Query 022981
Match_columns 289
No_of_seqs 266 out of 2684
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 07:34:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022981.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022981hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 1.4E-32 3.1E-37 242.7 20.9 168 4-223 105-275 (346)
2 KOG0105 Alternative splicing f 100.0 2.4E-31 5.3E-36 205.4 21.2 193 1-224 1-193 (241)
3 TIGR01645 half-pint poly-U bin 100.0 2.6E-30 5.6E-35 239.9 20.9 177 5-224 106-285 (612)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.3E-29 2.8E-34 227.5 20.7 167 4-222 1-170 (352)
5 TIGR01622 SF-CC1 splicing fact 100.0 7.5E-29 1.6E-33 229.9 21.1 176 4-222 87-265 (457)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.4E-28 7.3E-33 218.3 23.7 200 5-223 88-349 (352)
7 TIGR01628 PABP-1234 polyadenyl 100.0 2.9E-27 6.2E-32 224.5 20.3 162 7-221 1-165 (562)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.7E-26 3.7E-31 214.6 24.5 195 4-221 273-478 (481)
9 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1E-26 2.3E-31 218.4 22.5 189 4-221 173-373 (509)
10 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 2.7E-26 5.9E-31 213.2 21.8 170 5-221 1-172 (481)
11 TIGR01648 hnRNP-R-Q heterogene 99.9 5.6E-26 1.2E-30 210.8 21.4 192 6-224 58-308 (578)
12 TIGR01628 PABP-1234 polyadenyl 99.9 5.8E-26 1.3E-30 215.6 20.1 181 5-222 177-363 (562)
13 KOG0148 Apoptosis-promoting RN 99.9 3.3E-26 7.2E-31 186.8 14.7 171 7-221 63-236 (321)
14 KOG0145 RNA-binding protein EL 99.9 3.4E-26 7.3E-31 185.8 14.4 168 4-223 39-209 (360)
15 KOG0131 Splicing factor 3b, su 99.9 5.6E-26 1.2E-30 175.4 12.8 167 4-223 7-177 (203)
16 TIGR01642 U2AF_lg U2 snRNP aux 99.9 4.7E-25 1E-29 207.3 21.9 195 4-221 293-500 (509)
17 KOG0144 RNA-binding protein CU 99.9 1.6E-25 3.5E-30 193.4 12.7 171 5-226 33-209 (510)
18 TIGR01622 SF-CC1 splicing fact 99.9 6.8E-24 1.5E-28 196.8 22.8 193 6-221 186-446 (457)
19 KOG0145 RNA-binding protein EL 99.9 1.5E-24 3.3E-29 176.2 15.0 196 6-220 127-355 (360)
20 KOG0127 Nucleolar protein fibr 99.9 2.4E-24 5.2E-29 190.9 16.1 187 6-221 5-194 (678)
21 KOG0117 Heterogeneous nuclear 99.9 3.6E-24 7.9E-29 185.8 16.9 160 6-222 83-247 (506)
22 KOG0109 RNA-binding protein LA 99.9 7E-25 1.5E-29 180.8 11.2 146 7-221 3-148 (346)
23 KOG0127 Nucleolar protein fibr 99.9 2.5E-23 5.4E-28 184.5 19.7 198 5-221 116-376 (678)
24 KOG0117 Heterogeneous nuclear 99.9 3.2E-23 7E-28 180.0 15.4 164 4-224 162-332 (506)
25 KOG0124 Polypyrimidine tract-b 99.9 1.2E-23 2.6E-28 178.3 11.6 175 7-224 114-291 (544)
