Query 022980
Match_columns 289
No_of_seqs 224 out of 791
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 07:34:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022980.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022980hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4361 BCL2-associated athano 99.8 8.5E-22 1.8E-26 188.3 0.5 251 21-288 31-294 (344)
2 cd01813 UBP_N UBP ubiquitin pr 99.8 1.3E-18 2.8E-23 132.7 8.5 71 57-127 1-74 (74)
3 cd01812 BAG1_N Ubiquitin-like 99.7 2.6E-17 5.6E-22 122.3 8.4 71 57-127 1-71 (71)
4 cd01807 GDX_N ubiquitin-like d 99.6 7E-16 1.5E-20 116.7 8.6 72 57-128 1-73 (74)
5 PF02179 BAG: BAG domain; Int 99.6 4.7E-16 1E-20 119.2 7.4 72 162-239 2-76 (76)
6 cd01791 Ubl5 UBL5 ubiquitin-li 99.6 2E-15 4.4E-20 115.1 8.4 70 56-125 1-71 (73)
7 smart00264 BAG BAG domains, pr 99.6 1.6E-15 3.5E-20 117.4 7.4 73 161-239 4-79 (79)
8 cd01793 Fubi Fubi ubiquitin-li 99.6 3.6E-15 7.8E-20 112.9 8.0 70 57-127 1-70 (74)
9 cd01809 Scythe_N Ubiquitin-lik 99.6 5.4E-15 1.2E-19 109.7 8.6 70 57-126 1-71 (72)
10 cd01805 RAD23_N Ubiquitin-like 99.6 8.6E-15 1.9E-19 110.6 9.0 71 57-127 1-74 (77)
11 cd01804 midnolin_N Ubiquitin-l 99.6 7.7E-15 1.7E-19 112.7 8.7 70 57-127 2-72 (78)
12 cd01797 NIRF_N amino-terminal 99.6 1.6E-14 3.5E-19 111.2 8.5 72 57-128 1-75 (78)
13 PF00240 ubiquitin: Ubiquitin 99.6 1.4E-14 3.1E-19 107.1 7.9 64 64-127 4-67 (69)
14 cd01798 parkin_N amino-termina 99.6 1.3E-14 2.9E-19 108.4 7.7 67 60-126 2-69 (70)
15 cd01794 DC_UbP_C dendritic cel 99.5 2.2E-14 4.8E-19 108.3 7.4 63 64-126 7-69 (70)
16 PTZ00044 ubiquitin; Provisiona 99.5 4.2E-14 9.1E-19 106.7 8.4 71 57-127 1-72 (76)
17 cd01796 DDI1_N DNA damage indu 99.5 3.2E-14 7E-19 107.3 7.5 67 58-124 2-69 (71)
18 cd01806 Nedd8 Nebb8-like ubiq 99.5 7E-14 1.5E-18 104.7 8.7 71 57-127 1-72 (76)
19 cd01803 Ubiquitin Ubiquitin. U 99.5 6.6E-14 1.4E-18 104.9 8.3 71 57-127 1-72 (76)
20 cd01810 ISG15_repeat2 ISG15 ub 99.5 5.1E-14 1.1E-18 106.6 7.6 68 59-126 1-69 (74)
21 cd01808 hPLIC_N Ubiquitin-like 99.5 6.3E-14 1.4E-18 105.2 7.7 70 57-126 1-70 (71)
22 cd01802 AN1_N ubiquitin-like d 99.5 1.1E-13 2.4E-18 112.1 9.2 73 54-126 25-98 (103)
23 cd01792 ISG15_repeat1 ISG15 ub 99.5 1.2E-13 2.6E-18 106.2 8.4 72 57-128 3-77 (80)
24 cd01800 SF3a120_C Ubiquitin-li 99.5 1.5E-13 3.2E-18 104.8 8.3 65 63-127 5-69 (76)
25 smart00213 UBQ Ubiquitin homol 99.5 1.9E-13 4.2E-18 98.3 7.3 64 57-120 1-64 (64)
26 cd01790 Herp_N Homocysteine-re 99.4 6.9E-13 1.5E-17 103.0 8.0 69 57-125 2-77 (79)
27 cd01815 BMSC_UbP_N Ubiquitin-l 99.3 1.5E-12 3.3E-17 100.2 5.6 54 73-126 18-74 (75)
28 cd01769 UBL Ubiquitin-like dom 99.3 1.1E-11 2.3E-16 90.2 7.7 66 61-126 2-68 (69)
29 cd01799 Hoil1_N Ubiquitin-like 99.3 1.2E-11 2.6E-16 94.8 7.5 60 65-125 12-73 (75)
30 TIGR00601 rad23 UV excision re 99.3 1E-11 2.2E-16 121.0 8.7 71 57-127 1-75 (378)
31 KOG0010 Ubiquitin-like protein 99.3 7.7E-12 1.7E-16 123.9 7.8 74 55-128 14-87 (493)
32 cd01763 Sumo Small ubiquitin-r 99.2 1.4E-10 3.1E-15 90.7 10.0 74 53-126 8-82 (87)
33 cd01789 Alp11_N Ubiquitin-like 99.1 3.5E-10 7.6E-15 88.2 8.8 70 57-126 2-80 (84)
34 cd01795 USP48_C USP ubiquitin- 99.1 2.6E-10 5.6E-15 92.1 6.9 61 67-127 16-77 (107)
35 PF14560 Ubiquitin_2: Ubiquiti 99.1 3.2E-10 7E-15 88.4 7.3 72 56-127 1-83 (87)
36 KOG0005 Ubiquitin-like protein 99.1 2.2E-10 4.7E-15 84.6 4.7 68 58-125 2-70 (70)
37 KOG1872 Ubiquitin-specific pro 99.0 4.9E-10 1.1E-14 110.6 8.0 76 55-130 2-78 (473)
38 PF11976 Rad60-SLD: Ubiquitin- 99.0 2.1E-09 4.5E-14 80.2 8.2 69 57-125 1-71 (72)
39 cd01814 NTGP5 Ubiquitin-like N 99.0 7.4E-10 1.6E-14 91.1 6.0 78 57-134 7-97 (113)
40 KOG0011 Nucleotide excision re 98.8 1E-08 2.3E-13 97.6 7.1 73 57-129 1-76 (340)
41 KOG0003 Ubiquitin/60s ribosoma 98.8 2E-09 4.2E-14 88.0 0.9 68 59-126 4-71 (128)
42 KOG0004 Ubiquitin/40S ribosoma 98.7 5.2E-09 1.1E-13 90.3 3.0 69 58-126 2-71 (156)
43 cd01801 Tsc13_N Ubiquitin-like 98.5 2.3E-07 4.9E-12 70.9 5.8 52 73-124 20-74 (77)
44 cd00196 UBQ Ubiquitin-like pro 98.4 1.2E-06 2.6E-11 59.0 7.3 63 64-126 6-68 (69)
45 PLN02560 enoyl-CoA reductase 98.4 6.3E-07 1.4E-11 85.5 7.8 68 58-125 2-81 (308)
46 KOG4248 Ubiquitin-like protein 98.4 3.7E-07 8E-12 97.2 6.6 71 58-129 4-75 (1143)
47 KOG0001 Ubiquitin and ubiquiti 98.3 7.4E-06 1.6E-10 58.5 9.0 65 63-127 7-71 (75)
48 PF13881 Rad60-SLD_2: Ubiquiti 98.3 3.4E-06 7.4E-11 69.5 7.9 76 57-132 3-93 (111)
49 PF11543 UN_NPL4: Nuclear pore 98.3 1.8E-06 3.9E-11 67.1 5.7 69 56-125 4-78 (80)
50 cd01788 ElonginB Ubiquitin-lik 98.3 3.8E-06 8.3E-11 69.5 7.7 69 57-126 3-79 (119)
51 PF08817 YukD: WXG100 protein 97.8 3.3E-05 7.1E-10 59.3 5.4 69 56-124 2-78 (79)
52 PF11470 TUG-UBL1: GLUT4 regul 97.6 0.00026 5.6E-09 53.2 6.6 65 60-124 1-65 (65)
53 KOG0006 E3 ubiquitin-protein l 97.1 0.00059 1.3E-08 65.6 5.0 59 67-125 15-73 (446)
54 KOG4361 BCL2-associated athano 97.0 0.00029 6.2E-09 68.4 2.0 61 159-226 284-344 (344)
55 cd01811 OASL_repeat1 2'-5' oli 97.0 0.0032 6.9E-08 48.8 7.1 70 57-127 1-76 (80)
56 KOG3493 Ubiquitin-like protein 96.9 0.00036 7.8E-09 52.6 1.1 60 65-124 11-70 (73)
57 KOG3206 Alpha-tubulin folding 96.8 0.003 6.5E-08 57.5 6.6 74 56-129 1-83 (234)
58 PF10302 DUF2407: DUF2407 ubiq 96.8 0.0031 6.8E-08 50.8 5.5 62 57-118 3-68 (97)
59 KOG4495 RNA polymerase II tran 96.6 0.0052 1.1E-07 49.7 5.6 62 56-117 2-65 (110)
60 COG5417 Uncharacterized small 96.4 0.014 3E-07 45.2 6.6 68 58-125 8-81 (81)
61 smart00666 PB1 PB1 domain. Pho 96.2 0.023 5E-07 42.9 7.1 45 57-101 2-46 (81)
62 KOG1769 Ubiquitin-like protein 96.2 0.037 8E-07 44.9 8.4 73 54-126 18-91 (99)
63 PF00789 UBX: UBX domain; Int 95.9 0.059 1.3E-06 40.9 8.1 71 54-124 4-80 (82)
64 KOG0013 Uncharacterized conser 95.5 0.017 3.6E-07 52.8 4.3 71 56-126 147-217 (231)
65 smart00166 UBX Domain present 95.2 0.17 3.8E-06 38.5 8.5 70 55-124 3-78 (80)
66 cd06406 PB1_P67 A PB1 domain i 95.1 0.072 1.6E-06 41.7 6.0 47 57-104 3-49 (80)
67 PF00564 PB1: PB1 domain; Int 95.0 0.11 2.5E-06 39.2 7.0 47 56-102 1-48 (84)
68 cd01767 UBX UBX (ubiquitin reg 94.6 0.32 6.9E-06 36.8 8.5 68 56-125 2-75 (77)
69 cd01770 p47_UBX p47-like ubiqu 94.0 0.43 9.3E-06 36.8 8.2 67 56-122 4-75 (79)
70 cd05992 PB1 The PB1 domain is 93.9 0.18 3.9E-06 37.8 5.8 46 57-102 1-47 (81)
71 cd06407 PB1_NLP A PB1 domain i 93.7 0.26 5.7E-06 38.5 6.4 46 57-102 1-47 (82)
72 PRK06437 hypothetical protein; 93.2 0.47 1E-05 35.4 6.9 54 64-126 9-62 (67)
73 KOG4583 Membrane-associated ER 92.5 0.072 1.6E-06 51.8 2.0 64 55-118 8-76 (391)
74 PLN02799 Molybdopterin synthas 92.3 0.77 1.7E-05 34.9 7.2 66 56-126 1-77 (82)
75 PF15044 CLU_N: Mitochondrial 92.3 0.28 6E-06 37.7 4.7 59 72-130 1-61 (76)
76 cd01773 Faf1_like1_UBX Faf1 ik 92.3 1.4 3.1E-05 34.5 8.7 71 54-125 3-79 (82)
77 cd01772 SAKS1_UBX SAKS1-like U 91.9 1.5 3.3E-05 33.5 8.4 67 57-124 5-77 (79)
78 KOG1639 Steroid reductase requ 91.7 0.46 9.9E-06 44.8 6.2 68 58-125 2-77 (297)
79 cd00754 MoaD Ubiquitin domain 91.5 1.1 2.4E-05 33.3 7.2 58 64-126 14-75 (80)
80 PRK08364 sulfur carrier protei 91.3 1.4 3.1E-05 32.9 7.5 61 57-126 5-65 (70)
81 cd01774 Faf1_like2_UBX Faf1 ik 90.7 2.6 5.7E-05 32.9 8.8 68 56-124 4-82 (85)
82 cd01771 Faf1_UBX Faf1 UBX doma 90.5 2.4 5.3E-05 32.8 8.4 69 55-124 3-77 (80)
83 PF13019 Telomere_Sde2: Telome 90.1 1.5 3.2E-05 38.7 7.6 64 57-120 1-73 (162)
84 cd06408 PB1_NoxR The PB1 domai 90.1 1.4 3.1E-05 34.9 6.8 45 56-101 2-46 (86)
85 cd06396 PB1_NBR1 The PB1 domai 90.0 1.2 2.7E-05 34.9 6.3 36 57-92 1-38 (81)
86 cd06398 PB1_Joka2 The PB1 doma 89.8 1.4 3E-05 35.2 6.6 46 57-102 1-52 (91)
87 cd06410 PB1_UP2 Uncharacterize 89.4 1.5 3.2E-05 35.4 6.6 40 61-101 17-57 (97)
88 TIGR02958 sec_mycoba_snm4 secr 89.0 1.8 3.9E-05 43.7 8.3 70 57-126 3-79 (452)
89 KOG4250 TANK binding protein k 88.4 7 0.00015 41.7 12.4 68 57-126 316-385 (732)
90 cd06411 PB1_p51 The PB1 domain 88.0 1.3 2.8E-05 34.6 5.1 39 66-104 7-45 (78)
91 COG5227 SMT3 Ubiquitin-like pr 87.8 1.8 3.8E-05 35.0 5.8 69 56-124 24-93 (103)
92 PF14836 Ubiquitin_3: Ubiquiti 87.3 2.1 4.5E-05 34.2 6.0 58 66-124 14-77 (88)
93 TIGR01682 moaD molybdopterin c 86.6 4.7 0.0001 30.4 7.5 58 64-126 14-75 (80)
94 TIGR01687 moaD_arch MoaD famil 86.2 6.5 0.00014 30.1 8.3 59 64-126 14-83 (88)
95 PF12754 Blt1: Cell-cycle cont 86.1 0.22 4.9E-06 47.9 0.0 65 53-117 75-160 (309)
96 KOG0012 DNA damage inducible p 85.8 1.4 3E-05 43.5 5.2 63 64-126 11-75 (380)
97 KOG2982 Uncharacterized conser 83.8 1.3 2.9E-05 43.3 4.0 68 59-126 341-416 (418)
98 PF12436 USP7_ICP0_bdg: ICP0-b 83.2 3.4 7.5E-05 38.2 6.4 72 53-124 65-149 (249)
99 cd06397 PB1_UP1 Uncharacterize 83.0 3.7 8.1E-05 32.3 5.5 43 58-100 2-44 (82)
100 PRK01777 hypothetical protein; 82.7 9.2 0.0002 30.7 7.9 62 56-126 3-75 (95)
101 PF02017 CIDE-N: CIDE-N domain 78.8 16 0.00036 28.4 7.8 60 63-127 11-72 (78)
102 PRK06488 sulfur carrier protei 78.8 12 0.00026 27.2 6.8 58 61-126 3-60 (65)
103 cd06539 CIDE_N_A CIDE_N domain 78.7 15 0.00034 28.7 7.6 64 58-126 6-71 (78)
104 cd00565 ThiS ThiaminS ubiquiti 77.7 10 0.00022 27.6 6.2 53 69-126 8-60 (65)
105 cd01615 CIDE_N CIDE_N domain, 77.5 15 0.00033 28.6 7.3 59 63-126 11-71 (78)
106 PF14451 Ub-Mut7C: Mut7-C ubiq 76.1 7.8 0.00017 30.2 5.4 52 66-126 23-75 (81)
107 PF14453 ThiS-like: ThiS-like 76.0 6.2 0.00013 29.0 4.5 48 69-127 9-56 (57)
108 smart00266 CAD Domains present 75.7 20 0.00043 27.8 7.4 50 75-126 18-69 (74)
109 PRK11130 moaD molybdopterin sy 74.4 28 0.0006 26.4 8.0 52 70-126 19-76 (81)
110 PF10209 DUF2340: Uncharacteri 74.2 16 0.00035 30.9 7.1 55 72-126 22-107 (122)
111 PRK05659 sulfur carrier protei 74.1 18 0.0004 26.1 6.7 59 61-126 3-61 (66)
112 TIGR00244 transcriptional regu 73.6 7.5 0.00016 33.8 5.2 57 152-212 67-123 (147)
113 PRK05863 sulfur carrier protei 73.1 18 0.00039 26.5 6.5 57 62-126 4-60 (65)
114 cd06536 CIDE_N_ICAD CIDE_N dom 72.9 22 0.00049 27.9 7.2 59 63-126 11-73 (80)
115 cd06537 CIDE_N_B CIDE_N domain 72.7 27 0.00058 27.5 7.6 66 57-127 5-71 (81)
116 TIGR01683 thiS thiamine biosyn 71.4 17 0.00036 26.4 6.0 53 69-126 7-59 (64)
117 cd06538 CIDE_N_FSP27 CIDE_N do 70.4 30 0.00065 27.1 7.4 60 63-127 11-71 (79)
118 PRK06083 sulfur carrier protei 70.2 39 0.00084 26.4 8.1 63 57-126 17-79 (84)
119 cd01775 CYR1_RA Ubiquitin doma 68.6 20 0.00043 29.2 6.2 64 64-127 11-87 (97)
120 cd06404 PB1_aPKC PB1 domain is 67.5 16 0.00034 28.9 5.3 45 57-101 1-46 (83)
121 PRK06944 sulfur carrier protei 66.6 39 0.00084 24.2 7.0 58 61-126 3-60 (65)
122 PF11834 DUF3354: Domain of un 63.5 11 0.00024 28.6 3.7 48 69-125 21-69 (69)
123 PF02597 ThiS: ThiS family; I 62.7 18 0.00039 26.4 4.8 58 67-126 13-72 (77)
124 COG1327 Predicted transcriptio 61.2 21 0.00046 31.3 5.4 36 176-212 88-123 (156)
125 PF09379 FERM_N: FERM N-termin 59.1 45 0.00097 24.5 6.4 54 64-117 5-65 (80)
126 PRK05738 rplW 50S ribosomal pr 57.3 52 0.0011 26.1 6.7 58 65-125 20-78 (92)
127 COG2104 ThiS Sulfur transfer p 56.3 77 0.0017 23.9 7.2 61 59-126 3-63 (68)
128 PF10768 FliX: Class II flagel 55.1 22 0.00047 30.7 4.5 35 204-241 55-89 (139)
129 PRK07440 hypothetical protein; 52.5 96 0.0021 23.1 7.4 61 59-126 5-65 (70)
130 PF00276 Ribosomal_L23: Riboso 52.1 28 0.0006 27.5 4.4 40 66-105 21-61 (91)
131 PF14533 USP7_C2: Ubiquitin-sp 51.9 36 0.00077 30.8 5.6 52 67-120 35-94 (213)
132 cd06401 PB1_TFG The PB1 domain 51.1 73 0.0016 25.1 6.5 33 58-90 2-35 (81)
133 PRK08053 sulfur carrier protei 50.7 95 0.0021 22.6 7.2 58 62-126 4-61 (66)
134 cd06409 PB1_MUG70 The MUG70 pr 50.5 40 0.00087 26.7 5.0 50 64-127 9-61 (86)
135 PF03671 Ufm1: Ubiquitin fold 48.8 48 0.001 25.7 5.0 58 68-125 18-76 (76)
136 cd01760 RBD Ubiquitin-like dom 48.7 80 0.0017 24.0 6.3 46 58-104 3-48 (72)
137 PRK07696 sulfur carrier protei 48.6 1.1E+02 0.0023 22.6 6.9 59 61-126 3-62 (67)
138 PRK12787 fliX flagellar assemb 48.4 28 0.0006 30.1 4.1 35 204-241 53-87 (138)
139 PF14732 UAE_UbL: Ubiquitin/SU 48.0 25 0.00055 27.5 3.6 52 75-126 8-68 (87)
140 KOG2086 Protein tyrosine phosp 45.8 42 0.00091 33.5 5.4 70 52-122 303-376 (380)
141 smart00295 B41 Band 4.1 homolo 45.6 1.9E+02 0.0041 24.6 9.1 68 57-125 6-81 (207)
142 PF05008 V-SNARE: Vesicle tran 45.6 63 0.0014 24.1 5.3 38 197-239 4-41 (79)
143 cd01766 Ufm1 Urm1-like ubiquit 45.4 57 0.0012 25.5 5.0 58 69-126 19-77 (82)
144 PTZ00380 microtubule-associate 44.4 91 0.002 26.3 6.5 43 71-113 46-88 (121)
145 COG5100 NPL4 Nuclear pore prot 43.6 1.1E+02 0.0024 31.2 7.9 75 59-133 3-86 (571)
146 cd06405 PB1_Mekk2_3 The PB1 do 41.6 64 0.0014 25.3 4.7 44 57-103 1-44 (79)
147 PF08783 DWNN: DWNN domain; I 40.1 43 0.00094 25.8 3.6 41 62-102 6-49 (74)
148 PF00788 RA: Ras association ( 40.0 85 0.0018 23.4 5.3 32 67-98 18-51 (93)
149 cd01764 Urm1 Urm1-like ubuitin 39.7 1E+02 0.0022 24.4 5.9 59 66-126 17-89 (94)
150 PF08337 Plexin_cytopl: Plexin 39.4 81 0.0018 32.9 6.6 76 53-128 186-290 (539)
151 PRK08453 fliD flagellar cappin 39.3 41 0.00089 36.0 4.5 32 57-88 129-160 (673)
152 PF03658 Ub-RnfH: RnfH family 39.1 1.8E+02 0.0039 23.0 7.1 65 57-126 1-72 (84)
153 PF11620 GABP-alpha: GA-bindin 38.7 76 0.0017 25.4 4.9 58 68-125 5-62 (88)
154 KOG4572 Predicted DNA-binding 37.7 3.2E+02 0.007 30.5 10.7 76 65-140 4-83 (1424)
155 KOG2561 Adaptor protein NUB1, 37.5 12 0.00027 38.2 0.4 73 55-127 36-111 (568)
156 smart00455 RBD Raf-like Ras-bi 37.3 1.5E+02 0.0032 22.2 6.2 38 65-102 9-46 (70)
157 PRK12280 rplW 50S ribosomal pr 35.9 1.3E+02 0.0029 26.4 6.5 41 66-106 23-64 (158)
158 KOG3650 Predicted coiled-coil 34.5 63 0.0014 26.6 3.9 38 208-245 45-89 (120)
159 COG0089 RplW Ribosomal protein 34.2 80 0.0017 25.5 4.4 39 66-104 22-61 (94)
160 PRK11840 bifunctional sulfur c 33.9 1.4E+02 0.0031 29.2 6.9 59 61-126 3-61 (326)
161 cd06535 CIDE_N_CAD CIDE_N doma 33.8 2.3E+02 0.005 22.1 7.1 63 58-126 6-70 (77)
162 KOG2689 Predicted ubiquitin re 32.9 1.6E+02 0.0034 28.4 6.9 70 55-125 209-285 (290)
163 PF14533 USP7_C2: Ubiquitin-sp 32.3 47 0.001 30.0 3.2 29 66-94 133-161 (213)
164 TIGR03042 PS_II_psbQ_bact phot 28.9 3.2E+02 0.007 23.6 7.6 45 189-233 92-139 (142)
165 cd01768 RA RA (Ras-associating 27.3 2E+02 0.0043 21.5 5.6 28 65-92 12-39 (87)
166 TIGR02978 phageshock_pspC phag 27.1 1E+02 0.0023 25.8 4.2 40 158-197 82-121 (121)
167 PF05531 NPV_P10: Nucleopolyhe 26.9 1.5E+02 0.0033 23.0 4.7 25 160-184 11-35 (75)
168 PRK10697 DNA-binding transcrip 26.4 1.2E+02 0.0025 25.5 4.3 40 158-197 79-118 (118)
169 CHL00030 rpl23 ribosomal prote 25.6 1.3E+02 0.0029 24.0 4.4 40 66-105 20-60 (93)
170 PF12436 USP7_ICP0_bdg: ICP0-b 24.7 1.9E+02 0.004 26.8 5.8 44 56-99 176-223 (249)
171 COG1977 MoaD Molybdopterin con 24.1 1.6E+02 0.0035 22.5 4.5 48 75-126 27-79 (84)
172 cd01776 Rin1_RA Ubiquitin doma 24.0 2.4E+02 0.0052 22.5 5.4 46 64-109 12-62 (87)
173 PF02505 MCR_D: Methyl-coenzym 23.9 1.5E+02 0.0033 26.0 4.7 55 54-114 65-120 (153)
174 PF05377 FlaC_arch: Flagella a 23.7 3E+02 0.0065 20.2 5.7 36 160-203 14-49 (55)
175 smart00314 RA Ras association 23.6 2.3E+02 0.0049 21.4 5.3 37 57-93 5-43 (90)
176 PF09269 DUF1967: Domain of un 23.2 55 0.0012 24.5 1.7 17 108-124 46-62 (69)
177 PF09429 Wbp11: WW domain bind 23.0 97 0.0021 23.9 3.0 34 199-232 40-73 (78)
178 PF02037 SAP: SAP domain; Int 23.0 1.4E+02 0.003 19.3 3.4 27 202-232 9-35 (35)
179 cd06403 PB1_Par6 The PB1 domai 23.0 2.7E+02 0.0059 21.9 5.5 44 58-101 2-47 (80)
180 PF07929 PRiA4_ORF3: Plasmid p 22.4 1.7E+02 0.0037 25.2 4.9 61 65-125 17-96 (179)
181 PRK12765 flagellar capping pro 22.1 1.7E+02 0.0037 30.8 5.6 50 55-104 131-190 (595)
182 cd01787 GRB7_RA RA (RAS-associ 21.9 2.4E+02 0.0051 22.4 5.0 66 57-123 5-81 (85)
183 TIGR03595 Obg_CgtA_exten Obg f 21.9 71 0.0015 23.9 2.0 17 108-124 46-62 (69)
184 TIGR02609 doc_partner putative 21.9 2.2E+02 0.0048 21.4 4.8 23 106-128 14-36 (74)
185 PF00794 PI3K_rbd: PI3-kinase 21.7 4E+02 0.0088 20.9 7.3 61 54-114 14-84 (106)
186 PRK06228 F0F1 ATP synthase sub 21.6 96 0.0021 26.2 3.0 17 193-209 113-129 (131)
187 KOG4147 Uncharacterized conser 21.1 1.2E+02 0.0026 25.5 3.3 71 54-125 5-111 (127)
188 PF02192 PI3K_p85B: PI3-kinase 21.0 1.2E+02 0.0026 23.5 3.2 23 68-90 2-24 (78)
189 KOG4842 Protein involved in si 21.0 33 0.00072 32.6 0.1 71 57-127 4-98 (278)
190 KOG3483 Uncharacterized conser 20.8 2.7E+02 0.0058 22.0 5.0 58 69-126 30-88 (94)
191 PRK05841 flgE flagellar hook p 20.5 1.1E+02 0.0024 32.3 3.8 42 53-94 245-296 (603)
192 TIGR03260 met_CoM_red_D methyl 20.3 2E+02 0.0043 25.2 4.7 55 54-114 64-118 (150)
No 1
>KOG4361 consensus BCL2-associated athanogene-like proteins and related BAG family chaperone regulators [Signal transduction mechanisms]
Probab=99.82 E-value=8.5e-22 Score=188.31 Aligned_cols=251 Identities=29% Similarity=0.372 Sum_probs=203.9
Q ss_pred CccceeeCCCceeeeecCCCCCCCCCCCCCCCCCCcEEEEEEeCCeEEEEEecCCCcHH---HHHHHHHHHhCCCCCCc-
Q 022980 21 QVDWEMRPGGMLVQRRDDDNYDHQDGAAASVSGGPVIRINVARGPSQYEVHVPARSTFG---DLKKAISEKTGLDPQEQ- 96 (289)
Q Consensus 21 ~~~we~rpggmlvq~r~~~~~~~~~~~~~~~~~~~~I~V~Vk~g~~~~~V~V~a~sTvg---dLK~~I~e~TGvpp~~Q- 96 (289)
+++|+.|||||+||+|... |..-.. + +.+..++|.+.++...|.+.+.+..+++ |+++.+.+.+|+....+
T Consensus 31 ~~~~~~~Pg~~~~q~r~~p---~~~~~~-~-~~p~~~~v~~~~~~~~~~~~i~p~~~~g~~~d~a~~~~~~ag~sh~d~~ 105 (344)
T KOG4361|consen 31 GVDAAPRPGGMPVQQRPQP---QPPLSW-P-HFPFGIRVQIEYGQLGHGLAIVPQYPSGNALDLAKPLTEDAGLSHYDQE 105 (344)
T ss_pred CcccccCCCCCcCCcCCCC---CCcccc-c-ccCCCccceeeecccccccccccccccccchhhhcccccccceeecccc
Confidence 7899999999999999963 121111 1 3567899999999888999999999999 99999999999998887
Q ss_pred -EEEEcCee-cCCchhhhhcCCCCCCEEEEEeeCCCCCCCCCcCCCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 022980 97 -KVLFRGKE-KEDNEHLDVSGMKDKSKVLLLEELTNKEKKPKEVKDSPEKKHEYAKDSEEMRKALQAIAGVRAEVDKLSE 174 (289)
Q Consensus 97 -KLiykGK~-ldd~~~L~~~GVKdgskL~Lv~~~~s~e~k~~~~~~~pee~~~e~~k~~~i~ka~~aI~~i~~evd~La~ 174 (289)
+++|.+++ +|....|+.+|+++-++|.++.++.++..+ .......+...++...++.+..+.+++.+
T Consensus 106 ~k~~y~~~e~rd~~l~l~~~g~p~~sk~~~~~~~~~q~~~-----------~~~~~~~p~~~q~s~~v~~~~~~t~r~~~ 174 (344)
T KOG4361|consen 106 VKLVYVDKELRDQSLRLSSAGVPDASKINVVPDPGSQRAR-----------QLGALVAPAPTQTSKNVSDPQLETYRLIG 174 (344)
T ss_pred cccceecccccccccccccccCcccccceeccChhhcccc-----------cccccccccccccccccccccceeeeccc
Confidence 99999999 788899999999999999999887776554 11112222222333444444445566655
Q ss_pred HHH---HHHHHhcCCCCCCchhhhhhHHHHHH----HHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 022980 175 RVA---SLEVAVNGGTKVPSEELDTSAELLMK----ELLKLDGIEAEGEAKVQRKTEVRRVQKFHETLDNLKAINSNPFC 247 (289)
Q Consensus 175 ~v~---~~e~~~~~g~k~~eke~~~LsE~LM~----~LLKLD~Ie~eGdaR~~RK~~VkrVQ~~Le~LD~lk~~n~~~~~ 247 (289)
++. .++..++.+.+.....+....+.||. .||++|.+..+|++...||..++|+|.+-+..|.|++.+++.+.
