RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 022979
(289 letters)
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1,
inositol 1,3,4-5/6 phosphate, inositol phosphate,
inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB:
2qb5_A* 2odt_X
Length = 346
Score = 249 bits (636), Expect = 1e-81
Identities = 77/270 (28%), Positives = 133/270 (49%), Gaps = 16/270 (5%)
Query: 26 PERLVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLS--- 82
+ VGY L+ KK K L R +G+ V ++ +RP+ +QGP DV++HKL+
Sbjct: 16 LKGKRVGYWLSEKKIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVI 75
Query: 83 ---------GMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGK 133
+E ++Y HPE +LDP AI+ L +R + + + + +
Sbjct: 76 LEADQNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDR 135
Query: 134 VRVPRQMVITK-DSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEP 192
+ P M +T + + GL P + K V G+ SHE+ + +++ L+ ++P
Sbjct: 136 ICSPPFMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGT-NSHEMAIVFNQEGLNAIQP 194
Query: 193 PMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASAD 252
P ++Q F+NH +L+K++++GE+ VV+R SL N S + F VS +S+
Sbjct: 195 PCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGTSDRESIFFNSHNVSKPESSSV 254
Query: 253 DADLDP--GIAELPPRPLLERLARELRHRL 280
+LD G+ E P ++ L+R LR L
Sbjct: 255 LTELDKIEGVFERPSDEVIRELSRALRQAL 284
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase,
ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba
histolytica} PDB: 1z2o_X* 1z2p_X*
Length = 324
Score = 226 bits (576), Expect = 6e-73
Identities = 47/277 (16%), Positives = 100/277 (36%), Gaps = 25/277 (9%)
Query: 21 SGVLQPERLVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHK 80
+ + + + L K+K+ + + L D+ P ++ +
Sbjct: 4 GSMTTKQTVSLFIWLPESKQKTLFISTKNHTQFELNNIIFDVTLSTELPDKEPNAIITKR 63
Query: 81 LSG-MEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQ 139
+ + Y + HP+V L+ + +R+ + + + +P
Sbjct: 64 THPVGKMADEMRKYEKDHPKVLFLESSAIHDMMSSREEINALLIK-------NNIPIPNS 116
Query: 140 MVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEF 199
+ + + L LP + KP G+ +H++ + ++ + ++ P L Q +
Sbjct: 117 FSVKSKE-EVIQLLQSKQLILPFIVKPENAQGTFNAHQMKIVLEQEGIDDIHFPCLCQHY 175
Query: 200 VNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVV-------SVFRFPRV-------- 244
+NH + K++ IG T+K R SLPNV + + V + +P
Sbjct: 176 INHNNKIVKVFCIGNTLKWQTRTSLPNVHRCGIKSVDFNNQHLEDILSWPEGVIDKQDII 235
Query: 245 -SSAAASADDADLDPGIAELPPRPLLERLARELRHRL 280
+SA DP + L + LA ++R L
Sbjct: 236 ENSANRFGSKILEDPILLNLTSEAEMRDLAYKVRCAL 272
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.5 bits (143), Expect = 4e-10
Identities = 43/323 (13%), Positives = 98/323 (30%), Gaps = 85/323 (26%)
Query: 9 HKEDEEDEEEKQSGVLQPERL------VVGYALTSKKKKSFLQPKLEILARNKGI----- 57
E + + + Q +RL Y ++ + L+ L L K +
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 58 -----SFVAID--QNRPLSDQGPFDV-------------VLHKLSGMEWCKIIEDYRQ-- 95
++VA+D + + + F + VL L + +I ++
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL-LYQIDPNWTSRS 217
Query: 96 ---KHPEVTILDPPDAIKHLHNRQS------MLQDVADLNLSDC-NGKVRVPRQMVITKD 145
+ ++ I ++ L + +L +V + + N ++ ++ T+
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI---LLTTRF 274
Query: 146 SLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNHGGI 205
+ D + A + + + L L Y +L P +L
Sbjct: 275 K-QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-PREVLT------TN 326
Query: 206 LFKIYIIGETIKV-VRRFS-LPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAEL 263
++ II E+I+ + + +V+ +L ++ + L
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS--------------------LNVL 366
Query: 264 PPRPLLERLARELRHRLVNILVF 286
P E R + VF
Sbjct: 367 EP--------AEYRKMFDRLSVF 381
Score = 30.6 bits (68), Expect = 0.64
Identities = 56/360 (15%), Positives = 104/360 (28%), Gaps = 98/360 (27%)