26 KOG0106 Alternative splicing f 99.9 2.6E-23 5.7E-28 168.5 11.1 163 7-217 2-165 (216)
27 KOG0110 RNA-binding protein (R 99.9 3.6E-22 7.8E-27 182.3 13.6 169 9-222 518-692 (725)
28 KOG0123 Polyadenylate-binding 99.9 3.3E-21 7.1E-26 171.5 16.3 152 7-223 2-153 (369)
29 KOG0107 Alternative splicing f 99.9 1.3E-20 2.7E-25 145.0 13.5 79 123-225 9-87 (195)
30 KOG0123 Polyadenylate-binding 99.8 2.5E-20 5.3E-25 165.9 15.0 171 4-222 74-245 (369)
31 KOG0148 Apoptosis-promoting RN 99.8 1.1E-20 2.5E-25 154.5 11.2 143 1-224 1-143 (321)
32 PLN03134 glycine-rich RNA-bind 99.8 2.3E-19 5E-24 139.7 14.8 80 4-83 32-114 (144)
33 TIGR01645 half-pint poly-U bin 99.8 1.3E-18 2.7E-23 162.3 22.1 79 5-83 203-284 (612)
34 KOG0144 RNA-binding protein CU 99.8 9.2E-20 2E-24 157.9 13.2 80 5-84 123-207 (510)
35 KOG4206 Spliceosomal protein s 99.8 1.2E-18 2.6E-23 140.1 18.3 196 1-220 4-219 (221)
36 KOG0107 Alternative splicing f 99.8 7E-19 1.5E-23 135.4 16.3 78 4-83 8-85 (195)
37 KOG4205 RNA-binding protein mu 99.8 1.2E-19 2.6E-24 156.3 12.0 172 1-222 1-175 (311)
38 KOG0147 Transcriptional coacti 99.8 1.6E-20 3.4E-25 167.4 5.3 177 4-221 177-356 (549)
39 KOG0146 RNA-binding protein ET 99.8 7.5E-19 1.6E-23 143.7 14.0 198 5-221 18-363 (371)
40 KOG4207 Predicted splicing fac 99.8 1.8E-18 3.9E-23 136.5 13.9 80 4-83 11-93 (256)
41 KOG0147 Transcriptional coacti 99.8 2.6E-18 5.7E-23 153.4 14.5 190 7-220 279-525 (549)
42 KOG4207 Predicted splicing fac 99.8 1.9E-18 4E-23 136.4 11.9 85 118-221 7-91 (256)
43 KOG1457 RNA binding protein (c 99.8 4.6E-17 1E-21 130.0 15.9 184 5-207 33-274 (284)
44 KOG1548 Transcription elongati 99.7 1.9E-16 4E-21 134.1 16.6 197 4-224 132-353 (382)
45 KOG4212 RNA-binding protein hn 99.7 4.9E-16 1.1E-20 135.1 18.6 195 5-219 43-290 (608)
46 KOG0113 U1 small nuclear ribon 99.7 1.5E-16 3.2E-21 132.2 14.6 81 3-83 98-181 (335)
47 KOG4211 Splicing factor hnRNP- 99.7 1.8E-16 3.9E-21 140.0 15.2 167 5-220 9-179 (510)
48 PF00076 RRM_1: RNA recognitio 99.7 6E-17 1.3E-21 110.5 7.9 68 9-76 1-70 (70)
49 KOG0121 Nuclear cap-binding pr 99.7 4.7E-17 1E-21 119.0 7.2 80 4-83 34-116 (153)
50 KOG1190 Polypyrimidine tract-b 99.7 2E-15 4.4E-20 130.3 18.3 192 6-221 297-489 (492)
51 TIGR01659 sex-lethal sex-letha 99.7 5E-16 1.1E-20 137.7 14.6 79 5-83 192-275 (346)
52 KOG4676 Splicing factor, argin 99.7 5.1E-17 1.1E-21 139.4 6.9 181 4-206 5-213 (479)
53 PLN03120 nucleic acid binding 99.7 2.6E-16 5.7E-21 131.1 10.8 78 5-83 3-80 (260)
54 TIGR01648 hnRNP-R-Q heterogene 99.7 5.6E-16 1.2E-20 144.4 13.1 134 5-152 232-369 (578)
