxylase 96.5 0.011 3.9E-07 59.5 10.8 142 45-215 128-305 (587)
55 1a9x_A Carbamoyl phosphate syn 96.5 0.0037 1.3E-07 66.9 7.5 154 47-215 32-224 (1073)
56 2w70_A Biotin carboxylase; lig 96.4 0.0029 9.8E-08 60.4 5.2 101 99-213 99-216 (449)
57 1w96_A ACC, acetyl-coenzyme A 96.3 0.0057 1.9E-07 60.6 7.0 104 100-214 158-294 (554)
58 2pbz_A Hypothetical protein; N 96.2 0.0049 1.7E-07 57.6 5.4 131 47-201 15-167 (320)
59 1ulz_A Pyruvate carboxylase N- 96.1 0.0025 8.6E-08 60.8 2.7 102 99-214 98-215 (451)
60 3glk_A Acetyl-COA carboxylase 96.0 0.0078 2.7E-07 59.9 6.3 105 99-214 148-288 (540)
61 2vpq_A Acetyl-COA carboxylase; 95.8 0.005 1.7E-07 58.7 3.8 102 99-214 98-215 (451)
62 3n6r_A Propionyl-COA carboxyla 95.8 0.01 3.5E-07 60.7 6.2 109 91-214 92-216 (681)
63 3u9t_A MCC alpha, methylcroton 95.8 0.0082 2.8E-07 61.3 5.2 103 99-214 125-242 (675)
64 3hbl_A Pyruvate carboxylase; T 95.4 0.034 1.2E-06 60.1 8.4 102 99-214 102-219 (1150)
65 2cqy_A Propionyl-COA carboxyla 94.8 0.0024 8.3E-08 48.4 -1.7 65 133-203 20-99 (108)
66 2qf7_A Pyruvate carboxylase pr 94.7 0.056 1.9E-06 58.6 7.9 102 99-214 118-235 (1165)
67 3va7_A KLLA0E08119P; carboxyla 94.7 0.043 1.5E-06 59.8 6.9 109 91-214 121-244 (1236)
68 1wr2_A Hypothetical protein PH 89.8 0.13 4.4E-06 45.0 2.1 93 112-215 19-130 (238)
69 2r7k_A 5-formaminoimidazole-4- 88.9 0.64 2.2E-05 43.8 6.4 133 47-201 31-203 (361)
70 2io8_A Bifunctional glutathion 77.1 28 0.00096 35.1 12.9 175 30-224 381-601 (619)
71 3ufx_B Succinyl-COA synthetase 76.3 0.95 3.2E-05 43.3 1.8 79 133-215 16-108 (397)
72 2nu8_B SCS-beta, succinyl-COA 66.8 1.8 6E-05 41.2 1.2 80 133-216 16-117 (388)
73 1sn9_A BBAT, tetrameric beta-B 62.4 4.3 0.00015 23.7 1.8 21 263-283 4-24 (26)
74 3s99_A Basic membrane lipoprot 51.1 23 0.00079 32.8 5.9 93 22-116 20-132 (356)
75 3tig_A TTL protein; ATP-grAsp, 46.8 6.4 0.00022 37.5 1.3 56 155-213 143-210 (380)
76 2fp4_B Succinyl-COA ligase [GD 46.2 7.6 0.00026 37.0 1.8 95 133-231 16-142 (395)
77 3jwh_A HEN1; methyltransferase 44.4 1.3E+02 0.0043 24.5 9.2 51 56-106 85-142 (217)
78 2vob_A Trypanothione synthetas 39.1 2.4E+02 0.008 28.6 11.5 162 47-230 414-622 (652)
79 3l49_A ABC sugar (ribose) tran 37.0 1E+02 0.0035 25.9 7.5 65 26-106 3-70 (291)
80 3jwg_A HEN1, methyltransferase 33.0 93 0.0032 25.3 6.4 77 28-105 54-141 (219)
81 3uug_A Multiple sugar-binding 31.3 1.4E+02 0.0049 25.5 7.6 66 27-107 2-69 (330)
82 3gyb_A Transcriptional regulat 30.2 97 0.0033 25.9 6.1 74 26-106 3-88 (280)
83 2l2q_A PTS system, cellobiose- 26.9 1.5E+02 0.005 22.4 6.1 79 43-124 19-101 (109)
84 3i53_A O-methyltransferase; CO 26.1 1.5E+02 0.0051 26.1 6.9 50 55-106 219-276 (332)
85 3o1i_D Periplasmic protein TOR 25.7 1.3E+02 0.0045 25.3 6.2 68 25-107 2-73 (304)
86 3dp7_A SAM-dependent methyltra 24.5 95 0.0032 28.1 5.3 49 56-106 230-289 (363)
87 3ou2_A SAM-dependent methyltra 24.2 1.5E+02 0.005 23.7 6.0 67 29-105 70-147 (218)
88 1vbf_A 231AA long hypothetical 23.6 49 0.0017 27.3 3.0 25 56-80 117-141 (231)
89 1mhx_A Immunoglobulin-binding 22.3 98 0.0033 21.8 3.7 24 202-225 7-31 (65)
90 1vlm_A SAM-dependent methyltra 22.1 1E+02 0.0035 25.2 4.7 34 47-80 76-109 (219)
91 3mi6_A Alpha-galactosidase; NE 22.1 67 0.0023 33.2 4.1 63 39-102 455-524 (745)
92 3nbm_A PTS system, lactose-spe 20.9 1.2E+02 0.0042 23.2 4.6 78 42-123 20-104 (108)
93 3jy6_A Transcriptional regulat 20.9 1.9E+02 0.0064 24.1 6.2 41 25-65 4-46 (276)
94 1jg1_A PIMT;, protein-L-isoasp 20.2 63 0.0022 27.0 3.0 24 56-79 141-164 (235)
No 1
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=100.00 E-value=1.2e-48 Score=371.71 Aligned_cols=258 Identities=30% Similarity=0.512 Sum_probs=223.2
Q ss_pred CccEEEEEEechhhhhhccchHHHHHHHhcCcEEEEccCCCCCCCCCCceEEEecccc------------hHHHHHHHHH
Q 022979 26 PERLVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSG------------MEWCKIIEDY 93 (289)
Q Consensus 26 ~~~~~VGy~l~~kK~~~~~~~~l~~~~~~~gi~~v~iD~~~pl~~Qgp~DvILHKltd------------~~~~~~l~~y 93 (289)
+++++|||||++||+++|++++|.+.++++|+++++||++.++.+|++||+||||+++ ..|.+.|++|
T Consensus 16 ~~~~~vG~~l~~kk~~~~~~~~l~~al~~~G~~~~~iD~~~~~~~~~~~Dvvi~~l~~~~~ea~~~d~~~~~~~~~l~~~ 95 (346)
T 2q7d_A 16 LKGKRVGYWLSEKKIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQNDSQSLELVHRFQEY 95 (346)
T ss_dssp GTTCEEEEECCHHHHHHHTHHHHHHHHHTTTCEEEECCTTSCSGGGCCCSEEEECCHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCceEEEEEECcccchhhhHHHHHHHHHhCCcEEEEcccccchhhcCCCCEEEeCCcccccccccCchhHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999988 3688999999
Q ss_pred HHhCCCeEEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCC-CCCchhHHHhcCCccceEeeeccccCC
Q 022979 94 RQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKD-SLSIPDQVFEAGLKLPLVAKPLVVDGS 172 (289)
Q Consensus 94 ~~~hP~v~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~-~~~~~~~l~~agl~fP~I~Kp~vA~Gs 172 (289)
...||+++||||+++++.+.||..|++.|.+.....+.+.|.+|+++++.+. .+++.+.+...++.||+|+||+.++||
T Consensus 96 ~~~~~gv~vinp~~ai~~~~dk~~~~~~L~k~~~~~~~~gIp~P~t~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~Gs 175 (346)
T 2q7d_A 96 IDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGT 175 (346)
T ss_dssp HHHCTTSEEESCHHHHHHTTBHHHHHHHHHHHHHHHCBTTEECCCEEEECSCCCTTHHHHHHHTTCCSSEEEECSBCSST
T ss_pred HHHCCCeEEcCCHHHHHHhhhHHHHHHHHHhhcccccCCCCCCCCEEEEeCCCHHHHHHHHHhcCCCCCEEEEecCCCcc
Confidence 9999999999999999999999999999998644334567999999999643 355666777789999999999999999
Q ss_pred CCceeeEEEeccCCCCCCCCCeeEEEeeecceeEEEEEEEcceEEEEEecCCCCCchhhhhccceeeeeCC--ccCCCcC
Q 022979 173 AKSHELFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPR--VSSAAAS 250 (289)
Q Consensus 173 ~~SH~Maivf~~~gL~~L~~P~VlQeFINH~gvLfKVYVvGd~v~vv~R~SLpn~~~~~~~~~~~~~~f~~--vS~~~~~ 250 (289)
+ ||.|++|++.++|..++.|+++||||||+|+.||||||||++.++.|+|+||+..+. ...+.+.|++ +++.+++
T Consensus 176 ~-s~~v~~v~~~~~l~~~~~~~lvQefI~~~G~dirv~VvG~~v~~~~r~sl~~~~~~~--~~~~~~~f~s~~~~~~g~~ 252 (346)
T 2q7d_A 176 N-SHEMAIVFNQEGLNAIQPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGT--SDRESIFFNSHNVSKPESS 252 (346)
T ss_dssp T-CCEEEEECSGGGTTC--CCEEEEECCCCTTEEEEEEEETTEEEEEEEECCCCCC------CCCCEEEEGGGTSSTTCC
T ss_pred e-eeeeEEecCHHHHHhcCCCEEEEEeeCCCCeEEEEEEECCEEEEEEEecCCCcCcCc--cccccccccceeeccCCcc
Confidence 8 999999999999999999999999999999999999999999999999999987764 2346777776 7777766
Q ss_pred CCcCCCCC--CCCCCCCHHHHHHHHHHHHHHhCCeEee
Q 022979 251 ADDADLDP--GIAELPPRPLLERLARELRHRLVNILVF 286 (289)
Q Consensus 251 ~~~~~ld~--~~~e~p~~~~l~~iA~~LR~~LgL~LFG 286 (289)
+....+++ ..+++|+.+.++++|..+++.|||++||
T Consensus 253 ~~~~~~~~~~~~~~~~~~~el~~lA~~a~~alGl~~~g 290 (346)
T 2q7d_A 253 SVLTELDKIEGVFERPSDEVIRELSRALRQALGVSLFG 290 (346)
T ss_dssp CGGGCCSCCCSCCCCCCHHHHHHHHHHHHHHHCCCEEE
T ss_pred ccccccccccccccCCChHHHHHHHHHHHHHhCCceEe
Confidence 55444332 2356788899999999999999999998
No 2
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=99.92 E-value=3.4e-24 Score=197.11 Aligned_cols=247 Identities=18% Similarity=0.271 Sum_probs=189.6
Q ss_pred CCccEEEEEEechhhhhhccchHHHHHHHhcCcEE--EEccCCCCCCCCC-CceEEEecccch--HHHHHHHHHHHhCCC
Q 022979 25 QPERLVVGYALTSKKKKSFLQPKLEILARNKGISF--VAIDQNRPLSDQG-PFDVVLHKLSGM--EWCKIIEDYRQKHPE 99 (289)
Q Consensus 25 ~~~~~~VGy~l~~kK~~~~~~~~l~~~~~~~gi~~--v~iD~~~pl~~Qg-p~DvILHKltd~--~~~~~l~~y~~~hP~ 99 (289)
.++..+||++..++++ ++ .+...++++|+++ +.+|.+.|+..++ ++|+|+|+++++ .+.+.++.+...++.
T Consensus 8 ~~~~m~i~il~~~~~~-s~---~l~~al~~~G~~v~~~~~d~~~~~~~~~~~~d~v~~~~~~~~~~~~~~l~~~~~~~~g 83 (324)
T 1z2n_X 8 TKQTVSLFIWLPESKQ-KT---LFISTKNHTQFELNNIIFDVTLSTELPDKEPNAIITKRTHPVGKMADEMRKYEKDHPK 83 (324)
T ss_dssp --CEEEEEEECCHHHH-HH---HBSSCCSEEEEEETTEEEEEEEESSCCSSCCSEEEECCSCSSSHHHHHHHHHHHHCTT
T ss_pred cCCcEEEEEEEchhhh-hh---hHHHHHHhcCcEEEEEEecCCCCccccCCCceEEEEeccchHHHHHHHHHHHHHhCCC
Confidence 3456789999998887 54 5666678899999 9999987888777 899999999886 577888999888889
Q ss_pred eEEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeE
Q 022979 100 VTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELF 179 (289)
Q Consensus 100 v~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Ma 179 (289)
+.+++++++++...||..+.+.+++. .|.+|+++.++. .+++.+.+...|+.||+|+||..++|+..||.|.
T Consensus 84 ~~~~~~~~~~~~~~dK~~~~~~l~~~-------gi~~P~~~~~~~-~~~~~~~~~~~~~~~P~vvKP~~g~g~~~s~gv~ 155 (324)
T 1z2n_X 84 VLFLESSAIHDMMSSREEINALLIKN-------NIPIPNSFSVKS-KEEVIQLLQSKQLILPFIVKPENAQGTFNAHQMK 155 (324)
T ss_dssp SEEETCHHHHHHHTBHHHHHHHHHHT-------TCCCSCEEEESS-HHHHHHHHHTTCSCSSEEEEESBCSSSSGGGEEE
T ss_pred CeEeCCHHHHHHHhCHHHHHHHHHHC-------CCCCCCEEEeCC-HHHHHHHHHHcCCCCCEEEeeCCCCCCccceeeE
Confidence 99999999999999999999999864 367899998852 2223334445578899999999988888889999
Q ss_pred EEeccCCCCCCCCCeeEEEeeecceeEEEEEEEcceEEEEEecCCCCCchhhhhccceeeeeCCc------------cCC
Q 022979 180 LAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRV------------SSA 247 (289)
Q Consensus 180 ivf~~~gL~~L~~P~VlQeFINH~gvLfKVYVvGd~v~vv~R~SLpn~~~~~~~~~~~~~~f~~v------------S~~ 247 (289)
++.+.+.|..+..|+++||||++.|.-|.|||+|+.+..+.|++++|+..+... ....|+.. ++.
T Consensus 156 ~v~~~~~l~~~~~~~lvqe~i~~~g~~~~v~v~g~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~p~~~~~k~ 232 (324)
T 1z2n_X 156 IVLEQEGIDDIHFPCLCQHYINHNNKIVKVFCIGNTLKWQTRTSLPNVHRCGIK---SVDFNNQHLEDILSWPEGVIDKQ 232 (324)
T ss_dssp EECSGGGGTTCCSSEEEEECCCCTTCEEEEEEETTEEEEEEECCCCCCCCSSCC---EEEEETTBGGGGGGSCTTSSCHH
T ss_pred EEeCHHHHhhcCCCEEEEEccCCCCcEEEEEEECCEEEEEEecCcccccCCCcc---ceeeccccchhhhcccccccccc
Confidence 999999999999999999999999999999999999999999999988665321 12334332 221
Q ss_pred C----cCCCcC-CC--CCCCCCCCCHHHHHHHHHHHHHHhCCeEee
Q 022979 248 A----ASADDA-DL--DPGIAELPPRPLLERLARELRHRLVNILVF 286 (289)
Q Consensus 248 ~----~~~~~~-~l--d~~~~e~p~~~~l~~iA~~LR~~LgL~LFG 286 (289)
. +..++. .. .+.....++.+.+.++|..+.+.||+.++|
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~~~lg~~~~~ 278 (324)
T 1z2n_X 233 DIIENSANRFGSKILEDPILLNLTSEAEMRDLAYKVRCALGVQLCG 278 (324)
T ss_dssp HHHHHHTTTTCCCBCSCTTTTTSCCHHHHHHHHHHHHHHHTCSEEE
T ss_pred ccccccccchhhccccCCccccCCCHHHHHHHHHHHHHHhCCcEEe
Confidence 1 001110 00 111112233367999999999999999665
No 3
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=99.06 E-value=5.6e-09 Score=98.22 Aligned_cols=232 Identities=17% Similarity=0.202 Sum_probs=143.6
Q ss_pred CCCCccEEEEEEechhhhhhccchH-HHHHHHhcCcEEEEcc----CCCCCCCCCCceEEEecccchHHHHHHHHHHHhC
Q 022979 23 VLQPERLVVGYALTSKKKKSFLQPK-LEILARNKGISFVAID----QNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKH 97 (289)
Q Consensus 23 ~~~~~~~~VGy~l~~kK~~~~~~~~-l~~~~~~~gi~~v~iD----~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~~h 97 (289)
+++.+.++||.|--+||-+|=--+. |-.+.+..-++.+--. ++.|.++=--.|++|--.++-==-+...+|.+..
T Consensus 2 ~~~~~~~~~gvcam~~k~~s~pm~~il~rl~~~~~f~~iif~d~~il~~~ve~wp~~d~lisf~s~gfpl~kai~y~~lr 81 (330)
T 3t7a_A 2 SFTERQIVVGICSMAKKSKSKPMKEILERISLFKYITVVVFEEEVILNEPVENWPLCDCLISFHSKGFPLDKAVAYAKLR 81 (330)
T ss_dssp ----CCEEEEEESCHHHHTSHHHHHHHHHHTTSTTEEEEECCHHHHHHSCGGGSCCCSEEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCCCceEEEEEecccccccHHHHHHHHHhcccCcEEEEEeCCCceecCCcccCCcCCEEEEeccCCCcHHHHHHHHHHh
Confidence 3556789999999999976644434 4444333334443222 2345555556777777666531123456666653
Q ss_pred CCeEEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCC-----C---chhHHH--hcCCccceEeeec
Q 022979 98 PEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSL-----S---IPDQVF--EAGLKLPLVAKPL 167 (289)
Q Consensus 98 P~v~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~-----~---~~~~l~--~agl~fP~I~Kp~ 167 (289)
...+|..+.++..+.||...++.|++. .|.+|+.++++.+.. . ..+.+. ...+.+|+|.||+
T Consensus 82 -~p~~INd~~~q~~~~DK~~~~~iL~~~-------gIPtP~t~~~~rd~~~~~~~~~~e~~d~i~~~g~~l~kPfVeKPv 153 (330)
T 3t7a_A 82 -NPFVINDLNMQYLIQDRREVYSILQAE-------GILLPRYAILNRDPNNPKECNLIEGEDHVEVNGEVFQKPFVEKPV 153 (330)
T ss_dssp -CCEESBCSTHHHHHTBHHHHHHHHHHT-------TCCCCCEEEECCBTTBGGGSSEEECSSEEEETTEEEESSEEEEES
T ss_pred -CCceeCCHHHHHHHHHHHHHHHHHHHc-------CCCCCCEEEEeCCCCCccccceeccchhhhhccccccCCeeEccc
Confidence 567899999999999999999999853 578899999865431 0 011122 2346799999999
Q ss_pred cccCCCCceeeEEEeccC----------------------CCCCCCCCeeEEEeeecceeEEEEEEEcceE-EEEEecCC
Q 022979 168 VVDGSAKSHELFLAYDRF----------------------SLSELEPPMLLQEFVNHGGILFKIYIIGETI-KVVRRFSL 224 (289)
Q Consensus 168 vA~Gs~~SH~Maivf~~~----------------------gL~~L~~P~VlQeFINH~gvLfKVYVvGd~v-~vv~R~SL 224 (289)
-+. -|...|-|... ..-.-+...++||||..+|.=.||||||+.+ ....|.|-
T Consensus 154 ~Gs----dhni~iyyp~s~GgG~~RLfrki~n~sS~~~~~~~vr~~~~~i~QEFI~~~G~DIRv~vVG~~vv~Am~R~sp 229 (330)
T 3t7a_A 154 SAE----DHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPESNVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSP 229 (330)
T ss_dssp BTT----CCCCEEECCGGGTCCEEEEEEEETTEEEEEESCCSCCSSSCEEEEECCCCSSEEEEEEEESTTCEEEEEEECT
T ss_pred ccc----cCcceeecccccCCchhhhhhhhCCcccccChhhhhccCCcEEEEeccCCCCceEEEEEECCEEEEEEEEeCC
Confidence 843 25555544322 1112245799999999999999999999777 56888773
Q ss_pred CCCchhhhhccceeeeeCCccCCCcCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHhCCeEee
Q 022979 225 PNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLVNILVF 286 (289)
Q Consensus 225 pn~~~~~~~~~~~~~~f~~vS~~~~~~~~~~ld~~~~e~p~~~~l~~iA~~LR~~LgL~LFG 286 (289)
. ..++ |.. +. +.... ....++ .+..+++|....+.+|+..-|
T Consensus 230 -~-~~G~-------~r~----N~----~gG~~-~~~v~L--t~eek~iA~kaa~a~G~~v~G 271 (330)
T 3t7a_A 230 -A-LDGK-------VER----DS----EGKEV-RYPVIL--NAREKLIAWKVCLAFKQTVCG 271 (330)
T ss_dssp -T-SSCB-------CCB----CT----TSCBC-CEECCC--CHHHHHHHHHHHHHTTBSEEE
T ss_pred -C-CCCc-------EEE----cC----CCCce-eeeecC--CHHHHHHHHHHHHHhCCceEE
Confidence 1 1111 111 11 11110 001122 245799999999999998766
No 4
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=99.03 E-value=2.9e-09 Score=94.38 Aligned_cols=159 Identities=14% Similarity=0.188 Sum_probs=109.8
Q ss_pred HHHHHHHhcCcEEEEccCCCCCCC-------CCCceEEEecccchHHHHHHHHHHHhCCCeEEeCChhHHhhhccHHHHH
Q 022979 47 KLEILARNKGISFVAIDQNRPLSD-------QGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSML 119 (289)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~pl~~-------Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~ViDP~~~i~~l~dR~~~l 119 (289)
.+...+++.|+.++.+|.+..... ...+|++++..........+.++.++. ++.++.|+++++...|+..+.
T Consensus 15 ~~~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~dK~~~~ 93 (280)
T 1uc8_A 15 MLFERAEALGLPYKKVYVPALPMVLGERPKELEGVTVALERCVSQSRGLAAARYLTAL-GIPVVNRPEVIEACGDKWATS 93 (280)
T ss_dssp HHHHHHHHHTCCEEEEEGGGCCEETTBCCGGGTTCCEEEECCSSHHHHHHHHHHHHHT-TCCEESCHHHHHHHHBHHHHH
T ss_pred HHHHHHHHcCCcEEEEehhhceeeccCCCcccCCCCEEEECCccchhhHHHHHHHHHC-CCceeCCHHHHHHhCCHHHHH
Confidence 477778899999999987644311 236895555543322223455555555 567778999999999999999
Q ss_pred HHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEeccCCCCC-------C--
Q 022979 120 QDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------L-- 190 (289)
Q Consensus 120 ~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~-------L-- 190 (289)
+.+++. .+.+|++..+++ .+++.+.+. .+.||+|+||....|+ ..+.++.+++.|.+ +
T Consensus 94 ~~l~~~-------gi~~p~~~~~~~-~~~~~~~~~--~~~~p~vvKp~~g~~~---~gv~~v~~~~el~~~~~~~~~~~~ 160 (280)
T 1uc8_A 94 VALAKA-------GLPQPKTALATD-REEALRLME--AFGYPVVLKPVIGSWG---RLLAXXXXXXXXXXXXXXKEVLGG 160 (280)
T ss_dssp HHHHHT-------TCCCCCEEEESS-HHHHHHHHH--HHCSSEEEECSBCCBC---SHHHHHHHHHC------------C
T ss_pred HHHHHc-------CcCCCCeEeeCC-HHHHHHHHH--HhCCCEEEEECCCCCc---ccceecccccccchhhhhHhhhcc
Confidence 998764 356899988852 112222222 3569999999997774 55556666665542 2
Q ss_pred --CCCeeEEEeeecceeEEEEEEEcceEEEE
Q 022979 191 --EPPMLLQEFVNHGGILFKIYIIGETIKVV 219 (289)
Q Consensus 191 --~~P~VlQeFINH~gvLfKVYVvGd~v~vv 219 (289)
..++++||||+..+.=+.++|+|+.+...
T Consensus 161 ~~~~~~lvqe~i~~~~~e~~v~v~~~~~~~~ 191 (280)
T 1uc8_A 161 FQHQLFYIQEYVEKPGRDIRVFVVGERAIAA 191 (280)
T ss_dssp TTTTCEEEEECCCCSSCCEEEEEETTEEEEE
T ss_pred cCCCcEEEEeccCCCCceEEEEEECCEEEEE
Confidence 46899999999878889999999987543
No 5
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=98.84 E-value=6.4e-09 Score=97.10 Aligned_cols=125 Identities=16% Similarity=0.132 Sum_probs=92.6
Q ss_pred CCceEEEecccchHHH-HHHHHHHHhCCCeEEeCC-hhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCc
Q 022979 72 GPFDVVLHKLSGMEWC-KIIEDYRQKHPEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSI 149 (289)
Q Consensus 72 gp~DvILHKltd~~~~-~~l~~y~~~hP~v~ViDP-~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~ 149 (289)
..+|+|+.-+.+.... ..+|.+.+.. ++.++-| +.++...+|+..+.+.+++. .|.+|++..++.....
T Consensus 89 ~~~D~v~~~lhG~~gedg~iq~~le~~-gip~~g~~~~a~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~~~- 159 (346)
T 3se7_A 89 IRLDLVLPVLHGKLGEDGAIQGLLELS-GIPYVGCDIQSSALCMDKSLTYLVARSA-------GIATPNFWTVTADEKI- 159 (346)
T ss_dssp EECSEEEECCCSTTTTSSHHHHHHHHH-CCCBSSCCHHHHHHHHSHHHHHHHHHHT-------TCBCCCEEEEETTSCC-
T ss_pred cCCCEEEEccCCCCCCChHHHHHHHHc-CCCeeCcCHHHHHHHhCHHHHHHHHHHc-------CcCcCCEEEEcCcHHH-
Confidence 3689998888654211 1345555443 5666665 88999999999999998754 4778999988543211
Q ss_pred hhHHHhcCCccceEeeeccccCCCCceeeEEEeccCCCCC-------CCCCeeEEEeeecceeEEEEEEEcc
Q 022979 150 PDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 150 ~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~-------L~~P~VlQeFINH~gvLfKVYVvGd 214 (289)
....+.||+|+||....| |..+.++.+++.|.. ...++++||||+ |.-|-|.|+|+
T Consensus 160 ----~~~~lg~PvvvKP~~~~~---s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~--G~E~~v~vl~~ 222 (346)
T 3se7_A 160 ----PTDQLTYPVFVKPARSGS---SFGVSKVAREEDLQGAVEAAREYDSKVLIEEAVI--GTEIGCAVMGN 222 (346)
T ss_dssp ----CTTTCCSSEEEEESSCCT---TTTCEEECSHHHHHHHHHHHTTTCSEEEEEECCC--SEEEEEEEEEE
T ss_pred ----HHHhcCCCEEEEeCCCCC---CcCEEEECCHHHHHHHHHHHHhCCCcEEEEeCcC--CEEEEEEEEec
Confidence 134689999999998766 466788999887742 357899999999 78999999998
No 6
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=98.69 E-value=3.1e-08 Score=89.80 Aligned_cols=155 Identities=14% Similarity=0.129 Sum_probs=109.3
Q ss_pred HHHHHHHhcCcEEEEccCCCC---CCCCCCceEEEecccchHHH-HHHHHHHHhCCCeEEeCC-hhHHhhhccHHHHHHH
Q 022979 47 KLEILARNKGISFVAIDQNRP---LSDQGPFDVVLHKLSGMEWC-KIIEDYRQKHPEVTILDP-PDAIKHLHNRQSMLQD 121 (289)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~p---l~~Qgp~DvILHKltd~~~~-~~l~~y~~~hP~v~ViDP-~~~i~~l~dR~~~l~~ 121 (289)
.+...+++.|++.+.+|.+.. +.....+|+|+.-+.+.... ..++.+.+.. ++.++-| +++++...|+..+.+.
T Consensus 26 ~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~~~~~~ge~~~~~~~le~~-gi~~~g~~~~~~~~~~dK~~~~~~ 104 (307)
T 3r5x_A 26 EMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHGKYGEDGTVQGTLESL-GIPYSGSNMLSSGICMDKNISKKI 104 (307)
T ss_dssp HHHHHSCTTTEEEEEEECSSGGGHHHHTTTCSEEEECCCSHHHHSSHHHHHHHHH-TCCBSSSCHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHCCCEEEEEcccCchhHHHhccCCCEEEEeCCCCCCcHHHHHHHHHHc-CCCeeCcCHHHHHHHcCHHHHHHH
Confidence 366666788999999999843 33335899999987554211 1233333333 5777765 8999999999999999
Q ss_pred HhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEeccCCCCCC-------CCCe
Q 022979 122 VADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPM 194 (289)
Q Consensus 122 l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~L-------~~P~ 194 (289)
+++. .|.+|++..++.. ++.... ....+.||+|+||....| |..+.++.+.+.|... ..++
T Consensus 105 l~~~-------Gip~p~~~~~~~~-~~~~~~-~~~~~~~P~vvKP~~~~~---s~Gv~~v~~~~el~~~~~~~~~~~~~~ 172 (307)
T 3r5x_A 105 LRYE-------GIETPDWIELTKM-EDLNFD-ELDKLGFPLVVKPNSGGS---SVGVKIVYDKDELISMLETVFEWDSEV 172 (307)
T ss_dssp HHHT-------TCCCCCEEEEESS-SCCCHH-HHHHHCSSEEEEECC-------CCCEEECSHHHHHHHHHHHHHHCSEE
T ss_pred HHHC-------CCCCCCEEEEeCh-hhhhHH-HHHhcCCCEEEEeCCCCC---CCCEEEeCCHHHHHHHHHHHHhcCCCE
Confidence 8754 4678999988642 222221 123468999999998766 4677889998877532 5789
Q ss_pred eEEEeeecceeEEEEEEEcceE
Q 022979 195 LLQEFVNHGGILFKIYIIGETI 216 (289)
Q Consensus 195 VlQeFINH~gvLfKVYVvGd~v 216 (289)
++||||+ |.-|-|.|+|+.+
T Consensus 173 lvee~i~--G~e~~v~v~~g~~ 192 (307)
T 3r5x_A 173 VIEKYIK--GEEITCSIFDGKQ 192 (307)
T ss_dssp EEEECCC--SEEEEEEEETTEE
T ss_pred EEECCcC--CEEEEEEEECCEE
Confidence 9999999 6899999999966
No 7
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=98.69 E-value=1.1e-07 Score=89.15 Aligned_cols=175 Identities=11% Similarity=0.125 Sum_probs=117.0
Q ss_pred CceEEEecccch------HHHHHHHHHHHhCCCeEEeCChhHHhhhccH----HHHHHHHhhcccCCCCCceecCceEEE
Q 022979 73 PFDVVLHKLSGM------EWCKIIEDYRQKHPEVTILDPPDAIKHLHNR----QSMLQDVADLNLSDCNGKVRVPRQMVI 142 (289)
Q Consensus 73 p~DvILHKltd~------~~~~~l~~y~~~hP~v~ViDP~~~i~~l~dR----~~~l~~l~~l~~~~~~~~i~~P~~v~i 142 (289)
.+|++|=+.... .|+..+. +.+. -.+++|+++++|....|+ ..+++.+..+... .+..|.....
