Query 022980
Match_columns 289
No_of_seqs 224 out of 791
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 14:21:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022980.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022980hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m62_A BAG-family molecular ch 99.8 2.9E-20 9.9E-25 145.3 9.2 75 158-238 9-85 (87)
2 1uk5_A BAG-family molecular ch 99.8 2.9E-20 1E-24 150.9 9.4 81 157-243 27-109 (111)
3 1m7k_A Silencer of death domai 99.8 1.1E-19 3.6E-24 145.0 8.9 75 157-237 21-97 (99)
4 1ugo_A BCL2-associated athanog 99.8 1.8E-19 6.2E-24 143.7 7.8 76 158-239 16-93 (99)
5 3a8y_C BAG family molecular ch 99.8 2.9E-19 1E-23 150.1 9.2 82 157-244 31-114 (142)
6 1wgg_A Ubiquitin carboxyl-term 99.8 7.3E-19 2.5E-23 138.6 10.5 77 53-130 4-81 (96)
7 1v5t_A 8430435I17RIK protein; 99.8 2.2E-18 7.6E-23 133.8 9.3 78 53-130 4-85 (90)
8 1v86_A DNA segment, CHR 7, way 99.7 6E-18 2.1E-22 132.9 9.0 79 51-130 12-90 (95)
9 1wxv_A BAG-family molecular ch 99.7 2.6E-17 8.9E-22 127.5 10.5 78 53-130 4-87 (92)
10 2bwf_A Ubiquitin-like protein 99.7 6.2E-17 2.1E-21 120.0 10.8 72 57-128 5-76 (77)
11 1j8c_A Ubiquitin-like protein 99.7 8.8E-17 3E-21 132.6 12.4 91 22-128 14-104 (125)
12 3v6c_B Ubiquitin; structural g 99.7 1E-16 3.4E-21 123.9 10.5 77 50-126 11-88 (91)
13 3plu_A Ubiquitin-like modifier 99.7 1.1E-16 3.7E-21 126.6 9.5 73 53-125 18-91 (93)
14 3phx_B Ubiquitin-like protein 99.7 1.8E-16 6.1E-21 118.8 10.1 72 55-126 3-75 (79)
15 2kd0_A LRR repeats and ubiquit 99.7 2.5E-16 8.5E-21 121.1 10.6 76 53-128 9-84 (85)
16 3dbh_I NEDD8; cell cycle, acti 99.7 2.6E-16 9E-21 119.6 10.4 74 53-126 9-83 (88)
17 2dzi_A Ubiquitin-like protein 99.7 3.5E-16 1.2E-20 117.0 10.1 75 53-127 4-79 (81)
18 4eew_A Large proline-rich prot 99.7 3.8E-16 1.3E-20 119.4 9.6 73 53-126 14-87 (88)
19 2kk8_A Uncharacterized protein 99.7 3.8E-16 1.3E-20 120.1 9.6 74 55-128 9-84 (84)
20 1i6z_A BAG-family molecular ch 99.7 1.2E-16 4.2E-21 133.3 6.9 110 118-242 1-119 (135)
21 4dwf_A HLA-B-associated transc 99.6 7.4E-16 2.5E-20 118.3 10.5 75 54-129 3-78 (90)
22 1wh3_A 59 kDa 2'-5'-oligoadeny 99.6 8E-16 2.7E-20 117.0 10.6 76 53-128 4-80 (87)
23 2wyq_A HHR23A, UV excision rep 99.6 8.8E-16 3E-20 116.2 10.5 75 54-128 3-81 (85)
24 4hcn_B Polyubiquitin, ubiquiti 99.6 3.6E-16 1.2E-20 122.8 8.5 78 50-127 16-94 (98)
25 2kan_A Uncharacterized protein 99.6 7.9E-16 2.7E-20 120.6 10.3 77 52-128 11-88 (94)
26 1yqb_A Ubiquilin 3; structural 99.6 1.2E-15 4.1E-20 120.9 11.3 76 53-128 19-94 (100)
27 2klc_A Ubiquilin-1; ubiquitin- 99.6 9.3E-16 3.2E-20 121.6 10.7 76 54-129 23-98 (101)
28 3m62_B UV excision repair prot 99.6 3.3E-16 1.1E-20 125.2 8.0 73 56-128 1-74 (106)
29 2lxa_A Ubiquitin-like protein 99.6 1.8E-16 6.1E-21 123.4 6.3 75 56-130 1-80 (87)
30 3mtn_B UBA80, ubcep1, ubiquiti 99.6 1.1E-15 3.8E-20 115.0 9.9 73 55-127 2-75 (85)
31 1ndd_A NEDD8, protein (ubiquit 99.6 1.1E-15 3.6E-20 112.4 9.4 71 57-127 1-72 (76)
32 3shq_A UBLCP1; phosphatase, hy 99.6 3.9E-16 1.3E-20 147.3 8.3 78 53-130 2-82 (320)
33 4fbj_B NEDD8; effector-HOST ta 99.6 9.3E-16 3.2E-20 118.2 8.9 71 57-127 1-72 (88)
34 1wx7_A Ubiquilin 3; ubiquitin- 99.6 3.3E-15 1.1E-19 118.8 12.3 81 48-128 9-89 (106)
35 1ttn_A DC-UBP, dendritic cell- 99.6 1.9E-15 6.5E-20 120.5 10.7 76 53-128 20-96 (106)
36 1uh6_A Ubiquitin-like 5; beta- 99.6 9.7E-16 3.3E-20 122.6 8.8 73 53-125 25-98 (100)
37 3n3k_B Ubiquitin; hydrolase, p 99.6 9.2E-16 3.1E-20 115.7 8.2 73 55-127 2-75 (85)
38 3a9j_A Ubiquitin; protein comp 99.6 1.9E-15 6.4E-20 111.1 9.5 71 57-127 1-72 (76)
39 1wx8_A Riken cDNA 4931431F19; 99.6 1.2E-15 4E-20 118.8 8.9 76 53-128 14-89 (96)
40 4a20_A Ubiquitin-like protein 99.6 1.1E-15 3.7E-20 121.5 8.7 76 53-128 16-96 (98)
41 2l7r_A Ubiquitin-like protein 99.6 1.1E-15 3.9E-20 119.1 8.6 74 53-127 16-89 (93)
42 2faz_A Ubiquitin-like containi 99.6 2.7E-15 9.3E-20 111.9 10.3 72 56-127 2-76 (78)
43 1wju_A NEDD8 ultimate buster-1 99.6 1.3E-15 4.3E-20 121.9 8.6 76 55-130 16-94 (100)
44 2hj8_A Interferon-induced 17 k 99.6 1.6E-15 5.6E-20 116.7 8.7 74 55-128 3-77 (88)
45 3m63_B Ubiquitin domain-contai 99.6 3.4E-16 1.2E-20 124.3 5.0 73 55-127 27-99 (101)
46 1wy8_A NP95-like ring finger p 99.6 4.4E-15 1.5E-19 113.5 10.9 75 54-128 5-82 (89)
47 1uel_A HHR23B, UV excision rep 99.6 3.9E-15 1.3E-19 116.3 10.7 72 57-128 1-76 (95)
48 1v5o_A 1700011N24RIK protein; 99.6 3.8E-15 1.3E-19 118.0 10.6 76 54-129 5-86 (102)
49 3k9o_B Ubiquitin, UBB+1; E2-25 99.6 4E-15 1.4E-19 115.3 9.6 71 57-127 2-73 (96)
50 1wgd_A Homocysteine-responsive 99.6 2.7E-15 9.4E-20 116.4 8.6 74 54-127 5-85 (93)
51 1x1m_A Ubiquitin-like protein 99.6 3.8E-15 1.3E-19 119.1 9.6 78 52-129 8-101 (107)
52 2dzm_A FAS-associated factor 1 99.6 2.5E-15 8.5E-20 120.0 8.1 75 53-127 6-81 (100)
53 1sif_A Ubiquitin; hydrophobic 99.6 7.9E-15 2.7E-19 113.0 9.4 72 56-127 9-81 (88)
54 3u30_A Ubiquitin, linear DI-ub 99.6 7.9E-15 2.7E-19 125.4 10.0 78 50-127 14-92 (172)
55 1yx5_B Ubiquitin; proteasome, 99.6 1.1E-14 3.7E-19 113.9 9.9 72 57-128 1-73 (98)
56 2kdb_A Homocysteine-responsive 99.6 4.5E-15 1.5E-19 118.1 7.1 76 50-125 17-99 (99)
57 3vdz_A Ubiquitin-40S ribosomal 99.6 1.2E-14 4E-19 117.1 9.3 73 55-127 34-107 (111)
58 2ojr_A Ubiquitin; lanthide-bin 99.6 1.7E-14 5.7E-19 115.9 9.9 75 53-127 32-107 (111)
59 1hx1_B BAG-1, BAG-family molec 99.5 2E-14 7E-19 116.5 9.8 98 141-242 3-109 (114)
60 2uyz_B Small ubiquitin-related 99.5 1.6E-14 5.6E-19 108.0 8.4 73 55-127 2-75 (79)
61 1wyw_B Ubiquitin-like protein 99.5 2.4E-14 8.1E-19 112.4 9.0 75 53-127 18-93 (97)
62 1we6_A Splicing factor, putati 99.5 1.8E-14 6.2E-19 115.6 8.5 73 55-127 26-103 (111)
63 2daf_A FLJ35834 protein; hypot 99.5 4.4E-14 1.5E-18 115.9 10.5 78 53-130 12-91 (118)
64 2kjr_A CG11242; UBL, ubiquitin 99.5 5E-14 1.7E-18 111.2 10.4 75 52-126 11-94 (95)
65 4b6w_A Tubulin-specific chaper 99.5 2.7E-14 9.3E-19 110.7 8.7 71 56-126 2-82 (86)
66 3b1l_X E3 ubiquitin-protein li 99.3 8.9E-16 3E-20 113.8 0.0 71 57-127 1-72 (76)
67 2fnj_B Transcription elongatio 99.5 3.4E-14 1.2E-18 116.8 8.8 72 56-127 2-80 (118)
68 1t7s_A BAG-1 cochaperone; stru 99.5 2.9E-14 9.9E-19 119.0 8.3 107 120-241 1-123 (137)
69 1wia_A Hypothetical ubiquitin- 99.5 7.7E-14 2.6E-18 108.4 10.2 73 53-128 4-78 (95)
70 1we7_A SF3A1 protein; structur 99.5 7.2E-14 2.5E-18 112.8 9.7 73 55-127 24-107 (115)
71 1v2y_A 3300001G02RIK protein; 99.5 2.3E-14 8E-19 115.4 6.8 76 53-128 4-96 (105)
72 1v6e_A Cytoskeleton-associated 99.5 7E-14 2.4E-18 109.3 8.9 72 55-126 6-86 (95)
73 2kdi_A Ubiquitin, vacuolar pro 99.5 8.7E-14 3E-18 112.7 9.7 74 55-128 8-82 (114)
74 4ajy_B Transcription elongatio 99.5 6.3E-14 2.2E-18 115.2 8.8 72 56-127 2-80 (118)
75 3rt3_B Ubiquitin-like protein 99.5 1.2E-13 4.1E-18 116.1 10.4 74 54-127 79-153 (159)
76 3l0w_B Monoubiquitinated proli 99.5 1.5E-13 5.1E-18 118.6 10.0 71 57-127 1-72 (169)
77 2kj6_A Tubulin folding cofacto 99.5 1.9E-13 6.6E-18 108.3 9.7 74 54-127 12-95 (97)
78 3b08_A Polyubiquitin-C, ubiqui 99.5 2.5E-13 8.6E-18 112.1 10.1 72 57-128 1-73 (152)
79 3rt3_B Ubiquitin-like protein 99.5 1.9E-13 6.5E-18 114.9 9.3 71 57-127 3-76 (159)
80 1wgh_A Ubiquitin-like 3, HCG-1 99.4 5.9E-13 2E-17 108.9 11.2 80 53-132 13-103 (116)
81 4dbg_A Ranbp-type and C3HC4-ty 99.4 5.1E-13 1.8E-17 107.7 10.1 72 56-127 24-99 (105)
82 3q3f_A Ribonuclease/ubiquitin 99.4 2.9E-13 1E-17 119.2 9.3 72 56-127 105-177 (189)
83 2gow_A HCG-1 protein, ubiquiti 99.4 3.4E-13 1.2E-17 111.7 9.2 81 50-130 11-102 (125)
84 3u5e_m 60S ribosomal protein L 99.4 1.3E-14 4.3E-19 119.5 0.0 71 57-127 1-72 (128)
85 1t0y_A Tubulin folding cofacto 99.4 3.9E-13 1.3E-17 110.0 8.9 72 55-126 5-85 (122)
86 3b08_A Polyubiquitin-C, ubiqui 99.4 7.4E-13 2.5E-17 109.2 10.5 72 56-127 76-148 (152)
87 1wf9_A NPL4 family protein; be 99.4 8.3E-13 2.8E-17 105.6 8.9 76 55-130 6-97 (107)
88 3u30_A Ubiquitin, linear DI-ub 99.4 1.1E-12 3.6E-17 112.1 9.7 71 56-126 96-167 (172)
89 3u5c_f 40S ribosomal protein S 99.3 7.8E-14 2.7E-18 118.9 0.0 71 57-127 1-72 (152)
90 2kzr_A Ubiquitin thioesterase 99.3 2.4E-12 8.1E-17 98.7 7.6 72 57-128 1-78 (86)
91 2dzj_A Synaptic glycoprotein S 99.3 3.4E-12 1.2E-16 99.1 8.4 71 54-124 8-85 (88)
92 3ai5_A Yeast enhanced green fl 99.3 4.3E-12 1.5E-16 119.3 10.4 74 53-126 230-304 (307)
93 1se9_A Ubiquitin family; ubiqu 99.3 8.5E-12 2.9E-16 103.5 10.1 76 54-129 14-104 (126)
94 1oqy_A HHR23A, UV excision rep 99.3 3.6E-12 1.2E-16 122.4 7.3 71 55-125 6-80 (368)
95 1wjn_A Tubulin-folding protein 99.1 1.7E-10 5.7E-15 90.2 9.2 74 53-126 6-91 (97)
96 3a4r_A Nfatc2-interacting prot 99.0 2.2E-09 7.5E-14 81.5 10.4 74 53-126 4-79 (79)
97 2io1_B Small ubiquitin-related 99.0 1.5E-09 5E-14 85.3 8.9 73 54-126 5-78 (94)
98 2xzm_9 RPS31E; ribosome, trans 99.0 5E-11 1.7E-15 105.1 0.0 65 57-126 1-66 (189)
99 1wm3_A Ubiquitin-like protein 98.9 3.5E-09 1.2E-13 78.7 8.8 69 57-125 2-71 (72)
100 2io0_B Small ubiquitin-related 98.9 3.2E-09 1.1E-13 83.0 8.7 75 53-127 2-77 (91)
101 2d07_B Ubiquitin-like protein 98.8 1.3E-08 4.5E-13 79.6 9.1 74 53-126 14-88 (93)
102 2eke_C Ubiquitin-like protein 98.8 1.9E-08 6.3E-13 81.0 9.5 74 53-126 28-101 (106)
103 1wz0_A Ubiquitin-like protein 98.8 1.5E-08 5.3E-13 81.1 8.6 74 53-126 21-95 (104)
104 2k8h_A Small ubiquitin protein 98.8 1.8E-08 6.2E-13 81.5 8.4 75 53-127 23-98 (110)
105 2pjh_A Protein NPL4, nuclear p 98.5 9.2E-08 3.2E-12 72.9 4.3 69 57-125 5-78 (80)
106 3kyd_D Small ubiquitin-related 98.4 1.4E-06 4.6E-11 71.2 9.3 73 54-126 38-111 (115)
107 3pge_A SUMO-modified prolifera 98.4 1.1E-06 3.7E-11 78.0 9.0 75 53-127 26-100 (200)
108 4efo_A Serine/threonine-protei 98.3 1.7E-06 5.7E-11 68.4 7.0 64 63-126 21-87 (94)
109 3tix_A Ubiquitin-like protein 98.2 2.2E-06 7.6E-11 75.9 7.8 75 53-127 54-128 (207)
110 2d9d_A BAG family molecular ch 98.1 9.3E-06 3.2E-10 62.4 8.5 69 160-236 10-80 (89)
111 2jxx_A Nfatc2-interacting prot 97.9 6.9E-05 2.3E-09 59.2 10.0 74 53-126 22-97 (97)
112 3v7o_A Minor nucleoprotein VP3 97.8 2.2E-06 7.6E-11 76.8 0.0 74 53-126 18-91 (227)
113 3goe_A DNA repair protein RAD6 97.8 0.00016 5.4E-09 55.4 9.6 71 55-125 8-80 (82)
114 2al3_A TUG long isoform; TUG U 97.7 0.00011 3.9E-09 57.4 8.2 73 57-129 10-83 (90)
115 3uf8_A Ubiquitin-like protein 97.7 0.00012 4.2E-09 64.6 8.7 78 50-127 15-92 (209)
116 2l76_A Nfatc2-interacting prot 97.6 0.00045 1.5E-08 54.5 10.4 73 54-126 19-91 (95)
117 2bps_A YUKD protein; ubiquitin 97.6 8.8E-05 3E-09 56.9 6.0 69 56-124 4-80 (81)
118 3ix6_A TS, tsase, thymidylate 97.4 1.8E-05 6.2E-10 75.7 0.0 75 53-127 18-92 (360)
119 4da1_A Protein phosphatase 1K, 97.2 5.8E-05 2E-09 71.9 0.0 74 53-126 27-100 (389)
120 1wj4_A KIAA0794 protein; UBX d 97.0 0.006 2E-07 49.8 10.6 95 19-126 18-118 (124)
121 2kc2_A Talin-1, F1; FERM, adhe 97.0 0.0011 3.8E-08 54.9 6.0 67 59-125 14-120 (128)
122 3qx1_A FAS-associated factor 1 96.7 0.0093 3.2E-07 44.9 8.5 73 53-126 4-82 (84)
123 1oey_A P67-PHOX, neutrophil cy 96.0 0.018 6.1E-07 44.3 6.7 48 55-103 4-51 (83)
124 2dzk_A UBX domain-containing p 96.0 0.046 1.6E-06 43.4 9.4 75 52-126 9-89 (109)
125 2cr5_A Reproduction 8; UBX dom 95.5 0.13 4.5E-06 40.6 10.3 72 54-126 21-97 (109)
126 2daj_A KIAA0977 protein, COBL- 95.4 0.05 1.7E-06 42.2 7.2 73 50-125 4-80 (91)
127 4a3p_A Ubiquitin carboxyl-term 94.7 0.2 6.9E-06 44.0 10.1 59 67-125 141-206 (217)
128 1ryj_A Unknown; beta/alpha pro 93.9 0.49 1.7E-05 34.2 9.1 61 57-126 5-65 (70)
129 3jyu_A Ubiquitin carboxyl-term 93.7 0.32 1.1E-05 43.2 9.5 58 68-125 154-218 (231)
130 1vd2_A Protein kinase C, IOTA 93.5 0.34 1.2E-05 37.5 8.0 50 53-102 3-53 (89)
131 1ip9_A BEM1 protein; ubiquitin 93.3 0.34 1.2E-05 37.3 7.6 68 55-125 11-83 (85)
132 2l32_A Small archaeal modifier 92.9 0.26 9E-06 36.4 6.3 60 57-126 1-61 (74)
133 1vjk_A Molybdopterin convertin 92.8 0.99 3.4E-05 34.5 9.8 66 56-126 9-93 (98)
134 3ivf_A Talin-1; FERM domain, c 92.8 0.42 1.5E-05 44.6 9.2 69 57-125 4-82 (371)
135 1s3s_G P47 protein; AAA ATPase 90.9 0.52 1.8E-05 38.2 6.5 68 55-122 51-123 (127)
136 3po0_A Small archaeal modifier 90.4 2.2 7.5E-05 31.6 9.2 58 64-126 16-84 (89)
137 4eut_A Serine/threonine-protei 88.9 0.78 2.7E-05 42.3 6.9 69 58-126 314-385 (396)
138 2qjl_A URM1, ubiquitin-related 87.8 4.1 0.00014 31.0 9.3 67 57-126 2-94 (99)
139 1q1o_A Cell division control p 86.1 1.4 4.7E-05 34.7 5.7 47 56-102 5-64 (98)
140 2kvr_A Ubiquitin carboxyl-term 85.9 0.77 2.6E-05 37.5 4.3 33 68-100 58-90 (130)
141 1fm0_D Molybdopterin convertin 84.9 2 6.8E-05 31.1 5.8 57 64-126 15-76 (81)
142 4e71_A Plexin-B2, MM1; transme 84.3 6.4 0.00022 31.5 8.9 73 54-126 9-109 (111)
143 1tyg_B YJBS; alpha beta barrel 84.3 2.4 8.2E-05 32.3 6.2 61 59-126 21-82 (87)
144 1wgk_A Riken cDNA 2900073H19 p 84.1 4.4 0.00015 32.2 7.9 67 55-126 10-103 (114)
145 2q5w_D Molybdopterin convertin 81.9 2.3 7.9E-05 30.5 5.1 57 64-126 14-72 (77)
146 3rpf_C Molybdopterin convertin 81.7 3 0.0001 30.1 5.6 65 57-126 1-69 (74)
147 2r2o_A Plexin-B1; effector dom 81.6 8.1 0.00028 32.1 8.8 74 54-127 22-128 (138)
148 2hj1_A Hypothetical protein; s 77.4 6.7 0.00023 30.4 6.6 69 53-126 9-84 (97)
149 1f0z_A THis protein; ubiquitin 77.2 4.8 0.00016 28.3 5.4 58 62-126 4-61 (66)
150 1wj6_A KIAA0049 protein, RSGI 76.8 13 0.00045 29.3 8.1 43 52-94 10-54 (101)
151 3dwg_C 9.5 kDa culture filtrat 76.7 7.6 0.00026 28.8 6.7 56 69-126 20-88 (93)
152 2k5p_A THis protein, thiamine- 76.0 3.7 0.00013 30.4 4.7 60 62-126 4-64 (78)
153 3qa8_A MGC80376 protein; kinas 75.6 1.4 4.9E-05 45.0 3.0 57 58-114 314-371 (676)
154 2bkf_A Zinc-finger protein NBR 75.2 11 0.00037 29.0 7.1 47 53-101 3-51 (87)
155 2eel_A Cell death activator CI 75.1 13 0.00043 28.8 7.5 57 65-126 20-78 (91)
156 2l52_A Methanosarcina acetivor 74.9 10 0.00035 28.8 7.1 68 55-126 2-94 (99)
157 2cu3_A Unknown function protei 72.9 8 0.00028 27.0 5.6 56 63-126 4-59 (64)
158 3onh_A Ubiquitin-activating en 72.9 8.1 0.00028 31.6 6.3 59 69-127 9-79 (127)
159 1wgy_A RAP guanine nucleotide 72.6 8.4 0.00029 30.5 6.1 75 53-127 6-86 (104)
160 2ylm_A Ubiquitin carboxyl-term 71.9 9.8 0.00034 37.6 7.9 72 53-124 127-214 (530)
161 3kuz_A Plexin-C1; structural g 71.8 17 0.00058 29.7 8.0 74 53-126 16-125 (126)
162 1f2r_I Inhibitor of caspase-ac 70.7 30 0.001 27.1 8.9 70 55-127 17-90 (100)
163 4e74_A Plexin-A4; RBD, structu 70.7 19 0.00064 29.0 7.9 73 54-126 11-113 (117)
164 2cu1_A Mitogen-activated prote 69.8 12 0.00041 29.5 6.4 47 55-104 7-53 (103)
165 2kl0_A Putative thiamin biosyn 69.3 9.2 0.00031 27.8 5.4 56 63-126 5-60 (73)
166 1rws_A Hypothetical protein PF 67.1 2.1 7.3E-05 31.2 1.5 49 68-125 23-71 (77)
167 1y8x_B Ubiquitin-activating en 65.8 9.8 0.00034 29.6 5.2 62 64-125 3-82 (98)
168 2ylm_A Ubiquitin carboxyl-term 64.1 5 0.00017 39.8 3.9 30 69-98 39-68 (530)
169 3h6n_A Plexin-D1; structural g 61.4 59 0.002 26.5 9.2 71 56-126 4-103 (127)
170 2kmc_A Fermitin family homolog 60.3 60 0.0021 25.5 8.9 71 56-126 19-98 (102)
171 1ef1_A Moesin; membrane, FERM 59.2 53 0.0018 28.9 9.5 67 57-123 2-74 (294)
172 3u52_E Phenol hydroxylase comp 58.8 31 0.0011 27.9 7.0 71 55-125 22-107 (119)
173 2g1e_A Hypothetical protein TA 56.3 35 0.0012 24.6 6.6 57 69-126 18-85 (90)
174 3onj_A T-snare VTI1; helix, HA 54.6 18 0.00062 27.7 4.9 44 191-239 7-50 (97)
175 1pqs_A Cell division control p 54.3 13 0.00044 27.7 3.8 37 66-102 2-43 (77)
176 1vcs_A Vesicle transport throu 54.0 18 0.00063 27.9 4.9 45 190-239 10-54 (102)
177 3hm6_X Plexin-B1; structural g 53.6 39 0.0013 34.5 8.3 74 54-127 255-361 (644)
178 1ibx_B Chimera of IGG binding 52.2 19 0.00066 30.0 4.9 51 75-127 81-135 (145)
179 1wmh_B Partitioning defective- 51.2 52 0.0018 25.0 6.9 48 55-102 5-54 (86)
180 2juo_A GA-binding protein alph 48.6 49 0.0017 25.4 6.3 58 68-125 5-62 (89)
181 2k9x_A Tburm1, uncharacterized 48.5 4.7 0.00016 31.9 0.6 68 57-126 5-97 (110)
182 1h4r_A Merlin; FERM, neurofibr 48.3 86 0.0029 27.9 9.2 68 54-122 20-93 (314)
183 2jrh_A Mitogen-activated prote 47.8 49 0.0017 25.6 6.2 46 56-104 4-49 (94)
184 3qij_A Protein 4.1; cytoskelet 47.5 23 0.00079 31.8 5.2 71 54-124 15-92 (296)
185 3ig3_A Plxna3 protein; plexin 46.6 76 0.0026 32.3 9.1 74 54-127 231-334 (627)
186 2npt_B Mitogen-activated prote 45.1 52 0.0018 25.7 6.0 44 55-101 19-62 (100)
187 3ivf_A Talin-1; FERM domain, c 44.8 1.1E+02 0.0039 27.9 9.6 70 57-126 86-166 (371)
188 3ls0_A SLL1638 protein, PSBQ; 44.8 56 0.0019 26.8 6.5 81 153-233 23-127 (133)
189 2qyw_A Vesicle transport throu 43.9 44 0.0015 25.7 5.6 44 192-239 22-65 (102)
190 3r8s_T 50S ribosomal protein L 43.5 87 0.003 23.9 7.1 57 66-125 28-85 (93)
191 1j0g_A Hypothetical protein 18 43.4 34 0.0011 26.1 4.6 58 69-126 27-85 (92)
192 4e61_A Protein BIM1; EB1-like 43.3 43 0.0015 26.5 5.5 67 161-234 19-98 (106)
193 2c60_A Human mitogen-activated 41.4 61 0.0021 25.7 6.0 46 55-103 30-75 (111)
194 3zsu_A TLL2057 protein, cyanoq 41.1 46 0.0016 27.2 5.5 46 189-234 77-125 (130)
195 2dhz_A RAP guanine nucleotide 40.9 50 0.0017 26.6 5.6 71 54-126 7-91 (120)
196 2i1j_A Moesin; FERM, coiled-co 38.7 1.1E+02 0.0037 30.5 8.9 69 56-124 4-78 (575)
197 2c7h_A RBBP6, retinoblastoma-b 37.8 1.3E+02 0.0045 22.8 7.9 72 54-129 4-82 (86)
198 1d4b_A CIDE B, human cell deat 37.0 51 0.0018 26.7 5.1 65 57-127 38-104 (122)
199 1wgr_A Growth factor receptor- 35.0 83 0.0029 24.4 5.9 73 57-129 10-94 (100)
200 3tve_T 50S ribosomal protein L 31.1 77 0.0026 24.2 5.0 56 66-124 22-78 (92)
201 1v8c_A MOAD related protein; r 30.6 1.3E+02 0.0044 25.1 6.8 56 69-126 17-82 (168)
202 2lgx_A Fermitin family homolog 29.0 39 0.0013 27.0 3.0 70 56-125 26-100 (112)
203 2ns5_A Partitioning-defective 25.7 2.2E+02 0.0074 21.5 8.2 69 56-125 2-80 (85)
204 2zjd_A Microtubule-associated 24.6 93 0.0032 25.2 4.7 59 55-113 34-102 (130)
205 2kmm_A Guanosine-3',5'-BIS(dip 24.3 74 0.0025 21.8 3.6 50 70-126 13-62 (73)
206 2bt6_A Adrenodoxin 1; rutheniu 22.3 85 0.0029 23.6 3.9 37 53-93 3-40 (108)
207 2zjr_Q 50S ribosomal protein L 21.9 1.7E+02 0.0058 22.3 5.5 56 67-125 24-80 (95)
208 2r2q_A Gamma-aminobutyric acid 21.4 1.3E+02 0.0044 23.4 4.8 44 70-113 48-92 (110)
No 1
>1m62_A BAG-family molecular chaperone regulator-4; BAG domain, SODD, silencer of death domains, HSP70/HSC70 CO-chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=99.82 E-value=2.9e-20 Score=145.29 Aligned_cols=75 Identities=29% Similarity=0.399 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhhhHHHHHHHHHhhcCCCCch--hHHHHHHHHHHHHHHHHHHH
Q 022980 158 ALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIEAEG--EAKVQRKTEVRRVQKFHETL 235 (289)
Q Consensus 158 a~~aI~~i~~evd~La~~v~~~e~~~~~g~k~~eke~~~LsE~LM~~LLKLD~Ie~eG--daR~~RK~~VkrVQ~~Le~L 235 (289)
++++|+.|..+|++|+++|..|+ +++.+++|.+|+|+||++|||||+|+++| ++|++||.+|++||++|+.|
T Consensus 9 a~~~I~~I~~ev~~L~~~V~~f~------g~~~dkey~~L~E~L~k~LLkLD~Ie~eG~~~~R~~RK~~Vk~iQ~~l~~L 82 (87)
T 1m62_A 9 SIKKIIHVLEKVQYLEQEVEEFV------GKKTDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKEAVCKIQAILEKL 82 (87)
T ss_dssp THHHHHHHHHHHHHHHHHHHHCC------CCTTSHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh------CCcchHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999984 56899999999999999999999999999 59999999999999999999
Q ss_pred HHH
Q 022980 236 DNL 238 (289)
Q Consensus 236 D~l 238 (289)
|..