T Consensus 175 ~~v~p~~~~~~~~~~~q~e~~p~~~~iq~l~~~~~e~ll~~~~~~~~~dv~~~~~~~~~r~q~~seaq~~l~~~~s~~~~ 254 (344)
T KOG4361|consen 175 QVVDPEQKELVPNGGGQPESDPLVAQIQLLMNSLSEELLLLDAILPEGDVEVPRKPAVVRKQAYSEAQDLLKALDSTSNE 254 (344)
T ss_pred cccchhhhhcccCCCCCcCCChhhhhHHHhhhhcchhhhhhcccCCCcccccccccccccccchhhhhhhhhhccccccc
Confidence 565 56667777888888889999999999 79999999999999999999999999999999999999998887
Q ss_pred CCCCceeEeeeeeeecCCCCCCCCCCCCCCCCccCCccccc
Q 022980 248 DSSNAIKVVTQWETFDSGMGSLNPPPLAPSSTTINQDWERF 288 (289)
Q Consensus 248 ~~~~~~~~~t~we~f~~~~~s~~~~~~~~~~~~~~~~we~f 288 (289)
....+..+.+ |+.+-.+.+.+.+|+..+++-+|.+.||-|
T Consensus 255 ~~~~~~~a~~-~~~~~~~~~~~~~p~~~~~~~~V~~~~~~~ 294 (344)
T KOG4361|consen 255 EQPAAPSAQP-VEVEGPEPGPLQAPPEHPSSLKVQQILEKV 294 (344)
T ss_pred ccccccccCc-hhhcCCCcCCCCCCcccCCccchhhHhhhh
Confidence 7665455555 999999999999999999999999988865
No 2
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.77 E-value=1.3e-18 Score=132.75 Aligned_cols=71 Identities=30% Similarity=0.462 Sum_probs=68.3
Q ss_pred EEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEE---cCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 57 IRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLF---RGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 57 I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiy---kGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
|+|.|||+++.|+|+|++++||++||++|++.|||||++||||| +|+.++|+.+|++|||++|++|||||+
T Consensus 1 ~~i~vk~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lmGs 74 (74)
T cd01813 1 VPVIVKWGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMMGT 74 (74)
T ss_pred CEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEEeC
Confidence 68999999999999999999999999999999999999999997 999999999999999999999999984
No 3
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.72 E-value=2.6e-17 Score=122.29 Aligned_cols=71 Identities=48% Similarity=0.883 Sum_probs=68.5
Q ss_pred EEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 57 IRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 57 I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
|+|+|+|++..++++|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|.+|||++|++|+|+++
T Consensus 1 i~i~vk~~g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~~ 71 (71)
T cd01812 1 IRVRVKHGGESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLED 71 (71)
T ss_pred CEEEEEECCEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEecC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999874
No 4
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.64 E-value=7e-16 Score=116.67 Aligned_cols=72 Identities=22% Similarity=0.369 Sum_probs=66.4
Q ss_pred EEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEeeC
Q 022980 57 IRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL 128 (289)
Q Consensus 57 I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~~ 128 (289)
|+|+|+. +|..+.++|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+..+
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 4677774 67889999999999999999999999999999999999999999999999999999999998643
No 5
>PF02179 BAG: BAG domain; InterPro: IPR003103 BAG domains are present in Bcl-2-associated athanogene 1 and silencer of death domains. The BAG proteins are modulators of chaperone activity, they bind to HSP70/HSC70 proteins and promote substrate release. The proteins have anti-apoptotic activity and increase the anti-cell death function of BCL-2 induced by various stimuli. BAG-1 binds to the serine/threonine kinase Raf-1 or Hsc70/Hsp70 in a mutually exclusive interaction. BAG-1 promotes cell growth by binding to and stimulating Raf-1 activity. The binding of Hsp70 to BAG-1 diminishes Raf-1 signalling and inhibits subsequent events, such as DNA synthesis, as well as arrests the cell cycle. BAG-1 has been suggested to function as a molecular switch that encourages cells to proliferate in normal conditions but become quiescent under a stressful environment []. BAG-family proteins contain a single BAG domain, except for human BAG-5 which has four BAG repeats. The BAG domain is a conserved region located at the C terminus of the BAG-family proteins that binds the ATPase domain of Hsc70/Hsp70. The BAG domain is evolutionarily conserved, and BAG domain containing proteins have been described and/or proven in a variety of organisms including Mus musculus (Mouse), Xenopus spp., Drosophila spp., Bombyx mori (Silk moth), Caenorhabditis elegans, Saccharomyces cerevisiae (Baker's yeast), Schizosaccharomyces pombe (Fission yeast), and Arabidopsis thaliana (Mouse-ear cress). The BAG domain has 110-124 amino acids and is comprised of three anti-parallel alpha-helices, each approximately 30-40 amino acids in length. The first and second helices interact with the serine/threonine kinase Raf-1 and the second and third helices are the sites of the BAG domain interaction with the ATPase domain of Hsc70/Hsp70. Binding of the BAG domain to the ATPase domain is mediated by both electrostatic and hydrophobic interactions in BAG-1 and is energy requiring.; GO: 0051087 chaperone binding; PDB: 1M7K_A 1M62_A 1T7S_A 1UGO_A 1I6Z_A 3A8Y_C 1UK5_A 3FZM_B 3FZL_B 3M3Z_B ....
Probab=99.64 E-value=4.7e-16 Score=119.15 Aligned_cols=72 Identities=42% Similarity=0.595 Sum_probs=66.2
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHhcCCCCCCchhhhhhHHHHHHHHHhhcCCCCch--hHHHHHHHHHHHHHHHHHHHHHH
Q 022980 162 IAGVRAEVDK-LSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIEAEG--EAKVQRKTEVRRVQKFHETLDNL 238 (289)
Q Consensus 162 I~~i~~evd~-La~~v~~~e~~~~~g~k~~eke~~~LsE~LM~~LLKLD~Ie~eG--daR~~RK~~VkrVQ~~Le~LD~l 238 (289)
|..+..+|+. |.+++..| +++..+++|.+|+|+||+.|++||+|+++| ++|.+||.+|++||++|+.||.+
T Consensus 2 I~~i~~~v~~~l~~~v~~~------~~~~~~~~~~~l~E~L~~~LlkLD~I~~~g~~~iR~~RK~~v~~iq~~l~~lD~~ 75 (76)
T PF02179_consen 2 IEKIIDEVEKELQPEVEQF------DGKKDEKEYLRLSEMLMQLLLKLDSIETEGNPEIREKRKQAVKRIQQLLDKLDSL 75 (76)
T ss_dssp HHHHHHHHHHCHHHHHHHH------HHHHCCHHHHHHHHHHHHHHHHHHTCECSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH------hccCcHHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 6677788888 88888888 677889999999999999999999999998 99999999999999999999998
Q ss_pred H
Q 022980 239 K 239 (289)
Q Consensus 239 k 239 (289)
|
T Consensus 76 k 76 (76)
T PF02179_consen 76 K 76 (76)
T ss_dssp H
T ss_pred C
Confidence 6
No 6
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.61 E-value=2e-15 Score=115.07 Aligned_cols=70 Identities=23% Similarity=0.223 Sum_probs=66.0
Q ss_pred cEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEE
Q 022980 56 VIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLL 125 (289)
Q Consensus 56 ~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv 125 (289)
+|.|+|+. .|+.+.++|++++||++||++|++..|+|+++|||+|+|+.++|+.+|.+|||++|++|+|-
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEE
Confidence 57899997 47899999999999999999999999999999999999999999999999999999999984
No 7
>smart00264 BAG BAG domains, present in regulator of Hsp70 proteins. BAG domains, present in Bcl-2-associated athanogene 1 and silencer of death domains
Probab=99.61 E-value=1.6e-15 Score=117.42 Aligned_cols=73 Identities=37% Similarity=0.446 Sum_probs=62.0
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHhcCCCCCCchhhhhhHHHHHHHHHhhcCCCCch--hHHHHHHHHHHHHHHHHHHHHH
Q 022980 161 AIAGVRAEV-DKLSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIEAEG--EAKVQRKTEVRRVQKFHETLDN 237 (289)
Q Consensus 161 aI~~i~~ev-d~La~~v~~~e~~~~~g~k~~eke~~~LsE~LM~~LLKLD~Ie~eG--daR~~RK~~VkrVQ~~Le~LD~ 237 (289)
.|..+..+| ..+..++..| .+++.+++|.+|+|+||++|++||+|+++| ++|.+||.+|++||++++.||.
T Consensus 4 ~v~~~~~ev~~~l~~~v~~~------~~~~~~~~~~~l~E~l~~~LlkLD~i~~~g~~~~R~~RK~~v~~iq~~l~~lD~ 77 (79)
T smart00264 4 KINRVLDEVVKKIEKEVQVA------DGKKDDKEYLRLSEELMKLLLKLDSVDVEGCPDIREARKRLVRLIQNLLNALDS 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHhh------cchhHHHHHHHHHHHHHHHHHHHcCcCcCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555555 4666666665 578999999999999999999999999999 9999999999999999999997
Q ss_pred HH
Q 022980 238 LK 239 (289)
Q Consensus 238 lk 239 (289)
++
T Consensus 78 ~~ 79 (79)
T smart00264 78 KK 79 (79)
T ss_pred cC
Confidence 63
No 8
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.59 E-value=3.6e-15 Score=112.87 Aligned_cols=70 Identities=20% Similarity=0.357 Sum_probs=65.4
Q ss_pred EEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 57 IRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 57 I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
|+|+|+.+ .++.++|++.+||++||++|++.+|+|+++|+|+|.|+.++|+.+|++|||+++++|+|+-.
T Consensus 1 mqi~vk~~-~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~ 70 (74)
T cd01793 1 MQLFVRAQ-NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGR 70 (74)
T ss_pred CEEEEECC-CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEe
Confidence 57888875 68999999999999999999999999999999999999999999999999999999999753
No 9
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.59 E-value=5.4e-15 Score=109.74 Aligned_cols=70 Identities=26% Similarity=0.423 Sum_probs=65.3
Q ss_pred EEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 57 IRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 57 I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
|+|+|++ .|..+++.+++..||++||++|++.+|+|+.+|+|+|+|+.++|+.+|++|||++|++|+|+.
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~ 71 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVK 71 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEe
Confidence 5788886 467899999999999999999999999999999999999999999999999999999999874
No 10
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.58 E-value=8.6e-15 Score=110.64 Aligned_cols=71 Identities=24% Similarity=0.479 Sum_probs=65.6
Q ss_pred EEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCC--CCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 57 IRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGL--DPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 57 I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGv--pp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
|.|+|+. +|..|.++|++++||++||++|++.+|+ |+++|+|+|+|+.++|+.+|++|||++|++|+|+..
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~ 74 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVS 74 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEe
Confidence 4677775 6788999999999999999999999999 999999999999999999999999999999998864
No 11
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.58 E-value=7.7e-15 Score=112.69 Aligned_cols=70 Identities=24% Similarity=0.408 Sum_probs=64.9
Q ss_pred EEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 57 IRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 57 I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
|+|+|+. .|..++|+|++.+||++||+.|++.+|+++++|||+|+|+.++|+ +|.+|||++|++|+|+..
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~ 72 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPT 72 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEee
Confidence 6788886 467899999999999999999999999999999999999999888 999999999999999864
No 12
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.55 E-value=1.6e-14 Score=111.24 Aligned_cols=72 Identities=22% Similarity=0.329 Sum_probs=64.0
Q ss_pred EEEEEEe-CCeE-EEEE-ecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEeeC
Q 022980 57 IRINVAR-GPSQ-YEVH-VPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL 128 (289)
Q Consensus 57 I~V~Vk~-g~~~-~~V~-V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~~ 128 (289)
|.|+|+. .|.. +.++ +.+..||++||++|++.+|+|+++|||+|+||.++|+.+|++|||++|++|+|+-..
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~ 75 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQ 75 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEec
Confidence 4677775 3444 6885 889999999999999999999999999999999999999999999999999998654
No 13
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.55 E-value=1.4e-14 Score=107.07 Aligned_cols=64 Identities=33% Similarity=0.616 Sum_probs=61.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 64 GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 64 g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
.|..|.++|++++||++||++|++.+|+|++.|+|+|+|+.++|+.+|.+|||++|++|+|+.+
T Consensus 4 ~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k 67 (69)
T PF00240_consen 4 SGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIK 67 (69)
T ss_dssp TSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEES
T ss_pred CCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEe
Confidence 4678999999999999999999999999999999999999999999999999999999999864
No 14
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.55 E-value=1.3e-14 Score=108.40 Aligned_cols=67 Identities=19% Similarity=0.404 Sum_probs=62.3
Q ss_pred EEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 60 NVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 60 ~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
+|+. .|..+.++|++++||++||++|++.+|+|+.+|+|+|+|+.++|+.+|++|||++||+|+|+.
T Consensus 2 ~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~ 69 (70)
T cd01798 2 YVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVR 69 (70)
T ss_pred EEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 4553 567899999999999999999999999999999999999999999999999999999999975
No 15
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.53 E-value=2.2e-14 Score=108.33 Aligned_cols=63 Identities=25% Similarity=0.413 Sum_probs=60.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 64 GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 64 g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
+|.+++++|++.+||++||++|++..|+|+++|+|+|+|+.++|+.+|.+|||++|++|+|+-
T Consensus 7 ~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 7 TGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred CCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 467899999999999999999999999999999999999999999999999999999999873
No 16
>PTZ00044 ubiquitin; Provisional
Probab=99.52 E-value=4.2e-14 Score=106.74 Aligned_cols=71 Identities=18% Similarity=0.327 Sum_probs=65.9
Q ss_pred EEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 57 IRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 57 I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
|.|+|+. .|..+.+.|.+++||++||++|++.+|+|++.|+|+|.|+.++|+.+|++|||++|++|+|+-.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~ 72 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQ 72 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEE
Confidence 4677885 6788999999999999999999999999999999999999999999999999999999999854
No 17
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.52 E-value=3.2e-14 Score=107.27 Aligned_cols=67 Identities=24% Similarity=0.469 Sum_probs=60.2
Q ss_pred EEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCc-hhhhhcCCCCCCEEEE
Q 022980 58 RINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDN-EHLDVSGMKDKSKVLL 124 (289)
Q Consensus 58 ~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~-~~L~~~GVKdgskL~L 124 (289)
+|+...++..+.++|++.+||++||++|++.+|+|+++|+|+|+|+.++|+ .+|++|||++|++|+|
T Consensus 2 ~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l 69 (71)
T cd01796 2 TVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVL 69 (71)
T ss_pred EEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEE
Confidence 444443567899999999999999999999999999999999999998776 6899999999999987
No 18
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.51 E-value=7e-14 Score=104.75 Aligned_cols=71 Identities=21% Similarity=0.404 Sum_probs=65.4
Q ss_pred EEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 57 IRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 57 I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
|+|+|+. +|..+.++|++..||++||++|++.+|+|+.+|+|+|.|+.++|+.+|.+|||++|+.|+|+-.
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~ 72 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLA 72 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEE
Confidence 4677775 5788999999999999999999999999999999999999999999999999999999999853
No 19
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.51 E-value=6.6e-14 Score=104.89 Aligned_cols=71 Identities=25% Similarity=0.442 Sum_probs=65.7
Q ss_pred EEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 57 IRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 57 I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
|.|+|+. +|+.+.++|++.+||++||++|++.+|+|+++|+|+|+|+.++|+.+|.+|||++|++|+|+-.
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEE
Confidence 4677885 5788999999999999999999999999999999999999999999999999999999999854
No 20
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.51 E-value=5.1e-14 Score=106.56 Aligned_cols=68 Identities=22% Similarity=0.269 Sum_probs=62.5
Q ss_pred EEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 59 INVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 59 V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
|+|+. .++++.++|.+.+||++||++|++.+|+|+++|+|+|+|+.++|+.+|++|||+++++|+|+-
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~ 69 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNL 69 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 34553 467899999999999999999999999999999999999999999999999999999999875
No 21
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.50 E-value=6.3e-14 Score=105.15 Aligned_cols=70 Identities=24% Similarity=0.393 Sum_probs=62.5
Q ss_pred EEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 57 IRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 57 I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
|+|+|+.....+.++|++++||++||+.|++.+|+++++|+|+|+|+.++|+.+|.+|||++|++|+|+-
T Consensus 1 ~~i~vk~~~g~~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~ 70 (71)
T cd01808 1 IKVTVKTPKDKEEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVI 70 (71)
T ss_pred CEEEEEcCCCCEEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEE
Confidence 4577775333468999999999999999999999999999999999999999999999999999999873
No 22
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.49 E-value=1.1e-13 Score=112.10 Aligned_cols=73 Identities=16% Similarity=0.227 Sum_probs=68.4
Q ss_pred CCcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 54 GPVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 54 ~~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
.+.|.|+|+. +|..+.++|.+.+||++||++|++..|+|+++|+|+|.|+.++|+.+|++|||++|++|+|+-
T Consensus 25 ~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL~l~~ 98 (103)
T cd01802 25 YDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNISEGCTLKLVL 98 (103)
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 3569999996 678899999999999999999999999999999999999999999999999999999999875
No 23
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.49 E-value=1.2e-13 Score=106.25 Aligned_cols=72 Identities=25% Similarity=0.331 Sum_probs=66.7
Q ss_pred EEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEE--EEcCeecCCchhhhhcCCCCCCEEEEEeeC
Q 022980 57 IRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKV--LFRGKEKEDNEHLDVSGMKDKSKVLLLEEL 128 (289)
Q Consensus 57 I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKL--iykGK~ldd~~~L~~~GVKdgskL~Lv~~~ 128 (289)
|.|+|+. .|+.+.++|++.+||++||++|++.+|+|+++||| +|+|+.++|+.+|++|||++|++|+|+..+
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~ 77 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQN 77 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence 7788886 57889999999999999999999999999999999 999999999999999999999999998754
No 24
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.48 E-value=1.5e-13 Score=104.79 Aligned_cols=65 Identities=18% Similarity=0.227 Sum_probs=61.8
Q ss_pred eCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 63 RGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 63 ~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
-+++.++++|++.+||++||++|+..+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+..
