BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022981
(289 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O22315|SRSF1_ARATH Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1
SV=1
Length = 303
Score = 234 bits (598), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 138/231 (59%), Positives = 157/231 (67%), Gaps = 28/231 (12%)
Query: 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAED 60
MS R SRT+YVGNLP DIRE EVEDLF KYG ++ I+LK+PPRPP Y FVEF++ARDAED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 61 AIRGRDGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGIS 120
AI GRDGY+FDG RLRVELAHGG SSD G GG GG G G S
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGR----RSSD--DTRGSFNGGGRGGGRGRGDGGSRGPS 114
Query: 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYS 180
R SE+RV+V GLPSSASWQDLKDHMRK GDVCF++V RD+
Sbjct: 115 RRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDAR------------------- 155
Query: 181 GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSPSRSRSRS 231
GT GVVDYT EDMKYA++KLDDTEFRN ++ G + V+ YD SR SRS
Sbjct: 156 GTTGVVDYTCYEDMKYALKKLDDTEFRNAFSNGYVRVREYD---SRKDSRS 203
>sp|Q5ZML3|SRSF1_CHICK Serine/arginine-rich splicing factor 1 OS=Gallus gallus GN=SRSF1
PE=1 SV=3
Length = 257
Score = 167 bits (422), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 112/227 (49%), Positives = 131/227 (57%), Gaps = 37/227 (16%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IYVGNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVI 128
++DG RLRVE G G G GG G SR SEYRVI
Sbjct: 78 DYDGYRLRVEFPRSGRGTGRGGG-------------GGGGGGAPRGRYGPPSRRSEYRVI 124
Query: 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDY 188
V GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++
Sbjct: 125 VSGLPPSGSWQDLKDHMREAGDVCYADVFRD---------------------GT-GVVEF 162
Query: 189 TNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD--RSPSRSRSRSRS 233
EDM YA+RKLD+T+FR+ + D RSPS RSRSRS
Sbjct: 163 VRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSPSYGRSRSRS 209
>sp|Q9D0B0|SRSF9_MOUSE Serine/arginine-rich splicing factor 9 OS=Mus musculus GN=Srsf9
PE=1 SV=1
Length = 222
Score = 165 bits (417), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 95/200 (47%), Positives = 120/200 (60%), Gaps = 43/200 (21%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IYVGNLPSD+RE ++EDLFYKYGRI +IELK + FV FE+ RDAEDAI GR+GY
Sbjct: 17 IYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 76
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVI 128
++ CRLRVE P + RGG+ G G +R S++RV+
Sbjct: 77 DYGQCRLRVEF--------PRTYGGRGGWPRGARNGP-------------PTRRSDFRVL 115
Query: 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDY 188
V GLP S SWQDLKDHMR+AGDVC+A+V +D G+V+Y
Sbjct: 116 VSGLPPSGSWQDLKDHMREAGDVCYADVQKDG----------------------MGMVEY 153
Query: 189 TNPEDMKYAIRKLDDTEFRN 208
EDM+YA+RKLDDT+FR+
Sbjct: 154 LRKEDMEYALRKLDDTKFRS 173
>sp|Q5PPI1|SRSF9_RAT Serine/arginine-rich splicing factor 9 OS=Rattus norvegicus
GN=Srsf9 PE=1 SV=1
Length = 221
Score = 162 bits (411), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/202 (47%), Positives = 122/202 (60%), Gaps = 47/202 (23%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IYVGNLP+D+RE ++EDLFYKYGRI +IELK + FV FE+ RDAEDAI GR+GY
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 69 NFDGCRLRVEL--AHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYR 126
++ CRLRVE A+GG G P +S R G +R S++R
Sbjct: 76 DYGQCRLRVEFPRAYGGRGGWPRAS--RNG---------------------PPTRRSDFR 112
Query: 127 VIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVV 186
V+V GLP S SWQDLKDHMR+AGDVC+A+V +D G+V
Sbjct: 113 VLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG----------------------MGMV 150
Query: 187 DYTNPEDMKYAIRKLDDTEFRN 208
+Y EDM+YA+RKLDDT+FR+
Sbjct: 151 EYLRKEDMEYALRKLDDTKFRS 172
>sp|Q9NEW6|RSP3_CAEEL Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis
elegans GN=rsp-3 PE=1 SV=2
Length = 258
Score = 162 bits (409), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 103/206 (50%), Positives = 127/206 (61%), Gaps = 26/206 (12%)
Query: 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAI 62
G + +YVGNLP D+RE EVED+F+KYGRI +++K R P + FVEFE+ RDAEDA+