55 PLN03121 nucleic acid binding 99.7 8.5E-16 1.8E-20 126.1 10.6 81 1-83 1-81 (243)
56 PLN03134 glycine-rich RNA-bind 99.7 3E-15 6.6E-20 116.6 13.3 88 119-225 29-116 (144)
57 KOG0110 RNA-binding protein (R 99.6 8.7E-15 1.9E-19 134.4 15.2 199 4-221 383-596 (725)
58 KOG0122 Translation initiation 99.6 2.2E-15 4.8E-20 122.1 9.1 80 4-83 187-269 (270)
59 PF14259 RRM_6: RNA recognitio 99.6 3.8E-15 8.3E-20 101.8 8.1 68 9-76 1-70 (70)
60 KOG0114 Predicted RNA-binding 99.6 7.5E-15 1.6E-19 103.5 9.0 80 4-83 16-95 (124)
61 KOG0120 Splicing factor U2AF, 99.6 6.2E-15 1.3E-19 133.3 10.9 187 5-221 288-490 (500)
62 KOG0113 U1 small nuclear ribon 99.6 2.4E-14 5.1E-19 119.3 13.3 81 122-221 99-179 (335)
63 KOG0125 Ataxin 2-binding prote 99.6 4.9E-15 1.1E-19 124.8 8.1 80 4-83 94-174 (376)
64 KOG4212 RNA-binding protein hn 99.6 1.5E-13 3.4E-18 119.8 17.1 76 4-79 213-290 (608)
65 COG0724 RNA-binding proteins ( 99.6 6.5E-14 1.4E-18 120.5 15.0 144 6-161 115-262 (306)
66 KOG0124 Polypyrimidine tract-b 99.6 8.7E-14 1.9E-18 118.8 14.9 77 7-83 211-290 (544)
67 KOG0126 Predicted RNA-binding 99.6 4.9E-16 1.1E-20 120.5 0.0 80 4-83 33-115 (219)
68 smart00362 RRM_2 RNA recogniti 99.5 4.2E-14 9.2E-19 96.1 9.4 71 8-78 1-72 (72)
69 PLN03213 repressor of silencin 99.5 2.9E-14 6.2E-19 126.1 9.9 78 4-82 8-87 (759)
70 KOG0130 RNA-binding protein RB 99.5 2.3E-14 5E-19 105.9 6.2 77 7-83 73-152 (170)
71 KOG0149 Predicted RNA-binding 99.5 2.6E-14 5.7E-19 115.5 6.9 76 6-82 12-90 (247)
72 KOG0415 Predicted peptidyl pro 99.5 1.8E-14 3.9E-19 122.5 6.2 80 4-83 237-319 (479)
73 KOG0111 Cyclophilin-type pepti 99.5 5.9E-14 1.3E-18 112.1 7.3 80 4-83 8-90 (298)
74 KOG1190 Polypyrimidine tract-b 99.5 1.4E-12 3.1E-17 113.0 15.6 188 8-221 152-371 (492)
75 KOG1456 Heterogeneous nuclear 99.5 4.4E-12 9.6E-17 108.7 17.7 197 4-220 285-486 (494)
76 KOG0122 Translation initiation 99.5 3.3E-13 7.2E-18 109.6 10.0 89 116-223 181-269 (270)
77 cd00590 RRM RRM (RNA recogniti 99.5 6.1E-13 1.3E-17 90.8 9.7 72 8-79 1-74 (74)
78 PF00076 RRM_1: RNA recognitio 99.5 2.7E-13 5.8E-18 92.3 7.6 70 127-216 1-70 (70)
79 PF13893 RRM_5: RNA recognitio 99.4 7.3E-13 1.6E-17 86.3 8.3 56 23-80 1-56 (56)
80 smart00360 RRM RNA recognition 99.4 6.5E-13 1.4E-17 89.8 8.3 68 11-78 1-71 (71)
81 KOG1365 RNA-binding protein Fu 99.4 1.6E-13 3.4E-18 117.9 5.9 190 5-220 160-359 (508)
82 KOG0130 RNA-binding protein RB 99.4 6.6E-13 1.4E-17 98.2 8.0 81 122-221 70-150 (170)
83 KOG0109 RNA-binding protein LA 99.4 2.5E-13 5.4E-18 112.8 6.2 92 4-100 76-167 (346)