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~ 69 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLK 69 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEe
Confidence 36889999999999999999999999999999999999999999999999999999999999864
No 25
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.46 E-value=1.9e-13 Score=98.28 Aligned_cols=64 Identities=28% Similarity=0.454 Sum_probs=60.0
Q ss_pred EEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCC
Q 022980 57 IRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKS 120 (289)
Q Consensus 57 I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgs 120 (289)
|+|+|++.+..+.+.|+++.||++||++|+..+|+|+.+|+|+|+|+.++|+.+|.+|||++|+
T Consensus 1 ~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLDGTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECCceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 5788998667899999999999999999999999999999999999999999999999999986
No 26
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.41 E-value=6.9e-13 Score=102.98 Aligned_cols=69 Identities=20% Similarity=0.188 Sum_probs=60.4
Q ss_pred EEEEEEe-CCeE--EEEEecCCCcHHHHHHHHHHHhC--CCCCCcEEEEcCeecCCchhhhhcC--CCCCCEEEEE
Q 022980 57 IRINVAR-GPSQ--YEVHVPARSTFGDLKKAISEKTG--LDPQEQKVLFRGKEKEDNEHLDVSG--MKDKSKVLLL 125 (289)
Q Consensus 57 I~V~Vk~-g~~~--~~V~V~a~sTvgdLK~~I~e~TG--vpp~~QKLiykGK~ldd~~~L~~~G--VKdgskL~Lv 125 (289)
|+|+||. .+.+ +.|++++.+||++||++|++..+ .++++|||||+||.++|+.+|.+|+ +++|.+|+|+
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV 77 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLV 77 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEE
Confidence 7889997 4566 45555899999999999999875 4579999999999999999999997 9999999997
No 27
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.34 E-value=1.5e-12 Score=100.16 Aligned_cols=54 Identities=24% Similarity=0.465 Sum_probs=49.8
Q ss_pred cCCCcHHHHHHHHHHHh--CCC-CCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 73 PARSTFGDLKKAISEKT--GLD-PQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 73 ~a~sTvgdLK~~I~e~T--Gvp-p~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
|..+||++||++|++.+ |++ +++|||||.||.++|+.+|.+|||++|++|+|+.
T Consensus 18 ~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 18 PGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred CccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 46679999999999997 475 8999999999999999999999999999999985
No 28
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.29 E-value=1.1e-11 Score=90.23 Aligned_cols=66 Identities=29% Similarity=0.516 Sum_probs=61.0
Q ss_pred EEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 61 VAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 61 Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
|++ .+..+.+.+++++|+++||++|+..+|+|+.+|+|+|+|+.++|+.+|.+|||++|+.|+++.
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 444 367889999999999999999999999999999999999999999999999999999999875
No 29
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.28 E-value=1.2e-11 Score=94.75 Aligned_cols=60 Identities=22% Similarity=0.297 Sum_probs=55.3
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeec-CCchhhhhcCCC-CCCEEEEE
Q 022980 65 PSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEK-EDNEHLDVSGMK-DKSKVLLL 125 (289)
Q Consensus 65 ~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~l-dd~~~L~~~GVK-dgskL~Lv 125 (289)
+.++.+.|++..||++||.+|++.+|+||++|+| |.|+.+ +|..+|.+|||+ +|+.|+|-
T Consensus 12 ~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~ 73 (75)
T cd01799 12 TVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLY 73 (75)
T ss_pred CCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEE
Confidence 4678899999999999999999999999999999 999996 577999999999 88999874
No 30
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.27 E-value=1e-11 Score=121.01 Aligned_cols=71 Identities=18% Similarity=0.385 Sum_probs=65.8
Q ss_pred EEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhC---CCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 57 IRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTG---LDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 57 I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TG---vpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
|+|+||. .+++|.|+|.+++||++||++|+..+| +++++|||||+||.++|+.+|.+|||++|+.|+||..
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~ 75 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVS 75 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEec
Confidence 5788885 678899999999999999999999999 9999999999999999999999999999999988854
No 31
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.27 E-value=7.7e-12 Score=123.88 Aligned_cols=74 Identities=27% Similarity=0.483 Sum_probs=70.8
Q ss_pred CcEEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEeeC
Q 022980 55 PVIRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL 128 (289)
Q Consensus 55 ~~I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~~ 128 (289)
..|+|+||+.+.+|.|.|+.++||.+||+.|+..+++++++|+|||.||.++|.++|..|||+||.+||||.+.
T Consensus 14 ~~irV~Vkt~~dk~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~ 87 (493)
T KOG0010|consen 14 SLIRVTVKTPKDKYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKS 87 (493)
T ss_pred ceeEEEEecCCcceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEecc
Confidence 56999999988899999999999999999999999999999999999999999999999999999999999753
No 32
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.20 E-value=1.4e-10 Score=90.74 Aligned_cols=74 Identities=20% Similarity=0.317 Sum_probs=68.5
Q ss_pred CCCcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 53 GGPVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 53 ~~~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
....|+|.|+. .+..+.+.|.+++||..|+..+++..|+|+++|+|+|.|+.++++.++.+||+.+||.|.++.
T Consensus 8 ~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l 82 (87)
T cd01763 8 ISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVML 82 (87)
T ss_pred CCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEE
Confidence 45679999987 367788999999999999999999999999999999999999999999999999999998874
No 33
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=99.12 E-value=3.5e-10 Score=88.20 Aligned_cols=70 Identities=19% Similarity=0.394 Sum_probs=59.6
Q ss_pred EEEEEEeC--CeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEE-EEcCe-----e-cCCchhhhhcCCCCCCEEEEEe
Q 022980 57 IRINVARG--PSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKV-LFRGK-----E-KEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 57 I~V~Vk~g--~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKL-iykGK-----~-ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
++|.|++. ....+..+|...||++||.+|+..||++|..|+| +|.|+ . .+|..+|..||++||++|+++.
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD 80 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID 80 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence 45666654 4445666999999999999999999999999999 58888 3 4788899999999999999985
No 34
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.09 E-value=2.6e-10 Score=92.05 Aligned_cols=61 Identities=26% Similarity=0.353 Sum_probs=56.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCee-cCCchhhhhcCCCCCCEEEEEee
Q 022980 67 QYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKE-KEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 67 ~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~-ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
...+.|++++||++||.+|.+.+||+|.+|+|+|.|+. -||..+|++|||-.||.|+|+.+
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llid 77 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKAD 77 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEec
Confidence 35678999999999999999999999999999999998 57889999999999999999863
No 35
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=99.08 E-value=3.2e-10 Score=88.36 Aligned_cols=72 Identities=21% Similarity=0.475 Sum_probs=60.7
Q ss_pred cEEEEEEeCCe---EEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEc----Cee----cCCchhhhhcCCCCCCEEEE
Q 022980 56 VIRINVARGPS---QYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFR----GKE----KEDNEHLDVSGMKDKSKVLL 124 (289)
Q Consensus 56 ~I~V~Vk~g~~---~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiyk----GK~----ldd~~~L~~~GVKdgskL~L 124 (289)
+|.|.|.+... .++..+|...||++||.+|+..||+||..|+|.|. |.. .+|..+|..||++||++|++
T Consensus 1 ~v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V 80 (87)
T PF14560_consen 1 VVKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHV 80 (87)
T ss_dssp EEEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEE
T ss_pred CEEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEE
Confidence 47889998655 88999999999999999999999999999999887 111 47789999999999999998
Q ss_pred Eee
Q 022980 125 LEE 127 (289)
Q Consensus 125 v~~ 127 (289)
+..
T Consensus 81 ~D~ 83 (87)
T PF14560_consen 81 VDT 83 (87)
T ss_dssp EE-
T ss_pred EeC
Confidence 853
No 36
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=2.2e-10 Score=84.56 Aligned_cols=68 Identities=22% Similarity=0.416 Sum_probs=62.6
Q ss_pred EEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEE
Q 022980 58 RINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLL 125 (289)
Q Consensus 58 ~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv 125 (289)
.|.|+. .++..+|+|.+.++|..+|+.+++..||||.+|||||.||+..|+.+-..|++.-||.|+|+
T Consensus 2 ~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred eeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 466665 45789999999999999999999999999999999999999999999999999999999975
No 37
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=4.9e-10 Score=110.64 Aligned_cols=76 Identities=22% Similarity=0.349 Sum_probs=70.7
Q ss_pred CcEEEEEEeCCeEEEEE-ecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEeeCCC
Q 022980 55 PVIRINVARGPSQYEVH-VPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELTN 130 (289)
Q Consensus 55 ~~I~V~Vk~g~~~~~V~-V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~~~s 130 (289)
+...|.|||+|+.|++. +..++|...||++|...|||+|++|||+++|+.+.|+--+..++||+|.+|||||++..
T Consensus 2 ~~~~v~VKW~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~e~ 78 (473)
T KOG1872|consen 2 PSDTVIVKWGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTAEA 78 (473)
T ss_pred CcceEeeeecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeeccccc
Confidence 45789999999999988 99999999999999999999999999999999988777889999999999999997654
No 38
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=98.99 E-value=2.1e-09 Score=80.24 Aligned_cols=69 Identities=23% Similarity=0.435 Sum_probs=62.3
Q ss_pred EEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCC-CCcEEEEcCeecCCchhhhhcCCCCCCEEEEE
Q 022980 57 IRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDP-QEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLL 125 (289)
Q Consensus 57 I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp-~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv 125 (289)
|+|+|+. +++.+.+.|.++.+|+.|.+.+++..|+++ +.++|+|.|+.++++.++.+||+++|+.|.++
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~ 71 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVI 71 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEE
Confidence 6777776 567899999999999999999999999999 99999999999999999999999999999875
No 39
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=98.99 E-value=7.4e-10 Score=91.14 Aligned_cols=78 Identities=19% Similarity=0.167 Sum_probs=63.7
Q ss_pred EEEEEEeCCeEEEEEecCCCcHHHHHHHHHH-----HhCCC--CCCcEEEEcCeecCCchhhhhcC------CCCCCEEE
Q 022980 57 IRINVARGPSQYEVHVPARSTFGDLKKAISE-----KTGLD--PQEQKVLFRGKEKEDNEHLDVSG------MKDKSKVL 123 (289)
Q Consensus 57 I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e-----~TGvp--p~~QKLiykGK~ldd~~~L~~~G------VKdgskL~ 123 (289)
|+++...|...=+..+++++||++||+.|++ ..|+| +++|||||.||.|+|+.+|.+|+ +....+++
T Consensus 7 ~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~TmH 86 (113)
T cd01814 7 IKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVITMH 86 (113)
T ss_pred EEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceEEE
Confidence 4444444666678899999999999999994 45566 99999999999999999999999 77789999
Q ss_pred EEeeCCCCCCC
Q 022980 124 LLEELTNKEKK 134 (289)
Q Consensus 124 Lv~~~~s~e~k 134 (289)
|+-.+...+.+
T Consensus 87 vvlr~~~~~~~ 97 (113)
T cd01814 87 VVVQPPLADKK 97 (113)
T ss_pred EEecCCCCCcc
Confidence 99766654443
No 40
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=98.79 E-value=1e-08 Score=97.63 Aligned_cols=73 Identities=19% Similarity=0.383 Sum_probs=66.8
Q ss_pred EEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhC--CCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEeeCC
Q 022980 57 IRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTG--LDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELT 129 (289)
Q Consensus 57 I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TG--vpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~~~ 129 (289)
|+|+||. .+.+++|++.+..||.+||+.|+...| .|...|||||.||.+.|+.++..|+|++++-|.||.++.
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~ 76 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD 76 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence 5788886 568899999999999999999999999 899999999999999999999999999999988886443
No 41
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=2e-09 Score=87.99 Aligned_cols=68 Identities=24% Similarity=0.401 Sum_probs=62.8
Q ss_pred EEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 59 INVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 59 V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
+.+..-|++..+++.+.+||..||..|....||||+.|+|+|.||.++|..+|..||++.-|+|+++-
T Consensus 4 ~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~ 71 (128)
T KOG0003|consen 4 FVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (128)
T ss_pred EEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhH
Confidence 33445678999999999999999999999999999999999999999999999999999999999874
No 42
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=5.2e-09 Score=90.25 Aligned_cols=69 Identities=28% Similarity=0.442 Sum_probs=62.9
Q ss_pred EEEEEeC-CeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 58 RINVARG-PSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 58 ~V~Vk~g-~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
.|+|++- +.+...++.+.+|+..+|+.|++..||||++|+|||-|+.|+|..+|++|+|+..++|+|+-
T Consensus 2 ~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l 71 (156)
T KOG0004|consen 2 QIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71 (156)
T ss_pred ccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEE
Confidence 4667763 45788999999999999999999999999999999999999999999999999999998883
No 43
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.50 E-value=2.3e-07 Score=70.88 Aligned_cols=52 Identities=25% Similarity=0.357 Sum_probs=46.7
Q ss_pred cCCCcHHHHHHHHHHHhC-CCCCCcEEE--EcCeecCCchhhhhcCCCCCCEEEE
Q 022980 73 PARSTFGDLKKAISEKTG-LDPQEQKVL--FRGKEKEDNEHLDVSGMKDKSKVLL 124 (289)
Q Consensus 73 ~a~sTvgdLK~~I~e~TG-vpp~~QKLi--ykGK~ldd~~~L~~~GVKdgskL~L 124 (289)
++++||++||..|+...+ +++.+|+|. |+|+.+.|+.+|.+|||++|++|++
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 688899999999999986 478999985 8899988889999999999999875
No 44
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.43 E-value=1.2e-06 Score=59.00 Aligned_cols=63 Identities=32% Similarity=0.545 Sum_probs=57.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 64 GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 64 g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
++....+.+++..|+++|++.|+..+|+++..|+|++.|..+++...+..+++.+++.|+++.
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 467788999999999999999999999999999999999998888888899999999999874
No 45
>PLN02560 enoyl-CoA reductase
Probab=98.42 E-value=6.3e-07 Score=85.53 Aligned_cols=68 Identities=28% Similarity=0.452 Sum_probs=55.8
Q ss_pred EEEEEe-CCeEE---EEEecCCCcHHHHHHHHHHHhCC-CCCCcEEEEc---Ce----ecCCchhhhhcCCCCCCEEEEE
Q 022980 58 RINVAR-GPSQY---EVHVPARSTFGDLKKAISEKTGL-DPQEQKVLFR---GK----EKEDNEHLDVSGMKDKSKVLLL 125 (289)
Q Consensus 58 ~V~Vk~-g~~~~---~V~V~a~sTvgdLK~~I~e~TGv-pp~~QKLiyk---GK----~ldd~~~L~~~GVKdgskL~Lv 125 (289)
.|+|+- +|+.+ .|++++++||+|||+.|++..++ ++++|||+|. |+ .++|+.+|.++||++|++|++-
T Consensus 2 ~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~k 81 (308)
T PLN02560 2 KVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVFK 81 (308)
T ss_pred EEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEEE
Confidence 345553 23444 79999999999999999999997 8999999983 43 5788899999999999998865
No 46
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=3.7e-07 Score=97.21 Aligned_cols=71 Identities=15% Similarity=0.317 Sum_probs=66.3
Q ss_pred EEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEeeCC
Q 022980 58 RINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELT 129 (289)
Q Consensus 58 ~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~~~ 129 (289)
.|+||. ....+++.|..++||.+||..|...+.|+.+.|||||.|++|.|++.+.+||| ||-.|+|++.+.
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverpp 75 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPP 75 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCC
Confidence 478886 56789999999999999999999999999999999999999999999999999 999999998754
No 47
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.28 E-value=7.4e-06 Score=58.52 Aligned_cols=65 Identities=23% Similarity=0.348 Sum_probs=60.5
Q ss_pred eCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 63 RGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 63 ~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
..++.+.+.+.+..+|..+|.+|+...|+++..|.|+|.|+.+.|..+|..|+|..++.+.|...
T Consensus 7 ~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~ 71 (75)
T KOG0001|consen 7 LDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLS 71 (75)
T ss_pred cCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEe
Confidence 45678899999999999999999999999999999999999999999999999999999998764
No 48
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.27 E-value=3.4e-06 Score=69.47 Aligned_cols=76 Identities=20% Similarity=0.280 Sum_probs=53.5
Q ss_pred EEEEEEe--CCeEEEEEecCCCcHHHHHHHHHHHh--C-----CCCCCcEEEEcCeecCCchhhhhcCCCCCC------E
Q 022980 57 IRINVAR--GPSQYEVHVPARSTFGDLKKAISEKT--G-----LDPQEQKVLFRGKEKEDNEHLDVSGMKDKS------K 121 (289)
Q Consensus 57 I~V~Vk~--g~~~~~V~V~a~sTvgdLK~~I~e~T--G-----vpp~~QKLiykGK~ldd~~~L~~~GVKdgs------k 121 (289)
|.|++.. |....++.+++.+||++||+.|...- + ..+..+||||.||.|+|+.+|.++++.-|+ .
T Consensus 3 i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~v 82 (111)
T PF13881_consen 3 IELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTV 82 (111)
T ss_dssp EEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EE
T ss_pred EEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEE
Confidence 4444443 44489999999999999999998631 1 124689999999999999999999999887 4
Q ss_pred EEEEeeCCCCC
Q 022980 122 VLLLEELTNKE 132 (289)
Q Consensus 122 L~Lv~~~~s~e 132 (289)
+||+-.+...+
T Consensus 83 mHlvvrp~~~~ 93 (111)
T PF13881_consen 83 MHLVVRPNAPE 93 (111)
T ss_dssp EEEEE-SSSSS
T ss_pred EEEEecCCCCC
Confidence 67776555433
No 49
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.26 E-value=1.8e-06 Score=67.09 Aligned_cols=69 Identities=25% Similarity=0.348 Sum_probs=43.1
Q ss_pred cEEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCe----ec--CCchhhhhcCCCCCCEEEEE
Q 022980 56 VIRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGK----EK--EDNEHLDVSGMKDKSKVLLL 125 (289)
Q Consensus 56 ~I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK----~l--dd~~~L~~~GVKdgskL~Lv 125 (289)
.|.|+|......+.|++++.+|+++|++.|.+.+++++..|.| |..+ .+ .+..+|+++||++||-|+|-
T Consensus 4 ~milRvrS~dG~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L-~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 4 SMILRVRSKDGMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSL-SKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp --EEEEE-SSEEEEEEE-TTSBHHHHHHHHHHHS---TTT----BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred cEEEEEECCCCCEEEEcCCcccHHHHHHHHHHHcCCCCcceEE-EecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 4777887766688899999999999999999999999998877 4432 23 56889999999999999873
No 50
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.26 E-value=3.8e-06 Score=69.48 Aligned_cols=69 Identities=16% Similarity=0.240 Sum_probs=61.0
Q ss_pred EEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCee-cCCchhhhhcCC-------CCCCEEEEEe
Q 022980 57 IRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKE-KEDNEHLDVSGM-------KDKSKVLLLE 126 (289)
Q Consensus 57 I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~-ldd~~~L~~~GV-------KdgskL~Lv~ 126 (289)
+.+.|+....+|-++.-.++||-+||+.|+..+..||+.|+|+ ++-. ++|+.+|.+||+ ..-+.|-|.-
T Consensus 3 vFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~-kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~ 79 (119)
T cd01788 3 VFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLY-KDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAF 79 (119)
T ss_pred eEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheee-cCceeecccccHHHcCccccccccCCCCeEEEEE
Confidence 7889998888888999999999999999999999999999998 6544 999999999999 6677776653
No 51
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.84 E-value=3.3e-05 Score=59.29 Aligned_cols=69 Identities=22% Similarity=0.385 Sum_probs=51.3
Q ss_pred cEEEEEEeCC-eEEEEEecCCCcHHHHHHHHHHHhCCCCCC------cEEE-EcCeecCCchhhhhcCCCCCCEEEE
Q 022980 56 VIRINVARGP-SQYEVHVPARSTFGDLKKAISEKTGLDPQE------QKVL-FRGKEKEDNEHLDVSGMKDKSKVLL 124 (289)
Q Consensus 56 ~I~V~Vk~g~-~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~------QKLi-ykGK~ldd~~~L~~~GVKdgskL~L 124 (289)
.++|+|.++. ..+++.+|++.+|++|...|.+..+.+... -+|. -+|..++++.+|.++||.||+.|+|
T Consensus 2 ~~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 2 LCRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 4788888874 899999999999999999999999985432 3444 4688899999999999999999987
No 52
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=97.58 E-value=0.00026 Score=53.22 Aligned_cols=65 Identities=18% Similarity=0.304 Sum_probs=48.7
Q ss_pred EEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEE
Q 022980 60 NVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLL 124 (289)
Q Consensus 60 ~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~L 124 (289)
.|.+++.++.|.|.+..++.++-+..+..+|+.+++=.|.|++|.+|-+.+++-.|+-+|++|-|
T Consensus 1 vi~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 1 VICYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp EE-TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred CCccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 35678899999999999999999999999999999999999999999999999999999999865
No 53
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.00059 Score=65.58 Aligned_cols=59 Identities=19% Similarity=0.416 Sum_probs=52.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEE
Q 022980 67 QYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLL 125 (289)
Q Consensus 67 ~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv 125 (289)
.++|.|..+..|.+||+.++.++|||+++.++||-||++.++.++..+.+..-+.+++|
T Consensus 15 ~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~ 73 (446)
T KOG0006|consen 15 GLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIM 73 (446)
T ss_pred ceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhh
Confidence 35788888889999999999999999999999999999999999997777777766555
No 54
>KOG4361 consensus BCL2-associated athanogene-like proteins and related BAG family chaperone regulators [Signal transduction mechanisms]
Probab=97.04 E-value=0.00029 Score=68.38 Aligned_cols=61 Identities=25% Similarity=0.332 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhhhHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q 022980 159 LQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIEAEGEAKVQRKTEVR 226 (289)
Q Consensus 159 ~~aI~~i~~evd~La~~v~~~e~~~~~g~k~~eke~~~LsE~LM~~LLKLD~Ie~eGdaR~~RK~~Vk 226 (289)
...|..|.+++..|...|+.| +++..++.|.+|-|+|.++||+||+|++. .+|..||..|+
T Consensus 284 ~~~V~~~~~~~~~~~~~v~sf------~g~~~~k~y~~~Ee~lt~~ll~ld~~d~~-~~~~ar~~~~~ 344 (344)
T KOG4361|consen 284 SLKVQQILEKVLELEGAVESF------EGPRTDKSYAKLEEFLTKNLLALDSVDPQ-SVRRARKEAVR 344 (344)
T ss_pred ccchhhHhhhhhhhhhhhhhc------CCCccchhHHHHHHhcccccchhhccCcc-hhhhhhhhhcC
Confidence 456778888999999999888 67789999999999999999999999998 99999999874
No 55
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=97.02 E-value=0.0032 Score=48.75 Aligned_cols=70 Identities=24% Similarity=0.372 Sum_probs=60.7
Q ss_pred EEEEEE-eCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEc---Cee--cCCchhhhhcCCCCCCEEEEEee
Q 022980 57 IRINVA-RGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFR---GKE--KEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 57 I~V~Vk-~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiyk---GK~--ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
|.|+|+ ||..-..+.|+|+.+|..||+.|...-|++- .|+|-|. |+. +.+..+|..|||=.+-.|.|++.