T Consensus 83 D~k 85 (87)
T 1m62_A 83 EKK 85 (87)
T ss_dssp HHH
T ss_pred Hhc
Confidence 974
No 2
>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1
Probab=99.82 E-value=2.9e-20 Score=150.92 Aligned_cols=81 Identities=28% Similarity=0.401 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhhhHHHHHHHHHhhcCCCCch--hHHHHHHHHHHHHHHHHHH
Q 022980 157 KALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIEAEG--EAKVQRKTEVRRVQKFHET 234 (289)
Q Consensus 157 ka~~aI~~i~~evd~La~~v~~~e~~~~~g~k~~eke~~~LsE~LM~~LLKLD~Ie~eG--daR~~RK~~VkrVQ~~Le~ 234 (289)
.++.+|+.|..+|++|+++|..| .+++.+++|.+|+|+|||+|||||+|+++| ++|++||.+||+||++|+.
T Consensus 27 p~~~~I~~I~~eV~~L~~qV~~f------~g~k~dkey~~L~E~L~k~LLkLD~IeteG~~~vR~aRK~aVk~iQ~~l~~ 100 (111)
T 1uk5_A 27 PGVLKVEAILEKVQGLEQAVDSF------EGKKTDKKYLMIEEYLTKELLALDSVDPEGRADVRQARRDGVRKVQTILEK 100 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC------CSCSSSHHHHHHHHHHHHHHHHHHSCCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH------cCCcchHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999998 456799999999999999999999999999 5999999999999999999
Q ss_pred HHHHHhhcC
Q 022980 235 LDNLKAINS 243 (289)
Q Consensus 235 LD~lk~~n~ 243 (289)
||.....++
T Consensus 101 LD~k~~~~~ 109 (111)
T 1uk5_A 101 LEQKASGPS 109 (111)
T ss_dssp HHHHHHCCC
T ss_pred HHhcccCCC
Confidence 999765443
No 3
>1m7k_A Silencer of death domains; three helix bundle, chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=99.80 E-value=1.1e-19 Score=145.03 Aligned_cols=75 Identities=29% Similarity=0.406 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhhhHHHHHHHHHhhcCCCCch--hHHHHHHHHHHHHHHHHHH
Q 022980 157 KALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIEAEG--EAKVQRKTEVRRVQKFHET 234 (289)
Q Consensus 157 ka~~aI~~i~~evd~La~~v~~~e~~~~~g~k~~eke~~~LsE~LM~~LLKLD~Ie~eG--daR~~RK~~VkrVQ~~Le~ 234 (289)
+++++|..|..+|++|+++|..|+ +++.+++|.+|+|+|||+|||||+|+++| ++|++||.+|++||++|+.
T Consensus 21 ~~~~kI~~I~~ev~~L~~~V~~f~------G~k~dkey~~L~E~L~k~LLkLD~IeteG~~~vR~~RK~~Vk~iQ~~l~~ 94 (99)
T 1m7k_A 21 PSIKKIIHVLEKVQYLEQEVEEFV------GKKTDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKEAVCKIQAILEK 94 (99)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCC------SCTTSHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHh------CCchHHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999984 44699999999999999999999999999 5999999999999999999
Q ss_pred HHH
Q 022980 235 LDN 237 (289)
Q Consensus 235 LD~ 237 (289)
||.
T Consensus 95 LD~ 97 (99)
T 1m7k_A 95 LEK 97 (99)
T ss_dssp HHH
T ss_pred Hhc
Confidence 997
No 4
>1ugo_A BCL2-associated athanogene 5; triple helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, chaperone; NMR {Mus musculus} SCOP: a.7.7.1
Probab=99.79 E-value=1.8e-19 Score=143.70 Aligned_cols=76 Identities=16% Similarity=0.382 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhhhHHHHHHHHHhhcCCCCch--hHHHHHHHHHHHHHHHHHHH
Q 022980 158 ALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIEAEG--EAKVQRKTEVRRVQKFHETL 235 (289)
Q Consensus 158 a~~aI~~i~~evd~La~~v~~~e~~~~~g~k~~eke~~~LsE~LM~~LLKLD~Ie~eG--daR~~RK~~VkrVQ~~Le~L 235 (289)
+.++|..|..+|++|+++|..| .+++.+++|.+|+|+|||+|||||+|+++| ++|++||.+|++||++|+.|
T Consensus 16 pi~kI~~I~~ev~~L~~~V~~f------~g~k~dkey~~L~E~L~k~LLkLD~IeteG~~~iR~~RK~~Vk~iQ~~l~~L 89 (99)
T 1ugo_A 16 SISRLQEIQREVKAIEPQVVGF------SGLSDDKNYKRLERILTKQLFEIDSVDTEGKGDIQQARKRAAQETERLLKEL 89 (99)
T ss_dssp THHHHHHHHHHHHHSHHHHHTC------CCCTTSSHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHh------cCCchhHHHHHHHHHHHHHHHHHcCcCcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888999999999999998 446689999999999999999999999999 56999999999999999999
Q ss_pred HHHH
Q 022980 236 DNLK 239 (289)
Q Consensus 236 D~lk 239 (289)
|...
T Consensus 90 D~k~ 93 (99)
T 1ugo_A 90 EQNA 93 (99)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 9854
No 5
>3a8y_C BAG family molecular chaperone regulator 5; BAG domain, HSP70, ATPase domain, protein complex, triple helix, structural genomics, NPPSFA; 2.30A {Homo sapiens}
Probab=99.78 E-value=2.9e-19 Score=150.08 Aligned_cols=82 Identities=27% Similarity=0.314 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhhhHHHHHHHHHhhcCCCCchh--HHHHHHHHHHHHHHHHHH
Q 022980 157 KALQAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIEAEGE--AKVQRKTEVRRVQKFHET 234 (289)
Q Consensus 157 ka~~aI~~i~~evd~La~~v~~~e~~~~~g~k~~eke~~~LsE~LM~~LLKLD~Ie~eGd--aR~~RK~~VkrVQ~~Le~ 234 (289)
.++.+|..|..+|++|+++|..| .+++.+++|.+|+|+|||+|||||+|+++|+ +|++||.+|++||++|+.
T Consensus 31 p~~~aI~~V~~eVd~L~~eV~~F------~G~~~dkey~~L~E~L~k~LLKLD~IdteGd~~vR~aRK~aVk~VQ~~Le~ 104 (142)
T 3a8y_C 31 PSHKAVWNVLGNLSEIQGEVLSF------DGNRTDKNYIRLEELLTKQLLALDAVDPQGEEKCKAARKQAVRLAQNILSY 104 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC------CSCTTSHHHHHHHHHHHHHHHHHHTCCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHh------cCCchHHHHHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999988 5569999999999999999999999999995 999999999999999999
Q ss_pred HHHHHhhcCC
Q 022980 235 LDNLKAINSN 244 (289)
Q Consensus 235 LD~lk~~n~~ 244 (289)
||..+..+..
T Consensus 105 LD~k~~e~~~ 114 (142)
T 3a8y_C 105 LDLKSDEWEY 114 (142)
T ss_dssp HHHHHCBCCC
T ss_pred HHHhhHHHHH
Confidence 9998766543
No 6
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.78 E-value=7.3e-19 Score=138.62 Aligned_cols=77 Identities=22% Similarity=0.333 Sum_probs=72.5
Q ss_pred CCCcEEEEEEeCCeEE-EEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEeeCCC
Q 022980 53 GGPVIRINVARGPSQY-EVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELTN 130 (289)
Q Consensus 53 ~~~~I~V~Vk~g~~~~-~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~~~s 130 (289)
...+|+|+|+|+++.| .|+|++++||++||++|++.+|||+++|||+|+|+.++|+ +|++|||++|++|+|++++..
T Consensus 4 ~~~~m~i~Vk~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~~ 81 (96)
T 1wgg_A 4 GSSGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSADA 81 (96)
T ss_dssp CCCEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCCC
T ss_pred CCcEEEEEEEECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecchh
Confidence 4568999999999999 6999999999999999999999999999999999999888 999999999999999997764
No 7
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.76 E-value=2.2e-18 Score=133.80 Aligned_cols=78 Identities=28% Similarity=0.457 Sum_probs=73.4
Q ss_pred CCCcEEEEEEeCCeEEEE-EecCCCcHHHHHHHHHHHhCCCCCCcEEE---EcCeecCCchhhhhcCCCCCCEEEEEeeC
Q 022980 53 GGPVIRINVARGPSQYEV-HVPARSTFGDLKKAISEKTGLDPQEQKVL---FRGKEKEDNEHLDVSGMKDKSKVLLLEEL 128 (289)
Q Consensus 53 ~~~~I~V~Vk~g~~~~~V-~V~a~sTvgdLK~~I~e~TGvpp~~QKLi---ykGK~ldd~~~L~~~GVKdgskL~Lv~~~ 128 (289)
..++|+|+|+|+++.|.| +|++++||++||++|++.+||||++|||+ |+|+.++|+.+|++|||++|++|+|++++
T Consensus 4 ~~~~m~i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 4 GSSGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp CCCSCCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred CCceEEEEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence 446799999999999999 99999999999999999999999999999 99999999999999999999999999876
Q ss_pred CC
Q 022980 129 TN 130 (289)
Q Consensus 129 ~s 130 (289)
+.
T Consensus 84 ~~ 85 (90)
T 1v5t_A 84 ES 85 (90)
T ss_dssp SS
T ss_pred cc
Confidence 53
No 8
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.74 E-value=6e-18 Score=132.86 Aligned_cols=79 Identities=27% Similarity=0.423 Sum_probs=72.3
Q ss_pred CCCCCcEEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEeeCCC
Q 022980 51 VSGGPVIRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELTN 130 (289)
Q Consensus 51 ~~~~~~I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~~~s 130 (289)
.+...+|+|+|+|+++.|.|+|++++||++||++|++.+||||++|||+|+|+.++|. +|.+|||++|++|+|++.+..
T Consensus 12 ~~~~~~~~i~Vk~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ldd~-tL~~~~i~~g~~i~lv~~~~~ 90 (95)
T 1v86_A 12 GVGKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPEDK-TLREIKVTSGAKIMVVGSTIS 90 (95)
T ss_dssp CCCCCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCSSS-BHHHHCCCTTEEEEECCSSCC
T ss_pred CCCCceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCCcC-cHHHCCCCCCCEEEEEecccc
Confidence 3355679999999999999999999999999999999999999999999999999665 999999999999999986543
No 9
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=2.6e-17 Score=127.47 Aligned_cols=78 Identities=23% Similarity=0.480 Sum_probs=71.3
Q ss_pred CCCcEEEEEEeCCeEEEEEecCC-----CcHHHHHHHHHHHhCCCCCCcEEEEcCeecCC-chhhhhcCCCCCCEEEEEe
Q 022980 53 GGPVIRINVARGPSQYEVHVPAR-----STFGDLKKAISEKTGLDPQEQKVLFRGKEKED-NEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 53 ~~~~I~V~Vk~g~~~~~V~V~a~-----sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd-~~~L~~~GVKdgskL~Lv~ 126 (289)
...+|+|+|+|++..|.|+|+++ .||++||++|++.+|+|+++|||+|+|+.++| +.+|.+|||++|++|+|++
T Consensus 4 ~~~~~~v~Vk~~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~ 83 (92)
T 1wxv_A 4 GSSGLTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIG 83 (92)
T ss_dssp CCSSEEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEES
T ss_pred CCCeEEEEEEECCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEe
Confidence 34689999999889999999996 99999999999999999999999999999776 6689999999999999998
Q ss_pred eCCC
Q 022980 127 ELTN 130 (289)
Q Consensus 127 ~~~s 130 (289)
.+..
T Consensus 84 ~~~~ 87 (92)
T 1wxv_A 84 KKNS 87 (92)
T ss_dssp CCSC
T ss_pred cCCC
Confidence 6554
No 10
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.71 E-value=6.2e-17 Score=119.99 Aligned_cols=72 Identities=25% Similarity=0.482 Sum_probs=68.9
Q ss_pred EEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEeeC
Q 022980 57 IRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL 128 (289)
Q Consensus 57 I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~~ 128 (289)
|.|+|++++..+.++|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|.+|||++|++|+|+.++
T Consensus 5 m~i~vk~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 5 LNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEECCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 899999988899999999999999999999999999999999999999999999999999999999998754
No 11
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=8.8e-17 Score=132.61 Aligned_cols=91 Identities=22% Similarity=0.288 Sum_probs=82.3
Q ss_pred ccceeeCCCceeeeecCCCCCCCCCCCCCCCCCCcEEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEc
Q 022980 22 VDWEMRPGGMLVQRRDDDNYDHQDGAAASVSGGPVIRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFR 101 (289)
Q Consensus 22 ~~we~rpggmlvq~r~~~~~~~~~~~~~~~~~~~~I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiyk 101 (289)
..||.+|+|+.+++-+ ...|+|+|++.+..+.|.|++++||++||++|++.+|+|+++|||+|+
T Consensus 14 ~~~~~~~~~s~~~~~~----------------~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 77 (125)
T 1j8c_A 14 SRGPAAAQGSAAAPAE----------------PKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFA 77 (125)
T ss_dssp CCCSCCCCCSSSCCCC----------------CCCEEEEEECSSCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEET
T ss_pred hhCCcCCCCCCcccCC----------------CCcEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEEC
Confidence 4799999999888722 246999999877889999999999999999999999999999999999
Q ss_pred CeecCCchhhhhcCCCCCCEEEEEeeC
Q 022980 102 GKEKEDNEHLDVSGMKDKSKVLLLEEL 128 (289)
Q Consensus 102 GK~ldd~~~L~~~GVKdgskL~Lv~~~ 128 (289)
|+.++|+.+|.+|||++|++|+|+...
T Consensus 78 Gk~L~D~~tL~dygI~~gstI~lv~~~ 104 (125)
T 1j8c_A 78 GKILKDQDTLIQHGIHDGLTVHLVIKR 104 (125)
T ss_dssp TEEESTTSCGGGTTCSSSEEEEEEEC-
T ss_pred CEEcCCCCCHHHcCCCCCCEEEEEecc
Confidence 999999999999999999999999754
No 12
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.69 E-value=1e-16 Score=123.92 Aligned_cols=77 Identities=23% Similarity=0.401 Sum_probs=71.5
Q ss_pred CCCCCCcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 50 SVSGGPVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 50 ~~~~~~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
+.++...|.|+|+. +|..+.|.|++++||++||++|++.+|+|+++|||+|+|+.++|+.+|.+|||++|++|+|+.
T Consensus 11 ~~~~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~ 88 (91)
T 3v6c_B 11 GLVPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 88 (91)
T ss_dssp CCCCCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEEC
T ss_pred CCCCCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEE
Confidence 44456789999995 678999999999999999999999999999999999999999999999999999999999985
No 13
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.68 E-value=1.1e-16 Score=126.63 Aligned_cols=73 Identities=22% Similarity=0.311 Sum_probs=68.5
Q ss_pred CCCcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEE
Q 022980 53 GGPVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLL 125 (289)
Q Consensus 53 ~~~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv 125 (289)
.+++|.|+|+. .|+++.|.|.+++||++||++|++++|+||++|+|+|.|+.++|..+|.+|||++|++|.|.
T Consensus 18 ~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 18 GSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred CCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 57899999996 68899999999999999999999999999999999999999999999999999999999884
No 14
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.68 E-value=1.8e-16 Score=118.80 Aligned_cols=72 Identities=25% Similarity=0.234 Sum_probs=68.4
Q ss_pred CcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 55 PVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 55 ~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
+.|.|+|++ +|+.+.++|++++||++||++|++.+|+||++|+|+|+|+.++|+.+|.+|||++|++|+|+.
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~ 75 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNL 75 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 458999998 678999999999999999999999999999999999999999999999999999999999985
No 15
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.67 E-value=2.5e-16 Score=121.13 Aligned_cols=76 Identities=25% Similarity=0.388 Sum_probs=71.4
Q ss_pred CCCcEEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEeeC
Q 022980 53 GGPVIRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL 128 (289)
Q Consensus 53 ~~~~I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~~ 128 (289)
+-.++.+.++++++.+.++|++++||++||++|++.+|+||++|||+|+|+.++|+.+|.+|||++|++|+|+.++
T Consensus 9 ~~~~~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s~ 84 (85)
T 2kd0_A 9 SHSTIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMASQ 84 (85)
T ss_dssp SCCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECCC
T ss_pred cCCcEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEeC
Confidence 3457889999999999999999999999999999999999999999999999999999999999999999999754
No 16
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.67 E-value=2.6e-16 Score=119.59 Aligned_cols=74 Identities=22% Similarity=0.385 Sum_probs=69.9
Q ss_pred CCCcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 53 GGPVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 53 ~~~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
....|.|+|+. .+..+.|.|++++||.+||++|++.+|+|+++|+|+|+|+.++|+.+|.+|||++|++|+|+-
T Consensus 9 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~ 83 (88)
T 3dbh_I 9 SGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVL 83 (88)
T ss_dssp CCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECC
T ss_pred CCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 55679999996 678999999999999999999999999999999999999999999999999999999999985
No 17
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3.5e-16 Score=116.96 Aligned_cols=75 Identities=25% Similarity=0.415 Sum_probs=69.6
Q ss_pred CCCcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 53 GGPVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 53 ~~~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
....|+|+|+. ++..+.++|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|.+|||++|++|+|+..
T Consensus 4 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 79 (81)
T 2dzi_A 4 GSSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVK 79 (81)
T ss_dssp SSSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECC
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence 44679999995 5788999999999999999999999999999999999999999999999999999999999864
No 18
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.66 E-value=3.8e-16 Score=119.43 Aligned_cols=73 Identities=15% Similarity=0.299 Sum_probs=68.2
Q ss_pred CCCcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 53 GGPVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 53 ~~~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
.+..|.|+|++ ++..+.++|++++||++||++|++.+|+|+++|||+|+|+.++|+.+|.+||| +|++|+|+.
T Consensus 14 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~ 87 (88)
T 4eew_A 14 EPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVE 87 (88)
T ss_dssp -CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEE
Confidence 45679999998 57889999999999999999999999999999999999999999999999999 899999974
No 19
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.66 E-value=3.8e-16 Score=120.10 Aligned_cols=74 Identities=16% Similarity=0.205 Sum_probs=69.3
Q ss_pred CcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCee-cCCchhhhhcCCCCCCEEEEEeeC
Q 022980 55 PVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKE-KEDNEHLDVSGMKDKSKVLLLEEL 128 (289)
Q Consensus 55 ~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~-ldd~~~L~~~GVKdgskL~Lv~~~ 128 (289)
.-|+|+|+. .|+.+.++|++++||++||++|++.+|+|+++|||+|+|+. ++|+.+|.+|||++|++|+|+..|
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p 84 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS 84 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence 458999986 67899999999999999999999999999999999999999 999999999999999999998754
No 20
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=99.65 E-value=1.2e-16 Score=133.32 Aligned_cols=110 Identities=17% Similarity=0.294 Sum_probs=91.5
Q ss_pred CCCEEEEEeeCCCCCCCCCcCCCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------CCCc
Q 022980 118 DKSKVLLLEELTNKEKKPKEVKDSPEKKHEYAKDSEEMRKALQAIAGVRAEVDKLSERVASLEVAVNGGT------KVPS 191 (289)
Q Consensus 118 dgskL~Lv~~~~s~e~k~~~~~~~pee~~~e~~k~~~i~ka~~aI~~i~~evd~La~~v~~~e~~~~~g~------k~~e 191 (289)
+|++|||+|.+.+ |+++ .+.++...+++++. .+..+++.+..++..++++|.... ++.+
T Consensus 1 ~G~KvMviGkK~~-----------peee-~~lKkL~dveksv~---~~~k~l~~l~~el~~iekGFL~k~l~~ea~~kl~ 65 (135)
T 1i6z_A 1 GSPEFMLIGEKSN-----------PEEE-VELKKLKDLEVSAE---KIANHLQELNKELSGIQQGFLAKELQAEALCKLD 65 (135)
T ss_dssp CCCCCSSSCCCCC-----------HHHH-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHH
T ss_pred CCceEEEeCCCCC-----------hHHH-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcchhhhhhhhHHHHHH
Confidence 6999999997665 4444 67777777777654 556689999999999988776654 3568
Q ss_pred hhhhhhHHHHHHHHHhhcCCCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022980 192 EELDTSAELLMKELLKLDGIEA---EGEAKVQRKTEVRRVQKFHETLDNLKAIN 242 (289)
Q Consensus 192 ke~~~LsE~LM~~LLKLD~Ie~---eGdaR~~RK~~VkrVQ~~Le~LD~lk~~n 242 (289)
|++..++|.+|+.|++||++.. +.++|.+||.+|++||.+|+++|.+.++-
T Consensus 66 Krik~~~E~~Mk~LE~LDs~~ip~~~~~~R~kRK~lV~~iQ~~L~~~D~l~~~~ 119 (135)
T 1i6z_A 66 RKVKATIEQFMKILEEIDTMVLPEQFKDSRLKRKNLVKKVQVFLAECDTVEQYI 119 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999973 33999999999999999999999999763
No 21
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.65 E-value=7.4e-16 Score=118.30 Aligned_cols=75 Identities=15% Similarity=0.292 Sum_probs=70.0
Q ss_pred CCcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEeeCC
Q 022980 54 GPVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELT 129 (289)
Q Consensus 54 ~~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~~~ 129 (289)
+++|.|+|++ .+..+.|+|++.+||++||++|++.+|+|+++|||+|+|+.++|+.+|.+||| +|++|+|+....
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~ 78 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAP 78 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCC
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCC
Confidence 4689999998 57889999999999999999999999999999999999999999999999999 899999997543
No 22
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=8e-16 Score=117.04 Aligned_cols=76 Identities=24% Similarity=0.393 Sum_probs=70.9
Q ss_pred CCCcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEeeC
Q 022980 53 GGPVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL 128 (289)
Q Consensus 53 ~~~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~~ 128 (289)
+++.|+|+|++ .+..+.++|++++||.+||++|++.+|+|+++|+|+|+|+.++|+.+|.+|||++|++|+|+...
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (87)
T 1wh3_A 4 GSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKK 80 (87)
T ss_dssp CSSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECS
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEec
Confidence 45789999998 57889999999999999999999999999999999999999999999999999999999998643
No 23
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.65 E-value=8.8e-16 Score=116.15 Aligned_cols=75 Identities=16% Similarity=0.264 Sum_probs=68.8
Q ss_pred CCcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHH---hCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEeeC
Q 022980 54 GPVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEK---TGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL 128 (289)
Q Consensus 54 ~~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~---TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~~ 128 (289)
+.+|.|+|++ ++..+.++|++++||++||++|++. +|+|+++|+|+|+|+.++|+.+|.+|||++|++|+|+..+
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence 3569999998 4788999999999999999999998 9999999999999999999999999999999999999754
No 24
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=3.6e-16 Score=122.81 Aligned_cols=78 Identities=24% Similarity=0.399 Sum_probs=68.5
Q ss_pred CCCCCCcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 50 SVSGGPVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 50 ~~~~~~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
+...+..|+|+|+. .++.+.|.|++.+||.+||++|++.+|+|+++|||+|+|+.++|+.+|.+|||++|++|+|+..
T Consensus 16 ~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~r 94 (98)
T 4hcn_B 16 LYFQGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 94 (98)
T ss_dssp ------CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECB
T ss_pred CCCCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence 33455679999995 6788999999999999999999999999999999999999999999999999999999999853
No 25
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.64 E-value=7.9e-16 Score=120.63 Aligned_cols=77 Identities=19% Similarity=0.283 Sum_probs=71.3
Q ss_pred CCCCcEEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCc-hhhhhcCCCCCCEEEEEeeC
Q 022980 52 SGGPVIRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDN-EHLDVSGMKDKSKVLLLEEL 128 (289)
Q Consensus 52 ~~~~~I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~-~~L~~~GVKdgskL~Lv~~~ 128 (289)
+....|.|+|++.+..+.|+|++++||++||++|++.+|+|+++|+|+|+|+.++|+ .+|.+|||++|++|+|+...
T Consensus 11 ~~~~~~~I~Vk~~~~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~ 88 (94)
T 2kan_A 11 AAVRKIHVTVKFPSKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKS 88 (94)
T ss_dssp SSSCCEEEEEECSSCEEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECC
T ss_pred cCCCCEEEEEEcCCcEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeC
Confidence 466789999998655899999999999999999999999999999999999999888 99999999999999999754
No 26
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=1.2e-15 Score=120.88 Aligned_cols=76 Identities=24% Similarity=0.363 Sum_probs=70.3
Q ss_pred CCCcEEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEeeC
Q 022980 53 GGPVIRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL 128 (289)
Q Consensus 53 ~~~~I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~~ 128 (289)
...+|+|+|++.+.++.++|++++||++||++|++.+|+|+++|||+|+|+.++|+.+|.+|||++|++|+|+...
T Consensus 19 ~~~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~ 94 (100)
T 1yqb_A 19 SPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKR 94 (100)
T ss_dssp CTTEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECC
T ss_pred CCCeEEEEEEcCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcC
Confidence 5578999999855468999999999999999999999999999999999999999999999999999999999754
No 27
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.64 E-value=9.3e-16 Score=121.59 Aligned_cols=76 Identities=22% Similarity=0.360 Sum_probs=70.7
Q ss_pred CCcEEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEeeCC
Q 022980 54 GPVIRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELT 129 (289)
Q Consensus 54 ~~~I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~~~ 129 (289)
...|.|+|++.+..+.+.|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|.+|||++|++|+|+....