T Consensus 68 ~~D~vi~R~~~~~~~~~~~~r~vl~-~le~-~GvpviN~~~sI~~~~DK~~~~~~~~~~l~~~gi~----~~P~~~~~~~ 141 (309)
T 1i7n_A 68 RPDFVLIRQHAFGMAENEDFRHLVI-GMQY-AGLPSINSLESIYNFCDKPWVFAQMVAIFKTLGGE----KFPLIEQTYY 141 (309)
T ss_dssp CCSEEEECSCCCCSSTTCCCHHHHH-HHHH-TTCCEESCHHHHHHTSSHHHHHHHHHHHHHHHCTT----TSCBCCCEEE
T ss_pred cCCEEEEecccccccccchHHHHHH-HHHH-CCccccCCHHHHHHhCCccHHHHHHHHHHHhCCCC----CCCCCCEEee
Confidence 479888777443 2453333 3343 389999999999999999 5666766654331 2232233323
Q ss_pred cCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEeccCCCCCC-------CCCeeEEEeeecceeEEEEEEEcce
Q 022979 143 TKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGET 215 (289)
Q Consensus 143 ~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~L-------~~P~VlQeFINH~gvLfKVYVvGd~ 215 (289)
. +. .+.+ ..+.||+|+||+.+++ ...+.++-+++.+.++ +..+++||||+ .|.=+.|||||++
T Consensus 142 ~-~~---~~~~--~~~g~PvVvK~~~Gs~---G~GV~lv~~~~~~~~~~~~~~~~~~~~~vQefI~-~g~DiRv~VvGg~ 211 (309)
T 1i7n_A 142 P-NH---REML--TLPTFPVVVKIGHAHS---GMGKVKVENHYDFQDIASVVALTQTYATAEPFID-AKYDIRVQKIGNN 211 (309)
T ss_dssp S-SG---GGGS--SCCCSSEEEEESSCST---TTTEEEECSHHHHHHHHHHHHHHTCCEEEEECCC-EEEEEEEEEETTE
T ss_pred C-Ch---hhhh--hccCCCEEEEeCCCCc---eeCeEEECCHHHHHHHHHHHhccCCeEEEEeecC-CCceEEEEEECCE
Confidence 2 21 1222 2367999999999554 5779999999877532 56789999999 7999999999999
Q ss_pred EEEEEecCCCCCchhhhhccceeeeeCCccCCCcCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCeEee
Q 022979 216 IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRL-VNILVF 286 (289)
Q Consensus 216 v~vv~R~SLpn~~~~~~~~~~~~~~f~~vS~~~~~~~~~~ld~~~~e~p~~~~l~~iA~~LR~~L-gL~LFG 286 (289)
+....|.|.. +.... ++ + .+ . ....+..+..+++|....+.+ |+.+.|
T Consensus 212 v~a~~Rr~~~----g~wrt--------N~---~-~~---~----~e~~~l~~e~~~la~~A~~a~gGldi~G 260 (309)
T 1i7n_A 212 YKAYMRTSIS----GNWKT--------NT---G-SA---M----LEQIAMSDRYKLWVDACSEMFGGLDICA 260 (309)
T ss_dssp EEEEEEESSC----TTTSC--------SC---C-CS---S----EEEECCCHHHHHHHHHHTTGGGCCSEEE
T ss_pred EEEEEEEcCC----CCCee--------cC---C-cc---e----eeecCCCHHHHHHHHHHHHHhCCCCEEE
Confidence 9999998752 11111 11 0 01 0 011334456889999999999 799887
No 8
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=98.68 E-value=1.2e-07 Score=85.20 Aligned_cols=154 Identities=17% Similarity=0.168 Sum_probs=108.3
Q ss_pred HHHHHHHhcCcEEEEccCCCCCCCC---CCceEEEecccc---hHHHHHHHHHHHhCCCeEEe-CChhHHhhhccHHHHH
Q 022979 47 KLEILARNKGISFVAIDQNRPLSDQ---GPFDVVLHKLSG---MEWCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSML 119 (289)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~pl~~Q---gp~DvILHKltd---~~~~~~l~~y~~~hP~v~Vi-DP~~~i~~l~dR~~~l 119 (289)
.+...+++.|++++.+|.+.....+ ..+|+|+..+.. +. ..++...+.. ++.++ .++++++...|+..+.
T Consensus 25 ~l~~al~~~G~~v~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~e~--~~~~~~~e~~-g~~~~g~~~~~~~~~~dK~~~~ 101 (306)
T 1iow_A 25 AVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHGRGGED--GTLQGMLELM-GLPYTGSGVMASALSMDKLRSK 101 (306)
T ss_dssp HHHHHHHHTTCEEEEECTTTSCGGGTTTTTEEEEEECCCSTTTSS--SHHHHHHHHH-TCCBSSCCHHHHHHHHCHHHHH
T ss_pred HHHHHHHHCCCeEEEEecCchHHHHhhccCCCEEEEcCCCCCCcc--hHHHHHHHHc-CCCccCCCHHHHHHHcCHHHHH
Confidence 4777788999999999987432221 478999877632 11 0122233332 56665 7899999999999999
Q ss_pred HHHhhcccCCCCCceecCceEEEcCCCCCchh------HHHhcCCccceEeeeccccCCCCceeeEEEeccCCCCC----
Q 022979 120 QDVADLNLSDCNGKVRVPRQMVITKDSLSIPD------QVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE---- 189 (289)
Q Consensus 120 ~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~------~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~---- 189 (289)
+.+++. .|.+|++..++.. ++.+ ......+.||+|+||....|+ ..+.++.+.+.|..
T Consensus 102 ~~l~~~-------gi~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~vvKP~~g~~~---~gv~~v~~~~el~~~~~~ 169 (306)
T 1iow_A 102 LLWQGA-------GLPVAPWVALTRA--EFEKGLSDKQLAEISALGLPVIVKPSREGSS---VGMSKVVAENALQDALRL 169 (306)
T ss_dssp HHHHHT-------TCCBCCEEEEEHH--HHHHCCCTHHHHHHHTTCSSEEEEETTCCTT---TTCEEESSGGGHHHHHHH
T ss_pred HHHHHC-------CCCCCCeEEEchh--hhhccchhhhhhHHhccCCCEEEEeCCCCCC---CCEEEeCCHHHHHHHHHH
Confidence 998764 3668998888532 1111 001236789999999997765 55778888887642
Q ss_pred ---CCCCeeEEEeeecceeEEEEEEEcceEE
Q 022979 190 ---LEPPMLLQEFVNHGGILFKIYIIGETIK 217 (289)
Q Consensus 190 ---L~~P~VlQeFINH~gvLfKVYVvGd~v~ 217 (289)
...++++||||+ |.-|-|.++|+.+.
T Consensus 170 ~~~~~~~~lvee~i~--g~e~~v~~~~g~~~ 198 (306)
T 1iow_A 170 AFQHDEEVLIEKWLS--GPEFTVAILGEEIL 198 (306)
T ss_dssp HTTTCSEEEEEECCC--CCEEEEEEETTEEC
T ss_pred HHhhCCCEEEEeCcC--CEEEEEEEECCCcc
Confidence 357899999998 68899999998653
No 9
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=98.63 E-value=2.3e-07 Score=88.25 Aligned_cols=174 Identities=11% Similarity=0.101 Sum_probs=117.7
Q ss_pred CceEEEecccch------HHHHHHHHHHHhCCCeEEeCChhHHhhhccH----HHHHHHHhhcccCCCCCceecCceEEE
Q 022979 73 PFDVVLHKLSGM------EWCKIIEDYRQKHPEVTILDPPDAIKHLHNR----QSMLQDVADLNLSDCNGKVRVPRQMVI 142 (289)
Q Consensus 73 p~DvILHKltd~------~~~~~l~~y~~~hP~v~ViDP~~~i~~l~dR----~~~l~~l~~l~~~~~~~~i~~P~~v~i 142 (289)
.+|++|=+.... .|+. +-++.+.. .+.+|+++++|....|+ ..+++.+..+... .+..|.....
T Consensus 85 ~~D~vi~R~~~~~~~~~~~yr~-vl~~le~~-GvpviN~~~sI~~~~DK~~v~~~~l~~l~~~gi~----~~P~~~~t~~ 158 (344)
T 2p0a_A 85 KPDFILVRQHAYSMALGEDYRS-LVIGLQYG-GLPAVNSLYSVYNFCSKPWVFSQLIKIFHSLGPE----KFPLVEQTFF 158 (344)
T ss_dssp CCSEEEECSCSEEGGGTEECHH-HHHHHHHT-TCCEESCHHHHHHTTCHHHHHHHHHHHHHHHCTT----TSCBCCCEEE
T ss_pred CCCEEEEeccccccccchhHHH-HHHHHHHC-CceecCCHHHHHhhCCchHHHHHHHHHHHHCCCC----CCCCCCEEec
Confidence 689988887553 2553 33344443 89999999999999999 6667777655431 2232333333
Q ss_pred cCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEeccCCCCC-------CCCCeeEEEeeecceeEEEEEEEcce
Q 022979 143 TKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGET 215 (289)
Q Consensus 143 ~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~-------L~~P~VlQeFINH~gvLfKVYVvGd~ 215 (289)
. +..++ ...+.||+|+||+.+++ ...+.++-+++.+.+ .+..+++||||+ .+.=+.|||||++
T Consensus 159 ~-~~~~~-----~~~~g~PvVvK~~~Gs~---G~GV~lve~~~~~~~~~~~~~~~~~~~~vQefI~-~g~DiRv~VVGg~ 228 (344)
T 2p0a_A 159 P-NHKPM-----VTAPHFPVVVKLGHAHA---GMGKIKVENQLDFQDITSVVAMAKTYATTEAFID-SKYDIRIQKIGSN 228 (344)
T ss_dssp S-SSTTC-----CCCSSSSEEEEESSCCT---TTTEEEECSHHHHHHHHHHHHHHTCCEEEEECCC-EEEEEEEEEETTE
T ss_pred C-chhhh-----hhccCCCEEEEeCCCCc---eeCeEEECCHHHHHHHHHHHhccCCeEEEEeccC-CCccEEEEEECCE
Confidence 2 22111 12467999999999554 477999999998763 256788999999 7999999999999
Q ss_pred EEEEEecCCC-CCchhhhhccceeeeeCCccCCCcCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCeEee
Q 022979 216 IKVVRRFSLP-NVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRL-VNILVF 286 (289)
Q Consensus 216 v~vv~R~SLp-n~~~~~~~~~~~~~~f~~vS~~~~~~~~~~ld~~~~e~p~~~~l~~iA~~LR~~L-gL~LFG 286 (289)
+....|.|.. ++..+ + + . +. ....+..+..+++|....+.+ ||.+.|
T Consensus 229 vva~~R~~~~g~wrtN-------------~---~-~---~~----~e~~~l~~e~~~la~~Aa~a~gGldi~G 277 (344)
T 2p0a_A 229 YKAYMRTSISGNWKAN-------------T---G-S---AM----LEQVAMTERYRLWVDSCSEMFGGLDICA 277 (344)
T ss_dssp EEEEEEEESSSCSSTT-------------S---S-S---EE----EEEECCCHHHHHHHHHHTTGGGCCSEEE
T ss_pred EEEEEEecCCCCCeec-------------C---C-c---eE----EEeeCCCHHHHHHHHHHHHHhCCCCEEE
Confidence 9988888752 22211 1 0 0 00 011333456889999999999 799887
No 10
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=98.54 E-value=4.2e-07 Score=88.60 Aligned_cols=174 Identities=11% Similarity=0.118 Sum_probs=116.8
Q ss_pred CceEEEecccch------HHHHHHHHHHHhCCCeEEeCChhHHhhhccH----HHHHHHHhhcccCCCCCceecCceEEE
Q 022979 73 PFDVVLHKLSGM------EWCKIIEDYRQKHPEVTILDPPDAIKHLHNR----QSMLQDVADLNLSDCNGKVRVPRQMVI 142 (289)
Q Consensus 73 p~DvILHKltd~------~~~~~l~~y~~~hP~v~ViDP~~~i~~l~dR----~~~l~~l~~l~~~~~~~~i~~P~~v~i 142 (289)
.+|++|=+.... .|+..+. +.+.. .+.+|+++++|....|+ ..+++.+..+... .+..|.+...
T Consensus 180 ~~DaviiR~~~~~~~~~~~yr~vlr-~lE~~-GvpviNs~~sI~~~~DK~~vf~~~l~ll~~~gi~----~iP~t~~t~~ 253 (422)
T 1pk8_A 180 KPDFVLIRQHAFSMARNGDYRSLVI-GLQYA-GIPSVNSLHSVYNFCDKPWVFAQMVRLHKKLGTE----EFPLIDQTFY 253 (422)
T ss_dssp CCSEEEECSCSBCSSTTCBCHHHHH-HHHHT-TCCEESCHHHHHHTSSHHHHHHHHHHHHHHHCTT----TSCBCCCEEE
T ss_pred CCCEEEEeccccccccchhHHHHHH-HHHHC-CccccCCHHHHHHhCCccHHHHHHHHHHHhCCCC----CCCCCceEec
Confidence 579888877543 2554333 44443 89999999999999999 4566666654331 2232333333
Q ss_pred cCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEeccCCCCCC-------CCCeeEEEeeecceeEEEEEEEcce
Q 022979 143 TKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGET 215 (289)
Q Consensus 143 ~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~L-------~~P~VlQeFINH~gvLfKVYVvGd~ 215 (289)
. +.. +.+ ..+.||+|+||+.+++ ...+.++-+++.+..+ +..+++||||. .+.=+.|||||++
T Consensus 254 ~-~~~---~~i--~~~g~PvVvKp~~GS~---G~GV~lve~~~~l~~ii~~~~~~~~~~~vQEfI~-~g~DIRv~VVGg~ 323 (422)
T 1pk8_A 254 P-NHK---EML--SSTTYPVVVKMGHAHS---GMGKVKVDNQHDFQDIASVVALTKTYATAEPFID-AKYDVRVQKIGQN 323 (422)
T ss_dssp S-SGG---GCC--CCSSSSEEEEESSCCT---TTTEEEECSHHHHHHHHHHHHHHTSCEEEEECCC-EEEEEEEEEETTE
T ss_pred C-chh---hhh--hccCCCEEEEeCCCCc---eeCeEEeCCHHHHHHHHHHHhccCceEEEEeecC-CCceEEEEEECCE
Confidence 2 211 111 2467999999999555 4779999999887632 56788999999 7999999999999
Q ss_pred EEEEEecCCC-CCchhhhhccceeeeeCCccCCCcCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCeEee
Q 022979 216 IKVVRRFSLP-NVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRL-VNILVF 286 (289)
Q Consensus 216 v~vv~R~SLp-n~~~~~~~~~~~~~~f~~vS~~~~~~~~~~ld~~~~e~p~~~~l~~iA~~LR~~L-gL~LFG 286 (289)
+....|.+.. ++..+ + + . +. ....+..+..+++|....+.+ ||.+.|
T Consensus 324 vva~~Rr~~~g~WrtN-------------v---g-~---g~----~e~i~lt~e~~elA~kAaka~gGldiaG 372 (422)
T 1pk8_A 324 YKAYMRTSVSGNWKTN-------------T---G-S---AM----LEQIAMSDRYKLWVDTCSEIFGGLDICA 372 (422)
T ss_dssp EEEEEEEESSSCSSTT-------------S---S-C---EE----EEEECCCHHHHHHHHHHTTGGGCCSEEE
T ss_pred EEEEEEEcCCCCceec-------------c---C-c---ee----eeeeCCCHHHHHHHHHHHHHhCCCCEEE
Confidence 9988888752 12111 1 0 0 00 011233456899999999999 899887
No 11
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=98.51 E-value=8.6e-07 Score=81.28 Aligned_cols=155 Identities=14% Similarity=0.069 Sum_probs=107.3
Q ss_pred HHHHHHhcCcEEEEccCCCCCCC---CCCceEEEecccchH-HHHHHHHHHHhCCCeEEe-CChhHHhhhccHHHHHHHH
Q 022979 48 LEILARNKGISFVAIDQNRPLSD---QGPFDVVLHKLSGME-WCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDV 122 (289)
Q Consensus 48 l~~~~~~~gi~~v~iD~~~pl~~---Qgp~DvILHKltd~~-~~~~l~~y~~~hP~v~Vi-DP~~~i~~l~dR~~~l~~l 122 (289)
+....++.|++.+.+|.+..... ...+|+++--+.+.. ....++.+.+.. ++.++ .+++++...+|+..+.+.+
T Consensus 37 v~~al~~~g~~v~~i~~~~~~~~~l~~~~~D~v~~~~hg~~ge~~~~~~~le~~-gip~~g~~~~~~~~~~dK~~~k~~l 115 (317)
T 4eg0_A 37 VLQGLRDAGIDAHPFDPAERPLSALKDEGFVRAFNALHGGYGENGQIQGALDFY-GIRYTGSGVLGSALGLDKFRTKLVW 115 (317)
T ss_dssp HHHHHHHTTCEEEEECTTTSCTTHHHHTTCCEEEECCCSGGGTSSHHHHHHHHH-TCEESSCCHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHCCCEEEEEeCCCchHHHhhhcCCCEEEEcCCCCCCchHHHHHHHHHc-CCCeeCcCHHHHHHHhCHHHHHHHH
Confidence 66667889999999996543222 247999987665421 011344555444 57777 6779999999999999998
Q ss_pred hhcccCCCCCceecCceEEEcCCCCCchhHHH--hcCCccceEeeeccccCCCCceeeEEEeccCCCC-------CCCCC
Q 022979 123 ADLNLSDCNGKVRVPRQMVITKDSLSIPDQVF--EAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLS-------ELEPP 193 (289)
Q Consensus 123 ~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~--~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~-------~L~~P 193 (289)
++. .|.+|++..++... +..+... ...+.||+|+||....| |..+.++.+++.|. ....+
T Consensus 116 ~~~-------Gip~p~~~~~~~~~-~~~~~~~~~~~~~g~PvvvKP~~~~~---s~Gv~~v~~~~el~~a~~~~~~~~~~ 184 (317)
T 4eg0_A 116 QQT-------GVPTPPFETVMRGD-DYAARATDIVAKLGLPLFVKPASEGS---SVAVLKVKTADALPAALSEAATHDKI 184 (317)
T ss_dssp HHT-------TCCCCCEEEEETTS-CHHHHHHHHHHHHCSCEEEEECC--------CCEEECSGGGHHHHHHHHTTTCSE
T ss_pred HHC-------CcCCCCEEEEECch-hHHHHHHHHHHhcCCCEEEEeCCCCC---CCCEEEECCHHHHHHHHHHHHhCCCe
Confidence 764 46789998885322 2222220 13578999999998766 45677899998875 23568
Q ss_pred eeEEEeeecceeEEEEEEEcce
Q 022979 194 MLLQEFVNHGGILFKIYIIGET 215 (289)
Q Consensus 194 ~VlQeFINH~gvLfKVYVvGd~ 215 (289)
+++||||++ |.=|-|.|+||.
T Consensus 185 ~lvEe~i~~-G~E~~v~vl~~~ 205 (317)
T 4eg0_A 185 VIVEKSIEG-GGEYTACIAGDL 205 (317)
T ss_dssp EEEEECCCS-SEEEEEEEETTC
T ss_pred EEEEcCCCC-CcEEEEEEECCc
Confidence 999999997 688999999995
No 12
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=98.26 E-value=5.3e-06 Score=74.29 Aligned_cols=153 Identities=12% Similarity=0.153 Sum_probs=100.3
Q ss_pred HHHHHHHhcCcEEEEccCCCCC-C-----------------------------CCCCceEEEecccc---hHH--HHHHH
Q 022979 47 KLEILARNKGISFVAIDQNRPL-S-----------------------------DQGPFDVVLHKLSG---MEW--CKIIE 91 (289)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~pl-~-----------------------------~Qgp~DvILHKltd---~~~--~~~l~ 91 (289)
.+...+++.|+.++.+|.+..- . +-..+|+|+-.... .++ ...+.
T Consensus 23 ~l~~a~~~~G~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~~ 102 (316)
T 1gsa_A 23 AMLLEAQRRGYELHYMEMGDLYLINGEARAHTRTLNVKQNYEEWFSFVGEQDLPLADLDVILMRKDPPFDTEFIYATYIL 102 (316)
T ss_dssp HHHHHHHHTTCEEEEECGGGEEEETTEEEEEEEEEEECSCSSCCEEEEEEEEEEGGGSSEEEECCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEEchhHeEEECCeEEEEEeeeEeccCcccceeccCccccccccCCEEEEecCCCCchhhHHHHHHH
Confidence 4777788899999988865210 0 00136777765532 222 22333
Q ss_pred HHHHhCCCeEEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccC
Q 022979 92 DYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDG 171 (289)
Q Consensus 92 ~y~~~hP~v~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~G 171 (289)
+..+.. .+.++.+++++....|+..+.+.++ .+|++..++ +.+++.+.+... . |+|+||....|
T Consensus 103 ~~l~~~-g~~~~~~~~~~~~~~dK~~~~~~l~-----------~~P~t~~~~-~~~~~~~~~~~~--~-p~vvKP~~g~~ 166 (316)
T 1gsa_A 103 ERAEEK-GTLIVNKPQSLRDCNEKLFTAWFSD-----------LTPETLVTR-NKAQLKAFWEKH--S-DIILKPLDGMG 166 (316)
T ss_dssp HHHHHT-TCEEESCHHHHHHCCTTGGGGGGTT-----------TSCCEEEES-CHHHHHHHHHHH--S-SEEEECSSCCT
T ss_pred HHHHHc-CCeEecCHHHHHhhhhHHHHHhhhh-----------cCCCeEEeC-CHHHHHHHHHHc--C-CEEEEECCCCC
Confidence 333343 4677899999999999988777653 478888774 222222223333 3 99999999665
Q ss_pred CCCceeeEEEe-ccCCCC-------CC-CCCeeEEEeeecc-eeEEEEEEEcceEEE
Q 022979 172 SAKSHELFLAY-DRFSLS-------EL-EPPMLLQEFVNHG-GILFKIYIIGETIKV 218 (289)
Q Consensus 172 s~~SH~Maivf-~~~gL~-------~L-~~P~VlQeFINH~-gvLfKVYVvGd~v~v 218 (289)
+ ..+.++. +++.|. .. ..|+++||||+.. +.=+-++|+|+.+..
T Consensus 167 g---~Gv~~v~~~~~~l~~~~~~~~~~~~~~~lvqe~i~~~~~~~~~v~~~~g~~~~ 220 (316)
T 1gsa_A 167 G---ASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVP 220 (316)
T ss_dssp T---TTCEEECTTCTTHHHHHHHHTTTTTSCEEEEECCGGGGGCEEEEEEETTEECS
T ss_pred c---ccEEEecCChHHHHHHHHHHHhcCCceEEEecccCCCCCCCEEEEEECCEEee
Confidence 4 5577777 766653 22 3689999999973 778899999988753
No 13
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=98.19 E-value=2.1e-05 Score=74.04 Aligned_cols=155 Identities=12% Similarity=0.157 Sum_probs=98.7
Q ss_pred chHHHHHHHhcCcEEEEccCCCCCCCCCCce-EEEecccchHHH-H-----------------HHHHHHHhCCCeEEeCC
Q 022979 45 QPKLEILARNKGISFVAIDQNRPLSDQGPFD-VVLHKLSGMEWC-K-----------------IIEDYRQKHPEVTILDP 105 (289)
Q Consensus 45 ~~~l~~~~~~~gi~~v~iD~~~pl~~Qgp~D-vILHKltd~~~~-~-----------------~l~~y~~~hP~v~ViDP 105 (289)
...+...+++.|+..+-+|.+..-....-.| .+.-...|.+.. + .+-++.+++. + +--+
T Consensus 26 g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~~~e~~~~~~~~~l~~~g-~-~~~~ 103 (389)
T 3q2o_A 26 GRMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTYEFENIDYRCLQWLEKHA-Y-LPQG 103 (389)
T ss_dssp HHHHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEESCCCCCHHHHHHHHHHS-C-CTTC
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeeeccccccHHHHHHHHhhC-c-cCCC
Confidence 3457777889999999999864322211122 222223332110 0 1112222222 1 4567
Q ss_pred hhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEeccC
Q 022979 106 PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRF 185 (289)
Q Consensus 106 ~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~ 185 (289)
+++++...||..+.+.++++ .|.+|++..+++ .+++.+.. ..+.||+|+||.... ..+..|.++.+++
T Consensus 104 ~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~-~~~~~~~~--~~~g~P~vvKp~~~~--~~g~Gv~~v~~~~ 171 (389)
T 3q2o_A 104 SQLLSKTQNRFTEKNAIEKA-------GLPVATYRLVQN-QEQLTEAI--AELSYPSVLKTTTGG--YDGKGQVVLRSEA 171 (389)
T ss_dssp SHHHHHTTSHHHHHHHHHHT-------TCCCCCEEEESS-HHHHHHHH--HHHCSSEEEEESSCC--SSSCCEEEESSGG
T ss_pred HHHHHHhcCHHHHHHHHHHC-------CCCCCCeEEECC-HHHHHHHH--HhcCCCEEEEeCCCC--CCCCCeEEECCHH
Confidence 78999999999999998765 366888888852 11222222 246799999997643 2357899999999
Q ss_pred CCCCC-----CCCeeEEEeeecceeEEEEEEEcc
Q 022979 186 SLSEL-----EPPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 186 gL~~L-----~~P~VlQeFINH~gvLfKVYVvGd 214 (289)
.|... ..++++||||+ ++.=|-|.+++|
T Consensus 172 el~~~~~~~~~~~~lvEe~i~-g~~E~~v~~~~~ 204 (389)
T 3q2o_A 172 DVDEARKLANAAECILEKWVP-FEKEVSVIVIRS 204 (389)
T ss_dssp GHHHHHHHHHHSCEEEEECCC-CSEEEEEEEEEC
T ss_pred HHHHHHHhcCCCCEEEEeccc-CceEEEEEEEEc
Confidence 87642 46999999999 457788888865
No 14
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=98.13 E-value=8.6e-05 Score=69.97 Aligned_cols=150 Identities=14% Similarity=0.123 Sum_probs=93.1
Q ss_pred HHHHHHHhcCcEEEEccCCCCCCCCCCce-EEEecccchHHH-------------------HHHHHHHHhCCCeEEeCCh
Q 022979 47 KLEILARNKGISFVAIDQNRPLSDQGPFD-VVLHKLSGMEWC-------------------KIIEDYRQKHPEVTILDPP 106 (289)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~pl~~Qgp~D-vILHKltd~~~~-------------------~~l~~y~~~hP~v~ViDP~ 106 (289)
.+...|++.|+..+-+|.+..-....-.| .+.--.+|.+.. +.+.+..+.. .|.-++
T Consensus 26 ~la~aa~~lG~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~~dvi~~~~E~~~~~~l~~l~~~~---~v~p~~ 102 (377)
T 3orq_A 26 MMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITYEFENISAQQLKLLCEKY---NIPQGY 102 (377)
T ss_dssp HHHHHHHHTTCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHHCSEEEESSTTSCHHHHHHHHHHS---CCTTTT
T ss_pred HHHHHHHHCCCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHhCCcceecccccCHHHHHHHhhhc---CCCCCH
Confidence 46777888999999999763311111112 222222332211 1122222221 233456
Q ss_pred hHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEeccCC
Q 022979 107 DAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFS 186 (289)
Q Consensus 107 ~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~g 186 (289)
++++...||..+.+.++++ .|.+|++..+++ .+++.+... .+.||+|+||.... ..++.+.++.+++.
T Consensus 103 ~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~-~~~~~~~~~--~~g~P~vvKp~~gg--~~g~Gv~~v~~~~e 170 (377)
T 3orq_A 103 QAIQLLQDRLTEKETLKSA-------GTKVVPFISVKE-STDIDKAIE--TLGYPFIVKTRFGG--YDGKGQVLINNEKD 170 (377)
T ss_dssp HHHHHHHSHHHHHHHHHHT-------TCCBCCEEEECS-STHHHHHHH--HTCSSEEEEESSSC--CTTTTEEEECSTTS
T ss_pred HHHHHhcCHHHHHHHHHHC-------CCCCCCeEEECC-HHHHHHHHH--HcCCCEEEEeCCCC--CCCCCeEEECCHHH
Confidence 8888899999988888754 367899988853 222323222 46799999997643 23577889999998
Q ss_pred CCC-----CCCCeeEEEeeecceeEEEEEEE
Q 022979 187 LSE-----LEPPMLLQEFVNHGGILFKIYII 212 (289)
Q Consensus 187 L~~-----L~~P~VlQeFINH~gvLfKVYVv 212 (289)
|.. ...++++||||+ +..=|-|.++
T Consensus 171 l~~a~~~~~~~~~ivEe~i~-g~~E~sv~~~ 200 (377)
T 3orq_A 171 LQEGFKLIETSECVAEKYLN-IKKEVSLTVT 200 (377)
T ss_dssp HHHHHHHHTTSCEEEEECCC-EEEEEEEEEE
T ss_pred HHHHHHhcCCCcEEEEccCC-CCEEEEEEEE
Confidence 753 247899999998 3356777777
No 15
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=98.01 E-value=2.3e-05 Score=81.18 Aligned_cols=148 Identities=14% Similarity=0.150 Sum_probs=103.9
Q ss_pred HHHHHHHhcCcEEEEccCCCCCCCC---CCceEEEecccchHHHHHHHHHHHhCCCeEEeCChhHHhhhccHHHHHHHHh
Q 022979 47 KLEILARNKGISFVAIDQNRPLSDQ---GPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVA 123 (289)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~pl~~Q---gp~DvILHKltd~~~~~~l~~y~~~hP~v~ViDP~~~i~~l~dR~~~l~~l~ 123 (289)
.+.+.|+++|++++.||.+.++-.. ..+|++.. -.+.-.++..++...-|+..+.+.+.
T Consensus 432 ~l~~aA~~~Gi~v~vidp~~~l~~l~~~~~~~~~~~------------------g~itg~~~~~a~~~~~DK~~tk~lL~ 493 (750)
T 3ln6_A 432 LLLFDVIQKGVNFEVLDEQDQFLKLWHNSHIEYVKN------------------GNMTSKDNYIVPLAMANKVVTKKILD 493 (750)
T ss_dssp HHHHHHHHHTCEEEESCSSSCEEEEEETTEEEEEET------------------TTBCTTSCTHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEECCCchHhhhccCCCcEEEec------------------CCeeCCCHHHHHHHHhCHHHHHHHHH
Confidence 4888899999999999998766532 23444432 23355667778888779998888887
Q ss_pred hcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEe---ccCCCCC-------CCCC
Q 022979 124 DLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAY---DRFSLSE-------LEPP 193 (289)
Q Consensus 124 ~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf---~~~gL~~-------L~~P 193 (289)
+. .|.+|++.++.+ .++..+.. ...+.||+|+||....| +..+.++. +.+.+.. ...+
T Consensus 494 ~~-------GIPvP~~~~~~~-~~ea~~~~-~~~~g~PvVVKP~~G~~---G~GV~iv~~~~s~eel~~a~~~~~~~~~~ 561 (750)
T 3ln6_A 494 EK-------HFPTPFGDEFTD-RKEALNYF-SQIQDKPIVVKPKSTNF---GLGISIFKTSANLASYEKAIDIAFTEDSA 561 (750)
T ss_dssp HT-------TCCCCCCCCEET-TTTHHHHH-HHSSSSCEEEEETTCCS---SSSCEEESSCCCHHHHHHHHHHHHHHCSE
T ss_pred HC-------CcCCCCEEEECC-HHHHHHHH-HHhcCCcEEEEeCCCCC---CCCEEEEeCCCCHHHHHHHHHHHHhhCCc
Confidence 53 467888888753 22232222 13578999999976444 45788887 5554431 2568
Q ss_pred eeEEEeeecceeEEEEEEEcceEEEEEecCCCC
Q 022979 194 MLLQEFVNHGGILFKIYIIGETIKVVRRFSLPN 226 (289)
Q Consensus 194 ~VlQeFINH~gvLfKVYVvGd~v~vv~R~SLpn 226 (289)
+++||||. |.=|-|+|+||++.-+.+.--++
T Consensus 562 vlVEefI~--G~E~~v~Vvgg~vvaa~~r~p~~ 592 (750)
T 3ln6_A 562 ILVEEYIE--GTEYRFFVLEGDCIAVLLRVAAN 592 (750)
T ss_dssp EEEEECCC--SEEEEEEEETTEEEEEEEEECCE
T ss_pred EEEEeccC--CCEEEEEEECCEEEEEEEEecce
Confidence 99999998 78999999999997655544444
No 16
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=97.90 E-value=1.4e-05 Score=74.83 Aligned_cols=129 Identities=15% Similarity=0.202 Sum_probs=87.5
Q ss_pred CCceEEEecc---cchHHHHHHHHHHHhCCCeEEeCC-hhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCC
Q 022979 72 GPFDVVLHKL---SGMEWCKIIEDYRQKHPEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSL 147 (289)
Q Consensus 72 gp~DvILHKl---td~~~~~~l~~y~~~hP~v~ViDP-~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~ 147 (289)
..+|+|+--+ .++. ..++...+.. ++.++-| ++++...+|+..+.+.+++. .|.+|++..++....