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT 76 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLET 76 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEec
Confidence 578888 5777788999999999999999999999877 8999986 443 78899999999988888888874
No 56
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.00036 Score=52.59 Aligned_cols=60 Identities=25% Similarity=0.253 Sum_probs=49.7
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEE
Q 022980 65 PSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLL 124 (289)
Q Consensus 65 ~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~L 124 (289)
|++..|...+++||||+|+.|+.+||--|+...|---+-..+|.-+|+.|.|++|--+-|
T Consensus 11 GKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lel 70 (73)
T KOG3493|consen 11 GKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLEL 70 (73)
T ss_pred CceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEE
Confidence 577889999999999999999999999999666542233478889999999999976654
No 57
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.003 Score=57.50 Aligned_cols=74 Identities=14% Similarity=0.323 Sum_probs=60.7
Q ss_pred cEEEEEEeCCeE--EEEEecCCCcHHHHHHHHHHHhCCCCCCcEE-EEcC------eecCCchhhhhcCCCCCCEEEEEe
Q 022980 56 VIRINVARGPSQ--YEVHVPARSTFGDLKKAISEKTGLDPQEQKV-LFRG------KEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 56 ~I~V~Vk~g~~~--~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKL-iykG------K~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
+++|.|.+.-.. .+..+|+..|+.+||.+|+.+||.+++.++| +|+| ..-++++.|..|++.||..|+++.
T Consensus 1 ~v~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD 80 (234)
T KOG3206|consen 1 MVRVVISSSLNDFRTEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVID 80 (234)
T ss_pred CeEEEEecccccchhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEe
Confidence 367777765444 5678899999999999999999999999998 6776 124678899999999999999996
Q ss_pred eCC
Q 022980 127 ELT 129 (289)
Q Consensus 127 ~~~ 129 (289)
.-+
T Consensus 81 ~~~ 83 (234)
T KOG3206|consen 81 SNA 83 (234)
T ss_pred cCc
Confidence 533
No 58
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=96.75 E-value=0.0031 Score=50.81 Aligned_cols=62 Identities=16% Similarity=0.265 Sum_probs=44.0
Q ss_pred EEEEEEeCCeEEEEEec--CCCcHHHHHHHHHHHhC--CCCCCcEEEEcCeecCCchhhhhcCCCC
Q 022980 57 IRINVARGPSQYEVHVP--ARSTFGDLKKAISEKTG--LDPQEQKVLFRGKEKEDNEHLDVSGMKD 118 (289)
Q Consensus 57 I~V~Vk~g~~~~~V~V~--a~sTvgdLK~~I~e~TG--vpp~~QKLiykGK~ldd~~~L~~~GVKd 118 (289)
|+|++..+--=.+++|+ ...|+..||++|.+..+ ..-.++||||.||.+.|...|...-...
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l~~~ 68 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSELKLP 68 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhhccc
Confidence 45555542111345555 77899999999999883 3345899999999999988887654444
No 59
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=96.59 E-value=0.0052 Score=49.75 Aligned_cols=62 Identities=18% Similarity=0.148 Sum_probs=52.8
Q ss_pred cEEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCe--ecCCchhhhhcCCC
Q 022980 56 VIRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGK--EKEDNEHLDVSGMK 117 (289)
Q Consensus 56 ~I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK--~ldd~~~L~~~GVK 117 (289)
.+.+.|+....+|-++..+..||-+||.+|+..+.-|+..|+|.--.- .++|..+|.++|..
T Consensus 2 ~~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gft 65 (110)
T KOG4495|consen 2 DVFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFT 65 (110)
T ss_pred ceeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhcccc
Confidence 367888877777888888999999999999999999999999865344 39999999999763
No 60
>COG5417 Uncharacterized small protein [Function unknown]
Probab=96.38 E-value=0.014 Score=45.23 Aligned_cols=68 Identities=13% Similarity=0.204 Sum_probs=56.9
Q ss_pred EEEEE-eCCeEEEEEecCCCcHHHHHHHHHHHhCCCC-----CCcEEEEcCeecCCchhhhhcCCCCCCEEEEE
Q 022980 58 RINVA-RGPSQYEVHVPARSTFGDLKKAISEKTGLDP-----QEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLL 125 (289)
Q Consensus 58 ~V~Vk-~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp-----~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv 125 (289)
+|-++ |++..|.+.+|.+-++.-|-..+.+...+.. ...|+.-|++.+-++..|.+|||.||+.|-++
T Consensus 8 TvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~LeiL 81 (81)
T COG5417 8 TVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEIL 81 (81)
T ss_pred EEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEeC
Confidence 33344 4788999999999999999999888777652 36789999999988999999999999998653
No 61
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=96.21 E-value=0.023 Score=42.94 Aligned_cols=45 Identities=22% Similarity=0.487 Sum_probs=41.9
Q ss_pred EEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEc
Q 022980 57 IRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFR 101 (289)
Q Consensus 57 I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiyk 101 (289)
++|.|.+++..+.+.++...|+.+|+.+|...++++....+|-|+
T Consensus 2 ~~vK~~~~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~ 46 (81)
T smart00666 2 VDVKLRYGGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQ 46 (81)
T ss_pred ccEEEEECCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 678899999999999999999999999999999998888888888
No 62
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.037 Score=44.92 Aligned_cols=73 Identities=19% Similarity=0.292 Sum_probs=65.2
Q ss_pred CCcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 54 GPVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 54 ~~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
..-|+++|+- ++....+.|-..+++.-|...-++..|++....|++|.|+.+....+=.+++..+|+.|-++.
T Consensus 18 ~~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~ 91 (99)
T KOG1769|consen 18 SEHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQ 91 (99)
T ss_pred cceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEe
Confidence 3568999984 556678899999999999999999999999999999999998888999999999999997764
No 63
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=95.90 E-value=0.059 Score=40.94 Aligned_cols=71 Identities=20% Similarity=0.334 Sum_probs=56.6
Q ss_pred CCcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCC-cEEE--EcCeecCC--chhhhhcCCCCCCEEEE
Q 022980 54 GPVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQE-QKVL--FRGKEKED--NEHLDVSGMKDKSKVLL 124 (289)
Q Consensus 54 ~~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~-QKLi--ykGK~ldd--~~~L~~~GVKdgskL~L 124 (289)
.+.++|.|+. +|.++.-.++.++|+.+|..-|......+... -.|+ |-.+.+.+ +.+|.++|+.+++.|+|
T Consensus 4 ~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 4 SDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp SSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred CCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence 4567777776 46788999999999999999999988887764 5665 55566433 36999999999999886
No 64
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.54 E-value=0.017 Score=52.82 Aligned_cols=71 Identities=20% Similarity=0.466 Sum_probs=60.1
Q ss_pred cEEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 56 VIRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 56 ~I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
..++.+..-++-+-+.++..+|++++|..|...-|+.+-.|+++|.|+.+-+...|..|+|..|++-.+..
T Consensus 147 ~lk~rlTtT~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqv 217 (231)
T KOG0013|consen 147 ILKLRLTTTREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQV 217 (231)
T ss_pred chHHHhhhhhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEEE
Confidence 34444444456677888899999999999999999999999999999999999999999999998855543
No 65
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=95.21 E-value=0.17 Score=38.52 Aligned_cols=70 Identities=13% Similarity=0.111 Sum_probs=52.8
Q ss_pred CcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEE--EcCeecCC---chhhhhcCCCCCCEEEE
Q 022980 55 PVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVL--FRGKEKED---NEHLDVSGMKDKSKVLL 124 (289)
Q Consensus 55 ~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLi--ykGK~ldd---~~~L~~~GVKdgskL~L 124 (289)
+..+|.|+. +|.+....+++++|+.+|.+-|....+.....-.|+ |-.+.+.+ +.+|.++|+-+++.|+|
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 445666664 567889999999999999999977666666566665 45555432 57999999998888775
No 66
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=95.06 E-value=0.072 Score=41.74 Aligned_cols=47 Identities=15% Similarity=0.216 Sum_probs=40.5
Q ss_pred EEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCee
Q 022980 57 IRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKE 104 (289)
Q Consensus 57 I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ 104 (289)
..|+|.+.. ++-|.+|+..++.+|+.+|.++.++|++..+|-|+-..
T Consensus 3 ~vvKV~f~~-tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~ 49 (80)
T cd06406 3 YVVKVHFKY-TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEA 49 (80)
T ss_pred eEEEEEEEE-EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCC
Confidence 355666654 89999999999999999999999999999999998543
No 67
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=95.05 E-value=0.11 Score=39.16 Aligned_cols=47 Identities=26% Similarity=0.511 Sum_probs=42.8
Q ss_pred cEEEEEEeCCeEEE-EEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcC
Q 022980 56 VIRINVARGPSQYE-VHVPARSTFGDLKKAISEKTGLDPQEQKVLFRG 102 (289)
Q Consensus 56 ~I~V~Vk~g~~~~~-V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykG 102 (289)
+++|.+.|++..+- +.++...|+.+|+..|+...+.+....+|-|..
T Consensus 1 t~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 1 TVRVKVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp SEEEEEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred CEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 47899999988888 999999999999999999999998888999974
No 68
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=94.63 E-value=0.32 Score=36.75 Aligned_cols=68 Identities=10% Similarity=0.182 Sum_probs=48.6
Q ss_pred cEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEE--EcCeec-C--CchhhhhcCCCCCCEEEEE
Q 022980 56 VIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVL--FRGKEK-E--DNEHLDVSGMKDKSKVLLL 125 (289)
Q Consensus 56 ~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLi--ykGK~l-d--d~~~L~~~GVKdgskL~Lv 125 (289)
..+|.|+. +|.+....++.++|+++|.+-|.....- +..-.|+ |-.+.+ + .+.+|.++|+. .+.+++.
T Consensus 2 ~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~-~s~~~~~ 75 (77)
T cd01767 2 TTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLV-NEVVFQR 75 (77)
T ss_pred cEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCc-cceEEEE
Confidence 34555654 4567888999999999999999876544 4445565 445554 3 68899999999 5555543
No 69
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.04 E-value=0.43 Score=36.81 Aligned_cols=67 Identities=12% Similarity=0.135 Sum_probs=48.7
Q ss_pred cEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCC-CCCcEEE--EcCee-cCCchhhhhcCCCCCCEE
Q 022980 56 VIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLD-PQEQKVL--FRGKE-KEDNEHLDVSGMKDKSKV 122 (289)
Q Consensus 56 ~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvp-p~~QKLi--ykGK~-ldd~~~L~~~GVKdgskL 122 (289)
..+|.|+. +|.+....++.++||++|.+.|....+-+ ...-.|+ |-.|. -+++.+|.++|+.+...+
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~ 75 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIV 75 (79)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence 44555554 45778889999999999999999876533 2445665 66777 456889999999964433
No 70
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=93.94 E-value=0.18 Score=37.78 Aligned_cols=46 Identities=30% Similarity=0.431 Sum_probs=39.6
Q ss_pred EEEEEEeCCeEEEEEec-CCCcHHHHHHHHHHHhCCCCCCcEEEEcC
Q 022980 57 IRINVARGPSQYEVHVP-ARSTFGDLKKAISEKTGLDPQEQKVLFRG 102 (289)
Q Consensus 57 I~V~Vk~g~~~~~V~V~-a~sTvgdLK~~I~e~TGvpp~~QKLiykG 102 (289)
++|++.|++..+.+.++ ...|+.+|+.+|+..++++.....|-|+.
T Consensus 1 ~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D 47 (81)
T cd05992 1 VRVKVKYGGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD 47 (81)
T ss_pred CcEEEEecCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 46888999889999999 88899999999999999987566666764
No 71
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=93.67 E-value=0.26 Score=38.46 Aligned_cols=46 Identities=20% Similarity=0.405 Sum_probs=39.4
Q ss_pred EEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCC-CCcEEEEcC
Q 022980 57 IRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDP-QEQKVLFRG 102 (289)
Q Consensus 57 I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp-~~QKLiykG 102 (289)
|+|++.+|+..+.+.+|+..++.+|++.|+..+++.. ....|-|..
T Consensus 1 ~~vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~D 47 (82)
T cd06407 1 VRVKATYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLD 47 (82)
T ss_pred CEEEEEeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEEC
Confidence 5788999999999999999999999999999999875 445565653
No 72
>PRK06437 hypothetical protein; Provisional
Probab=93.22 E-value=0.47 Score=35.39 Aligned_cols=54 Identities=28% Similarity=0.408 Sum_probs=43.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 64 GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 64 g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
|+....++++...|+.+|=+. .|++++...+..+|.... .++-|++||+|-++.
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~ 62 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILE 62 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----CceEcCCCCEEEEEe
Confidence 667778888988999988655 589999888889999976 445679999998874
No 73
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=92.50 E-value=0.072 Score=51.82 Aligned_cols=64 Identities=20% Similarity=0.259 Sum_probs=47.5
Q ss_pred CcEEEEEEeCCeEE-EEEecC--CCcHHHHHHHHHHHhCCC--CCCcEEEEcCeecCCchhhhhcCCCC
Q 022980 55 PVIRINVARGPSQY-EVHVPA--RSTFGDLKKAISEKTGLD--PQEQKVLFRGKEKEDNEHLDVSGMKD 118 (289)
Q Consensus 55 ~~I~V~Vk~g~~~~-~V~V~a--~sTvgdLK~~I~e~TGvp--p~~QKLiykGK~ldd~~~L~~~GVKd 118 (289)
-.+++.||...++| .++|.. .=||++||..++.+.-=- +.+|||||.||.+.|...|.+.=.|.
T Consensus 8 ~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq 76 (391)
T KOG4583|consen 8 FPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQ 76 (391)
T ss_pred cceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHH
Confidence 34778888766666 355544 449999999998875433 35899999999999999888765543
No 74
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=92.29 E-value=0.77 Score=34.93 Aligned_cols=66 Identities=20% Similarity=0.274 Sum_probs=44.2
Q ss_pred cEEEEEEe--------CCeEEEEEecCCCcHHHHHHHHHHHh-CCCC--CCcEEEEcCeecCCchhhhhcCCCCCCEEEE
Q 022980 56 VIRINVAR--------GPSQYEVHVPARSTFGDLKKAISEKT-GLDP--QEQKVLFRGKEKEDNEHLDVSGMKDKSKVLL 124 (289)
Q Consensus 56 ~I~V~Vk~--------g~~~~~V~V~a~sTvgdLK~~I~e~T-Gvpp--~~QKLiykGK~ldd~~~L~~~GVKdgskL~L 124 (289)
+|.|+|++ |.....++++...|+.+|.+.|.... ++.. ..-.+..+|+..++ +.-|++||+|.+
T Consensus 1 ~m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~-----~~~l~dgDeVai 75 (82)
T PLN02799 1 SVEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTE-----SAALKDGDELAI 75 (82)
T ss_pred CeEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCC-----CcCcCCCCEEEE
Confidence 36778876 44567788998899999999987654 1111 11235566666443 234799999998
Q ss_pred Ee
Q 022980 125 LE 126 (289)
Q Consensus 125 v~ 126 (289)
+.
T Consensus 76 ~P 77 (82)
T PLN02799 76 IP 77 (82)
T ss_pred eC
Confidence 74
No 75
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=92.28 E-value=0.28 Score=37.73 Aligned_cols=59 Identities=22% Similarity=0.270 Sum_probs=48.6
Q ss_pred ecCCCcHHHHHHHHHHHhCC-CCCCcEEEEcCeecCCchhhhhc-CCCCCCEEEEEeeCCC
Q 022980 72 VPARSTFGDLKKAISEKTGL-DPQEQKVLFRGKEKEDNEHLDVS-GMKDKSKVLLLEELTN 130 (289)
Q Consensus 72 V~a~sTvgdLK~~I~e~TGv-pp~~QKLiykGK~ldd~~~L~~~-GVKdgskL~Lv~~~~s 130 (289)
|.++++|.||++.|...... .-..-.|.|+|+.+++...|.++ |+++|++|.|+.+|..
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~pYt 61 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEEPYT 61 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEecCCC
Confidence 46788999999999887553 34567888999999988888776 6999999999987764
No 76
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=92.27 E-value=1.4 Score=34.54 Aligned_cols=71 Identities=15% Similarity=0.330 Sum_probs=56.1
Q ss_pred CCcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEE--EcCee---cCCchhhhhcCCCCCCEEEEE
Q 022980 54 GPVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVL--FRGKE---KEDNEHLDVSGMKDKSKVLLL 125 (289)
Q Consensus 54 ~~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLi--ykGK~---ldd~~~L~~~GVKdgskL~Lv 125 (289)
.|.-+|.|+. +|.+..-.+....++.+|...+.. -|.+++..+|+ |=-|. .+.+.+|.++|+.+...|++=
T Consensus 3 ~~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq 79 (82)
T cd01773 3 GPKARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 79 (82)
T ss_pred CCeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEe
Confidence 4556666665 568889999999999999999988 57788888887 33444 355679999999999998863
No 77
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=91.93 E-value=1.5 Score=33.53 Aligned_cols=67 Identities=15% Similarity=0.203 Sum_probs=50.1
Q ss_pred EEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEE--EcCeecC---CchhhhhcCCCCCCEEEE
Q 022980 57 IRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVL--FRGKEKE---DNEHLDVSGMKDKSKVLL 124 (289)
Q Consensus 57 I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLi--ykGK~ld---d~~~L~~~GVKdgskL~L 124 (289)
.+|.|+. +|.+....+++++|+.+|.+-|....+-. ..-.|+ |--|... .+.+|.++|+.+...|+|
T Consensus 5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 4555663 56778889999999999999998765543 345565 5566643 357999999999888876
No 78
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=91.71 E-value=0.46 Score=44.77 Aligned_cols=68 Identities=24% Similarity=0.337 Sum_probs=48.5
Q ss_pred EEEEEeCC--eEEE-EEecCCCcHHHHHHHHH-HHhCCCCCCcEEEE----cCeecCCchhhhhcCCCCCCEEEEE
Q 022980 58 RINVARGP--SQYE-VHVPARSTFGDLKKAIS-EKTGLDPQEQKVLF----RGKEKEDNEHLDVSGMKDKSKVLLL 125 (289)
Q Consensus 58 ~V~Vk~g~--~~~~-V~V~a~sTvgdLK~~I~-e~TGvpp~~QKLiy----kGK~ldd~~~L~~~GVKdgskL~Lv 125 (289)
.|+++..+ .... ..++...|++|+++.+. ....+.+.++|+.+ +|+.+-|+.+|++||+..|++|.+-
T Consensus 2 ~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~vK 77 (297)
T KOG1639|consen 2 EITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYVK 77 (297)
T ss_pred ceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEEe
Confidence 35555433 3444 55666679999996655 45667776666554 5888888899999999999998864
No 79
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=91.53 E-value=1.1 Score=33.34 Aligned_cols=58 Identities=19% Similarity=0.278 Sum_probs=42.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHHhCC----CCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 64 GPSQYEVHVPARSTFGDLKKAISEKTGL----DPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 64 g~~~~~V~V~a~sTvgdLK~~I~e~TGv----pp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
|.....++++...|+.+|.+.|....+- ......+..+|+.... +.-|++||.|.++-
T Consensus 14 g~~~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~-----~~~l~~gD~v~i~p 75 (80)
T cd00754 14 GKDEEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVRL-----DTPLKDGDEVAIIP 75 (80)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCC-----CcccCCCCEEEEeC
Confidence 4445678888889999999999987542 3344566678887552 34589999999884
No 80
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=91.30 E-value=1.4 Score=32.90 Aligned_cols=61 Identities=20% Similarity=0.266 Sum_probs=43.5
Q ss_pred EEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 57 IRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 57 I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
|+|++-.......++++...|+.+|-+.+ +++++.-.+..+|..... +.-|++||+|-++.
T Consensus 5 m~v~vng~~~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~-----~~~l~~gD~Veii~ 65 (70)
T PRK08364 5 IRVKVIGRGIEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALE-----DDPVKDGDYVEVIP 65 (70)
T ss_pred EEEEEeccccceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCC-----CcCcCCCCEEEEEc
Confidence 44554222224578888888999987665 888877777788888643 44579999998874
No 81
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=90.66 E-value=2.6 Score=32.93 Aligned_cols=68 Identities=7% Similarity=0.089 Sum_probs=50.8
Q ss_pred cEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcC--eec--------CCchhhhhcCCCCCCEEEE
Q 022980 56 VIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRG--KEK--------EDNEHLDVSGMKDKSKVLL 124 (289)
Q Consensus 56 ~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykG--K~l--------dd~~~L~~~GVKdgskL~L 124 (289)
.++|.|+. .|.+..-.+..++|+.+|..-|.. .+-.|+.-.|++.= |.+ +.+.+|.++||.+...|++
T Consensus 4 ~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V 82 (85)
T cd01774 4 TVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFV 82 (85)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEE
Confidence 46666664 467888999999999999999964 45566778887643 444 3467999999997776654
No 82
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=90.53 E-value=2.4 Score=32.77 Aligned_cols=69 Identities=17% Similarity=0.238 Sum_probs=53.4
Q ss_pred CcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEE--EcCeec---CCchhhhhcCCCCCCEEEE
Q 022980 55 PVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVL--FRGKEK---EDNEHLDVSGMKDKSKVLL 124 (289)
Q Consensus 55 ~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLi--ykGK~l---dd~~~L~~~GVKdgskL~L 124 (289)
+.++|.|+. .|.+..-.++.++++++|..-|... |.+++.-+|+ |--|.+ +.+.+|.++|+.....|++
T Consensus 3 ~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~V 77 (80)
T cd01771 3 PISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLIL 77 (80)
T ss_pred CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEE
Confidence 456666665 4577888999999999999999864 7777778886 445543 4467999999998888775
No 83
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=90.13 E-value=1.5 Score=38.70 Aligned_cols=64 Identities=17% Similarity=0.229 Sum_probs=47.6
Q ss_pred EEEEEEe-CC----eEEEEEecCCCcHHHHHHHHHHHhCCCCCCcE-EEE-cCee--cCCchhhhhcCCCCCC
Q 022980 57 IRINVAR-GP----SQYEVHVPARSTFGDLKKAISEKTGLDPQEQK-VLF-RGKE--KEDNEHLDVSGMKDKS 120 (289)
Q Consensus 57 I~V~Vk~-g~----~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QK-Liy-kGK~--ldd~~~L~~~GVKdgs 120 (289)
|.|.|+. .+ .++.+.+|+.+||.+|+..|...+++++..|- |.+ .|+. ..++..++.+--.+.+
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~ 73 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQD 73 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCC
Confidence 4677775 34 57889999999999999999999999998853 444 3444 4666777777655554
No 84
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=90.06 E-value=1.4 Score=34.93 Aligned_cols=45 Identities=20% Similarity=0.385 Sum_probs=37.5
Q ss_pred cEEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEc
Q 022980 56 VIRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFR 101 (289)
Q Consensus 56 ~I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiyk 101 (289)
.|+|.|.+++...-|.||+.-++.+|...|.+.+|+. ...+|-|+
T Consensus 2 ~ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKyk 46 (86)
T cd06408 2 KIRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMK 46 (86)
T ss_pred cEEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEE
Confidence 4788999989999999999999999999999999995 33344343
No 85
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=89.99 E-value=1.2 Score=34.93 Aligned_cols=36 Identities=14% Similarity=0.292 Sum_probs=33.6
Q ss_pred EEEEEEeCCeEEEEEecC--CCcHHHHHHHHHHHhCCC
Q 022980 57 IRINVARGPSQYEVHVPA--RSTFGDLKKAISEKTGLD 92 (289)
Q Consensus 57 I~V~Vk~g~~~~~V~V~a--~sTvgdLK~~I~e~TGvp 92 (289)
|+|++.|++.+..+.+++ ..++.+|++.|...++++
T Consensus 1 V~vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~ 38 (81)
T cd06396 1 VNLKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN 38 (81)
T ss_pred CEEEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC
Confidence 578999999999999999 669999999999999999
No 86
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=89.76 E-value=1.4 Score=35.16 Aligned_cols=46 Identities=15% Similarity=0.335 Sum_probs=38.5
Q ss_pred EEEEEEeCCeEEEEEecC-----CCcHHHHHHHHHHHhCCCC-CCcEEEEcC
Q 022980 57 IRINVARGPSQYEVHVPA-----RSTFGDLKKAISEKTGLDP-QEQKVLFRG 102 (289)
Q Consensus 57 I~V~Vk~g~~~~~V~V~a-----~sTvgdLK~~I~e~TGvpp-~~QKLiykG 102 (289)
+.|+|+|++..+-+.+|. +.++.+|+++|++.+.+++ ..-.|-|+.