T Consensus 23 ~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~ 98 (101)
T 2klc_A 23 PKIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQ 98 (101)
T ss_dssp CCCEEEEEECSSCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCS
T ss_pred CCeEEEEEEeCCcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCC
Confidence 3569999998778899999999999999999999999999999999999999999999999999999999997543
No 28
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.64 E-value=3.3e-16 Score=125.20 Aligned_cols=73 Identities=14% Similarity=0.332 Sum_probs=67.7
Q ss_pred cEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEeeC
Q 022980 56 VIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL 128 (289)
Q Consensus 56 ~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~~ 128 (289)
+|+|+|++ +|..+.|.|++++||++||++|++.+|+|+++|||+|+|+.++|+.+|.+|||++|++|+|+..+
T Consensus 1 mm~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~ 74 (106)
T 3m62_B 1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQ 74 (106)
T ss_dssp --CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC
T ss_pred CEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcC
Confidence 47899997 78899999999999999999999999999999999999999999999999999999999999753
No 29
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.64 E-value=1.8e-16 Score=123.44 Aligned_cols=75 Identities=17% Similarity=0.296 Sum_probs=67.7
Q ss_pred cEEEEEEe-CCeEEEEE--ecCCCcHHHHHHHH-HHHhCCCCCCcEEEEcCeecCCchhhhhcCC-CCCCEEEEEeeCCC
Q 022980 56 VIRINVAR-GPSQYEVH--VPARSTFGDLKKAI-SEKTGLDPQEQKVLFRGKEKEDNEHLDVSGM-KDKSKVLLLEELTN 130 (289)
Q Consensus 56 ~I~V~Vk~-g~~~~~V~--V~a~sTvgdLK~~I-~e~TGvpp~~QKLiykGK~ldd~~~L~~~GV-KdgskL~Lv~~~~s 130 (289)
+|.|+||. .+.++.|+ +++++||++||++| ++.+|+|+++|||||+||.++|+.+|++||| .+|++|+|+++|+-
T Consensus 1 mmqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~~~ 80 (87)
T 2lxa_A 1 MVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPNL 80 (87)
T ss_dssp CCEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECCCC
T ss_pred CEEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCCCc
Confidence 47899998 56667776 55999999999999 9999999999999999999999999999999 69999999998764
No 30
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.63 E-value=1.1e-15 Score=115.00 Aligned_cols=73 Identities=26% Similarity=0.429 Sum_probs=68.1
Q ss_pred CcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 55 PVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 55 ~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
++|.|+|++ .+..+.++|++++||.+||++|++.+|+|+++|+|+|+|+.++|+.+|.+|||+++++|+|+-.
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r 75 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLR 75 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECC
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEE
Confidence 469999997 5688999999999999999999999999999999999999999999999999999999999853
No 31
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.63 E-value=1.1e-15 Score=112.42 Aligned_cols=71 Identities=21% Similarity=0.381 Sum_probs=66.5
Q ss_pred EEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 57 IRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 57 I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
|+|+|++ .+..+.++|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|.+|||++|++|+|+..
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLA 72 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 5789997 5788999999999999999999999999999999999999999999999999999999999853
No 32
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.63 E-value=3.9e-16 Score=147.29 Aligned_cols=78 Identities=23% Similarity=0.365 Sum_probs=70.7
Q ss_pred CCCcEEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEE---EcCeecCCchhhhhcCCCCCCEEEEEeeCC
Q 022980 53 GGPVIRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVL---FRGKEKEDNEHLDVSGMKDKSKVLLLEELT 129 (289)
Q Consensus 53 ~~~~I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLi---ykGK~ldd~~~L~~~GVKdgskL~Lv~~~~ 129 (289)
...+|+|+|||+|+.|+|+|++++||++||++|++.|||||++|||| |+|+.++|+.+|++|||++|++|||||+++
T Consensus 2 ~~~~i~i~Vk~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~ 81 (320)
T 3shq_A 2 EVKEVVVIVKWSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTE 81 (320)
T ss_dssp --CEEEEEEEETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC
T ss_pred CCceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccch
Confidence 35679999999999999999999999999999999999999999999 899999999999999999999999999876
Q ss_pred C
Q 022980 130 N 130 (289)
Q Consensus 130 s 130 (289)
.
T Consensus 82 ~ 82 (320)
T 3shq_A 82 A 82 (320)
T ss_dssp -
T ss_pred h
Confidence 5
No 33
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.63 E-value=9.3e-16 Score=118.21 Aligned_cols=71 Identities=21% Similarity=0.381 Sum_probs=66.7
Q ss_pred EEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 57 IRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 57 I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
|.|+|+. .|..+.|.|++++||++||++|++.+|+|+++|||+|+|+.++|+.+|.+|||++|++|+|+-.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~r 72 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLA 72 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECB
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEE
Confidence 5788885 6789999999999999999999999999999999999999999999999999999999999854
No 34
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.62 E-value=3.3e-15 Score=118.84 Aligned_cols=81 Identities=25% Similarity=0.367 Sum_probs=72.4
Q ss_pred CCCCCCCCcEEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 48 AASVSGGPVIRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 48 ~~~~~~~~~I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
+++.....+|+|+|++.+.+|.|+|+.++||++||++|++.+|+++++|||+|+|+.++|+.+|.+|||++|++|+|+..
T Consensus 9 ~~~~~~~~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~ 88 (106)
T 1wx7_A 9 PAPVQDPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIK 88 (106)
T ss_dssp CSCCCCSSEEEEEEECSSCEEEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEEC
T ss_pred CCCCCCCceEEEEEEeCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEc
Confidence 44444566799999985546899999999999999999999999999999999999999999999999999999999975
Q ss_pred C
Q 022980 128 L 128 (289)
Q Consensus 128 ~ 128 (289)
.
T Consensus 89 ~ 89 (106)
T 1wx7_A 89 R 89 (106)
T ss_dssp C
T ss_pred C
Confidence 4
No 35
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.62 E-value=1.9e-15 Score=120.50 Aligned_cols=76 Identities=14% Similarity=0.256 Sum_probs=70.4
Q ss_pred CCCcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEeeC
Q 022980 53 GGPVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL 128 (289)
Q Consensus 53 ~~~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~~ 128 (289)
+...|.|+|++ +|..+.++|++++||++||.+|+..+|+|+++|||+|+|+.++|+.+|.+|||++|++|+|+...
T Consensus 20 ~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~ 96 (106)
T 1ttn_A 20 SGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQ 96 (106)
T ss_dssp -CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCC
T ss_pred CCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 45679999997 67899999999999999999999999999999999999999999999999999999999999743
No 36
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.62 E-value=9.7e-16 Score=122.60 Aligned_cols=73 Identities=21% Similarity=0.178 Sum_probs=68.7
Q ss_pred CCCcEEEEEEeC-CeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEE
Q 022980 53 GGPVIRINVARG-PSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLL 125 (289)
Q Consensus 53 ~~~~I~V~Vk~g-~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv 125 (289)
..++|.|+||.. |+++.|+|++++||++||++|++.+|+|+++|||+|.||.++|+.+|.+|||++|++|+|.
T Consensus 25 ~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 25 AATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp CCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 456799999974 7899999999999999999999999999999999999999999999999999999999986
No 37
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.62 E-value=9.2e-16 Score=115.66 Aligned_cols=73 Identities=27% Similarity=0.438 Sum_probs=67.2
Q ss_pred CcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 55 PVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 55 ~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
.+|.|+|++ .+..+.++|++++||.+||++|++.+|+|+++|+|+|+|+.++|+.+|.+|||+++++|+|+..
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r 75 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLK 75 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEEC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEe
Confidence 468999996 5688999999999999999999999999999999999999999999999999999999999854
No 38
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.62 E-value=1.9e-15 Score=111.08 Aligned_cols=71 Identities=25% Similarity=0.439 Sum_probs=66.5
Q ss_pred EEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 57 IRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 57 I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
|+|+|++ ++..+.++|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|.+|||++|++|+|+..
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLR 72 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEEC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence 5788887 5788999999999999999999999999999999999999999999999999999999999864
No 39
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.62 E-value=1.2e-15 Score=118.82 Aligned_cols=76 Identities=24% Similarity=0.308 Sum_probs=71.1
Q ss_pred CCCcEEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEeeC
Q 022980 53 GGPVIRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL 128 (289)
Q Consensus 53 ~~~~I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~~ 128 (289)
+..+|+|+|++.+..+.++|++++||.+||++|++.+|+|+++|+|+|+|+.++|+.+|.+|||++|++|+|+...
T Consensus 14 ~~~~m~i~Vk~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~ 89 (96)
T 1wx8_A 14 SSRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRS 89 (96)
T ss_dssp CSCEEEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCC
T ss_pred CCCcEEEEEEECCeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeC
Confidence 4467999999977899999999999999999999999999999999999999999999999999999999998653
No 40
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.62 E-value=1.1e-15 Score=121.55 Aligned_cols=76 Identities=17% Similarity=0.300 Sum_probs=67.0
Q ss_pred CCCcEEEEEEe-CCeEEEE--EecCCCcHHHHHHHH-HHHhCCCCCCcEEEEcCeecCCchhhhhcCC-CCCCEEEEEee
Q 022980 53 GGPVIRINVAR-GPSQYEV--HVPARSTFGDLKKAI-SEKTGLDPQEQKVLFRGKEKEDNEHLDVSGM-KDKSKVLLLEE 127 (289)
Q Consensus 53 ~~~~I~V~Vk~-g~~~~~V--~V~a~sTvgdLK~~I-~e~TGvpp~~QKLiykGK~ldd~~~L~~~GV-KdgskL~Lv~~ 127 (289)
..+.|+|+||. +|..|.+ +|++++||++||++| ++.+|+|+++|||||+|+.++|+.+|++||| ++|++|+|+.+
T Consensus 16 ~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvs 95 (98)
T 4a20_A 16 DNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK 95 (98)
T ss_dssp --CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEEC
T ss_pred CCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEe
Confidence 45779999998 4556655 677999999999999 8899999999999999999999999999999 99999999975
Q ss_pred C
Q 022980 128 L 128 (289)
Q Consensus 128 ~ 128 (289)
+
T Consensus 96 k 96 (98)
T 4a20_A 96 P 96 (98)
T ss_dssp C
T ss_pred C
Confidence 3
No 41
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=119.14 Aligned_cols=74 Identities=19% Similarity=0.307 Sum_probs=67.1
Q ss_pred CCCcEEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 53 GGPVIRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 53 ~~~~I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
....|+|+|++ ++.+.++|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|.+|||++|++|+|+..
T Consensus 16 ~~~~m~I~Vk~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~r 89 (93)
T 2l7r_A 16 PRGSMQLFVRA-QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGR 89 (93)
T ss_dssp ----CEEEEES-SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECC
T ss_pred CCCcEEEEEEC-CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence 45679999999 688999999999999999999999999999999999999999999999999999999999853
No 42
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.62 E-value=2.7e-15 Score=111.88 Aligned_cols=72 Identities=24% Similarity=0.342 Sum_probs=66.1
Q ss_pred cEEEEEEe-CCeE-EEEE-ecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 56 VIRINVAR-GPSQ-YEVH-VPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 56 ~I~V~Vk~-g~~~-~~V~-V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
.|.|+|++ .|+. |.++ |++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|.+|||++|++|+|+-.
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r 76 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVR 76 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEEC
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEe
Confidence 48899997 3455 6999 99999999999999999999999999999999999999999999999999999864
No 43
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.61 E-value=1.3e-15 Score=121.94 Aligned_cols=76 Identities=18% Similarity=0.238 Sum_probs=67.5
Q ss_pred CcEEEEEEe---CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEeeCCC
Q 022980 55 PVIRINVAR---GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELTN 130 (289)
Q Consensus 55 ~~I~V~Vk~---g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~~~s 130 (289)
.+|.|++.. ++++++|+|++++||++||++|++.+|+||++|||||.||.++|+.+|++|||++|++||+|.-+.+
T Consensus 16 ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl~lrg~ 94 (100)
T 1wju_A 16 ATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLELKQS 94 (100)
T ss_dssp EEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEECCCCC
T ss_pred EEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEEEECCC
Confidence 356666655 2578999999999999999999999999999999999999999999999999999999988865444
No 44
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.61 E-value=1.6e-15 Score=116.71 Aligned_cols=74 Identities=26% Similarity=0.248 Sum_probs=68.6
Q ss_pred CcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEeeC
Q 022980 55 PVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL 128 (289)
Q Consensus 55 ~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~~ 128 (289)
.+|.|+|++ .|..+.++|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|.+|||++|++|+|+...
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~ 77 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRL 77 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC-
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEc
Confidence 369999998 46889999999999999999999999999999999999999999999999999999999999753
No 45
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.61 E-value=3.4e-16 Score=124.32 Aligned_cols=73 Identities=25% Similarity=0.468 Sum_probs=68.3
Q ss_pred CcEEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 55 PVIRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 55 ~~I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
-.|+|+|++++..+.+.|++++||++||++|++.+|+|+++|||+|+|+.++|+.+|.+|||++|++|+|+.+
T Consensus 27 m~i~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 27 MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 99 (101)
T ss_dssp --CCEEEECSSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCC
T ss_pred cEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 3588999998899999999999999999999999999999999999999999999999999999999999864
No 46
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.61 E-value=4.4e-15 Score=113.52 Aligned_cols=75 Identities=19% Similarity=0.260 Sum_probs=68.9
Q ss_pred CCcEEEEEEe-CC-eEEEE-EecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEeeC
Q 022980 54 GPVIRINVAR-GP-SQYEV-HVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL 128 (289)
Q Consensus 54 ~~~I~V~Vk~-g~-~~~~V-~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~~ 128 (289)
..+|.|+|++ .+ ..+.| +|++++||.+||++|++.+|+|+++|+|+|+|+.++|+.+|.+|||++|++|+|+...
T Consensus 5 ~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 82 (89)
T 1wy8_A 5 SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRP 82 (89)
T ss_dssp SSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECC
T ss_pred CCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeC
Confidence 4679999997 35 68999 5999999999999999999999999999999999999999999999999999998643
No 47
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.61 E-value=3.9e-15 Score=116.27 Aligned_cols=72 Identities=17% Similarity=0.341 Sum_probs=67.1
Q ss_pred EEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHH---hCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEeeC
Q 022980 57 IRINVAR-GPSQYEVHVPARSTFGDLKKAISEK---TGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL 128 (289)
Q Consensus 57 I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~---TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~~ 128 (289)
|+|+|++ .|..+.++|++++||++||++|++. +|+|+++|+|+|+|+.++|+.+|.+|||++|++|+|+..+
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~ 76 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 76 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESS
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeC
Confidence 5789998 5788999999999999999999999 8999999999999999999999999999999999998753
No 48
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.60 E-value=3.8e-15 Score=118.00 Aligned_cols=76 Identities=17% Similarity=0.279 Sum_probs=68.0
Q ss_pred CCcEEEEEEe--CC---eEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCc-hhhhhcCCCCCCEEEEEee
Q 022980 54 GPVIRINVAR--GP---SQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDN-EHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 54 ~~~I~V~Vk~--g~---~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~-~~L~~~GVKdgskL~Lv~~ 127 (289)
...|+|+|++ ++ +.|.|+|++++||++||++|++.+|+|+++|+|+|+|+.++|+ .+|.+|||++|++|+|+..
T Consensus 5 ~~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~ 84 (102)
T 1v5o_A 5 SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQK 84 (102)
T ss_dssp SCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred CCeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEEC
Confidence 3568888887 54 7899999999999999999999999999999999999998766 6999999999999999975
Q ss_pred CC
Q 022980 128 LT 129 (289)
Q Consensus 128 ~~ 129 (289)
..
T Consensus 85 ~~ 86 (102)
T 1v5o_A 85 DN 86 (102)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 49
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.59 E-value=4e-15 Score=115.31 Aligned_cols=71 Identities=25% Similarity=0.442 Sum_probs=67.1
Q ss_pred EEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 57 IRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 57 I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
|.|+|++ .+..+.|+|++++||.+||++|++.+|+|+++|+|+|+|+.++|+.+|.+|||++|++|+|+..
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r 73 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 73 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEE
Confidence 6889996 5788999999999999999999999999999999999999999999999999999999999964
No 50
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.59 E-value=2.7e-15 Score=116.39 Aligned_cols=74 Identities=18% Similarity=0.223 Sum_probs=66.4
Q ss_pred CCcEEEEEEeC-Ce--EEEEEecCCCcHHHHHHHHHHHh--CCCCCCcEEEEcCeecCCchhhhhc--CCCCCCEEEEEe
Q 022980 54 GPVIRINVARG-PS--QYEVHVPARSTFGDLKKAISEKT--GLDPQEQKVLFRGKEKEDNEHLDVS--GMKDKSKVLLLE 126 (289)
Q Consensus 54 ~~~I~V~Vk~g-~~--~~~V~V~a~sTvgdLK~~I~e~T--Gvpp~~QKLiykGK~ldd~~~L~~~--GVKdgskL~Lv~ 126 (289)
...|+|+|++. +. .+.|++++++||++||++|++.+ |+|+++|||||+|+.++|+.+|.+| ||+++++|+|+.
T Consensus 5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~ 84 (93)
T 1wgd_A 5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC 84 (93)
T ss_dssp SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred CcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEe
Confidence 45699999984 34 46777879999999999999999 9999999999999999999999999 999999999986
Q ss_pred e
Q 022980 127 E 127 (289)
Q Consensus 127 ~ 127 (289)
.
T Consensus 85 ~ 85 (93)
T 1wgd_A 85 N 85 (93)
T ss_dssp C
T ss_pred C
Confidence 4
No 51
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.59 E-value=3.8e-15 Score=119.06 Aligned_cols=78 Identities=19% Similarity=0.267 Sum_probs=70.0
Q ss_pred CCCCcEEEEEEeCCe----EEEEEecC---------CCcHHHHHHHHHHHh--CCCCCC-cEEEEcCeecCCchhhhhcC
Q 022980 52 SGGPVIRINVARGPS----QYEVHVPA---------RSTFGDLKKAISEKT--GLDPQE-QKVLFRGKEKEDNEHLDVSG 115 (289)
Q Consensus 52 ~~~~~I~V~Vk~g~~----~~~V~V~a---------~sTvgdLK~~I~e~T--Gvpp~~-QKLiykGK~ldd~~~L~~~G 115 (289)
+....|+|+||+.+. .|.|+|++ ++||++||++|++.+ |+|+++ |||+|+|+.++|+.+|.+||
T Consensus 8 ~~~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~ 87 (107)
T 1x1m_A 8 MSLSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYG 87 (107)
T ss_dssp CCCCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHT
T ss_pred ccCCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcC
Confidence 456679999998544 89999776 599999999999999 999999 99999999999999999999
Q ss_pred CCCCCEEEEEeeCC
Q 022980 116 MKDKSKVLLLEELT 129 (289)
Q Consensus 116 VKdgskL~Lv~~~~ 129 (289)
|++|++|+|+....
T Consensus 88 i~~g~~i~lv~~~~ 101 (107)
T 1x1m_A 88 IQPGSTVHVLRKSW 101 (107)
T ss_dssp CCTTCEEEEEESSC
T ss_pred CCCCCEEEEEeCCC
Confidence 99999999997544
No 52
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2.5e-15 Score=120.04 Aligned_cols=75 Identities=13% Similarity=0.226 Sum_probs=67.6
Q ss_pred CCCcEEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEE-cCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 53 GGPVIRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLF-RGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 53 ~~~~I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiy-kGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
...++.+.|+|+++.|+|+|++++||++||++|++.|||||++|||+| +|+.++|+.+|++|||++|++|+|+-.
T Consensus 6 ~~~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gkL~D~~tLs~~~I~~gstL~lvl~ 81 (100)
T 2dzm_A 6 SGRMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSLHLPKNNSLYVLTP 81 (100)
T ss_dssp CCCEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSCCCTTSBHHHHCCCSEEEEEECCS
T ss_pred CcceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCCCCCcCCHHHcCCCCCCEEEEEec
Confidence 456788999999999999999999999999999999999999999996 443488899999999999999999853
No 53
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.57 E-value=7.9e-15 Score=112.99 Aligned_cols=72 Identities=24% Similarity=0.451 Sum_probs=66.3
Q ss_pred cEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 56 VIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 56 ~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
-|.|+|+. .|+.+.++|++++||++||++|++.+|+|+++|||+|+|+.++|+.+|.+|||++|++|+|+..
T Consensus 9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r 81 (88)
T 1sif_A 9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 81 (88)
T ss_dssp -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-
T ss_pred ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 37888874 7789999999999999999999999999999999999999999999999999999999999854
No 54
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.57 E-value=7.9e-15 Score=125.37 Aligned_cols=78 Identities=26% Similarity=0.419 Sum_probs=69.8
Q ss_pred CCCCCCcEEEEEE-eCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 50 SVSGGPVIRINVA-RGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 50 ~~~~~~~I~V~Vk-~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
+.+++..|.|+|+ ++|+.+.|+|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|.+|||++|++|+|+..
T Consensus 14 ~~~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~ 92 (172)
T 3u30_A 14 LVPRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 92 (172)
T ss_dssp -----CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEEC
T ss_pred CCCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeec
Confidence 4445678999999 57899999999999999999999999999999999999999999999999999999999999864
No 55
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.57 E-value=1.1e-14 Score=113.90 Aligned_cols=72 Identities=26% Similarity=0.455 Sum_probs=67.2
Q ss_pred EEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEeeC
Q 022980 57 IRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL 128 (289)
Q Consensus 57 I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~~ 128 (289)
|+|+|++ ++..+.+.|++++||++||.+|++.+|+|+++|+|+|+|+.++|+.+|.+|||++|++|+|+...
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~ 73 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 5788887 57889999999999999999999999999999999999999999999999999999999998653
No 56
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.56 E-value=4.5e-15 Score=118.09 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=62.6
Q ss_pred CCCCCCcEEEEEEeC-Ce--EEEEEecCCCcHHHHHHHHHHH-hCCCC-CCcEEEEcCeecCCchhhhhc--CCCCCCEE
Q 022980 50 SVSGGPVIRINVARG-PS--QYEVHVPARSTFGDLKKAISEK-TGLDP-QEQKVLFRGKEKEDNEHLDVS--GMKDKSKV 122 (289)
Q Consensus 50 ~~~~~~~I~V~Vk~g-~~--~~~V~V~a~sTvgdLK~~I~e~-TGvpp-~~QKLiykGK~ldd~~~L~~~--GVKdgskL 122 (289)
.......|.|+|++. +. .+.|+|++++||++||++|++. .|+|| ++|||||+||.++|+.+|.+| ||++|++|
T Consensus 17 ~~~~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~ti 96 (99)
T 2kdb_A 17 LYFQGHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMV 96 (99)
T ss_dssp ------CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEE
T ss_pred CCCCCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEE
Confidence 334557799999973 33 4688899999999999999996 57765 999999999999999999999 99999999
Q ss_pred EEE
Q 022980 123 LLL 125 (289)
Q Consensus 123 ~Lv 125 (289)
+|+
T Consensus 97 hLv 99 (99)
T 2kdb_A 97 HLV 99 (99)
T ss_dssp EEC
T ss_pred EeC
Confidence 985
No 57
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.55 E-value=1.2e-14 Score=117.07 Aligned_cols=73 Identities=25% Similarity=0.420 Sum_probs=68.7
Q ss_pred CcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 55 PVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 55 ~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
..|.|+|+. .++.+.|.|++.+||++||.+|+..+|+|+++|||+|+|+.++|+.+|.+|||++|++|+|+..
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~r 107 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 107 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEEC
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence 469999995 6789999999999999999999999999999999999999999999999999999999999853
No 58
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.55 E-value=1.7e-14 Score=115.93 Aligned_cols=75 Identities=24% Similarity=0.386 Sum_probs=70.0
Q ss_pred CCCcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 53 GGPVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 53 ~~~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
....|+|+|++ .+..+.++|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|.+|||++|++|+|+..
T Consensus 32 ~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~r 107 (111)
T 2ojr_A 32 ELLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 107 (111)
T ss_dssp GSSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEEC
T ss_pred CCCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 45689999997 5788999999999999999999999999999999999999999999999999999999999863
No 59
>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*
Probab=99.54 E-value=2e-14 Score=116.47 Aligned_cols=98 Identities=17% Similarity=0.282 Sum_probs=84.4
Q ss_pred CchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------CCCchhhhhhHHHHHHHHHhhcCCCC-
Q 022980 141 SPEKKHEYAKDSEEMRKALQAIAGVRAEVDKLSERVASLEVAVNGGT------KVPSEELDTSAELLMKELLKLDGIEA- 213 (289)
Q Consensus 141 ~pee~~~e~~k~~~i~ka~~aI~~i~~evd~La~~v~~~e~~~~~g~------k~~eke~~~LsE~LM~~LLKLD~Ie~- 213 (289)
+|+|+ .+.++...+++++.. +..+++.+..++.+++++|.... ++.+|++..++|.||+.|++||++..
T Consensus 3 ~peeE-~~lK~L~~veksv~~---~~kkl~~~~~el~~iekGFL~kel~~eal~kldKrik~~~E~~MK~LE~lDsl~i~ 78 (114)
T 1hx1_B 3 SPQEE-VELKKLKHLEKSVEK---IADQLEELNKELTGIQQGFLPKDLQAEALCKLDRRVKATIEQFMKILEEIDTLILP 78 (114)
T ss_dssp CHHHH-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHSCSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred ChHHH-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHcccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Confidence 46666 678888888877654 55699999999999999888755 57899999999999999999999973
Q ss_pred --chhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022980 214 --EGEAKVQRKTEVRRVQKFHETLDNLKAIN 242 (289)
Q Consensus 214 --eGdaR~~RK~~VkrVQ~~Le~LD~lk~~n 242 (289)
..++|.+||.+|++||++|.++|.+.++-
T Consensus 79 e~~~~~R~kRK~lV~~iQ~~l~~cD~l~~~i 109 (114)
T 1hx1_B 79 ENFKDSRLKRKGLVKKVQAFLAECDTVEQNI 109 (114)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 44999999999999999999999998763
No 60
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.54 E-value=1.6e-14 Score=108.02 Aligned_cols=73 Identities=21% Similarity=0.381 Sum_probs=67.9
Q ss_pred CcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 55 PVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 55 ~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
+.|.|+|+. .|..+.+.|.+++||++||+.|++..|+|+++|+|+|.|+.++|+.+|.+|||++|++|+|+..
T Consensus 2 ~~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~ 75 (79)
T 2uyz_B 2 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 75 (79)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEEC
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEe
Confidence 358999996 5678999999999999999999999999999999999999999999999999999999999853
No 61
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.53 E-value=2.4e-14 Score=112.45 Aligned_cols=75 Identities=21% Similarity=0.396 Sum_probs=69.5
Q ss_pred CCCcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 53 GGPVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 53 ~~~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
+...|+|+|+. .|..+.+.|.+.+||++||++|++..|+|+++|+|+|.|+.++|+.+|.+|||++|++|+|+..
T Consensus 18 ~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~ 93 (97)
T 1wyw_B 18 EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 93 (97)
T ss_dssp -CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEES
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEe
Confidence 45679999996 5788999999999999999999999999999999999999999999999999999999999853
No 62
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.53 E-value=1.8e-14 Score=115.57 Aligned_cols=73 Identities=19% Similarity=0.180 Sum_probs=67.9
Q ss_pred CcEEEEEEe----CCeEEEEEecC-CCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 55 PVIRINVAR----GPSQYEVHVPA-RSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 55 ~~I~V~Vk~----g~~~~~V~V~a-~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
..|+|+|+. ++..+.++|++ ++||++||++|+..+|+|+++|+|+|+|+.++|+.+|.+|||++|++|+|+..
T Consensus 26 ~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r 103 (111)
T 1we6_A 26 GPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLR 103 (111)
T ss_dssp SCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECS
T ss_pred CcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEE
Confidence 458999986 46789999998 99999999999999999999999999999999999999999999999999854
No 63
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=4.4e-14 Score=115.93 Aligned_cols=78 Identities=19% Similarity=0.190 Sum_probs=70.5
Q ss_pred CCCcEEEEEE--eCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEeeCCC
Q 022980 53 GGPVIRINVA--RGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELTN 130 (289)
Q Consensus 53 ~~~~I~V~Vk--~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~~~s 130 (289)
-.+.|+|+|+ .+++.+.+.|++++||++||+.|+..+++|+++|+|||.||.+.|+++|.+|||++|.+|+|+.....