Sbjct: 5 GSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIK-SGRGPAFAFVEFEDHRDAEDAV 63
Query: 63 RGRDGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRH 122
R RDGY FDG R+RVE G RGP + GG G G G G R
Sbjct: 64 RARDGYEFDGRRIRVEFTRGVGPRGPGGRPLQ---DGGDHRGGDFRGGRGGGRGGGPQRR 120
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGT 182
+ YRVIV GLP + SWQDLKDHMR AGDVC+A+V+RD GT
Sbjct: 121 TGYRVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARD---------------------GT 159
Query: 183 YGVVDYTNPEDMKYAIRKLDDTEFRN 208
GVV++T ED+KYA+RKLDDT+FR+
Sbjct: 160 -GVVEFTRYEDVKYAVRKLDDTKFRS 184
>sp|Q6NYA0|SRS1B_DANRE Serine/arginine-rich splicing factor 1B OS=Danio rerio GN=srsf1b
PE=2 SV=1
Length = 245
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 102/200 (51%), Positives = 119/200 (59%), Gaps = 35/200 (17%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IYVGNLP DIR +VED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 76
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVI 128
++DG RLRVE G G G G G G SR SEYRVI
Sbjct: 77 DYDGYRLRVEFPRSGRGGGRGGGGGGGVGAPRGRYGPP-------------SRRSEYRVI 123
Query: 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDY 188
V GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++
Sbjct: 124 VSGLPPSGSWQDLKDHMREAGDVCYADVFRD---------------------GT-GVVEF 161
Query: 189 TNPEDMKYAIRKLDDTEFRN 208
EDM YA+RKLD+T+FR+
Sbjct: 162 VRKEDMTYAVRKLDNTKFRS 181
>sp|Q6DII2|SRSF1_XENTR Serine/arginine-rich splicing factor 1 OS=Xenopus tropicalis
GN=srsf1 PE=2 SV=1
Length = 267
Score = 159 bits (401), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 113/206 (54%), Positives = 133/206 (64%), Gaps = 28/206 (13%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IYVGNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGA-----GRFG-ISRH 122
++DG RLRVE G G G GG GGGG GG GG G G G GR+G SR
Sbjct: 78 DYDGYRLRVEFPRSGRGAGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGAPRGRYGPPSRR 137
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGT 182
SEYRV+V GLP S SWQDLKDHMR+AGDVC+A+V RD GT
Sbjct: 138 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCYADVFRD---------------------GT 176
Query: 183 YGVVDYTNPEDMKYAIRKLDDTEFRN 208
GVV++ EDM YA+RKLD+T+FR+
Sbjct: 177 -GVVEFVRKEDMTYAVRKLDNTKFRS 201
>sp|Q7SXP4|SRS1A_DANRE Serine/arginine-rich splicing factor 1A OS=Danio rerio GN=srsf1a
PE=2 SV=2
Length = 257
Score = 157 bits (396), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 108/200 (54%), Positives = 125/200 (62%), Gaps = 25/200 (12%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IYVGNLP DIR +VED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ RDGY
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGY 76
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVI 128
++DG RLRVE G G GG GGGG GG GG G SR SEYRVI
Sbjct: 77 DYDGYRLRVEFPRSGRG---MGRGGFGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVI 133
Query: 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDY 188
V GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++
Sbjct: 134 VSGLPPSGSWQDLKDHMREAGDVCYADVFRD---------------------GT-GVVEF 171
Query: 189 TNPEDMKYAIRKLDDTEFRN 208
EDM YA+RKLD+T+FR+
Sbjct: 172 VRKEDMTYAVRKLDNTKFRS 191
>sp|Q5R7H2|SRSF1_PONAB Serine/arginine-rich splicing factor 1 OS=Pongo abelii GN=SRSF1
PE=2 SV=3
Length = 248
Score = 154 bits (390), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 99/199 (49%), Positives = 117/199 (58%), Gaps = 35/199 (17%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IYVGNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVI 128
++DG RLRVE G G G GG G SR SE RV+
Sbjct: 78 DYDGYRLRVEFPRSGRGTGRGGG-------------GGGGGGAPRGRYGPPSRRSENRVV 124
Query: 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDY 188
V GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++
Sbjct: 125 VSGLPPSGSWQDLKDHMREAGDVCYADVYRD---------------------GT-GVVEF 162
Query: 189 TNPEDMKYAIRKLDDTEFR 207
EDM YA+RKLD+T+FR
Sbjct: 163 VRKEDMTYAVRKLDNTKFR 181
>sp|Q3YLA6|SRSF1_PIG Serine/arginine-rich splicing factor 1 OS=Sus scrofa GN=SRSF1 PE=2
SV=3
Length = 248