T Consensus 1 l~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~D 52 (91)
T cd06398 1 LVVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTD 52 (91)
T ss_pred CEEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEEC
Confidence 368999999999999995 5799999999999999998 455566763
No 87
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=89.38 E-value=1.5 Score=35.39 Aligned_cols=40 Identities=20% Similarity=0.226 Sum_probs=34.2
Q ss_pred EEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEc
Q 022980 61 VAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFR 101 (289)
Q Consensus 61 Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiyk 101 (289)
+.| ||.+.-+.|+...|+.+|+.+|++.++++.. ..|-|.
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky~ 57 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKYQ 57 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEEE
Confidence 455 8899999999999999999999999999876 555553
No 88
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=88.98 E-value=1.8 Score=43.70 Aligned_cols=70 Identities=17% Similarity=0.268 Sum_probs=56.6
Q ss_pred EEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCC------CCCcEEE-EcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 57 IRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLD------PQEQKVL-FRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 57 I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvp------p~~QKLi-ykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
.+|+|..+....++-+|.+..++||--.|....|-. +..=.|. -.|..+|.+.+|.+.||.||+.|+|..
T Consensus 3 ~RVtV~~~~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p 79 (452)
T TIGR02958 3 CRVTVLAGRRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVP 79 (452)
T ss_pred EEEEEeeCCeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEee
Confidence 578898888889999999999999999988888742 1111222 246679999999999999999999985
No 89
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=88.44 E-value=7 Score=41.70 Aligned_cols=68 Identities=28% Similarity=0.354 Sum_probs=51.0
Q ss_pred EEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCee--cCCchhhhhcCCCCCCEEEEEe
Q 022980 57 IRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKE--KEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 57 I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~--ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
+.|+-......|.+.++++.|+..|+.+|...||+|.+.|-|+|.|.. +.+.....--|+ .+-|+++.
T Consensus 316 vhiFs~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~h~~~~~Q~~~dg~--~~~l~l~~ 385 (732)
T KOG4250|consen 316 VHIFSMVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLSHLEDSAQCIPDGL--DSPLYLVS 385 (732)
T ss_pred eEEEeeccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCccccCcccccCCCCC--CCceEEEe
Confidence 455555577889999999999999999999999999999999999876 455444333341 33455553
No 90
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=87.98 E-value=1.3 Score=34.65 Aligned_cols=39 Identities=13% Similarity=0.233 Sum_probs=35.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCee
Q 022980 66 SQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKE 104 (289)
Q Consensus 66 ~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ 104 (289)
-++.|.++...++++|+.+|+++..++++.-+|-|+-..
T Consensus 7 fTVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~~~ 45 (78)
T cd06411 7 FTVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRAPG 45 (78)
T ss_pred EEEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecCCC
Confidence 467889999999999999999999999999999998543
No 91
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=87.78 E-value=1.8 Score=35.01 Aligned_cols=69 Identities=20% Similarity=0.316 Sum_probs=59.5
Q ss_pred cEEEEEE-eCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEE
Q 022980 56 VIRINVA-RGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLL 124 (289)
Q Consensus 56 ~I~V~Vk-~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~L 124 (289)
-|.++|. .++...-+.|--..||.-|-...+...|-.-...|++|.|+..+.+.+=.+++..+++.|-.
T Consensus 24 hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEa 93 (103)
T COG5227 24 HINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEA 93 (103)
T ss_pred ccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHH
Confidence 4777777 35666778888889999999999999999999999999999999889989999988887643
No 92
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=87.29 E-value=2.1 Score=34.18 Aligned_cols=58 Identities=17% Similarity=0.251 Sum_probs=41.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEc----Cee-c-CCchhhhhcCCCCCCEEEE
Q 022980 66 SQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFR----GKE-K-EDNEHLDVSGMKDKSKVLL 124 (289)
Q Consensus 66 ~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiyk----GK~-l-dd~~~L~~~GVKdgskL~L 124 (289)
..+...|...+||+.+...+...+.| ++.-||--+ +-+ + +...+|.++||.+|..|+|
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vli 77 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLI 77 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEE
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEE
Confidence 35778899999999999999999999 777888543 233 4 5567999999999997664
No 93
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=86.55 E-value=4.7 Score=30.44 Aligned_cols=58 Identities=17% Similarity=0.308 Sum_probs=40.8
Q ss_pred CCeEEEEEecCC-CcHHHHHHHHHHHhC-CC--CCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 64 GPSQYEVHVPAR-STFGDLKKAISEKTG-LD--PQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 64 g~~~~~V~V~a~-sTvgdLK~~I~e~TG-vp--p~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
|.....++++.. +|+.+|.+.|.+..+ +. .....+..+|+...+ +.-|++|+.|.++.
T Consensus 14 g~~~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~P 75 (80)
T TIGR01682 14 GTDEETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIP 75 (80)
T ss_pred CCCeEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeC
Confidence 333457888877 899999999988864 21 123456677777554 35679999999884
No 94
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=86.25 E-value=6.5 Score=30.06 Aligned_cols=59 Identities=19% Similarity=0.255 Sum_probs=39.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHHhCC-----CC------CCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 64 GPSQYEVHVPARSTFGDLKKAISEKTGL-----DP------QEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 64 g~~~~~V~V~a~sTvgdLK~~I~e~TGv-----pp------~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
|.....|+++ ..|+.+|.+.|.+...- -. ....+..+|+..+.... .-|++||.|.++-
T Consensus 14 g~~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~P 83 (88)
T TIGR01687 14 GKKSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFP 83 (88)
T ss_pred CCceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeC
Confidence 4344667777 78999999999877531 01 12445667777443321 5689999999884
No 95
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=86.13 E-value=0.22 Score=47.85 Aligned_cols=65 Identities=18% Similarity=0.310 Sum_probs=0.0
Q ss_pred CCCcEEEEEEeCC-eEEEEEecC-----CCcHHHHHHHHHH----------HhCCCCCCcE-----EEEcCeecCCchhh
Q 022980 53 GGPVIRINVARGP-SQYEVHVPA-----RSTFGDLKKAISE----------KTGLDPQEQK-----VLFRGKEKEDNEHL 111 (289)
Q Consensus 53 ~~~~I~V~Vk~g~-~~~~V~V~a-----~sTvgdLK~~I~e----------~TGvpp~~QK-----LiykGK~ldd~~~L 111 (289)
+...|+|++|.-. -...|.++. +.+|.|||..+++ .++||.+..| |+|+-|..-|..+|
T Consensus 75 s~~sItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl 154 (309)
T PF12754_consen 75 SSKSITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTL 154 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcH
Confidence 3456888888632 234455443 3589999999999 9999999888 99999998777777
Q ss_pred hhcCCC
Q 022980 112 DVSGMK 117 (289)
Q Consensus 112 ~~~GVK 117 (289)
.+..-.
T Consensus 155 ~e~l~~ 160 (309)
T PF12754_consen 155 AEVLAD 160 (309)
T ss_dssp ------
T ss_pred HHHHhc
Confidence 666543
No 96
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=85.84 E-value=1.4 Score=43.46 Aligned_cols=63 Identities=14% Similarity=0.237 Sum_probs=54.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecC-C-chhhhhcCCCCCCEEEEEe
Q 022980 64 GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKE-D-NEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 64 g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ld-d-~~~L~~~GVKdgskL~Lv~ 126 (289)
.-+.+++.+...-.+..|+..+...+|+.....-|+|+++.+. + ...|.+||+++++.|++=.
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ 75 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRC 75 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccC
Confidence 3455788888888999999999999999999999999999954 3 6789999999999998764
No 97
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.80 E-value=1.3 Score=43.25 Aligned_cols=68 Identities=18% Similarity=0.144 Sum_probs=51.8
Q ss_pred EEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEc---Cee-----cCCchhhhhcCCCCCCEEEEEe
Q 022980 59 INVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFR---GKE-----KEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 59 V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiyk---GK~-----ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
+...+.......-|.-+-||-|++..+...-|+-+.++||+|- ||. .+.+.+|+.|.|.+|+.+++=+
T Consensus 341 ~l~~~~~v~~s~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvqe 416 (418)
T KOG2982|consen 341 ALNSGPKVIASGLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQE 416 (418)
T ss_pred eeccCCccccceEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeeec
Confidence 3333333344555556669999999999999999999999874 554 4567889999999999987643
No 98
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=83.18 E-value=3.4 Score=38.24 Aligned_cols=72 Identities=19% Similarity=0.344 Sum_probs=50.8
Q ss_pred CCCcEEEEEEe---CCeE--E--EEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEc----Cee--cCCchhhhhcCCCCC
Q 022980 53 GGPVIRINVAR---GPSQ--Y--EVHVPARSTFGDLKKAISEKTGLDPQEQKVLFR----GKE--KEDNEHLDVSGMKDK 119 (289)
Q Consensus 53 ~~~~I~V~Vk~---g~~~--~--~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiyk----GK~--ldd~~~L~~~GVKdg 119 (289)
....|.|++|| ..++ | .+.|+.+++|++|-..|.+..|+|++..-++|- ++. ++...++..+.|.+|
T Consensus 65 ~~~~iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~G 144 (249)
T PF12436_consen 65 PSDDILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDG 144 (249)
T ss_dssp TTTEEEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TT
T ss_pred CCCcEEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCC
Confidence 34579999997 2222 2 478999999999999999999999987777775 555 789999999999999
Q ss_pred CEEEE
Q 022980 120 SKVLL 124 (289)
Q Consensus 120 skL~L 124 (289)
|-|..
T Consensus 145 dIi~f 149 (249)
T PF12436_consen 145 DIICF 149 (249)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 98654
No 99
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=82.99 E-value=3.7 Score=32.33 Aligned_cols=43 Identities=12% Similarity=0.119 Sum_probs=38.3
Q ss_pred EEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEE
Q 022980 58 RINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLF 100 (289)
Q Consensus 58 ~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiy 100 (289)
+.+|++++....+.+|..-|+..|+++|+....+|+...-|.|
T Consensus 2 ~fKv~~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtY 44 (82)
T cd06397 2 QFKSSFLGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTY 44 (82)
T ss_pred eEEEEeCCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEE
Confidence 5678999999999999999999999999999999998666666
No 100
>PRK01777 hypothetical protein; Validated
Probab=82.66 E-value=9.2 Score=30.68 Aligned_cols=62 Identities=18% Similarity=0.236 Sum_probs=44.1
Q ss_pred cEEEEEEeC--C--eEEEEEecCCCcHHHHHHHHHHHhCCCCC--C-----cEEEEcCeecCCchhhhhcCCCCCCEEEE
Q 022980 56 VIRINVARG--P--SQYEVHVPARSTFGDLKKAISEKTGLDPQ--E-----QKVLFRGKEKEDNEHLDVSGMKDKSKVLL 124 (289)
Q Consensus 56 ~I~V~Vk~g--~--~~~~V~V~a~sTvgdLK~~I~e~TGvpp~--~-----QKLiykGK~ldd~~~L~~~GVKdgskL~L 124 (289)
+|.|.|.|. . ....+++|..+|++++=.. .||+.+ . -++.-.|+...-+. -|++||+|-+
T Consensus 3 ~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~----sgi~~~~pei~~~~~~vgI~Gk~v~~d~-----~L~dGDRVeI 73 (95)
T PRK01777 3 KIRVEVVYALPERQYLQRLTLQEGATVEEAIRA----SGLLELRTDIDLAKNKVGIYSRPAKLTD-----VLRDGDRVEI 73 (95)
T ss_pred eeEEEEEEECCCceEEEEEEcCCCCcHHHHHHH----cCCCccCcccccccceEEEeCeECCCCC-----cCCCCCEEEE
Confidence 688888882 2 2356899999999997555 577665 2 35666788754434 3699999998
Q ss_pred Ee
Q 022980 125 LE 126 (289)
Q Consensus 125 v~ 126 (289)
..
T Consensus 74 yr 75 (95)
T PRK01777 74 YR 75 (95)
T ss_pred ec
Confidence 85
No 101
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=78.81 E-value=16 Score=28.43 Aligned_cols=60 Identities=22% Similarity=0.386 Sum_probs=45.6
Q ss_pred eCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEE--cCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 63 RGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLF--RGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 63 ~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiy--kGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
+...+|-|-. .++.||+.+.++.++++.+.-+|+. .|.+.+|++++.. +.++..+|++..
T Consensus 11 ~r~~k~Gv~A---~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~t--Lp~nT~lm~L~~ 72 (78)
T PF02017_consen 11 DRSVKKGVAA---SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQT--LPDNTVLMLLEK 72 (78)
T ss_dssp TSSCEEEEEE---SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCC--SSSSEEEEEEES
T ss_pred CCCceEeEEc---CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhh--CCCCCEEEEECC
Confidence 3455555533 5899999999999999977666654 6888998888866 678888888863
No 102
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=78.78 E-value=12 Score=27.22 Aligned_cols=58 Identities=9% Similarity=0.068 Sum_probs=40.3
Q ss_pred EEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 61 VARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 61 Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
|.-+++.+.+ + ..|+.+|...+ +++++...+-++|.... .....+.-|++||+|-++.
T Consensus 3 i~~Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~ 60 (65)
T PRK06488 3 LFVNGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILS 60 (65)
T ss_pred EEECCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEE
Confidence 4445666666 3 35888888765 77776666778888844 2334456689999998874
No 103
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=78.68 E-value=15 Score=28.66 Aligned_cols=64 Identities=16% Similarity=0.208 Sum_probs=47.0
Q ss_pred EEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEE--EEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 58 RINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKV--LFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 58 ~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKL--iykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
+|.-.+...+|-| +..++.||+.+.++.++++...-+| --.|.+.|+.+++.. +.++..+|++.
T Consensus 6 kV~~~~r~~k~GV---~A~sL~EL~~K~~~~l~~~~~~~~lvL~eDGT~Vd~EeyF~~--LpdnT~lm~L~ 71 (78)
T cd06539 6 RVSNHDRSSRRGV---MASSLQELISKTLDALVITSGLVTLVLEEDGTVVDTEEFFQT--LGDNTHFMVLE 71 (78)
T ss_pred EEecCCCCceEEE---EecCHHHHHHHHHHHhCCCCCCcEEEEeCCCCEEccHHHHhh--CCCCCEEEEEC
Confidence 3333344444544 3347999999999999998654444 457889999999887 68899999986
No 104
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=77.75 E-value=10 Score=27.61 Aligned_cols=53 Identities=19% Similarity=0.369 Sum_probs=39.0
Q ss_pred EEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 69 EVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 69 ~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
+++++...|+.+|.+.+ +++++...+.++|+....+ .....-|++||+|-++.
T Consensus 8 ~~~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~ 60 (65)
T cd00565 8 PREVEEGATLAELLEEL----GLDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVT 60 (65)
T ss_pred EEEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEE
Confidence 45566778999887765 6888888888999985432 23344589999998874
No 105
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=77.45 E-value=15 Score=28.62 Aligned_cols=59 Identities=25% Similarity=0.354 Sum_probs=44.2
Q ss_pred eCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEE--EcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 63 RGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVL--FRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 63 ~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLi--ykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
+...+|-| -+ .++.+|+.+.++.++++...-+|+ -.|-+.+|.+++.. +.++..+|++.
T Consensus 11 ~r~~k~GV--~A-~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEeYF~t--Lp~nT~l~~l~ 71 (78)
T cd01615 11 DRSRKKGV--AA-SSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEEYFQT--LPDNTVLMLLE 71 (78)
T ss_pred CCCeeEEE--Ec-CCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHHHHhc--CCCCcEEEEEC
Confidence 34444444 33 479999999999999976555543 46888999999877 67888888886
No 106
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=76.14 E-value=7.8 Score=30.19 Aligned_cols=52 Identities=17% Similarity=0.297 Sum_probs=40.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEE-cCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 66 SQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLF-RGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 66 ~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiy-kGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
..+.+.++..+|++++ -+..|||..+..+|+ +|+..+-+ |-+++|+.|.+..
T Consensus 23 ~~~~~~~~~~~tvkd~----IEsLGVP~tEV~~i~vNG~~v~~~-----~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 23 GPFTHPFDGGATVKDV----IESLGVPHTEVGLILVNGRPVDFD-----YRLKDGDRVAVYP 75 (81)
T ss_pred CceEEecCCCCcHHHH----HHHcCCChHHeEEEEECCEECCCc-----ccCCCCCEEEEEe
Confidence 4566788899999997 455899999888765 78876543 6689999998763
No 107
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=76.01 E-value=6.2 Score=29.04 Aligned_cols=48 Identities=19% Similarity=0.396 Sum_probs=36.2
Q ss_pred EEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 69 EVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 69 ~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
.+.+....|+.+||..+.. +.=.+||+|-...++.. +++||.|.|+.+
T Consensus 9 ~~~~~~~~tl~~lr~~~k~------~~DI~I~NGF~~~~d~~-----L~e~D~v~~Ikk 56 (57)
T PF14453_consen 9 EIETEENTTLFELRKESKP------DADIVILNGFPTKEDIE-----LKEGDEVFLIKK 56 (57)
T ss_pred EEEcCCCcCHHHHHHhhCC------CCCEEEEcCcccCCccc-----cCCCCEEEEEeC
Confidence 4566777899999998654 33378999999655444 599999999863
No 108
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=75.70 E-value=20 Score=27.76 Aligned_cols=50 Identities=20% Similarity=0.358 Sum_probs=40.7
Q ss_pred CCcHHHHHHHHHHHhCCCCCCcEEE--EcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 75 RSTFGDLKKAISEKTGLDPQEQKVL--FRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 75 ~sTvgdLK~~I~e~TGvpp~~QKLi--ykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
..++.+|+.+.++.++++...-+|. -.|.+.++.+++.. +.++..+|++.
T Consensus 18 A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEeyF~t--Lp~nt~l~~L~ 69 (74)
T smart00266 18 ASSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYFQT--LPDNTELMALE 69 (74)
T ss_pred cCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHHHhc--CCCCcEEEEEc
Confidence 3479999999999999996655553 37888999999876 67888888875
No 109
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=74.39 E-value=28 Score=26.45 Aligned_cols=52 Identities=12% Similarity=0.103 Sum_probs=31.3
Q ss_pred EEecC-CCcHHHHHHHHHHHhCC-----CCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 70 VHVPA-RSTFGDLKKAISEKTGL-----DPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 70 V~V~a-~sTvgdLK~~I~e~TGv-----pp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
+++++ .+|+++|++.|.+...- .....++..++..-.. +.-|++||.|.++-
T Consensus 19 ~~v~~~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~-----~~~l~dgDeVai~P 76 (81)
T PRK11130 19 LELAADFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFP 76 (81)
T ss_pred EEecCCCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCC-----CCCCCCCCEEEEeC
Confidence 34443 47999999999887521 1122233344443222 22489999999884
No 110
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=74.21 E-value=16 Score=30.85 Aligned_cols=55 Identities=22% Similarity=0.435 Sum_probs=38.9
Q ss_pred ecC-CCcHHHHHHHHHH----HhCCCC------CCcEEEEc----------------C-eec---CCchhhhhcCCCCCC
Q 022980 72 VPA-RSTFGDLKKAISE----KTGLDP------QEQKVLFR----------------G-KEK---EDNEHLDVSGMKDKS 120 (289)
Q Consensus 72 V~a-~sTvgdLK~~I~e----~TGvpp------~~QKLiyk----------------G-K~l---dd~~~L~~~GVKdgs 120 (289)
|+- +.|++||++.+.+ ..|++| +..||+++ . -.+ +++.+|.++||.+..
T Consensus 22 vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nET 101 (122)
T PF10209_consen 22 VDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENET 101 (122)
T ss_pred CCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCccc
Confidence 554 6799999887665 467765 45677655 1 225 667789999999998
Q ss_pred EEEEEe
Q 022980 121 KVLLLE 126 (289)
Q Consensus 121 kL~Lv~ 126 (289)
.|-+.-
T Consensus 102 EiSfF~ 107 (122)
T PF10209_consen 102 EISFFN 107 (122)
T ss_pred eeeeeC
Confidence 887764
No 111
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=74.13 E-value=18 Score=26.08 Aligned_cols=59 Identities=12% Similarity=0.191 Sum_probs=40.3
Q ss_pred EEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 61 VARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 61 Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
|..+|+. ++++...|+.+|-.. .|+++...-+.++|...... ...+.-|++||+|-++.
T Consensus 3 i~vNG~~--~~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~-~~~~~~l~~gD~vei~~ 61 (66)
T PRK05659 3 IQLNGEP--RELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRS-QHASTALREGDVVEIVH 61 (66)
T ss_pred EEECCeE--EEcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHH-HcCcccCCCCCEEEEEE
Confidence 4445554 466777888877544 68999888888999763322 23334479999998774
No 112
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=73.63 E-value=7.5 Score=33.84 Aligned_cols=57 Identities=14% Similarity=0.173 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhhhHHHHHHHHHhhcCCC
Q 022980 152 SEEMRKALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIE 212 (289)
Q Consensus 152 ~~~i~ka~~aI~~i~~evd~La~~v~~~e~~~~~g~k~~eke~~~LsE~LM~~LLKLD~Ie 212 (289)
...+.+|++.=--..++++.+ ++.+|..+...+ ..+-.-..+.|++|..|-+||.|.
T Consensus 67 ~~gl~~Ac~KRpVs~e~ie~~---v~~Ie~~l~~~~-~~EI~S~~IGe~Vm~~L~~lD~VA 123 (147)
T TIGR00244 67 LRGMVRACEKRPVSFDDLEHA---INHIEAQLRAQG-EREVPSELIGQMVMQYLKKLDEVA 123 (147)
T ss_pred HHHHHHHhcCCCCCHHHHHHH---HHHHHHHHHHcC-CCcccHHHHHHHHHHHHhhcCcch
Confidence 344555653211112345555 555555554333 345556789999999999999995
No 113
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=73.13 E-value=18 Score=26.50 Aligned_cols=57 Identities=12% Similarity=0.166 Sum_probs=39.1
Q ss_pred EeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 62 ARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 62 k~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
.-+|+.+ .++...|+.+|=.. .+++++..-+.++|....... ...+ +++||+|-++.
T Consensus 4 ~vNG~~~--~~~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~-~~~~-L~~gD~ieIv~ 60 (65)
T PRK05863 4 VVNEEQV--EVDEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSD-WATK-LRDGARLEVVT 60 (65)
T ss_pred EECCEEE--EcCCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhH-hhhh-cCCCCEEEEEe
Confidence 3355544 45567788776544 699999999999999632222 2235 89999998874
No 114
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=72.90 E-value=22 Score=27.87 Aligned_cols=59 Identities=24% Similarity=0.299 Sum_probs=43.7
Q ss_pred eCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCC--cEE--EEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 63 RGPSQYEVHVPARSTFGDLKKAISEKTGLDPQE--QKV--LFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 63 ~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~--QKL--iykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
+...+|-| +..++.+|+.+.++.++++... -+| --.|.+.+|.+++.. +-++..+|++.