T Consensus 12 ~~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~ 91 (118)
T 2daf_A 12 EDSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTN 91 (118)
T ss_dssp CSSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESC
T ss_pred cCccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCC
Confidence 4566888877 35789999999999999999999999999999999999999999999999999999999999975443
No 64
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.52 E-value=5e-14 Score=111.19 Aligned_cols=75 Identities=19% Similarity=0.248 Sum_probs=66.9
Q ss_pred CCCCcEEEEEEeCC---eEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEc--Ce---e-cCCchhhhhcCCCCCCEE
Q 022980 52 SGGPVIRINVARGP---SQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFR--GK---E-KEDNEHLDVSGMKDKSKV 122 (289)
Q Consensus 52 ~~~~~I~V~Vk~g~---~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiyk--GK---~-ldd~~~L~~~GVKdgskL 122 (289)
.+...|+|+|++.. ..+++.|++++||++||++|+..+|+||++|||+|. |+ . ++|+.+|.+|||++|++|
T Consensus 11 ~~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gsti 90 (95)
T 2kjr_A 11 GKSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRL 90 (95)
T ss_dssp CCCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEE
T ss_pred CCCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEE
Confidence 35678999999843 379999999999999999999999999999999998 55 4 489999999999999999
Q ss_pred EEEe
Q 022980 123 LLLE 126 (289)
Q Consensus 123 ~Lv~ 126 (289)
+|+.
T Consensus 91 hlvD 94 (95)
T 2kjr_A 91 HVVD 94 (95)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9874
No 65
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.52 E-value=2.7e-14 Score=110.70 Aligned_cols=71 Identities=11% Similarity=0.189 Sum_probs=65.0
Q ss_pred cEEEEEEe---CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEc-------CeecCCchhhhhcCCCCCCEEEEE
Q 022980 56 VIRINVAR---GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFR-------GKEKEDNEHLDVSGMKDKSKVLLL 125 (289)
Q Consensus 56 ~I~V~Vk~---g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiyk-------GK~ldd~~~L~~~GVKdgskL~Lv 125 (289)
.++|.|.| +...+++.|++..||++||++|+..+|+||++|||+|+ |+.++|+.+|.+|||++|++|+|+
T Consensus 2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlv 81 (86)
T 4b6w_A 2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVV 81 (86)
T ss_dssp EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEE
Confidence 57888887 44668999999999999999999999999999999985 778999999999999999999999
Q ss_pred e
Q 022980 126 E 126 (289)
Q Consensus 126 ~ 126 (289)
.
T Consensus 82 d 82 (86)
T 4b6w_A 82 D 82 (86)
T ss_dssp E
T ss_pred e
Confidence 5
No 66
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.28 E-value=8.9e-16 Score=113.83 Aligned_cols=71 Identities=18% Similarity=0.359 Sum_probs=65.8
Q ss_pred EEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 57 IRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 57 I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
|+|+|++ +|..+.++|++++||++||+.|++.+|+|+++|+|+|+|+.++|+.+|.+|||++|++|+|+..
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~r 72 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQR 72 (76)
Confidence 5688887 5678899999999999999999999999999999999999999999999999999999998853
No 67
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.51 E-value=3.4e-14 Score=116.76 Aligned_cols=72 Identities=18% Similarity=0.173 Sum_probs=67.9
Q ss_pred cEEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCC-------CCCEEEEEee
Q 022980 56 VIRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMK-------DKSKVLLLEE 127 (289)
Q Consensus 56 ~I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVK-------dgskL~Lv~~ 127 (289)
.|.|+|+++..++.++|.+.+||++||++|+..+||||++|||||.||.++|+.+|++|||+ ++++|+|+-.
T Consensus 2 ~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 2 DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp EEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred cEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 37899998888899999999999999999999999999999999999999999999999999 7999999864
No 68
>1t7s_A BAG-1 cochaperone; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.80A {Caenorhabditis elegans} SCOP: a.7.7.1
Probab=99.51 E-value=2.9e-14 Score=118.98 Aligned_cols=107 Identities=20% Similarity=0.142 Sum_probs=88.8
Q ss_pred CEEEEEeeCCCCCCCCCcCCCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCC------CCCch
Q 022980 120 SKVLLLEELTNKEKKPKEVKDSPEKKHEYAKDSEEMRKALQAIAGVRAEVDKLS-ERVASLEVAVNGGT------KVPSE 192 (289)
Q Consensus 120 skL~Lv~~~~s~e~k~~~~~~~pee~~~e~~k~~~i~ka~~aI~~i~~evd~La-~~v~~~e~~~~~g~------k~~ek 192 (289)
|+||++|.+.+.+ ++ .+.++...+++++..+ ..+++.+. .++..++++|...+ ++.+|
T Consensus 1 ~KvMvlGkk~~~e-----------ed-~~lK~L~~~Ek~~~~~---~~kl~~~n~~el~~iekGFL~k~l~~ea~kkldK 65 (137)
T 1t7s_A 1 DKIIVMGGKNALV-----------DD-AGFKMLMQYEKHNLSN---LQKAYDLNLRDVADLERGFLEKPKQVEMGKKLEK 65 (137)
T ss_dssp CCCEEECSSSEEE-----------CH-HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHH
T ss_pred CceeeeCCCCCcc-----------hh-HHHHHHHHHHHHHHHH---HHHHHHccHHHHHHHHHhhhccHhHHhHHHHHHH
Confidence 6899999877633 32 6777777777776554 45888888 89999999888765 35679
Q ss_pred hhhhhHHHHHHHHHhhcCCC--C-----c--hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022980 193 ELDTSAELLMKELLKLDGIE--A-----E--GEAKVQRKTEVRRVQKFHETLDNLKAI 241 (289)
Q Consensus 193 e~~~LsE~LM~~LLKLD~Ie--~-----e--GdaR~~RK~~VkrVQ~~Le~LD~lk~~ 241 (289)
++..++|.+|+.|+.|||+. . + .++|.+||.+|++||.+|.++|.+.++
T Consensus 66 rik~~~E~~MK~LE~LDsl~i~~~~t~~~q~~~~R~KRK~lV~~IQ~~L~~~D~l~~~ 123 (137)
T 1t7s_A 66 KVKYFNEEAERHLETLDGMNIITETTPENQAKRNREKRKTLVNGIQTLLNQNDALLRR 123 (137)
T ss_dssp HHHHHHHHHHHHHHHHHTEEECCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccCCcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999995 2 2 389999999999999999999999986
No 69
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.51 E-value=7.7e-14 Score=108.44 Aligned_cols=73 Identities=14% Similarity=0.201 Sum_probs=66.7
Q ss_pred CCCcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCc-hhhhhcCCCCCCEEEEEeeC
Q 022980 53 GGPVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDN-EHLDVSGMKDKSKVLLLEEL 128 (289)
Q Consensus 53 ~~~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~-~~L~~~GVKdgskL~Lv~~~ 128 (289)
....|+|+|+. .+..+.++|++.+||++||++|++.+ +++|||+|+|+.++|+ .+|.+|||++|++|+|+...
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~ 78 (95)
T 1wia_A 4 GSSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSP 78 (95)
T ss_dssp CCCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCC
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECC
Confidence 34679999997 57889999999999999999999998 8999999999999888 99999999999999999753
No 70
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.50 E-value=7.2e-14 Score=112.83 Aligned_cols=73 Identities=21% Similarity=0.239 Sum_probs=66.6
Q ss_pred CcEEEEEEeC-----------CeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEE
Q 022980 55 PVIRINVARG-----------PSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVL 123 (289)
Q Consensus 55 ~~I~V~Vk~g-----------~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~ 123 (289)
..|+|.|++. |..+.++|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|.+|||++|++|+
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~ 103 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIH 103 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEE
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEE
Confidence 3577777763 56899999999999999999999999999999999999999999999999999999999
Q ss_pred EEee
Q 022980 124 LLEE 127 (289)
Q Consensus 124 Lv~~ 127 (289)
|+-.
T Consensus 104 lv~r 107 (115)
T 1we7_A 104 LALK 107 (115)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 9854
No 71
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.50 E-value=2.3e-14 Score=115.38 Aligned_cols=76 Identities=25% Similarity=0.367 Sum_probs=67.8
Q ss_pred CCCcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCC---------------CcEEEEcCeec-CCchhhhhcC
Q 022980 53 GGPVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQ---------------EQKVLFRGKEK-EDNEHLDVSG 115 (289)
Q Consensus 53 ~~~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~---------------~QKLiykGK~l-dd~~~L~~~G 115 (289)
.+..|+|+|+. .+.+++|+|++++||++||+.|++.+|+||. +|+|+|.|+.+ +|+.+|.+||
T Consensus 4 ~~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dyg 83 (105)
T 1v2y_A 4 GSSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYG 83 (105)
T ss_dssp CCCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHT
T ss_pred CCCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcC
Confidence 34669999985 6889999999999999999999999999984 56999999997 5789999999
Q ss_pred CCCCCEEEEEeeC
Q 022980 116 MKDKSKVLLLEEL 128 (289)
Q Consensus 116 VKdgskL~Lv~~~ 128 (289)
|++|++|+|+-.-
T Consensus 84 I~~g~~l~lv~~l 96 (105)
T 1v2y_A 84 IRNRDEVSFIKKL 96 (105)
T ss_dssp CCSSEEEEEEECS
T ss_pred CCCCCEEEEEehh
Confidence 9999999999643
No 72
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.49 E-value=7e-14 Score=109.32 Aligned_cols=72 Identities=11% Similarity=0.167 Sum_probs=65.8
Q ss_pred CcEEEEEEeCCe--EEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcC---ee----cCCchhhhhcCCCCCCEEEEE
Q 022980 55 PVIRINVARGPS--QYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRG---KE----KEDNEHLDVSGMKDKSKVLLL 125 (289)
Q Consensus 55 ~~I~V~Vk~g~~--~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykG---K~----ldd~~~L~~~GVKdgskL~Lv 125 (289)
..|+|+|++.+. .+++.|++++||++||++|+..+|+||++|||+|.| +. ++|+.+|.+|||++|++|+|+
T Consensus 6 ~~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~ 85 (95)
T 1v6e_A 6 SGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI 85 (95)
T ss_dssp CCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEB
T ss_pred cEEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEE
Confidence 459999999766 699999999999999999999999999999999987 43 588999999999999999998
Q ss_pred e
Q 022980 126 E 126 (289)
Q Consensus 126 ~ 126 (289)
.
T Consensus 86 d 86 (95)
T 1v6e_A 86 D 86 (95)
T ss_dssp C
T ss_pred E
Confidence 5
No 73
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.49 E-value=8.7e-14 Score=112.66 Aligned_cols=74 Identities=23% Similarity=0.396 Sum_probs=68.5
Q ss_pred CcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEeeC
Q 022980 55 PVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL 128 (289)
Q Consensus 55 ~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~~ 128 (289)
.+++|+|+. .|..+.++|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|.+|||++|++|+|+...
T Consensus 8 ~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~ 82 (114)
T 2kdi_A 8 GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRL 82 (114)
T ss_dssp CCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECC
T ss_pred CcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence 357888885 67899999999999999999999999999999999999999999999999999999999999754
No 74
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.49 E-value=6.3e-14 Score=115.15 Aligned_cols=72 Identities=18% Similarity=0.173 Sum_probs=68.5
Q ss_pred cEEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCC-------CCEEEEEee
Q 022980 56 VIRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKD-------KSKVLLLEE 127 (289)
Q Consensus 56 ~I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKd-------gskL~Lv~~ 127 (289)
.+.|+|+++..++.+++.+.+||.+||++|+...|+||++|||||.|+.++|+.+|.+|||++ +++|+|+-.
T Consensus 2 ~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 2 DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp EEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred ceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 378999999889999999999999999999999999999999999999999999999999999 999999853
No 75
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.49 E-value=1.2e-13 Score=116.13 Aligned_cols=74 Identities=24% Similarity=0.230 Sum_probs=68.9
Q ss_pred CCcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 54 GPVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 54 ~~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
+..|.|+|++ .|+.+.++|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|.+|||++|++|+|+..
T Consensus 79 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~r 153 (159)
T 3rt3_B 79 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLR 153 (159)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEe
Confidence 3458899997 5789999999999999999999999999999999999999999999999999999999999864
No 76
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.47 E-value=1.5e-13 Score=118.56 Aligned_cols=71 Identities=25% Similarity=0.453 Sum_probs=66.7
Q ss_pred EEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 57 IRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 57 I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
|.|+|+. .|+.+.++|++++||++||++|++.+|+||++|||+|+|+.++|+.+|.+|||++|++|+|+..
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlr 72 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEE
Confidence 5788887 5688999999999999999999999999999999999999999999999999999999999964
No 77
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.47 E-value=1.9e-13 Score=108.31 Aligned_cols=74 Identities=8% Similarity=0.166 Sum_probs=65.9
Q ss_pred CCcEEEEEEeCC---eEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCe---e----cCCchhhhhcCCCCCCEEE
Q 022980 54 GPVIRINVARGP---SQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGK---E----KEDNEHLDVSGMKDKSKVL 123 (289)
Q Consensus 54 ~~~I~V~Vk~g~---~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK---~----ldd~~~L~~~GVKdgskL~ 123 (289)
...|+|.|++.. ..+++.|+++.||++||++|+..+|+||++|||+|.|+ . ++|+.+|.+|||++|++|+
T Consensus 12 ~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ih 91 (97)
T 2kj6_A 12 DDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLH 91 (97)
T ss_dssp CCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEE
T ss_pred CceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEE
Confidence 467999999843 36899999999999999999999999999999999984 2 4889999999999999999
Q ss_pred EEee
Q 022980 124 LLEE 127 (289)
Q Consensus 124 Lv~~ 127 (289)
|+..
T Consensus 92 lvd~ 95 (97)
T 2kj6_A 92 IIDL 95 (97)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9863
No 78
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.46 E-value=2.5e-13 Score=112.07 Aligned_cols=72 Identities=26% Similarity=0.455 Sum_probs=67.3
Q ss_pred EEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEeeC
Q 022980 57 IRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEEL 128 (289)
Q Consensus 57 I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~~ 128 (289)
|.|+|+. ++..+.+.|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|.+|||++|++|+|+...
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~ 73 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeec
Confidence 5788886 57889999999999999999999999999999999999999999999999999999999999754
No 79
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.45 E-value=1.9e-13 Score=114.89 Aligned_cols=71 Identities=23% Similarity=0.388 Sum_probs=67.5
Q ss_pred EEEEEE-eCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEE-E-cCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 57 IRINVA-RGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVL-F-RGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 57 I~V~Vk-~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLi-y-kGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
|.|+|+ ++|+.+.++|++++||++||++|++.+|+||++|+|+ | +|+.++|+.+|.+|||++|++|+|+..
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~ 76 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVD 76 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEEC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEcc
Confidence 789999 4788999999999999999999999999999999999 9 799999999999999999999999976
No 80
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.44 E-value=5.9e-13 Score=108.94 Aligned_cols=80 Identities=14% Similarity=0.188 Sum_probs=68.6
Q ss_pred CCCcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHH------HhCC--CCCCcEEEEcCeecCCchhhhhcCCCCC--CE
Q 022980 53 GGPVIRINVAR-GPSQYEVHVPARSTFGDLKKAISE------KTGL--DPQEQKVLFRGKEKEDNEHLDVSGMKDK--SK 121 (289)
Q Consensus 53 ~~~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e------~TGv--pp~~QKLiykGK~ldd~~~L~~~GVKdg--sk 121 (289)
+...|.|+|+. .|.+|+|+|.+.+||++||+.|++ ..|+ |+++|||||.||.|+|+.+|.+|+|+.+ ++
T Consensus 13 ~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~t 92 (116)
T 1wgh_A 13 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTV 92 (116)
T ss_dssp CSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEE
T ss_pred CCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceE
Confidence 45679999996 568999999999999999999999 6675 6999999999999999999999999877 56
Q ss_pred EEEEeeCCCCC
Q 022980 122 VLLLEELTNKE 132 (289)
Q Consensus 122 L~Lv~~~~s~e 132 (289)
|||+......+
T Consensus 93 lhLvlr~~~~~ 103 (116)
T 1wgh_A 93 MHLVARETLPE 103 (116)
T ss_dssp EEEEECSSCSS
T ss_pred EEEEccCCCCC
Confidence 78876554433
No 81
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.43 E-value=5.1e-13 Score=107.67 Aligned_cols=72 Identities=18% Similarity=0.213 Sum_probs=65.1
Q ss_pred cEEEEEEeC---CeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCC-CCCCEEEEEee
Q 022980 56 VIRINVARG---PSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGM-KDKSKVLLLEE 127 (289)
Q Consensus 56 ~I~V~Vk~g---~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GV-KdgskL~Lv~~ 127 (289)
.+.|+|+.- +..+.++|.+.+||++||++|++..|+||++|||+|.|+.++|+.+|.+||| ++|++|+|+--
T Consensus 24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 477777763 3688999999999999999999999999999999999999999999999999 59999999854
No 82
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.43 E-value=2.9e-13 Score=119.24 Aligned_cols=72 Identities=25% Similarity=0.389 Sum_probs=68.3
Q ss_pred cEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 56 VIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 56 ~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
.|.|+|+. .++.+.|+|++++||.+||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+..
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~Lvlr 177 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 177 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCC
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEE
Confidence 48999997 5788999999999999999999999999999999999999999999999999999999999864
No 83
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.43 E-value=3.4e-13 Score=111.65 Aligned_cols=81 Identities=14% Similarity=0.150 Sum_probs=69.9
Q ss_pred CCCCCCcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHH------HhCCC--CCCcEEEEcCeecCCchhhhhcCCCCCC
Q 022980 50 SVSGGPVIRINVAR-GPSQYEVHVPARSTFGDLKKAISE------KTGLD--PQEQKVLFRGKEKEDNEHLDVSGMKDKS 120 (289)
Q Consensus 50 ~~~~~~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e------~TGvp--p~~QKLiykGK~ldd~~~L~~~GVKdgs 120 (289)
+......|.|+|+. .|.+++++|++.+||++||+.|++ ..|+| +++|||||.||.++|+.+|++|||+.|+
T Consensus 11 ~~~~~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~ 90 (125)
T 2gow_A 11 SNVPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGK 90 (125)
T ss_dssp CSCCTTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTS
T ss_pred cCCCCCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCC
Confidence 44456679999996 568999999999999999999999 78884 8999999999999999999999999887
Q ss_pred --EEEEEeeCCC
Q 022980 121 --KVLLLEELTN 130 (289)
Q Consensus 121 --kL~Lv~~~~s 130 (289)
+|+|+.....
T Consensus 91 ~~tlhlv~r~~~ 102 (125)
T 2gow_A 91 TTVMHLVARETL 102 (125)
T ss_dssp EEEEEEEECSCC
T ss_pred ceEEEEEecCCC
Confidence 5777765443
No 84
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.42 E-value=1.3e-14 Score=119.49 Aligned_cols=71 Identities=25% Similarity=0.453 Sum_probs=0.0
Q ss_pred EEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 57 IRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 57 I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
|.|+|++ +|..+.|+|++++||++||++|++.+|+||++|+|+|+|+.++|+.+|.+|||++|++|+|+..
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~r 72 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (128)
T ss_dssp ------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEE
Confidence 5678886 5688999999999999999999999999999999999999999999999999999999999864
No 85
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.42 E-value=3.9e-13 Score=109.99 Aligned_cols=72 Identities=18% Similarity=0.333 Sum_probs=65.8
Q ss_pred CcEEEEEEeCCe--EEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcC---e---e-cCCchhhhhcCCCCCCEEEEE
Q 022980 55 PVIRINVARGPS--QYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRG---K---E-KEDNEHLDVSGMKDKSKVLLL 125 (289)
Q Consensus 55 ~~I~V~Vk~g~~--~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykG---K---~-ldd~~~L~~~GVKdgskL~Lv 125 (289)
..|+|+|++.+. .+++.|+++.||++||.+|+..+|+||.+|||+|.| + . ++|+.+|.+|||++|++|+|+
T Consensus 5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvv 84 (122)
T 1t0y_A 5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAV 84 (122)
T ss_dssp CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEE
T ss_pred CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEE
Confidence 479999999765 699999999999999999999999999999999988 4 2 478899999999999999999
Q ss_pred e
Q 022980 126 E 126 (289)
Q Consensus 126 ~ 126 (289)
.
T Consensus 85 d 85 (122)
T 1t0y_A 85 D 85 (122)
T ss_dssp E
T ss_pred e
Confidence 5
No 86
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.42 E-value=7.4e-13 Score=109.24 Aligned_cols=72 Identities=25% Similarity=0.421 Sum_probs=67.0
Q ss_pred cEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 56 VIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 56 ~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
.+.|+|+. .|..+.+.|++.+||++||++|+..+|+|+++|+|+|+|+.++|+.+|.+|||++|++|+|+..
T Consensus 76 ~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r 148 (152)
T 3b08_A 76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 148 (152)
T ss_dssp CEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred ccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEe
Confidence 47788885 5688999999999999999999999999999999999999999999999999999999999864
No 87
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.40 E-value=8.3e-13 Score=105.64 Aligned_cols=76 Identities=17% Similarity=0.123 Sum_probs=66.1
Q ss_pred CcEEEEEEeCCeEEEEEec-CCCcHHHHHHHHHHHhCCCCCCcEEEEcCe-----------e----cCCchhhhhcCCCC
Q 022980 55 PVIRINVARGPSQYEVHVP-ARSTFGDLKKAISEKTGLDPQEQKVLFRGK-----------E----KEDNEHLDVSGMKD 118 (289)
Q Consensus 55 ~~I~V~Vk~g~~~~~V~V~-a~sTvgdLK~~I~e~TGvpp~~QKLiykGK-----------~----ldd~~~L~~~GVKd 118 (289)
..|.|+|+....++.|+|+ +++||++||++|++.+|+|+++|+|+|.|+ . ++|+.+|.+|||++
T Consensus 6 ~~M~irvrs~~G~~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~ 85 (107)
T 1wf9_A 6 SGTMLRVRSRDGLERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAH 85 (107)
T ss_dssp CCEEEEEECSSCEEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCT
T ss_pred CeEEEEEECCCCCEEEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCC
Confidence 3488999975445689999 999999999999999999999999999988 4 58889999999999
Q ss_pred CCEEEEEeeCCC
Q 022980 119 KSKVLLLEELTN 130 (289)
Q Consensus 119 gskL~Lv~~~~s 130 (289)
|++|+|+.....
T Consensus 86 G~~L~l~~~~~~ 97 (107)
T 1wf9_A 86 GSMVYLAYEGER 97 (107)
T ss_dssp TCEEECCCSSCC
T ss_pred CCEEEEEeCCCC
Confidence 999999865443
No 88
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.39 E-value=1.1e-12 Score=112.11 Aligned_cols=71 Identities=25% Similarity=0.425 Sum_probs=65.8
Q ss_pred cEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 56 VIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 56 ~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
.+.|+|+. .++.+.+.|++.+||.+||++|+..+|+|+++|+|+|+|+.++|+.+|.+|||++|++|+|+.
T Consensus 96 g~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~ 167 (172)
T 3u30_A 96 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 167 (172)
T ss_dssp CEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC
T ss_pred cccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEE
Confidence 46677774 678899999999999999999999999999999999999999999999999999999999985
No 89
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.35 E-value=7.8e-14 Score=118.90 Aligned_cols=71 Identities=25% Similarity=0.453 Sum_probs=0.0
Q ss_pred EEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 57 IRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 57 I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
|.|+|++ +|..+.|+|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|.+|||++|++|+|+..
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlr 72 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (152)
T ss_dssp ------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEee
Confidence 5677886 5678999999999999999999999999999999999999999999999999999999999854
No 90
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.33 E-value=2.4e-12 Score=98.73 Aligned_cols=72 Identities=15% Similarity=0.248 Sum_probs=62.5
Q ss_pred EEEEEEeCCeEEEEE-ecCCCcHHHHHHHHHHHhCCCCCCcEEEEcC--eecC---CchhhhhcCCCCCCEEEEEeeC
Q 022980 57 IRINVARGPSQYEVH-VPARSTFGDLKKAISEKTGLDPQEQKVLFRG--KEKE---DNEHLDVSGMKDKSKVLLLEEL 128 (289)
Q Consensus 57 I~V~Vk~g~~~~~V~-V~a~sTvgdLK~~I~e~TGvpp~~QKLiykG--K~ld---d~~~L~~~GVKdgskL~Lv~~~ 128 (289)
|+|+|++.+..+.|. |++++||++||+.|++.+|+|+++|+|+|.+ |.++ ++.+|.+|||++|++|+|..+.
T Consensus 1 m~i~vr~~~G~~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~~ 78 (86)
T 2kzr_A 1 WRVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEEDQ 78 (86)
T ss_dssp CCEEEEETTEEEEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCCS
T ss_pred CEEEEEcCCCCEEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeCC
Confidence 568888855567788 9999999999999999999999999999974 6653 6889999999999999988653
No 91
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=3.4e-12 Score=99.05 Aligned_cols=71 Identities=13% Similarity=0.225 Sum_probs=62.2
Q ss_pred CCcEEEEEEeC--CeE-EEE-EecCCCcHHHHHHHHHHH-hCCCCCCcEEEEc--CeecCCchhhhhcCCCCCCEEEE
Q 022980 54 GPVIRINVARG--PSQ-YEV-HVPARSTFGDLKKAISEK-TGLDPQEQKVLFR--GKEKEDNEHLDVSGMKDKSKVLL 124 (289)
Q Consensus 54 ~~~I~V~Vk~g--~~~-~~V-~V~a~sTvgdLK~~I~e~-TGvpp~~QKLiyk--GK~ldd~~~L~~~GVKdgskL~L 124 (289)
..+|.|+|+.. +.. +.| +|++.+||++||+.|++. .|+||.+|+|+|. |+.++|+.+|.+|||++|++|++
T Consensus 8 ~~~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 8 MKHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CCCEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred eEEEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 44699999973 332 468 999999999999999995 8999999999975 99999999999999999999876
No 92
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.32 E-value=4.3e-12 Score=119.30 Aligned_cols=74 Identities=24% Similarity=0.386 Sum_probs=69.5
Q ss_pred CCCcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 53 GGPVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 53 ~~~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
....|+|+|++ .++.+.++|++++||++||++|++.+|+|+++|||+|+|+.++|+.+|.+|||++|++|+|+.
T Consensus 230 ~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~Lvl 304 (307)
T 3ai5_A 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 304 (307)
T ss_dssp SCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEE
Confidence 45679999998 578899999999999999999999999999999999999999999999999999999999985
No 93
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.31 E-value=8.5e-12 Score=103.53 Aligned_cols=76 Identities=17% Similarity=0.183 Sum_probs=64.1
Q ss_pred CCcEEEEEEe--CCeEEEEEecCCCcHHHHHHHH-----HHHhCCCC--CCcEEEEcCeecCCchhhhhcCCCCC-----
Q 022980 54 GPVIRINVAR--GPSQYEVHVPARSTFGDLKKAI-----SEKTGLDP--QEQKVLFRGKEKEDNEHLDVSGMKDK----- 119 (289)
Q Consensus 54 ~~~I~V~Vk~--g~~~~~V~V~a~sTvgdLK~~I-----~e~TGvpp--~~QKLiykGK~ldd~~~L~~~GVKdg----- 119 (289)
...|.|+|+. |....++.|++.+||.+||++| ++..|+|+ ++|||||.||.++|+.+|++|+|++|
T Consensus 14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~ 93 (126)
T 1se9_A 14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGA 93 (126)
T ss_dssp CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTC
T ss_pred cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCC
Confidence 4678888886 4344489999999999999999 55778987 89999999999999999999999999
Q ss_pred -CEEEEEeeCC
Q 022980 120 -SKVLLLEELT 129 (289)
Q Consensus 120 -skL~Lv~~~~ 129 (289)
++|+|+-...