Score = 154 bits (390), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 99/199 (49%), Positives = 117/199 (58%), Gaps = 35/199 (17%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IYVGNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVI 128
++DG RLRVE G G G GG G SR SE RV+
Sbjct: 78 DYDGYRLRVEFPRSGRGTGRGGG-------------GGGGGGAPRGRYGPPSRRSENRVV 124
Query: 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDY 188
V GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++
Sbjct: 125 VSGLPPSGSWQDLKDHMREAGDVCYADVYRD---------------------GT-GVVEF 162
Query: 189 TNPEDMKYAIRKLDDTEFR 207
EDM YA+RKLD+T+FR
Sbjct: 163 VRKEDMTYAVRKLDNTKFR 181
>sp|Q6PDM2|SRSF1_MOUSE Serine/arginine-rich splicing factor 1 OS=Mus musculus GN=Srsf1
PE=1 SV=3
Length = 248
Score = 154 bits (390), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 99/199 (49%), Positives = 117/199 (58%), Gaps = 35/199 (17%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IYVGNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVI 128
++DG RLRVE G G G GG G SR SE RV+
Sbjct: 78 DYDGYRLRVEFPRSGRGTGRGGG-------------GGGGGGAPRGRYGPPSRRSENRVV 124
Query: 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDY 188
V GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++
Sbjct: 125 VSGLPPSGSWQDLKDHMREAGDVCYADVYRD---------------------GT-GVVEF 162
Query: 189 TNPEDMKYAIRKLDDTEFR 207
EDM YA+RKLD+T+FR
Sbjct: 163 VRKEDMTYAVRKLDNTKFR 181
>sp|Q07955|SRSF1_HUMAN Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1
PE=1 SV=2
Length = 248
Score = 154 bits (390), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 99/199 (49%), Positives = 117/199 (58%), Gaps = 35/199 (17%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IYVGNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVI 128
++DG RLRVE G G G GG G SR SE RV+
Sbjct: 78 DYDGYRLRVEFPRSGRGTGRGGG-------------GGGGGGAPRGRYGPPSRRSENRVV 124
Query: 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDY 188
V GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++
Sbjct: 125 VSGLPPSGSWQDLKDHMREAGDVCYADVYRD---------------------GT-GVVEF 162
Query: 189 TNPEDMKYAIRKLDDTEFR 207
EDM YA+RKLD+T+FR
Sbjct: 163 VRKEDMTYAVRKLDNTKFR 181
>sp|Q0VCY7|SRSF1_BOVIN Serine/arginine-rich splicing factor 1 OS=Bos taurus GN=SRSF1 PE=2
SV=1
Length = 248
Score = 154 bits (390), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 99/199 (49%), Positives = 117/199 (58%), Gaps = 35/199 (17%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IYVGNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVI 128
++DG RLRVE G G G GG G SR SE RV+
Sbjct: 78 DYDGYRLRVEFPRSGRGTGRGGG-------------GGGGGGAPRGRYGPPSRRSENRVV 124
Query: 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDY 188
V GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++
Sbjct: 125 VSGLPPSGSWQDLKDHMREAGDVCYADVYRD---------------------GT-GVVEF 162
Query: 189 TNPEDMKYAIRKLDDTEFR 207
EDM YA+RKLD+T+FR
Sbjct: 163 VRKEDMTYAVRKLDNTKFR 181
>sp|Q13242|SRSF9_HUMAN Serine/arginine-rich splicing factor 9 OS=Homo sapiens GN=SRSF9
PE=1 SV=1
Length = 221
Score = 152 bits (385), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/200 (46%), Positives = 117/200 (58%), Gaps = 43/200 (21%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IYVGNLP+D+RE ++EDLFYKYGRI +IELK + FV FE+ RDAEDAI GR+GY
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVI 128
++ CRLRVE P + G G G +R S++RV+
Sbjct: 76 DYGQCRLRVEF--------PRTY-------------GGRGGWPRGGRNGPPTRRSDFRVL 114
Query: 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDY 188
V GLP S SWQDLKDHMR+AGDVC+A+V +D G+V+Y
Sbjct: 115 VSGLPPSGSWQDLKDHMREAGDVCYADVQKDG----------------------VGMVEY 152
Query: 189 TNPEDMKYAIRKLDDTEFRN 208
EDM+YA+RKLDDT+FR+
Sbjct: 153 LRKEDMEYALRKLDDTKFRS 172
>sp|Q8VE97|SRSF4_MOUSE Serine/arginine-rich splicing factor 4 OS=Mus musculus GN=Srsf4
PE=2 SV=1
Length = 489
Score = 107 bits (268), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 104/198 (52%), Gaps = 36/198 (18%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+Y+G L RE +VE F YG+IL+++LK Y FVEF++ RDA+DA+ +G
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKN-----GYGFVEFDDLRDADDAVYELNGK 58
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVI 128
+ G R+ VE A RGP RR G G G G G +G ++G +EYR+I
Sbjct: 59 DLCGERVIVEHA-----RGP----RRDGSYGSGRSGYGYRRSGRD--KYGPPTRTEYRLI 107