T Consensus 11 ~r~~k~GV---~A~sL~eL~~K~~~~l~l~~~~~~~~lvL~eDGT~VddEeyF~t--Lp~nT~l~~L~ 73 (80)
T cd06536 11 SRQKQHGV---AASSLEELRIKACESLGFDSSSAPITLVLAEDGTIVEDEDYFLC--LPPNTKFVLLA 73 (80)
T ss_pred CCCeeEeE---EcCCHHHHHHHHHHHhCCCCCCCceEEEEecCCcEEccHHHHhh--CCCCcEEEEEC
Confidence 34444544 3347999999999999998432 343 346888999999887 67899988885
No 115
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=72.68 E-value=27 Score=27.55 Aligned_cols=66 Identities=12% Similarity=0.212 Sum_probs=46.9
Q ss_pred EEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCC-CcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 57 IRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQ-EQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 57 I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~-~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
++|.-.+...+|-| +..++.+|+.+.++..+++.. ...|--.|.+.|+.+++.. +.++..+|++..
T Consensus 5 fkv~~~~r~~kkGV---~A~sL~EL~~K~~~~L~~~~~~~lvLeeDGT~Vd~EeyF~t--LpdnT~lm~L~~ 71 (81)
T cd06537 5 FRVCDHKRTVRKGL---TAASLQELLAKALETLLLSGVLTLVLEEDGTAVDSEDFFEL--LEDDTCLMVLEQ 71 (81)
T ss_pred eEEecCCCCeeEeE---EccCHHHHHHHHHHHhCCCCceEEEEecCCCEEccHHHHhh--CCCCCEEEEECC
Confidence 34443334445544 334799999999999999733 3334457888999999887 688999999863
No 116
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=71.44 E-value=17 Score=26.39 Aligned_cols=53 Identities=23% Similarity=0.334 Sum_probs=38.0
Q ss_pred EEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 69 EVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 69 ~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
.++++...|+.+|.+. .+++++...+.++|..... .....+-|++||+|-++.
T Consensus 7 ~~~~~~~~tv~~ll~~----l~~~~~~v~v~vN~~iv~~-~~~~~~~L~~gD~veii~ 59 (64)
T TIGR01683 7 PVEVEDGLTLAALLES----LGLDPRRVAVAVNGEIVPR-SEWDDTILKEGDRIEIVT 59 (64)
T ss_pred EEEcCCCCcHHHHHHH----cCCCCCeEEEEECCEEcCH-HHcCceecCCCCEEEEEE
Confidence 4556777889988776 4678887778889988432 223345689999998874
No 117
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=70.44 E-value=30 Score=27.11 Aligned_cols=60 Identities=13% Similarity=0.171 Sum_probs=43.5
Q ss_pred eCCeEEEEEecCCCcHHHHHHHHHHHhCCCCC-CcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 63 RGPSQYEVHVPARSTFGDLKKAISEKTGLDPQ-EQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 63 ~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~-~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
+...+|-| +..++.+|+.+.++.++++.. ...|--.|-+.++.+++.. +-++..+|+++.
T Consensus 11 ~rs~k~GV---~A~sL~eL~~K~~~~l~l~~~~~lvL~eDGT~Vd~EeyF~t--Lp~nt~l~vL~~ 71 (79)
T cd06538 11 DRSLRKGI---MADSLEDLLNKVLDALLLDCISSLVLDEDGTGVDTEEFFQA--LADNTVFMVLGK 71 (79)
T ss_pred CCceeEeE---EcCCHHHHHHHHHHHcCCCCccEEEEecCCcEEccHHHHhh--CCCCcEEEEECC
Confidence 33444444 334799999999999999632 2334456888999999887 678888888863
No 118
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=70.24 E-value=39 Score=26.45 Aligned_cols=63 Identities=8% Similarity=0.108 Sum_probs=43.8
Q ss_pred EEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 57 IRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 57 I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
+.+.|.-+|+.+.+ +...|+.+|=.. .++++...-+-++|.... .......-|++||+|-++.
T Consensus 17 ~~m~I~VNG~~~~~--~~~~tl~~LL~~----l~~~~~~vAVevNg~iVp-r~~w~~t~L~egD~IEIv~ 79 (84)
T PRK06083 17 VLITISINDQSIQV--DISSSLAQIIAQ----LSLPELGCVFAINNQVVP-RSEWQSTVLSSGDAISLFQ 79 (84)
T ss_pred ceEEEEECCeEEEc--CCCCcHHHHHHH----cCCCCceEEEEECCEEeC-HHHcCcccCCCCCEEEEEE
Confidence 34445546665554 567788877554 488888777789998853 3446667799999998874
No 119
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=68.56 E-value=20 Score=29.18 Aligned_cols=64 Identities=16% Similarity=0.135 Sum_probs=49.0
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHHhCCCCC--CcEEEEcCee---cCCch--------hhhhcCCCCCCEEEEEee
Q 022980 64 GPSQYEVHVPARSTFGDLKKAISEKTGLDPQ--EQKVLFRGKE---KEDNE--------HLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 64 g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~--~QKLiykGK~---ldd~~--------~L~~~GVKdgskL~Lv~~ 127 (289)
.+....+.+|.++|+.||-.+|...+.+++. -|-++++|.. ++..+ -|...|-.+.|.|..+|.
T Consensus 11 D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~l~~~~l~RvL~p~ErPl~IqkrlL~q~GY~~~D~l~~lGr 87 (97)
T cd01775 11 DGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLSLKKHDLSRVLRPTEKPLLIQKRLLLQVGYEERDRIEDIGR 87 (97)
T ss_pred CCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEEEEECCeeeecCCcCCcHHHHHHHHHHcCCCCCCcHHHhCc
Confidence 4456789999999999999999999999873 4555666643 55433 377888888888887764
No 120
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=67.53 E-value=16 Score=28.95 Aligned_cols=45 Identities=7% Similarity=0.134 Sum_probs=37.7
Q ss_pred EEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCC-CcEEEEc
Q 022980 57 IRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQ-EQKVLFR 101 (289)
Q Consensus 57 I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~-~QKLiyk 101 (289)
|+|++.|+|..+-..+++..|+.+|.+.+.+......+ --.+-|+
T Consensus 1 i~~K~~y~gdi~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~ 46 (83)
T cd06404 1 VRVKAAYNGDIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWI 46 (83)
T ss_pred CeEEEEecCcEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEE
Confidence 57888999999999999999999999999999999764 3344444
No 121
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=66.64 E-value=39 Score=24.19 Aligned_cols=58 Identities=14% Similarity=0.190 Sum_probs=36.6
Q ss_pred EEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 61 VARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 61 Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
|.-+++. +.++...|+.+|-+.+ +++ ....+.++|....... ....-+++||+|-++.
T Consensus 3 i~vNg~~--~~~~~~~tl~~ll~~l----~~~-~~~~v~vN~~~v~~~~-~~~~~L~~gD~vei~~ 60 (65)
T PRK06944 3 IQLNQQT--LSLPDGATVADALAAY----GAR-PPFAVAVNGDFVARTQ-HAARALAAGDRLDLVQ 60 (65)
T ss_pred EEECCEE--EECCCCCcHHHHHHhh----CCC-CCeEEEECCEEcCchh-cccccCCCCCEEEEEe
Confidence 3344544 4667778999887765 444 3456678888743221 2223389999998874
No 122
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=63.54 E-value=11 Score=28.62 Aligned_cols=48 Identities=31% Similarity=0.508 Sum_probs=35.1
Q ss_pred EEEecCCCcHHHHHHHHHHHhCCCCCCcEEEE-cCeecCCchhhhhcCCCCCCEEEEE
Q 022980 69 EVHVPARSTFGDLKKAISEKTGLDPQEQKVLF-RGKEKEDNEHLDVSGMKDKSKVLLL 125 (289)
Q Consensus 69 ~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiy-kGK~ldd~~~L~~~GVKdgskL~Lv 125 (289)
-|.+| .|+.+|.+..++++|+++. +++- .|.+.+|=.. |+||++|+++
T Consensus 21 vi~lP--~SleeLl~ia~~kfg~~~~--~v~~~dgaeIdDI~~-----IRDgD~L~~~ 69 (69)
T PF11834_consen 21 VIWLP--DSLEELLKIASEKFGFSAT--KVLNEDGAEIDDIDV-----IRDGDHLYLV 69 (69)
T ss_pred EEEcC--ccHHHHHHHHHHHhCCCce--EEEcCCCCEEeEEEE-----EEcCCEEEEC
Confidence 35555 5899999999999999743 4433 4666666444 6899999874
No 123
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=62.74 E-value=18 Score=26.38 Aligned_cols=58 Identities=28% Similarity=0.288 Sum_probs=43.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhCC--CCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 67 QYEVHVPARSTFGDLKKAISEKTGL--DPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 67 ~~~V~V~a~sTvgdLK~~I~e~TGv--pp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
...+.++...|+++|.+.|.....- ....-.+..+|+...+ . ..+.-|++||+|.++.
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~-~-~~~~~l~~gD~V~i~p 72 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD-D-GLDTPLKDGDEVAILP 72 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG-G-TTTSBEETTEEEEEEE
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC-c-cCCcCcCCCCEEEEEC
Confidence 5678889999999999999877632 2255677788988655 2 4455679999999884
No 124
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=61.16 E-value=21 Score=31.32 Aligned_cols=36 Identities=28% Similarity=0.343 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCCCCCchhhhhhHHHHHHHHHhhcCCC
Q 022980 176 VASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIE 212 (289)
Q Consensus 176 v~~~e~~~~~g~k~~eke~~~LsE~LM~~LLKLD~Ie 212 (289)
++.+|..+.+.+ ..+-.-..+.|++|..|.+||-|.
T Consensus 88 v~~ie~~Lr~~g-~~EV~S~~IG~~VM~~Lk~lD~VA 123 (156)
T COG1327 88 VSHIERQLRSSG-EREVPSKEIGELVMEELKKLDEVA 123 (156)
T ss_pred HHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHhcchhh
Confidence 555555554333 355566789999999999999995
No 125
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=59.13 E-value=45 Score=24.55 Aligned_cols=54 Identities=19% Similarity=0.232 Sum_probs=42.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHHhCCCC-CCcEEEE----cCee--cCCchhhhhcCCC
Q 022980 64 GPSQYEVHVPARSTFGDLKKAISEKTGLDP-QEQKVLF----RGKE--KEDNEHLDVSGMK 117 (289)
Q Consensus 64 g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp-~~QKLiy----kGK~--ldd~~~L~~~GVK 117 (289)
.+....+.|+..+|+.+|=..|+...||.. +---|.| .|.. ++.+.+|.....+
T Consensus 5 D~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~ 65 (80)
T PF09379_consen 5 DGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKK 65 (80)
T ss_dssp SEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBT
T ss_pred CCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCC
Confidence 356789999999999999999999999974 3456777 2333 7888888888777
No 126
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=57.26 E-value=52 Score=26.09 Aligned_cols=58 Identities=19% Similarity=0.278 Sum_probs=45.0
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcE-EEEcCeecCCchhhhhcCCCCCCEEEEE
Q 022980 65 PSQYEVHVPARSTFGDLKKAISEKTGLDPQEQK-VLFRGKEKEDNEHLDVSGMKDKSKVLLL 125 (289)
Q Consensus 65 ~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QK-LiykGK~ldd~~~L~~~GVKdgskL~Lv 125 (289)
..+|.+.|+..+|=-++|+.|+..+||.+.... +++.|+.+.... ..|-+.+-|-..+
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk~kr~~~---~~g~~~~~KKA~V 78 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKTKRFGR---RIGKRSDWKKAIV 78 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCceeeecc---cccccCCcEEEEE
Confidence 458999999999999999999999999998766 678888854322 2566666665544
No 127
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=56.29 E-value=77 Score=23.88 Aligned_cols=61 Identities=18% Similarity=0.307 Sum_probs=43.4
Q ss_pred EEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 59 INVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 59 V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
+++..+++ ++.++...|+.||-+. .|++++.--+.++|..... ....+.-+++||+|-++.
T Consensus 3 m~i~~ng~--~~e~~~~~tv~dLL~~----l~~~~~~vav~vNg~iVpr-~~~~~~~l~~gD~ievv~ 63 (68)
T COG2104 3 MTIQLNGK--EVEIAEGTTVADLLAQ----LGLNPEGVAVAVNGEIVPR-SQWADTILKEGDRIEVVR 63 (68)
T ss_pred EEEEECCE--EEEcCCCCcHHHHHHH----hCCCCceEEEEECCEEccc-hhhhhccccCCCEEEEEE
Confidence 44555554 4566666899998554 7999988888899998443 234556689999998774
No 128
>PF10768 FliX: Class II flagellar assembly regulator; InterPro: IPR019704 The FliX protein is possibly a transient component of the flagellum that is required for the assembly process. FliX may contribute to the targeting or assembly of the P- and L-ring protein monomers at the cell pole. The family carries a potential N-terminal signal sequence and at least one transmembrane domain indicating that it might function either in or in association with the cell membrane [].
Probab=55.06 E-value=22 Score=30.71 Aligned_cols=35 Identities=31% Similarity=0.505 Sum_probs=27.9
Q ss_pred HHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022980 204 ELLKLDGIEAEGEAKVQRKTEVRRVQKFHETLDNLKAI 241 (289)
Q Consensus 204 ~LLKLD~Ie~eGdaR~~RK~~VkrVQ~~Le~LD~lk~~ 241 (289)
.||.|=+|+ |.-..||..|+|=..+|+.||.||+-
T Consensus 55 aLLALQ~vd---d~~erRrRav~Rg~~lLD~Ld~Lk~~ 89 (139)
T PF10768_consen 55 ALLALQEVD---DPTERRRRAVRRGHDLLDVLDELKIG 89 (139)
T ss_pred HHHHHhhcc---ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777773 35556999999999999999999963
No 129
>PRK07440 hypothetical protein; Provisional
Probab=52.50 E-value=96 Score=23.13 Aligned_cols=61 Identities=11% Similarity=0.263 Sum_probs=42.1
Q ss_pred EEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 59 INVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 59 V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
++|.-+|+. +.++...|+.+|-+ ..+++++..-+-++|....- ......-|++||+|-++.
T Consensus 5 m~i~vNG~~--~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r-~~w~~~~L~~gD~IEIv~ 65 (70)
T PRK07440 5 ITLQVNGET--RTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHR-QFWEQTQVQPGDRLEIVT 65 (70)
T ss_pred eEEEECCEE--EEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCH-HHcCceecCCCCEEEEEE
Confidence 344445554 56677788887754 46888888888899988432 234555689999998774
No 130
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=52.06 E-value=28 Score=27.47 Aligned_cols=40 Identities=30% Similarity=0.488 Sum_probs=35.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhCCCCCCcE-EEEcCeec
Q 022980 66 SQYEVHVPARSTFGDLKKAISEKTGLDPQEQK-VLFRGKEK 105 (289)
Q Consensus 66 ~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QK-LiykGK~l 105 (289)
..|.+.|+..+|=-|+|+.|+...||.+...+ +++.|+.+
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~k 61 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKK 61 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCce
Confidence 57999999999999999999999999997765 57889874
No 131
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=51.89 E-value=36 Score=30.76 Aligned_cols=52 Identities=25% Similarity=0.398 Sum_probs=31.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhCCCCC-CcEE----EEcCee---cCCchhhhhcCCCCCC
Q 022980 67 QYEVHVPARSTFGDLKKAISEKTGLDPQ-EQKV----LFRGKE---KEDNEHLDVSGMKDKS 120 (289)
Q Consensus 67 ~~~V~V~a~sTvgdLK~~I~e~TGvpp~-~QKL----iykGK~---ldd~~~L~~~GVKdgs 120 (289)
.|.+-||.+.||+||-..|....+++.+ .++| ++.||. +..+.+|..+ .+..
T Consensus 35 ~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~ 94 (213)
T PF14533_consen 35 EYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYI 94 (213)
T ss_dssp EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TT
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcc
Confidence 5789999999999999999999999765 3444 467776 5667777776 4444
No 132
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=51.06 E-value=73 Score=25.10 Aligned_cols=33 Identities=9% Similarity=0.123 Sum_probs=28.0
Q ss_pred EEEEEeCCeEEEEEecCC-CcHHHHHHHHHHHhC
Q 022980 58 RINVARGPSQYEVHVPAR-STFGDLKKAISEKTG 90 (289)
Q Consensus 58 ~V~Vk~g~~~~~V~V~a~-sTvgdLK~~I~e~TG 90 (289)
.|++.+|+....+.++.. .|+.+|...++..+.
T Consensus 2 iiK~~~g~DiR~~~~~~~~~t~~~L~~~v~~~F~ 35 (81)
T cd06401 2 ILKAQLGDDIRRIPIHNEDITYDELLLMMQRVFR 35 (81)
T ss_pred eEEEEeCCeEEEEeccCccccHHHHHHHHHHHhc
Confidence 467778988888999875 599999999998877
No 133
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=50.66 E-value=95 Score=22.57 Aligned_cols=58 Identities=12% Similarity=0.086 Sum_probs=38.6
Q ss_pred EeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 62 ARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 62 k~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
.-+|+.+ +++...|+.+|-+. .++.+....+-++|..... ......-|++||+|-++.
T Consensus 4 ~vNg~~~--~~~~~~tl~~ll~~----l~~~~~~vaVavN~~iv~r-~~w~~~~L~~gD~Ieii~ 61 (66)
T PRK08053 4 LFNDQPM--QCAAGQTVHELLEQ----LNQLQPGAALAINQQIIPR-EQWAQHIVQDGDQILLFQ 61 (66)
T ss_pred EECCeEE--EcCCCCCHHHHHHH----cCCCCCcEEEEECCEEeCh-HHcCccccCCCCEEEEEE
Confidence 3345544 45677788888765 4666666777788888432 223444589999998874
No 134
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=50.53 E-value=40 Score=26.68 Aligned_cols=50 Identities=14% Similarity=0.221 Sum_probs=38.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHHhCCCCC---CcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 64 GPSQYEVHVPARSTFGDLKKAISEKTGLDPQ---EQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 64 g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~---~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
.|..|.+.+.+...+.+|+..|+.+.|+... .-.|.|- | -+|+.|+|.-+
T Consensus 9 ~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Yl----D----------DEgD~VllT~D 61 (86)
T cd06409 9 KGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYV----D----------DEGDIVLITSD 61 (86)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEE----c----------CCCCEEEEecc
Confidence 4678999999999999999999999999974 4455553 3 24778777653
No 135
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=48.77 E-value=48 Score=25.72 Aligned_cols=58 Identities=16% Similarity=0.201 Sum_probs=45.4
Q ss_pred EEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCee-cCCchhhhhcCCCCCCEEEEE
Q 022980 68 YEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKE-KEDNEHLDVSGMKDKSKVLLL 125 (289)
Q Consensus 68 ~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~-ldd~~~L~~~GVKdgskL~Lv 125 (289)
+-+.||..+.|..+-+..++.+.||+..=-+|-+... .....+-...=+|.|+.|-|+
T Consensus 18 kv~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGseLrli 76 (76)
T PF03671_consen 18 KVISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGSELRLI 76 (76)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-SEEEEE
T ss_pred eEEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCcEeeeC
Confidence 3589999999999999999999999988788877655 777777777778899988775
No 136
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=48.70 E-value=80 Score=24.01 Aligned_cols=46 Identities=22% Similarity=0.328 Sum_probs=37.6
Q ss_pred EEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCee
Q 022980 58 RINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKE 104 (289)
Q Consensus 58 ~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ 104 (289)
+|..-+ |+...|.|-+..|+.|+=..+++.-|+.|+.--|.+.|..
T Consensus 3 ~V~LPn-g~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~~~ 48 (72)
T cd01760 3 RVYLPN-GQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLGLD 48 (72)
T ss_pred EEECcC-CCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEecCC
Confidence 344444 4678899999999999999999999999998888777543
No 137
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=48.55 E-value=1.1e+02 Score=22.57 Aligned_cols=59 Identities=15% Similarity=0.144 Sum_probs=40.0
Q ss_pred EEeCCeEEEEEecCC-CcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 61 VARGPSQYEVHVPAR-STFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 61 Vk~g~~~~~V~V~a~-sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
|.-+|+.+ +++.. .|+.+|-+ ..|++++..-+-++|..... .....+-|++||+|-++.
T Consensus 3 I~vNG~~~--~~~~~~~tv~~lL~----~l~~~~~~vav~vN~~iv~r-~~w~~~~L~~gD~iEIv~ 62 (67)
T PRK07696 3 LKINGNQI--EVPESVKTVAELLT----HLELDNKIVVVERNKDILQK-DDHTDTSVFDGDQIEIVT 62 (67)
T ss_pred EEECCEEE--EcCCCcccHHHHHH----HcCCCCCeEEEEECCEEeCH-HHcCceecCCCCEEEEEE
Confidence 34456655 45554 57777654 46888887778899988432 335566689999998774
No 138
>PRK12787 fliX flagellar assembly regulator FliX; Reviewed
Probab=48.37 E-value=28 Score=30.07 Aligned_cols=35 Identities=37% Similarity=0.546 Sum_probs=27.0
Q ss_pred HHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022980 204 ELLKLDGIEAEGEAKVQRKTEVRRVQKFHETLDNLKAI 241 (289)
Q Consensus 204 ~LLKLD~Ie~eGdaR~~RK~~VkrVQ~~Le~LD~lk~~ 241 (289)
.||.|-+|+ +.=..||-.|+|=+.+|+.||.||+-
T Consensus 53 ALLALQ~vd---d~~eRRrRav~Rg~~~LD~Ld~Lk~a 87 (138)
T PRK12787 53 ALLALQGVE---DPTERRRRSVRRGETALDVLDELKIG 87 (138)
T ss_pred HHHHHhccc---chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666663 44445889999999999999999963
No 139
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=48.03 E-value=25 Score=27.49 Aligned_cols=52 Identities=21% Similarity=0.396 Sum_probs=30.8
Q ss_pred CCcHHHHHHHH-HHHhCCCC-C---CcEEEEcCee----cCCchhhhhcCCCCCCEEEEEe
Q 022980 75 RSTFGDLKKAI-SEKTGLDP-Q---EQKVLFRGKE----KEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 75 ~sTvgdLK~~I-~e~TGvpp-~---~QKLiykGK~----ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
..|+++|-+.| ....|+.. . ..++||..-. .....+|+++||++|+.|.+.-
T Consensus 8 ~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~D 68 (87)
T PF14732_consen 8 KMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVDD 68 (87)
T ss_dssp T-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEEE
T ss_pred hCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEEE
Confidence 45999998864 44677654 2 4567776544 3345689999999999888753
No 140
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=45.84 E-value=42 Score=33.47 Aligned_cols=70 Identities=20% Similarity=0.307 Sum_probs=50.8
Q ss_pred CCCCcEEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCC-CcEEE--EcCee-cCCchhhhhcCCCCCCEE
Q 022980 52 SGGPVIRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQ-EQKVL--FRGKE-KEDNEHLDVSGMKDKSKV 122 (289)
Q Consensus 52 ~~~~~I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~-~QKLi--ykGK~-ldd~~~L~~~GVKdgskL 122 (289)
.+..+|+|+...| .+.-..++-..||.|++.-|+..-.-.+. -+-|+ |--|. -|++.||.+.||.+...|
T Consensus 303 ~PtTsIQIRLanG-~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv 376 (380)
T KOG2086|consen 303 EPTTSIQIRLANG-TRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV 376 (380)
T ss_pred CCcceEEEEecCC-ceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence 3445677777766 56667888889999999999986544433 45555 34566 578899999999886544
No 141
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=45.65 E-value=1.9e+02 Score=24.58 Aligned_cols=68 Identities=13% Similarity=0.194 Sum_probs=44.2
Q ss_pred EEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCC-CcEEEEc--C----eecCCchhhhhcCCC-CCCEEEEE
Q 022980 57 IRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQ-EQKVLFR--G----KEKEDNEHLDVSGMK-DKSKVLLL 125 (289)
Q Consensus 57 I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~-~QKLiyk--G----K~ldd~~~L~~~GVK-dgskL~Lv 125 (289)
++|..- +|....+.+.+.+|+.++-..|+...||+.. .--|.+. + ..++....|.....+ ...++.+-
T Consensus 6 ~~V~l~-dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~fr 81 (207)
T smart00295 6 LKVYLL-DGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYFR 81 (207)
T ss_pred EEEEec-CCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEEE
Confidence 444444 4567789999999999999999999999532 2223332 1 235666677776665 34444443
No 142
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=45.64 E-value=63 Score=24.07 Aligned_cols=38 Identities=18% Similarity=0.345 Sum_probs=20.3
Q ss_pred hHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 022980 197 SAELLMKELLKLDGIEAEGEAKVQRKTEVRRVQKFHETLDNLK 239 (289)
Q Consensus 197 LsE~LM~~LLKLD~Ie~eGdaR~~RK~~VkrVQ~~Le~LD~lk 239 (289)
|.+.|.+.|-.+.... | .+|+.+|++|+..|+.++.+-
T Consensus 4 l~~~i~~~l~~~~~~~--~---~~r~~~i~~~e~~l~ea~~~l 41 (79)
T PF05008_consen 4 LTAEIKSKLERIKNLS--G---EQRKSLIREIERDLDEAEELL 41 (79)
T ss_dssp HHHHHHHHHHHGGGS---C---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccC--h---HHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444222 2 367777777777776665544
No 143
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=45.45 E-value=57 Score=25.50 Aligned_cols=58 Identities=14% Similarity=0.149 Sum_probs=50.0
Q ss_pred EEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCee-cCCchhhhhcCCCCCCEEEEEe
Q 022980 69 EVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKE-KEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 69 ~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~-ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
.++||..+.|..+-+..++.+.||+..--+|-+... .....+-..+=+|.|+.|-|+.