T Consensus 94 v~tmhlVlrl~ 104 (126)
T 1se9_A 94 VTTMHVIIQAP 104 (126)
T ss_dssp CEEEEEEECCC
T ss_pred cEEEEEEeccC
Confidence 5678775443
No 94
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.28 E-value=3.6e-12 Score=122.44 Aligned_cols=71 Identities=17% Similarity=0.325 Sum_probs=65.5
Q ss_pred CcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHH---HhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEE
Q 022980 55 PVIRINVAR-GPSQYEVHVPARSTFGDLKKAISE---KTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLL 125 (289)
Q Consensus 55 ~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e---~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv 125 (289)
.+|+|+||+ .+++|.|+|++.+||++||++|+. .+|+|+++|||||+||.++|+.+|.+|||++|++|+++
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~l 80 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVM 80 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEE
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEE
Confidence 468999998 478999999999999999999999 68899999999999999999999999999999999444
No 95
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.14 E-value=1.7e-10 Score=90.24 Aligned_cols=74 Identities=14% Similarity=0.178 Sum_probs=64.8
Q ss_pred CCCcEEEEEEe----CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcC------ee-c-CCchhhhhcCCCCCC
Q 022980 53 GGPVIRINVAR----GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRG------KE-K-EDNEHLDVSGMKDKS 120 (289)
Q Consensus 53 ~~~~I~V~Vk~----g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykG------K~-l-dd~~~L~~~GVKdgs 120 (289)
....|+|+|++ .+..+++.||.+.||++||.+|+..||+|+..|+|+|.+ .. + +|..+|..|||.+|+
T Consensus 6 ~~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~ 85 (97)
T 1wjn_A 6 SGQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGD 85 (97)
T ss_dssp SSCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTC
T ss_pred cCccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCC
Confidence 45679998886 466889999999999999999999999999999999983 22 3 788999999999999
Q ss_pred EEEEEe
Q 022980 121 KVLLLE 126 (289)
Q Consensus 121 kL~Lv~ 126 (289)
+|++..
T Consensus 86 ~I~V~d 91 (97)
T 1wjn_A 86 CLLVRW 91 (97)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 999885
No 96
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.02 E-value=2.2e-09 Score=81.46 Aligned_cols=74 Identities=18% Similarity=0.262 Sum_probs=67.7
Q ss_pred CCCcEEEEEEe-CC-eEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 53 GGPVIRINVAR-GP-SQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 53 ~~~~I~V~Vk~-g~-~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
....|+|+|+. .+ ..+.+.|.+++++..|+...++..|+++.+|+|+|.|+.+.++.+..+|++.+|+.|.+++
T Consensus 4 ~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~ 79 (79)
T 3a4r_A 4 GSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVWG 79 (79)
T ss_dssp CCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEEC
T ss_pred CCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEeC
Confidence 44679999996 45 4788999999999999999999999999999999999999999999999999999998864
No 97
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=98.99 E-value=1.5e-09 Score=85.30 Aligned_cols=73 Identities=19% Similarity=0.324 Sum_probs=67.7
Q ss_pred CCcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 54 GPVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 54 ~~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
.+.|+|+|+. .+..+.+.|.+++++..|+..+++..|+++.+|||+|.|+.++++.++.+|++.+|+.|.++-
T Consensus 5 ~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~ 78 (94)
T 2io1_B 5 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 78 (94)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEE
Confidence 4679999996 567789999999999999999999999999999999999999999999999999999999885
No 98
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=98.98 E-value=5e-11 Score=105.06 Aligned_cols=65 Identities=17% Similarity=0.188 Sum_probs=0.0
Q ss_pred EEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 57 IRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 57 I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
|.|+|+. .+.++.|+|.+++||.+||.+|++.+||||++|+|||.|+.|+|+.+|+ ++|+|+|+.
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvl 66 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSL 66 (189)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEE
Confidence 5677775 4688999999999999999999999999999999999999999999998 999999884
No 99
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=98.94 E-value=3.5e-09 Score=78.71 Aligned_cols=69 Identities=20% Similarity=0.346 Sum_probs=64.7
Q ss_pred EEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEE
Q 022980 57 IRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLL 125 (289)
Q Consensus 57 I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv 125 (289)
|+|+|+. .|..+.+.|.+++++..|+...++..|+++..|+|+|.|+.+.++.+..+||+.+|+.|.++
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 7888985 56788999999999999999999999999999999999999999999999999999999875
No 100
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=98.93 E-value=3.2e-09 Score=83.02 Aligned_cols=75 Identities=19% Similarity=0.325 Sum_probs=68.1
Q ss_pred CCCcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 53 GGPVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 53 ~~~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
+.+.|+|+|+. .+..+.+.|.+++++..|+...++..|+++..|+|+|.|+.+.++.|..+|++.+|+.|.++..
T Consensus 2 ~~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~ 77 (91)
T 2io0_B 2 ANDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ 77 (91)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred CCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEe
Confidence 45679999996 5677899999999999999999999999999999999999999999999999999999998853
No 101
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=98.84 E-value=1.3e-08 Score=79.58 Aligned_cols=74 Identities=19% Similarity=0.322 Sum_probs=67.7
Q ss_pred CCCcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 53 GGPVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 53 ~~~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
....|+|+|+. .+..+.+.|.+++++..|+...++..|+++..|+|+|.|+.+.++.++.+|++.+|+.|.++.
T Consensus 14 ~~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~ 88 (93)
T 2d07_B 14 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 88 (93)
T ss_dssp -CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEe
Confidence 34679999996 566788999999999999999999999999999999999999999999999999999999875
No 102
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=98.81 E-value=1.9e-08 Score=81.01 Aligned_cols=74 Identities=15% Similarity=0.260 Sum_probs=68.4
Q ss_pred CCCcEEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 53 GGPVIRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 53 ~~~~I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
+...|+|+|+..+..+.+.|..+++|..|+...++..|+++..|||+|.|+.+.++.|..+|++.+|+.|.++.
T Consensus 28 ~~~~I~IkV~~~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~ 101 (106)
T 2eke_C 28 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 101 (106)
T ss_dssp CCSEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred CCCeEEEEEecCCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEe
Confidence 45679999998667788999999999999999999999999999999999999999999999999999998875
No 103
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.80 E-value=1.5e-08 Score=81.06 Aligned_cols=74 Identities=19% Similarity=0.322 Sum_probs=68.2
Q ss_pred CCCcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 53 GGPVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 53 ~~~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
....|+|+|+. .+..+.+.|.++++|..|+..+++..|+++..|||+|.|+.+.++.++.+|++.+|+.|.++-
T Consensus 21 ~~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~ 95 (104)
T 1wz0_A 21 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 95 (104)
T ss_dssp CSCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECC
T ss_pred CCCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEE
Confidence 34579999996 566788999999999999999999999999999999999999999999999999999999885
No 104
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=98.78 E-value=1.8e-08 Score=81.52 Aligned_cols=75 Identities=16% Similarity=0.333 Sum_probs=68.7
Q ss_pred CCCcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 53 GGPVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 53 ~~~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
+...|+|+|+. .+..+.+.|.++++|..|+...++..|+++..|+|+|.|+.+.++.|..+|++.+|+.|.++..
T Consensus 23 ~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~ 98 (110)
T 2k8h_A 23 ETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVE 98 (110)
T ss_dssp CCCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECC
T ss_pred CCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 44679999996 4567889999999999999999999999999999999999999999999999999999998853
No 105
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.48 E-value=9.2e-08 Score=72.87 Aligned_cols=69 Identities=16% Similarity=0.239 Sum_probs=57.8
Q ss_pred EEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCee-----cCCchhhhhcCCCCCCEEEEE
Q 022980 57 IRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKE-----KEDNEHLDVSGMKDKSKVLLL 125 (289)
Q Consensus 57 I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~-----ldd~~~L~~~GVKdgskL~Lv 125 (289)
|.|+|++....+.|+|++++||++|+..|++.+++++..|.|.+.-.. ...+.+|+++||++||.|+|.
T Consensus 5 m~lRvrs~~G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 5 IIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCEEECSSEEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred EEEEEECCCCCEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 778888866788899999999999999999999999988887554332 236789999999999999874
No 106
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.39 E-value=1.4e-06 Score=71.17 Aligned_cols=73 Identities=21% Similarity=0.394 Sum_probs=66.6
Q ss_pred CCcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 54 GPVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 54 ~~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
.+-|+|+|+. .+....+.|..++++.-|+...++..|+++..+|++|.|+.+.++.|..++++.||+.|-++.
T Consensus 38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~ 111 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQ 111 (115)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 4679999986 356678999999999999999999999999999999999999999999999999999998874
No 107
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.37 E-value=1.1e-06 Score=78.01 Aligned_cols=75 Identities=16% Similarity=0.273 Sum_probs=69.7
Q ss_pred CCCcEEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 53 GGPVIRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 53 ~~~~I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
+..-|+|+|+..+....+.|..++++..|+...+++.|+++.++|++|.|+.+.++.|..++|+.+||.|.++-.
T Consensus 26 ~~~~I~LkV~~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~ 100 (200)
T 3pge_A 26 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE 100 (200)
T ss_dssp CCCCEEEEEECSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred CCCeEEEEEecCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEec
Confidence 456799999877788899999999999999999999999999999999999999999999999999999988853
No 108
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.28 E-value=1.7e-06 Score=68.35 Aligned_cols=64 Identities=8% Similarity=0.177 Sum_probs=53.0
Q ss_pred eCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCee--cCCchhhhhcCCC-CCCEEEEEe
Q 022980 63 RGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKE--KEDNEHLDVSGMK-DKSKVLLLE 126 (289)
Q Consensus 63 ~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~--ldd~~~L~~~GVK-dgskL~Lv~ 126 (289)
..+..|.|.|.++.|+..||++|++.|||||.+|+|||.|+. ++.+.+-..|--. ..+-|+|+.
T Consensus 21 ~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s 87 (94)
T 4efo_A 21 QQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVS 87 (94)
T ss_dssp TTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEE
T ss_pred ccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEe
Confidence 367889999999999999999999999999999999999987 6766666666443 345577774
No 109
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.24 E-value=2.2e-06 Score=75.86 Aligned_cols=75 Identities=17% Similarity=0.275 Sum_probs=69.0
Q ss_pred CCCcEEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 53 GGPVIRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 53 ~~~~I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
+..-|+|+|+..+..+.+.|-.++++.-|+...++..|+++..++++|.|+.+.++.|..++++.|||.|.++..
T Consensus 54 p~e~InLKVk~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~le 128 (207)
T 3tix_A 54 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHRE 128 (207)
T ss_dssp -CCEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCC
T ss_pred CCCcEEEEEecCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEe
Confidence 345799999877788899999999999999999999999999999999999999999999999999999998853
No 110
>2d9d_A BAG family molecular chaperone regulator 5; triple helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=9.3e-06 Score=62.43 Aligned_cols=69 Identities=22% Similarity=0.211 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhhhHHHHHHHHHhhcCCCCch--hHHHHHHHHHHHHHHHHHHHH
Q 022980 160 QAIAGVRAEVDKLSERVASLEVAVNGGTKVPSEELDTSAELLMKELLKLDGIEAEG--EAKVQRKTEVRRVQKFHETLD 236 (289)
Q Consensus 160 ~aI~~i~~evd~La~~v~~~e~~~~~g~k~~eke~~~LsE~LM~~LLKLD~Ie~eG--daR~~RK~~VkrVQ~~Le~LD 236 (289)
..|..|+.++-.|.+++..+ .+ +.+.|..+.|.|-+.++.||.|+++| .+|.+||.+|++||.++.-||
T Consensus 10 ~~Ie~v~~r~r~l~~ell~~------~~--~s~~yl~~k~eLq~Li~~LDev~~~~NpcIReaRRrAV~EvQ~lit~lD 80 (89)
T 2d9d_A 10 LKIEKVLKRMREIKNELLQA------QN--PSELYLSSKTELQGLIGQLDEVSLEKNPCIREARRRAVIEVQTLITYID 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------SC--TTTHHHHHHHHHHHHHHHHGGGCSCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh------cC--chHHHhhhHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777777777664 22 27889999999999999999999999 899999999999999999999
No 111
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=97.93 E-value=6.9e-05 Score=59.24 Aligned_cols=74 Identities=18% Similarity=0.235 Sum_probs=65.9
Q ss_pred CCCcEEEEEEe-CC-eEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 53 GGPVIRINVAR-GP-SQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 53 ~~~~I~V~Vk~-g~-~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
....|+|+|+. .+ +...+.|..++++.-|....++..|+++...+++|.|..+..+.|..++++.||+.|-+++
T Consensus 22 ~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~~ 97 (97)
T 2jxx_A 22 TSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVWG 97 (97)
T ss_dssp SCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEEC
T ss_pred CCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEeC
Confidence 44679999986 34 4678999999999999999999999999999999999999999999999999999997753
No 112
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=97.84 E-value=2.2e-06 Score=76.79 Aligned_cols=74 Identities=15% Similarity=0.260 Sum_probs=0.0
Q ss_pred CCCcEEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 53 GGPVIRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 53 ~~~~I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
+..-|+|+|...+....+.|..++++.-|++..++..|+++..+|++|.|+.+.++.|..++|+.|||.|-++-
T Consensus 18 p~e~InLKV~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~l 91 (227)
T 3v7o_A 18 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 91 (227)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CCCeEEEEEeCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEe
Confidence 45678888865667788999999999999999999999999999999999999999999999999999998874
No 113
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=97.80 E-value=0.00016 Score=55.37 Aligned_cols=71 Identities=15% Similarity=0.305 Sum_probs=63.8
Q ss_pred CcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCC-CcEEEEcCeecCCchhhhhcCCCCCCEEEEE
Q 022980 55 PVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQ-EQKVLFRGKEKEDNEHLDVSGMKDKSKVLLL 125 (289)
Q Consensus 55 ~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~-~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv 125 (289)
..|++.+.. .+.-+.+.|+.+++|.+|-+.-+.+-||++. ..+|+|-|..++.+.++.+|++.||+.|=+|
T Consensus 8 ~~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvm 80 (82)
T 3goe_A 8 KLITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVV 80 (82)
T ss_dssp CEEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEE
T ss_pred HHHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeee
Confidence 457777775 3455889999999999999999999999999 9999999999999999999999999999766
No 114
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.74 E-value=0.00011 Score=57.40 Aligned_cols=73 Identities=10% Similarity=0.169 Sum_probs=66.0
Q ss_pred EEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEeeCC
Q 022980 57 IRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEELT 129 (289)
Q Consensus 57 I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~~~ 129 (289)
+.|+|-+ ++.++.|.|.+..|+-++-+..++.+|+.+++-.|.|++|.+|-+.+++-.||-+|++|-|+....
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s~ 83 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVSR 83 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSSS
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEccC
Confidence 4666665 678999999999999999999999999999999999999999999999999999999999986443
No 115
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.68 E-value=0.00012 Score=64.62 Aligned_cols=78 Identities=17% Similarity=0.278 Sum_probs=69.1
Q ss_pred CCCCCCcEEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 50 SVSGGPVIRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 50 ~~~~~~~I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
...+...|.|+|+..+..+.+.|..++++.-|+...|+..|+++.+++++|.|+.+.++.+-.++.+.|++.|-+...
T Consensus 15 ~~~~~~~i~ikv~~~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~e 92 (209)
T 3uf8_A 15 EVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE 92 (209)
T ss_dssp ---CCSEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECS
T ss_pred eeCCCCcEEEEEEcCCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhcc
Confidence 334567799999986677789999999999999999999999999999999999999999999999999999988753
No 116
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.64 E-value=0.00045 Score=54.51 Aligned_cols=73 Identities=7% Similarity=0.093 Sum_probs=67.2
Q ss_pred CCcEEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 54 GPVIRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 54 ~~~I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
...|.|+|+.++....+.|-.++.+.-|....|.+.|+++...+++|.|....++.|-.++|+.+|+.|=++-
T Consensus 19 ~~~IniKV~~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 19 PRLFPLKIRCRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp CCCEEEEEECSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEE
T ss_pred CCeEEEEEEcCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEE
Confidence 4459999998888888999999999999999999999999999999999999999999999999999997764
No 117
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.63 E-value=8.8e-05 Score=56.91 Aligned_cols=69 Identities=10% Similarity=0.143 Sum_probs=60.2
Q ss_pred cEEEEEE---eCCeEEEEEecCCCcHHHHHHHHHHHhCCCCC-----CcEEEEcCeecCCchhhhhcCCCCCCEEEE
Q 022980 56 VIRINVA---RGPSQYEVHVPARSTFGDLKKAISEKTGLDPQ-----EQKVLFRGKEKEDNEHLDVSGMKDKSKVLL 124 (289)
Q Consensus 56 ~I~V~Vk---~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~-----~QKLiykGK~ldd~~~L~~~GVKdgskL~L 124 (289)
-|.|++- |.++.|++.||.+-|+..|.+.|.+..+++.. ..|+..||..+.+...|.+|||.+||.|-+
T Consensus 4 yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 4 YIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 3666666 47899999999999999999999999999752 467788899999999999999999999865
No 118
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.45 E-value=1.8e-05 Score=75.75 Aligned_cols=75 Identities=16% Similarity=0.273 Sum_probs=0.0
Q ss_pred CCCcEEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 53 GGPVIRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 53 ~~~~I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
+.+.|+|+|+..+....+.|..++++.-|+...++..|+++..++++|.|+.+.++.|..++|+.|||.|-++..
T Consensus 18 ~~~~I~LKV~~~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~ 92 (360)
T 3ix6_A 18 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE 92 (360)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred CCCeEEEEEecCCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhc
Confidence 456799999887777889999999999999999999999999999999999999999999999999999988753
No 119
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.17 E-value=5.8e-05 Score=71.93 Aligned_cols=74 Identities=15% Similarity=0.258 Sum_probs=0.0
Q ss_pred CCCcEEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 53 GGPVIRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 53 ~~~~I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
+...|+|+|+..+....+.|..++++.-|+...+++.|+++..++++|.|+.+.++.|-.++|+.+|+.|-++.
T Consensus 27 ~~~~i~lkv~~~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~ 100 (389)
T 4da1_A 27 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHR 100 (389)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CCCcEEEEEecCCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeee
Confidence 34568899988667778999999999999999999999999999999999999999999999999999998774
No 120
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=97.01 E-value=0.006 Score=49.81 Aligned_cols=95 Identities=17% Similarity=0.230 Sum_probs=69.2
Q ss_pred CCCccceeeCCCceeeeecCCCCCCCCCCCCCCCCCCcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcE
Q 022980 19 NEQVDWEMRPGGMLVQRRDDDNYDHQDGAAASVSGGPVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQK 97 (289)
Q Consensus 19 ~~~~~we~rpggmlvq~r~~~~~~~~~~~~~~~~~~~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QK 97 (289)
.+..+|+.+||--.-.. .+-....+..+|.|+. .|.++.-.++..+||.+|...|... |.++..-.
T Consensus 18 ~~~~~~~~~~~~~~~~~------------~~~d~~~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~ 84 (124)
T 1wj4_A 18 VDSEILEMPPEKADGVV------------EGIDVNGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFE 84 (124)
T ss_dssp CCCCSCSCCCCCCCCCC------------CCCCCSSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEE
T ss_pred cChhhhhcCCCCCCCcc------------cccCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeE
Confidence 45678998776332110 1111245678888886 5678889999999999999999887 77777777
Q ss_pred EE--EcCeec---CCchhhhhcCCCCCCEEEEEe
Q 022980 98 VL--FRGKEK---EDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 98 Li--ykGK~l---dd~~~L~~~GVKdgskL~Lv~ 126 (289)
|+ |-.|.+ |.+.+|.++|+.+...|+|..
T Consensus 85 L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 85 LLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp EECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred EecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 76 456765 457899999999988887754
No 121
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=96.98 E-value=0.0011 Score=54.85 Aligned_cols=67 Identities=16% Similarity=0.242 Sum_probs=54.1
Q ss_pred EEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCC-------------------------------------CcEEEE
Q 022980 59 INVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQ-------------------------------------EQKVLF 100 (289)
Q Consensus 59 V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~-------------------------------------~QKLiy 100 (289)
|+|+- ++..+++.|+...||++++..||...||+.. .|||-.
T Consensus 14 LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~~ 93 (128)
T 2kc2_A 14 LKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLHT 93 (128)
T ss_dssp EEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCCC
T ss_pred EEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhcc
Confidence 44443 5688999999999999999999999999854 455532
Q ss_pred --cCeecCCchhhhhcCCCCCCEEEEE
Q 022980 101 --RGKEKEDNEHLDVSGMKDKSKVLLL 125 (289)
Q Consensus 101 --kGK~ldd~~~L~~~GVKdgskL~Lv 125 (289)
.+..+|++.+|.++||.++++|+|-
T Consensus 94 dd~~~WLD~srtL~EQGI~e~~tllLR 120 (128)
T 2kc2_A 94 DDELNWLDHGRTLREQGVEEHETLLLR 120 (128)
T ss_dssp SSSEEEECSSSCHHHHTCCTTSEEEEE
T ss_pred cCCCCcccCCCcHHHcCCCCCCEEEEE
Confidence 2355899999999999999998774
No 122
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=96.66 E-value=0.0093 Score=44.92 Aligned_cols=73 Identities=16% Similarity=0.198 Sum_probs=58.1
Q ss_pred CCCcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEE--EcCeec---CCchhhhhcCCCCCCEEEEEe
Q 022980 53 GGPVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVL--FRGKEK---EDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 53 ~~~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLi--ykGK~l---dd~~~L~~~GVKdgskL~Lv~ 126 (289)
..+..+|.|+. +|.+..-.++.++|+.+|...|.. .|.++...+|+ |-.|.+ |.+.+|.++|+.+++.|++-+
T Consensus 4 ~~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 4 MEPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp CCCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 34667777776 456788899999999999999988 67788888887 446665 567899999999988887643
No 123
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=95.98 E-value=0.018 Score=44.25 Aligned_cols=48 Identities=13% Similarity=0.211 Sum_probs=44.1
Q ss_pred CcEEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCe
Q 022980 55 PVIRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGK 103 (289)
Q Consensus 55 ~~I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK 103 (289)
..++|+|.+. .++.|.||...++.+|+.+|+++.+++++..+|-|+-.
T Consensus 4 ~~~~VKV~~~-~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 4 MAYTLKVHYK-YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR 51 (83)
T ss_dssp SCEEEEEESS-SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred CcEEEEEEEE-EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence 4489999888 78999999999999999999999999999999999964
No 124
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=95.98 E-value=0.046 Score=43.41 Aligned_cols=75 Identities=15% Similarity=0.217 Sum_probs=59.2
Q ss_pred CCCCcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEE--EcCeec---CCchhhhhcCCCCCCEEEEE
Q 022980 52 SGGPVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVL--FRGKEK---EDNEHLDVSGMKDKSKVLLL 125 (289)
Q Consensus 52 ~~~~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLi--ykGK~l---dd~~~L~~~GVKdgskL~Lv 125 (289)
...+..+|.|+. .|.+..-.++.++||.+|+.-|....+.+...-.|+ |--|.+ |.+.+|.++|+.+...|++.
T Consensus 9 ~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~ 88 (109)
T 2dzk_A 9 DRSTIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLL 88 (109)
T ss_dssp CCSCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEE
Confidence 345567777775 467889999999999999999999988877777776 445554 35789999999999877766
Q ss_pred e
Q 022980 126 E 126 (289)
Q Consensus 126 ~ 126 (289)
.
T Consensus 89 ~ 89 (109)
T 2dzk_A 89 P 89 (109)
T ss_dssp C
T ss_pred E
Confidence 4
No 125
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=95.51 E-value=0.13 Score=40.62 Aligned_cols=72 Identities=11% Similarity=0.062 Sum_probs=56.2
Q ss_pred CCcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEE--EcCeec--CCchhhhhcCCCCCCEEEEEe
Q 022980 54 GPVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVL--FRGKEK--EDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 54 ~~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLi--ykGK~l--dd~~~L~~~GVKdgskL~Lv~ 126 (289)
.+.++|.|+. .|.++.-.++.++||.+|..-|... +..+..-+|+ |-.|.+ +.+.+|.++||.+...|+|-.
T Consensus 21 ~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 21 EEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp SSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 5678888886 5677888999999999999999965 5556666776 445664 467899999999988877653
No 126
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.40 E-value=0.05 Score=42.16 Aligned_cols=73 Identities=18% Similarity=0.298 Sum_probs=61.1
Q ss_pred CCCCCCcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEc---CeecCCchhhhhcCCCCCCEEEEE
Q 022980 50 SVSGGPVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFR---GKEKEDNEHLDVSGMKDKSKVLLL 125 (289)
Q Consensus 50 ~~~~~~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiyk---GK~ldd~~~L~~~GVKdgskL~Lv 125 (289)
+.++..++++.|-+ ..+++-+.|.+..++++|--.|+++..+.|+.--|+-. +-.+|-+.+|.+|||+. |+.+
T Consensus 4 ~~~PE~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE---Lya~ 80 (91)
T 2daj_A 4 GSSGEKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE---LYAM 80 (91)
T ss_dssp CSCCCSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE---EEEE
T ss_pred CCCCccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh---hhee
Confidence 34577899999998 46778899999999999999999999999998877643 23389999999999997 5555
No 127
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=94.67 E-value=0.2 Score=44.04 Aligned_cols=59 Identities=8% Similarity=0.184 Sum_probs=48.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhCCCCC-CcEEE--E-cCee--cCC-chhhhhcCCCCCCEEEEE
Q 022980 67 QYEVHVPARSTFGDLKKAISEKTGLDPQ-EQKVL--F-RGKE--KED-NEHLDVSGMKDKSKVLLL 125 (289)
Q Consensus 67 ~~~V~V~a~sTvgdLK~~I~e~TGvpp~-~QKLi--y-kGK~--ldd-~~~L~~~GVKdgskL~Lv 125 (289)
.+.+.+...+||.+|++.++..++|+++ ..||- | .++. +++ +.+|.+++|.+|..|+|=
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE 206 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIE 206 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEE
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEE
Confidence 3668889999999999999999999997 68874 3 3443 555 579999999999998753
No 128
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=93.87 E-value=0.49 Score=34.20 Aligned_cols=61 Identities=13% Similarity=0.131 Sum_probs=48.1
Q ss_pred EEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 57 IRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 57 I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
|+|+|-.......++++...|+.+|.+.+ ++++....+.++|.....+. -|++||+|-++.
T Consensus 5 m~i~vNg~~~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~ 65 (70)
T 1ryj_A 5 MKFTVITDDGKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIR 65 (70)
T ss_dssp EEEEEEETTEEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEE
T ss_pred EEEEEeCccCceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEe
Confidence 77777766566778899889999998876 67887777888999854443 479999998874
No 129
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=93.74 E-value=0.32 Score=43.21 Aligned_cols=58 Identities=9% Similarity=0.171 Sum_probs=47.2
Q ss_pred EEEEecCCCcHHHHHHHHHHHhCCCCC-CcEEEE-c--Cee--cC-CchhhhhcCCCCCCEEEEE
Q 022980 68 YEVHVPARSTFGDLKKAISEKTGLDPQ-EQKVLF-R--GKE--KE-DNEHLDVSGMKDKSKVLLL 125 (289)
Q Consensus 68 ~~V~V~a~sTvgdLK~~I~e~TGvpp~-~QKLiy-k--GK~--ld-d~~~L~~~GVKdgskL~Lv 125 (289)
+.+.+...+||.+|++.++..++|+++ ..||-. . ++. ++ .+.+|.+++|.+|..|+|=
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE 218 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIE 218 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEE
Confidence 567789999999999999999999997 688854 2 222 55 4689999999999998753
No 130
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=93.53 E-value=0.34 Score=37.47 Aligned_cols=50 Identities=12% Similarity=0.184 Sum_probs=43.5
Q ss_pred CCCcEEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCC-cEEEEcC
Q 022980 53 GGPVIRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQE-QKVLFRG 102 (289)
Q Consensus 53 ~~~~I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~-QKLiykG 102 (289)
++..|+|++.++|...-+.+|+..++.+|.++|.+.+++++.+ ..|-|+.