T Consensus 86 ~~~D~v~~~~~g~~~ed--~~~~~~le~~-gip~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~~ 155 (364)
T 2i87_A 86 QPYDAVFPLLHGPNGED--GTIQGLFEVL-DVPYVGNGVLSAASSMDKLVMKQLFEHR-------GLPQLPYISFLRSEY 155 (364)
T ss_dssp SBCSEEEEECCCSSSCT--THHHHHHHHH-TCCBSSCCHHHHHHHHSHHHHHHHHHHH-------TCCCCCEEEEEHHHH
T ss_pred cCCCEEEEeCCCCCCcC--HHHHHHHHHc-CCCccCCCHHHHHHHcCHHHHHHHHHHC-------CCCCCCEEEEechhh
Confidence 3688888554 2322 1123333332 4666655 89999999999999998764 366899988852210
Q ss_pred C--chhHHH--hcCCccceEeeeccccCCCCceeeEEEeccCCCCC-------CCCCeeEEEeeecceeEEEEEEEcce
Q 022979 148 S--IPDQVF--EAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGET 215 (289)
Q Consensus 148 ~--~~~~l~--~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~-------L~~P~VlQeFINH~gvLfKVYVvGd~ 215 (289)
. ..+.+. ...+.||+|+||....|+ ..+.+|.+++.|.. ...++++||||+ |.-|-|.|+|+.
T Consensus 156 ~~~~~~~~~~~~~~~g~PvvvKP~~g~~s---~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~--G~E~~v~vl~~~ 229 (364)
T 2i87_A 156 EKYEHNILKLVNDKLNYPVFVKPANLGSS---VGISKCNNEAELKEGIKEAFQFDRKLVIEQGVN--AREIEVAVLGND 229 (364)
T ss_dssp HHHHHHHHHHHHHHCCSSEEEEESSCSSC---TTCEEESSHHHHHHHHHHHHTTCSEEEEEECCC--CEEEEEEEEESS
T ss_pred cccchhHHHHHHHhcCCCEEEEeCCCCCC---CCEEEECCHHHHHHHHHHHHhcCCeEEEEeCcc--CeEEEEEEEcCC
Confidence 0 000111 135789999999987764 56889999887652 357899999998 688999999985
No 17
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=97.88 E-value=0.00016 Score=67.53 Aligned_cols=148 Identities=14% Similarity=0.162 Sum_probs=94.9
Q ss_pred HHHHHHHhcCcEEEEccCCCCCC-CC--------------------CCceEEEecccchHHHHHHHHHHHhCCCeEEeCC
Q 022979 47 KLEILARNKGISFVAIDQNRPLS-DQ--------------------GPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDP 105 (289)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~pl~-~Q--------------------gp~DvILHKltd~~~~~~l~~y~~~hP~v~ViDP 105 (289)
.+...+++.|+..+-+|.+..-. .+ ..+|+|+--..+. ..+ +.++.++. .+.+.-+
T Consensus 15 ~~~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~d~v~~~~e~~-~~~-~~~~l~~~-gi~~~~~ 91 (380)
T 3ax6_A 15 MMTLEAKKMGFYVIVLDPTPRSPAGQVADEQIVAGFFDSERIEDLVKGSDVTTYDLEHI-DVQ-TLKKLYNE-GYKIHPS 91 (380)
T ss_dssp HHHHHHHHTTCEEEEEESSTTCTTGGGSSEEEECCTTCHHHHHHHHHTCSEEEESCSCS-CHH-HHHHHHHT-TCEESSC
T ss_pred HHHHHHHHCCCEEEEEeCCCCCchhhhCceEEECCCCCHHHHHHHHhcCCEEEecccCC-CHH-HHHHHHHC-CCeECCC
Confidence 45556788999999998853211 11 1234443211111 111 22233333 4456688
Q ss_pred hhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeecccc-CCCCceeeEEEecc
Q 022979 106 PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVD-GSAKSHELFLAYDR 184 (289)
Q Consensus 106 ~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~-Gs~~SH~Maivf~~ 184 (289)
+++++...|+..+.+.+++. .|.+|++..+++.. + ....+.||+|+||.... | +..+.++.++
T Consensus 92 ~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~~~~----~--~~~~~~~P~vvKp~~~~y~---g~Gv~~v~~~ 155 (380)
T 3ax6_A 92 PYTLEIIQDKFVQKEFLKKN-------GIPVPEYKLVKDLE----S--DVREFGFPVVQKARKGGYD---GRGVFIIKNE 155 (380)
T ss_dssp HHHHHHHHSHHHHHHHHHHT-------TCCCCCEEECSSHH----H--HHHTTCSSEEEEESCCC--------EEEECSG
T ss_pred HHHHHHhcCHHHHHHHHHHc-------CCCCCCeEEeCCHH----H--HHHhcCCCEEEEecCCCCC---CCCeEEECCH
Confidence 88999999999998888764 36688888775211 1 22357899999999755 4 5678899999
Q ss_pred CCCCC-CCCCeeEEEeeecceeEEEEEEEcc
Q 022979 185 FSLSE-LEPPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 185 ~gL~~-L~~P~VlQeFINH~gvLfKVYVvGd 214 (289)
+.|.. ++.++++||||+. |.=|-|.+++|
T Consensus 156 ~el~~~~~~~~lvEe~i~~-g~e~sv~~~~~ 185 (380)
T 3ax6_A 156 KDLENAIKGETYLEEFVEI-EKELAVMVARN 185 (380)
T ss_dssp GGGGGCCCSSEEEEECCCE-EEEEEEEEEEC
T ss_pred HHHHHHhcCCEEEEeccCC-CeeEEEEEEEC
Confidence 88764 3478999999986 67888888875
No 18
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=97.87 E-value=0.0001 Score=69.56 Aligned_cols=131 Identities=15% Similarity=0.149 Sum_probs=89.6
Q ss_pred CCceEEEecccchHH-HHHHHHHHHhCCCeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCC--
Q 022979 72 GPFDVVLHKLSGMEW-CKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSL-- 147 (289)
Q Consensus 72 gp~DvILHKltd~~~-~~~l~~y~~~hP~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~-- 147 (289)
..+|+|+--+.+..- ...++...+.. ++.++ -++.++...+|+..+.+.+++. .|.+|+++.++...+
T Consensus 92 ~~~D~v~~~~~g~~gedg~~~~lle~~-gip~~G~~~~a~~~~~DK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~ 163 (377)
T 1ehi_A 92 GDFDIFFPVVHGNLGEDGTLQGLFKLL-DKPYVGAPLRGHAVSFDKALTKELLTVN-------GIRNTKYIVVDPESANN 163 (377)
T ss_dssp CCCSEEEEECCSTTTSSSHHHHHHHHT-TCCBSSCCHHHHHHHHSHHHHHHHHHTT-------TCCCCCEEEECTTGGGG
T ss_pred cCCCEEEEecCCCCCcCHHHHHHHHHc-CCCEeCcCHHHHHHHcCHHHHHHHHHHc-------CCCCCCEEEEeccccch
Confidence 368988866533210 01244444443 67776 7889999999999999998753 477899998853311
Q ss_pred CchhHHHhcCCccceEeeeccccCCCCceeeEEEeccCCCC-------CCCCCeeEEEeeecceeEEEEEEEcce
Q 022979 148 SIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLS-------ELEPPMLLQEFVNHGGILFKIYIIGET 215 (289)
Q Consensus 148 ~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~-------~L~~P~VlQeFINH~gvLfKVYVvGd~ 215 (289)
....... ..+.||+|+||....|+ ..+.+|.+++.|. ....++++||||+ |..=|-|.|+||.
T Consensus 164 ~~~~~~~-~~~g~PvvVKP~~~~~s---~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~-G~~E~~v~vl~~~ 233 (377)
T 1ehi_A 164 WSWDKIV-AELGNIVFVKAANQGSS---VGISRVTNAEEYTEALSDSFQYDYKVLIEEAVN-GARELEVGVIGND 233 (377)
T ss_dssp CCHHHHH-HHHCSCEEEEESSCCTT---TTEEEECSHHHHHHHHHHHTTTCSCEEEEECCC-CSCEEEEEEEESS
T ss_pred HHHHHHH-HhcCCCEEEEeCCCCCC---cCEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCC-CCceEEEEEEcCC
Confidence 1112221 24679999999987664 5688899988764 2356899999997 2267889999983
No 19
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=97.86 E-value=8.8e-05 Score=70.68 Aligned_cols=166 Identities=14% Similarity=0.150 Sum_probs=104.5
Q ss_pred ccEEEEEEechhhhhhccchHHHHHHHhcCcEEEEccCCCCC-CCCC--CceEEEecccchHHHHHHHHHHHhCC-----
Q 022979 27 ERLVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPL-SDQG--PFDVVLHKLSGMEWCKIIEDYRQKHP----- 98 (289)
Q Consensus 27 ~~~~VGy~l~~kK~~~~~~~~l~~~~~~~gi~~v~iD~~~pl-~~Qg--p~DvILHKltd~~~~~~l~~y~~~hP----- 98 (289)
+..+||..-.- .....+...|++.|+..+.+| +..- ..|- .+..+.-..+|.. .++++.++ +
T Consensus 23 ~~~~I~ilGgG-----~lg~~l~~aa~~lG~~v~~~d-~~~~p~~~~ad~~~~~~~~~~d~~---~l~~~a~~-~d~i~~ 92 (403)
T 3k5i_A 23 NSRKVGVLGGG-----QLGRMLVESANRLNIQVNVLD-ADNSPAKQISAHDGHVTGSFKERE---AVRQLAKT-CDVVTA 92 (403)
T ss_dssp SCCEEEEECCS-----HHHHHHHHHHHHHTCEEEEEE-STTCTTGGGCCSSCCEESCTTCHH---HHHHHHTT-CSEEEE
T ss_pred CCCEEEEECCC-----HHHHHHHHHHHHCCCEEEEEE-CCCCcHHHhccccceeecCCCCHH---HHHHHHHh-CCEEEE
Confidence 34456555543 133346777888999999999 5211 1121 1233444444432 22222221 1
Q ss_pred ---------------CeEEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcC-CCCCchhHHHhcCCccce
Q 022979 99 ---------------EVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITK-DSLSIPDQVFEAGLKLPL 162 (289)
Q Consensus 99 ---------------~v~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~-~~~~~~~~l~~agl~fP~ 162 (289)
.+.+.-++++++...||..+.+.++++ .|.+|++..++. +.+++.+.. ..+.||+
T Consensus 93 e~e~~~~~~l~~l~~g~~v~p~~~a~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~~~~~~--~~~g~P~ 163 (403)
T 3k5i_A 93 EIEHVDTYALEEVASEVKIEPSWQAIRTIQNKFNQKEHLRKY-------GIPMAEHRELVENTPAELAKVG--EQLGYPL 163 (403)
T ss_dssp SSSCSCHHHHHHHTTTSEESSCHHHHHHHTSHHHHHHHHHTT-------TCCBCCEEEESSCCHHHHHHHH--HHHCSSE
T ss_pred CCCCCCHHHHHHHHcCCccCcCHHHHHHhcCHHHHHHHHHHC-------CcCCCCEEEEcCCCHHHHHHHH--HHhCCCE
Confidence 455677889999999999999888754 477899988852 222222222 2467999
Q ss_pred EeeeccccCCCCceeeEEEeccCCCCC----C-CCCeeEEEeeecceeEEEEEEEcc
Q 022979 163 VAKPLVVDGSAKSHELFLAYDRFSLSE----L-EPPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 163 I~Kp~vA~Gs~~SH~Maivf~~~gL~~----L-~~P~VlQeFINH~gvLfKVYVvGd 214 (289)
|+||.... ..+..+.++.+++.|.. + ..++++||||+. +.=|=|.|++|
T Consensus 164 VvKp~~gg--~~g~Gv~~v~~~~el~~a~~~~~~~~~lvEe~i~~-~~E~sv~v~~~ 217 (403)
T 3k5i_A 164 MLKSKTMA--YDGRGNFRVNSQDDIPEALEALKDRPLYAEKWAYF-KMELAVIVVKT 217 (403)
T ss_dssp EEEESSSC--CTTTTEEEECSTTSHHHHHHHTTTSCEEEEECCCE-EEEEEEEEEEC
T ss_pred EEEeCCCC--cCCCCEEEECCHHHHHHHHHhcCCCcEEEecCCCC-CeEEEEEEEEc
Confidence 99997643 23467889999988753 2 468999999973 56667777765
No 20
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=97.83 E-value=0.00013 Score=67.21 Aligned_cols=125 Identities=13% Similarity=0.119 Sum_probs=88.1
Q ss_pred CCCceEEEecccc---hHHHHHHHHHHHhCCCeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCC
Q 022979 71 QGPFDVVLHKLSG---MEWCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDS 146 (289)
Q Consensus 71 Qgp~DvILHKltd---~~~~~~l~~y~~~hP~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~ 146 (289)
...+|+|+--+.+ +. ..++.+.+.. ++.++ -++.++...+|+..+.+.+++. .+.+|++..++...
T Consensus 74 ~~~~D~v~~~~hg~~ged--g~i~~~le~~-gip~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~ 143 (322)
T 2fb9_A 74 WERYDVVFPLLHGRFGED--GTVQGFLELL-GKPYVGAGVAASALCMDKDLSKRVLAQA-------GVPVVPWVAVRKGE 143 (322)
T ss_dssp CTTCSEEEEECCSTTTTS--SHHHHHHHHH-TCCBSSCCHHHHHHHHCHHHHHHHHHHT-------TCCCCCEEEEETTS
T ss_pred ccCCCEEEEeCCCCCCcc--HHHHHHHHHc-CCCeeCcCHHHHHHHcCHHHHHHHHHHC-------CCCCCCEEEEECch
Confidence 3478999866533 21 1233333332 46666 4589999999999999998754 36689998885332
Q ss_pred CCchhHHHhcCCccceEeeeccccCCCCceeeEEEeccCCCCC-------CCCCeeEEEeeecceeEEEEEEEcce
Q 022979 147 LSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGET 215 (289)
Q Consensus 147 ~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~-------L~~P~VlQeFINH~gvLfKVYVvGd~ 215 (289)
+. . . .+.||+|+||....|+ ..+.++.+++.|.. ...++++||||. |..=|-|.|+|+.
T Consensus 144 ~~---~--~-~~g~PvvvKP~~g~~s---~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~-G~~E~~v~vl~~~ 209 (322)
T 2fb9_A 144 PP---V--V-PFDPPFFVKPANTGSS---VGISRVERFQDLEAALALAFRYDEKAVVEKALS-PVRELEVGVLGNV 209 (322)
T ss_dssp CC---C--C-CSCSCEEEEETTCCTT---TTCEEESSHHHHHHHHHHHTTTCSEEEEEECCS-SCEEEEEEEESSS
T ss_pred hh---h--h-ccCCCEEEEeCCCCCC---CCEEEECCHHHHHHHHHHHHhcCCeEEEEeCCC-CCeeEEEEEEeCC
Confidence 21 1 1 6789999999987764 56788998887652 356899999997 2278999999984
No 21
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=97.82 E-value=6.6e-05 Score=69.49 Aligned_cols=123 Identities=17% Similarity=0.196 Sum_probs=87.3
Q ss_pred CceEEEecc---cchHHHHHHHHHHHhCCCeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCC
Q 022979 73 PFDVVLHKL---SGMEWCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLS 148 (289)
Q Consensus 73 p~DvILHKl---td~~~~~~l~~y~~~hP~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~ 148 (289)
.+|+|+--+ +++. ..++.+.+.. ++.++ -++.++...+|+..+.+.+++. .|.+|++..++....
T Consensus 90 ~~D~v~~~~~g~~ged--~~~~~~le~~-gip~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~~- 158 (343)
T 1e4e_A 90 HVDVAFSALHGKSGED--GSIQGLFELS-GIPFVGCDIQSSAICMDKSLTYIVAKNA-------GIATPAFWVINKDDR- 158 (343)
T ss_dssp ECSEEEECCCSTTTTS--SHHHHHHHHH-TCCBSSCCHHHHHHHHSHHHHHHHHHHT-------TCBCCCEEEECTTCC-
T ss_pred cCCEEEEeCCCCCCcC--HHHHHHHHHc-CCCccCCCHHHHHHHhCHHHHHHHHHHC-------CCCcCCEEEEechhh-
Confidence 467776443 3221 1234444332 56666 4688999999999999998764 366899998853322
Q ss_pred chhHHHhcCCccceEeeeccccCCCCceeeEEEeccCCCCC-------CCCCeeEEEeeecceeEEEEEEEcce
Q 022979 149 IPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGET 215 (289)
Q Consensus 149 ~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~-------L~~P~VlQeFINH~gvLfKVYVvGd~ 215 (289)
... ..+.||+|+||....|+ ..+.++.+++.|.. ...++++||||. |.-|-|.|+|+.
T Consensus 159 ~~~----~~~~~PvvvKP~~~~~s---~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~--G~E~~v~vl~~~ 223 (343)
T 1e4e_A 159 PVA----ATFTYPVFVKPARSGSS---FGVKKVNSADELDYAIESARQYDSKILIEQAVS--GCEVGCAVLGNS 223 (343)
T ss_dssp CCG----GGSCSCEEEEESSCCTT---TTCEEECSGGGHHHHHHHHTTTCSSEEEEECCC--SEEEEEEEEEET
T ss_pred hhh----hccCCCEEEEeCCCCCC---CCEEEeCCHHHHHHHHHHHHhcCCcEEEEeCcC--CeEEEEEEEeCC
Confidence 211 45789999999997764 46888999987752 357899999998 788999999875
No 22
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=97.80 E-value=0.00011 Score=66.80 Aligned_cols=125 Identities=16% Similarity=0.145 Sum_probs=67.7
Q ss_pred CceEEEecccchH--HHHHHHHHHHhCCCe-EEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCc
Q 022979 73 PFDVVLHKLSGME--WCKIIEDYRQKHPEV-TILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSI 149 (289)
Q Consensus 73 p~DvILHKltd~~--~~~~l~~y~~~hP~v-~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~ 149 (289)
.+|+|+- .++.. +...+.+..+.. .+ ++.-++++++...|+..+.+.+++.. |.+|++.... +++
T Consensus 72 ~~d~vi~-~~~~~~~~~a~~~~~l~~~-g~~~~~~~~~~~~~~~dK~~~~~~l~~~g-------ip~p~~~~~~---~~~ 139 (331)
T 2pn1_A 72 GVTALLT-LIDPELGLLAQATERFQAI-GVTVIVSPYAACELCFDKYTMYEYCLRQG-------IAHARTYATM---ASF 139 (331)
T ss_dssp TCCEEEE-SSHHHHHHHHHTHHHHHTT-TCEECCCCHHHHHHHHBHHHHHHHHHHHT-------CCCCCEESSH---HHH
T ss_pred CCCEEEe-CCchhHHHHHHHHHHHHhC-CcEEecCCHHHHHHhhCHHHHHHHHHHcC-------CCCCcEEecH---HHh
Confidence 4566553 22321 333344444443 55 45678999999999999999988653 5567765321 111
Q ss_pred hhHHHhcCCccceEeeeccccCCCCceeeEEEeccCCCCCC---CCCeeEEEeeecceeEEEEEEEcc
Q 022979 150 PDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL---EPPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 150 ~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~L---~~P~VlQeFINH~gvLfKVYVvGd 214 (289)
.+.+....+.||+|+||....| +..+.++.+++.|... ..++++||||.. .-|-|.+++|
T Consensus 140 ~~~~~~~~~~~P~vvKp~~g~g---~~gv~~v~~~~el~~~~~~~~~~lvee~i~G--~e~~v~~~~d 202 (331)
T 2pn1_A 140 EEALAAGEVQLPVFVKPRNGSA---SIEVRRVETVEEVEQLFSKNTDLIVQELLVG--QELGVDAYVD 202 (331)
T ss_dssp HHHHHTTSSCSCEEEEESBC--------------------------CEEEEECCCS--EEEEEEEEEC
T ss_pred hhhhhcccCCCCEEEEeCCCCC---CCCeEEeCCHHHHHHHHHhCCCeEEEecCCC--cEEEEEEEEe
Confidence 1222224688999999988766 5678889998888654 368999999983 6777777753
No 23
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=97.74 E-value=0.00065 Score=62.95 Aligned_cols=140 Identities=20% Similarity=0.295 Sum_probs=89.5
Q ss_pred HHHHHHHhcCcEEEEccCCCCCCCC----------------------CCceEEEecccchHHHHHHHHHHHhCCCeEEeC
Q 022979 47 KLEILARNKGISFVAIDQNRPLSDQ----------------------GPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILD 104 (289)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~pl~~Q----------------------gp~DvILHKltd~~~~~~l~~y~~~hP~v~ViD 104 (289)
.+...|++.|+..+-+|.+..-... ..+|+|+==..+..... +.....+.-.+++.-
T Consensus 15 ~~~~~Ak~~G~~vv~vd~~~~~~~~~~aD~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~-~~~~~~~~~~~~~g~ 93 (363)
T 4ffl_A 15 EAAYLSKKAGMKVVLVDKNPQALIRNYADEFYCFDVIKEPEKLLELSKRVDAVLPVNENLACIE-FLNSIKEKFSCPVLF 93 (363)
T ss_dssp HHHHHHHHTTCEEEEEESCTTCTTTTTSSEEEECCTTTCHHHHHHHHTSSSEEEECCCCHHHHH-HHHHHGGGCSSCBCC
T ss_pred HHHHHHHHCCCEEEEEeCCCCChhHhhCCEEEECCCCcCHHHHHHHhcCCCEEEECCCChhHHH-HHHHHHHHCCCccCC
Confidence 4666789999999999976332111 12344332211111222 222333334566778
Q ss_pred ChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEecc
Q 022979 105 PPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDR 184 (289)
Q Consensus 105 P~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~ 184 (289)
++++++...||..+-+.+++.. +.+|.+ ..+.||+|+||....| +..|.++.+.
T Consensus 94 ~~~a~~~~~dK~~~k~~l~~~g-------ip~~~~----------------~~ig~P~vvKp~~g~g---~~gv~~v~~~ 147 (363)
T 4ffl_A 94 DFEAYRISRDKKKSKDYFKSIG-------VPTPQD----------------RPSKPPYFVKPPCESS---SVGARIIYDD 147 (363)
T ss_dssp CHHHHHHHTSHHHHHHHHHHTT-------CCCCCB----------------SCSSSCEEEECSSCCT---TTTCEEEC--
T ss_pred CHHHHHHhhCHHHHHHHHHhcC-------CCCCCc----------------eecCCCEEEEECCCCC---CcCeEEeccH
Confidence 8999999999999999988654 334433 1357999999986555 5678999999
Q ss_pred CCCCCCCCCeeEEEeeecceeEEEEEEEcce
Q 022979 185 FSLSELEPPMLLQEFVNHGGILFKIYIIGET 215 (289)
Q Consensus 185 ~gL~~L~~P~VlQeFINH~gvLfKVYVvGd~ 215 (289)
+.+.....++++||||. |.-|=|.+++|.
T Consensus 148 ~~~~~~~~~~~~ee~i~--g~e~sv~~~~d~ 176 (363)
T 4ffl_A 148 KDLEGLEPDTLVEEYVE--GEVVSLEVVGDG 176 (363)
T ss_dssp ----CCCTTCEEEECCC--SEEEEEEEEEES
T ss_pred HHhhhhccchhhhhhcc--CcEEEEEEEEEC
Confidence 99999999999999996 566777777664
No 24
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=97.73 E-value=0.00023 Score=67.74 Aligned_cols=177 Identities=13% Similarity=0.139 Sum_probs=113.6
Q ss_pred CCCccEEEEEEe---chhhhhhccchH-HHHHHHhcCcEEEEccCCCCC-------------------------------
Q 022979 24 LQPERLVVGYAL---TSKKKKSFLQPK-LEILARNKGISFVAIDQNRPL------------------------------- 68 (289)
Q Consensus 24 ~~~~~~~VGy~l---~~kK~~~~~~~~-l~~~~~~~gi~~v~iD~~~pl------------------------------- 68 (289)
..+++.+|+..+ |.-+.=|+..-. +....++.|++.++||.++.-
T Consensus 18 ~~m~~~~v~vl~GG~S~E~evSl~Sa~~v~~al~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (386)
T 3e5n_A 18 GHMRKIRVGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPARIALHRSGRGVAL 97 (386)
T ss_dssp ---CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEECGGGSEESTTCTTTCEECCCCCCEEE
T ss_pred hhcCCceEEEEeccCCCCchhHHHHHHHHHHHhCccCCEEEEEEECCCCCEEecccchhhccccccccccccccccceee
Confidence 334566677655 333333444332 445456678888888876431
Q ss_pred ---------------CCCCCceEEEecccchHHH-HHHHHHHHhCCCeEEe-CChhHHhhhccHHHHHHHHhhcccCCCC
Q 022979 69 ---------------SDQGPFDVVLHKLSGMEWC-KIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCN 131 (289)
Q Consensus 69 ---------------~~Qgp~DvILHKltd~~~~-~~l~~y~~~hP~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~ 131 (289)
.....+|+|+-=+.+..-. ..+|.+.+.. ++.++ -++.++...+|+..+.+.+++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~D~vf~~lhG~~gEdg~iq~lle~~-gipy~G~~~~a~~~~~DK~~~k~~l~~~------ 170 (386)
T 3e5n_A 98 LPGAQQQQLRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMA-NLPFVGSGVLGSAVAMDKDMAKRVLRDA------ 170 (386)
T ss_dssp CTTCSSSCEEECC--CCCCCCSEEEEEECSHHHHSSHHHHHHHHT-TCCBSSCCHHHHHHHHBHHHHHHHHHHT------
T ss_pred ccCccccceeccccccccCCCCEEEEcCCCCCCcCHHHHHHHHHc-CCCccCCCHHHHHHHhCHHHHHHHHHHC------
Confidence 0123577776555443111 1355666554 56655 4578999999999999988754
Q ss_pred CceecCceEEEcCCC---CCchhHHHhcCCccceEeeeccccCCCCceeeEEEeccCCCCC-------CCCCeeEEEeee
Q 022979 132 GKVRVPRQMVITKDS---LSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVN 201 (289)
Q Consensus 132 ~~i~~P~~v~i~~~~---~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~-------L~~P~VlQeFIN 201 (289)
.|.+|+++.++... .++.+. ...+.||+|+||....|+ -.+.+|.+++.|.. ...++++||||.
T Consensus 171 -GIp~p~~~~~~~~~~~~~~~~~~--~~~lg~PvvVKP~~ggss---~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~ 244 (386)
T 3e5n_A 171 -RLAVAPFVCFDRHTAAHADVDTL--IAQLGLPLFVKPANQGSS---VGVSQVRTADAFAAALALALAYDHKVLVEAAVA 244 (386)
T ss_dssp -TCCBCCEEEEEHHHHTTCCHHHH--HHHHCSSEEEEESBSCSS---TTCEEECSGGGHHHHHHHHTTTCSEEEEEECCC
T ss_pred -CCCCCCEEEEeCcccchhhHHHH--HHhcCCCEEEEECCCCcC---CCEEEECCHHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 47789999885321 122222 235789999999987764 56788999988752 356899999998
Q ss_pred cceeEEEEEEEcce
Q 022979 202 HGGILFKIYIIGET 215 (289)
Q Consensus 202 H~gvLfKVYVvGd~ 215 (289)
|.=|=|.|+||.
T Consensus 245 --G~E~~v~vl~~~ 256 (386)
T 3e5n_A 245 --GREIECAVLGNA 256 (386)
T ss_dssp --SEEEEEEEECSS
T ss_pred --CeEEEEEEEeCC
Confidence 588889999885
No 25
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=97.72 E-value=8.4e-05 Score=70.38 Aligned_cols=126 Identities=16% Similarity=0.114 Sum_probs=90.8
Q ss_pred CceEEEecccc---hHHHHHHHHHHHhCCCeEEeCC-hhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCC
Q 022979 73 PFDVVLHKLSG---MEWCKIIEDYRQKHPEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLS 148 (289)
Q Consensus 73 p~DvILHKltd---~~~~~~l~~y~~~hP~v~ViDP-~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~ 148 (289)
.+|+|+-=+.+ +.- .+|.+.+.. ++.++-| +.++...+|+..+.+.+++. .|.+|+++.++.....
T Consensus 109 ~~D~vfp~lhG~~gEdg--~iq~lle~~-gip~vG~~~~a~~~~~DK~~~k~~l~~~-------GIp~p~~~~~~~~~~~ 178 (373)
T 3lwb_A 109 SVDVVFPVLHGPYGEDG--TIQGLLELA-GVPYVGAGVLASAVGMDKEFTKKLLAAD-------GLPVGAYAVLRPPRST 178 (373)
T ss_dssp TCSEEEECCEETTEECC--HHHHHHHHH-TCCBSSSCHHHHHHHHBHHHHHHHHHHT-------TCCBCCEEEECTTCCC
T ss_pred CccEEEECCCCCCCccH--HHHHHHHHc-CCCccCCcHHHHHHHcCHHHHHHHHHHc-------CcCCCCEEEEECcccc
Confidence 57888766532 221 244444443 5777776 78999999999999998754 4778999999643321
Q ss_pred -chhHHHhcCCccceEeeeccccCCCCceeeEEEeccCCCCC-------CCCCeeEEEeeecceeEEEEEEEcce
Q 022979 149 -IPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGET 215 (289)
Q Consensus 149 -~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~-------L~~P~VlQeFINH~gvLfKVYVvGd~ 215 (289)
.... ...+.||+|+||....| |..+.+|.+++.|.. ...++++||||. |.=|-|.|+|+.
T Consensus 179 ~~~~~--~~~lg~PvvVKP~~ggs---s~GV~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~ 246 (373)
T 3lwb_A 179 LHRQE--CERLGLPVFVKPARGGS---SIGVSRVSSWDQLPAAVARARRHDPKVIVEAAIS--GRELECGVLEMP 246 (373)
T ss_dssp CCHHH--HHHHCSCEEEEESBCST---TTTCEEECSGGGHHHHHHHHHTTCSSEEEEECCE--EEEEEEEEEECT
T ss_pred hhHHH--HHhcCCCEEEEeCCCCC---CCCEEEeCCHHHHHHHHHHHHhcCCCEEEeCCCC--CeEEEEEEEECC
Confidence 1222 34678999999998776 456788999998752 357899999999 788999999874
No 26
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=97.72 E-value=8.3e-05 Score=68.94 Aligned_cols=147 Identities=16% Similarity=0.244 Sum_probs=78.0
Q ss_pred HHHHHHHhcCcEEEEccCCCCCC-----CC-----------CCceEEEecccchHHHHHHHHHHHhCCCeEEeCChhHHh
Q 022979 47 KLEILARNKGISFVAIDQNRPLS-----DQ-----------GPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIK 110 (289)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~pl~-----~Q-----------gp~DvILHKltd~~~~~~l~~y~~~hP~v~ViDP~~~i~ 110 (289)
.+...+++.|+..+.+|.+.... +. ..+|+|+--..+... ..++ +.+. .+.-++++++
T Consensus 15 ~~~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~v~~~~e~~~~-~~~~-~l~~----~~g~~~~~~~ 88 (365)
T 2z04_A 15 MTILEGRKLGFKFHVLEDKENAPACRVADRCFRTGQISEFVDSCDIITYEFEHIKD-EVLE-KCES----KLIPNPQALY 88 (365)
T ss_dssp HHHHHHGGGTCEEEEECSSSSCHHHHHSSEEECGGGHHHHHHHCSEEEESSSCCCH-HHHH-HHTT----TBSSCTHHHH
T ss_pred HHHHHHHHCCCEEEEEeCCCCCchhhhccceeeHHHHHHHhhcCCEEEECCCCCcH-HHHH-HHhh----hcCCCHHHHH
Confidence 46667788999999999764321 10 136777754433222 2222 2222 5667789999
Q ss_pred hhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeecccc-CCCCceeeEEEeccCCCCC
Q 022979 111 HLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVD-GSAKSHELFLAYDRFSLSE 189 (289)
Q Consensus 111 ~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~-Gs~~SH~Maivf~~~gL~~ 189 (289)
...|+..+.+.+++. .|.+|++..++ .+++.+.+ ..+.||+|+||.... |+ ..+.++.+++.|..