Query: 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDY 188
V L S SWQDLKD+MR+AG+V +A+ + + GV+++
Sbjct: 108 VENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNE--------------------GVIEF 147
Query: 189 TNPEDMKYAIRKLDDTEF 206
+ DMK A+ KLD TE
Sbjct: 148 VSYSDMKRALEKLDGTEV 165
>sp|Q08170|SRSF4_HUMAN Serine/arginine-rich splicing factor 4 OS=Homo sapiens GN=SRSF4
PE=1 SV=2
Length = 494
Score = 105 bits (263), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 105/198 (53%), Gaps = 36/198 (18%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+Y+G L RE +VE F YG+IL+++LK Y FVEF++ RDA+DA+ +G
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLK-----NGYGFVEFDDLRDADDAVYELNGK 58
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVI 128
+ G R+ VE A RGP R G YG +G +G +G ++G +EYR+I
Sbjct: 59 DLCGERVIVEHA-----RGPR---RDGSYG---SGRSGYGYRRSGRDKYGPPTRTEYRLI 107
Query: 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDY 188
V L S SWQDLKD+MR+AG+V +A+ + + GV+++
Sbjct: 108 VENLSSRCSWQDLKDYMRQAGEVTYADAHKGRK--------------------NEGVIEF 147
Query: 189 TNPEDMKYAIRKLDDTEF 206
+ DMK A+ KLD TE
Sbjct: 148 VSYSDMKRALEKLDGTEV 165
>sp|P26686|SRR55_DROME Serine-arginine protein 55 OS=Drosophila melanogaster GN=B52 PE=1
SV=4
Length = 376
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 100/201 (49%), Gaps = 28/201 (13%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVG LP +RE ++E F YGR DI +K Y FVEFE+ RDA+DA+ +G
Sbjct: 6 VYVGGLPYGVRERDLERFFKGYGRTRDILIK-----NGYGFVEFEDYRDADDAVYELNGK 60
Query: 69 NFDGCRLRVELAHG---GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEY 125
G R+ VE A G GS R G GGGG + R+G +EY
Sbjct: 61 ELLGERVVVEPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSRYGPPLRTEY 120
Query: 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGV 185
R+IV L S SWQDLKD+MR+AG+V +A+ + GV
Sbjct: 121 RLIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNE--------------------GV 160
Query: 186 VDYTNPEDMKYAIRKLDDTEF 206
V++ + DMK AI KLDDTE
Sbjct: 161 VEFASLSDMKTAIEKLDDTEL 181
>sp|Q13247|SRSF6_HUMAN Serine/arginine-rich splicing factor 6 OS=Homo sapiens GN=SRSF6
PE=1 SV=2
Length = 344
Score = 98.2 bits (243), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 103/198 (52%), Gaps = 30/198 (15%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+Y+G L ++RE +++ F YGR+L+++LK Y FVEFE++RDA+DA+ +G
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLK-----NGYGFVEFEDSRDADDAVYELNGK 58
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVI 128
G R+ VE A RGP YG GG + +G ++G +EYR+I
Sbjct: 59 ELCGERVIVEHA-----RGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLI 113
Query: 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDY 188
V L S SWQDLKD MR+AG+V +A+ ++ GV+++
Sbjct: 114 VENLSSRCSWQDLKDFMRQAGEVTYADAHKE--------------------RTNEGVIEF 153
Query: 189 TNPEDMKYAIRKLDDTEF 206
+ DMK A+ KLD TE
Sbjct: 154 RSYSDMKRALDKLDGTEI 171
>sp|Q3B7L6|SRSF6_BOVIN Serine/arginine-rich splicing factor 6 OS=Bos taurus GN=SRSF6 PE=2
SV=1
Length = 345
Score = 95.5 bits (236), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 102/198 (51%), Gaps = 30/198 (15%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+Y+G L ++RE +++ F YGR+L I+LK Y FVEFE++RDA+DA+ +G
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLGIDLK-----NGYGFVEFEDSRDADDAVYELNGK 58
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVI 128
G R+ VE A RGP YG GG + +G ++G +E+R+I
Sbjct: 59 ELCGERVIVEHA-----RGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEFRLI 113
Query: 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDY 188
V L S SWQDLKD MR+AG+V +A+ ++ GV+++
Sbjct: 114 VENLSSRCSWQDLKDFMRQAGEVTYADAHKE--------------------RTNEGVIEF 153
Query: 189 TNPEDMKYAIRKLDDTEF 206
+ DMK A+ KLD TE
Sbjct: 154 RSYSDMKRALDKLDGTEI 171
>sp|Q09167|SRSF5_RAT Serine/arginine-rich splicing factor 5 OS=Rattus norvegicus
GN=Srsf5 PE=2 SV=1
Length = 269
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 90/214 (42%), Gaps = 66/214 (30%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++G L RE +VE F YGRI DI+LK + FVEFE+ RDA+DA+ DG
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGK 60
Query: 69 NFDGCRLRVELAHGG----------------SGRGPSSSDRRGGYGGGGAGGAGGAGAGA 112