T Consensus 3 ~~~~vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~D 53 (89)
T 1vd2_A 3 LGSQVRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWID 53 (89)
T ss_dssp CSSCEEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECC
T ss_pred CCCeEEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEEC
Confidence 4567999999999999999999999999999999999998654 5667774
No 131
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=93.28 E-value=0.34 Score=37.26 Aligned_cols=68 Identities=13% Similarity=0.181 Sum_probs=50.7
Q ss_pred CcEEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEE-EcC----eecCCchhhhhcCCCCCCEEEEE
Q 022980 55 PVIRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVL-FRG----KEKEDNEHLDVSGMKDKSKVLLL 125 (289)
Q Consensus 55 ~~I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLi-ykG----K~ldd~~~L~~~GVKdgskL~Lv 125 (289)
..|+|.|-|.+..+-|-||++-++.+|+..|..+..+. .+.|+ |++ .++.+++.|+. -|..++||+|.
T Consensus 11 ~~~KVK~yy~DDIiAIrvP~di~~~~L~dKi~~RLk~~--~~~l~~ykde~~g~~i~sD~dl~~-aiqrn~KL~l~ 83 (85)
T 1ip9_A 11 KTTKIKFYYKDDIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQTKLFDGSGEEIKTDSQVSN-IIQAKLKISVH 83 (85)
T ss_dssp CCEEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEEECCSSSCCSCCCSHHHHHH-HHHTTCCEEEE
T ss_pred CceEEEEEecCcEEEEECCCCCCHHHHHHHHHHHhccc--ceEEEEecCCCCCCcccCHHHHHH-HHHhcCeeEEe
Confidence 45899999988999999999999999999999999994 44554 443 23444444433 36677777765
No 132
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=92.86 E-value=0.26 Score=36.44 Aligned_cols=60 Identities=27% Similarity=0.449 Sum_probs=44.3
Q ss_pred EEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 57 IRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 57 I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
|+|+|+- |.....+++|..+|+.||- ...|++++.--++.+|+....+. +.+||+|-++.
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL----~~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~ 61 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLV----RAVDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLR 61 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHH----HTTCCCSSCCCEECCCCCCCTTS------SSCCCCEEECS
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHH----HHcCCCcceEEEEECCEECCHHH------CCCCCEEEEEE
Confidence 3556663 5455678999999999985 45899999887788888854333 34599998874
No 133
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=92.81 E-value=0.99 Score=34.46 Aligned_cols=66 Identities=17% Similarity=0.303 Sum_probs=47.7
Q ss_pred cEEEEEEe--------CCeEEEEEecCCCcHHHHHHHHHHHhC-C----------CCCCcEEEEcCeecCCchhhhhcCC
Q 022980 56 VIRINVAR--------GPSQYEVHVPARSTFGDLKKAISEKTG-L----------DPQEQKVLFRGKEKEDNEHLDVSGM 116 (289)
Q Consensus 56 ~I~V~Vk~--------g~~~~~V~V~a~sTvgdLK~~I~e~TG-v----------pp~~QKLiykGK~ldd~~~L~~~GV 116 (289)
.++|+|++ |.....++++...||++|.+.|..... + ......+..+|+..+. +.-|
T Consensus 9 ~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L 83 (98)
T 1vjk_A 9 SVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEEL 83 (98)
T ss_dssp CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBC
T ss_pred cEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCC
Confidence 48888887 545678889888999999999987631 1 1233456677877543 4558
Q ss_pred CCCCEEEEEe
Q 022980 117 KDKSKVLLLE 126 (289)
Q Consensus 117 KdgskL~Lv~ 126 (289)
++||+|.++.
T Consensus 84 ~dGDeV~i~p 93 (98)
T 1vjk_A 84 KDGDVVGVFP 93 (98)
T ss_dssp CTTCEEEEES
T ss_pred CCCCEEEEEC
Confidence 9999998874
No 134
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=92.81 E-value=0.42 Score=44.62 Aligned_cols=69 Identities=13% Similarity=0.186 Sum_probs=56.0
Q ss_pred EEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhC----CCCCCcEEEE------cCeecCCchhhhhcCCCCCCEEEEE
Q 022980 57 IRINVARGPSQYEVHVPARSTFGDLKKAISEKTG----LDPQEQKVLF------RGKEKEDNEHLDVSGMKDKSKVLLL 125 (289)
Q Consensus 57 I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TG----vpp~~QKLiy------kGK~ldd~~~L~~~GVKdgskL~Lv 125 (289)
+.++|...+.+..+.+++++||+|+...|.+... .++++--|.- +|+.+++..+|..||+++|+.|..-
T Consensus 4 ~~~~~~~~~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~ 82 (371)
T 3ivf_A 4 LSLKISIGNVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYR 82 (371)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEEecceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeecc
Confidence 5555555688899999999999999999988764 3566677776 5677888889999999999987654
No 135
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=90.93 E-value=0.52 Score=38.22 Aligned_cols=68 Identities=15% Similarity=0.261 Sum_probs=49.4
Q ss_pred CcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHH-hCCCCCCcEEE--EcCeec-CCchhhhhcCCCCCCEE
Q 022980 55 PVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEK-TGLDPQEQKVL--FRGKEK-EDNEHLDVSGMKDKSKV 122 (289)
Q Consensus 55 ~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~-TGvpp~~QKLi--ykGK~l-dd~~~L~~~GVKdgskL 122 (289)
+..+|.|+. +|.+..-.++.++||++|+.-|... .+.......|+ |-.|.+ +++.+|.++|+.+...|
T Consensus 51 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 51 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp CCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 344555554 4567888999999999999999986 34555666776 446665 45789999999985443
No 136
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=90.43 E-value=2.2 Score=31.61 Aligned_cols=58 Identities=21% Similarity=0.255 Sum_probs=41.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHHhC-CCC----------CCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 64 GPSQYEVHVPARSTFGDLKKAISEKTG-LDP----------QEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 64 g~~~~~V~V~a~sTvgdLK~~I~e~TG-vpp----------~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
|.....+++|...|+++|.+.|..... +.. ....+..+|+.... +.-|++||.|.++-
T Consensus 16 g~~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~P 84 (89)
T 3po0_A 16 GSRTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFP 84 (89)
T ss_dssp TCSEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEEC
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEEC
Confidence 545678899888999999999987642 110 12456678887543 34589999999874
No 137
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=88.95 E-value=0.78 Score=42.32 Aligned_cols=69 Identities=7% Similarity=0.129 Sum_probs=53.7
Q ss_pred EEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcC-ee-cCCchhhhhcCCCCC-CEEEEEe
Q 022980 58 RINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRG-KE-KEDNEHLDVSGMKDK-SKVLLLE 126 (289)
Q Consensus 58 ~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykG-K~-ldd~~~L~~~GVKdg-skL~Lv~ 126 (289)
.+........+.+.+.+..|+.+|++.++..||++++.|.|+|.+ .. ++...+.+.|.-... +-|+|+.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (396)
T 4eut_A 314 HVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVS 385 (396)
T ss_dssp EEEETTTTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSCCCCSSSCEEEEE
T ss_pred EEEEeccceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCCCCCCCCCeEEEe
Confidence 344444667788999999999999999999999999999999998 44 677777777665333 4466664
No 138
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=87.75 E-value=4.1 Score=31.00 Aligned_cols=67 Identities=15% Similarity=0.104 Sum_probs=41.9
Q ss_pred EEEEEEe--------C-CeEEEEEec--CCCcHHHHHHHHHHHhC-CCCCC------------cEEEEcCeecCCchhh-
Q 022980 57 IRINVAR--------G-PSQYEVHVP--ARSTFGDLKKAISEKTG-LDPQE------------QKVLFRGKEKEDNEHL- 111 (289)
Q Consensus 57 I~V~Vk~--------g-~~~~~V~V~--a~sTvgdLK~~I~e~TG-vpp~~------------QKLiykGK~ldd~~~L- 111 (289)
|+|+|++ + ...+.+++| ...|+++|.+.|.+... ..++- ..++.+|... ..+
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~---~~~~ 78 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDW---ELEG 78 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEG---GGGT
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEc---cccC
Confidence 6677776 2 356778888 67899999999988763 21111 1133344421 112
Q ss_pred -hhcCCCCCCEEEEEe
Q 022980 112 -DVSGMKDKSKVLLLE 126 (289)
Q Consensus 112 -~~~GVKdgskL~Lv~ 126 (289)
.++-|++||.|.++-
T Consensus 79 ~~d~~L~dgDeVa~~P 94 (99)
T 2qjl_A 79 EKDYILEDGDIISFTS 94 (99)
T ss_dssp GGGCBCCTTCEEEEEE
T ss_pred CCCcCcCCCCEEEEEC
Confidence 244689999998874
No 139
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=86.08 E-value=1.4 Score=34.69 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=38.3
Q ss_pred cEEEEEEeC--------CeEEEEEecCCCcHHHHHHHHHHHhCCCCC-----CcEEEEcC
Q 022980 56 VIRINVARG--------PSQYEVHVPARSTFGDLKKAISEKTGLDPQ-----EQKVLFRG 102 (289)
Q Consensus 56 ~I~V~Vk~g--------~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~-----~QKLiykG 102 (289)
.|+|+|.|+ +..+.|-||+..+|.+|..+|..+.+++.. ..||-|+.
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkD 64 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 64 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEEC
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEc
Confidence 489999988 667899999999999999999999997522 24666664
No 140
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=85.94 E-value=0.77 Score=37.55 Aligned_cols=33 Identities=12% Similarity=0.247 Sum_probs=29.7
Q ss_pred EEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEE
Q 022980 68 YEVHVPARSTFGDLKKAISEKTGLDPQEQKVLF 100 (289)
Q Consensus 68 ~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiy 100 (289)
..+.|..++||.+|+..|+..+|+|+++|||-+
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 357888999999999999999999999999853
No 141
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=84.93 E-value=2 Score=31.07 Aligned_cols=57 Identities=14% Similarity=0.151 Sum_probs=37.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHHhC-----CCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 64 GPSQYEVHVPARSTFGDLKKAISEKTG-----LDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 64 g~~~~~V~V~a~sTvgdLK~~I~e~TG-----vpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
|.....++ +...|+++|.+.|..... ++.....+..+|+.... +.-|++||+|.++-
T Consensus 15 g~~~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~P 76 (81)
T 1fm0_D 15 GTDATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFP 76 (81)
T ss_dssp TCSEEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEEC
T ss_pred CCCeEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeC
Confidence 43445566 667799999999874421 22333457778887543 34579999999874
No 142
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=84.33 E-value=6.4 Score=31.51 Aligned_cols=73 Identities=21% Similarity=0.288 Sum_probs=49.1
Q ss_pred CCcEEEEEEe---CCeEEEEEecCCCcHHHHHHHHHHH--hCCC------CCCcEEEEc-C---eecCCc----------
Q 022980 54 GPVIRINVAR---GPSQYEVHVPARSTFGDLKKAISEK--TGLD------PQEQKVLFR-G---KEKEDN---------- 108 (289)
Q Consensus 54 ~~~I~V~Vk~---g~~~~~V~V~a~sTvgdLK~~I~e~--TGvp------p~~QKLiyk-G---K~ldd~---------- 108 (289)
..+++|.|.. ++..+++.|-..+||.++|++|-+. -|+| ++..-|=++ | +.+.|.
T Consensus 9 ~~~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~w 88 (111)
T 4e71_A 9 YAPLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRW 88 (111)
T ss_dssp CCEEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---C
T ss_pred eEEEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcc
Confidence 3457777764 3456888888999999999998764 3444 345666664 3 222221
Q ss_pred ---hhhhhcCCCCCCEEEEEe
Q 022980 109 ---EHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 109 ---~~L~~~GVKdgskL~Lv~ 126 (289)
.+|..|+|.||++|-|+.
T Consensus 89 krLNTL~HY~V~dgatl~l~~ 109 (111)
T 4e71_A 89 KRVNTLMHYNVRDGATLILSK 109 (111)
T ss_dssp CCCCBHHHHTCCTTCEEEEEE
T ss_pred eEecchhhcCCCCCCEEEEEe
Confidence 369999999999998863
No 143
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=84.26 E-value=2.4 Score=32.30 Aligned_cols=61 Identities=13% Similarity=0.054 Sum_probs=43.0
Q ss_pred EEEEeCCeEEEEEecCC-CcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 59 INVARGPSQYEVHVPAR-STFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 59 V~Vk~g~~~~~V~V~a~-sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
++|.-+++. ++++.. .|+.+|.+.| ++++....+..+|..... ....+.-|++||+|-++.
T Consensus 21 M~I~vNGe~--~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~-~~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 21 HMLQLNGKD--VKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGK-ERYHEVELCDRDVIEIVH 82 (87)
T ss_dssp -CEEETTEE--ECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECG-GGTTTSBCCSSSEEEEEE
T ss_pred eEEEECCEE--EECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECCh-hhcCCcCCCCCCEEEEEc
Confidence 344446654 556776 8999998875 788887778889988443 223445689999998874
No 144
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=84.07 E-value=4.4 Score=32.21 Aligned_cols=67 Identities=16% Similarity=0.222 Sum_probs=43.1
Q ss_pred CcEEEEEEe--------CC-eEEEEEecC---CCcHHHHHHHHHHHhCCCCCCcEE-------------EEcCeecCCch
Q 022980 55 PVIRINVAR--------GP-SQYEVHVPA---RSTFGDLKKAISEKTGLDPQEQKV-------------LFRGKEKEDNE 109 (289)
Q Consensus 55 ~~I~V~Vk~--------g~-~~~~V~V~a---~sTvgdLK~~I~e~TGvpp~~QKL-------------iykGK~ldd~~ 109 (289)
++|+|+|+. ++ ..+.|+++. ..||++|-..|++.. |..+.+| +.+|. |-.
T Consensus 10 ~~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlVN~~---di~ 84 (114)
T 1wgk_A 10 APLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL--LKERPELFIQGDSVRPGILVLINDA---DWE 84 (114)
T ss_dssp CCEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT--CCSCHHHHCCSSSCCSSEEEEESSS---BHH
T ss_pred CCcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc--cchhHhhCccCCcccCCeEEEECCe---eee
Confidence 558888886 44 368899994 369999999988765 1112222 22332 222
Q ss_pred hhh--hcCCCCCCEEEEEe
Q 022980 110 HLD--VSGMKDKSKVLLLE 126 (289)
Q Consensus 110 ~L~--~~GVKdgskL~Lv~ 126 (289)
.|. ++-|++||.|.++-
T Consensus 85 ~l~gldt~L~dGDeV~iip 103 (114)
T 1wgk_A 85 LLGELDYQLQDQDSILFIS 103 (114)
T ss_dssp HHCTTTCBCCSSEEEEEEE
T ss_pred ccCCcCcCCCCCCEEEEeC
Confidence 332 36699999999885
No 145
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=81.94 E-value=2.3 Score=30.47 Aligned_cols=57 Identities=11% Similarity=0.127 Sum_probs=39.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCc--EEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 64 GPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQ--KVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 64 g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~Q--KLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
|.....++++...|+.+|.+.|..... ..... .+..+|+....+ .-|++||+|.++.
T Consensus 14 g~~~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~p 72 (77)
T 2q5w_D 14 QKAQEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS-----DFIQPNDTVALIP 72 (77)
T ss_dssp TCSEEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT-----SEECTTCEEEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC-----CCcCCCCEEEEEC
Confidence 444567788888899999999877631 01223 677888875433 4579999998874
No 146
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=81.73 E-value=3 Score=30.05 Aligned_cols=65 Identities=18% Similarity=0.303 Sum_probs=40.6
Q ss_pred EEEEEEe-CCeE-EEEEecCCCcHHHHHHHHHHHhCCCC--CCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 57 IRINVAR-GPSQ-YEVHVPARSTFGDLKKAISEKTGLDP--QEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 57 I~V~Vk~-g~~~-~~V~V~a~sTvgdLK~~I~e~TGvpp--~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
|.|+|++ +.-+ -.+++ ...|+++|.+.|....++.. ..-.+..+|....+ .+.-|++||+|.++-
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~P 69 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLP 69 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEEC
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEEC
Confidence 3566665 2111 24666 56799999999986544332 33455567776322 234589999999874
No 147
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=81.63 E-value=8.1 Score=32.10 Aligned_cols=74 Identities=19% Similarity=0.205 Sum_probs=50.7
Q ss_pred CCcEEEEEEeC-------CeEEEEEecCCCcHHHHHHHHHHHh--CCCC------CCcEEEEc----Cee-cCCc-----
Q 022980 54 GPVIRINVARG-------PSQYEVHVPARSTFGDLKKAISEKT--GLDP------QEQKVLFR----GKE-KEDN----- 108 (289)
Q Consensus 54 ~~~I~V~Vk~g-------~~~~~V~V~a~sTvgdLK~~I~e~T--Gvpp------~~QKLiyk----GK~-ldd~----- 108 (289)
..+++|.|... ...++|.|-..+||.++|++|-+.. |+|. ++.-|=++ |+. +.|.
T Consensus 22 y~~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~ 101 (138)
T 2r2o_A 22 YRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSE 101 (138)
T ss_dssp CCEEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCC
T ss_pred eEEEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCccc
Confidence 35677777542 3568899999999999999988754 4542 23344332 322 2221
Q ss_pred --------hhhhhcCCCCCCEEEEEee
Q 022980 109 --------EHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 109 --------~~L~~~GVKdgskL~Lv~~ 127 (289)
.+|.-|+|.||+.|-|+..
T Consensus 102 ~~~~wkrLNTL~HY~V~Dga~l~l~~~ 128 (138)
T 2r2o_A 102 VQGLWRRLNTLQHYKVPDGATVALVPC 128 (138)
T ss_dssp EETTEEECCBHHHHTCCTTCEEEEEEC
T ss_pred ccCCceeecchhccCCCCCCEEEEEEC
Confidence 2799999999999999864
No 148
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=77.37 E-value=6.7 Score=30.43 Aligned_cols=69 Identities=12% Similarity=0.028 Sum_probs=48.7
Q ss_pred CCCcEEEEEEe--CC--eEEEEEecCCCcHHHHHHHHHH---HhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEE
Q 022980 53 GGPVIRINVAR--GP--SQYEVHVPARSTFGDLKKAISE---KTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLL 125 (289)
Q Consensus 53 ~~~~I~V~Vk~--g~--~~~~V~V~a~sTvgdLK~~I~e---~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv 125 (289)
+-.+|.|.|.| .. ....+.++..+|+.++=+.+.- ...|.....++...|+... .+.-+++||+|-+.
T Consensus 9 ~~~~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIy 83 (97)
T 2hj1_A 9 SLNQINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIY 83 (97)
T ss_dssp --CEEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEEC
T ss_pred ccceEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEE
Confidence 45689999998 22 3457899999999998777542 2344455678888888865 33347999999887
Q ss_pred e
Q 022980 126 E 126 (289)
Q Consensus 126 ~ 126 (289)
.
T Consensus 84 r 84 (97)
T 2hj1_A 84 R 84 (97)
T ss_dssp C
T ss_pred e
Confidence 5
No 149
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=77.18 E-value=4.8 Score=28.31 Aligned_cols=58 Identities=12% Similarity=0.142 Sum_probs=41.1
Q ss_pred EeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 62 ARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 62 k~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
.-+++. ++++...|+.+|.+.+ ++++....+..+|..... ....+.-|++||+|.++.
T Consensus 4 ~vNg~~--~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~-~~~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 4 LFNDQA--MQCAAGQTVHELLEQL----DQRQAGAALAINQQIVPR-EQWAQHIVQDGDQILLFQ 61 (66)
T ss_dssp EESSCE--ECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECH-HHHTTCCCCTTEEECEEE
T ss_pred EECCEE--EEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCc-hhcCCcCCCCCCEEEEEe
Confidence 334543 4667788999998876 677777777788887543 223445689999998874
No 150
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=76.75 E-value=13 Score=29.29 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=36.6
Q ss_pred CCCCcEEEEEEeCCeEEEEEec--CCCcHHHHHHHHHHHhCCCCC
Q 022980 52 SGGPVIRINVARGPSQYEVHVP--ARSTFGDLKKAISEKTGLDPQ 94 (289)
Q Consensus 52 ~~~~~I~V~Vk~g~~~~~V~V~--a~sTvgdLK~~I~e~TGvpp~ 94 (289)
+-.+.+.+.|-|.|..+.+.|. ...|+.+|..++...+|++.-
T Consensus 10 ~m~~~v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~~~ 54 (101)
T 1wj6_A 10 SMEPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNTI 54 (101)
T ss_dssp SSCSCEEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCSSB
T ss_pred ccCccEEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCCce
Confidence 4567899999999999987774 478999999999999999744
No 151
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=76.73 E-value=7.6 Score=28.84 Aligned_cols=56 Identities=14% Similarity=0.247 Sum_probs=35.1
Q ss_pred EEEecCCCcHHHHHHHHHHHhC-C-----C-------CCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 69 EVHVPARSTFGDLKKAISEKTG-L-----D-------PQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 69 ~V~V~a~sTvgdLK~~I~e~TG-v-----p-------p~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
.+++ ...|+++|.+.|..... + . .....++.+|.......-+ +.-|++||.|.++.
T Consensus 20 ~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L~~gDeV~i~P 88 (93)
T 3dwg_C 20 SVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAIADGDSVTILP 88 (93)
T ss_dssp EEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBCCTTCEEEEEE
T ss_pred EEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCCCCCCEEEEEC
Confidence 4664 45799999999987642 0 0 0124556677764321112 34589999999885
No 152
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=76.00 E-value=3.7 Score=30.39 Aligned_cols=60 Identities=20% Similarity=0.168 Sum_probs=42.6
Q ss_pred EeCCeEEEEEecCCCcHHHHHHHHHHHhCCC-CCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 62 ARGPSQYEVHVPARSTFGDLKKAISEKTGLD-PQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 62 k~g~~~~~V~V~a~sTvgdLK~~I~e~TGvp-p~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
.-+|+.+++..+...|+.+|-+. .|++ ++..-+.++|..... ......-|++||+|-++.
T Consensus 4 ~vNGe~~e~~~~~~~Tl~~LL~~----l~~~~~~~vAVavNg~iVpr-~~~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 4 TVNGKPSTVDGAESLNVTELLSA----LKVAQAEYVTVELNGEVLER-EAFDATTVKDGDAVEFLY 64 (78)
T ss_dssp EETTEEEECSSCSCEEHHHHHHH----HTCSCTTTCCEEETTEECCT-THHHHCEECSSBCEEECC
T ss_pred EECCEEEEcCCCCCCcHHHHHHH----cCCCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEe
Confidence 33566554432266899998665 4888 888888899998543 345666789999998884
No 153
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=75.60 E-value=1.4 Score=45.04 Aligned_cols=57 Identities=16% Similarity=0.144 Sum_probs=47.1
Q ss_pred EEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCee-cCCchhhhhc
Q 022980 58 RINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKE-KEDNEHLDVS 114 (289)
Q Consensus 58 ~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~-ldd~~~L~~~ 114 (289)
.+........+.+.+.+..|+.+|+..|+..||++++.|-|++.+.. +++..+...|
T Consensus 314 ~~f~~~~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 314 SVMNMVSGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp ECCCSSSSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred ccccccccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 33333456677889999999999999999999999999999998776 7777777765
No 154
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=75.19 E-value=11 Score=29.00 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=38.4
Q ss_pred CCCcEEEEEEeCCeEEEEEecC--CCcHHHHHHHHHHHhCCCCCCcEEEEc
Q 022980 53 GGPVIRINVARGPSQYEVHVPA--RSTFGDLKKAISEKTGLDPQEQKVLFR 101 (289)
Q Consensus 53 ~~~~I~V~Vk~g~~~~~V~V~a--~sTvgdLK~~I~e~TGvpp~~QKLiyk 101 (289)
-.+.+.+.|-|.|..+.+.|.- ..|+.+|..++...+|++. ..|-|.
T Consensus 3 ~~~~v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~~--~~ikY~ 51 (87)
T 2bkf_A 3 MEPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNT--IQIKYL 51 (87)
T ss_dssp CCCCEEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCSS--EEEEEE
T ss_pred CCceEEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCCc--eEEEEE
Confidence 4577999999999999877754 7899999999999999973 344454
No 155
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.06 E-value=13 Score=28.80 Aligned_cols=57 Identities=19% Similarity=0.301 Sum_probs=42.9
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEE--cCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 65 PSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLF--RGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 65 ~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiy--kGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
..+|-|. + .++.||+.+.++.++|+...-+|+. .|.+.+|++++..+. ++..+|++.
T Consensus 20 s~k~GV~--A-~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tLp--~nT~lmvL~ 78 (91)
T 2eel_A 20 SSRRGVM--A-SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTLG--DNTHFMILE 78 (91)
T ss_dssp CCCEEEE--E-SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTSC--SSEEEEEEE
T ss_pred CeEEeEE--c-CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhCC--CCCEEEEEc
Confidence 3455553 3 4799999999999999765555543 599999999988865 777777776
No 156
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=74.91 E-value=10 Score=28.84 Aligned_cols=68 Identities=18% Similarity=0.231 Sum_probs=41.6
Q ss_pred CcEEEEEEe--------CCeEEEEEecCCCcHHHHHHHHHHHh-CCCC---------CCc-------EEEEcCeecCCch
Q 022980 55 PVIRINVAR--------GPSQYEVHVPARSTFGDLKKAISEKT-GLDP---------QEQ-------KVLFRGKEKEDNE 109 (289)
Q Consensus 55 ~~I~V~Vk~--------g~~~~~V~V~a~sTvgdLK~~I~e~T-Gvpp---------~~Q-------KLiykGK~ldd~~ 109 (289)
++|+|+|++ |...+++ + ..|+.+|.+.|.... ++.. ... .+..+|.......
T Consensus 2 ~mm~v~V~~fa~lr~~~g~~~~~l--~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~ 78 (99)
T 2l52_A 2 HMAEVKVKLFANLREAAGTPELPL--S-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE 78 (99)
T ss_dssp CCCEEEEEECTHHHHHHSSSEEEE--E-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT
T ss_pred CceEEEEEEeHHHHHHhCCCeEEE--e-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC
Confidence 357888887 3334444 4 579999999998773 1111 012 5667777632111
Q ss_pred hhhhcCCCCCCEEEEEe
Q 022980 110 HLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 110 ~L~~~GVKdgskL~Lv~ 126 (289)
-.+.-|++||+|.++.
T Consensus 79 -~~~~~L~~gD~V~i~p 94 (99)
T 2l52_A 79 -GLETLLKDSDEIGILP 94 (99)
T ss_dssp -STTSCCCTTEEEEEEC
T ss_pred -CCCCCCCCCCEEEEEC
Confidence 1233589999998874
No 157
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=72.92 E-value=8 Score=26.97 Aligned_cols=56 Identities=11% Similarity=0.135 Sum_probs=38.8
Q ss_pred eCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 63 RGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 63 ~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
-+++.++ + ...|+.+|.+.+ ++++....+..+|.....+ ...+.-|++||+|.++.
T Consensus 4 vNg~~~~--~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 4 LNGEPRP--L-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp ETTEEEC--C-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEE
T ss_pred ECCEEEE--c-CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEe
Confidence 3555554 4 567999998876 6777777777888874322 23344689999999874
No 158
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=72.90 E-value=8.1 Score=31.65 Aligned_cols=59 Identities=19% Similarity=0.321 Sum_probs=43.5
Q ss_pred EEEecC----CCcHHHHHHHHHHHhCCCC-------CCcEEEEcCeecC-CchhhhhcCCCCCCEEEEEee
Q 022980 69 EVHVPA----RSTFGDLKKAISEKTGLDP-------QEQKVLFRGKEKE-DNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 69 ~V~V~a----~sTvgdLK~~I~e~TGvpp-------~~QKLiykGK~ld-d~~~L~~~GVKdgskL~Lv~~ 127 (289)
.+.|+. .+|+++|-+.|....|-.. ..++|||-=-.-| -..+|.++||++|+.|+++..
T Consensus 9 vl~v~~~dl~~~TL~dLV~~l~~~~gy~~eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~DE 79 (127)
T 3onh_A 9 VIKLSSDCLNKMKLSDFVVLIREKYSYPQDISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSDE 79 (127)
T ss_dssp EEEECHHHHHHCBHHHHHHHHHHHHTCCSSEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEES
T ss_pred EEEeCcccccccCHHHHHHHHHHhcCCCCcEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEcc
Confidence 456654 3699999998988888753 2577777644422 256899999999999998853
No 159
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=72.63 E-value=8.4 Score=30.48 Aligned_cols=75 Identities=15% Similarity=0.238 Sum_probs=53.7
Q ss_pred CCCcEEEEEEeCCe-EEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEE---EcCee--cCCchhhhhcCCCCCCEEEEEe
Q 022980 53 GGPVIRINVARGPS-QYEVHVPARSTFGDLKKAISEKTGLDPQEQKVL---FRGKE--KEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 53 ~~~~I~V~Vk~g~~-~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLi---ykGK~--ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
+...|...|-.-.. ...+.++...|+.+++..++++++...+.+.|+ |.|-. +.+++.--.-.+.-+.+|++-.