T Consensus 19 vlsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvflkhgselrliP 77 (82)
T cd01766 19 VLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIP 77 (82)
T ss_pred EEeccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccceeeecCCEeeecc
Confidence 479999999999999999999999987777777666 8888888888899999999883
No 144
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=44.38 E-value=91 Score=26.31 Aligned_cols=43 Identities=14% Similarity=0.284 Sum_probs=32.4
Q ss_pred EecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhh
Q 022980 71 HVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDV 113 (289)
Q Consensus 71 ~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~ 113 (289)
-||.+.||+++...|....+++++..=|+.++.....+.++.+
T Consensus 46 lVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~ 88 (121)
T PTZ00380 46 ALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGD 88 (121)
T ss_pred EcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHH
Confidence 5999999999999999999999997333344544555555554
No 145
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=43.63 E-value=1.1e+02 Score=31.18 Aligned_cols=75 Identities=15% Similarity=0.214 Sum_probs=50.6
Q ss_pred EEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCC--CCCcEEEEc----Cee--cCCchhhhhcCCCCCCEEEEE-eeCC
Q 022980 59 INVARGPSQYEVHVPARSTFGDLKKAISEKTGLD--PQEQKVLFR----GKE--KEDNEHLDVSGMKDKSKVLLL-EELT 129 (289)
Q Consensus 59 V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvp--p~~QKLiyk----GK~--ldd~~~L~~~GVKdgskL~Lv-~~~~ 129 (289)
+++......+.+++..++++|.|-.+|-.-..+. |++..+.-+ |-. +..+.++.++|+++|+-|.|- -+.+
T Consensus 3 ~rfRsk~G~~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~ysd~~ 82 (571)
T COG5100 3 FRFRSKEGQRRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEYSDIA 82 (571)
T ss_pred EEEecCCCceeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEecccc
Confidence 3444433468899999999999988877665543 554444322 332 456789999999999998876 3444
Q ss_pred CCCC
Q 022980 130 NKEK 133 (289)
Q Consensus 130 s~e~ 133 (289)
+.++
T Consensus 83 snne 86 (571)
T COG5100 83 SNNE 86 (571)
T ss_pred cccc
Confidence 4443
No 146
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=41.64 E-value=64 Score=25.26 Aligned_cols=44 Identities=16% Similarity=0.356 Sum_probs=36.3
Q ss_pred EEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCe
Q 022980 57 IRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGK 103 (289)
Q Consensus 57 I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK 103 (289)
++|+.-|.|++.-|.+|..--+.||.+.+...+|-+-+ |.|-.+
T Consensus 1 vRiKfE~~gEKRIi~f~RPvkf~dl~~kv~~afGq~md---l~ytn~ 44 (79)
T cd06405 1 VRIKFEHNGEKRIIQFPRPVKFKDLQQKVTTAFGQPMD---LHYTNN 44 (79)
T ss_pred CeEEEEecCceEEEecCCCccHHHHHHHHHHHhCCeee---EEEecc
Confidence 46777789999999999999999999999999996543 555444
No 147
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=40.06 E-value=43 Score=25.78 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=26.9
Q ss_pred EeCCeEEEEEecCCC-cHHHHHHHHHHHhCCC--CCCcEEEEcC
Q 022980 62 ARGPSQYEVHVPARS-TFGDLKKAISEKTGLD--PQEQKVLFRG 102 (289)
Q Consensus 62 k~g~~~~~V~V~a~s-TvgdLK~~I~e~TGvp--p~~QKLiykG 102 (289)
+.......|.++... +|+|||..|.+..++. .+..-.||..
T Consensus 6 kS~k~~~~i~fdG~~Isv~dLKr~I~~~~~lg~~~dfdL~i~na 49 (74)
T PF08783_consen 6 KSQKDYDTITFDGTSISVFDLKREIIEKKKLGKGTDFDLVIYNA 49 (74)
T ss_dssp TT-SSEEEEEESSSEEEHHHHHHHHHHHHT---TTTEEEEEEES
T ss_pred cccCCccEEEECCCeeEHHHHHHHHHHHhCCCcCCcCCEEEECC
Confidence 334455678888775 9999999998887773 3334456653
No 148
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=40.01 E-value=85 Score=23.38 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=27.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhCCC--CCCcEE
Q 022980 67 QYEVHVPARSTFGDLKKAISEKTGLD--PQEQKV 98 (289)
Q Consensus 67 ~~~V~V~a~sTvgdLK~~I~e~TGvp--p~~QKL 98 (289)
...|.|+..+|..+|-.++.+.+|++ |..-.|
T Consensus 18 ~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L 51 (93)
T PF00788_consen 18 YKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCL 51 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEE
Confidence 67899999999999999999999993 344445
No 149
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=39.72 E-value=1e+02 Score=24.37 Aligned_cols=59 Identities=19% Similarity=0.230 Sum_probs=35.8
Q ss_pred eEEEEEec--CCCcHHHHHHHHHHHhCCCCCCcEEEEc-Cee------cC---Cchhh--hhcCCCCCCEEEEEe
Q 022980 66 SQYEVHVP--ARSTFGDLKKAISEKTGLDPQEQKVLFR-GKE------KE---DNEHL--DVSGMKDKSKVLLLE 126 (289)
Q Consensus 66 ~~~~V~V~--a~sTvgdLK~~I~e~TGvpp~~QKLiyk-GK~------ld---d~~~L--~~~GVKdgskL~Lv~ 126 (289)
+.|.+.++ ..+||++|=+.|++.. ++.+..|+.. |+. +- |-..| .++-|++||.|.++-
T Consensus 17 ~~~~~~~~~~~~~tV~dll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P 89 (94)
T cd01764 17 KEHHVVLDGEKPVTVGDLLDYVASNL--LEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFIS 89 (94)
T ss_pred eEEEEeccCCCCCcHHHHHHHHHHhC--chhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEEC
Confidence 44666666 4679999999998776 3334444432 211 11 12233 245689999999874
No 150
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=39.41 E-value=81 Score=32.94 Aligned_cols=76 Identities=20% Similarity=0.282 Sum_probs=47.2
Q ss_pred CCCcEEEEEEe---CCeEEEEEecCCCcHHHHHHHHHHH--hCCC------CCCcEEEEc-C---ee-cCCc--------
Q 022980 53 GGPVIRINVAR---GPSQYEVHVPARSTFGDLKKAISEK--TGLD------PQEQKVLFR-G---KE-KEDN-------- 108 (289)
Q Consensus 53 ~~~~I~V~Vk~---g~~~~~V~V~a~sTvgdLK~~I~e~--TGvp------p~~QKLiyk-G---K~-ldd~-------- 108 (289)
...+++|.|.. +...++|.|=..+||.++|++|-+. -+.| +++.-|-++ | .. +.|.
T Consensus 186 d~~~ltl~v~~~~~~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~ 265 (539)
T PF08337_consen 186 DYKTLTLNVVPQEEGSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEG 265 (539)
T ss_dssp -S-EEEEEEECTTTSSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEET
T ss_pred ceEEEEEEEEecCCCCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCC
Confidence 34568888664 3456889999999999999998765 3333 233444332 2 21 3222
Q ss_pred -----hhhhhcCCCCCCEEEEEeeC
Q 022980 109 -----EHLDVSGMKDKSKVLLLEEL 128 (289)
Q Consensus 109 -----~~L~~~GVKdgskL~Lv~~~ 128 (289)
.||..|||.||+.|.|+...
T Consensus 266 ~wkrLNTL~HY~V~dga~vaLv~k~ 290 (539)
T PF08337_consen 266 GWKRLNTLAHYKVPDGATVALVPKQ 290 (539)
T ss_dssp TEEE--BHHHHT--TTEEEEEEES-
T ss_pred CceEeccHhhcCCCCCceEEEeecc
Confidence 26999999999999999653
No 151
>PRK08453 fliD flagellar capping protein; Validated
Probab=39.34 E-value=41 Score=35.96 Aligned_cols=32 Identities=19% Similarity=0.421 Sum_probs=28.2
Q ss_pred EEEEEEeCCeEEEEEecCCCcHHHHHHHHHHH
Q 022980 57 IRINVARGPSQYEVHVPARSTFGDLKKAISEK 88 (289)
Q Consensus 57 I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~ 88 (289)
..+.+.++|+.|.|+|++..|+.+|+.+|=..
T Consensus 129 ~~~~~~~~G~~~sIdi~~gtTL~~L~~~INd~ 160 (673)
T PRK08453 129 TTLKFYTQGKDYAIDIKAGMTLGDVAQSITDA 160 (673)
T ss_pred ceEEEEECCEEEEEEeCCCCcHHHHHHHhcCC
Confidence 45777788999999999999999999999853
No 152
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=39.12 E-value=1.8e+02 Score=22.96 Aligned_cols=65 Identities=23% Similarity=0.293 Sum_probs=35.5
Q ss_pred EEEEEEe---CC-eEEEEEecCCCcHHHHHHH---HHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 57 IRINVAR---GP-SQYEVHVPARSTFGDLKKA---ISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 57 I~V~Vk~---g~-~~~~V~V~a~sTvgdLK~~---I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
|+|.|.| .. ..+.++||+.+|+.+--+. +...-++....+++=.=||....+. -+++||+|-+-.
T Consensus 1 i~VeV~yA~p~~q~~~~l~vp~GtTv~~Ai~~Sgi~~~~p~idl~~~~vGIfGk~~~~d~-----~L~~GDRVEIYR 72 (84)
T PF03658_consen 1 IRVEVAYALPERQVILTLEVPEGTTVAQAIEASGILEQFPEIDLEKNKVGIFGKLVKLDT-----VLRDGDRVEIYR 72 (84)
T ss_dssp EEEEEEEEETTCEEEEEEEEETT-BHHHHHHHHTHHHH-TT--TTTSEEEEEE-S--TT------B--TT-EEEEE-
T ss_pred CEEEEEEECCCeEEEEEEECCCcCcHHHHHHHcCchhhCcccCcccceeeeeeeEcCCCC-----cCCCCCEEEEec
Confidence 5677776 22 3357999999999886553 4445567777888833355533333 369999998764
No 153
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=38.73 E-value=76 Score=25.38 Aligned_cols=58 Identities=17% Similarity=0.236 Sum_probs=40.5
Q ss_pred EEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEE
Q 022980 68 YEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLL 125 (289)
Q Consensus 68 ~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv 125 (289)
...+++-..+++.||..|+.+.|+.-..-.+...+..++++.+|-+-||+-.-.|-+.
T Consensus 5 I~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQln 62 (88)
T PF11620_consen 5 IMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLN 62 (88)
T ss_dssp EEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEE
T ss_pred EEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEE
Confidence 4456667788999999999999999988888888888999999999999877776554
No 154
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=37.68 E-value=3.2e+02 Score=30.52 Aligned_cols=76 Identities=21% Similarity=0.279 Sum_probs=51.1
Q ss_pred CeEEEEEecCCC-cHHHHHHHHHHHhCCCCCCcEEEEcCee-cCCchhhhhcCC--CCCCEEEEEeeCCCCCCCCCcCCC
Q 022980 65 PSQYEVHVPARS-TFGDLKKAISEKTGLDPQEQKVLFRGKE-KEDNEHLDVSGM--KDKSKVLLLEELTNKEKKPKEVKD 140 (289)
Q Consensus 65 ~~~~~V~V~a~s-TvgdLK~~I~e~TGvpp~~QKLiykGK~-ldd~~~L~~~GV--KdgskL~Lv~~~~s~e~k~~~~~~ 140 (289)
|+...+++.+.. ||.+||.+|+...|+....|.++-.|.. .+-+..|..|.- .+-+-|++........+++..+++
T Consensus 4 GqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~StaGTdTnPiffFnkem~lcde~~a~pd 83 (1424)
T KOG4572|consen 4 GQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEISTAGTDTNPIFFFNKEMGLCDENHAGPD 83 (1424)
T ss_pred CceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhccccCCCCceEEeehhhccccCCCCCCC
Confidence 455566666554 8999999999999999999999988877 666666666542 344557766433333333333433
No 155
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.45 E-value=12 Score=38.15 Aligned_cols=73 Identities=15% Similarity=0.180 Sum_probs=57.2
Q ss_pred CcEEEEEEe--CCeE-EEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 55 PVIRINVAR--GPSQ-YEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 55 ~~I~V~Vk~--g~~~-~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
.++.|+... ++.+ ..+...-.-|-.+|...|+..+||+....|.|-.||.+.-..+|.+-|++.+.++|++..
T Consensus 36 at~~Vrlv~~~k~~~m~l~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~~mv~~~ 111 (568)
T KOG2561|consen 36 ATESVRLVFAGKGDRMNLKKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQELMVAVG 111 (568)
T ss_pred cceeeEeccccccchhhhhhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhhHHHHHhc
Confidence 345555443 3322 234444455788999999999999999999999999999999999999999999887743
No 156
>smart00455 RBD Raf-like Ras-binding domain.
Probab=37.28 E-value=1.5e+02 Score=22.18 Aligned_cols=38 Identities=29% Similarity=0.316 Sum_probs=33.8
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcC
Q 022980 65 PSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRG 102 (289)
Q Consensus 65 ~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykG 102 (289)
++...|.+-+..|+.|+=..+.+.-|+.|+.-.|...|
T Consensus 9 ~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 9 NQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 46788999999999999999999999999988887755
No 157
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=35.88 E-value=1.3e+02 Score=26.45 Aligned_cols=41 Identities=20% Similarity=0.150 Sum_probs=35.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhCCCCCCcE-EEEcCeecC
Q 022980 66 SQYEVHVPARSTFGDLKKAISEKTGLDPQEQK-VLFRGKEKE 106 (289)
Q Consensus 66 ~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QK-LiykGK~ld 106 (289)
..|.+.|+..+|=-++|..|+..+||.+.... ++..|+.+.
T Consensus 23 N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~~~K~KR 64 (158)
T PRK12280 23 NVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNVDKKPKR 64 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEecCCcccc
Confidence 57999999999999999999999999998766 456776643
No 158
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=34.53 E-value=63 Score=26.64 Aligned_cols=38 Identities=26% Similarity=0.397 Sum_probs=21.1
Q ss_pred hcCCCCchhHHHHHHH---HHHHHHHHHH----HHHHHHhhcCCC
Q 022980 208 LDGIEAEGEAKVQRKT---EVRRVQKFHE----TLDNLKAINSNP 245 (289)
Q Consensus 208 LD~Ie~eGdaR~~RK~---~VkrVQ~~Le----~LD~lk~~n~~~ 245 (289)
||+++++.++|..+-- +|-++|+.|+ ++|.+|..|-+.
T Consensus 45 l~a~e~~~d~~EEKaRlItQVLELQnTLdDLSqRVdsVKEEnLKL 89 (120)
T KOG3650|consen 45 LDAVEAENDVEEEKARLITQVLELQNTLDDLSQRVDSVKEENLKL 89 (120)
T ss_pred ccccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 7888877765544444 4555555554 234555555443
No 159
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=34.16 E-value=80 Score=25.50 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=34.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhCCCCCCcE-EEEcCee
Q 022980 66 SQYEVHVPARSTFGDLKKAISEKTGLDPQEQK-VLFRGKE 104 (289)
Q Consensus 66 ~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QK-LiykGK~ 104 (289)
..|.+.|.+.+|=-++|+.+++.+||-+.... |+.+|+.
T Consensus 22 nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~~k~k~ 61 (94)
T COG0089 22 NKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNTKGKT 61 (94)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEeCCcc
Confidence 57999999999999999999999999998766 5677775
No 160
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=33.87 E-value=1.4e+02 Score=29.23 Aligned_cols=59 Identities=15% Similarity=0.174 Sum_probs=42.1
Q ss_pred EEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 61 VARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 61 Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
|.-+|+. ++++...|+.+|-.. .+++++..-+.++|..... .....+-|++||+|-++.
T Consensus 3 I~VNGk~--~el~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVpr-~~w~~t~LkeGD~IEII~ 61 (326)
T PRK11840 3 IRLNGEP--RQVPAGLTIAALLAE----LGLAPKKVAVERNLEIVPR-SEYGQVALEEGDELEIVH 61 (326)
T ss_pred EEECCEE--EecCCCCcHHHHHHH----cCCCCCeEEEEECCEECCH-HHcCccccCCCCEEEEEE
Confidence 4445554 455677788877554 6999999999999998532 234555689999998774
No 161
>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.
Probab=33.84 E-value=2.3e+02 Score=22.12 Aligned_cols=63 Identities=19% Similarity=0.284 Sum_probs=43.3
Q ss_pred EEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEE--EEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 58 RINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKV--LFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 58 ~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKL--iykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
+|+-.+...+|-| +..++.+|+.+.++.+.++...-+| --.|-+.. ++++.. +.++..+|++.
T Consensus 6 kV~~~~rs~k~GV---~A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGTeVt-EeyF~t--Lp~nT~lmvL~ 70 (77)
T cd06535 6 KIRSLNSAQKYGV---AAKNLKELLRKGCRLLQLPCAGSRLCLYEDGTEVT-EEYFPT--LPDNTELVLLT 70 (77)
T ss_pred EEecCCCCeeEeE---EcCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEeh-HHHHhc--CCCCcEEEEEc
Confidence 3433344445544 3347999999999999999654444 34677774 677765 67888888875
No 162
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=32.86 E-value=1.6e+02 Score=28.39 Aligned_cols=70 Identities=11% Similarity=0.128 Sum_probs=53.2
Q ss_pred CcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCee------cCCchhhhhcCCCCCCEEEEE
Q 022980 55 PVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKE------KEDNEHLDVSGMKDKSKVLLL 125 (289)
Q Consensus 55 ~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~------ldd~~~L~~~GVKdgskL~Lv 125 (289)
..-+|-|++ .|++....|++..|+..|+..|...+|..+.= -.++.|-. -|...+|..+|+-+.+.|+|-
T Consensus 209 s~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P-~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil~ 285 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDP-YSFHTGFPRVTFTEDDELKPLQELDLVPSAVLILE 285 (290)
T ss_pred cceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCC-eeeecCCCceecccccccccHHHhccccchheecc
Confidence 456666666 67899999999999999999999999987621 23444432 244678999999999988763
No 163
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=32.27 E-value=47 Score=29.98 Aligned_cols=29 Identities=21% Similarity=0.382 Sum_probs=19.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhCCCCC
Q 022980 66 SQYEVHVPARSTFGDLKKAISEKTGLDPQ 94 (289)
Q Consensus 66 ~~~~V~V~a~sTvgdLK~~I~e~TGvpp~ 94 (289)
.-+-+.|.+..||+++|++|...+||+..
T Consensus 133 iPF~f~v~~gE~f~~tK~Rl~~rlgv~~k 161 (213)
T PF14533_consen 133 IPFLFVVKPGETFSDTKERLQKRLGVSDK 161 (213)
T ss_dssp EEEEEEEETT--HHHHHHHHHHHH---HH
T ss_pred CCEEEEeeCCCcHHHHHHHHHHHhCCChh
Confidence 34456777899999999999999999964
No 164
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=28.89 E-value=3.2e+02 Score=23.62 Aligned_cols=45 Identities=18% Similarity=0.141 Sum_probs=30.5
Q ss_pred CCchhhhhhHHHHHHHHHhhcCCCCch---hHHHHHHHHHHHHHHHHH
Q 022980 189 VPSEELDTSAELLMKELLKLDGIEAEG---EAKVQRKTEVRRVQKFHE 233 (289)
Q Consensus 189 ~~eke~~~LsE~LM~~LLKLD~Ie~eG---daR~~RK~~VkrVQ~~Le 233 (289)
...++.+.|+-.|...|.+||.-.-.. .+..+=...|.-+++|++
T Consensus 92 ~dqk~a~~L~~~Lf~~L~~LD~AA~~kd~~~a~k~Y~~av~~~dafl~ 139 (142)
T TIGR03042 92 KDQKEALALAKELKDDLEKLDEAARLQDGPQAQKAYQKAAADFDAYLD 139 (142)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh
Confidence 456789999999999999999865444 334444445555555554
No 165
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=27.33 E-value=2e+02 Score=21.49 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=25.8
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHHhCCC
Q 022980 65 PSQYEVHVPARSTFGDLKKAISEKTGLD 92 (289)
Q Consensus 65 ~~~~~V~V~a~sTvgdLK~~I~e~TGvp 92 (289)
+....|.|+.++|..++-..+.+..|+.
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~ 39 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLD 39 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCc
Confidence 4567899999999999999999999998
No 166
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=27.11 E-value=1e+02 Score=25.79 Aligned_cols=40 Identities=25% Similarity=0.258 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhhh
Q 022980 158 ALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTS 197 (289)
Q Consensus 158 a~~aI~~i~~evd~La~~v~~~e~~~~~g~k~~eke~~~L 197 (289)
+..++..+..+++.++.++..+|..+-+..-..++|+..|
T Consensus 82 ~~~~l~~~~~~~~~~e~Rl~~mE~yVTS~~f~l~ref~~L 121 (121)
T TIGR02978 82 PRQALREVKREFRDLERRLRNMERYVTSDTFRLRREFRNL 121 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHhcC
Confidence 4456788888999999999999999987766667776653
No 167
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=26.91 E-value=1.5e+02 Score=23.00 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 022980 160 QAIAGVRAEVDKLSERVASLEVAVN 184 (289)
Q Consensus 160 ~aI~~i~~evd~La~~v~~~e~~~~ 184 (289)
..|..+..+||.|..+|..++.+.+
T Consensus 11 ~dIk~vd~KVdaLq~~V~~l~~~~~ 35 (75)
T PF05531_consen 11 QDIKAVDDKVDALQTQVDDLESNLP 35 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3556666778888777877765553
No 168
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=26.41 E-value=1.2e+02 Score=25.49 Aligned_cols=40 Identities=15% Similarity=0.131 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhhh
Q 022980 158 ALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTS 197 (289)
Q Consensus 158 a~~aI~~i~~evd~La~~v~~~e~~~~~g~k~~eke~~~L 197 (289)
+..++..+..+++.++.++..+|..+-+..-..+.|+..|
T Consensus 79 ~~~~l~~~~~~~~~~e~Rlr~mE~yVTS~~f~l~ref~~L 118 (118)
T PRK10697 79 SSELLDEVDRELAAGEQRLREMERYVTSDTFTLRSRFRQL 118 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHhcC
Confidence 3456778888999999999999999987766666666553
No 169
>CHL00030 rpl23 ribosomal protein L23
Probab=25.58 E-value=1.3e+02 Score=24.00 Aligned_cols=40 Identities=23% Similarity=0.202 Sum_probs=34.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhCCCCCCcE-EEEcCeec
Q 022980 66 SQYEVHVPARSTFGDLKKAISEKTGLDPQEQK-VLFRGKEK 105 (289)
Q Consensus 66 ~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QK-LiykGK~l 105 (289)
..|.+.|+..+|=.++|+.|+..+||.+.... ++..|+.+
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~~k~k 60 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLPRKKR 60 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcCCCcc
Confidence 58999999999999999999999999988665 55677764
No 170
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=24.67 E-value=1.9e+02 Score=26.77 Aligned_cols=44 Identities=11% Similarity=0.419 Sum_probs=32.3
Q ss_pred cEEEEEEe----CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEE
Q 022980 56 VIRINVAR----GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVL 99 (289)
Q Consensus 56 ~I~V~Vk~----g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLi 99 (289)
.+.|+++- ....+.+.++...|..+|-+.|++..|+.|...||.