T Consensus 89 ~~~dK~~~~~~l~~~-------gip~p~~~~~~--~~~~~~~~--~~~~~P~vvKp~~~~~~g---~Gv~~v~~~~el~~ 154 (365)
T 2z04_A 89 VKKSRIREKLFLKKH-------GFPVPEFLVIK--RDEIIDAL--KSFKLPVVIKAEKLGYDG---KGQYRIKKLEDANQ 154 (365)
T ss_dssp HHTCHHHHHHHHHTT-------TCCCCCEEEC------------------CEEEECC-----------------------
T ss_pred HhhCHHHHHHHHHHc-------CCCCCCEEEEc--HHHHHHHH--HhcCCCEEEEEcCCCcCC---CCeEEECCHHHHHH
Confidence 999999999998753 36688888775 22222222 246799999999876 64 46778888887763
Q ss_pred C------CCCeeEEEeeecceeEEEEEEEcc
Q 022979 190 L------EPPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 190 L------~~P~VlQeFINH~gvLfKVYVvGd 214 (289)
. ..++++||||.. |.=|-|.+++|
T Consensus 155 ~~~~~~~~~~~lvEe~i~~-g~e~sv~~~~d 184 (365)
T 2z04_A 155 VVKNHDKEESFIIEEFVKF-EAEISCIGVRD 184 (365)
T ss_dssp ----------CEEEECCCC-SEEEEEEEEEC
T ss_pred HHHHhccCCCEEEEccCCC-CEEEEEEEEEC
Confidence 2 368999999986 66788888864
No 27
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=97.71 E-value=0.0011 Score=62.87 Aligned_cols=141 Identities=13% Similarity=0.145 Sum_probs=88.5
Q ss_pred HHHHHHHhcCcEEEEccCCCC-CCCC-CCceEEEe-cc-cch-HHHHHHHHHHHhCC-CeEE--e---------------
Q 022979 47 KLEILARNKGISFVAIDQNRP-LSDQ-GPFDVVLH-KL-SGM-EWCKIIEDYRQKHP-EVTI--L--------------- 103 (289)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~p-l~~Q-gp~DvILH-Kl-td~-~~~~~l~~y~~~hP-~v~V--i--------------- 103 (289)
-+.+.|++.|+..+-+|-+.. ...+ .-.|-.++ .. .|. .+.+.+.+..++++ +.++ -
T Consensus 19 ~i~~aa~~lG~~vv~v~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~~~id~V~~~~e~~~~~~a~l~e~lg 98 (425)
T 3vot_A 19 FIFEEAERLGLKVTFFYNSAEDFPGNLPAVERCVPLPLFEDEEAAMDVVRQTFVEFPFDGVMTLFEPALPFTAKAAEALN 98 (425)
T ss_dssp HHHHHHHHTTCEEEEEEETTSCCCCSCTTEEEEEEECTTTCHHHHHHHHHHHHHHSCCSEEECCCGGGHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCEEEEEECCCcccccCHhhccEEEecCCCCCHHHHHHHHHHhhhhcCCCEEEECCchhHHHHHHHHHHcC
Confidence 356678999999999876432 2222 23454443 22 232 24455555544433 2111 1
Q ss_pred ---CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEE
Q 022979 104 ---DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL 180 (289)
Q Consensus 104 ---DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Mai 180 (289)
-++++++...|+..|-+.+++. .|.+|++..+++. +.+..+.+.||+|+||....| |..+.+
T Consensus 99 lpg~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~~-----~~~~~~~~g~P~vvKp~~g~g---s~Gv~~ 163 (425)
T 3vot_A 99 LPGLPFTTMENCRNKNKTRSILQQN-------GLNTPVFHEFHTL-----ADLENRKLSYPLVVKPVNGFS---SQGVVR 163 (425)
T ss_dssp CSSCCHHHHHHHHCHHHHHHHHHHT-------TCCCCCEEEESSG-----GGGTTCCCCSSEEEEESCC--------CEE
T ss_pred CCCCCHHHHHHhhCHHHHHHHHHHC-------CCCCCceeccCcH-----HHHHHhhcCCcEEEEECCCCC---CCCceE
Confidence 2567888899999888888754 3668999988532 122346789999999987544 678999
Q ss_pred EeccCCCCC------------------CCCCeeEEEeeec
Q 022979 181 AYDRFSLSE------------------LEPPMLLQEFVNH 202 (289)
Q Consensus 181 vf~~~gL~~------------------L~~P~VlQeFINH 202 (289)
+.+++.|.+ -..++++||||+-
T Consensus 164 v~~~~el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~i~G 203 (425)
T 3vot_A 164 VDDRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFIDG 203 (425)
T ss_dssp ECSHHHHHHHHHHHHHHTTSSHHHHHTTCCCEEEEECCCS
T ss_pred echHHHHHHHHHHHHhhhhhhhhhhccCCCcEEEEEEecC
Confidence 999887642 2468999999973
No 28
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=97.70 E-value=0.00012 Score=68.19 Aligned_cols=100 Identities=14% Similarity=0.124 Sum_probs=70.4
Q ss_pred EEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeecccc-CCCCceeeE
Q 022979 101 TILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVD-GSAKSHELF 179 (289)
Q Consensus 101 ~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~-Gs~~SH~Ma 179 (289)
.+.-++++++...|+..+.+.+++. .|.+|++..+++ .+++.+. ...+.||+|+||.... |+ ..+.
T Consensus 83 ~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~--~~~~g~P~vvKp~~~~~~g---~Gv~ 149 (369)
T 3aw8_A 83 PLYPPAKALEVAQDRLREKTFFQGL-------GVPTPPFHPVDG-PEDLEEG--LKRVGLPALLKTRRGGYDG---KGQA 149 (369)
T ss_dssp CBSSCHHHHHHHTCHHHHHHHHHHH-------TCCCCCEEEESS-HHHHHHH--HTTTCSSEEEEECCC---------EE
T ss_pred CcCCCHHHHHHhcCHHHHHHHHHHC-------CCCCCCceeeCC-HHHHHHH--HHHcCCCEEEEEcCCCCCc---ceEE
Confidence 5667888999999999988888764 366888888752 1111111 2357899999999876 64 5678
Q ss_pred EEeccCCCC----CC-CCCeeEEEeeecceeEEEEEEEcc
Q 022979 180 LAYDRFSLS----EL-EPPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 180 ivf~~~gL~----~L-~~P~VlQeFINH~gvLfKVYVvGd 214 (289)
++.+++.|. .+ ..++++||||.. |.-|-|.+++|
T Consensus 150 ~v~~~~el~~~~~~~~~~~~lvEe~i~~-g~e~sv~~~~d 188 (369)
T 3aw8_A 150 LVRTEEEALEALKALGGRGLILEGFVPF-DREVSLLAVRG 188 (369)
T ss_dssp EECSHHHHHHHHTTTCSSSEEEEECCCC-SEEEEEEEEEC
T ss_pred EECCHHHHHHHHHhcCCCcEEEEEcCCC-CEEEEEEEEEC
Confidence 888887654 33 468999999986 57788888875
No 29
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=97.64 E-value=0.00016 Score=67.50 Aligned_cols=151 Identities=10% Similarity=0.179 Sum_probs=92.7
Q ss_pred HHHHHHHhcCcEEEEccCCCCCCCC-----------------------CCceEEEecccchHHHHHHHHHHHhCCCeEEe
Q 022979 47 KLEILARNKGISFVAIDQNRPLSDQ-----------------------GPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL 103 (289)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~pl~~Q-----------------------gp~DvILHKltd~~~~~~l~~y~~~hP~v~Vi 103 (289)
.+...+++.|+..+.+|.+..-... ..+|+|+-=.-+. ..+.+ +..++. .+.+.
T Consensus 25 ~~~~a~~~~G~~v~~~~~~~~~~~~~~~d~~~~~~~~d~~~l~~~~~~~~~d~v~~~~e~~-~~~~~-~~l~~~-gi~~~ 101 (391)
T 1kjq_A 25 EVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDALRRVVELEKPHYIVPEIEAI-ATDML-IQLEEE-GLNVV 101 (391)
T ss_dssp HHHHHHHTTTCEEEEEESSTTCGGGGGSSEEEECCTTCHHHHHHHHHHHCCSEEEECSSCS-CHHHH-HHHHHT-TCEES
T ss_pred HHHHHHHHcCCEEEEEECCCCCchhhhccceEECCCCCHHHHHHHHHHcCCCEEEECCCcC-CHHHH-HHHHhC-CCCcC
Confidence 4666778899999999875321110 1344444322111 11112 222332 34556
Q ss_pred CChhHHhhhccHHHHHHHH-hhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEe
Q 022979 104 DPPDAIKHLHNRQSMLQDV-ADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAY 182 (289)
Q Consensus 104 DP~~~i~~l~dR~~~l~~l-~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf 182 (289)
-++++++...||..+.+.+ ++. .|.+|++..+++ .+++.+... .+.||+|+||....| +..+.++.
T Consensus 102 ~~~~~~~~~~dK~~~~~~l~~~~-------gip~p~~~~~~~-~~~~~~~~~--~~g~P~vvKp~~g~g---g~Gv~~v~ 168 (391)
T 1kjq_A 102 PCARATKLTMNREGIRRLAAEEL-------QLPTSTYRFADS-ESLFREAVA--DIGYPCIVKPVMSSS---GKGQTFIR 168 (391)
T ss_dssp SCHHHHHHHHSHHHHHHHHHTTS-------CCCBCCEEEESS-HHHHHHHHH--HHCSSEEEEESCC------CCCEEEC
T ss_pred CCHHHHHHhhCHHHHHHHHHHhC-------CCCCCCeeeeCC-HHHHHHHHH--hcCCCEEEEeCCCCC---CCCeEEEC
Confidence 7789999999999888887 533 466888888752 222222222 467999999986544 56788999
Q ss_pred ccCCCCC----C-------CCCeeEEEeeecceeEEEEEEEcc
Q 022979 183 DRFSLSE----L-------EPPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 183 ~~~gL~~----L-------~~P~VlQeFINH~gvLfKVYVvGd 214 (289)
+++.|.. + ..++++||||.. |.=|-|.++++
T Consensus 169 ~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~-g~E~sv~~~~~ 210 (391)
T 1kjq_A 169 SAEQLAQAWKYAQQGGRAGAGRVIVEGVVKF-DFEITLLTVSA 210 (391)
T ss_dssp SGGGHHHHHHHHHHHSGGGCCCEEEEECCCC-SEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHhhcccCCCCEEEEEecCC-CeEEEEEEEEe
Confidence 9887642 1 468999999985 55566666653
No 30
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=97.62 E-value=3.7e-05 Score=71.99 Aligned_cols=132 Identities=16% Similarity=0.221 Sum_probs=89.8
Q ss_pred CceEEEecccchHHH-HHHHHHHHhCCCeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCC-CCc
Q 022979 73 PFDVVLHKLSGMEWC-KIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDS-LSI 149 (289)
Q Consensus 73 p~DvILHKltd~~~~-~~l~~y~~~hP~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~-~~~ 149 (289)
.+|+++-=+.+..-. ..+|.+.+.. ++..+ =++.++...+||..+-+.+++. .|.+|+++.+.... ...
T Consensus 97 ~~D~vf~~l~G~~gEdg~~q~~le~~-gip~~G~~~~a~~~~~DK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~~ 168 (357)
T 4fu0_A 97 KVDLVFPVLHGKNGEDGTLQGIFELA-GIPVVGCDTLSSALCMDKDRAHKLVSLA-------GISVPKSVTFKRFNEEAA 168 (357)
T ss_dssp ECSEEEECCCSHHHHSSHHHHHHHHT-TCCBSSCCHHHHHHHHCHHHHHHHHHHT-------TCBCCCEEEEEGGGHHHH
T ss_pred CCCEEEECCcCccccCHHHHHHHHHC-CCcEECcCHHHHHHHhCHHHHHHHHHHC-------CCCCCCEEeecCCChHHH
Confidence 467765444332111 1355666554 66665 3577889999999999988754 46789998885321 111
Q ss_pred hhHHHhcCCccceEeeeccccCCCCceeeEEEeccCCCC-------CCCCCeeEEEeeecceeEEEEEEEcceEEE
Q 022979 150 PDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLS-------ELEPPMLLQEFVNHGGILFKIYIIGETIKV 218 (289)
Q Consensus 150 ~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~-------~L~~P~VlQeFINH~gvLfKVYVvGd~v~v 218 (289)
.+. ..+.+.||+|+||....| |..|.+|.+++.|. ....++++|+||+ |.-+=|.|+|+....
T Consensus 169 ~~~-~~~~lg~PvvVKP~~gg~---s~Gv~~v~~~~el~~~~~~a~~~~~~vlvE~~i~--G~e~~v~vl~~~~~~ 238 (357)
T 4fu0_A 169 MKE-IEANLTYPLFIKPVRAGS---SFGITKVIEKQELDAAIELAFEHDTEVIVEETIN--GFEVGCAVLGIDELI 238 (357)
T ss_dssp HHH-HHHHCCSSEEEEETTCSS---STTCEEESSHHHHHHHHHHHTTTCSEEEEEECCC--SEEEEEEEEESSSEE
T ss_pred HHH-HHHhcCCCEEEEECCCCC---CCceEEeccHHhHHHHHHHHhccCCeEEEEEecC--CEEEEEEEEecCCce
Confidence 111 134689999999976444 57899999999885 3457899999995 788889999886443
No 31
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=97.61 E-value=0.00046 Score=63.34 Aligned_cols=109 Identities=15% Similarity=0.177 Sum_probs=75.2
Q ss_pred CCceEEEecccchH-HHHHHHHHHHhCCCeEEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCch
Q 022979 72 GPFDVVLHKLSGME-WCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIP 150 (289)
Q Consensus 72 gp~DvILHKltd~~-~~~~l~~y~~~hP~v~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~ 150 (289)
.++|+++-=.++++ ..+.+.+..+. +...+.-++++++...|+..+.+.+++ .|.+|++..
T Consensus 68 ~~~D~~~~i~~~ed~~l~~~~~~l~~-~g~~~g~~~~~~~~~~dK~~~~~~l~~--------Gip~p~~~~--------- 129 (305)
T 3df7_A 68 EKSDAFLIIAPEDDFLLYTLTKKAEK-YCENLGSSSRAIAVTSDKWELYKKLRG--------EVQVPQTSL--------- 129 (305)
T ss_dssp TTCSEEEEECCCGGGHHHHHHHHHHT-TSEESSCCHHHHHHHTSHHHHHHHHTT--------TSCCCCEES---------
T ss_pred HhcCEEEEEccCCcHHHHHHHHHHHh-cCCccCCCHHHHHHhcCHHHHHHHHHh--------CCCCCCEec---------
Confidence 36776544344332 33334444444 347889999999999999999999864 356777763
Q ss_pred hHHHhcCCccceEeeeccccCCCCceeeEEEeccCCCCCCCCCeeEEEeeecceeEEEEEEEcc
Q 022979 151 DQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 151 ~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~L~~P~VlQeFINH~gvLfKVYVvGd 214 (289)
..+.||+|+||....|+ ..+.++.+ ...++++||||. |.-|=|.++++
T Consensus 130 -----~~~~~P~vvKP~~g~gs---~Gv~~v~~------~~~~~lvEe~I~--G~e~sv~v~~g 177 (305)
T 3df7_A 130 -----RPLDCKFIIKPRTACAG---EGIGFSDE------VPDGHIAQEFIE--GINLSVSLAVG 177 (305)
T ss_dssp -----SCCSSSEEEEESSCC-------CBCCSS------CCTTEEEEECCC--SEEEEEEEEES
T ss_pred -----ccCCCCEEEEeCCCCCC---CCEEEEec------CCCCEEEEeccC--CcEEEEEEEeC
Confidence 25789999999987765 44555555 457899999999 67788888853
No 32
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=97.61 E-value=0.00016 Score=69.03 Aligned_cols=175 Identities=13% Similarity=0.130 Sum_probs=111.4
Q ss_pred cEEEEEEe---chhhhhhccchH-HHHHHHhcCcEEEEccCCCC------------------CCCC--------------
Q 022979 28 RLVVGYAL---TSKKKKSFLQPK-LEILARNKGISFVAIDQNRP------------------LSDQ-------------- 71 (289)
Q Consensus 28 ~~~VGy~l---~~kK~~~~~~~~-l~~~~~~~gi~~v~iD~~~p------------------l~~Q-------------- 71 (289)
+.+|+..+ |.-+.=|+..-. +.....+.|++.++||.++. +...
T Consensus 37 ~~~v~vl~GG~S~E~evSl~Sa~~v~~al~~~~~~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (383)
T 3k3p_A 37 KETLVLLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQAGDFIKTQEFDSQPSETDKLMTNDTIIASQKIKPSDI 116 (383)
T ss_dssp CEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEEEEESSCCC--CCCCCTTSCCGGGEECGGGG
T ss_pred CCeEEEEeCCCCCcchHHHHHHHHHHHHhhhcCCEEEEEEecCCCCEEeccccccccccccccccccccccccccccccc
Confidence 44677766 333444444332 55555678999999998743 1010
Q ss_pred -CCceEEEecccchHH-HHHHHHHHHhCCCeEEeC-ChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCC
Q 022979 72 -GPFDVVLHKLSGMEW-CKIIEDYRQKHPEVTILD-PPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLS 148 (289)
Q Consensus 72 -gp~DvILHKltd~~~-~~~l~~y~~~hP~v~ViD-P~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~ 148 (289)
..+|+|+-=+-+..= .-.+|.+.+.. ++.++- ++.++...+|+..+.+.+++.. .|.+|++..++... .
T Consensus 117 ~~~~D~vf~~lhG~~GEdg~iq~lle~~-gipy~G~~~~a~~~~~DK~~~k~~l~~~G------~Ipvp~~~~~~~~~-~ 188 (383)
T 3k3p_A 117 YEEEAVVFPVLHGPMGEDGSIQGFLEVL-KMPYVGTNILSSSVAMDKITTNQVLESAT------TIPQVAYVALIEGE-P 188 (383)
T ss_dssp CCTTCEEEEECCSTTTSSSHHHHHHHHT-TCCBSSCCHHHHHHHHCHHHHHHHHHHHC------CCCBCCEEEEETTS-C
T ss_pred ccCCCEEEEcCCCCCcchHHHHHHHHHc-CCCccCCCHHHHHHHhCHHHHHHHHHhCC------CcCCCCEEEEeCcc-c
Confidence 146887765543210 01345555554 566664 5788999999999999887642 17789999885332 1
Q ss_pred chhHH--HhcCCccceEeeeccccCCCCceeeEEEeccCCCCC-------CCCCeeEEEeeecceeEEEEEEEcce
Q 022979 149 IPDQV--FEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGET 215 (289)
Q Consensus 149 ~~~~l--~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~-------L~~P~VlQeFINH~gvLfKVYVvGd~ 215 (289)
..+.+ ....+.||+|+||....| |..+.++.+++.|.. ...++++||||+ |.=|-|.|+||.
T Consensus 189 ~~~~~~~~~~~lg~PvvVKP~~ggs---s~GV~~v~~~~el~~al~~a~~~~~~vlVEe~I~--G~E~~v~vl~d~ 259 (383)
T 3k3p_A 189 LESKLAEVEEKLIYPVFVKPANMGS---SVGISKAENRTDLKQAIALALKYDSRVLIEQGVD--AREIEVGILGNT 259 (383)
T ss_dssp HHHHHHHHHHHCCSSEEEEECC---------CEEESSHHHHHHHHHHHHHHCSEEEEEECCC--SEEEEEEEEESS
T ss_pred hhHHHHHHHHhcCCCEEEEeCCCCC---CCCEEEECCHHHHHHHHHHHHhCCCeEEEEcCCC--CeEEEEEEEeCC
Confidence 11111 124688999999988665 567888999887752 246899999998 788999999974
No 33
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=97.58 E-value=0.00029 Score=73.10 Aligned_cols=152 Identities=14% Similarity=0.122 Sum_probs=103.4
Q ss_pred hHHHHHHHhcCcEEEEccCCCCCCCCCCceEEEecccchHHHHHHHHHHHhCCC-eEEeCChhHHhhhccHHHHHHHHhh
Q 022979 46 PKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPE-VTILDPPDAIKHLHNRQSMLQDVAD 124 (289)
Q Consensus 46 ~~l~~~~~~~gi~~v~iD~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~~hP~-v~ViDP~~~i~~l~dR~~~l~~l~~ 124 (289)
+.+++.|+++||+++.++.+.++-.-|--|-+- .+ -|. .+.-++..++...-|+..+.+.+.+
T Consensus 436 ~~Iv~~A~~~gid~~vlg~e~~l~~lg~~~~~~-~i---------------g~~~~t~~~s~~aa~~~~DK~~tk~lL~~ 499 (757)
T 3ln7_A 436 QALLFDVIQKGIHTEILDENDQFLCLKYGDHIE-YV---------------KNGNMTSHDSYISPLIMENKVVTKKVLQK 499 (757)
T ss_dssp HHHHHHHHHHTCEEEEEETTTTEEEEEETTEEE-EE---------------ETTTBCSSSBSHHHHHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEECCCHHHHHhcccccce-ee---------------ccCccCCCCHHHHHHHhcCHHHHHHHHHH
Confidence 358889999999999999888765333111110 00 133 3445677778777799888888875
Q ss_pred cccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEE----eccCCCCC-------CCCC
Q 022979 125 LNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLA----YDRFSLSE-------LEPP 193 (289)
Q Consensus 125 l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maiv----f~~~gL~~-------L~~P 193 (289)
. .|.+|++.++.+. ++..+.. ...+.||+|+||....|+ ..|.++ .+.+.|.. ...+
T Consensus 500 ~-------GIPvP~~~~~~~~-~ea~~~~-~~~~g~PvVVKP~~g~~G---~GV~iv~~~v~~~eel~~al~~a~~~~~~ 567 (757)
T 3ln7_A 500 A-------GFNVPQSVEFTSL-EKAVASY-ALFENRAVVIKPKSTNYG---LGITIFQQGVQNREDFAKALEIAFREDKE 567 (757)
T ss_dssp H-------TCCCCCEEEESCH-HHHHHGG-GGSSSSCEEEEESSCSTT---TTCEECSSCCCCHHHHHHHHHHHHHHCSS
T ss_pred C-------CcCCCCEEEECCH-HHHHHHH-HHhcCCCEEEEeCCCCCC---CCeEEecCCCCCHHHHHHHHHHHHhcCCc
Confidence 4 4678999888521 1111111 135789999999986664 567777 66666542 2468
Q ss_pred eeEEEeeecceeEEEEEEEcceEEEEEecCCCCC
Q 022979 194 MLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNV 227 (289)
Q Consensus 194 ~VlQeFINH~gvLfKVYVvGd~v~vv~R~SLpn~ 227 (289)
+++||||. |.=|-|+|+|+++.-+.+.--+++
T Consensus 568 vlVEefI~--G~Ei~v~Vlggkvvaai~R~p~~V 599 (757)
T 3ln7_A 568 VMVEDYLV--GTEYRFFVLGDETLAVLLRVPANV 599 (757)
T ss_dssp EEEEECCC--SEEEEEEEETTEEEEEEEECCSEE
T ss_pred EEEEEcCC--CcEEEEEEECCEEEEEEEEecccc
Confidence 99999995 689999999999887655554543
No 34
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=97.56 E-value=0.00013 Score=70.15 Aligned_cols=152 Identities=13% Similarity=0.091 Sum_probs=95.3
Q ss_pred hHHHHHHHhcCcEEEEccCCCCC-----CC---CC-------------CceEEEecccchHHH-HHHHHHHHhCCCeEEe
Q 022979 46 PKLEILARNKGISFVAIDQNRPL-----SD---QG-------------PFDVVLHKLSGMEWC-KIIEDYRQKHPEVTIL 103 (289)
Q Consensus 46 ~~l~~~~~~~gi~~v~iD~~~pl-----~~---Qg-------------p~DvILHKltd~~~~-~~l~~y~~~hP~v~Vi 103 (289)
..+...|++.|+.++-+|.+..- .+ .+ ..|+|+ ++.+.. ..+-++.++. ..+.
T Consensus 48 ~~~~~aa~~lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~~~D~V~---~~~e~~~~~~~~~l~~~--~~vg 122 (419)
T 4e4t_A 48 RMFCFAAQSMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCEAVS---TEFENVPAASLDFLART--TFVA 122 (419)
T ss_dssp HHHHHHHHHTTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHHHCSEEE---ECCTTCCHHHHHHHHTT--SEES
T ss_pred HHHHHHHHHCCCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHhcCCEEE---EccCcCCHHHHHHHHcc--CCcC
Confidence 34677788999999999865221 00 01 235555 221111 1222333344 4777
Q ss_pred CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHh--cCCccceEeeeccccCCCCceeeEEE
Q 022979 104 DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFE--AGLKLPLVAKPLVVDGSAKSHELFLA 181 (289)
Q Consensus 104 DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~--agl~fP~I~Kp~vA~Gs~~SH~Maiv 181 (289)
-++++++...||..+-+.++++ .|.+|++..+++. +++.+...+ ..+ ||+|+||.. +...+..+.++
T Consensus 123 p~~~a~~~~~dK~~~k~~l~~~-------Gip~p~~~~v~~~-~e~~~~~~~~~~~~-~P~VvKp~~--~g~~G~Gv~~v 191 (419)
T 4e4t_A 123 PAGRCVAVAQDRIAEKRFIEAS-------GVPVAPHVVIESA-AALAALDDAALDAV-LPGILKTAR--LGYDGKGQVRV 191 (419)
T ss_dssp SCHHHHHHHTCHHHHHHHHHHT-------TCCBCCEEEECSH-HHHHTSCHHHHHTT-CSEEEEESS--SCCTTTTEEEE
T ss_pred CCHHHHHHhcCHHHHHHHHHHc-------CcCCCCeEEECCH-HHHHHHHHhhcccc-CCEEEEecC--CCCCCCceEEE
Confidence 8899999999999999998765 3678999888521 111111111 117 999999962 22345788999
Q ss_pred eccCCCCC----C-CCCeeEEEeeecceeEEEEEEEcc
Q 022979 182 YDRFSLSE----L-EPPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 182 f~~~gL~~----L-~~P~VlQeFINH~gvLfKVYVvGd 214 (289)
.+++.|.. + ..++++||||+- +.=+=|.+++|
T Consensus 192 ~~~~el~~a~~~~~~~~~lvEe~i~~-~~Eisv~v~~~ 228 (419)
T 4e4t_A 192 STAREARDAHAALGGVPCVLEKRLPL-KYEVSALIARG 228 (419)
T ss_dssp CSHHHHHHHHHHTTTCCEEEEECCCE-EEEEEEEEEEC
T ss_pred CCHHHHHHHHHhcCCCcEEEeecCCC-CeEEEEEEEEc
Confidence 99887652 2 468999999985 44455666643
No 35
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=97.51 E-value=0.00091 Score=63.19 Aligned_cols=149 Identities=10% Similarity=0.038 Sum_probs=94.2
Q ss_pred HHHHHHHhcCcEEEEccCCCCCCCCC-CceEEEecccchHHHHHHHHHHHhCCCeEEeCChhHHhhhccHHHHHHHHhhc
Q 022979 47 KLEILARNKGISFVAIDQNRPLSDQG-PFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADL 125 (289)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~pl~~Qg-p~DvILHKltd~~~~~~l~~y~~~hP~v~ViDP~~~i~~l~dR~~~l~~l~~l 125 (289)
-+..-|++.|+.++..|.+.|-.-.+ ..|+|.--..... .+.++...+.. .|.-++++++...||..+-+.++++
T Consensus 15 m~~~aa~~lG~~v~~~~~~a~~~~~~l~~d~it~e~e~v~-~~~l~~l~~~~---~v~p~~~a~~~~~DK~~~k~~l~~~ 90 (355)
T 3eth_A 15 MLRQAGEPLGIAVWPVGLDAEPAAVPFQQSVITAEIERWP-ETALTRQLARH---PAFVNRDVFPIIADRLTQKQLFDKL 90 (355)
T ss_dssp HHHHHHGGGTCEEEEECTTCCGGGCCCTTSEEEESCSCCC-CCHHHHHHHTC---TTBTTTTHHHHHHSHHHHHHHHHHT
T ss_pred HHHHHHHHCCCEEECCCCCCCceEEcccCCEEEECcCCcC-HHHHHHHHhcC---CcCCCHHHHHHhcCHHHHHHHHHHC
Confidence 35666788899994333332211111 4566654433221 12233333332 6788899999999999999888764
Q ss_pred ccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEec--cCCCCC--CCCCeeEEEeee
Q 022979 126 NLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYD--RFSLSE--LEPPMLLQEFVN 201 (289)
Q Consensus 126 ~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~--~~gL~~--L~~P~VlQeFIN 201 (289)
.|.+|++..+++ .+++.+... .+.||+|+||... | ..+..+.+|.+ ++.|.. +. ++++||||+
T Consensus 91 -------GIptp~~~~v~~-~~e~~~~~~--~~G~P~VvKp~~~-G-~~GkGv~~v~~~~~~el~~a~~~-~vivEe~I~ 157 (355)
T 3eth_A 91 -------HLPTAPWQLLAE-RSEWPAVFD--RLGELAIVKRRTG-G-YDGRGQWRLRANETEQLPAECYG-ECIVEQGIN 157 (355)
T ss_dssp -------TCCBCCEEEECC-GGGHHHHHH--HHCSEEEEEESSS-C-CTTTTEEEEETTCGGGSCGGGTT-TEEEEECCC
T ss_pred -------ccCCCCEEEECC-HHHHHHHHH--HcCCCEEEEecCC-C-CCCCeEEEEcCCCHHHHHHHhhC-CEEEEEccC
Confidence 467899988852 222333333 4679999999863 2 24588999999 888764 34 799999999
Q ss_pred cceeEEEEEEEc
Q 022979 202 HGGILFKIYIIG 213 (289)
Q Consensus 202 H~gvLfKVYVvG 213 (289)
.+ .=+=|-+++
T Consensus 158 ~~-~Eisv~v~~ 168 (355)
T 3eth_A 158 FS-GEVSLVGAR 168 (355)
T ss_dssp CS-EEEEEEEEE
T ss_pred CC-cEEEEEEEE
Confidence 53 334455553
No 36
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=97.51 E-value=0.00029 Score=66.11 Aligned_cols=127 Identities=12% Similarity=0.200 Sum_probs=88.8
Q ss_pred CCceEEEecccc---hHHHHHHHHHHHhCCCeEEeCC-hhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCC-
Q 022979 72 GPFDVVLHKLSG---MEWCKIIEDYRQKHPEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDS- 146 (289)
Q Consensus 72 gp~DvILHKltd---~~~~~~l~~y~~~hP~v~ViDP-~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~- 146 (289)
..+|+|+-=+.+ +.- .+|.+.+.. ++.++-| +.++...+|+..+.+.+++. .|.+|++..++...
T Consensus 97 ~~~D~vf~~lhG~~gEdg--~iq~~le~~-gip~~G~~~~a~~~~~DK~~~k~~l~~~-------Gip~p~~~~~~~~~~ 166 (364)
T 3i12_A 97 PTVDVIFPIVHGTLGEDG--SLQGMLRVA-NLPFVGSDVLSSAACMDKDVAKRLLRDA-------GLNIAPFITLTRTNR 166 (364)
T ss_dssp CCCSEEEECCCSTTTTSS--HHHHHHHHT-TCCBSSCCHHHHHHHHCHHHHHHHHHHT-------TCCBCCEEEEETTTG
T ss_pred CCCCEEEEeCCCCCCcCH--HHHHHHHHc-CCCccCCCHHHHHHHHCHHHHHHHHHHC-------CCCCCCEEEEEcccc
Confidence 357888655433 321 355565554 5666654 78999999999999998754 47789999885332
Q ss_pred --CCchhHHHhcCCccceEeeeccccCCCCceeeEEEeccCCCCC-------CCCCeeEEEeeecceeEEEEEEEcce
Q 022979 147 --LSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGET 215 (289)
Q Consensus 147 --~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~-------L~~P~VlQeFINH~gvLfKVYVvGd~ 215 (289)
.++.+.. ..+.||+|+||....| |..+.++.+++.|.. ...++++||||. |.=|=|.|+||.