C RV + H S R P + DRR
Sbjct: 61 EL--CSERVTIEHARARSRGGRGRGRYSDRFSSRRPRN-DRRNA---------------- 101
Query: 113 GAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLT 172
+E R+IV L S SWQDLKD MR+AG+V FA+ R P +
Sbjct: 102 ------PPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHR-------PKL---- 144
Query: 173 LNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEF 206
GVV++ + D+K AI KL E
Sbjct: 145 ---------NEGVVEFASYGDLKNAIEKLSGKEI 169
>sp|O35326|SRSF5_MOUSE Serine/arginine-rich splicing factor 5 OS=Mus musculus GN=Srsf5
PE=1 SV=2
Length = 269
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 90/214 (42%), Gaps = 66/214 (30%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++G L RE +VE F YGRI DI+LK + FVEFE+ RDA+DA+ DG
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGK 60
Query: 69 NFDGCRLRVELAHGG----------------SGRGPSSSDRRGGYGGGGAGGAGGAGAGA 112
C RV + H S R P + DRR
Sbjct: 61 EL--CSERVTIEHARARSRGGRGRGRYSDRFSSRRPRN-DRRNA---------------- 101
Query: 113 GAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLT 172
+E R+IV L S SWQDLKD MR+AG+V FA+ R P +
Sbjct: 102 ------PPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHR-------PKL---- 144
Query: 173 LNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEF 206
GVV++ + D+K AI KL E
Sbjct: 145 ---------NEGVVEFASYGDLKNAIEKLSGKEI 169
>sp|Q13243|SRSF5_HUMAN Serine/arginine-rich splicing factor 5 OS=Homo sapiens GN=SRSF5
PE=1 SV=1
Length = 272
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 90/214 (42%), Gaps = 66/214 (30%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++G L RE +VE F YGRI DI+LK + FVEFE+ RDA+DA+ DG
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGK 60
Query: 69 NFDGCRLRVELAHGG----------------SGRGPSSSDRRGGYGGGGAGGAGGAGAGA 112
C RV + H S R P + DRR
Sbjct: 61 EL--CSERVTIEHARARSRGGRGRGRYSDRFSSRRPRN-DRRNA---------------- 101
Query: 113 GAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLT 172
+E R+IV L S SWQDLKD MR+AG+V FA+ R P +
Sbjct: 102 ------PPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHR-------PKL---- 144
Query: 173 LNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEF 206
GVV++ + D+K AI KL E
Sbjct: 145 ---------NEGVVEFASYGDLKNAIEKLSGKEI 169
>sp|P78814|SRP2_SCHPO Pre-mRNA-splicing factor srp2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=srp2 PE=1 SV=2
Length = 365
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 84/194 (43%), Gaps = 44/194 (22%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
++VG +P ++ D F YG+ILD +L + FVE E+ARDA D + G
Sbjct: 6 LFVGRIPPQATREDMMDFFKGYGQILDCKLMN-----GFGFVEVEDARDARDIVNDFQGK 60
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVI 128
F G R+ VE A G + A ++ R + +R+I
Sbjct: 61 EFMGSRIVVEPARGERR-------------------RRENFRESAASKYPRPRRTGFRLI 101
Query: 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDY 188
V L SWQDLKD MRKAG+ F + R++ G GVV++
Sbjct: 102 VENLSEDVSWQDLKDVMRKAGEPTFTDAHRENPGA--------------------GVVEF 141
Query: 189 TNPEDMKYAIRKLD 202
+ EDM+ A+ L+
Sbjct: 142 STEEDMRNALTSLN 155
>sp|Q18409|RSP6_CAEEL Probable splicing factor, arginine/serine-rich 6
OS=Caenorhabditis elegans GN=rsp-6 PE=3 SV=1
Length = 179
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 49/72 (68%), Gaps = 2/72 (2%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVG LPSD E+E++F ++GRI ++ + RPP + FVE+++ RDAEDA+R DG
Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIR--KVWVARRPPGFAFVEYDDVRDAEDAVRALDGS 62
Query: 69 NFDGCRLRVELA 80
G R RVEL+
Sbjct: 63 RICGVRARVELS 74
>sp|Q23120|RSP2_CAEEL Probable splicing factor, arginine/serine-rich 2 OS=Caenorhabditis
elegans GN=rsp-2 PE=3 SV=1
Length = 281
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 8/141 (5%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+Y+G LP+ + +VE F YG++ D+ +K + FV+F++ RDA+DA+ +G
Sbjct: 4 VYIGRLPNRASDRDVEHFFRGYGKLSDVIMK-----NGFGFVDFQDQRDADDAVHDLNGK 58
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVI 128
G R+ +E G + +R G G G + R+ + +R++
Sbjct: 59 ELCGERVILEFPRRKVG---YNEERSGSGFRGREPTFRKGGERQFSNRYSRPCSTRFRLV 115
Query: 129 VRGLPSSASWQDLKDHMRKAG 149
+ L + SWQD+KDH+RK G
Sbjct: 116 IDNLSTRYSWQDIKDHIRKLG 136