Query: 2 RLNGEISHKEDEEDEEEKQSGVLQ----PERLVVGYAL----TSKKKKSF-LQPKLEILA 52
R + + K + + +L+ L+V L +K +F L K+ +
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV---LLNVQNAKAWNAFNLSCKILLTT 272
Query: 53 RNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWC-KIIEDYRQKHPEVTILDPPDAI-- 109
R K ++ + L K ++ Q P + P +
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 110 --KHLHNRQSMLQDVADLNLSDCNGKVRV------P-------RQMVITKDSLSIPDQVF 154
+ + + + + +N + P ++ + S IP +
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 155 ----------EAGLKLPLVAKPLVVDGSAKS-----HELFL------------------A 181
+ + + + K +V+ K ++L
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 182 Y---DRFSLSELEPPMLLQEFVNHGGILFKIYIIG---ETIKVVRRFSLPNVSKRELAKV 235
Y F +L PP L Q F +H IG + I+ R +L V
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSH---------IGHHLKNIEHPERMTL-------FRMV 496
Query: 236 VSVFRFP----RVSSAAASADDADLDPGIAEL--------PPRPLLERLARELRHRLVNI 283
FRF R S A +A + L+ + +L P ERL + L I
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNT-LQQLKFYKPYICDNDPKYERLVNAILDFLPKI 555
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.024
Identities = 37/266 (13%), Positives = 71/266 (26%), Gaps = 104/266 (39%)
Query: 3 LNGEISHKE--DEEDEE------EKQSGVL------QPERLVVGYALTSKKKKSFLQPKL 48
++G++ ++ E +E + G+L QP ++ A K L P
Sbjct: 1697 VDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPAD 1756
Query: 49 EILARNKGIS---FVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDP 105
A G S + A L L+ ++
Sbjct: 1757 ATFA---GHSLGEYAA----------------LASLAD------------------VMSI 1779
Query: 106 PDAIKHLHNRQSMLQDVA--DLNLSDCNGKVRV-PRQMVITKDSLSIPDQVFEAGLKLPL 162
++ + R +Q D G + + P ++ S + +
Sbjct: 1780 ESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVA-----ASFSQEALQY------ 1828
Query: 163 VAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNH---GGILFKIYII-GET--- 215
VV+ K + E VN+ Y+ G+
Sbjct: 1829 -----VVERVGKRTGWLV-----------------EIVNYNVENQ----QYVAAGDLRAL 1862
Query: 216 ---IKVVRRFSLPNVSKRELAKVVSV 238
V+ L + EL K +S+
Sbjct: 1863 DTVTNVLNFIKLQKIDIIELQKSLSL 1888
Score = 33.9 bits (77), Expect = 0.067
Identities = 46/329 (13%), Positives = 92/329 (27%), Gaps = 151/329 (45%)
Query: 22 GVLQPERLVVGYALTSKKKKSFLQPKLEILARNKGIS----------FVAIDQNRPLSDQ 71
GV+Q + Y +T+K P E+ + KG + +A +D
Sbjct: 242 GVIQ----LAHYVVTAKLLG--FTPG-ELRSYLKGATGHSQGLVTAVAIA------ETDS 288
Query: 72 GP--FDVVLHKLSGMEWCKIIEDYR--QKHPEVTILDPP----DAIKHLHNRQS-MLQDV 122
F V ++ + + R + +P ++ PP D++++ S ML +
Sbjct: 289 WESFFVSVRKAITVLFFI----GVRCYEAYPNTSL--PPSILEDSLENNEGVPSPMLS-I 341
Query: 123 ADLNLSD-------CNG------KVRV-----PRQMVITKDSLSIPDQVFEAGLKLPLVA 164
++L N +V + + +V++ G
Sbjct: 342 SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS-------------G------- 381
Query: 165 KPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSL 224
PP L +R+
Sbjct: 382 ---------------------------PPQSLYGLNLT----------------LRKAKA 398
Query: 225 PN--------VSKRELAKVVSVFRFPRVSS--------AAASADDADLDPGIAELPPRPL 268
P+ S+R K+ RF V+S A+ + DL + +
Sbjct: 399 PSGLDQSRIPFSER---KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDI 455
Query: 269 ------------LERLARELRHRLVNILV 285
L L+ + R+V+ ++
Sbjct: 456 QIPVYDTFDGSDLRVLSGSISERIVDCII 484
Score = 33.5 bits (76), Expect = 0.083
Identities = 40/251 (15%), Positives = 76/251 (30%), Gaps = 77/251 (30%)
Query: 51 LARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIK 110
G S + I N P++ + +H G + +I E+Y + D
Sbjct: 1653 FKDTYGFSILDIVINNPVN------LTIH-FGGEKGKRIRENY----SAMIFETIVDG-- 1699
Query: 111 HLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKP-LVV 169
+ + ++N T + + L +P L +
Sbjct: 1700 ----KLKTEKIFKEINEH-------------STSYTFRSEKGL----LSATQFTQPALTL 1738
Query: 170 DGSA-----KSHELFLAYDRF---SLSE---LEPPMLLQEFVNHGGILFKIYIIGETIKV 218
A KS L A F SL E L + ++ I ++V