T Consensus 167 ~~~~~~~~~--~~lg~PvvVKP~~ggs---s~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~ 237 (364)
T 3i12_A 167 HAFSFAEVE--SRLGLPLFVKPANQGS---SVGVSKVANEAQYQQAVALAFEFDHKVVVEQGIK--GREIECAVLGND 237 (364)
T ss_dssp GGCCHHHHH--HHHCSSEEEEETTCCT---TTTCEEESSHHHHHHHHHHHHHHCSEEEEEECCC--SEEEEEEEEESS
T ss_pred chhhHHHHH--HhcCCCEEEEECCCCC---CcCeEEeCCHHHHHHHHHHHHhcCCcEEEEcCcC--CeEEEEEEEeCC
Confidence 1222222 3467999999997665 466788999887752 256899999998 477888999875
No 37
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=97.36 E-value=0.0012 Score=62.35 Aligned_cols=129 Identities=11% Similarity=0.105 Sum_probs=85.8
Q ss_pred CceEEEecccchHH-HHHHHHHHHhCCCeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCch
Q 022979 73 PFDVVLHKLSGMEW-CKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIP 150 (289)
Q Consensus 73 p~DvILHKltd~~~-~~~l~~y~~~hP~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~ 150 (289)
.+|+|+--+.+..- ...++.+.+.. ++.++ -++.++...+|+..+.+.+++. .|.+|+++.++.... .
T Consensus 107 ~~D~v~~~lhg~~gedg~i~~~le~~-gip~~G~~~~a~~~~~DK~~~k~~l~~~-------Gip~p~~~~~~~~~~--~ 176 (367)
T 2pvp_A 107 ELPLVINLVHGGDGEDGKLASLLEFY-RIAFIGPRIEASVLSYNKYLTKLYAKDL-------GIKTLDYVLLNEKNR--A 176 (367)
T ss_dssp ECCSEEECCCSTTTTSSHHHHHHHHT-TCCEESCCHHHHHHHHSHHHHHHHHHHH-------TCBCCCCEEECTTTG--G
T ss_pred CCCEEEEcCCCCCccHHHHHHHHHHc-CCCccCCCHHHHHHHcCHHHHHHHHHHC-------CcCCCCEEEEeCCch--H
Confidence 45666544433210 01245555544 67666 6689999999999999998864 366899988853321 0
Q ss_pred hHHHhcCCccceEeeeccccCCCCceeeEEEeccCCCCC-------CCCCeeEEEeeecceeE---EEEEEEcceE
Q 022979 151 DQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGIL---FKIYIIGETI 216 (289)
Q Consensus 151 ~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~-------L~~P~VlQeFINH~gvL---fKVYVvGd~v 216 (289)
+..+...+.||+|+||....|+ -.+.++.+++.|.. ...++++||||.- ..= +-+.| ++.+
T Consensus 177 ~~~~~~~lg~PvvVKP~~g~ss---~Gv~~v~~~~el~~a~~~~~~~~~~vlVEe~I~G-~~E~svi~v~v-~g~~ 247 (367)
T 2pvp_A 177 NALDLMNFNFPFIVKPSNAGSS---LGVNVVKEEKELIYALDSAFEYSKEVLIEPFIQG-VKEYNLAGCKI-KKDF 247 (367)
T ss_dssp GHHHHCCSCSCEEEEESSCCTT---TTCEEESSTTSHHHHHHHHTTTCSCEEEEECCTT-CEEEEEEEEEE-TTEE
T ss_pred HHHHHhccCCCEEEEECCCCCC---CCEEEECCHHHHHHHHHHHHhcCCcEEEEeCCCC-CceeeEEEEEE-CCEE
Confidence 1111356889999999987664 55788999988752 3578999999983 144 66777 7653
No 38
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=97.31 E-value=0.00052 Score=65.21 Aligned_cols=150 Identities=13% Similarity=0.195 Sum_probs=90.3
Q ss_pred HHHHHHHhcCcEEEEccCCCCC--------------CC---------CCCceEEEecccchHHHHHHHHHHHhCCCeEEe
Q 022979 47 KLEILARNKGISFVAIDQNRPL--------------SD---------QGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL 103 (289)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~pl--------------~~---------Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~Vi 103 (289)
.+...+++.|+..+.+|.+..- .+ +..+|+|+--.-+.. .+.+ +..++. .+.+.
T Consensus 33 ~~~~a~~~~G~~v~~v~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~~d~V~~~~e~~~-~~~~-~~l~~~-gi~~~ 109 (433)
T 2dwc_A 33 EIAIEAQRLGVEVVAVDRYANAPAMQVAHRSYVGNMMDKDFLWSVVEREKPDAIIPEIEAIN-LDAL-FEFEKD-GYFVV 109 (433)
T ss_dssp HHHHHHHHTTCEEEEEESSTTCHHHHHSSEEEESCTTCHHHHHHHHHHHCCSEEEECSSCSC-HHHH-HHHHHT-TCCBS
T ss_pred HHHHHHHHCCCEEEEEECCCCChhhhhcceEEECCCCCHHHHHHHHHHcCCCEEEECcccCC-HHHH-HHHHhc-CCeeC
Confidence 4666778899999999876321 00 124555554332111 1222 222332 34456
Q ss_pred CChhHHhhhccHHHHHHHH-hhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEe
Q 022979 104 DPPDAIKHLHNRQSMLQDV-ADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAY 182 (289)
Q Consensus 104 DP~~~i~~l~dR~~~l~~l-~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf 182 (289)
-++++++...||..+.+.+ ++. .|.+|++..+++ .+++.+... .+.||+|+||....| +..+.++.
T Consensus 110 ~~~~~~~~~~dK~~~k~~l~~~~-------gip~p~~~~~~~-~~~~~~~~~--~~g~P~vvKp~~g~g---g~Gv~~v~ 176 (433)
T 2dwc_A 110 PNARATWIAMHRERLRETLVKEA-------KVPTSRYMYATT-LDELYEACE--KIGYPCHTKAIMSSS---GKGSYFVK 176 (433)
T ss_dssp SCHHHHHHHHCHHHHHHHHHHTS-------CCCCCCEEEESS-HHHHHHHHH--HHCSSEEEEECCC---------EEEC
T ss_pred CCHHHHHHhhCHHHHHHHHHHhc-------CCCCCCeeEeCC-HHHHHHHHH--hcCCCEEEEECCCcC---CCCeEEEC
Confidence 6789999999999888887 543 366888888752 212222222 367999999986444 57788999
Q ss_pred ccCCCC----CC-------CCCeeEEEeeecceeEEEEEEEc
Q 022979 183 DRFSLS----EL-------EPPMLLQEFVNHGGILFKIYIIG 213 (289)
Q Consensus 183 ~~~gL~----~L-------~~P~VlQeFINH~gvLfKVYVvG 213 (289)
+++.|. .+ ..++++||||+. |.=|-|.+++
T Consensus 177 ~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~-g~E~sv~~~~ 217 (433)
T 2dwc_A 177 GPEDIPKAWEEAKTKARGSAEKIIVEEHIDF-DVEVTELAVR 217 (433)
T ss_dssp SGGGHHHHHHC---------CCEEEEECCCC-SEEEEECCEE
T ss_pred CHHHHHHHHHHHHhhcccCCCCEEEEccCCC-CeeEEEEEEe
Confidence 988764 22 368999999985 4556666664
No 39
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=97.30 E-value=0.00057 Score=65.98 Aligned_cols=109 Identities=11% Similarity=0.120 Sum_probs=74.2
Q ss_pred HHHHHHhCCCeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeecc
Q 022979 90 IEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLV 168 (289)
Q Consensus 90 l~~y~~~hP~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~v 168 (289)
+.+..++. .+.++ -+.++++...|+..+.+.+++. .|.+|++..+++ .++..+.+. .+.||+|+||..
T Consensus 99 ~~~~l~~~-Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~-------GIp~p~~~~~~~-~~ea~~~~~--~~g~PvVvKp~~ 167 (442)
T 3lp8_A 99 LSDALTEE-GILVFGPSKAAARLESSKGFTKELCMRY-------GIPTAKYGYFVD-TNSAYKFID--KHKLPLVVKADG 167 (442)
T ss_dssp HHHHHHHT-TCEEESCCHHHHHHHHCHHHHHHHHHHH-------TCCBCCEEEESS-HHHHHHHHH--HSCSSEEEEESS
T ss_pred HHHHHHhc-CCcEecCCHHHHHHhhCHHHHHHHHHHC-------CCCCCCEEEECC-HHHHHHHHH--HcCCcEEEeECC
Confidence 33444443 56666 6778888888888888888754 366899988852 222222222 478999999986
Q ss_pred ccCCCCceeeEEEeccCCCCC----------C---CCCeeEEEeeecceeEEEEEEEcc
Q 022979 169 VDGSAKSHELFLAYDRFSLSE----------L---EPPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 169 A~Gs~~SH~Maivf~~~gL~~----------L---~~P~VlQeFINH~gvLfKVYVvGd 214 (289)
..| +..+.++.+.+.+.+ . ..++++||||. |.=|=|.++.|
T Consensus 168 ~~g---g~GV~iv~~~eel~~a~~~~~~~~~~g~~~~~vlvEe~i~--G~E~sv~~~~d 221 (442)
T 3lp8_A 168 LAQ---GKGTVICHTHEEAYNAVDAMLVHHKFGEAGCAIIIEEFLE--GKEISFFTLVD 221 (442)
T ss_dssp CCT---TTSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC--SEEEEEEEEEE
T ss_pred CCC---CCeEEEeCCHHHHHHHHHHHHhhcccCCCCCeEEEEEeec--CcEEEEEEEEC
Confidence 544 567889988876631 1 25899999999 56677777755
No 40
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=97.30 E-value=0.00066 Score=65.27 Aligned_cols=134 Identities=12% Similarity=0.096 Sum_probs=89.7
Q ss_pred HHHHHHHhcCcEEEEccCCCCCCCCCCceEEEecccchHHHHHHHHHHHhCCCeEEe-CChhHHhhhccHHHHHHHHhhc
Q 022979 47 KLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADL 125 (289)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~Vi-DP~~~i~~l~dR~~~l~~l~~l 125 (289)
.+.++|+++++++|-+- ++......+.+..++. .+.++ -+.++++...|+..+.+.+++.
T Consensus 58 ~l~~~a~~~~id~vv~g------------------~e~~l~~~~~~~l~~~-Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~ 118 (431)
T 3mjf_A 58 GLLAFAQSHDIGLTIVG------------------PEAPLVIGVVDAFRAA-GLAIFGPTQAAAQLEGSKAFTKDFLARH 118 (431)
T ss_dssp HHHHHHHHTTEEEEEEC------------------SHHHHHTTHHHHHHHT-TCCEESCCHHHHHHHHCHHHHHHHHHHT
T ss_pred HHHHHHHHhCcCEEEEC------------------CchHHHHHHHHHHHhc-CCCeeCCCHHHHHHhhCHHHHHHHHHHc
Confidence 46667777766655432 2222223344444443 56666 7889999999999999998764
Q ss_pred ccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEeccCCCCC----C---------CC
Q 022979 126 NLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE----L---------EP 192 (289)
Q Consensus 126 ~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~----L---------~~ 192 (289)
.|.+|++..+++ .++..+.+. .+.||+|+||....| +..+.++.+++.+.. + ..
T Consensus 119 -------GIptp~~~~~~~-~~ea~~~~~--~~g~PvVvKp~~~~g---g~GV~iv~~~~el~~a~~~~~~~~~~g~~~~ 185 (431)
T 3mjf_A 119 -------NIPSAEYQNFTD-VEAALAYVR--QKGAPIVIKADGLAA---GKGVIVAMTQEEAETAVNDMLAGNAFGDAGH 185 (431)
T ss_dssp -------TCSBCCEEEESC-HHHHHHHHH--HHCSSEEEEESSSCT---TCSEEEECSHHHHHHHHHHHHTTHHHHCCCC
T ss_pred -------CCCCCCeEeeCC-HHHHHHHHH--HcCCeEEEEECCCCC---CCcEEEeCCHHHHHHHHHHHHhhccccCCCC
Confidence 366899988852 222222222 467999999985544 577889998886632 1 35
Q ss_pred CeeEEEeeecceeEEEEEEEcc
Q 022979 193 PMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 193 P~VlQeFINH~gvLfKVYVvGd 214 (289)
++++||||. |.=|=|.+++|
T Consensus 186 ~vlvEe~i~--G~E~sv~~~~d 205 (431)
T 3mjf_A 186 RIVVEEFLD--GEEASFIVMVD 205 (431)
T ss_dssp CEEEEECCC--SEEEEEEEEEE
T ss_pred eEEEEEeeC--CcEEEEEEEEc
Confidence 899999999 57777777765
No 41
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=97.24 E-value=0.00048 Score=65.14 Aligned_cols=101 Identities=11% Similarity=0.140 Sum_probs=71.7
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCcee
Q 022979 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHE 177 (289)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~ 177 (289)
.+.++ -++++++...|+..+.+.+++. .|.+|++..+++ .+++.+.+. .+.||+|+||....| +..
T Consensus 85 gi~~~g~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~~-~~~~~~~~~--~~~~P~vvKp~~~~g---g~G 151 (417)
T 2ip4_A 85 GLLLFGPTQKAAMIEGSKAFAKGLMERY-------GIPTARYRVFRE-PLEALAYLE--EVGVPVVVKDSGLAA---GKG 151 (417)
T ss_dssp TCCEESCCHHHHHHHHCHHHHHHHHHHT-------CCCBCCEEEESS-HHHHHHHHH--HHCSSEEEECTTSCS---STT
T ss_pred CCCEECccHHHHHHHcCHHHHHHHHHHc-------CCCCCCeeeeCC-HHHHHHHHH--HcCCCEEEEECCCCC---CCC
Confidence 45566 7788999999999998888764 366888887752 222222222 367999999987655 466
Q ss_pred eEEEeccCCCCC---------CCCCeeEEEeeecceeEEEEEEEcc
Q 022979 178 LFLAYDRFSLSE---------LEPPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 178 Maivf~~~gL~~---------L~~P~VlQeFINH~gvLfKVYVvGd 214 (289)
+.++.+++.|.. ...++++||||. |.=|-|.+++|
T Consensus 152 v~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~--g~E~sv~~~~~ 195 (417)
T 2ip4_A 152 VTVAFDLHQAKQAVANILNRAEGGEVVVEEYLE--GEEATVLALTD 195 (417)
T ss_dssp CEEESCHHHHHHHHHHHTTSSSCCCEEEEECCC--SCEEEEEEEES
T ss_pred EEEeCCHHHHHHHHHHHHhhccCCeEEEEECcc--CcEEEEEEEEe
Confidence 788888876541 236899999998 56788887743
No 42
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=97.22 E-value=0.00032 Score=66.34 Aligned_cols=100 Identities=11% Similarity=0.084 Sum_probs=71.3
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCcee
Q 022979 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHE 177 (289)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~ 177 (289)
.+.++ -++++++...|+..+.+.+++. .|.+|++..+++ .+++.+.+. .+.||+|+||....| +..
T Consensus 86 gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~~~--~~~~P~vvKp~~~~~---g~G 152 (422)
T 2xcl_A 86 GLHVFGPSKAAAIIEGSKQFAKDLMKKY-------DIPTAEYETFTS-FDEAKAYVQ--EKGAPIVIKADGLAA---GKG 152 (422)
T ss_dssp TCCEESCCTTTTHHHHCHHHHHHHHHHT-------TCCBCCEEEESC-HHHHHHHHH--HHCSSEEEEESSCGG---GTC
T ss_pred CCCEECcCHHHHHHhcCHHHHHHHHHHc-------CCCCCCeEEECC-HHHHHHHHH--hcCCCEEEEeCCCCC---CCc
Confidence 55566 6778899999999998888764 366888888752 222222222 367999999987654 567
Q ss_pred eEEEeccCCCCC----------C---CCCeeEEEeeecceeEEEEEEEc
Q 022979 178 LFLAYDRFSLSE----------L---EPPMLLQEFVNHGGILFKIYIIG 213 (289)
Q Consensus 178 Maivf~~~gL~~----------L---~~P~VlQeFINH~gvLfKVYVvG 213 (289)
+.++.+++.|.. . ..++++||||. |.=|-|.++.
T Consensus 153 v~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--g~E~sv~~~~ 199 (422)
T 2xcl_A 153 VTVAMTEEEAIACLHDFLEDEKFGDASASVVIEEYLS--GEEFSLMAFV 199 (422)
T ss_dssp EEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC--SEEEEEEEEE
T ss_pred EEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCc--CcEEEEEEEE
Confidence 888888776542 1 36899999999 5677777773
No 43
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=97.19 E-value=0.00041 Score=65.64 Aligned_cols=100 Identities=14% Similarity=0.100 Sum_probs=70.6
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCcee
Q 022979 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHE 177 (289)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~ 177 (289)
.+.++ -++++++...|+..+.+.+++. .|.+|++..+++ .+++.+.+. .+.||+|+||....| +..
T Consensus 86 gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~~~--~~~~PvvvKp~~g~g---g~G 152 (424)
T 2yw2_A 86 GLKIFGPNKEAAKLEGSKAFAKTFMKKY-------GIPTARYEVFTD-FEKAKEYVE--KVGAPIVVKADGLAA---GKG 152 (424)
T ss_dssp TCCEESCCTTTTHHHHCHHHHHHHHHHT-------TCCBCCEEEESC-HHHHHHHHH--HHCSSEEEEESSCCT---TCS
T ss_pred CCcEECcCHHHHHHHhCHHHHHHHHHHc-------CCCCCCeEEECC-HHHHHHHHH--HcCCcEEEEeCCCCC---CCC
Confidence 56666 6788899999999998888764 366888888742 222222222 367999999988655 567
Q ss_pred eEEEeccCCCCC----C---------CCCeeEEEeeecceeEEEEEEEc
Q 022979 178 LFLAYDRFSLSE----L---------EPPMLLQEFVNHGGILFKIYIIG 213 (289)
Q Consensus 178 Maivf~~~gL~~----L---------~~P~VlQeFINH~gvLfKVYVvG 213 (289)
+.++.+++.|.. + ..++++||||. |.=|=|.+++
T Consensus 153 v~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--g~E~sv~~~~ 199 (424)
T 2yw2_A 153 AVVCETVEKAIETLDRFLNKKIFGKSSERVVIEEFLE--GEEASYIVMI 199 (424)
T ss_dssp EEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC--SEEEEEEEEE
T ss_pred EEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC--CcEEEEEEEE
Confidence 889998876541 1 25899999999 4566666663
No 44
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=97.18 E-value=0.0017 Score=69.45 Aligned_cols=102 Identities=23% Similarity=0.445 Sum_probs=63.3
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCcee
Q 022979 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHE 177 (289)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~ 177 (289)
.+.++ -++++++...||..+.+.++++. |.+|++..+.+ .++..+.. ..+.||+|+||....| +..
T Consensus 658 Gi~i~G~~~~ai~~~~DK~~~~~ll~~~G-------Ip~P~~~~~~s-~eea~~~~--~~ig~PvvVKP~~~~g---G~G 724 (1073)
T 1a9x_A 658 GVPVIGTSPDAIDRAEDRERFQHAVERLK-------LKQPANATVTA-IEMAVEKA--KEIGYPLVVRASYVLG---GRA 724 (1073)
T ss_dssp TCCBCSSCHHHHHHHHSHHHHHHHHHHHT-------CCCCCEEECCS-HHHHHHHH--HHHCSSEEEEC----------C
T ss_pred CCCeeCCCHHHHHHhhCHHHHHHHHHHcC-------cCCCCceEECC-HHHHHHHH--HHcCCCEEEEECCCCC---CCC
Confidence 45555 56889999999999988887653 56788887742 11121222 2467999999998766 468
Q ss_pred eEEEeccCCCCC-----C----CCCeeEEEeeecceeEEEEEEEcc
Q 022979 178 LFLAYDRFSLSE-----L----EPPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 178 Maivf~~~gL~~-----L----~~P~VlQeFINH~gvLfKVYVvGd 214 (289)
|.+|.+++.|.. + ..|+++|+||+.. .=|=|-+++|
T Consensus 725 v~iv~~~~el~~~~~~a~~~~~~~~vlvEefI~g~-~E~~V~~l~d 769 (1073)
T 1a9x_A 725 MEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDA-VEVDVDAICD 769 (1073)
T ss_dssp EEEECSHHHHHHHHHHCC--------EEEBCCTTC-EEEEEEEEEC
T ss_pred eEEECCHHHHHHHHHHHHhhCCCCcEEEEEccCCC-cEEEEEEEEE
Confidence 999999987642 1 3589999999854 3445555544
No 45
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=97.18 E-value=0.00063 Score=64.62 Aligned_cols=99 Identities=11% Similarity=0.108 Sum_probs=71.1
Q ss_pred EEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEE
Q 022979 101 TILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL 180 (289)
Q Consensus 101 ~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Mai 180 (289)
++--++++++...||..+.+.+++. .|.+|++..+++ .+++.+. ...+.||+|+||....| +..|.+
T Consensus 93 ~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~e~~~~--~~~~g~PvvvKp~~~~g---g~Gv~~ 159 (412)
T 1vkz_A 93 VFGPVKEVARLEGSKVYAKRFMKKY-------GIRTARFEVAET-PEELREK--IKKFSPPYVIKADGLAR---GKGVLI 159 (412)
T ss_dssp BSSCCHHHHHHHHCHHHHHHHHHHT-------TCCCCCEEEESS-HHHHHHH--HTTSCSSEEEEESSCCS---SCCEEE
T ss_pred hhCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCEEEECC-HHHHHHH--HHhcCCCEEEEeCCCCC---CCCEEE
Confidence 4456788999999999999988764 366788887752 1111111 13578999999988665 467889
Q ss_pred EeccCCCCC-----------CC--CCeeEEEeeecceeEEEEEEEcc
Q 022979 181 AYDRFSLSE-----------LE--PPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 181 vf~~~gL~~-----------L~--~P~VlQeFINH~gvLfKVYVvGd 214 (289)
+.+++.|.. .. .++++||||. |.=|=|.+++|
T Consensus 160 v~~~~el~~a~~~~~~~~~~~g~~~~vlvEe~i~--G~E~sv~~~~d 204 (412)
T 1vkz_A 160 LDSKEETIEKGSKLIIGELIKGVKGPVVIDEFLA--GNELSAMAVVN 204 (412)
T ss_dssp ESSHHHHHHHHHHHHHTSSSTTCCSCEEEEECCC--SEEEEEEEEEE
T ss_pred ECCHHHHHHHHHHHHhhccccCCCCeEEEEECCc--CcEEEEEEEEC
Confidence 998876532 11 3899999999 57778888743
No 46
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=97.17 E-value=0.00073 Score=64.05 Aligned_cols=129 Identities=7% Similarity=0.071 Sum_probs=88.6
Q ss_pred CceEEEecccchHH-HHHHHHHHHhCCCeEEeC-ChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCC-C-
Q 022979 73 PFDVVLHKLSGMEW-CKIIEDYRQKHPEVTILD-PPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSL-S- 148 (289)
Q Consensus 73 p~DvILHKltd~~~-~~~l~~y~~~hP~v~ViD-P~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~-~- 148 (289)
.+|+|+-=+.+..= .-.+|.+.+.. ++.++= ++.++...+|+..+.+.+++. .|.+|++..++.... .
T Consensus 98 ~~D~vf~~lhG~~gEdg~iq~lle~~-gipy~G~~~~a~~~~~DK~~~k~~l~~~-------GIp~p~~~~~~~~~~~~~ 169 (372)
T 3tqt_A 98 SADCVFPMVHGTQGEDGALQGLLELL-NLPYVGANVQSSAVCMEKDLTKTVLRAG-------GIPVVDWHTLSPRDATEG 169 (372)
T ss_dssp CCSEEEECCCSTTTTSSHHHHHHHHT-TCCBSSCCHHHHHHHHSHHHHHHHHHHT-------TCCBCCCEEECTTSCCTT
T ss_pred CCCEEEEcCCCCCCcCHHHHHHHHHc-CCCeeCcCHHHHHHHhCHHHHHHHHHHC-------CcCCCCEEEEechhhhhh
Confidence 58988766644210 01255555554 676664 477889999999999998754 477899998854322 1
Q ss_pred chhHHHhcCCccc-eEeeeccccCCCCceeeEEEeccCCCC-------CCCCCeeEEEeeecceeEEEEEEEcce
Q 022979 149 IPDQVFEAGLKLP-LVAKPLVVDGSAKSHELFLAYDRFSLS-------ELEPPMLLQEFVNHGGILFKIYIIGET 215 (289)
Q Consensus 149 ~~~~l~~agl~fP-~I~Kp~vA~Gs~~SH~Maivf~~~gL~-------~L~~P~VlQeFINH~gvLfKVYVvGd~ 215 (289)
.... ....+.|| +|+||....| |..+.+|.+++.|. ....++++||||. |.=|=|.|+||.
T Consensus 170 ~~~~-~~~~lg~P~vvVKP~~ggs---s~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~ 238 (372)
T 3tqt_A 170 VYQR-LLDRWGTSELFVKAVSLGS---SVATLPVKTETEFTKAVKEVFRYDDRLMVEPRIR--GREIECAVLGNG 238 (372)
T ss_dssp HHHH-HHHHC---CEEEEESSCCS---GGGEEEECSHHHHHHHHHHHTTTCSCEEEEECCC--SEEEEEEEEESS
T ss_pred HHHH-HHHhcCCCeEEEEECCCCC---CCCEEEECCHHHHHHHHHHHHhcCCCEEEECCCC--CEEEEEEEEeCC
Confidence 1112 22468899 9999987655 57789999998774 2367899999998 688999999986
No 47
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=97.14 E-value=0.00059 Score=65.50 Aligned_cols=100 Identities=10% Similarity=0.054 Sum_probs=67.0
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCcee
Q 022979 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHE 177 (289)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~ 177 (289)
.+.++ -++++++...|+..+.+.+++. .|.+|++..+++ .+++.+.+. .+.||+|+||....| +..
T Consensus 107 gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~~~--~~~~PvVvKp~~~~g---g~G 173 (451)
T 2yrx_A 107 GLRIFGPSQRAALIEGSKAFAKELMKKY-------GIPTADHAAFTS-YEEAKAYIE--QKGAPIVIKADGLAA---GKG 173 (451)
T ss_dssp TCCEESCCHHHHHHHHCHHHHHHHHHHT-------TCCBCCEEEESC-HHHHHHHHH--HHCSSEEEEECC-------CC
T ss_pred CCCEeCccHHHHHHhhCHHHHHHHHHHc-------CCCCCCeEEECC-HHHHHHHHH--hcCCcEEEEeCCCCC---CCc
Confidence 45566 5677888888888888888754 366899888852 222222222 367999999998765 467
Q ss_pred eEEEeccCCCCC----C---------CCCeeEEEeeecceeEEEEEEEc
Q 022979 178 LFLAYDRFSLSE----L---------EPPMLLQEFVNHGGILFKIYIIG 213 (289)
Q Consensus 178 Maivf~~~gL~~----L---------~~P~VlQeFINH~gvLfKVYVvG 213 (289)
+.++.+++.|.. + ..++++||||. |.=|=|.++.
T Consensus 174 v~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--G~E~sv~~~~ 220 (451)
T 2yrx_A 174 VTVAQTVEEALAAAKAALVDGQFGTAGSQVVIEEYLE--GEEFSFMAFV 220 (451)
T ss_dssp EEEESSHHHHHHHHHHHHHHSCCBTTBCCEEEEECCC--SEEEEEEEEE
T ss_pred EEEECCHHHHHHHHHHHHhccccCCCCCeEEEEECCc--CcEEEEEEEE
Confidence 788888776531 1 36899999999 5567776663
No 48
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=97.08 E-value=0.00076 Score=64.62 Aligned_cols=100 Identities=11% Similarity=0.132 Sum_probs=68.0
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccc-eEeeeccccCCCCce
Q 022979 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLP-LVAKPLVVDGSAKSH 176 (289)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP-~I~Kp~vA~Gs~~SH 176 (289)
.+.++ -++++++...|+..+.+.+++. .|.+|++..+++ .+++.+.+ ..+.|| +|+||....| +.
T Consensus 112 gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~~--~~~g~P~vvvKp~~~~g---g~ 178 (452)
T 2qk4_A 112 GVQCFGPTAEAAQLESSKRFAKEFMDRH-------GIPTAQWKAFTK-PEEACSFI--LSADFPALVVKASGLAA---GK 178 (452)
T ss_dssp TCCEESCCTTTTHHHHBHHHHHHHHHHT-------TCCBCCEEEESS-HHHHHHHH--HHCSSCEEEEEESBC------C
T ss_pred CCcEeCcCHHHHHHhcCHHHHHHHHHHC-------CCCCCCeEEECC-HHHHHHHH--HhCCCCeEEEEeCCCCC---CC
Confidence 45555 6677888888888888887754 366888888752 21222222 247899 9999987655 46
Q ss_pred eeEEEeccCCCCC----------C---CCCeeEEEeeecceeEEEEEEEc
Q 022979 177 ELFLAYDRFSLSE----------L---EPPMLLQEFVNHGGILFKIYIIG 213 (289)
Q Consensus 177 ~Maivf~~~gL~~----------L---~~P~VlQeFINH~gvLfKVYVvG 213 (289)
.+.++.+++.|.. . ..++++||||. |.=|-|.+++
T Consensus 179 Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--G~E~sv~~~~ 226 (452)
T 2qk4_A 179 GVIVAKSKEEACKAVQEIMQEKAFGAAGETIVIEELLD--GEEVSCLCFT 226 (452)
T ss_dssp CEEECSSHHHHHHHHHHHTTC-------CCEEEEECCC--SEEEEEEEEE
T ss_pred CEEEeCCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC--CCeEEEEEEE
Confidence 7888988876532 1 36899999999 5678888774
No 49
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=97.06 E-value=0.00037 Score=65.27 Aligned_cols=156 Identities=15% Similarity=0.154 Sum_probs=90.5
Q ss_pred HHHHHHHhcCcEEEEccCCCCC---------------C---------CCCCceEEEecccchHHHHHHHHHHHhCCCeEE
Q 022979 47 KLEILARNKGISFVAIDQNRPL---------------S---------DQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTI 102 (289)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~pl---------------~---------~Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~V 102 (289)
.+...|++.|+..+-+|...+- . .+..+|.|+--..+... ..+.+..++. .+ +
T Consensus 21 ~~~~a~~~~G~~~v~v~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~~d~v~~~~~~~~~-~~~a~~~~~~-gl-~ 97 (403)
T 4dim_A 21 GLYKAAKELGIHTIAGTMPNAHKPCLNLADEISYMDISNPDEVEQKVKDLNLDGAATCCLDTGI-VSLARICDKE-NL-V 97 (403)
T ss_dssp HHHHHHHHHTCEEEEEECSSCCHHHHHHCSEEEECCTTCHHHHHHHTTTSCCSEEECCSCSTTH-HHHHHHHHHH-TC-S
T ss_pred HHHHHHHHCCCEEEEEcCCCCCCcchhhCCeEEEecCCCHHHHHHHHHHcCCCEEEeCCcchhH-HHHHHHHHHc-Cc-C
Confidence 4667788888888888753211 0 01345666532222211 1222222222 12 2
Q ss_pred eCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEe
Q 022979 103 LDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAY 182 (289)
Q Consensus 103 iDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf 182 (289)
--++++++.+.|+..+.+.+++. .|.+|++..++ +.+++.+. ...+.||+|+||....| +..|.++.