>sp|Q23121|RSP1_CAEEL Probable splicing factor, arginine/serine-rich 1 OS=Caenorhabditis
elegans GN=rsp-1 PE=3 SV=1
Length = 312
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 89/212 (41%), Gaps = 40/212 (18%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IY+G L S + E ++E F YG+I D+ LK + FVEF++ RDAEDA+ +G
Sbjct: 5 IYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKN-----GFGFVEFDDKRDAEDAVHDLNGK 59
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGA-------------GAGAGAG 115
G R+ ++ + G G GG GG G G
Sbjct: 60 ELGGERVILDYSKPRGGGGDRGGFGGGGRGGARVSSYSGGGGGGRDRFDRYDRGPPRRES 119
Query: 116 RFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDSEGWQSPAMILLTLN 174
R+G + +RV+V L S SWQDLKD +R+ G + +A E + P LL
Sbjct: 120 RYGRPYSTRHRVVVENLSSRISWQDLKDQVRRQGVEPTYA------EAHKRPNEALLC-- 171
Query: 175 FLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEF 206
+ P D+K I K D +
Sbjct: 172 -------------FATPSDLKRCIEKCDGMDL 190
>sp|Q8VYA5|RSZ33_ARATH Serine/arginine-rich splicing factor RS2Z33 OS=Arabidopsis thaliana
GN=RS2Z33 PE=1 SV=1
Length = 290
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVG L S R ++E LF +YGR+ D+++K Y FVEF + RDA+DA DG
Sbjct: 13 LYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD-----YAFVEFGDPRDADDARHYLDGR 67
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGG 101
+FDG R+ VE + G RG D RG G G
Sbjct: 68 DFDGSRITVEFSRGAP-RGSRDFDSRGPPPGAG 99
>sp|Q02427|RBP1_DROME RNA-binding protein 1 OS=Drosophila melanogaster GN=Rbp1 PE=2
SV=3
Length = 144
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVGNL S ++E+E F KYG + ++ + PP + FVEFE+ RDAEDA R DG
Sbjct: 13 VYVGNLGSSASKHEIEGAFAKYGPLRNV--WVARNPPGFAFVEFEDRRDAEDATRALDGT 70
Query: 69 NFDGCRLRVEL 79
G R+RVE+
Sbjct: 71 RCCGTRIRVEM 81
>sp|P84104|SRSF3_MOUSE Serine/arginine-rich splicing factor 3 OS=Mus musculus GN=Srsf3
PE=1 SV=1
Length = 164
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 5/86 (5%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVGNL ++ + E+E F YG + + + PP + FVEFE+ RDA DA+R DG
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVWVAR--NPPGFAFVEFEDPRDAADAVRELDGR 69
Query: 69 NFDGCRLRVELAHGGS---GRGPSSS 91
GCR+RVEL++G RGP S
Sbjct: 70 TLCGCRVRVELSNGEKRSRNRGPPPS 95
>sp|P84103|SRSF3_HUMAN Serine/arginine-rich splicing factor 3 OS=Homo sapiens GN=SRSF3
PE=1 SV=1
Length = 164
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 5/86 (5%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVGNL ++ + E+E F YG + + + PP + FVEFE+ RDA DA+R DG
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVWVAR--NPPGFAFVEFEDPRDAADAVRELDGR 69
Query: 69 NFDGCRLRVELAHGGS---GRGPSSS 91
GCR+RVEL++G RGP S
Sbjct: 70 TLCGCRVRVELSNGEKRSRNRGPPPS 95
>sp|Q3SZR8|SRSF3_BOVIN Serine/arginine-rich splicing factor 3 OS=Bos taurus GN=SRSF3
PE=2 SV=1
Length = 164
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 5/86 (5%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVGNL ++ + E+E F YG + + + PP + FVEFE+ RDA DA+R DG
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVWVAR--NPPGFAFVEFEDPRDAADAVRELDGR 69
Query: 69 NFDGCRLRVELAHGGS---GRGPSSS 91
GCR+RVEL++G RGP S
Sbjct: 70 TLCGCRVRVELSNGEKRSRNRGPPPS 95
>sp|P92964|RSP31_ARATH Arginine/serine-rich-splicing factor RSP31 OS=Arabidopsis
thaliana GN=RSP31 PE=1 SV=2
Length = 264
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 49/82 (59%), Gaps = 7/82 (8%)
Query: 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66
R ++VGN + R+ ++E LF KYGR+ +++K Y FV FE+ RDAEDAIR D
Sbjct: 2 RPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKS-----GYAFVYFEDERDAEDAIRKLD 56
Query: 67 GYNF--DGCRLRVELAHGGSGR 86
+ F + RL VE A G GR
Sbjct: 57 NFPFGYEKRRLSVEWAKGERGR 78
>sp|Q9FYB7|RSZ32_ARATH Serine/arginine-rich splicing factor RS2Z32 OS=Arabidopsis
thaliana GN=RS2Z32 PE=1 SV=1
Length = 284
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 46/74 (62%), Gaps = 5/74 (6%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVG L S R ++E LF +YGR+ D+++K Y FVEF + RDA+DA DG
Sbjct: 13 LYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD-----YAFVEFSDPRDADDARYYLDGR 67
Query: 69 NFDGCRLRVELAHG 82
+FDG R+ VE + G
Sbjct: 68 DFDGSRITVEASRG 81
>sp|Q8BL97|SRSF7_MOUSE Serine/arginine-rich splicing factor 7 OS=Mus musculus GN=Srsf7
PE=1 SV=1