T Consensus 6 ~sD~i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~ 85 (104)
T 1wgy_A 6 SGEEIFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYR 85 (104)
T ss_dssp CSSCCCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEE
T ss_pred CCCceEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEee
Confidence 44556666665433 457999999999999999999999987788886 55644 5554444444455589998875
Q ss_pred e
Q 022980 127 E 127 (289)
Q Consensus 127 ~ 127 (289)
.
T Consensus 86 k 86 (104)
T 1wgy_A 86 K 86 (104)
T ss_dssp C
T ss_pred h
Confidence 3
No 160
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=71.93 E-value=9.8 Score=37.61 Aligned_cols=72 Identities=11% Similarity=0.217 Sum_probs=57.1
Q ss_pred CCCcEEEEEEe---CCeEE----EEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEc----Cee--cC-Cchhhhhc--CC
Q 022980 53 GGPVIRINVAR---GPSQY----EVHVPARSTFGDLKKAISEKTGLDPQEQKVLFR----GKE--KE-DNEHLDVS--GM 116 (289)
Q Consensus 53 ~~~~I~V~Vk~---g~~~~----~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiyk----GK~--ld-d~~~L~~~--GV 116 (289)
....|.|++|| ..++. .+.|+..+++.+|-..|.+..|+|++.--.+|. |.. ++ ...++..+ +|
T Consensus 127 ~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL 206 (530)
T 2ylm_A 127 KDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDEL 206 (530)
T ss_dssp TTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTC
T ss_pred CCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhcc
Confidence 34569999997 22332 378999999999999999999999987666665 433 56 68899999 99
Q ss_pred CCCCEEEE
Q 022980 117 KDKSKVLL 124 (289)
Q Consensus 117 KdgskL~L 124 (289)
.+|+.|..
T Consensus 207 ~~GdII~f 214 (530)
T 2ylm_A 207 MDGDIIVF 214 (530)
T ss_dssp CTTEEEEE
T ss_pred cCCCEEEE
Confidence 99998654
No 161
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=71.84 E-value=17 Score=29.69 Aligned_cols=74 Identities=19% Similarity=0.206 Sum_probs=48.6
Q ss_pred CCCcEEEEEEe---C-------CeEEEEEecCCCcHHHHHHHHHHH----hCCCC----CCcEEEEc-Ce---ec-C---
Q 022980 53 GGPVIRINVAR---G-------PSQYEVHVPARSTFGDLKKAISEK----TGLDP----QEQKVLFR-GK---EK-E--- 106 (289)
Q Consensus 53 ~~~~I~V~Vk~---g-------~~~~~V~V~a~sTvgdLK~~I~e~----TGvpp----~~QKLiyk-GK---~l-d--- 106 (289)
...++++.|.. . ...++|.|-..+||.++|++|-+. .|+|. +.+-|-|+ |. .+ |
T Consensus 16 ey~tLtL~vv~~~~~~~~~~~~~~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~ 95 (126)
T 3kuz_A 16 FQGTVALNVVFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDS 95 (126)
T ss_dssp -CCEEEEEEEECCCTTSSCSCSCCEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCT
T ss_pred eeEEEEEEEEeeccCCCcCcCcCCceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCC
Confidence 34567777776 1 346888888999999999887653 37764 33444442 22 11 1
Q ss_pred ------C----chhhhhcCCCCCCEEEEEe
Q 022980 107 ------D----NEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 107 ------d----~~~L~~~GVKdgskL~Lv~ 126 (289)
+ --+|.-|+|.||+.|-|+.
T Consensus 96 tS~~~e~~wkrLNTL~HY~V~Dgatlal~k 125 (126)
T 3kuz_A 96 SSVILEDGITKLNTIGHYEISNGSTIKVFK 125 (126)
T ss_dssp TCCBCTTSCBCCCBTGGGTCCTTCEEEEEE
T ss_pred cceEecCCeeEeccccccCCCCCCEEEEee
Confidence 1 1267889999999998874
No 162
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=70.71 E-value=30 Score=27.08 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=47.2
Q ss_pred CcEEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCC--CcEEE--EcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 55 PVIRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQ--EQKVL--FRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 55 ~~I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~--~QKLi--ykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
+.=-++|.....+...-|-+. ++.+|+.+.++.++++.. .-+|+ ..|.+.+|.+++..+. ++..+|++..
T Consensus 17 ~~kPfkV~~~~~r~k~GV~A~-SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tLp--~nT~lmvL~~ 90 (100)
T 1f2r_I 17 PLKPCLLRRNHSRDQHGVAAS-SLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCLP--SNTKFVALAC 90 (100)
T ss_dssp CCEEEEEEETTEEEEEEEEES-SHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSSC--SCCEEEEECS
T ss_pred CCCCEEEeeCCCccEEeEEcC-CHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcCC--CCCEEEEEcC
Confidence 334445552222224555444 799999999999999753 24443 3699999999987754 8888888863
No 163
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=70.67 E-value=19 Score=29.03 Aligned_cols=73 Identities=16% Similarity=0.252 Sum_probs=49.3
Q ss_pred CCcEEEEEEe----CCeEEEEEecCCCcHHHHHHHHHHH--hCCC------CCCcEEEEc-C---ee-cCC-c-------
Q 022980 54 GPVIRINVAR----GPSQYEVHVPARSTFGDLKKAISEK--TGLD------PQEQKVLFR-G---KE-KED-N------- 108 (289)
Q Consensus 54 ~~~I~V~Vk~----g~~~~~V~V~a~sTvgdLK~~I~e~--TGvp------p~~QKLiyk-G---K~-ldd-~------- 108 (289)
..+++|.|.+ +...++|.|-..+||.++|++|-+. -|+| ++..-|-++ | +. +.| +
T Consensus 11 ~~~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~ 90 (117)
T 4e74_A 11 YKTLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIEN 90 (117)
T ss_dssp CCEEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC--
T ss_pred cEEEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecC
Confidence 3457777765 2345778888999999999998764 3454 234556553 3 21 222 1
Q ss_pred -----hhhhhcCCCCCCEEEEEe
Q 022980 109 -----EHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 109 -----~~L~~~GVKdgskL~Lv~ 126 (289)
.+|..|+|.||+.|-|+.
T Consensus 91 ~wkrLNTL~HY~V~dgatl~l~~ 113 (117)
T 4e74_A 91 DWKRLNTLAHYQVPDGSVVALVS 113 (117)
T ss_dssp -CCCCCBHHHHTCCTTCEEEEEE
T ss_pred cceEeccccccCCCCCCEEEEEe
Confidence 268999999999999875
No 164
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=69.85 E-value=12 Score=29.53 Aligned_cols=47 Identities=13% Similarity=0.217 Sum_probs=39.8
Q ss_pred CcEEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCee
Q 022980 55 PVIRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKE 104 (289)
Q Consensus 55 ~~I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ 104 (289)
..++|++-|+|++.-|.|+..-+|.||.+.+.+.+|-.. -|.|-..+
T Consensus 7 ~dvRiKfE~~GEkRIi~f~RPv~f~eL~~Kv~~~fGq~l---dL~y~n~E 53 (103)
T 2cu1_A 7 GDVRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFGQSM---DLHYTNNE 53 (103)
T ss_dssp CEEEEEEEETTEEEEEEEESSCCHHHHHHHHHHHHSSCE---EEEECSSS
T ss_pred CcEEEEEEecCeEEEEeccCCccHHHHHHHHHHHhCCee---eEEEecce
Confidence 468888889999999999999999999999999999744 46666443
No 165
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=69.34 E-value=9.2 Score=27.81 Aligned_cols=56 Identities=13% Similarity=0.057 Sum_probs=41.4
Q ss_pred eCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 63 RGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 63 ~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
-+|+.+++ ...|+.+|-+. .|++++..-+.++|..... ....+.-|++||+|-++.
T Consensus 5 vNG~~~e~---~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr-~~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 5 INGEQREV---QSASVAALMTE----LDCTGGHFAVALNYDVVPR-GKWDETPVTAGDEIEILT 60 (73)
T ss_dssp ETTEEECC---CCSBHHHHHHH----TTCCSSSCEEEESSSEECH-HHHTTCBCCTTCEEEEEC
T ss_pred ECCEEEEc---CCCcHHHHHHH----cCCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEc
Confidence 34665544 55799998654 6899998888899988432 345666789999999884
No 166
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=67.09 E-value=2.1 Score=31.22 Aligned_cols=49 Identities=18% Similarity=0.271 Sum_probs=37.1
Q ss_pred EEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEE
Q 022980 68 YEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLL 125 (289)
Q Consensus 68 ~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv 125 (289)
..++++...|+.+|.+.| ++++....+..+|+....+ .-|++||+|-++
T Consensus 23 ~~~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ 71 (77)
T 1rws_A 23 KEIEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVI 71 (77)
T ss_dssp CCCCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCS
T ss_pred EEEECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEE
Confidence 345677788999998765 5777777788899985443 458999998776
No 167
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=65.77 E-value=9.8 Score=29.60 Aligned_cols=62 Identities=10% Similarity=0.236 Sum_probs=41.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHHhCCC---CC--------CcEEEEcCe-ecC------CchhhhhcCCCCCCEEEEE
Q 022980 64 GPSQYEVHVPARSTFGDLKKAISEKTGLD---PQ--------EQKVLFRGK-EKE------DNEHLDVSGMKDKSKVLLL 125 (289)
Q Consensus 64 g~~~~~V~V~a~sTvgdLK~~I~e~TGvp---p~--------~QKLiykGK-~ld------d~~~L~~~GVKdgskL~Lv 125 (289)
|+...+|+|+++.|+.+|-+.|++.-.+. |. ...|++.+- .++ =..+|.++|+.+|+.|++.
T Consensus 3 g~~~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 3 SQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp --CCCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred CCCcEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 34456789999999999999999943322 21 344555541 121 2445899999999999875
No 168
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=64.06 E-value=5 Score=39.75 Aligned_cols=30 Identities=13% Similarity=0.342 Sum_probs=28.4
Q ss_pred EEEecCCCcHHHHHHHHHHHhCCCCCCcEE
Q 022980 69 EVHVPARSTFGDLKKAISEKTGLDPQEQKV 98 (289)
Q Consensus 69 ~V~V~a~sTvgdLK~~I~e~TGvpp~~QKL 98 (289)
.+.|..++|+.+|+..|++.+|+|+++|||
T Consensus 39 ~~rv~k~~~~~~l~~~va~~lg~~~~~~Rl 68 (530)
T 2ylm_A 39 VFKVLKNSSLAEFVQSLSQTMGFPQDQIRL 68 (530)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTSCGGGEEE
T ss_pred eEEEcCcCCHHHHHHHHHHHhCcCcccEEE
Confidence 578889999999999999999999999998
No 169
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=61.43 E-value=59 Score=26.50 Aligned_cols=71 Identities=14% Similarity=0.148 Sum_probs=47.9
Q ss_pred cEEEEEEe---CCeEEEEEecCCCcHHHHHHHHHHH--hCCC------CCCcEEEEc-C---ee-cCCc-----------
Q 022980 56 VIRINVAR---GPSQYEVHVPARSTFGDLKKAISEK--TGLD------PQEQKVLFR-G---KE-KEDN----------- 108 (289)
Q Consensus 56 ~I~V~Vk~---g~~~~~V~V~a~sTvgdLK~~I~e~--TGvp------p~~QKLiyk-G---K~-ldd~----------- 108 (289)
.++|.|.. ++..+++.|=..+||.++|++|-+. -|+| ++..-|=|+ | +. +.|.
T Consensus 4 ~ltl~~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~k 83 (127)
T 3h6n_A 4 PRNLNVSFQGCGMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRK 83 (127)
T ss_dssp EEEEEEEEETSCCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEE
T ss_pred EEEEEEEecCCCCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCcee
Confidence 34555543 3455778888899999999998764 3444 345666653 3 22 3221
Q ss_pred --hhhhhcCCCCCCEEEEEe
Q 022980 109 --EHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 109 --~~L~~~GVKdgskL~Lv~ 126 (289)
.+|..|+|.||++|-|+.
T Consensus 84 rLNTL~HY~V~dgatv~l~~ 103 (127)
T 3h6n_A 84 KLNTLAHYKIPEGASLAMSL 103 (127)
T ss_dssp CCCBTTTTTCCTTCEEEEEE
T ss_pred EeccccccCCCCCCEEEEEE
Confidence 268899999999999874
No 170
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=60.32 E-value=60 Score=25.50 Aligned_cols=71 Identities=14% Similarity=0.298 Sum_probs=53.8
Q ss_pred cEEEEEEe--C--CeEEEEEecCCCcHHHHHHHHHHHhCCCCC--CcEEEEcCee---cCCchhhhhcCCCCCCEEEEEe
Q 022980 56 VIRINVAR--G--PSQYEVHVPARSTFGDLKKAISEKTGLDPQ--EQKVLFRGKE---KEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 56 ~I~V~Vk~--g--~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~--~QKLiykGK~---ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
+++|+|.. . .....+.|..+.-||-|-.+|.+..+++-+ +.-|-.--|. +....+|..|||...+.|....
T Consensus 19 eL~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp 98 (102)
T 2kmc_A 19 ELVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTP 98 (102)
T ss_dssp EEEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEE
T ss_pred EEEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccC
Confidence 68888887 2 255778888889999999999999888743 4444443332 5677889999999999987653
No 171
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=59.23 E-value=53 Score=28.93 Aligned_cols=67 Identities=16% Similarity=0.233 Sum_probs=49.2
Q ss_pred EEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCC-cEEEE---cCee--cCCchhhhhcCCCCCCEEE
Q 022980 57 IRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQE-QKVLF---RGKE--KEDNEHLDVSGMKDKSKVL 123 (289)
Q Consensus 57 I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~-QKLiy---kGK~--ldd~~~L~~~GVKdgskL~ 123 (289)
|.|.|..-..++.+.|.+.+|+.||-..|+...||.... --|.| +|.. ++...+|...+++.+....
T Consensus 2 i~~~V~l~d~~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~ 74 (294)
T 1ef1_A 2 ISVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLL 74 (294)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEE
T ss_pred EEEEEEECCceEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEE
Confidence 566776643478899999999999999999999997542 34554 3433 7888888888776655543
No 172
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=58.76 E-value=31 Score=27.87 Aligned_cols=71 Identities=17% Similarity=0.242 Sum_probs=55.3
Q ss_pred CcEEEEEEeCCe-----EEEEEecCCCcHHHHHHH-HHHHhCCCCCC-------cEEEEcCee--cCCchhhhhcCCCCC
Q 022980 55 PVIRINVARGPS-----QYEVHVPARSTFGDLKKA-ISEKTGLDPQE-------QKVLFRGKE--KEDNEHLDVSGMKDK 119 (289)
Q Consensus 55 ~~I~V~Vk~g~~-----~~~V~V~a~sTvgdLK~~-I~e~TGvpp~~-------QKLiykGK~--ldd~~~L~~~GVKdg 119 (289)
....|.|-|... -+.+.||++.+|++|-+. |....+.+|+- -.-+-.|+. -|.+.+|.+.||...
T Consensus 22 g~qLlYigWd~HllFcap~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HK 101 (119)
T 3u52_E 22 GMQLLYVYWPDHLLFCAPFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHK 101 (119)
T ss_dssp TCEEEEEECTTCTTSCSCEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTT
T ss_pred CCEEEEEEecCCeeecCceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCch
Confidence 457888888542 367899999999999855 66788888763 234566777 578899999999999
Q ss_pred CEEEEE
Q 022980 120 SKVLLL 125 (289)
Q Consensus 120 skL~Lv 125 (289)
|-|-+.
T Consensus 102 s~lrf~ 107 (119)
T 3u52_E 102 SMLTVT 107 (119)
T ss_dssp EEEEEE
T ss_pred heEEEe
Confidence 998765
No 173
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=56.27 E-value=35 Score=24.63 Aligned_cols=57 Identities=18% Similarity=0.177 Sum_probs=36.2
Q ss_pred EEEecCCCcHHHHHHHHHHHhC------C-----CCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 69 EVHVPARSTFGDLKKAISEKTG------L-----DPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 69 ~V~V~a~sTvgdLK~~I~e~TG------v-----pp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
.++++...|+++|.+.|..... + ......+..+|+...... -.+.-|++||.|.++.
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~-~~~~~l~~gD~V~i~p 85 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMK-GLDTEIKDDDKIDLFP 85 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTC-SSSCBCCTTCEEEEEC
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccC-CCCcCCCCCCEEEEeC
Confidence 3456666899999999987641 1 013445677887643111 1233489999998874
No 174
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=54.60 E-value=18 Score=27.67 Aligned_cols=44 Identities=20% Similarity=0.234 Sum_probs=28.8
Q ss_pred chhhhhhHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 022980 191 SEELDTSAELLMKELLKLDGIEAEGEAKVQRKTEVRRVQKFHETLDNLK 239 (289)
Q Consensus 191 eke~~~LsE~LM~~LLKLD~Ie~eGdaR~~RK~~VkrVQ~~Le~LD~lk 239 (289)
+.+|..+.+-|.+.|-.+-+. .|+ +||.+|+.|+..|+..+.+-
T Consensus 7 E~df~~~~~~i~~~l~~~~~~--~ge---~Rk~~i~~ie~~ldEA~ell 50 (97)
T 3onj_A 7 ESDFKTTLEQAKASLAEAPSQ--PLS---QRNTTLKHVEQQQDELFDLL 50 (97)
T ss_dssp HHHHHHHHHHHHHHHHHGGGS--CHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcc--ChH---HHHHHHHHHHHHHHHHHHHH
Confidence 345666777777666655433 333 77888888888777776654
No 175
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=54.29 E-value=13 Score=27.71 Aligned_cols=37 Identities=22% Similarity=0.264 Sum_probs=30.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhCCC-----CCCcEEEEcC
Q 022980 66 SQYEVHVPARSTFGDLKKAISEKTGLD-----PQEQKVLFRG 102 (289)
Q Consensus 66 ~~~~V~V~a~sTvgdLK~~I~e~TGvp-----p~~QKLiykG 102 (289)
..+.|.||++.++.+|..+|..+.++. ....+|-|+.
T Consensus 2 D~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkD 43 (77)
T 1pqs_A 2 EIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 43 (77)
T ss_dssp CEEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEE
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEc
Confidence 357899999999999999999999975 3556676764
No 176
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=54.01 E-value=18 Score=27.89 Aligned_cols=45 Identities=13% Similarity=0.164 Sum_probs=25.8
Q ss_pred CchhhhhhHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 022980 190 PSEELDTSAELLMKELLKLDGIEAEGEAKVQRKTEVRRVQKFHETLDNLK 239 (289)
Q Consensus 190 ~eke~~~LsE~LM~~LLKLD~Ie~eGdaR~~RK~~VkrVQ~~Le~LD~lk 239 (289)
-+.+|..|...|.+.|-.|-+. .| .+||..|++|+..|+..+.+-
T Consensus 10 YE~df~~l~~~i~~kl~~i~~~--~g---eerk~~i~~ie~~l~EA~ell 54 (102)
T 1vcs_A 10 YEQDFAVLTAEITSKIARVPRL--PP---DEKKQMVANVEKQLEEARELL 54 (102)
T ss_dssp SHHHHHHHHHHHHHHHHHGGGS--CT---TTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcc--Cc---HHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666555443 23 255666666666666655544
No 177
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=53.57 E-value=39 Score=34.47 Aligned_cols=74 Identities=19% Similarity=0.211 Sum_probs=50.5
Q ss_pred CCcEEEEEEeC-------CeEEEEEecCCCcHHHHHHHHHHH--hCCCC------CCcEEEEc----Cee-cCCc-----
Q 022980 54 GPVIRINVARG-------PSQYEVHVPARSTFGDLKKAISEK--TGLDP------QEQKVLFR----GKE-KEDN----- 108 (289)
Q Consensus 54 ~~~I~V~Vk~g-------~~~~~V~V~a~sTvgdLK~~I~e~--TGvpp------~~QKLiyk----GK~-ldd~----- 108 (289)
..+++|.|... ...++|.|-..+||.++|++|-+. -|+|. ++.-|=++ |+. +.|.
T Consensus 255 ~~~ltL~v~~~~~~~~~~~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~ 334 (644)
T 3hm6_X 255 YRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSE 334 (644)
T ss_dssp CCEEEEEEECC-------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCC
T ss_pred ceeEEEEEeecCccccCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccce
Confidence 45677777641 245788888999999999998754 35552 34455543 222 2221
Q ss_pred --------hhhhhcCCCCCCEEEEEee
Q 022980 109 --------EHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 109 --------~~L~~~GVKdgskL~Lv~~ 127 (289)
.||..|+|+||+.|-|+..
T Consensus 335 ~~~~wkrLNTL~HY~V~dga~v~L~p~ 361 (644)
T 3hm6_X 335 VQGLWRRLNTLQHYKVPDGATVALVPC 361 (644)
T ss_dssp EETTEEECCBTTTTTCCTTCEEEEEEC
T ss_pred ecCcceeecchhhcCCCCCcEEEEEec
Confidence 3799999999999998853
No 178
>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45; DFF40, DFF45, protein-protein complex, CIDE, CIDE domain complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1
Probab=52.19 E-value=19 Score=30.03 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=40.5
Q ss_pred CCcHHHHHHHHHHHhCCCC--CCcEEE--EcCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 75 RSTFGDLKKAISEKTGLDP--QEQKVL--FRGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 75 ~sTvgdLK~~I~e~TGvpp--~~QKLi--ykGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
-.++.+|+.+.++.++|+. +.-+|+ ..|.+.+|.+++..+. ++..+|++..
T Consensus 81 A~SL~EL~~K~~~kL~l~~~~~~~~LvLeeDGTeVddEeYF~tLp--~nT~LmvL~~ 135 (145)
T 1ibx_B 81 ASCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDYFLCLP--SNTKFVALAS 135 (145)
T ss_dssp CSSHHHHHHHHHHHHTCSCTTSCCEEEETTTCCBCSSHHHHHHSC--SSCBEEEECS
T ss_pred cCCHHHHHHHHHHHhcCCCCccccEEEEeeCCcEEechhHhhcCC--CCCEEEEECC
Confidence 3479999999999999975 344544 4689999999998865 8888888863
No 179
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=51.22 E-value=52 Score=25.01 Aligned_cols=48 Identities=6% Similarity=0.167 Sum_probs=41.0
Q ss_pred CcEEEEEEeCCeEEEEEecCC--CcHHHHHHHHHHHhCCCCCCcEEEEcC
Q 022980 55 PVIRINVARGPSQYEVHVPAR--STFGDLKKAISEKTGLDPQEQKVLFRG 102 (289)
Q Consensus 55 ~~I~V~Vk~g~~~~~V~V~a~--sTvgdLK~~I~e~TGvpp~~QKLiykG 102 (289)
..+.|+.|++++..-+.++.. .++.+|..+++....++...--|-|..
T Consensus 5 ~~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y~D 54 (86)
T 1wmh_B 5 SIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTD 54 (86)
T ss_dssp CEEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEEC
T ss_pred CEEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEEEC
Confidence 568999999999888888744 699999999999999987777788875
No 180
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=48.58 E-value=49 Score=25.35 Aligned_cols=58 Identities=16% Similarity=0.237 Sum_probs=49.0
Q ss_pred EEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEE
Q 022980 68 YEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLL 125 (289)
Q Consensus 68 ~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv 125 (289)
..-+++-..+++.||..|+.+.|+.-..-.+...+..++++.+|-+-+|+-.-.|-+.
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQin 62 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLS 62 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEE
Confidence 3445666778999999999999999998888888888999999999999877666554
No 181
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=48.45 E-value=4.7 Score=31.89 Aligned_cols=68 Identities=13% Similarity=0.103 Sum_probs=38.8
Q ss_pred EEEEEEe-------CCeEEEEEecC----CCcHHHHHHHHHHHhCCCCCCcEEEEc-C--e------ec---CCchhhh-
Q 022980 57 IRINVAR-------GPSQYEVHVPA----RSTFGDLKKAISEKTGLDPQEQKVLFR-G--K------EK---EDNEHLD- 112 (289)
Q Consensus 57 I~V~Vk~-------g~~~~~V~V~a----~sTvgdLK~~I~e~TGvpp~~QKLiyk-G--K------~l---dd~~~L~- 112 (289)
|+|+|++ -+..+.|++|. ..||++|=..|++.. +..+-+|+.. | . .+ .|-+.|.
T Consensus 5 m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~--~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~g 82 (110)
T 2k9x_A 5 NHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNY--VKERPDLLVDQTGQTLRPGILVLVNSCDAEVVGG 82 (110)
T ss_dssp SCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTT--CCSCHHHHBCSSSSSBCTTEEEEESSSBHHHHTS
T ss_pred cEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHc--cccchhhEecCCCcccCCCeEEEECCeeeeccCC
Confidence 5666665 12467899984 359999888887764 1222233212 2 1 11 1222332
Q ss_pred -hcCCCCCCEEEEEe
Q 022980 113 -VSGMKDKSKVLLLE 126 (289)
Q Consensus 113 -~~GVKdgskL~Lv~ 126 (289)
+|-|++||.|.++-
T Consensus 83 ldt~L~dgD~V~fis 97 (110)
T 2k9x_A 83 MDYVLNDGDTVEFIS 97 (110)
T ss_dssp SCCCCCSSCEEEEEE
T ss_pred cccCCCCcCEEEEeC
Confidence 36699999988874
No 182
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=48.28 E-value=86 Score=27.91 Aligned_cols=68 Identities=9% Similarity=0.104 Sum_probs=50.6
Q ss_pred CCcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCC-CcEEEE--cCee--cCCchhhhhcCCCCCCEE
Q 022980 54 GPVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQ-EQKVLF--RGKE--KEDNEHLDVSGMKDKSKV 122 (289)
Q Consensus 54 ~~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~-~QKLiy--kGK~--ldd~~~L~~~GVKdgskL 122 (289)
...+.+.|.. ++ .+.+.|.+.+|+.||=..|+...||... ---|.| +|.. ++.+.+|...+++.+..+
T Consensus 20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~ 93 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPV 93 (314)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSE
T ss_pred CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCE
Confidence 3567777775 44 7889999999999999999999999753 233444 4543 788888988877665544
No 183
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=47.76 E-value=49 Score=25.57 Aligned_cols=46 Identities=11% Similarity=0.221 Sum_probs=38.5
Q ss_pred cEEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCee
Q 022980 56 VIRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKE 104 (289)
Q Consensus 56 ~I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ 104 (289)
.++|++-|.|++.-|.++..-.|.||.+.+...+|-+- -|.|-..+
T Consensus 4 dvRIKfE~~gEKRIi~f~RPvkf~dl~qkv~~afGq~l---dl~y~nnE 49 (94)
T 2jrh_A 4 DVRIKFEHNGERRIIAFSRPVKYEDVEHKVTTVFGQPL---DLHYMNNE 49 (94)
T ss_dssp CEEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHCSSE---EEEEECSS
T ss_pred ceEEEEEecCceEEEecCCCccHHHHHHHHHHHhCCee---eeEEecce
Confidence 47888889999999999999999999999999999654 35555443
No 184
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=47.53 E-value=23 Score=31.85 Aligned_cols=71 Identities=13% Similarity=-0.001 Sum_probs=48.9
Q ss_pred CCcEEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCC-CcEEEEc---Cee--cCCchhhhhcCCCCCCEEEE
Q 022980 54 GPVIRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQ-EQKVLFR---GKE--KEDNEHLDVSGMKDKSKVLL 124 (289)
Q Consensus 54 ~~~I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~-~QKLiyk---GK~--ldd~~~L~~~GVKdgskL~L 124 (289)
...+.+.|.. ++..+.+.|.+.+|+.||=..|+...||... ---|.|. |.. ++...+|.........++.+
T Consensus 15 ~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~f 92 (296)
T 3qij_A 15 YFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTF 92 (296)
T ss_dssp --CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEE
T ss_pred CceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEE
Confidence 3567788875 6678999999999999999999999999753 2445443 322 78778887765433344444
No 185
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=46.59 E-value=76 Score=32.27 Aligned_cols=74 Identities=18% Similarity=0.257 Sum_probs=50.3
Q ss_pred CCcEEEEEEe----CCeEEEEEecCCCcHHHHHHHHHHH--hCCC------CCCcEEEEc----Cee-cCC---------
Q 022980 54 GPVIRINVAR----GPSQYEVHVPARSTFGDLKKAISEK--TGLD------PQEQKVLFR----GKE-KED--------- 107 (289)
Q Consensus 54 ~~~I~V~Vk~----g~~~~~V~V~a~sTvgdLK~~I~e~--TGvp------p~~QKLiyk----GK~-ldd--------- 107 (289)
...++|.|.. +...++|.|-..+||.++|++|-+. -|+| +++.-|=++ |+. +.|
T Consensus 231 ~~~ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~ 310 (627)
T 3ig3_A 231 YKTLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIEC 310 (627)
T ss_dssp CCEEEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEET
T ss_pred ceeEEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccC
Confidence 4567888864 2356788888999999999998765 3444 244555442 222 222
Q ss_pred ----chhhhhcCCCCCCEEEEEee
Q 022980 108 ----NEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 108 ----~~~L~~~GVKdgskL~Lv~~ 127 (289)
--+|..|+|+||+.|-|+..