T Consensus 98 g~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~-~~~~~~~~--~~~~g~P~vvKp~~g~g---g~Gv~~v~ 164 (403)
T 4dim_A 98 GLNEEAAIMCGDKYKMKEAFKKY-------NVNTARHFVVR-NENELKNA--LENLKLPVIVKATDLQG---SKGIYIAK 164 (403)
T ss_dssp SCCHHHHHHHHCHHHHHHHHHHH-------TCCCCCEECCC-SHHHHHHH--HHTSCSSEEEECSCC--------CEEES
T ss_pred CCCHHHHHHHhCHHHHHHHHHHc-------CCCCCCEEEeC-CHHHHHHH--HhcCCCCEEEEECCCCC---CCCEEEEC
Confidence 45788999999999999988765 35678887664 21112122 23688999999998765 57789999
Q ss_pred ccCCCCCC---------CCCeeEEEeeecceeEEEEEEEcceEEE
Q 022979 183 DRFSLSEL---------EPPMLLQEFVNHGGILFKIYIIGETIKV 218 (289)
Q Consensus 183 ~~~gL~~L---------~~P~VlQeFINH~gvLfKVYVvGd~v~v 218 (289)
+++.|... ..++++||||.....=.=+++.+..+.+
T Consensus 165 ~~~el~~~~~~~~~~~~~~~~lvEe~i~g~e~sv~~~~~~g~~~~ 209 (403)
T 4dim_A 165 KEEEAIDGFNETMNLTKRDYCIVEEFIEGYEFGAQAFVYKNDVLF 209 (403)
T ss_dssp SHHHHHHHHHHHHHHCSSSCCEEEECCCSEEEEEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHhcCcCCcEEEEEccCCcEEEEEEEEECCEEEE
Confidence 98877521 3689999999843222223333444443
No 50
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=97.01 E-value=0.0033 Score=61.44 Aligned_cols=124 Identities=14% Similarity=0.157 Sum_probs=82.7
Q ss_pred hHHHHHHHhcCcEEEEccCCCCCCCCCCceEEEecccchHHHHHHHHHHHhCCCeEEeCChhHHhhhccHHHHHHHHhhc
Q 022979 46 PKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADL 125 (289)
Q Consensus 46 ~~l~~~~~~~gi~~v~iD~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~ViDP~~~i~~l~dR~~~l~~l~~l 125 (289)
..+.++|++.|++.|-. +++.. ...+.+..++. .+. --++++++...|+..+.+.+++.
T Consensus 92 ~~I~~~a~~~~id~Vip------------------~sE~~-l~~~a~~~e~~-Gi~-g~~~~ai~~~~DK~~~k~~l~~~ 150 (474)
T 3vmm_A 92 EQIVKVAEMFGADAITT------------------NNELF-IAPMAKACERL-GLR-GAGVQAAENARDKNKMRDAFNKA 150 (474)
T ss_dssp HHHHHHHHHTTCSEEEE------------------SCGGG-HHHHHHHHHHT-TCC-CSCHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCEEEE------------------CCccc-HHHHHHHHHHc-CCC-CCCHHHHHHhhCHHHHHHHHHHc
Confidence 36788888888765432 23331 11233333332 333 77899999999999999998864
Q ss_pred ccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEeccCCCCC----------------
Q 022979 126 NLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE---------------- 189 (289)
Q Consensus 126 ~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~---------------- 189 (289)
.|.+|++..+++. ++..+. ...+.||+|+||....|+ ..|.++.+++.|..
T Consensus 151 -------GIpvp~~~~v~s~-ee~~~~--~~~lg~PvVVKP~~g~gg---~Gv~iv~~~eel~~a~~~~~~~~~~~~~~~ 217 (474)
T 3vmm_A 151 -------GVKSIKNKRVTTL-EDFRAA--LEEIGTPLILKPTYLASS---IGVTLITDTETAEDEFNRVNDYLKSINVPK 217 (474)
T ss_dssp -------TSCCCCEEEECSH-HHHHHH--HHHSCSSEEEEESSCCTT---TTCEEECCTTSHHHHHHHHHHHHTTSCCCT
T ss_pred -------CCCCCCeEEECCH-HHHHHH--HHHcCCCEEEEECCCCcC---ceEEEECCHHHHHHHHHHHHHHHhhccccc
Confidence 3668888877521 112121 235789999999987664 56789999987641
Q ss_pred ---CCCCeeEEEeeecc
Q 022979 190 ---LEPPMLLQEFVNHG 203 (289)
Q Consensus 190 ---L~~P~VlQeFINH~ 203 (289)
...++++||||...
T Consensus 218 a~~~~~~vlVEe~I~G~ 234 (474)
T 3vmm_A 218 AVTFEAPFIAEEFLQGE 234 (474)
T ss_dssp TCCCSCSEEEEECCCBC
T ss_pred cccCCCeEEEEeCCCCc
Confidence 24689999999854
No 51
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=97.00 E-value=0.0044 Score=55.87 Aligned_cols=130 Identities=20% Similarity=0.257 Sum_probs=80.8
Q ss_pred HHHHHHHhcCcEEEEccCCCCC--------CCC---CC-c---------eEEEecccchHHH-HHHHHHHHhCCCeEEeC
Q 022979 47 KLEILARNKGISFVAIDQNRPL--------SDQ---GP-F---------DVVLHKLSGMEWC-KIIEDYRQKHPEVTILD 104 (289)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~pl--------~~Q---gp-~---------DvILHKltd~~~~-~~l~~y~~~hP~v~ViD 104 (289)
.+...+++.|+..+.+|.+... .+. .+ + |+|+ ..++... ..++.. + .-.+.++-
T Consensus 15 ~l~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~d~i~--~~~e~~~~~~~~~l-e-~~g~~~~~ 90 (334)
T 2r85_A 15 QILKGAKDEGFETIAFGSSKVKPLYTKYFPVADYFIEEKYPEEELLNLNAVVV--PTGSFVAHLGIELV-E-NMKVPYFG 90 (334)
T ss_dssp HHHHHHHHTTCCEEEESCGGGHHHHHTTSCCCSEEECSSCCHHHHHHTTEEEC--CCTTHHHHHCHHHH-H-TCCSCBBS
T ss_pred HHHHHHHhCCCEEEEEECCCCCcccccccccCceEecCCcChHHhcccCCEEE--ECcchhhhhHHHHH-H-HcCCCccC
Confidence 5777788899999999887421 111 12 2 5554 1122111 112222 2 23566677
Q ss_pred ChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEecc
Q 022979 105 PPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDR 184 (289)
Q Consensus 105 P~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~ 184 (289)
++++++...|+..+.+.+++. .|.+|++ +. +. ..+.||+|+||....|+ ..+.++.++
T Consensus 91 ~~~~~~~~~dK~~~~~~l~~~-------gip~p~~--~~-~~---------~~l~~P~vvKP~~g~~s---~Gv~~v~~~ 148 (334)
T 2r85_A 91 NKRVLRWESDRNLERKWLKKA-------GIRVPEV--YE-DP---------DDIEKPVIVKPHGAKGG---KGYFLAKDP 148 (334)
T ss_dssp CTTHHHHHHSHHHHHHHHHHT-------TCCCCCB--CS-CG---------GGCCSCEEEEECC-------TTCEEESSH
T ss_pred CHHHHHHHHhHHHHHHHHHHc-------CCCCCCc--cC-Ch---------HHcCCCEEEEeCCCCCC---CCEEEECCH
Confidence 789999999999998888754 2557777 32 21 12569999999997765 456788888
Q ss_pred CCCCCC----------C--CCeeEEEeeec
Q 022979 185 FSLSEL----------E--PPMLLQEFVNH 202 (289)
Q Consensus 185 ~gL~~L----------~--~P~VlQeFINH 202 (289)
+.|... . .++++||||+-
T Consensus 149 ~el~~~~~~~~~~~~~~~~~~~lvee~i~G 178 (334)
T 2r85_A 149 EDFWRKAEKFLGIKRKEDLKNIQIQEYVLG 178 (334)
T ss_dssp HHHHHHHHHHHCCCSGGGCCSEEEEECCCC
T ss_pred HHHHHHHHHHHhhcccCCCCcEEEEeccCC
Confidence 766421 2 68999999983
No 52
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=96.95 E-value=0.00067 Score=64.88 Aligned_cols=102 Identities=11% Similarity=0.239 Sum_probs=71.1
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceE--EEcCCCCCchhHHHhcCCccceEeeeccccCCCCc
Q 022979 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 175 (289)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~S 175 (289)
.+.++ -++++++.+.|+..+.+.+++. .|.+|++. .++ +.+++.+.. ..+.||+|+||....| +
T Consensus 103 g~~~~g~~~~~~~~~~dK~~~~~~l~~~-------Gip~p~~~~~~~~-~~~e~~~~~--~~~g~PvvvKp~~g~g---g 169 (446)
T 3ouz_A 103 NIKFIGPSVEAMNLMSDKSKAKQVMQRA-------GVPVIPGSDGALA-GAEAAKKLA--KEIGYPVILKAAAGGG---G 169 (446)
T ss_dssp TCEESSCCHHHHHHHHSHHHHHHHHHHT-------TCCBCSBCSSSCC-SHHHHHHHH--HHHCSSEEEEETTCCT---T
T ss_pred CCceECcCHHHHHHhCCHHHHHHHHHHc-------CCCcCCCcccCCC-CHHHHHHHH--HHhCCCEEEEECCCCC---C
Confidence 56666 6789999999999999988764 35567764 332 222222222 2467999999997655 5
Q ss_pred eeeEEEeccCCCCCC-------------CCCeeEEEeeecceeEEEEEEEcc
Q 022979 176 HELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 176 H~Maivf~~~gL~~L-------------~~P~VlQeFINH~gvLfKVYVvGd 214 (289)
..|.++.+++.|... ..++++||||... .-|=|.|++|
T Consensus 170 ~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~-~e~~v~v~~d 220 (446)
T 3ouz_A 170 RGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNP-RHIEVQVIGD 220 (446)
T ss_dssp CSEEEECSGGGHHHHHHHHHHHHHHHHSCCCEEEEECCSSC-EEEEEEEEEC
T ss_pred CCEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCC-cEEEEEEEEc
Confidence 678999999987531 5689999999863 3455566654
No 53
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=96.67 E-value=0.0039 Score=59.72 Aligned_cols=102 Identities=7% Similarity=0.179 Sum_probs=68.9
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceE--EEcCCCCCchhHHHhcCCccceEeeeccccCCCCc
Q 022979 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 175 (289)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~S 175 (289)
.+.++ -++++++...|+..+.+.+++. .|.+|++. .++ +.+++.+.+ ..+.||+|+||....|+
T Consensus 104 gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~-~~~~~~~~~--~~~g~PvvvKp~~g~gg--- 170 (461)
T 2dzd_A 104 GIIFIGPNENHLDMFGDKVKARHAAVNA-------GIPVIPGSDGPVD-GLEDVVAFA--EAHGYPIIIKAALGGGG--- 170 (461)
T ss_dssp TCEESSCCHHHHHHTTSHHHHHHHHHHT-------TCCBCCBCSSCCS-SHHHHHHHH--HHHCSCEEEEESTTCSS---
T ss_pred CCEEECCCHHHHHHhhCHHHHHHHHHHc-------CCCCCCCcccCcC-CHHHHHHHH--HhcCCcEEEEeCCCCCC---
Confidence 45544 5588899999999988888754 35567765 342 221222222 24679999999987664
Q ss_pred eeeEEEeccCCCCCC-------------CCCeeEEEeeecceeEEEEEEEcc
Q 022979 176 HELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 176 H~Maivf~~~gL~~L-------------~~P~VlQeFINH~gvLfKVYVvGd 214 (289)
..+.++.+++.|... ..++++||||.. +.=|-|.+++|
T Consensus 171 ~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g-~~e~~v~v~~~ 221 (461)
T 2dzd_A 171 RGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIEN-PKHIEVQILGD 221 (461)
T ss_dssp SSEEEECCGGGHHHHHHHHHHHHHHHTSCCCEEEEECCCS-CEEEEEEEEEC
T ss_pred CCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEECCCC-CeEEEEEEEEc
Confidence 568899998877421 468999999985 34466666654
No 54
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=96.55 E-value=0.011 Score=59.51 Aligned_cols=142 Identities=15% Similarity=0.156 Sum_probs=88.5
Q ss_pred chHHHHHHHhcCcEEEEccCCCCCCCCCCceEEEecccchHHHHHHHHHHHhCCCeEEe-CChhHHhhhccHHHHHHHHh
Q 022979 45 QPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVA 123 (289)
Q Consensus 45 ~~~l~~~~~~~gi~~v~iD~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~Vi-DP~~~i~~l~dR~~~l~~l~ 123 (289)
...+++.|++.|++.|-.-... +++.. .+.+..++. .+.++ -++++++.+.|+..+.+.++
T Consensus 128 ~~~Il~~a~~~~vdaV~pG~Gf-lsEn~----------------~~a~~le~~-Gi~~iGp~~~ai~~~~DK~~ak~ll~ 189 (587)
T 3jrx_A 128 VELIVDIAKRIPVQAVWAGWGH-ASENP----------------KLPELLCKN-GVAFLGPPSEAMWALGDKIASTVVAQ 189 (587)
T ss_dssp HHHHHHHHHHTTCSEEECCSST-TTTCT----------------HHHHHHHTT-TCEESSCCHHHHHHHCSHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEeCCCc-cccCH----------------HHHHHHHHC-CCCeeCCCHHHHHHhCCHHHHHHHHH
Confidence 3458888888888765221111 11111 123333443 67887 78899999999999999888
Q ss_pred hcccCCCCCceecCceEE----Ec---------------------CCCCCchhHHH-hcCCccceEeeeccccCCCCcee
Q 022979 124 DLNLSDCNGKVRVPRQMV----IT---------------------KDSLSIPDQVF-EAGLKLPLVAKPLVVDGSAKSHE 177 (289)
Q Consensus 124 ~l~~~~~~~~i~~P~~v~----i~---------------------~~~~~~~~~l~-~agl~fP~I~Kp~vA~Gs~~SH~ 177 (289)
+.. |.+|++.. ++ ....+..+..+ ...+.||+|+||....| +..
T Consensus 190 ~aG-------VPvpp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~eea~~~a~~iGyPvVVKp~~GgG---GkG 259 (587)
T 3jrx_A 190 TLQ-------VPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGGG---GKG 259 (587)
T ss_dssp HTT-------CCBCCBTTTTCCCCC------CCCCCCCCHHHHHTTSCCSHHHHHHHHHHHCSSEEEEETTCCS---SSS
T ss_pred HcC-------CCCCCeecccccccccccccccccccccchhhccccccCCHHHHHHHHHhcCCeEEEEeCCCCC---CCC
Confidence 653 33444322 00 00111111111 23578999999998776 467
Q ss_pred eEEEeccCCCCCC---------CCCeeEEEeeecceeEEEEEEEcce
Q 022979 178 LFLAYDRFSLSEL---------EPPMLLQEFVNHGGILFKIYIIGET 215 (289)
Q Consensus 178 Maivf~~~gL~~L---------~~P~VlQeFINH~gvLfKVYVvGd~ 215 (289)
|.+|.+++.|... ..++++|+||.. +.=|=|-|+||.
T Consensus 260 v~iV~s~eEL~~a~~~a~~~~~~~~vlVEeyI~g-~rei~V~vl~D~ 305 (587)
T 3jrx_A 260 IRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQH-ARHLEVQILADQ 305 (587)
T ss_dssp EEEECSTTTHHHHHHHHHHHSTTCCEEEEECCCS-CEEEEEEEEECS
T ss_pred eEEeCCHHHHHHHHHHHHhhccCCCEEEEEecCC-CcEEEEEEEEcC
Confidence 9999999987531 468999999975 356667777663
No 55
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=96.52 E-value=0.0037 Score=66.89 Aligned_cols=154 Identities=17% Similarity=0.245 Sum_probs=97.4
Q ss_pred HHHHHHHhcCcEEEEccCCCCCC-------C-----------------CCCceEEEecccchH---HHHHHHH--HHHhC
Q 022979 47 KLEILARNKGISFVAIDQNRPLS-------D-----------------QGPFDVVLHKLSGME---WCKIIED--YRQKH 97 (289)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~pl~-------~-----------------Qgp~DvILHKltd~~---~~~~l~~--y~~~h 97 (289)
.+...+++.|+..+.+|.+.... + ...+|+|+-=+-... ....+.+ ..+++
T Consensus 32 ~~~~al~~~G~~vv~v~~~~~~~~~~~~~ad~~~i~p~~~e~i~~i~~~~~~D~V~p~~g~~~~l~~~~~l~~~~~le~~ 111 (1073)
T 1a9x_A 32 QACKALREEGYRVINVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEF 111 (1073)
T ss_dssp HHHHHHHHHTCEEEEECSCTTCGGGCGGGSSEEECSCCCHHHHHHHHHHHCCSEEECSSSHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHcCCEEEEEeCCcccccCChhhCcEEEECCCCHHHHHHHHHHhCCCEEEeccCCchHHHHHHHHHHhhHHHHc
Confidence 36667888999999999764321 0 013444443221111 1111111 22332
Q ss_pred CCeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCce
Q 022979 98 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH 176 (289)
Q Consensus 98 P~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH 176 (289)
++.++ -++++++...||..+.+.+++. .+.+|++..+++. ++..+.. ..+.||+|+||....|+ .
T Consensus 112 -gv~~~G~~~~ai~~~~DK~~~k~~l~~~-------Gipvp~~~~v~~~-~ea~~~~--~~ig~PvVvKp~~~~Gg---~ 177 (1073)
T 1a9x_A 112 -GVTMIGATADAIDKAEDRRRFDVAMKKI-------GLETARSGIAHTM-EEALAVA--ADVGFPCIIRPSFTMGG---S 177 (1073)
T ss_dssp -TCEECSSCHHHHHHHHSHHHHHHHHHHT-------TCCCCSEEEESSH-HHHHHHH--HHHCSSEEEEETTCCTT---T
T ss_pred -CCeeeCCCHHHHHHhhCHHHHHHHHHHC-------CcCCCCEEEECCH-HHHHHHH--HHcCCCEEEEECCCCCC---C
Confidence 46666 7789999999999999988764 3667888887521 1121222 24679999999998775 4
Q ss_pred eeEEEeccCCCCCC---------CCCeeEEEeeecceeEEEEEEEcce
Q 022979 177 ELFLAYDRFSLSEL---------EPPMLLQEFVNHGGILFKIYIIGET 215 (289)
Q Consensus 177 ~Maivf~~~gL~~L---------~~P~VlQeFINH~gvLfKVYVvGd~ 215 (289)
.+.++.+++.|... ..++++||||.. ..=|=|-|++|.
T Consensus 178 Gv~iv~~~eel~~~~~~~~~~~~~~~vlvEe~I~G-~~E~~v~v~~d~ 224 (1073)
T 1a9x_A 178 GGGIAYNREEFEEICARGLDLSPTKELLIDESLIG-WKEYEMEVVRDK 224 (1073)
T ss_dssp TCEEESSHHHHHHHHHHHHHHCTTSCEEEEECCTT-SEEEEEEEEECT
T ss_pred ceEEeCCHHHHHHHHHHHHhhCCCCcEEEEEccCC-CeEEEEEEEEeC
Confidence 67789998876532 247999999984 345667777763
No 56
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=96.41 E-value=0.0029 Score=60.36 Aligned_cols=101 Identities=9% Similarity=0.170 Sum_probs=68.0
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceE--EEcCCCCCc-hhHHHhcCCccceEeeeccccCCCC
Q 022979 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSI-PDQVFEAGLKLPLVAKPLVVDGSAK 174 (289)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~-~~~l~~agl~fP~I~Kp~vA~Gs~~ 174 (289)
.+.++ -++++++...|+..+.+.+++.. |.+|++. .++ +.+++ .+.+. .+.||+|+||....|+
T Consensus 99 gi~~~g~~~~~~~~~~dK~~~k~~l~~~g-------ip~p~~~~~~~~-~~~~~~~~~~~--~~g~PvvvKp~~g~gg-- 166 (449)
T 2w70_A 99 GFIFIGPKAETIRLMGDKVSAIAAMKKAG-------VPCVPGSDGPLG-DDMDKNRAIAK--RIGYPVIIKASGGGGG-- 166 (449)
T ss_dssp TCEESSSCHHHHHHHHSHHHHHHHHHHHT-------CCBCSBCSSCCC-SCHHHHHHHHH--HHCSSEEEEETTCCTT--
T ss_pred CCceECCCHHHHHHhcCHHHHHHHHHHcC-------CCcCCCcccccC-CHHHHHHHHHH--HhCCcEEEEECCCCCC--
Confidence 55554 45888999999999888887643 5567665 443 22222 22222 3679999999987664
Q ss_pred ceeeEEEeccCCCCCC-------------CCCeeEEEeeecceeEEEEEEEc
Q 022979 175 SHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIG 213 (289)
Q Consensus 175 SH~Maivf~~~gL~~L-------------~~P~VlQeFINH~gvLfKVYVvG 213 (289)
..+.++.+++.|... ..++++||||.. +.=|-|.+++
T Consensus 167 -~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g-~~e~~v~~~~ 216 (449)
T 2w70_A 167 -RGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLEN-PRHVEIQVLA 216 (449)
T ss_dssp -TTCEEECSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCSS-CEEEEEEEEE
T ss_pred -CCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEeccCC-CeEEEEEEEE
Confidence 567888888766421 468999999975 3446666664
No 57
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=96.33 E-value=0.0057 Score=60.57 Aligned_cols=104 Identities=13% Similarity=0.180 Sum_probs=67.5
Q ss_pred eEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEE-----cCC-----------------CCCchhHHH-h
Q 022979 100 VTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVI-----TKD-----------------SLSIPDQVF-E 155 (289)
Q Consensus 100 v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i-----~~~-----------------~~~~~~~l~-~ 155 (289)
+.++ -++++++.+.|+..+.+.+++.. |.+|++..+ ..+ ..+..+.+. .
T Consensus 158 i~~~gp~~~a~~~~~dK~~~k~~l~~~G-------Ip~p~~~~~~~~~~~~~~~~~l~~ip~~~~~~~~~~~~~e~~~~~ 230 (554)
T 1w96_A 158 VIFIGPPGNAMRSLGDKISSTIVAQSAK-------VPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKA 230 (554)
T ss_dssp CEESSCCHHHHHHSCSHHHHHHHHHHTT-------CCBCCBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHHHH
T ss_pred EEEeCCCHHHHHHHhCHHHHHHHHHHCC-------CCcCCccccccccccccccccccccccccccccCCCCHHHHHHHH
Confidence 5554 45679999999999999888653 334444321 000 011111111 1
Q ss_pred cCCccceEeeeccccCCCCceeeEEEeccCCCCCC---------CCCeeEEEeeecceeEEEEEEEcc
Q 022979 156 AGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL---------EPPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 156 agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~L---------~~P~VlQeFINH~gvLfKVYVvGd 214 (289)
..+.||+|+||....|+ ..|.++.+++.|... ..++++||||.. +.=|=|.+++|
T Consensus 231 ~~~g~PvVvKp~~g~gg---~Gv~~v~~~~el~~a~~~~~~~~~~~~vlvEe~i~g-~~e~sv~vl~d 294 (554)
T 1w96_A 231 KRIGFPVMIKASEGGGG---KGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAGR-ARHLEVQLLAD 294 (554)
T ss_dssp HHHCSSEEEEETTCCTT---TTEEEECSHHHHHHHHHHHHHHSTTCCEEEEECCCS-CEEEEEEEEEC
T ss_pred HHcCCCEEEEECCCCCC---ceEEEECCHHHHHHHHHHHHhhccCCCEEEEEecCC-CcEEEEEEEEc
Confidence 24679999999987764 578889998876521 468999999984 35566677765
No 58
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=96.19 E-value=0.0049 Score=57.64 Aligned_cols=131 Identities=11% Similarity=0.100 Sum_probs=74.5
Q ss_pred HHHHHHHhcCcEEEEccCCCCCC---CCCCceE--EEecc------cch-----HHHHH--HHHHHHhCCCeEEeCChhH
Q 022979 47 KLEILARNKGISFVAIDQNRPLS---DQGPFDV--VLHKL------SGM-----EWCKI--IEDYRQKHPEVTILDPPDA 108 (289)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~pl~---~Qgp~Dv--ILHKl------td~-----~~~~~--l~~y~~~hP~v~ViDP~~~ 108 (289)
.+...|++.|+.++-+|.+.+-. ...-.|- ++.+. .|. ++... ++.. + .-.+.+..+.++
T Consensus 15 ~~~~aAk~lG~~viv~d~~~~~p~~~a~~~ad~~~~~~~~~dl~~~~dvitpe~e~v~~~~l~~l-e-~~~~p~~p~~~~ 92 (320)
T 2pbz_A 15 QILLGAKKEGFKTRLYVSPKRRPFYSSLPIVDDLVVAEEMTSILNDDGIVVPHGSFVAYLGIEAI-E-KAKARFFGNRRF 92 (320)
T ss_dssp HHHHHHHHTTCCEEEEECTTTHHHHHTCTTCSEEEECSCSCCTTCCSSBCCCBTTHHHHSCHHHH-H-TCCSCCBSCSSG
T ss_pred HHHHHHHHCCCEEEEEECCCCCccchhhhcCCeEEECCcHHHHHhcCCEEEecccchhHHHHHHH-H-HcCCCcCCCHHH
Confidence 36667889999999999874321 1111121 11111 121 23321 2222 2 335678888999
Q ss_pred HhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEeccCCCC
Q 022979 109 IKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLS 188 (289)
Q Consensus 109 i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~ 188 (289)
++...||...-+.++++ .|.+|++.. .+++ .+.||+|+||..+.| ++...++.+ +.|.
T Consensus 93 l~~~~dr~~~~~~l~~~-------Gip~P~~~~----~ee~-------~i~~PviVKp~~g~g---gkG~~~v~~-eel~ 150 (320)
T 2pbz_A 93 LKWETTFELQDKALEGA-------GIPRVEVVE----PEDA-------KPDELYFVRIEGPRG---GSGHFIVEG-SELE 150 (320)
T ss_dssp GGGGSCHHHHHHHHHHH-------TCCBCCBCC----SCCC-------CSSCCEEEECC---------------C-EECS
T ss_pred HHHHHhHHHHHHHHHHC-------CcCCCCeeC----HhHc-------CcCCcEEEEECCCCC---CCCEEEECh-HHHH
Confidence 99999998766777765 356777762 2222 478999999998664 788999999 8886
Q ss_pred CC----CCCeeEEEeee
Q 022979 189 EL----EPPMLLQEFVN 201 (289)
Q Consensus 189 ~L----~~P~VlQeFIN 201 (289)
.. ..++++||||+
T Consensus 151 ~~~~~~~~~~IiEEfI~ 167 (320)
T 2pbz_A 151 ERLSTLEEPYRVERFIP 167 (320)
T ss_dssp CCCC----CCEEEECCC
T ss_pred HHHHhcCCCEEEEeeec
Confidence 43 25899999999
No 59
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=96.05 E-value=0.0025 Score=60.78 Aligned_cols=102 Identities=13% Similarity=0.200 Sum_probs=68.3
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceE--EEcCCCCCchhHHHhcCCccceEeeeccccCCCCc
Q 022979 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 175 (289)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~S 175 (289)
.+.++ -++++++...|+..+.+.+++.. |.+|++. .++ +.+++.+.+. .+.||+|+||....|+
T Consensus 98 gi~~~g~~~~~~~~~~dK~~~k~~l~~~g-------ip~p~~~~~~~~-~~~~~~~~~~--~~g~PvvvKp~~g~gg--- 164 (451)
T 1ulz_A 98 GITFIGPHWKVIELMGDKARSKEVMKKAG-------VPVVPGSDGVLK-SLEEAKALAR--EIGYPVLLKATAGGGG--- 164 (451)
T ss_dssp TCEESSSCHHHHHHHHSHHHHHHHHHHTT-------CCBCCBCSSSCC-CHHHHHHHHH--HHCSSEEEEECSSSSC---
T ss_pred CCeEECcCHHHHHHhcCHHHHHHHHHHcC-------CCCCCCcccccC-CHHHHHHHHH--HcCCCEEEEECCCCCC---
Confidence 55555 56888899999999888887642 5567665 342 2112222222 3679999999987664
Q ss_pred eeeEEEeccCCCCC------------C-CCCeeEEEeeecceeEEEEEEEcc
Q 022979 176 HELFLAYDRFSLSE------------L-EPPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 176 H~Maivf~~~gL~~------------L-~~P~VlQeFINH~gvLfKVYVvGd 214 (289)
..+.++.+++.|.. + ..++++||||..+ .=|-|.+++|
T Consensus 165 ~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~-~e~~v~v~~~ 215 (451)
T 1ulz_A 165 RGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENP-KHIEYQVLGD 215 (451)
T ss_dssp CSCEEESSHHHHHHHHHHHHHHHHHTTSCCCEEEEECCCSC-EEEEEEEEEC
T ss_pred ccEEEeCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEcccCC-eEEEEEEEEc
Confidence 56788888876642 1 4689999999853 4566666654
No 60
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=96.03 E-value=0.0078 Score=59.93 Aligned_cols=105 Identities=16% Similarity=0.198 Sum_probs=66.2
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEE----EcC---------------------CCCCchhH
Q 022979 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMV----ITK---------------------DSLSIPDQ 152 (289)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~----i~~---------------------~~~~~~~~ 152 (289)
.+.++ -++++++.+.|+..+.+.+++.. |.+|++.. ++. ...+..+.
T Consensus 148 Gi~~iGp~~~ai~~~~DK~~~k~ll~~~G-------VPvp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~ea 220 (540)
T 3glk_A 148 GVAFLGPPSEAMWALGDKIASTVVAQTLQ-------VPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEG 220 (540)
T ss_dssp TCEESSCCHHHHC---CHHHHHHHHHHTT-------CCBCCBTTTTCCCCCCCTTC----CCCCCHHHHHHTSCCSHHHH
T ss_pred CCceeCCCHHHHHHhCCHHHHHHHHHHcC-------CCCCCcccccccccccccccccccccccccccccccCcCCHHHH
Confidence 67777 78889999999999999887653 34455432 000 01111111
Q ss_pred HH-hcCCccceEeeeccccCCCCceeeEEEeccCCCCCC---------CCCeeEEEeeecceeEEEEEEEcc
Q 022979 153 VF-EAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL---------EPPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 153 l~-~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~L---------~~P~VlQeFINH~gvLfKVYVvGd 214 (289)
.+ ...+.||+|+||....| +..|.+|.+++.|... ..++++|+||.. +.=|=|-|+||
T Consensus 221 ~~~a~~igyPvVVKp~~ggG---G~Gv~iv~~~~eL~~a~~~~~~~~~~~~vlVEe~I~g-~rei~V~vl~d 288 (540)
T 3glk_A 221 LEAAERIGFPLMIKASEGGG---GKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQH-ARHLEVQILAD 288 (540)
T ss_dssp HHHHHHHCSSEEEEETTCC-------EEEECSTTTHHHHHHHHHHHSTTCCEEEEECCSS-EEEEEEEEEEC
T ss_pred HHHHHhcCCcEEEEECCCCC---CCCEEEECCHHHHHHHHHHHHhhccCCCEEEEEecCC-CcEEEEEEEEc
Confidence 11 23578999999988665 5789999999987531 468999999964 46667777766
No 61
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=95.84 E-value=0.005 Score=58.68 Aligned_cols=102 Identities=15% Similarity=0.232 Sum_probs=68.1
Q ss_pred CeEEeC-ChhHHhhhccHHHHHHHHhhcccCCCCCceecCceE--EEcCCCCCchhHHHhcCCccceEeeeccccCCCCc
Q 022979 99 EVTILD-PPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 175 (289)
Q Consensus 99 ~v~ViD-P~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~S 175 (289)
.+.++- ++++++...|+..+.+.+++.. |.+|++. .++ +.+++.+.+. .+.||+|+||....| +
T Consensus 98 gi~~~g~~~~~~~~~~dK~~~k~~l~~~g-------ip~p~~~~~~~~-~~~~~~~~~~--~~g~PvvvKp~~g~g---g 164 (451)
T 2vpq_A 98 QLKFIGPSYQSIQKMGIKDVAKAEMIKAN-------VPVVPGSDGLMK-DVSEAKKIAK--KIGYPVIIKATAGGG---G 164 (451)
T ss_dssp TCEESSSCHHHHHHHHSHHHHHHHHHHTT-------CCBCSBCSSCBS-CHHHHHHHHH--HHCSSEEEEETTCCT---T
T ss_pred CCeEECCCHHHHHHhcCHHHHHHHHHHcC-------CCcCCCcccCcC-CHHHHHHHHH--hcCCcEEEEECCCCC---C
Confidence 566655 4889999999999999887643 4566654 443 2222222222 367999999998665 4
Q ss_pred eeeEEEeccCCCCCC-------------CCCeeEEEeeecceeEEEEEEEcc
Q 022979 176 HELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 176 H~Maivf~~~gL~~L-------------~~P~VlQeFINH~gvLfKVYVvGd 214 (289)
..+.++.+++.|... ..++++||||.. +.=|-|.+++|
T Consensus 165 ~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g-~~e~~v~v~~~ 215 (451)
T 2vpq_A 165 KGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIEN-FRHIEIQIVGD 215 (451)
T ss_dssp CSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCCS-EEEEEEEEEEC
T ss_pred CCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCC-CeEEEEEEEEc
Confidence 678889888766421 468999999985 34455656543
No 62
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=95.83 E-value=0.01 Score=60.72 Aligned_cols=109 Identities=14% Similarity=0.224 Sum_probs=38.7
Q ss_pred HHHHHhCCCeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceE--EEcCCCCCchhHHHhcCCccceEeeec
Q 022979 91 EDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPL 167 (289)
Q Consensus 91 ~~y~~~hP~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~~~~l~~agl~fP~I~Kp~ 167 (289)
.+..+++ .+.++ -++++++.+.|+..+.+.+++. .|.+|++. .+. +.+++.+.. ..+.||+|+||.