Length = 267
Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVGNL + + E+E F YG + + I PP + FVEFE+ RDAEDA+RG DG
Sbjct: 42 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDGK 99
Query: 69 NFDGCRLRVELAHG 82
G R+RVEL+ G
Sbjct: 100 VICGSRVRVELSTG 113
>sp|Q10021|RSP5_CAEEL Probable splicing factor, arginine/serine-rich 5
OS=Caenorhabditis elegans GN=rsp-5 PE=3 SV=3
Length = 208
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 11/89 (12%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+Y+G +P + RE +VE YG+I +I +K + FV+FE++RDAEDA DG
Sbjct: 4 LYLGKIPYNARERDVERFLKGYGKINNISMKY-----GFAFVDFEDSRDAEDACHDLDGK 58
Query: 69 NFDG--CRLRVELAHGGSGRGPSSSDRRG 95
+G RL VE+A G P +DR G
Sbjct: 59 TMEGSSMRLVVEMARG----KPRGNDRHG 83
>sp|Q3T106|SRSF7_BOVIN Serine/arginine-rich splicing factor 7 OS=Bos taurus GN=SRSF7
PE=2 SV=1
Length = 235
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVGNL + + E+E F YG + + I PP + FVEFE+ RDAEDA+RG DG
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDGK 70
Query: 69 NFDGCRLRVELAHG 82
G R+RVEL+ G
Sbjct: 71 VICGSRVRVELSTG 84
>sp|Q16629|SRSF7_HUMAN Serine/arginine-rich splicing factor 7 OS=Homo sapiens GN=SRSF7
PE=1 SV=1
Length = 238
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVGNL + + E+E F YG + + I PP + FVEFE+ RDAEDA+RG DG
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDGK 70
Query: 69 NFDGCRLRVELAHG 82
G R+RVEL+ G
Sbjct: 71 VICGSRVRVELSTG 84
>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2
SV=1
Length = 172
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 9/97 (9%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
++VG L D E +E +F KYG+I ++ + + R + FV FEN DA+DA+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 66 DGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGA 102
+G + DG ++RV+ A G SS +R GY GG A
Sbjct: 68 NGKSVDGRQIRVDQA------GKSSDNRSRGYRGGSA 98
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1
SV=1
Length = 172
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 9/97 (9%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
++VG L D E +E +F KYG+I ++ + + R + FV FEN DA+DA+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 66 DGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGA 102
+G + DG ++RV+ A G SS +R GY GG A
Sbjct: 68 NGKSVDGRQIRVDQA------GKSSDNRSRGYRGGSA 98
>sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp
PE=2 SV=1
Length = 172
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 9/97 (9%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
++VG L D E +E +F KYG+I ++ + + R + FV FEN DA+DA+
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 66 DGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGA 102
+G + DG ++RV+ A G SS +R GY GG A
Sbjct: 68 NGKSVDGRQIRVDQA------GKSSDNRSRGYRGGSA 98
>sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1
SV=1
Length = 172
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 9/97 (9%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
++VG L D E +E +F KYG+I ++ + + R + FV FEN DA+DA+
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 66 DGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGA 102
+G + DG ++RV+ A G SS +R GY GG A
Sbjct: 68 NGKSVDGRQIRVDQA------GKSSDNRSRGYRGGSA 98
>sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP
PE=2 SV=1
Length = 172
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 9/97 (9%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
++VG L D E +E +F KYG+I ++ + + R + FV FEN DA+DA+
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 66 DGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGA 102
+G + DG ++RV+ A G SS +R GY GG A
Sbjct: 68 NGKSVDGRQIRVDQA------GKSSDNRSRGYRGGSA 98
>sp|P92965|RSP40_ARATH Arginine/serine-rich-splicing factor RSP40 OS=Arabidopsis
thaliana GN=RSP40 PE=1 SV=2
Length = 350
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Query: 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66
+ ++ GN D RE ++E LF KYG++ +++K + FV E+ RDAEDAIR D
Sbjct: 2 KPVFCGNFEYDAREGDLERLFRKYGKVERVDMKA-----GFAFVYMEDERDAEDAIRALD 56
Query: 67 GYNF--DGCRLRVELAHGGSG 85
+ F G RLRVE G
Sbjct: 57 RFEFGRKGRRLRVEWTKSERG 77
>sp|Q6K9C3|RZP23_ORYSJ Serine/arginine-rich splicing factor RSZ23 OS=Oryza sativa subsp.