Sbjct: 1739 MEKAAFEDLKSKGLIPADATFAGHSLGEYAAL---------ASLADVMS----IESLVEV 1785
Query: 219 VRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPG-----IAELPPRPLLERLA 273
V R + V+V PR ++ ++PG ++ + ++ER+
Sbjct: 1786 VF--------YRGMTMQVAV---PRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVG 1834
Query: 274 RELRHRL--VN 282
+ + VN
Sbjct: 1835 KRTGWLVEIVN 1845
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.00A {Thermus thermophilus} SCOP:
c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Length = 280
Score = 32.0 bits (73), Expect = 0.18
Identities = 24/191 (12%), Positives = 58/191 (30%), Gaps = 33/191 (17%)
Query: 52 ARNKGISFVAIDQNR---PLSDQGP----FDVVL-HKLSGMEWCKIIEDYRQKHPEVTIL 103
A G+ + + L ++ V L +S + ++
Sbjct: 20 AEALGLPYKKVYVPALPMVLGERPKELEGVTVALERCVSQSRGLAAARYLTALG--IPVV 77
Query: 104 DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEA--GLKLP 161
+ P+ I+ ++ + L+ + P+ + T ++ P
Sbjct: 78 NRPEVIEACGDKWATSV-----ALAKAG--LPQPKTALATD-----REEALRLMEAFGYP 125
Query: 162 LVAKPL-------VVDGSAKSHELFLAYDRFSLSELE-PPMLLQEFVNHGGILFKIYIIG 213
+V KP+ + + L + +QE+V G +++++G
Sbjct: 126 VVLKPVIGSWGRLLAXXXXXXXXXXXXXXKEVLGGFQHQLFYIQEYVEKPGRDIRVFVVG 185
Query: 214 -ETIKVVRRFS 223
I + R S
Sbjct: 186 ERAIAAIYRRS 196
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp
domain, carbamoylphosphate synthase subunit (split gene
in MJ); 2.00A {Exiguobacterium sibiricum}
Length = 331
Score = 31.3 bits (71), Expect = 0.32
Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 12/120 (10%)
Query: 101 TILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAG-LK 159
I+ P A + ++ +M + + R T +++ ++ AG ++
Sbjct: 101 VIVSPYAACELCFDKYTMYEYCLRQG-------IAHAR----TYATMASFEEALAAGEVQ 149
Query: 160 LPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVV 219
LP+ KP S + + + L +++QE + + Y+ + KV
Sbjct: 150 LPVFVKPRNGSASIEVRRVETVEEVEQLFSKNTDLIVQELLVGQELGVDAYVDLISGKVT 209
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM:
PF02562, ST genomics, PSI-2, protein structure
initiative; 2.35A {Corynebacterium glutamicum atcc
13032}
Length = 208
Score = 28.7 bits (65), Expect = 1.5
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 13/56 (23%)
Query: 38 KKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDY 93
+KS L+ IL + F + + DVV H+L G I++ Y
Sbjct: 165 GGQKSGLRLVRHILRGVDDVHFSELTSS---------DVVRHQLVG----HIVDAY 207
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor,
spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis
compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB:
3kga_A* 3m42_A*
Length = 299
Score = 29.2 bits (66), Expect = 1.6
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 71 QGPFDVVL---HKLSGMEW-CKIIEDYRQKHPEVTIL 103
G VL +K + ++ K+++D + EV +
Sbjct: 28 LGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELH 64
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch
repair, nucleotide-binding, DNA-binding, polymorphism,
nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens}
PDB: 2wwy_A*
Length = 591
Score = 29.2 bits (66), Expect = 1.8
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 16/68 (23%)
Query: 3 LNGEISHKEDEEDEEE--KQSGVLQ-----PERLVVGYALTSKKKKSFLQPKLEILARNK 55
LN S + + E ++ L+ PE++ K +LE +
Sbjct: 114 LNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIA---------KSKMFMSRLEKAYEAR 164
Query: 56 GISFVAID 63
+ +A+D
Sbjct: 165 RFTRIAVD 172
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation,
staurosporine, transfe; HET: STU; 2.70A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Length = 400
Score = 28.5 bits (64), Expect = 2.5
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 71 QGPFDVVL---HKLSGMEW-CKIIEDYRQKHPEVTIL 103
G VL +K + ++ K+++D + EV +
Sbjct: 72 LGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELH 108