T Consensus 311 ~wkrLNTL~HY~V~Dga~v~L~p~ 334 (627)
T 3ig3_A 311 DWKRVNSLAHYQVTDGSLVALVPK 334 (627)
T ss_dssp TEEECCBTTTTTCCTTCEEEEEEC
T ss_pred ceeEecchhhcCCCCCceEEEEec
Confidence 12689999999999999854
No 186
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=45.06 E-value=52 Score=25.73 Aligned_cols=44 Identities=11% Similarity=0.203 Sum_probs=37.8
Q ss_pred CcEEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEc
Q 022980 55 PVIRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFR 101 (289)
Q Consensus 55 ~~I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiyk 101 (289)
..++|..-|.|++.-|.++..-.|.||.+.+...+|-+-+ |.|-
T Consensus 19 ~dvRIKfE~~gEkRIi~f~RPv~f~el~~kv~~afGq~ld---l~y~ 62 (100)
T 2npt_B 19 NDVRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFGQSMD---LHYT 62 (100)
T ss_dssp CCEEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHTSCEE---EEEE
T ss_pred cceEEEEEecCceEEEecCCCccHHHHHHHHHHHhCCeee---eEEe
Confidence 4688888899999999999999999999999999996543 5554
No 187
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=44.80 E-value=1.1e+02 Score=27.89 Aligned_cols=70 Identities=14% Similarity=0.205 Sum_probs=51.2
Q ss_pred EEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCC-CCcEEEEcC---------eecCCchhhhhcCCCCCCEEEEE
Q 022980 57 IRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDP-QEQKVLFRG---------KEKEDNEHLDVSGMKDKSKVLLL 125 (289)
Q Consensus 57 I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp-~~QKLiykG---------K~ldd~~~L~~~GVKdgskL~Lv 125 (289)
+.+.|.. +|....+.|.+.+|+.+|-..|+...|+.. +.--|.|.. ..++...++...++....++.+.
T Consensus 86 ~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~fr 165 (371)
T 3ivf_A 86 RPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLLR 165 (371)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEEE
T ss_pred eEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEEE
Confidence 5666664 567889999999999999999999999974 334455532 12667777888777767776654
Q ss_pred e
Q 022980 126 E 126 (289)
Q Consensus 126 ~ 126 (289)
.
T Consensus 166 v 166 (371)
T 3ivf_A 166 R 166 (371)
T ss_dssp E
T ss_pred E
Confidence 3
No 188
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=44.80 E-value=56 Score=26.83 Aligned_cols=81 Identities=20% Similarity=0.250 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHH--------HHHHhcCC------------CCCCchhhhhhHHHHHHHHHhhcCC
Q 022980 153 EEMRKALQAIAGVRAEVDK-LSERVAS--------LEVAVNGG------------TKVPSEELDTSAELLMKELLKLDGI 211 (289)
Q Consensus 153 ~~i~ka~~aI~~i~~evd~-La~~v~~--------~e~~~~~g------------~k~~eke~~~LsE~LM~~LLKLD~I 211 (289)
..|+.-.+.|...++.+++ |..-|+. |..++.+. -+...++-+.|+..|...|++||.-
T Consensus 23 ~~Iq~y~~~i~~ar~Rl~e~L~~lI~~~~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~LD~A 102 (133)
T 3ls0_A 23 AQLQVYVNPIAVARDGMEKRLQGLIADQNWVDTQTYIHGPLGQLRRDMLGLASSLLPKDQDKAKTLAKEVFGHLERLDAA 102 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHTTTTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhhcchHHHHHHHhchHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4455556667777777766 6544443 22222211 0133578899999999999999987
Q ss_pred CCch---hHHHHHHHHHHHHHHHHH
Q 022980 212 EAEG---EAKVQRKTEVRRVQKFHE 233 (289)
Q Consensus 212 e~eG---daR~~RK~~VkrVQ~~Le 233 (289)
...+ .+..+=.+++.-.++||+
T Consensus 103 A~~~n~~~a~k~Y~~a~adfdafl~ 127 (133)
T 3ls0_A 103 AKDRNGSQAKIQYQEALADFDSFLN 127 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 5444 444444555666666654
No 189
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=43.86 E-value=44 Score=25.70 Aligned_cols=44 Identities=18% Similarity=0.082 Sum_probs=20.0
Q ss_pred hhhhhhHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 022980 192 EELDTSAELLMKELLKLDGIEAEGEAKVQRKTEVRRVQKFHETLDNLK 239 (289)
Q Consensus 192 ke~~~LsE~LM~~LLKLD~Ie~eGdaR~~RK~~VkrVQ~~Le~LD~lk 239 (289)
.+|..|...|.+.|-.+-+.. .| .+||..|+.|+..|+..+.+-
T Consensus 22 ~df~~l~~~i~~kl~~i~~~~-~~---e~rk~~i~~ie~~ldEA~eLl 65 (102)
T 2qyw_A 22 EIFRGLLEDLQGVPERLLGTA-GT---EEKKKLVRDFDEKQQEANETL 65 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHTCC-CS---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccC-Cc---HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555444432211 11 245555555555555554443
No 190
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=43.54 E-value=87 Score=23.92 Aligned_cols=57 Identities=16% Similarity=0.238 Sum_probs=44.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhCCCCCCcE-EEEcCeecCCchhhhhcCCCCCCEEEEE
Q 022980 66 SQYEVHVPARSTFGDLKKAISEKTGLDPQEQK-VLFRGKEKEDNEHLDVSGMKDKSKVLLL 125 (289)
Q Consensus 66 ~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QK-LiykGK~ldd~~~L~~~GVKdgskL~Lv 125 (289)
.+|.+.|+..+|=-++|+.++..+||.+.... |++.||.+.... ..|-+++-|-..+
T Consensus 28 n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~kR~g~---~~G~~~~~KKAiV 85 (93)
T 3r8s_T 28 NTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQ---RIGRRSDWKKAYV 85 (93)
T ss_dssp SEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCBCCSSS---SCCBCCCEEEEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCceeeeCC---ccccCCCcEEEEE
Confidence 58999999999999999999999999998755 678998854332 2455666554433
No 191
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=43.42 E-value=34 Score=26.12 Aligned_cols=58 Identities=12% Similarity=0.142 Sum_probs=50.1
Q ss_pred EEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCee-cCCchhhhhcCCCCCCEEEEEe
Q 022980 69 EVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKE-KEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 69 ~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~-ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
.+.||..+.|..+-+-.++.+.||+..--+|-.... .....+-...=+|.|+.|-|+.
T Consensus 27 vlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIP 85 (92)
T 1j0g_A 27 VLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIP 85 (92)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEE
T ss_pred EEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEecc
Confidence 589999999999999999999999988778877666 7777777777789999999984
No 192
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=43.30 E-value=43 Score=26.49 Aligned_cols=67 Identities=18% Similarity=0.192 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhh--hhhHHHHHHHHHhhc--CCCC--------ch-hHHHHHHHHHHH
Q 022980 161 AIAGVRAEVDKLSERVASLEVAVNGGTKVPSEEL--DTSAELLMKELLKLD--GIEA--------EG-EAKVQRKTEVRR 227 (289)
Q Consensus 161 aI~~i~~evd~La~~v~~~e~~~~~g~k~~eke~--~~LsE~LM~~LLKLD--~Ie~--------eG-daR~~RK~~Vkr 227 (289)
.|.....+++.|...+..+| +-+|.=| ++-+|.|+|.-..++ ||.. .| +.-..=-.++++
T Consensus 19 ei~~L~~ei~eLk~~ve~lE-------kERDFYF~KLRdIEiLcQe~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k 91 (106)
T 4e61_A 19 TIGSLNEEIEQYKGTVSTLE-------IEREFYFNKLRDIEILVHTTQDLINEGVYKFNDETITGHGNGNGGALLRFVKK 91 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhhcccccccchhHHHHHHH
Confidence 34444445555555555443 2233333 556899999977662 3322 22 111112257899
Q ss_pred HHHHHHH
Q 022980 228 VQKFHET 234 (289)
Q Consensus 228 VQ~~Le~ 234 (289)
||.+|=.
T Consensus 92 Iq~ILYa 98 (106)
T 4e61_A 92 VESILYA 98 (106)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9998743
No 193
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=41.42 E-value=61 Score=25.67 Aligned_cols=46 Identities=9% Similarity=0.200 Sum_probs=39.0
Q ss_pred CcEEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCe
Q 022980 55 PVIRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGK 103 (289)
Q Consensus 55 ~~I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK 103 (289)
..++|++-|.|++.-|.++..-.+.||.+.+...+|-+-+ |.|-..
T Consensus 30 ~dvRIKfE~~gEKRIiqf~RPvkf~dl~qkv~~afGq~ld---l~y~nn 75 (111)
T 2c60_A 30 SDVRIKFEHNGERRIIAFSRPVKYEDVEHKVTTVFGQPLD---LHYMNN 75 (111)
T ss_dssp CCEEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHSSCCE---EEEECS
T ss_pred cceEEEEEecCceEEEecCCCccHHHHHHHHHHHhCCeee---eEEecc
Confidence 4688888899999999999999999999999999996654 555433
No 194
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=41.08 E-value=46 Score=27.21 Aligned_cols=46 Identities=11% Similarity=0.078 Sum_probs=32.9
Q ss_pred CCchhhhhhHHHHHHHHHhhcCCCCch---hHHHHHHHHHHHHHHHHHH
Q 022980 189 VPSEELDTSAELLMKELLKLDGIEAEG---EAKVQRKTEVRRVQKFHET 234 (289)
Q Consensus 189 ~~eke~~~LsE~LM~~LLKLD~Ie~eG---daR~~RK~~VkrVQ~~Le~ 234 (289)
...++-+.|+..|...|++||.-.-.+ .+..+=.++|.-..+||+-
T Consensus 77 ~dqk~A~~lak~l~~~L~~LD~AA~~~n~~~a~k~Y~~a~adfdafl~l 125 (130)
T 3zsu_A 77 KDQPTPTALTRALTDDFLKIDQGADLDSVTVAQEGFREAEADFKAYLNS 125 (130)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHh
Confidence 457889999999999999999875444 4444445556666666553
No 195
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=40.87 E-value=50 Score=26.62 Aligned_cols=71 Identities=14% Similarity=0.220 Sum_probs=51.4
Q ss_pred CCcEEEEEEeCCeEE-EEEecCCCcHHHHHHHHHHHhCCCCC------CcEEE---EcCee--cC--CchhhhhcCCCCC
Q 022980 54 GPVIRINVARGPSQY-EVHVPARSTFGDLKKAISEKTGLDPQ------EQKVL---FRGKE--KE--DNEHLDVSGMKDK 119 (289)
Q Consensus 54 ~~~I~V~Vk~g~~~~-~V~V~a~sTvgdLK~~I~e~TGvpp~------~QKLi---ykGK~--ld--d~~~L~~~GVKdg 119 (289)
...|...|-.-..+| .+.++...|+.+++..++++++...+ .+.|+ |.|-. +. |......+|+ +
T Consensus 7 ~Dei~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~--N 84 (120)
T 2dhz_A 7 GDEIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGI--N 84 (120)
T ss_dssp CCCEEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCS--S
T ss_pred CCcEEEEEEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccc--c
Confidence 346777776644444 79999999999999999999998654 67775 55644 43 4445566665 8
Q ss_pred CEEEEEe
Q 022980 120 SKVLLLE 126 (289)
Q Consensus 120 skL~Lv~ 126 (289)
.+|++-.
T Consensus 85 gRLfvc~ 91 (120)
T 2dhz_A 85 SHLFACT 91 (120)
T ss_dssp EEEEEEC
T ss_pred ceEEEee
Confidence 8998875
No 196
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=38.66 E-value=1.1e+02 Score=30.45 Aligned_cols=69 Identities=12% Similarity=0.128 Sum_probs=50.5
Q ss_pred cEEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCC-CcEEEEc---Ce--ecCCchhhhhcCCCCCCEEEE
Q 022980 56 VIRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQ-EQKVLFR---GK--EKEDNEHLDVSGMKDKSKVLL 124 (289)
Q Consensus 56 ~I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~-~QKLiyk---GK--~ldd~~~L~~~GVKdgskL~L 124 (289)
.|.|.|..-..++.|.|.+.+|+.+|-..|+...||... .--|.|. |. .++...+|...+++.+..+.|
T Consensus 4 ~i~v~V~llDgt~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L 78 (575)
T 2i1j_A 4 SMNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQF 78 (575)
T ss_dssp EEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEE
T ss_pred eEEEEEEeCCCeEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEE
Confidence 477777763336889999999999999999999999643 3455553 32 277788888887776665433
No 197
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=37.82 E-value=1.3e+02 Score=22.77 Aligned_cols=72 Identities=18% Similarity=0.201 Sum_probs=43.4
Q ss_pred CCcEEEEEEe--CCeEEEEEecCCC-cHHHHHHHHHHHhCCCCCC-cEEEEcC---eecCCchhhhhcCCCCCCEEEEEe
Q 022980 54 GPVIRINVAR--GPSQYEVHVPARS-TFGDLKKAISEKTGLDPQE-QKVLFRG---KEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 54 ~~~I~V~Vk~--g~~~~~V~V~a~s-TvgdLK~~I~e~TGvpp~~-QKLiykG---K~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
+.+-.|.-|+ ......|.++... +|.|||+.|.+..++-..+ .-.||.. .+-.|+..| |--++.|++-.
T Consensus 4 ~~mS~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~i~na~T~eeY~Dd~~l----IprnssViVrR 79 (86)
T 2c7h_A 4 GSMSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNAQTKEEYTDDNAL----IPKNSSVIVRR 79 (86)
T ss_dssp TTBEEEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEEEEEESSSCCEECSTTCE----EETTCCEEEEE
T ss_pred cceeEEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccEEEeCCCCCCccCCCceE----EecCCEEEEEe
Confidence 3455566665 4455679998765 9999999999998885433 3345553 332222222 44456665554
Q ss_pred eCC
Q 022980 127 ELT 129 (289)
Q Consensus 127 ~~~ 129 (289)
-|.
T Consensus 80 vP~ 82 (86)
T 2c7h_A 80 IPI 82 (86)
T ss_dssp EEC
T ss_pred ccC
Confidence 443
No 198
>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll, apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1
Probab=37.02 E-value=51 Score=26.68 Aligned_cols=65 Identities=14% Similarity=0.212 Sum_probs=45.6
Q ss_pred EEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCCcEEEE--cCeecCCchhhhhcCCCCCCEEEEEee
Q 022980 57 IRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQEQKVLF--RGKEKEDNEHLDVSGMKDKSKVLLLEE 127 (289)
Q Consensus 57 I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiy--kGK~ldd~~~L~~~GVKdgskL~Lv~~ 127 (289)
.+|.=.+...++-|- + .++.||+.+.++.+++. ..-+|+. .|.+.+|++++..+. ++..+|+++.
T Consensus 38 fKV~~~~Rs~k~GV~--A-~SL~EL~~K~~~~l~l~-~~~~lvLeeDGT~VddEeYF~tLp--~nT~lmvL~~ 104 (122)
T 1d4b_A 38 FRVCDHKRTIRKGLT--A-ATRQELLAKALETLLLN-GVLTLVLEEDGTAVDSEDFFQLLE--DDTCLMVLQS 104 (122)
T ss_dssp EEEECSSSSCEEEEE--E-CCSSTHHHHHHHHHSCC-SSCEEEETTTTEEECSTHHHHHSS--SCCCCCEECS
T ss_pred EEEecCCCCeEEeEE--c-CCHHHHHHHHHHHhccC-CCcEEEEEeCCcEEechhHhhcCC--CCCEEEEecC
Confidence 444333344555553 3 47999999999999994 3445443 699999999998865 8888888863
No 199
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=35.03 E-value=83 Score=24.39 Aligned_cols=73 Identities=12% Similarity=0.114 Sum_probs=49.9
Q ss_pred EEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCC-CcEEE--Ec--C--eecCCchh----hhhcCCCCCCEEEE
Q 022980 57 IRINVAR-GPSQYEVHVPARSTFGDLKKAISEKTGLDPQ-EQKVL--FR--G--KEKEDNEH----LDVSGMKDKSKVLL 124 (289)
Q Consensus 57 I~V~Vk~-g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~-~QKLi--yk--G--K~ldd~~~----L~~~GVKdgskL~L 124 (289)
+.|+|-. .+....|.|++..|.+|+-++|++..++... .--|+ +. | +.++|.+. |.+.++....+++.
T Consensus 10 ~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~nr~~F 89 (100)
T 1wgr_A 10 HVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSRFVF 89 (100)
T ss_dssp EEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCEEEE
T ss_pred EEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCcEEEE
Confidence 4444443 4567899999999999999999999998743 22232 11 2 33677665 55667777888887
Q ss_pred EeeCC
Q 022980 125 LEELT 129 (289)
Q Consensus 125 v~~~~ 129 (289)
....+
T Consensus 90 ~kr~~ 94 (100)
T 1wgr_A 90 RKNFA 94 (100)
T ss_dssp CSCCS
T ss_pred ecchh
Confidence 66543
No 200
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=31.11 E-value=77 Score=24.17 Aligned_cols=56 Identities=20% Similarity=0.286 Sum_probs=42.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhCCCCCCcE-EEEcCeecCCchhhhhcCCCCCCEEEE
Q 022980 66 SQYEVHVPARSTFGDLKKAISEKTGLDPQEQK-VLFRGKEKEDNEHLDVSGMKDKSKVLL 124 (289)
Q Consensus 66 ~~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QK-LiykGK~ldd~~~L~~~GVKdgskL~L 124 (289)
.+|.+.|+..+|=-++|+.++..+||.+.... |++.||.+.... ..|-+++-|-..
T Consensus 22 n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK~kR~g~---~~G~~~~~KKA~ 78 (92)
T 3tve_T 22 GKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKKRLGR---YLGKRPDRKKAI 78 (92)
T ss_dssp TEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCCEEESSS---CEEECCCEEEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCceeeecc---ccccCCCceEEE
Confidence 57999999999999999999999999988655 678898853322 245556655433
No 201
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=30.60 E-value=1.3e+02 Score=25.07 Aligned_cols=56 Identities=13% Similarity=0.268 Sum_probs=36.3
Q ss_pred EEEecCCCcHHHHHHHHHHHhC-CC---------CCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 69 EVHVPARSTFGDLKKAISEKTG-LD---------PQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 69 ~V~V~a~sTvgdLK~~I~e~TG-vp---------p~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
.++++. .|+++|.+.|..... +. .....+..+|........ .+.-|++||+|.++-
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~~-~dt~L~dGDeVai~P 82 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQG-LSTPLSPGATLDLFP 82 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTTG-GGCBCCTTCEEEEEC
T ss_pred eEEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcCC-CccCCCCCCEEEEEC
Confidence 456666 899999999887631 10 123456677777443222 234589999999984
No 202
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=28.95 E-value=39 Score=27.00 Aligned_cols=70 Identities=14% Similarity=0.254 Sum_probs=51.8
Q ss_pred cEEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCC--CcEEEEcCee---cCCchhhhhcCCCCCCEEEEE
Q 022980 56 VIRINVARGPSQYEVHVPARSTFGDLKKAISEKTGLDPQ--EQKVLFRGKE---KEDNEHLDVSGMKDKSKVLLL 125 (289)
Q Consensus 56 ~I~V~Vk~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp~--~QKLiykGK~---ldd~~~L~~~GVKdgskL~Lv 125 (289)
+++|+|..-+....+.|..+.-||-|-.+|.+..+++-+ +.-|-.--|. +....+|..|||...+++...
T Consensus 26 eL~V~V~d~~~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ft 100 (112)
T 2lgx_A 26 ELSVHVTDVNRDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFT 100 (112)
T ss_dssp CEECCBTTTTBCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBB
T ss_pred EEEEEEecCCccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceec
Confidence 577777765566778888888999999999999887632 3333333222 566778999999999987654
No 203
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=25.69 E-value=2.2e+02 Score=21.50 Aligned_cols=69 Identities=16% Similarity=0.208 Sum_probs=45.5
Q ss_pred cEEEEEEeCCeEEEEEec-CCCcHHHHHHHHHH----HhCCCCCC----cEEEE-cCeecCCchhhhhcCCCCCCEEEEE
Q 022980 56 VIRINVARGPSQYEVHVP-ARSTFGDLKKAISE----KTGLDPQE----QKVLF-RGKEKEDNEHLDVSGMKDKSKVLLL 125 (289)
Q Consensus 56 ~I~V~Vk~g~~~~~V~V~-a~sTvgdLK~~I~e----~TGvpp~~----QKLiy-kGK~ldd~~~L~~~GVKdgskL~Lv 125 (289)
.|+|+|..|+.+..|... ...||.+|-++... ..+-.++. ..|-+ .|..||.+..|.+. +.|++.|+-+
T Consensus 2 ~MKvtV~fg~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~k~~~~~v~V~~l~~~~ggiLD~DD~l~dV-ldD~e~i~A~ 80 (85)
T 2ns5_A 2 EFKVTVCFGRTRVDVPCGDGRMKVFSLIQQAVTRYRKAVAKDPNYWIQVHRLEHGDGGILDLDDILCDV-ADDKDRLVAV 80 (85)
T ss_dssp CEEEEEEETTEEEEEEESSSCCCHHHHHHHHHHHHHHHTTCCTTSCEEEEEEECSSSCEECTTSCHHHH-SCTTEEEEEE
T ss_pred ccEEEEEECCEEEEEECCCCcccHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEeCCCcEeCcccchhhh-ccCcceEEEE
Confidence 479999999998888774 44599998766433 34543322 22335 45568888887774 5577776554
No 204
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=24.56 E-value=93 Score=25.17 Aligned_cols=59 Identities=15% Similarity=0.217 Sum_probs=40.6
Q ss_pred CcEEEEEE-eCCeE-------EEEEecCCCcHHHHHHHHHHHhCCCCCCcEEE-EcCee-cCCchhhhh
Q 022980 55 PVIRINVA-RGPSQ-------YEVHVPARSTFGDLKKAISEKTGLDPQEQKVL-FRGKE-KEDNEHLDV 113 (289)
Q Consensus 55 ~~I~V~Vk-~g~~~-------~~V~V~a~sTvgdLK~~I~e~TGvpp~~QKLi-ykGK~-ldd~~~L~~ 113 (289)
..|-|.|. +.+.. .-+-||.+.||+++...|....++++++--.+ |-+.. -..+.++.+
T Consensus 34 ~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~ 102 (130)
T 2zjd_A 34 TKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISE 102 (130)
T ss_dssp TEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHH
T ss_pred CceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHH
Confidence 45666663 32222 23568999999999999999999999866655 77665 334444443
No 205
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=24.35 E-value=74 Score=21.83 Aligned_cols=50 Identities=14% Similarity=0.067 Sum_probs=32.3
Q ss_pred EEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCeecCCchhhhhcCCCCCCEEEEEe
Q 022980 70 VHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKEKEDNEHLDVSGMKDKSKVLLLE 126 (289)
Q Consensus 70 V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~ldd~~~L~~~GVKdgskL~Lv~ 126 (289)
+.++...|+.+|-..|... +.....-..++|+..+-+ +-|++|+.|-++.
T Consensus 13 ~~~~~g~T~~dla~~i~~~--l~~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt 62 (73)
T 2kmm_A 13 KRLPQGATALDFAYSLHSD--LGDHCIGAKVNHKLVPLS-----YVLNSGDQVEVLS 62 (73)
T ss_dssp EEECTTCBHHHHHHHHCSH--HHHTEEEEEETTEECCTT-----CBCCSSSBEEEEE
T ss_pred EEcCCCCcHHHHHHHHhhc--cccceEEEEECCEEeCCC-----cCcCCCCEEEEEE
Confidence 6778889999997776321 112222234678875543 4567899988875
No 206
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=22.29 E-value=85 Score=23.56 Aligned_cols=37 Identities=16% Similarity=0.199 Sum_probs=25.8
Q ss_pred CCCcEEEEEE-eCCeEEEEEecCCCcHHHHHHHHHHHhCCCC
Q 022980 53 GGPVIRINVA-RGPSQYEVHVPARSTFGDLKKAISEKTGLDP 93 (289)
Q Consensus 53 ~~~~I~V~Vk-~g~~~~~V~V~a~sTvgdLK~~I~e~TGvpp 93 (289)
+..+++|++. ..+..+.|.+++..|+-+. +..-||+.
T Consensus 3 ~~~m~~V~~~~~~g~~~~v~~~~g~tLL~a----a~~~gi~i 40 (108)
T 2bt6_A 3 SGDKITVHFINRDGETLTTKGKIGDSLLDV----VVQNNLDI 40 (108)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTCBHHHH----HHHTTCCC
T ss_pred CCceEEEEEECCCCCEEEEEECCCChHHHH----HHHcCCCC
Confidence 4567889988 4667899999999998764 23356543
No 207
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=21.93 E-value=1.7e+02 Score=22.34 Aligned_cols=56 Identities=21% Similarity=0.311 Sum_probs=42.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhCCCCCCcE-EEEcCeecCCchhhhhcCCCCCCEEEEE
Q 022980 67 QYEVHVPARSTFGDLKKAISEKTGLDPQEQK-VLFRGKEKEDNEHLDVSGMKDKSKVLLL 125 (289)
Q Consensus 67 ~~~V~V~a~sTvgdLK~~I~e~TGvpp~~QK-LiykGK~ldd~~~L~~~GVKdgskL~Lv 125 (289)
.|.+.|+..+|=-++|+.|+..+||.+.... +++.||.+.... ..|-+.+-|-..+
T Consensus 24 ~y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~gK~kR~g~---~~G~~~~~KKAiV 80 (95)
T 2zjr_Q 24 VYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGKRKRVGR---FIGQRNDRKKAIV 80 (95)
T ss_dssp CCEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCCCCSSSS---CCCCCCCBEEEEE
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeCCccceecc---ccccCCCcEEEEE
Confidence 3899999999999999999999999998765 567888754321 2466666664443
No 208
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=21.37 E-value=1.3e+02 Score=23.35 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=31.8
Q ss_pred EEecCCCcHHHHHHHHHHHhCCCCCCcEEEEcCee-cCCchhhhh
Q 022980 70 VHVPARSTFGDLKKAISEKTGLDPQEQKVLFRGKE-KEDNEHLDV 113 (289)
Q Consensus 70 V~V~a~sTvgdLK~~I~e~TGvpp~~QKLiykGK~-ldd~~~L~~ 113 (289)
+-||.+.||++|...|....++++++--.+|-+.. ...+++|.+
T Consensus 48 flVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~ 92 (110)
T 2r2q_A 48 YLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQ 92 (110)
T ss_dssp EEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHH
T ss_pred EEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHH
Confidence 47888999999999999999999976544554443 344455544
Done!