japonica GN=RSZ23 PE=2 SV=1
Length = 200
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 10/89 (11%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVGNL + E+ED F +G + + + +PP + F++F++ RDAEDAIR DG
Sbjct: 4 VYVGNLDPRVTAREIEDEFRVFGVLRSVWVAR--KPPGFAFIDFDDRRDAEDAIRDLDGK 61
Query: 69 NFDGCRLRVELA-HGGSGRGPSSSDRRGG 96
N RVEL+ GSGRG DR GG
Sbjct: 62 NG----WRVELSTKAGSGRG---RDRSGG 83
>sp|Q24491|RX21_DROME RNA-binding protein Rsf1 OS=Drosophila melanogaster GN=Rsf1 PE=1
SV=1
Length = 197
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVGNL +++ ++E F KYG++ + I PP + FVEFE+ DAE A +G
Sbjct: 9 VYVGNLTDKVKKDDLEGEFTKYGKLNSV--WIAFNPPGFAFVEFEHRDDAEKACDILNGS 66
Query: 69 NFDGCRLRVELA 80
G +LRVE++
Sbjct: 67 ELLGSQLRVEIS 78
>sp|O81126|RZP22_ARATH Serine/arginine-rich splicing factor RSZ22 OS=Arabidopsis
thaliana GN=RSZ22 PE=1 SV=1
Length = 200
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVGNL + E E+ED F +G + + + RPP Y F++FE+ RDA DAIR DG
Sbjct: 4 VYVGNLDPRVTERELEDEFRAFGVVRSVWVAR--RPPGYAFLDFEDPRDARDAIRALDGK 61
Query: 69 NFDGCRLRVELAHG 82
N RVE +H
Sbjct: 62 NG----WRVEQSHN 71
>sp|Q9SJA6|RZ22A_ARATH Serine/arginine-rich splicing factor RSZ22A OS=Arabidopsis
thaliana GN=RSZ22A PE=1 SV=1
Length = 196
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 6/74 (8%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVGNL + E E+ED F +G I + + RPP Y F++FE++RDA DAIR DG
Sbjct: 4 VYVGNLDPRVTERELEDEFRSFGVIRSV--WVARRPPGYAFLDFEDSRDARDAIREVDGK 61
Query: 69 NFDGCRLRVELAHG 82
N RVE +H
Sbjct: 62 NG----WRVEQSHN 71
>sp|Q6K4N0|RSZ21_ORYSJ Serine/arginine-rich splicing factor RSZ21 OS=Oryza sativa subsp.
japonica GN=RSZP21 PE=2 SV=1
Length = 185
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVGNL + E+ED F +G + + + +PP + F++F++ RDAEDA+R DG
Sbjct: 4 LYVGNLDPRVTSGELEDEFRVFGVLRSVW--VARKPPGFAFIDFDDKRDAEDALRDLDGK 61
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGG 96
N RVEL+ S RG DR GG
Sbjct: 62 NG----WRVELSRNSSSRG--GRDRHGG 83
>sp|P92966|RSP41_ARATH Arginine/serine-rich-splicing factor RSP41 OS=Arabidopsis
thaliana GN=RSP41 PE=1 SV=2
Length = 356
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 7/74 (9%)
Query: 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66
+ ++ GN D RE ++E LF KYG++ +++K + FV E+ RDAEDAIR D
Sbjct: 2 KPVFCGNFEYDARESDLERLFRKYGKVERVDMKA-----GFAFVYMEDERDAEDAIRALD 56
Query: 67 GYNF--DGCRLRVE 78
+ + G RLRVE
Sbjct: 57 RFEYGRTGRRLRVE 70
>sp|Q9P3U1|YKX5_SCHPO Uncharacterized RNA-binding protein C328.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC328.05 PE=4 SV=3
Length = 464
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 89/218 (40%), Gaps = 41/218 (18%)
Query: 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIE-LKIPPRPPCYC-FVEFENARDAEDAIRG 64
R +YVGNL +R +E+++ + G +L+ E L +P C +E+ A +A AI+
Sbjct: 77 RRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKT 136
Query: 65 RDGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSE 124
F G + + DR G + A G +
Sbjct: 137 LSNQKFMGRLVYIR------------EDREQN------ARFGSSSVSPSASSNGKDSEPD 178
Query: 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYG 184
++ V LP + WQDLKD R+AG V A++ + EG S G
Sbjct: 179 RQLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQEG----------------RSRGIG 222
Query: 185 VVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 222
+V ++ ++ +AI+ L +T+F GR R DR
Sbjct: 223 IVVMSSMKEAMHAIQMLHNTDF-----MGRTLEVRLDR 255
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP--RPPCYCFVEFENARDAED 60
G S IYVGNLP + + DLF G ++ + P R + V+FEN DA
Sbjct: 306 GPCSDCIYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAAS 365
Query: 61 AIRGRDGYNFDGCRLRVELAH 81
+I +GY + G L++ AH
Sbjct: 366 SIEKLNGYRYGGRPLQLSYAH 386
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 21/101 (20%)
Query: 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSG 181
E RV V L W +LK+ M + G+V E+ LN S
Sbjct: 74 QQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEI----------------LNLPNGLSK 117
Query: 182 TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 222
+++Y+ E+ + AI+ L + +F GR+ R DR
Sbjct: 118 GCAIIEYSTAEEARTAIKTLSNQKF-----MGRLVYIREDR 153
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,748,856
Number of Sequences: 539616
Number of extensions: 5651806
Number of successful extensions: 104669
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1510
Number of HSP's successfully gapped in prelim test: 900
Number of HSP's that attempted gapping in prelim test: 42945
Number of HSP's gapped (non-prelim): 31639
length of query: 289
length of database: 191,569,459
effective HSP length: 116
effective length of query: 173
effective length of database: 128,974,003
effective search space: 22312502519
effective search space used: 22312502519
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)