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 3.6
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 229 KRELAKVVSVFRF--PRVSSAAASADDADLD 257
K+ L K+ + + SA A A A ++
Sbjct: 19 KQALKKLQASLKLYAD--DSAPALAIKATME 47
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane
protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Length = 133
Score = 26.7 bits (60), Expect = 4.5
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 136 VPRQMVITKDSLSI 149
+P Q V+TKDS++I
Sbjct: 23 IPPQEVLTKDSVTI 36
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH,
membrane fusion, trafficking, transmembrane, membrane
protein; 3.20A {Pyrococcus horikoshii}
Length = 188
Score = 26.8 bits (60), Expect = 7.2
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 136 VPRQMVITKDSLSI 149
VP Q ITKD++ +
Sbjct: 18 VPVQETITKDNVPV 31
>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing,
cytoplasm, hydrolase, manganese, metal-binding,
metalloprotease, protease; HET: P6G; 1.60A {Homo
sapiens}
Length = 623
Score = 27.2 bits (61), Expect = 7.2
Identities = 11/75 (14%), Positives = 26/75 (34%), Gaps = 12/75 (16%)
Query: 47 KLEILARNKGISFVAIDQN--------RPLSDQGPFDVVLHKLSGMEW----CKIIEDYR 94
K+ + R+ G + + +N RP P + +G+ W +
Sbjct: 131 KMAKVLRSAGHHLIPVKENLVDKIWTDRPERPCKPLLTLGLDYTGISWKDKVADLRLKMA 190
Query: 95 QKHPEVTILDPPDAI 109
+++ ++ D I
Sbjct: 191 ERNVMWFVVTALDEI 205
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo
sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X*
3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A*
3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Length = 336
Score = 26.9 bits (60), Expect = 7.7
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 71 QGPFDVVL---HKLSGMEW-CKIIEDYRQKHPEVTIL 103
G VL H+ +G + K++ D + EV
Sbjct: 39 LGVNGKVLECFHRRTGQKCALKLLYDSPKARQEVDHH 75
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus
horikoshii}
Length = 113
Score = 26.0 bits (58), Expect = 8.2
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 136 VPRQMVITKDSLSI 149
VP Q VI KD++ +
Sbjct: 14 VPPQEVICKDNVVV 27
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix,
helix-turn-helix, ATP binding, Zn(2+) binding,
hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43
c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Length = 523
Score = 26.7 bits (60), Expect = 9.1
Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 19/66 (28%)
Query: 3 LNGEISHKEDEEDEEEKQSGVLQ-----PERLVVGYALTSKKKKSFLQPKLEILARNKGI 57
LN + ++ E ++G ++ PERL+ +FL+ +
Sbjct: 95 LNSTQTREQQLEVMTGCRTGQIRLLYIAPERLM---------LDNFLE-----HLAHWNP 140
Query: 58 SFVAID 63
+A+D
Sbjct: 141 VLLAVD 146
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus,
methyltransferase, adoMet, structural genomics; 1.80A
{Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB:
1wxw_A 2cww_A*
Length = 382
Score = 27.0 bits (60), Expect = 9.3
Identities = 12/85 (14%), Positives = 31/85 (36%), Gaps = 7/85 (8%)
Query: 50 ILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWC-----KIIEDYRQKHP--EVTI 102
+ VA+D + + + L+ L + ++ ++ ++ +
Sbjct: 225 LHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVV 284
Query: 103 LDPPDAIKHLHNRQSMLQDVADLNL 127
LDPP K + + + ++NL
Sbjct: 285 LDPPAFAKGKKDVERAYRAYKEVNL 309
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.397
Gapped
Lambda K H
0.267 0.0818 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,568,802
Number of extensions: 283043
Number of successful extensions: 789
Number of sequences better than 10.0: 1
Number of HSP's gapped: 781
Number of HSP's successfully gapped: 35
Length of query: 289
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 196
Effective length of database: 4,105,140
Effective search space: 804607440
Effective search space used: 804607440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.6 bits)