T Consensus 92 a~~le~~-Gi~~iGp~~~ai~~~~dK~~~k~~l~~~-------GVPvpp~~~~~~~-s~~e~~~~a--~~igyPvVvKp~ 160 (681)
T 3n6r_A 92 AEALEAE-GVIFVGPPKGAIEAMGDKITSKKIAQEA-------NVSTVPGYMGLIE-DADEAVKIS--NQIGYPVMIKAS 160 (681)
T ss_dssp HHHHHTT-TCCCSSSCHHHHHHTTSHHHHHHHHHTT-------TCCCCCC------------------------------
T ss_pred HHHHHHc-CCceECCCHHHHHHhCCHHHHHHHHHHc-------CcCcCCccccCcC-CHHHHHHHH--HhcCCcEEEEEC
Confidence 3344444 66666 6789999999999999988754 35566653 332 222222222 357899999999
Q ss_pred cccCCCCceeeEEEeccCCCCCC-------------CCCeeEEEeeecceeEEEEEEEcc
Q 022979 168 VVDGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 168 vA~Gs~~SH~Maivf~~~gL~~L-------------~~P~VlQeFINH~gvLfKVYVvGd 214 (289)
...| +..|.++.+++.|... ..++++|+||... .=|=|-|++|
T Consensus 161 ~ggg---gkGv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEe~I~g~-rei~V~v~~d 216 (681)
T 3n6r_A 161 AGGG---GKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQP-RHIEIQVLCD 216 (681)
T ss_dssp ---------------------------------------------CCSC-EEEEEEEECC
T ss_pred CCCC---CCCEEEECCHHHHHHHHHHHHHHHHHhCCCCcEEEEeccCCC-cEEEEEEEEe
Confidence 7665 5779999999987632 2479999999863 5566777765
No 63
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=95.76 E-value=0.0082 Score=61.35 Aligned_cols=103 Identities=13% Similarity=0.184 Sum_probs=64.7
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEE-cCCCCCchhHHHhcCCccceEeeeccccCCCCce
Q 022979 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVI-TKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH 176 (289)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i-~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH 176 (289)
.+.++ -++++++.+.|+..+.+.+++.. |.+|++... -.+.+++.+... .+.||+|+||....| +.
T Consensus 125 Gi~~iGp~~~ai~~~~DK~~~k~~l~~~G-------Vpvpp~~~~~~~s~~e~~~~a~--~igyPvvvKp~~G~G---g~ 192 (675)
T 3u9t_A 125 GLLFLGPPAAAIDAMGSKSAAKALMEEAG-------VPLVPGYHGEAQDLETFRREAG--RIGYPVLLKAAAGGG---GK 192 (675)
T ss_dssp TCEESSCCHHHHHHHTSHHHHHHHHHHTT-------CCBCCCCCSCCCCTTHHHHHHH--HSCSSBCCBCCC--------
T ss_pred CCceeCCCHHHHHHhchHHHHHHHHHHcC-------cCcCCccccCCCCHHHHHHHHH--hCCCcEEEEECCCCC---Cc
Confidence 45555 67899999999999998887643 455655431 113332322222 478999999998766 56
Q ss_pred eeEEEeccCCCC----CC---------CCCeeEEEeeecceeEEEEEEEcc
Q 022979 177 ELFLAYDRFSLS----EL---------EPPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 177 ~Maivf~~~gL~----~L---------~~P~VlQeFINH~gvLfKVYVvGd 214 (289)
.|.++.+++.|. .+ ..++++|+||... .=|=|-|++|
T Consensus 193 Gv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEeyI~g~-reiev~v~~d 242 (675)
T 3u9t_A 193 GMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLKP-RHVEIQVFAD 242 (675)
T ss_dssp -CCCBCCTTTHHHHHSCCCC--------CCCBCCBCCSSC-BCEEEEEEEC
T ss_pred cEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEeecCCC-cEEEEEEEEc
Confidence 799999998764 22 3589999999864 3344455543
No 64
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=95.36 E-value=0.034 Score=60.15 Aligned_cols=102 Identities=9% Similarity=0.187 Sum_probs=65.9
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceE--EEcCCCCCchhHHHhcCCccceEeeeccccCCCCc
Q 022979 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 175 (289)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~S 175 (289)
.+.++ -++++++.+.|+..+.+.+++. .|.+|++. .++ +.++..+.. ..+.||+|+||....| +
T Consensus 102 Gi~~iGp~~eai~~~~DK~~~r~ll~~a-------GIPvpp~~~~~v~-s~eea~~~a--~~iGyPvVVKP~~GgG---g 168 (1150)
T 3hbl_A 102 GIKFIGPHLEHLDMFGDKVKARTTAIKA-------DLPVIPGTDGPIK-SYELAKEFA--EEAGFPLMIKATSGGG---G 168 (1150)
T ss_dssp TCEESSSCHHHHHHHHSHHHHHHHHHHT-------TCCBCCBCSSCBC-SSSTTTTTG--GGTCSSEEEECCC-------
T ss_pred CCCeeCCCHHHHHHhCCHHHHHHHHHHc-------CcCCCCccccCCC-CHHHHHHHH--HHcCCCEEEEeCCCCC---C
Confidence 56666 6779999999999999988764 35566665 343 222222222 3578999999998665 5
Q ss_pred eeeEEEeccCCCCC----C---------CCCeeEEEeeecceeEEEEEEEcc
Q 022979 176 HELFLAYDRFSLSE----L---------EPPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 176 H~Maivf~~~gL~~----L---------~~P~VlQeFINH~gvLfKVYVvGd 214 (289)
..|.++.+++.|.. + ..++++|+||... .=|=|-|+||
T Consensus 169 ~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~vlVEeyI~G~-reieV~vl~d 219 (1150)
T 3hbl_A 169 KGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNP-KHIEVQVIGD 219 (1150)
T ss_dssp ---CEECCSSSCTHHHHSSSSSCC------CBEEECCCSSC-EEEEEEEEEC
T ss_pred CCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEccCCC-cEEEEEEEEe
Confidence 77999999998852 1 3579999999753 4456666665
No 65
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.85 E-value=0.0024 Score=48.40 Aligned_cols=65 Identities=15% Similarity=0.314 Sum_probs=41.9
Q ss_pred ceecCceE--EEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEEEeccCCCCC------------C-CCCeeEE
Q 022979 133 KVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE------------L-EPPMLLQ 197 (289)
Q Consensus 133 ~i~~P~~v--~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~------------L-~~P~VlQ 197 (289)
.|.+|++. .+. +.++..+.. ..+.||+|+||....|+ ..+.++.+++.|.. . ..++++|
T Consensus 20 gip~p~~~~~~~~-~~~~~~~~~--~~~~~P~vvKp~~~~~~---~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve 93 (108)
T 2cqy_A 20 EVNTIPGFDGVVK-DAEEAVRIA--REIGYPVMIKASAGGGG---KGMRIAWDDEETRDGFRLSSQEAASSFGDDRLLIE 93 (108)
T ss_dssp CCCCCSCCCSCBS-SHHHHHHHH--HHHCSSEEEEETTSCCT---TTCEEESSHHHHHHHHHHHHHHHHHHTSSCCEEEE
T ss_pred CCCCCCCcccccC-CHHHHHHHH--HhcCCCEEEEECCCCCC---ccEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEe
Confidence 46777775 443 211111111 24689999999986654 46778888876642 1 3689999
Q ss_pred Eeeecc
Q 022979 198 EFVNHG 203 (289)
Q Consensus 198 eFINH~ 203 (289)
|||...
T Consensus 94 e~i~g~ 99 (108)
T 2cqy_A 94 KFIDNP 99 (108)
T ss_dssp ECCSSS
T ss_pred eccCCC
Confidence 999753
No 66
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=94.74 E-value=0.056 Score=58.58 Aligned_cols=102 Identities=15% Similarity=0.230 Sum_probs=36.0
Q ss_pred CeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCceE--EEcCCCCCchhHHHhcCCccceEeeeccccCCCCc
Q 022979 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 175 (289)
Q Consensus 99 ~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~S 175 (289)
.+.++ -++++++.+.|+..+.+.+++. .|.+|++. .++ +.+++.+.. ..+.||+|+||....| +
T Consensus 118 Gi~~iGp~~~ai~~~~DK~~~k~~l~~~-------GIPvp~~~~~~v~-s~eea~~~a--~~igyPvVVKp~~g~G---G 184 (1165)
T 2qf7_A 118 GIIFIGPKADTMRQLGNKVAARNLAISV-------GVPVVPATEPLPD-DMAEVAKMA--AAIGYPVMLKASWGGG---G 184 (1165)
T ss_dssp TCEESSCCHHHHHHHHSHHHHHHHHHHT-------TCCBC----------------------------------------
T ss_pred CCceECCCHHHHHHHCCHHHHHHHHHHc-------CCCCCCeeCcCCC-CHHHHHHHH--HhcCCCEEEEeCCCCC---C
Confidence 56665 4588999999999998888764 35567776 343 222222221 3578999999998766 4
Q ss_pred eeeEEEeccCCCCCC-------------CCCeeEEEeeecceeEEEEEEEcc
Q 022979 176 HELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 176 H~Maivf~~~gL~~L-------------~~P~VlQeFINH~gvLfKVYVvGd 214 (289)
..|.++.+++.|.+. ..++++||||.. +.=|=|.+++|
T Consensus 185 ~Gv~iv~s~eEL~~a~~~~~~~a~~~fg~~~vlVEefI~g-g~EisV~vl~D 235 (1165)
T 2qf7_A 185 RGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVER-ARHVESQILGD 235 (1165)
T ss_dssp -----------------------------------CCCSS-EEEEEEEEEEC
T ss_pred CCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEeccC-CcEEEEEEEEc
Confidence 679999999887532 257999999985 45577777776
No 67
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=94.68 E-value=0.043 Score=59.80 Aligned_cols=109 Identities=17% Similarity=0.266 Sum_probs=35.4
Q ss_pred HHHHHhCCCeEEe-CChhHHhhhccHHHHHHHHhhcccCCCCCceecCc-eEEEcCCCCCchhHHHhcCCccceEeeecc
Q 022979 91 EDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPR-QMVITKDSLSIPDQVFEAGLKLPLVAKPLV 168 (289)
Q Consensus 91 ~~y~~~hP~v~Vi-DP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~-~v~i~~~~~~~~~~l~~agl~fP~I~Kp~v 168 (289)
.+..++. .+.++ -++++++.+.|+..+.+.+++.. |.+|+ +..++ +.++..+. ...+.||+|+||..
T Consensus 121 a~~le~~-Gi~~iGps~eai~~~~DK~~ak~ll~~aG-------IPvpp~~~~v~-s~eea~~~--a~~iGyPvVVKP~~ 189 (1236)
T 3va7_A 121 SDRCSQE-NIVFVGPSGDAIRKLGLKHSAREIAERAK-------VPLVPGSGLIK-DAKEAKEV--AKKLEYPVMVKSTA 189 (1236)
T ss_dssp HHHHHTT-TCEESSCCHHHHHHHHSTTHHHHHHHHTT-------CCCCC-------------------------------
T ss_pred HHHHHHC-CCCeeCCCHHHHHHhcCHHHHHHHHHHcC-------CCCCCeeEecC-CHHHHHHH--HHHcCCCEEEEeCC
Confidence 3344443 56665 77889999999999998887643 44544 33333 22222222 23578999999987
Q ss_pred ccCCCCceeeEEEeccCCCCCC-------------CCCeeEEEeeecceeEEEEEEEcc
Q 022979 169 VDGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE 214 (289)
Q Consensus 169 A~Gs~~SH~Maivf~~~gL~~L-------------~~P~VlQeFINH~gvLfKVYVvGd 214 (289)
..| +..|.++.+++.|.+. ..++++||||.. +.=|=|.|++|
T Consensus 190 GgG---GkGV~iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~G-~rEisV~vl~D 244 (1236)
T 3va7_A 190 GGG---GIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNN-ARHVEIQMMGD 244 (1236)
T ss_dssp ----------------------------------------------C-CEEEEEEEEEE
T ss_pred CCC---CCCEEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccCC-CeEEEEEEEec
Confidence 665 5779999999987531 247999999986 45566667766
No 68
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=89.80 E-value=0.13 Score=45.05 Aligned_cols=93 Identities=12% Similarity=0.084 Sum_probs=57.0
Q ss_pred hccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeecccc--CCCCceeeEE-EeccCCCC
Q 022979 112 LHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVD--GSAKSHELFL-AYDRFSLS 188 (289)
Q Consensus 112 l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~--Gs~~SH~Mai-vf~~~gL~ 188 (289)
.+|...+.+.+++. .|.+|++..+++. ++.... ...+.||+|+||...+ |..++-...+ +.+++.|.
T Consensus 19 ~l~k~~~k~ll~~~-------GIp~p~~~~~~~~-~ea~~~--a~~lg~PvvvKp~~~~~~~r~~~gGv~~~v~~~~el~ 88 (238)
T 1wr2_A 19 AMVEYEAKQVLKAY-------GLPVPEEKLAKTL-DEALEY--AKEIGYPVVLKLMSPQILHKSDAKVVMLNIKNEEELK 88 (238)
T ss_dssp EECHHHHHHHHHTT-------TCCCCCCEEESSH-HHHHHH--HHHHCSSEEEEEECTTCCCHHHHTCEEEEECSHHHHH
T ss_pred CCCHHHHHHHHHHc-------CcCCCCeEEeCCH-HHHHHH--HHHhCCCEEEEEccCCCCcCCccCCEEEeCCCHHHHH
Confidence 46777777777643 4778998888522 111111 1247899999998751 1123444555 67877664
Q ss_pred CC----------------CCCeeEEEeeecceeEEEEEEEcce
Q 022979 189 EL----------------EPPMLLQEFVNHGGILFKIYIIGET 215 (289)
Q Consensus 189 ~L----------------~~P~VlQeFINH~gvLfKVYVvGd~ 215 (289)
.. ..++++|+||.++ .=|=|-+++|.
T Consensus 89 ~a~~~~~~~~~~~~~~~~~~~vlVEe~i~~g-~E~~v~v~~d~ 130 (238)
T 1wr2_A 89 KKWEEIHENAKKYRPDAEILGVLVAPMLKPG-REVIIGVTEDP 130 (238)
T ss_dssp HHHHHHHHHHHHHCTTCCCCEEEEEECCCCC-EEEEEEEEEET
T ss_pred HHHHHHHHhhhhhCCCCccceEEEEECCCCC-eEEEEEEEeCC
Confidence 21 1579999999964 44455566664
No 69
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=88.91 E-value=0.64 Score=43.77 Aligned_cols=133 Identities=17% Similarity=0.158 Sum_probs=72.0
Q ss_pred HHHHHHHhcCcEEEEccCCCCCC---CCCCceEEE-ec-ccchHHHHHHHHHHHh---------------------CCCe
Q 022979 47 KLEILARNKGISFVAIDQNRPLS---DQGPFDVVL-HK-LSGMEWCKIIEDYRQK---------------------HPEV 100 (289)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~pl~---~Qgp~DvIL-HK-ltd~~~~~~l~~y~~~---------------------hP~v 100 (289)
.+...|++.|+.++-+|.+.+-. .....|-++ -- ..|....+.+++..+. .-.+
T Consensus 31 ~l~~aAk~lG~~vi~vd~~~~~p~~~~~~~ad~~~~~d~~~d~~~~~~l~~l~~~~~vV~pe~~~v~~~gl~~l~~~~g~ 110 (361)
T 2r7k_A 31 HILKGAKLEGFSTVCITMKGRDVPYKRFKVADKFIYVDNFSDIKNEEIQEKLRELNSIVVPHGSFIAYCGLDNVENSFLV 110 (361)
T ss_dssp HHHHHHHHTTCCEEEEECTTSCHHHHHTTCCSEEEECSSGGGGGSHHHHHHHHHTTEEECCBHHHHHHHCHHHHHHTCCS
T ss_pred HHHHHHHHCCCEEEEEECCCCCCcccccccCceEEECCCcccccHHHHHHHHHHcCCEEEeCchhhhHHHHHHHHHHcCC
Confidence 36777899999999999885421 122334333 22 3340001122222222 1223
Q ss_pred EEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCCCCceeeEE
Q 022979 101 TILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL 180 (289)
Q Consensus 101 ~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs~~SH~Mai 180 (289)
.+.-+..+++.-.+|...-+.+++. .|.+|++ ++ +.+ .+.||+|+||.-+.| ++...+
T Consensus 111 ~v~g~~~a~~~e~~k~~~k~~l~~~-------GIptp~~--~~-~~~---------e~~~PvVVK~~~~a~---GkGv~v 168 (361)
T 2r7k_A 111 PMFGNRRILRWESERSLEGKLLREA-------GLRVPKK--YE-SPE---------DIDGTVIVKFPGARG---GRGYFI 168 (361)
T ss_dssp CBBSCGGGGGTTTCHHHHHHHHHHT-------TCCCCCE--ES-SGG---------GCCSCEEEECSCCCC------EEE
T ss_pred CcCCCHHHHHHhhhHHHHHHHHHHc-------CcCCCCE--eC-CHH---------HcCCCEEEeeCCCCC---CCCEEE
Confidence 3334444444445555444455443 3556765 32 211 125999999987554 688999
Q ss_pred EeccCCCCC----C--------C--CCeeEEEeee
Q 022979 181 AYDRFSLSE----L--------E--PPMLLQEFVN 201 (289)
Q Consensus 181 vf~~~gL~~----L--------~--~P~VlQeFIN 201 (289)
+.+.+.+.. + . .++|+||||+
T Consensus 169 ~~s~ee~~~a~~~~~~~~~~~~~~~~~viIEEfl~ 203 (361)
T 2r7k_A 169 ASSTEEFYKKAEDLKKRGILTDEDIANAHIEEYVV 203 (361)
T ss_dssp ESSHHHHHHHHHHHHHTTSCCHHHHHHCEEEECCC
T ss_pred ECCHHHHHHHHHHHHhccccccCCCCeEEEEeccc
Confidence 998887642 1 2 4799999998
No 70
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=77.10 E-value=28 Score=35.14 Aligned_cols=175 Identities=13% Similarity=0.102 Sum_probs=98.5
Q ss_pred EEEEEechhhhhhccchHHHHHHHhcCcEEEEcc-CCCC-CCCCC--------CceEEEecccchHHH-HHHH-------
Q 022979 30 VVGYALTSKKKKSFLQPKLEILARNKGISFVAID-QNRP-LSDQG--------PFDVVLHKLSGMEWC-KIIE------- 91 (289)
Q Consensus 30 ~VGy~l~~kK~~~~~~~~l~~~~~~~gi~~v~iD-~~~p-l~~Qg--------p~DvILHKltd~~~~-~~l~------- 91 (289)
+|..+..+--.....-.-|.+.|++.|++...+| ++.= +.+.| ++|+|. |+.-.+|. ..+.
T Consensus 381 ~v~~a~~~~~Ed~~t~~~L~~~a~eaG~~~~~~~~i~dl~~~~~G~l~d~dg~~I~~lf-klypwE~m~~~~~~~~~~~~ 459 (619)
T 2io8_A 381 FVHIMQDKDIEENYHAQFMEQALHQAGFETRILRGLDELGWDAAGQLIDGEGRLVNCVW-KTWAWETAFDQIREVSDREF 459 (619)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEESSTTCEECSSSCEECTTSCBCCEEE-ESSCHHHHHHHHHHC---CC
T ss_pred EEEEEecCCccchHHHHHHHHHHHHCCCceEEecchHhEEECCCCcEECCCCCEeeeEE-ecCCHHHHHHHhhhhccccc
Confidence 5555433322222222348889999999999997 5511 12222 566554 46666654 2220
Q ss_pred --------------HHHH--hCCCeEEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHh
Q 022979 92 --------------DYRQ--KHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFE 155 (289)
Q Consensus 92 --------------~y~~--~hP~v~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~ 155 (289)
++.+ ....+.+|.|+.++- +.|+..+ ..|-++... + +--.|.++ +.+. .+..
T Consensus 460 ~~~~~~~g~~~~g~~ll~~l~~~~v~iieP~~~~l-lsNKail-alLw~l~p~--h-p~LLpT~f----~~~~---~l~~ 527 (619)
T 2io8_A 460 AAVPIRTGHPQNEVRLIDVLLRPEVLVFEPLWTVI-PGNKAIL-PILWSLFPH--H-RYLLDTDF----TVND---ELVK 527 (619)
T ss_dssp SSCCCCSCCSSCCCCHHHHHTCTTCEEESCGGGGT-TTSTTHH-HHHHHHSTT--C-TTCCCEES----SCCH---HHHH
T ss_pred ccccccccCccchHHHHHHHHhCCCEEECHHHHHH-hhhHHHH-HHHHHhCCC--C-CCCCCeee----cCCc---cccc
Confidence 3433 356899999999876 7886543 333333211 1 11233332 1111 1222
Q ss_pred cCCccceEeeeccccCCCCceeeEEEec-cCCCC----C-CCCCeeEEEeeecc-----eeEEEEEEEcceEE-EEEecC
Q 022979 156 AGLKLPLVAKPLVVDGSAKSHELFLAYD-RFSLS----E-LEPPMLLQEFVNHG-----GILFKIYIIGETIK-VVRRFS 223 (289)
Q Consensus 156 agl~fP~I~Kp~vA~Gs~~SH~Maivf~-~~gL~----~-L~~P~VlQeFINH~-----gvLfKVYVvGd~v~-vv~R~S 223 (289)
. .+|.||+..-+. ..|.|+-+ .+.+. . -+.++|.|+|+.-- -.++=+|+||+++. +..|-+
T Consensus 528 ~----~yV~KPi~gReG---~nV~i~~~~~~~~~~~~~~y~~~~~IyQe~~~lp~~d~~~~~iG~f~vgg~~aG~~~R~~ 600 (619)
T 2io8_A 528 T----GYAVKPIAGRCG---SNIDLVSHHEEVLDKTSGKFAEQKNIYQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRGD 600 (619)
T ss_dssp H----CEEEEETTCCTT---TTCEEECTTSCEEEECCCTTTTSCEEEEECCCCCEETTEEEEEEEEEETTEEEEEEEEEE
T ss_pred C----CEEEccCCCCCC---CCEEEEeCCChhHhhccccccCCCeEEEEecCCCCcCCcceEEEEEEECCEEEEEEEecC
Confidence 2 499999996654 44777754 21111 1 13689999999853 45577899998654 667766
Q ss_pred C
Q 022979 224 L 224 (289)
Q Consensus 224 L 224 (289)
-
T Consensus 601 ~ 601 (619)
T 2io8_A 601 E 601 (619)
T ss_dssp S
T ss_pred C
Confidence 3
No 71
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=76.34 E-value=0.95 Score=43.27 Aligned_cols=79 Identities=22% Similarity=0.091 Sum_probs=49.2
Q ss_pred ceecCceEEEcCCCCCchhHHHhcCCccceEeeeccc-cCCCCceeeEEEeccCCCCC-----C--------CCCeeEEE
Q 022979 133 KVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVV-DGSAKSHELFLAYDRFSLSE-----L--------EPPMLLQE 198 (289)
Q Consensus 133 ~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA-~Gs~~SH~Maivf~~~gL~~-----L--------~~P~VlQe 198 (289)
.|.+|++.++.+ .++..+... .+.||+++||... -|..++.-+.++.+++.+.+ + -..+++||
T Consensus 16 GIpvp~~~~~~s-~eea~~aa~--~lG~PvVvKa~~~~ggkg~~GGV~l~~s~ee~~~a~~~~~~~~~~g~~~~~vlVEe 92 (397)
T 3ufx_B 16 GVPVPPGKVAYT-PEEAKRIAE--EFGKRVVIKAQVHVGGRGKAGGVKLADTPQEAYEKAQAILGMNIKGLTVKKVLVAE 92 (397)
T ss_dssp TCCCCCEEEESS-HHHHHHHHH--HHTSCEEEEECCSSSCTTTTTCEEEESSHHHHHHHHHHHTTCEETTEECCCEEEEE
T ss_pred CCCCCCeEEECC-HHHHHHHHH--HcCCCEEEEEccccCCCCccceEEEeCCHHHHHHHHHHhhhhhccCCccceEEEEE
Confidence 578899988853 112222222 3459999999872 34456678888877765531 1 24799999
Q ss_pred eeecceeEEEEEEEcce
Q 022979 199 FVNHGGILFKIYIIGET 215 (289)
Q Consensus 199 FINH~gvLfKVYVvGd~ 215 (289)
|++++--+ =|-++.|.
T Consensus 93 ~v~~g~El-~vgv~~D~ 108 (397)
T 3ufx_B 93 AVDIAKEY-YAGLILDR 108 (397)
T ss_dssp CCCEEEEE-EEEEEEET
T ss_pred eecCCeeE-EEEEEecC
Confidence 99875333 34445553
No 72
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=66.78 E-value=1.8 Score=41.24 Aligned_cols=80 Identities=13% Similarity=0.094 Sum_probs=50.4
Q ss_pred ceecCceEEEcCCCCCchhHHHhcCCccc-eEeeecccc-CCCCceeeEEEeccCCCCC---------C-----------
Q 022979 133 KVRVPRQMVITKDSLSIPDQVFEAGLKLP-LVAKPLVVD-GSAKSHELFLAYDRFSLSE---------L----------- 190 (289)
Q Consensus 133 ~i~~P~~v~i~~~~~~~~~~l~~agl~fP-~I~Kp~vA~-Gs~~SH~Maivf~~~gL~~---------L----------- 190 (289)
.|.+|++.++.+. ++..+.. ..+.|| +++||.... |..++.-+.++.+++.+.. +
T Consensus 16 GIpvp~~~~~~s~-eea~~aa--~~lG~P~vVvK~~~~~ggrg~~gGV~l~~s~eel~~a~~~~~~~~~~t~q~g~~g~~ 92 (388)
T 2nu8_B 16 GLPAPVGYACTTP-REAEEAA--SKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQP 92 (388)
T ss_dssp TCCCCCEEEESSH-HHHHHHH--HHHCSSCEEEEECCSSSCTTTTTCEEEECSHHHHHHHHHHHTTSEECCTTSCTTCEE
T ss_pred CcCCCCeeEECCH-HHHHHHH--HHhCCCeEEEEEecCCCCCCccCCEEEECCHHHHHHHHHHHhhhhhhccccCCCCcc
Confidence 4778999888521 1121221 246799 999998733 3346778888888765421 0
Q ss_pred CCCeeEEEeeecceeEEEEEEEcceE
Q 022979 191 EPPMLLQEFVNHGGILFKIYIIGETI 216 (289)
Q Consensus 191 ~~P~VlQeFINH~gvLfKVYVvGd~v 216 (289)
..++++|+|++++--+ =|-++.|..
T Consensus 93 ~~~vlVEe~v~~~~E~-~v~v~~D~~ 117 (388)
T 2nu8_B 93 VNQILVEAATDIAKEL-YLGAVVDRS 117 (388)
T ss_dssp CCCEEEEECCCEEEEE-EEEEEEETT
T ss_pred cceEEEEEccccCCcE-EEEEEEecc
Confidence 1369999999975333 355555644
No 73
>1sn9_A BBAT, tetrameric beta-BETA-alpha mini-protein; protein design, domain swapping, oligomerization, de novo protein; HET: DBZ; 1.20A {Synthetic} SCOP: k.14.1.1 PDB: 1sna_A* 1sne_A* 1xof_B* 1xof_A*
Probab=62.37 E-value=4.3 Score=23.68 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=17.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCe
Q 022979 263 LPPRPLLERLARELRHRLVNI 283 (289)
Q Consensus 263 ~p~~~~l~~iA~~LR~~LgL~ 283 (289)
.|++++-.++|+.||++.|..
T Consensus 4 ipsydfadelakllrqa~g~~ 24 (26)
T 1sn9_A 4 IPSYDFADELAKLLRQAXGXX 24 (26)
T ss_dssp BTTBCHHHHHHHHHHHHTC--
T ss_pred CCccchHHHHHHHHHHhhCcc
Confidence 577899999999999999864
No 74
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=51.11 E-value=23 Score=32.81 Aligned_cols=93 Identities=13% Similarity=0.213 Sum_probs=56.0
Q ss_pred CCCCCccEEEEEEechhh-hhhccch---HHHHHHHhcC--cEEEEccCCCCCCC---------CCCceEEEecccchHH
Q 022979 22 GVLQPERLVVGYALTSKK-KKSFLQP---KLEILARNKG--ISFVAIDQNRPLSD---------QGPFDVVLHKLSGMEW 86 (289)
Q Consensus 22 ~~~~~~~~~VGy~l~~kK-~~~~~~~---~l~~~~~~~g--i~~v~iD~~~pl~~---------Qgp~DvILHKltd~~~ 86 (289)
+....+.++||+..+-.. -++|++. ++...+++.| +++.-++....-++ +..+|+|+= +....
T Consensus 20 ~~~~~~~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G~~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii~--~g~~~ 97 (356)
T 3s99_A 20 GSMAEEKLKVGFIYIGPPGDFGWTYQHDQARKELVEALGDKVETTFLENVAEGADAERSIKRIARAGNKLIFT--TSFGY 97 (356)
T ss_dssp ------CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHTTTEEEEEECSCCTTHHHHHHHHHHHHTTCSEEEE--CSGGG
T ss_pred ccccCCCCEEEEEEccCCCchhHHHHHHHHHHHHHHHhCCceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEE--CCHHH
Confidence 335567899999996433 2456653 5778888899 88876665433211 134898873 45555
Q ss_pred HHHHHHHHHhCCC--eEEeCC---hhHHhhhccHH
Q 022979 87 CKIIEDYRQKHPE--VTILDP---PDAIKHLHNRQ 116 (289)
Q Consensus 87 ~~~l~~y~~~hP~--v~ViDP---~~~i~~l~dR~ 116 (289)
.+.+.+..+++|+ ++++|- ..++..+.-|.