T Consensus 176 rv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~ 223 (249)
T PF12436_consen 176 RVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF 223 (249)
T ss_dssp EEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred eEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence 36666664 234789999999999999999999999999988874
No 171
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=24.14 E-value=1.6e+02 Score=22.55 Aligned_cols=48 Identities=17% Similarity=0.266 Sum_probs=28.6
Q ss_pred CCcHHHHHHHHHHHhC---CCCCCcEEE-EcC-eecCCchhhhhcCCCCCCEEEEEe
Q 022980 75 RSTFGDLKKAISEKTG---LDPQEQKVL-FRG-KEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 75 ~sTvgdLK~~I~e~TG---vpp~~QKLi-ykG-K~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
..|+++|.+.+..+.. ..-..+.++ ... ....+.. +-|++||.|.++.
T Consensus 27 ~~tv~~L~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----t~L~dGDeVa~~P 79 (84)
T COG1977 27 GATVGELEELLPKEGERWLLALEDNIVVNAANNEFLVGLD----TPLKDGDEVAFFP 79 (84)
T ss_pred HHHHHHHHHHHHhhhhhHHhccCccceEEeeeceeecccc----ccCCCCCEEEEeC
Confidence 4599999999876665 222223322 222 3343332 2379999999884
No 172
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=23.97 E-value=2.4e+02 Score=22.51 Aligned_cols=46 Identities=20% Similarity=0.194 Sum_probs=34.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHHhCCC-CCCcEEE-E-cCee--cCCch
Q 022980 64 GPSQYEVHVPARSTFGDLKKAISEKTGLD-PQEQKVL-F-RGKE--KEDNE 109 (289)
Q Consensus 64 g~~~~~V~V~a~sTvgdLK~~I~e~TGvp-p~~QKLi-y-kGK~--ldd~~ 109 (289)
|-...++-|+++.|..+|-.++++++.|. |+.-.|+ | .|.. +.|++
T Consensus 12 gct~KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~vdg~~~qLadd~ 62 (87)
T cd01776 12 GCTGKTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLFLFVEETWQQLAPDT 62 (87)
T ss_pred CceeeeeecCCCCcHHHHHHHHHHHhccCChhheeEEEEECCcEEEcCccc
Confidence 33456899999999999999999999996 6666653 3 3443 55544
No 173
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=23.95 E-value=1.5e+02 Score=25.98 Aligned_cols=55 Identities=11% Similarity=0.148 Sum_probs=39.5
Q ss_pred CCcEEEEEEeCCeEEEEEecC-CCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhc
Q 022980 54 GPVIRINVARGPSQYEVHVPA-RSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVS 114 (289)
Q Consensus 54 ~~~I~V~Vk~g~~~~~V~V~a-~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~ 114 (289)
+..+.++|+-|. +-+++.. .+.+..+++.+.+.+-.+-+ ++.|+......|+++|
T Consensus 65 g~~veL~V~vGr--i~lele~~~~~ie~I~~iCee~lpf~y~----i~~G~f~r~~~TvtDY 120 (153)
T PF02505_consen 65 GEEVELTVKVGR--IILELEDEEDVIEKIREICEEVLPFGYD----IKEGKFIRTKPTVTDY 120 (153)
T ss_pred CEEEEEEEEEeE--EEEEecCcHHHHHHHHHHHHHhCCCceE----eeeeEEeccCCchhhh
Confidence 456788888874 4455555 77888898888887755544 4568887777787775
No 174
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=23.70 E-value=3e+02 Score=20.16 Aligned_cols=36 Identities=28% Similarity=0.391 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhhhHHHHHH
Q 022980 160 QAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTSAELLMK 203 (289)
Q Consensus 160 ~aI~~i~~evd~La~~v~~~e~~~~~g~k~~eke~~~LsE~LM~ 203 (289)
..|+.++.+...|.+.++.++.++ +++..|=|++-+
T Consensus 14 ~~i~tvk~en~~i~~~ve~i~env--------k~ll~lYE~Vs~ 49 (55)
T PF05377_consen 14 SSINTVKKENEEISESVEKIEENV--------KDLLSLYEVVSN 49 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHc
Confidence 446777788888888888887776 455666666554
No 175
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=23.61 E-value=2.3e+02 Score=21.40 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=29.4
Q ss_pred EEEEEEe--CCeEEEEEecCCCcHHHHHHHHHHHhCCCC
Q 022980 57 IRINVAR--GPSQYEVHVPARSTFGDLKKAISEKTGLDP 93 (289)
Q Consensus 57 I~V~Vk~--g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp 93 (289)
|+|..-. ++....|.|+..+|..++-..+.+..++..
T Consensus 5 lrV~~~~~~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~ 43 (90)
T smart00314 5 LRVYVDDLPGGTYKTLRVSSRTTARDVIQQLLEKFHLTD 43 (90)
T ss_pred EEEecccCCCCcEEEEEECCCCCHHHHHHHHHHHhCCCC
Confidence 4444433 245678999999999999999999999975
No 176
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=23.21 E-value=55 Score=24.49 Aligned_cols=17 Identities=24% Similarity=0.388 Sum_probs=11.5
Q ss_pred chhhhhcCCCCCCEEEE
Q 022980 108 NEHLDVSGMKDKSKVLL 124 (289)
Q Consensus 108 ~~~L~~~GVKdgskL~L 124 (289)
.+.|...|+++|++|.+
T Consensus 46 ~~~L~~~G~~~GD~V~I 62 (69)
T PF09269_consen 46 EKALRKAGAKEGDTVRI 62 (69)
T ss_dssp HHHHHTTT--TT-EEEE
T ss_pred HHHHHHcCCCCCCEEEE
Confidence 45699999999999874
No 177
>PF09429 Wbp11: WW domain binding protein 11; InterPro: IPR019007 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others. This entry represents WW domain-binding protein 11, which may play a role in the regulation of pre-mRNA processing. ; GO: 0006396 RNA processing
Probab=23.04 E-value=97 Score=23.86 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=16.7
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHH
Q 022980 199 ELLMKELLKLDGIEAEGEAKVQRKTEVRRVQKFH 232 (289)
Q Consensus 199 E~LM~~LLKLD~Ie~eGdaR~~RK~~VkrVQ~~L 232 (289)
+.|..+|.+||.++..|......+.-.+.++..|
T Consensus 40 ~~l~~ei~~L~~~e~~~~l~~~~k~~l~~Le~~l 73 (78)
T PF09429_consen 40 DRLQEEIDKLEEMEFNGKLSKVEKEKLKKLEKDL 73 (78)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 3455556666666555544333343344444433
No 178
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=23.03 E-value=1.4e+02 Score=19.27 Aligned_cols=27 Identities=26% Similarity=0.485 Sum_probs=20.0
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHHHHHHHHH
Q 022980 202 MKELLKLDGIEAEGEAKVQRKTEVRRVQKFH 232 (289)
Q Consensus 202 M~~LLKLD~Ie~eGdaR~~RK~~VkrVQ~~L 232 (289)
|++.++-=|+.+.|. +..+|.|++.++
T Consensus 9 Lk~~l~~~gL~~~G~----K~~Li~Rl~~~l 35 (35)
T PF02037_consen 9 LKEELKERGLSTSGK----KAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHTTS-STSS----HHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCC----HHHHHHHHHHhC
Confidence 567777778888776 778888888764
No 179
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=23.01 E-value=2.7e+02 Score=21.91 Aligned_cols=44 Identities=7% Similarity=0.087 Sum_probs=36.1
Q ss_pred EEEEEeCCeEEEEEecCC--CcHHHHHHHHHHHhCCCCCCcEEEEc
Q 022980 58 RINVARGPSQYEVHVPAR--STFGDLKKAISEKTGLDPQEQKVLFR 101 (289)
Q Consensus 58 ~V~Vk~g~~~~~V~V~a~--sTvgdLK~~I~e~TGvpp~~QKLiyk 101 (289)
.|+.|++++...+.++.+ .++.++...|+..-.|+.-.--|-|-
T Consensus 2 eVKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l~~~~f~i~Y~ 47 (80)
T cd06403 2 EVKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHIPNVDFLIGYT 47 (80)
T ss_pred ceecccCCeEEEEEeccccCcCHHHHHHHHHHHhCCCCCcEEEEEe
Confidence 577889998888888876 68999999999999998755555554
No 180
>PF07929 PRiA4_ORF3: Plasmid pRiA4b ORF-3-like protein; InterPro: IPR012912 Members of this family are similar to the protein product of ORF-3 (Q44206 from SWISSPROT) found on plasmid pRiA4 in the bacterium Agrobacterium rhizogenes. This plasmid is responsible for tumourigenesis at wound sites of plants infected by this bacterium, but the ORF-3 product does not seem to be involved in the pathogenetic process []. Other proteins found in this family are annotated as being putative TnpR resolvases (Q9LCU7 from SWISSPROT, Q50439 from SWISSPROT), but no further evidence was found to back this. Moreover, another member of this family is described as a probable lexA repressor (Q7UEI4 from SWISSPROT) and in fact carries a LexA DNA binding domain (IPR006199 from INTERPRO), but no references were found to expand on this. ; PDB: 2I1S_A.
Probab=22.42 E-value=1.7e+02 Score=25.23 Aligned_cols=61 Identities=23% Similarity=0.331 Sum_probs=35.2
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcC-ee------------------cCCchhhhhcCCCCCCEEEEE
Q 022980 65 PSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRG-KE------------------KEDNEHLDVSGMKDKSKVLLL 125 (289)
Q Consensus 65 ~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykG-K~------------------ldd~~~L~~~GVKdgskL~Lv 125 (289)
..+..|.||++.|+.+|=..|...+|......--++-+ +. ......|.++....|+++..+
T Consensus 17 ~iwRri~Vp~~~tl~~Lh~~Iq~afgw~~~HL~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~Y~ 96 (179)
T PF07929_consen 17 PIWRRIEVPADITLADLHEVIQAAFGWDDDHLYEFFIGGERYGIPDEDGMDFSEGDEIKDASEVKLGELLLEEGDKFTYV 96 (179)
T ss_dssp -EEEEEEEETT-BHHHHHHHHHHHTT----S-EEEEEE-TTTSSESSS---------EEETTT-BHHHC-BTTC-EEEEE
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHhCcCCCEeEEEEECCCccccccccccccccCCCcceeeeEEhhhhccCcCCEEEEE
Confidence 45778999999999999999999999875533322221 11 123345777776777775544
No 181
>PRK12765 flagellar capping protein; Provisional
Probab=22.14 E-value=1.7e+02 Score=30.76 Aligned_cols=50 Identities=18% Similarity=0.388 Sum_probs=37.2
Q ss_pred CcEEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHh--CCCCC--------CcEEEEcCee
Q 022980 55 PVIRINVARGPSQYEVHVPARSTFGDLKKAISEKT--GLDPQ--------EQKVLFRGKE 104 (289)
Q Consensus 55 ~~I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~T--Gvpp~--------~QKLiykGK~ 104 (289)
..+++++.+++..|.|.|++.+|+.+|...|-... ||... .-||++.++.
T Consensus 131 gt~tlti~~~g~~~tI~i~~~~TL~dl~~aIN~a~~~gV~Asiv~~g~~~~yrLvltS~~ 190 (595)
T PRK12765 131 GETDLTIFSNGKEYTITVDKSTTYRDLADKINEASGGKIQAKILNVGGKNPYRLVLQSKE 190 (595)
T ss_pred CceEEEEEeCCEEEEEEECCCCCHHHHHHHHhcCcCCceEEEEEEcCCCceEEEEEEecc
Confidence 45678888899999999999999999999997653 44421 1367766543
No 182
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=21.93 E-value=2.4e+02 Score=22.43 Aligned_cols=66 Identities=15% Similarity=0.148 Sum_probs=45.0
Q ss_pred EEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCC-cEEE------EcCeecCCchh----hhhcCCCCCCEEE
Q 022980 57 IRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQE-QKVL------FRGKEKEDNEH----LDVSGMKDKSKVL 123 (289)
Q Consensus 57 I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~-QKLi------ykGK~ldd~~~----L~~~GVKdgskL~ 123 (289)
|+|..- .|....|.|+...|.+++-+.|+...++.+.. =-|+ +=.+.++|.+. |+..++..+.+|+
T Consensus 5 vkv~~~-Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE~vvdvl~~W~~~~~n~l~ 81 (85)
T cd01787 5 VKVYSE-DGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHELVVEVLSTWHSAGNSVLF 81 (85)
T ss_pred EEEEec-CCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchHHHHHHHHhcccCCCcEEE
Confidence 444443 45678899999999999999999999987642 2222 22444677765 5666775555554
No 183
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=21.89 E-value=71 Score=23.92 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=14.9
Q ss_pred chhhhhcCCCCCCEEEE
Q 022980 108 NEHLDVSGMKDKSKVLL 124 (289)
Q Consensus 108 ~~~L~~~GVKdgskL~L 124 (289)
.+.|...|+++|++|.+
T Consensus 46 ~~~L~~~G~~~GD~V~I 62 (69)
T TIGR03595 46 EDALRKAGAKDGDTVRI 62 (69)
T ss_pred HHHHHHcCCCCCCEEEE
Confidence 56799999999999875
No 184
>TIGR02609 doc_partner putative addiction module antidote. Members of this protein family are putative addiction module antidote proteins that appear recurringly in two-gene operons with members of the Doc (death-on-curing) family TIGR01550. Members of this family contain a SpoVT/AbrB-like domain (pfam04014). Note that the gene pairs with a member of this family tend to be found on bacterial chromosomes, not on plasmids.
Probab=21.86 E-value=2.2e+02 Score=21.36 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=17.3
Q ss_pred CCchhhhhcCCCCCCEEEEEeeC
Q 022980 106 EDNEHLDVSGMKDKSKVLLLEEL 128 (289)
Q Consensus 106 dd~~~L~~~GVKdgskL~Lv~~~ 128 (289)
=+.+.+..+|+..|+.|.+....
T Consensus 14 IPk~i~~~lgl~~Gd~v~v~~~~ 36 (74)
T TIGR02609 14 LPKEVLESLGLKEGDTLYVDEEE 36 (74)
T ss_pred ECHHHHHHcCcCCCCEEEEEEEC
Confidence 35567888999999999876443
No 185
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=21.70 E-value=4e+02 Score=20.93 Aligned_cols=61 Identities=20% Similarity=0.208 Sum_probs=38.4
Q ss_pred CCcEEEEEEeC--CeEEEEEecCCCcHHHHHHHHHHH--hCCCCC----CcEEEEcCee--cCCchhhhhc
Q 022980 54 GPVIRINVARG--PSQYEVHVPARSTFGDLKKAISEK--TGLDPQ----EQKVLFRGKE--KEDNEHLDVS 114 (289)
Q Consensus 54 ~~~I~V~Vk~g--~~~~~V~V~a~sTvgdLK~~I~e~--TGvpp~----~QKLiykGK~--ldd~~~L~~~ 114 (289)
...|.|.|.+. ...+.+.++.++|+.+|-..+-.. .++.+. +-.|=-.|+. +-.+.+|.+|
T Consensus 14 ~~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y 84 (106)
T PF00794_consen 14 NNKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQY 84 (106)
T ss_dssp SSEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGB
T ss_pred CCeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeecc
Confidence 45688888875 677899999999999998776655 333332 2223334665 5566667666
No 186
>PRK06228 F0F1 ATP synthase subunit epsilon; Validated
Probab=21.59 E-value=96 Score=26.18 Aligned_cols=17 Identities=12% Similarity=0.307 Sum_probs=15.1
Q ss_pred hhhhhHHHHHHHHHhhc
Q 022980 193 ELDTSAELLMKELLKLD 209 (289)
Q Consensus 193 e~~~LsE~LM~~LLKLD 209 (289)
.+.+|.+.+|+||.+|+
T Consensus 113 ~~~~le~~~~~~~~~~~ 129 (131)
T PRK06228 113 ALAKLESGFIRRFMELK 129 (131)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 68899999999999886
No 187
>KOG4147 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.13 E-value=1.2e+02 Score=25.47 Aligned_cols=71 Identities=18% Similarity=0.353 Sum_probs=38.4
Q ss_pred CCcEEEEEEeC--------CeEEEEEecCCCcHHHHH----HHHHHHhCCCCC------CcEEEEc--------------
Q 022980 54 GPVIRINVARG--------PSQYEVHVPARSTFGDLK----KAISEKTGLDPQ------EQKVLFR-------------- 101 (289)
Q Consensus 54 ~~~I~V~Vk~g--------~~~~~V~V~a~sTvgdLK----~~I~e~TGvpp~------~QKLiyk-------------- 101 (289)
+.+|+|+|--. -..|.|++ ++.|+.+++ +.|.-.+.++|- ..|++.+
T Consensus 5 ~~tiTvRvIrsFeyRn~KnvV~Hd~dL-ad~Tvk~f~~~~~~~Iq~~~sl~pfRn~kfDtLKIy~~Ah~sKT~nLvinld 83 (127)
T KOG4147|consen 5 EVTITVRVIRSFEYRNFKNVVYHDVDL-ADQTVKEFIVFLKQDIQLRTSLPPFRNYKFDTLKIYHQAHKSKTNNLVINLD 83 (127)
T ss_pred ccEEEEEEEeccccccccceeEeccch-hHhhHHHHHHHHHHhcccCCCCCccccccccceeeehhhhhcccceEEEecc
Confidence 45677776531 12244444 344666655 555556777752 2333322
Q ss_pred --Cee-c-CCchhhhhcCCCCCCEEEEE
Q 022980 102 --GKE-K-EDNEHLDVSGMKDKSKVLLL 125 (289)
Q Consensus 102 --GK~-l-dd~~~L~~~GVKdgskL~Lv 125 (289)
.+. + ++..+|..|||.+...|-+.
T Consensus 84 hDd~w~L~d~~ktL~~~GIenETEis~F 111 (127)
T KOG4147|consen 84 HDDRWLLKDEDKTLKAAGIENETEISFF 111 (127)
T ss_pred CCcceeecCccchHHHhccCcchhhhhh
Confidence 222 2 35667888888777666544
No 188
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=20.98 E-value=1.2e+02 Score=23.50 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=18.6
Q ss_pred EEEEecCCCcHHHHHHHHHHHhC
Q 022980 68 YEVHVPARSTFGDLKKAISEKTG 90 (289)
Q Consensus 68 ~~V~V~a~sTvgdLK~~I~e~TG 90 (289)
.++.++.++|+.++|+.|-+...
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~A~ 24 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEEAK 24 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHHGG
T ss_pred eEEEccCcCcHHHHHHHHHHHHH
Confidence 47899999999999998887654
No 189
>KOG4842 consensus Protein involved in sister chromatid separation and/or segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=20.96 E-value=33 Score=32.63 Aligned_cols=71 Identities=14% Similarity=0.137 Sum_probs=53.1
Q ss_pred EEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCc------------------------hhhh
Q 022980 57 IRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDN------------------------EHLD 112 (289)
Q Consensus 57 I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~------------------------~~L~ 112 (289)
|.+...+.+..+.+++....+|-|.+..|...++|.+.-.||++.+-.++.+ +-++
T Consensus 4 i~~~~~~~gn~i~ls~~~~~ri~D~~~~l~K~~~vss~~~kll~~~llk~iahl~~p~mkEh~f~vti~~Dk~irnq~~s 83 (278)
T KOG4842|consen 4 IKTEGIKSGNAIYLSMAGSQRIPDKNPHLQKVAVVSSKPNKLLALNLLKEIAHLVSPLMKEHHFKVTILVDKYIRNQRLS 83 (278)
T ss_pred EEEEEEecCcEEEEEeccccccCCCCcccceeeeeccchHHHHhhhhhhhhhhhhhhhhccccceeEEeehhHHHhhhhh
Confidence 4444445678889999999999999999999999999988998886443322 2244
Q ss_pred hcCCCCCCEEEEEee
Q 022980 113 VSGMKDKSKVLLLEE 127 (289)
Q Consensus 113 ~~GVKdgskL~Lv~~ 127 (289)
...|.+|+++++.-.
T Consensus 84 g~nvn~gski~lslr 98 (278)
T KOG4842|consen 84 GMNVNHGSKIMLSLR 98 (278)
T ss_pred ccccCCcceEEEEee
Confidence 556777888777654
No 190
>KOG3483 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.81 E-value=2.7e+02 Score=22.01 Aligned_cols=58 Identities=12% Similarity=0.142 Sum_probs=47.7
Q ss_pred EEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCee-cCCchhhhhcCCCCCCEEEEEe
Q 022980 69 EVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKE-KEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 69 ~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~-ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
.++||....|-.+-+-.++.+.+|+..--+|-+... .....+-...=+|.||.|-++.
T Consensus 30 v~svpestpftavlkfaaeefkvpaatsaiitndgiginpaq~agnvflkhgselr~ip 88 (94)
T KOG3483|consen 30 VLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIP 88 (94)
T ss_pred eecCCCCCchHHHHHHHHHHccCCccceeEEecCccccCccccccceeeccCCEEEecc
Confidence 367888888988888899999999988777777665 7777777777789999998884
No 191
>PRK05841 flgE flagellar hook protein FlgE; Validated
Probab=20.52 E-value=1.1e+02 Score=32.34 Aligned_cols=42 Identities=31% Similarity=0.439 Sum_probs=32.2
Q ss_pred CCCcEEEEEEeC-CeEEEEEecCC---------CcHHHHHHHHHHHhCCCCC
Q 022980 53 GGPVIRINVARG-PSQYEVHVPAR---------STFGDLKKAISEKTGLDPQ 94 (289)
Q Consensus 53 ~~~~I~V~Vk~g-~~~~~V~V~a~---------sTvgdLK~~I~e~TGvpp~ 94 (289)
....|+|+|+.. |++..+++... .|+++||.+|.+.||+.-+
T Consensus 245 ~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~l~~~~~~~~~~~~~ 296 (603)
T PRK05841 245 TNRKLNITIQKEDGKKEDFVFTYGDAEKGENQFKTLGDLKKLLKEKTGLDLN 296 (603)
T ss_pred CCCeEEEEEecCCCcEEEEEEeecCccccCCceeechhhhhhhhhccccccc
Confidence 467899999975 66655555444 2899999999999999754
No 192
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=20.32 E-value=2e+02 Score=25.22 Aligned_cols=55 Identities=11% Similarity=0.122 Sum_probs=38.8
Q ss_pred CCcEEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhc
Q 022980 54 GPVIRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVS 114 (289)
Q Consensus 54 ~~~I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~ 114 (289)
+..|.++|+-|.-+ |++...+.+..+++.+.+.+-.+-+ +..|+.+....|+++|
T Consensus 64 g~~veL~V~VGrI~--le~~~~~~i~~I~eiC~e~~pF~y~----i~~g~f~r~~~TvtDY 118 (150)
T TIGR03260 64 GEDVELRVQVGRII--LELEDEDIVEEIEEICKEMLPFGYE----VRVGKFLRTKPTVTDY 118 (150)
T ss_pred CEEEEEEEEEeEEE--EEecCHHHHHHHHHHHHhhCCCceE----eeeeeEeecCCchhhh
Confidence 45688888887444 4444667888888888888776655 5667776666777665
Done!