T Consensus 98 ~~~~~~vA~~~Pdv~fv~id~~~~~~Nv~sv~~~~ 132 (356)
T 3s99_A 98 MDPTVKVAKKFPDVKFEHATGYKTADNMSAYNARF 132 (356)
T ss_dssp HHHHHHHHTTCTTSEEEEESCCCCBTTEEEEEECH
T ss_pred HHHHHHHHHHCCCCEEEEEeccccCCcEEEEEech
Confidence 5678888899998 555654 34555554443
No 75
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=46.76 E-value=6.4 Score=37.54 Aligned_cols=56 Identities=13% Similarity=0.197 Sum_probs=34.7
Q ss_pred hcCCccceEeeeccccCCCCceeeEEEeccCCCCCC----CCCeeEEEeeec------ce--eEEEEEEEc
Q 022979 155 EAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL----EPPMLLQEFVNH------GG--ILFKIYIIG 213 (289)
Q Consensus 155 ~agl~fP~I~Kp~vA~Gs~~SH~Maivf~~~gL~~L----~~P~VlQeFINH------~g--vLfKVYVvG 213 (289)
..|-.-+||+||...+. ...+.|+-+.+.+.+. ..+.|+|+||.. +| .=+.+||+-
T Consensus 143 ~~~~~~~wI~KP~~~sr---G~GI~l~~~~~~i~~~~~~~~~~~VvQkYI~~PlLi~~~grKFDlR~Yvlv 210 (380)
T 3tig_A 143 ENEEGNVWIAKSSSGAK---GEGILISSDATELLDFIDNQGQVHVIQKYLESPLLLEPGHRKFDIRSWVLV 210 (380)
T ss_dssp HTTCCCCEEEEESCC-------CCBCCSCSHHHHHHHHHHTSCEEEEECCSSBCCBTTTTBCEEEEEEEEE
T ss_pred hcCCCCeEEEeCCccCC---CCCEEEeCCHHHHHHHHhccCCcEEEEecccCceeecCCCceeEEEEEEEE
Confidence 35788999999976433 2345555444444321 458999999975 33 455778773
No 76
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=46.21 E-value=7.6 Score=36.96 Aligned_cols=95 Identities=18% Similarity=0.153 Sum_probs=53.4
Q ss_pred ceecCceEEEcCCCCCchhHHHhcCCcc-ceEeeeccccCCC-Cc-------eeeEEEeccCCCC----CC---------
Q 022979 133 KVRVPRQMVITKDSLSIPDQVFEAGLKL-PLVAKPLVVDGSA-KS-------HELFLAYDRFSLS----EL--------- 190 (289)
Q Consensus 133 ~i~~P~~v~i~~~~~~~~~~l~~agl~f-P~I~Kp~vA~Gs~-~S-------H~Maivf~~~gL~----~L--------- 190 (289)
.|.+|++.++.+ .++..+.. ..+.| |+++||.+.+|.. +. --+.++.+++.+. ++
T Consensus 16 GIpvp~~~~~~s-~~ea~~~a--~~lg~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~~e~~~a~~~~l~~~~~t~q 92 (395)
T 2fp4_B 16 GVKVQRFFVADT-ANEALEAA--KRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQ 92 (395)
T ss_dssp TCCCCCEEEESS-HHHHHHHH--HHHTCSSEEEEECCSSSCGGGCEETTSCBCSEEEESCHHHHHHHHHTTTTSEEECTT
T ss_pred CcCCCCeEEECC-HHHHHHHH--HHcCCCcEEEEEeeccCCCccCccccCCcCCEEEECCHHHHHHHHHHHhhcchhhhc
Confidence 477899988843 21122222 24678 8999999777642 11 3377777765442 11
Q ss_pred -------CCCeeEEEeeecceeEEEEEEEcceE--EEEEecC-CCCCchhh
Q 022979 191 -------EPPMLLQEFVNHGGILFKIYIIGETI--KVVRRFS-LPNVSKRE 231 (289)
Q Consensus 191 -------~~P~VlQeFINH~gvLfKVYVvGd~v--~vv~R~S-Lpn~~~~~ 231 (289)
-..+++|+|++++--+ =|-++.|.. ..+.--| ...+..+.
T Consensus 93 ~g~~g~~~~~vlVEe~v~~~~E~-~v~i~~D~~~~~pvi~~s~~GG~~iE~ 142 (395)
T 2fp4_B 93 TPKEGVKVNKVMVAEALDISRET-YLAILMDRSCNGPVLVGSPQGGVDIEE 142 (395)
T ss_dssp SCTTCEECCCEEEEECCCCSEEE-EEEEEEETTTTEEEEEEESSCSSCHHH
T ss_pred cCCCCCccceEEEEEccCCceeE-EEEEEEccccCceEEEEECCCCcccee
Confidence 1248999999976333 344555543 1333334 55554443
No 77
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=44.43 E-value=1.3e+02 Score=24.46 Aligned_cols=51 Identities=10% Similarity=0.068 Sum_probs=31.1
Q ss_pred CcEEEEccCCCCCCCCCCceEEE-----ecccchHHHHHHHHHHH-hCCC-eEEeCCh
Q 022979 56 GISFVAIDQNRPLSDQGPFDVVL-----HKLSGMEWCKIIEDYRQ-KHPE-VTILDPP 106 (289)
Q Consensus 56 gi~~v~iD~~~pl~~Qgp~DvIL-----HKltd~~~~~~l~~y~~-~hP~-v~ViDP~ 106 (289)
++.|+.-|+...-...+.||+|+ |-+++..+.+.+++..+ -.|+ ++++-|.
T Consensus 85 ~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 142 (217)
T 3jwh_A 85 RLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPN 142 (217)
T ss_dssp TEEEEECCTTSCCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred ceEEEeCCcccccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccC
Confidence 79999999865544457899998 33344445555555544 3455 4444443
No 78
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=39.09 E-value=2.4e+02 Score=28.60 Aligned_cols=162 Identities=12% Similarity=0.050 Sum_probs=83.4
Q ss_pred HHHHHHHhcCcEEEEcc-CCCCC--CC-------CC-CceEEEecccchHHHHHH-H------------------HHHH-
Q 022979 47 KLEILARNKGISFVAID-QNRPL--SD-------QG-PFDVVLHKLSGMEWCKII-E------------------DYRQ- 95 (289)
Q Consensus 47 ~l~~~~~~~gi~~v~iD-~~~pl--~~-------Qg-p~DvILHKltd~~~~~~l-~------------------~y~~- 95 (289)
-|.+.|++.|++...++ ++ .| .+ +| ++|+|.= +.-.+|.-.- . +|.+
T Consensus 414 yL~~~a~eaG~~t~~~~~i~-dL~~~~~G~l~D~~g~~Id~lfK-LyPwE~m~~~~~~~~~~~~~~~~g~p~~g~~~~~~ 491 (652)
T 2vob_A 414 YCMQAAEAVGLEGKLCILFD-EFRFDDNGHVVDSDGVRVRNVWK-TWMWESAITDYYAAREERGENWKPSPKDKVRLCDL 491 (652)
T ss_dssp HHHHHHHHTTCEEEEEETTT-TCEECTTSCEECTTSCBCCEEEE-CSCHHHHHHHHHHHHHHHCSSCCCCTTSBCCHHHH
T ss_pred HHHHHHHHCCCcEEEecchh-heEECCCCcEECCCCcEeeEEEe-cCCHHHHHHhhhhcccccccccccCccchhHHHHH
Confidence 38888999999998887 44 22 22 22 7777664 8777774322 0 2333
Q ss_pred -hCC--CeEEeCChhHHhhhccHHHHHHHHhhcccCCCCCceecCceEEEcCCCCCchhHHHhcCCccceEeeeccccCC
Q 022979 96 -KHP--EVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGS 172 (289)
Q Consensus 96 -~hP--~v~ViDP~~~i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp~vA~Gs 172 (289)
... .+.+|.|+-++ |+.=..++..|-++.... +--.|.++ +.. ..+.. -.+|.||+..-+.
T Consensus 492 l~~~~~~v~~ieP~wk~--LlsNKaiLalLW~l~p~h---p~LLpt~f----~~~---~~~~~----~~yV~KPi~gReG 555 (652)
T 2vob_A 492 LLGDDWEILYFEPMWKV--IPSNKAILPMIYHNHPEH---PAILKAEY----ELT---DELRK----HGYAKKPIVGRVG 555 (652)
T ss_dssp HSSSCTTSEEESCGGGG--TTTSTTHHHHHHHHCTTC---TTBCCEES----SCC---HHHHH----HCEEEEECC----
T ss_pred HhcCCCceEEeChhHHH--hhcCHHHHHHHHhcccCC---CCCCchhh----cCC---Ccccc----CCeEeccCCCCCC
Confidence 245 89999998543 333345566665543221 11234441 211 11211 2499999996655
Q ss_pred CCceeeEEEeccCC--CCC-----CCCCeeEEEeee-----cceeEEEEEEEcc-eEEEEEecCCCCCchh
Q 022979 173 AKSHELFLAYDRFS--LSE-----LEPPMLLQEFVN-----HGGILFKIYIIGE-TIKVVRRFSLPNVSKR 230 (289)
Q Consensus 173 ~~SH~Maivf~~~g--L~~-----L~~P~VlQeFIN-----H~gvLfKVYVvGd-~v~vv~R~SLpn~~~~ 230 (289)
+ .+.|+ +..+ ... -+-|+|.|||+. -+-.++=+|+||| ..-+..|-|--.++..
T Consensus 556 ~---nV~I~-~~~~~~~~~~~g~y~~~~~IyQe~~~lp~f~~~~~~iG~~lvg~~~aGi~iR~~~~~IT~~ 622 (652)
T 2vob_A 556 S---NVIIT-SGDGVVHAESGGKYGKRNMIYQQLFELKKQDDYYAIIGGWMIGDAFSGTGIREDKSVITGV 622 (652)
T ss_dssp ---------------------------CEEEEECCC--CBTTBCCEEEEEEETTEEEEEEEEC--------
T ss_pred C---CEEEE-cCCchhhhhcccccCCCCeEEEecccCCccCCcceEEEEEEECCEEEEEEEecCCcccccC
Confidence 3 35554 2222 111 146899999987 3567889999999 5556788775445443
No 79
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=37.01 E-value=1e+02 Score=25.89 Aligned_cols=65 Identities=14% Similarity=0.105 Sum_probs=39.4
Q ss_pred CccEEEEEEechhhhhhc---cchHHHHHHHhcCcEEEEccCCCCCCCCCCceEEEecccchHHHHHHHHHHHhCCCeEE
Q 022979 26 PERLVVGYALTSKKKKSF---LQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTI 102 (289)
Q Consensus 26 ~~~~~VGy~l~~kK~~~~---~~~~l~~~~~~~gi~~v~iD~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~V 102 (289)
.+..+||+.++.-- ..| ...++...|+++|+.++-.+..... ....+.++.+....++-+|
T Consensus 3 ~~~~~Ig~i~~~~~-~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~---------------~~~~~~~~~l~~~~vdgiI 66 (291)
T 3l49_A 3 LEGKTIGITAIGTD-HDWDLKAYQAQIAEIERLGGTAIALDAGRND---------------QTQVSQIQTLIAQKPDAII 66 (291)
T ss_dssp CTTCEEEEEESCCS-SHHHHHHHHHHHHHHHHTTCEEEEEECTTCH---------------HHHHHHHHHHHHHCCSEEE
T ss_pred CCCcEEEEEeCCCC-ChHHHHHHHHHHHHHHHcCCEEEEEcCCCCH---------------HHHHHHHHHHHHcCCCEEE
Confidence 34678999988543 222 2235888899999998877654321 2223445555555666555
Q ss_pred eCCh
Q 022979 103 LDPP 106 (289)
Q Consensus 103 iDP~ 106 (289)
+-|.
T Consensus 67 i~~~ 70 (291)
T 3l49_A 67 EQLG 70 (291)
T ss_dssp EESS
T ss_pred EeCC
Confidence 5554
No 80
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=32.95 E-value=93 Score=25.26 Aligned_cols=77 Identities=13% Similarity=0.111 Sum_probs=42.0
Q ss_pred cEEEEEEechhhhhhccch----HHHHHHHhcCcEEEEccCCCCCCCCCCceEEE-----ecccchHHHHHHHHHHH-hC
Q 022979 28 RLVVGYALTSKKKKSFLQP----KLEILARNKGISFVAIDQNRPLSDQGPFDVVL-----HKLSGMEWCKIIEDYRQ-KH 97 (289)
Q Consensus 28 ~~~VGy~l~~kK~~~~~~~----~l~~~~~~~gi~~v~iD~~~pl~~Qgp~DvIL-----HKltd~~~~~~l~~y~~-~h 97 (289)
..++|.=+++.-.+..... .+.. ....++.|+.-|+...-...+.||+|+ |-+++..+.+.+++..+ -.
T Consensus 54 ~~v~gvD~s~~~~~~a~~~~~~~~~~~-~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lk 132 (219)
T 3jwg_A 54 EQITGVDVSYSVLERAKDRLKIDRLPE-MQRKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTR 132 (219)
T ss_dssp CEEEEEESCHHHHHHHHHHHTGGGSCH-HHHTTEEEEECCSSSCCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTC
T ss_pred CEEEEEECCHHHHHHHHHHHHhhcccc-ccCcceEEEeCcccccccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhC
Confidence 5678887776533221110 0000 011279999999965444457899998 33444455555665544 34
Q ss_pred CC-eEEeCC
Q 022979 98 PE-VTILDP 105 (289)
Q Consensus 98 P~-v~ViDP 105 (289)
|+ +++..|
T Consensus 133 pgG~~i~~~ 141 (219)
T 3jwg_A 133 PQTVIVSTP 141 (219)
T ss_dssp CSEEEEEEE
T ss_pred CCEEEEEcc
Confidence 55 444433
No 81
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=31.29 E-value=1.4e+02 Score=25.53 Aligned_cols=66 Identities=15% Similarity=0.095 Sum_probs=41.5
Q ss_pred ccEEEEEEechhhhhhc--cchHHHHHHHhcCcEEEEccCCCCCCCCCCceEEEecccchHHHHHHHHHHHhCCCeEEeC
Q 022979 27 ERLVVGYALTSKKKKSF--LQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILD 104 (289)
Q Consensus 27 ~~~~VGy~l~~kK~~~~--~~~~l~~~~~~~gi~~v~iD~~~pl~~Qgp~DvILHKltd~~~~~~l~~y~~~hP~v~ViD 104 (289)
+..+||+.++.-.-.-| ...++...|+++|+.++-.+.+.. .....+.++.+..+.++-+|+-
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~---------------~~~~~~~i~~~~~~~vdgiIi~ 66 (330)
T 3uug_A 2 DKGSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQYADDD---------------IPNQLSQIENMVTKGVKVLVIA 66 (330)
T ss_dssp CCCEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEECTTC---------------HHHHHHHHHHHHHHTCSEEEEC
T ss_pred CCcEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEeeCCCC---------------HHHHHHHHHHHHHcCCCEEEEE
Confidence 45789999886532111 223577889999998876663211 1223455777777777877777
Q ss_pred Chh
Q 022979 105 PPD 107 (289)
Q Consensus 105 P~~ 107 (289)
|.+
T Consensus 67 ~~~ 69 (330)
T 3uug_A 67 SID 69 (330)
T ss_dssp CSS
T ss_pred cCC
Confidence 754
No 82
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=30.20 E-value=97 Score=25.93 Aligned_cols=74 Identities=12% Similarity=0.080 Sum_probs=42.9
Q ss_pred CccEEEEEEechhhhhhcc---chHHHHHHHhcCcEEEEccCCCCCCCC---------CCceEEEecccchHHHHHHHHH
Q 022979 26 PERLVVGYALTSKKKKSFL---QPKLEILARNKGISFVAIDQNRPLSDQ---------GPFDVVLHKLSGMEWCKIIEDY 93 (289)
Q Consensus 26 ~~~~~VGy~l~~kK~~~~~---~~~l~~~~~~~gi~~v~iD~~~pl~~Q---------gp~DvILHKltd~~~~~~l~~y 93 (289)
++..+||+.++.-. ..|. ..++...|+++|+.++-.+.+ ..+.| ..+|.|| +........+++
T Consensus 3 ~~~~~Igvi~~~~~-~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiI--~~~~~~~~~~~~- 77 (280)
T 3gyb_A 3 LRTQLIAVLIDDYS-NPWFIDLIQSLSDVLTPKGYRLSVIDSL-TSQAGTDPITSALSMRPDGII--IAQDIPDFTVPD- 77 (280)
T ss_dssp -CCCEEEEEESCTT-SGGGHHHHHHHHHHHGGGTCEEEEECSS-SSCSSSCHHHHHHTTCCSEEE--EESCC--------
T ss_pred CccCEEEEEeCCCC-ChHHHHHHHHHHHHHHHCCCEEEEEeCC-CchHHHHHHHHHHhCCCCEEE--ecCCCChhhHhh-
Confidence 35678999997643 2222 224777889999999988887 44432 5799999 543322333444
Q ss_pred HHhCCCeEEeCCh
Q 022979 94 RQKHPEVTILDPP 106 (289)
Q Consensus 94 ~~~hP~v~ViDP~ 106 (289)
..=.++++|-.
T Consensus 78 --~~iPvV~~~~~ 88 (280)
T 3gyb_A 78 --SLPPFVIAGTR 88 (280)
T ss_dssp ---CCCEEEESCC
T ss_pred --cCCCEEEECCC
Confidence 33346677643
No 83
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=26.93 E-value=1.5e+02 Score=22.35 Aligned_cols=79 Identities=29% Similarity=0.304 Sum_probs=46.0
Q ss_pred ccchHHHHHHHhcCcEE--EEccCCCCCCC-CCCceEEEecccchHHHHHHHHHHH-hCCCeEEeCChhHHhhhccHHHH
Q 022979 43 FLQPKLEILARNKGISF--VAIDQNRPLSD-QGPFDVVLHKLSGMEWCKIIEDYRQ-KHPEVTILDPPDAIKHLHNRQSM 118 (289)
Q Consensus 43 ~~~~~l~~~~~~~gi~~--v~iD~~~pl~~-Qgp~DvILHKltd~~~~~~l~~y~~-~hP~v~ViDP~~~i~~l~dR~~~ 118 (289)
+...++...++++|+++ -..+... +++ ...+|+||-=..=....+.+++... .+-.+++|+|.... .+|...+
T Consensus 19 ll~~kl~~~~~~~gi~~~i~~~~~~~-~~~~~~~~D~Ii~t~~l~~~~~~~~~~~~~~~~pv~~I~~~~y~--~~d~~~v 95 (109)
T 2l2q_A 19 MLVQRIEKYAKSKNINATIEAIAETR-LSEVVDRFDVVLLAPQSRFNKKRLEEITKPKGIPIEIINTIDYG--TMNGEKV 95 (109)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECSTT-HHHHTTTCSEEEECSCCSSHHHHHHHHHHHHTCCEEECCHHHHH--HTCHHHH
T ss_pred HHHHHHHHHHHHCCCCeEEEEecHHH-HHhhcCCCCEEEECCccHHHHHHHHHHhcccCCCEEEEChHHhc--cCCHHHH
Confidence 44446777788888753 3333331 111 2468999853322222344554443 35678889998774 5788777
Q ss_pred HHHHhh
Q 022979 119 LQDVAD 124 (289)
Q Consensus 119 l~~l~~ 124 (289)
++.+.+
T Consensus 96 l~~i~~ 101 (109)
T 2l2q_A 96 LQLAIN 101 (109)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666544
No 84
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=26.14 E-value=1.5e+02 Score=26.06 Aligned_cols=50 Identities=12% Similarity=0.110 Sum_probs=33.6
Q ss_pred cCcEEEEccCCCCCCCCCCceEEE-----ecccchHHHHHHHHHHH-hCCC--eEEeCCh
Q 022979 55 KGISFVAIDQNRPLSDQGPFDVVL-----HKLSGMEWCKIIEDYRQ-KHPE--VTILDPP 106 (289)
Q Consensus 55 ~gi~~v~iD~~~pl~~Qgp~DvIL-----HKltd~~~~~~l~~y~~-~hP~--v~ViDP~ 106 (289)
..++|+..|+..++.. .||+|+ |-+.|+...+.|++..+ -.|+ ++|+|+.
T Consensus 219 ~~v~~~~~d~~~~~p~--~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 276 (332)
T 3i53_A 219 GRAQVVVGSFFDPLPA--GAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAV 276 (332)
T ss_dssp TTEEEEECCTTSCCCC--SCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred cCeEEecCCCCCCCCC--CCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeec
Confidence 3599999999866554 799986 45566555666666554 2444 7777764
No 85
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=25.71 E-value=1.3e+02 Score=25.29 Aligned_cols=68 Identities=12% Similarity=0.060 Sum_probs=41.5
Q ss_pred CCccEEEEEEechhhhhhcc---chHHHHHHHhcCcEEEEccCCCCCCCCCCceEEEecccc-hHHHHHHHHHHHhCCCe
Q 022979 25 QPERLVVGYALTSKKKKSFL---QPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSG-MEWCKIIEDYRQKHPEV 100 (289)
Q Consensus 25 ~~~~~~VGy~l~~kK~~~~~---~~~l~~~~~~~gi~~v~iD~~~pl~~Qgp~DvILHKltd-~~~~~~l~~y~~~hP~v 100 (289)
+++..+||+.++.-.- .|. ..++...|+++|+.++-.+.+.. .+ ....+.++....+.++-
T Consensus 2 s~~~~~Igvi~~~~~~-~~~~~~~~g~~~~a~~~g~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~vdg 66 (304)
T 3o1i_D 2 SGSDEKICAIYPHLKD-SYWLSVNYGMVSEAEKQGVNLRVLEAGGY--------------PNKSRQEQQLALCTQWGANA 66 (304)
T ss_dssp ---CCEEEEEESCSCS-HHHHHHHHHHHHHHHHHTCEEEEEECSST--------------TCHHHHHHHHHHHHHHTCSE
T ss_pred CCCCcEEEEEeCCCCC-cHHHHHHHHHHHHHHHcCCeEEEEcCCCC--------------CCHHHHHHHHHHHHHcCCCE
Confidence 3457899999886431 222 22577788999999988776531 02 12344566667777777
Q ss_pred EEeCChh
Q 022979 101 TILDPPD 107 (289)
Q Consensus 101 ~ViDP~~ 107 (289)
+|+-|..
T Consensus 67 iii~~~~ 73 (304)
T 3o1i_D 67 IILGTVD 73 (304)
T ss_dssp EEECCSS
T ss_pred EEEeCCC
Confidence 7766654
No 86
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=24.52 E-value=95 Score=28.07 Aligned_cols=49 Identities=20% Similarity=0.151 Sum_probs=33.2
Q ss_pred CcEEEEccCCCC---CCCCCCceEEE-----ecccchHHHHHHHHHHHh-CCC--eEEeCCh
Q 022979 56 GISFVAIDQNRP---LSDQGPFDVVL-----HKLSGMEWCKIIEDYRQK-HPE--VTILDPP 106 (289)
Q Consensus 56 gi~~v~iD~~~p---l~~Qgp~DvIL-----HKltd~~~~~~l~~y~~~-hP~--v~ViDP~ 106 (289)
++.|+.-|+..+ +. +.||+|+ |-++|....+.|++..+. -|+ ++|+|+.
T Consensus 230 ~v~~~~~d~~~~~~~~p--~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 289 (363)
T 3dp7_A 230 RIHGHGANLLDRDVPFP--TGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETL 289 (363)
T ss_dssp GEEEEECCCCSSSCCCC--CCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred ceEEEEccccccCCCCC--CCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeec
Confidence 589999999863 54 6799986 445566666666666553 343 7777764
No 87
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=24.23 E-value=1.5e+02 Score=23.68 Aligned_cols=67 Identities=16% Similarity=0.178 Sum_probs=38.8
Q ss_pred EEEEEEechhhhhhccchHHHHHHHhc---CcEEEEccCCCCCCCCCCceEEE-----ecccchHHHHHHHHHHH-hCCC
Q 022979 29 LVVGYALTSKKKKSFLQPKLEILARNK---GISFVAIDQNRPLSDQGPFDVVL-----HKLSGMEWCKIIEDYRQ-KHPE 99 (289)
Q Consensus 29 ~~VGy~l~~kK~~~~~~~~l~~~~~~~---gi~~v~iD~~~pl~~Qgp~DvIL-----HKltd~~~~~~l~~y~~-~hP~ 99 (289)
.++|+=+++. .+..|++. ++.++..|+... ...+.||+|+ |-+.+..+.+.+++..+ -.|+
T Consensus 70 ~v~~~D~s~~---------~~~~a~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pg 139 (218)
T 3ou2_A 70 RVTALDGSAE---------MIAEAGRHGLDNVEFRQQDLFDW-TPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPG 139 (218)
T ss_dssp EEEEEESCHH---------HHHHHGGGCCTTEEEEECCTTSC-CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred eEEEEeCCHH---------HHHHHHhcCCCCeEEEecccccC-CCCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCC
Confidence 5667666554 33344443 489999999866 5567999998 44444333444444333 2233
Q ss_pred --eEEeCC
Q 022979 100 --VTILDP 105 (289)
Q Consensus 100 --v~ViDP 105 (289)
+++.++
T Consensus 140 G~l~~~~~ 147 (218)
T 3ou2_A 140 GVVEFVDV 147 (218)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEeC
Confidence 555554
No 88
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=23.63 E-value=49 Score=27.27 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=19.9
Q ss_pred CcEEEEccCCCCCCCCCCceEEEec
Q 022979 56 GISFVAIDQNRPLSDQGPFDVVLHK 80 (289)
Q Consensus 56 gi~~v~iD~~~pl~~Qgp~DvILHK 80 (289)
++.++..|....+...++||+|+=-
T Consensus 117 ~v~~~~~d~~~~~~~~~~fD~v~~~ 141 (231)
T 1vbf_A 117 NIKLILGDGTLGYEEEKPYDRVVVW 141 (231)
T ss_dssp SEEEEESCGGGCCGGGCCEEEEEES
T ss_pred CeEEEECCcccccccCCCccEEEEC
Confidence 6899999987766667899999843
No 89
>1mhx_A Immunoglobulin-binding protein G; alpha-beta protein, redesigned first beta-hairpin, immune SY; 1.80A {Finegoldia magna} SCOP: d.15.7.1 PDB: 1mi0_A
Probab=22.27 E-value=98 Score=21.78 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=17.8
Q ss_pred cceeEEEEE-EEcceEEEEEecCCC
Q 022979 202 HGGILFKIY-IIGETIKVVRRFSLP 225 (289)
Q Consensus 202 H~gvLfKVY-VvGd~v~vv~R~SLp 225 (289)
|.---||+| ||||+|.++.-+..-
T Consensus 7 hamdtyklfivigdrvvvt~tkavd 31 (65)
T 1mhx_A 7 HAMDTYKLFIVIGDRVVVVTTEAVD 31 (65)
T ss_dssp CCCEEEEEEEEETTEEEEEEEEESS
T ss_pred cccceeeEEEEEcCEEEEEEeehhh
Confidence 344568877 689999998877653
No 90
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=22.14 E-value=1e+02 Score=25.16 Aligned_cols=34 Identities=18% Similarity=0.279 Sum_probs=24.5
Q ss_pred HHHHHHHhcCcEEEEccCCCCCCCCCCceEEEec
Q 022979 47 KLEILARNKGISFVAIDQNRPLSDQGPFDVVLHK 80 (289)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~pl~~Qgp~DvILHK 80 (289)
..+..|+++++.++..|+...-...+.||+|+--
T Consensus 76 ~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 109 (219)
T 1vlm_A 76 RMAEIARKRGVFVLKGTAENLPLKDESFDFALMV 109 (219)
T ss_dssp HHHHHHHHTTCEEEECBTTBCCSCTTCEEEEEEE
T ss_pred HHHHHHHhcCCEEEEcccccCCCCCCCeeEEEEc
Confidence 3566777779999999986432234689999844
No 91
>3mi6_A Alpha-galactosidase; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium, hydrolase; 2.70A {Lactobacillus brevis}
Probab=22.09 E-value=67 Score=33.20 Aligned_cols=63 Identities=11% Similarity=0.125 Sum_probs=39.6
Q ss_pred hhhhccchHHHHHHHhcCcEEEEccCCCCCCCCCCceEEEecccchH-------HHHHHHHHHHhCCCeEE
Q 022979 39 KKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGME-------WCKIIEDYRQKHPEVTI 102 (289)
Q Consensus 39 K~~~~~~~~l~~~~~~~gi~~v~iD~~~pl~~Qgp~DvILHKltd~~-------~~~~l~~y~~~hP~v~V 102 (289)
..+.+....+.++.++.||+++++|+++.+.+-+--..==.+ ..+. .-+.+++..++||++++
T Consensus 455 evr~~i~~~l~~ll~~~GIDy~K~D~nr~i~~~~~~~~~~~~-q~~~~~~y~~g~y~ll~~l~~~~P~v~i 524 (745)
T 3mi6_A 455 EVVDYLFKLMSQMIESANLDYIKWDMNRYATEMFSSRLTSDQ-QLELPHRYILGVYQLYARLTQAYPNVLF 524 (745)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEECCCSCCCSCCCSSSCGGG-GGGHHHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCCCCCcccCCCcCcccc-ccHHHHHHHHHHHHHHHHHHhhCCCeEE
Confidence 456666666777788899999999999987643310000000 0111 22447778889999876
No 92
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=20.87 E-value=1.2e+02 Score=23.23 Aligned_cols=78 Identities=13% Similarity=0.076 Sum_probs=48.0
Q ss_pred hccchHHHHHHHhcCcEEEE--ccCCCCCCCC-CCceEEEecccchHH---HHHHHHHHHh-CCCeEEeCChhHHhhhcc
Q 022979 42 SFLQPKLEILARNKGISFVA--IDQNRPLSDQ-GPFDVVLHKLSGMEW---CKIIEDYRQK-HPEVTILDPPDAIKHLHN 114 (289)
Q Consensus 42 ~~~~~~l~~~~~~~gi~~v~--iD~~~pl~~Q-gp~DvILHKltd~~~---~~~l~~y~~~-hP~v~ViDP~~~i~~l~d 114 (289)
++.-.++...|+++|+++-- ..... +.+. ..+||||= +.+. .+.+++..+. +=.|.+|||-+-..-.+|
T Consensus 20 sllv~km~~~a~~~gi~v~i~a~~~~~-~~~~~~~~DvvLL---gPQV~y~~~~ik~~~~~~~ipV~vI~~~~Yg~~~~~ 95 (108)
T 3nbm_A 20 AQLANAINEGANLTEVRVIANSGAYGA-HYDIMGVYDLIIL---APQVRSYYREMKVDAERLGIQIVATRGMEYIHLTKS 95 (108)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEEETTS-CTTTGGGCSEEEE---CGGGGGGHHHHHHHHTTTTCEEEECCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHCCCceEEEEcchHH-HHhhccCCCEEEE---ChHHHHHHHHHHHHhhhcCCcEEEeCHHHhhhhhCC
Confidence 44445677788999987533 33332 3333 36899983 4433 2345555443 345889999877665688
Q ss_pred HHHHHHHHh
Q 022979 115 RQSMLQDVA 123 (289)
Q Consensus 115 R~~~l~~l~ 123 (289)
=..+++.+.
T Consensus 96 g~~vl~~~~ 104 (108)
T 3nbm_A 96 PSKALQFVL 104 (108)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776543
No 93
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=20.86 E-value=1.9e+02 Score=24.15 Aligned_cols=41 Identities=12% Similarity=0.131 Sum_probs=26.9
Q ss_pred CCccEEEEEEechhhhh--hccchHHHHHHHhcCcEEEEccCC
Q 022979 25 QPERLVVGYALTSKKKK--SFLQPKLEILARNKGISFVAIDQN 65 (289)
Q Consensus 25 ~~~~~~VGy~l~~kK~~--~~~~~~l~~~~~~~gi~~v~iD~~ 65 (289)
.++..+||+.++.-.-. .-...++...|+++|+.++-.+..
T Consensus 4 ~~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~ 46 (276)
T 3jy6_A 4 TQSSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDAN 46 (276)
T ss_dssp -CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECT
T ss_pred CCCCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 44667999999764311 111225777889999998877654
No 94
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=20.16 E-value=63 Score=26.97 Aligned_cols=24 Identities=17% Similarity=0.486 Sum_probs=19.9
Q ss_pred CcEEEEccCCCCCCCCCCceEEEe
Q 022979 56 GISFVAIDQNRPLSDQGPFDVVLH 79 (289)
Q Consensus 56 gi~~v~iD~~~pl~~Qgp~DvILH 79 (289)
++.++.-|...++.+.++||+|+=
T Consensus 141 ~v~~~~~d~~~~~~~~~~fD~Ii~ 164 (235)
T 1jg1_A 141 NVHVILGDGSKGFPPKAPYDVIIV 164 (235)
T ss_dssp SEEEEESCGGGCCGGGCCEEEEEE
T ss_pred CcEEEECCcccCCCCCCCccEEEE
Confidence 478889998778887788999983
Done!