84 KOG0125 Ataxin 2-binding prote 99.4 8.4E-13 1.8E-17 111.4 7.8 80 121-221 93-172 (376)
85 KOG0108 mRNA cleavage and poly 99.4 1.1E-12 2.3E-17 118.3 8.9 78 7-84 19-99 (435)
86 KOG0120 Splicing factor U2AF, 99.4 4.2E-12 9.1E-17 115.2 10.3 183 4-221 173-367 (500)
87 KOG0105 Alternative splicing f 99.3 7.4E-12 1.6E-16 97.7 9.5 80 123-224 5-84 (241)
88 KOG0121 Nuclear cap-binding pr 99.3 6E-12 1.3E-16 92.4 6.7 81 122-221 34-114 (153)
89 smart00361 RRM_1 RNA recogniti 99.3 1.1E-11 2.4E-16 84.5 7.7 58 20-77 2-69 (70)
90 PLN03120 nucleic acid binding 99.3 1.5E-11 3.2E-16 102.9 9.9 76 124-222 4-79 (260)
91 PF14259 RRM_6: RNA recognitio 99.3 1.1E-11 2.3E-16 84.5 7.0 70 127-216 1-70 (70)
92 KOG0129 Predicted RNA-binding 99.3 8.7E-11 1.9E-15 105.1 14.4 162 5-200 258-432 (520)
93 KOG1456 Heterogeneous nuclear 99.3 1.2E-09 2.5E-14 94.1 19.2 192 4-221 118-361 (494)
94 KOG4454 RNA binding protein (R 99.2 5.8E-12 1.3E-16 100.8 4.6 142 4-206 7-150 (267)
95 KOG0131 Splicing factor 3b, su 99.2 1.1E-11 2.4E-16 96.5 5.5 83 120-221 5-87 (203)
96 KOG0149 Predicted RNA-binding 99.2 2.2E-11 4.8E-16 98.7 7.4 79 123-221 11-89 (247)
97 PLN03213 repressor of silencin 99.2 3.6E-11 7.8E-16 106.7 8.9 77 123-222 9-87 (759)
98 KOG0112 Large RNA-binding prot 99.2 1.4E-11 3E-16 116.2 5.3 158 4-221 370-529 (975)
99 smart00362 RRM_2 RNA recogniti 99.2 1.2E-10 2.7E-15 78.7 8.8 71 126-217 1-71 (72)
100 PLN03121 nucleic acid binding 99.2 1E-10 2.3E-15 96.3 9.6 76 123-221 4-79 (243)
101 KOG0114 Predicted RNA-binding 99.2 1E-10 2.2E-15 82.8 8.1 80 120-221 14-93 (124)
102 smart00360 RRM RNA recognition 99.2 1.5E-10 3.2E-15 78.0 8.6 70 129-217 1-70 (71)
103 KOG0126 Predicted RNA-binding 99.2 2.3E-12 4.9E-17 100.2 -1.2 81 122-221 33-113 (219)
104 KOG0132 RNA polymerase II C-te 99.2 9.5E-11 2.1E-15 109.1 8.2 76 5-83 420-495 (894)
105 KOG4211 Splicing factor hnRNP- 99.2 5.2E-10 1.1E-14 99.6 12.3 183 5-207 102-346 (510)
106 KOG0116 RasGAP SH3 binding pro 99.1 4.6E-10 9.9E-15 100.8 11.3 78 5-83 287-367 (419)
107 KOG0108 mRNA cleavage and poly 99.1 1.7E-10 3.7E-15 104.1 7.8 86 125-229 19-104 (435)
108 KOG0146 RNA-binding protein ET 99.1 8.4E-11 1.8E-15 96.8 5.1 81 3-83 282-365 (371)
109 KOG0533 RRM motif-containing p 99.1 3.2E-09 6.9E-14 88.6 14.1 80 5-84 82-163 (243)
110 cd00590 RRM RRM (RNA recogniti 99.1 1.4E-09 3E-14 73.9 9.3 73 126-218 1-73 (74)
111 COG0724 RNA-binding proteins ( 99.1 7.1E-10 1.5E-14 95.2 9.3 79 124-221 115-193 (306)
112 KOG4210 Nuclear localization s 99.0 3.9E-10 8.4E-15 97.3 6.6 178 5-228 87-269 (285)
113 smart00361 RRM_1 RNA recogniti 99.0 1.1E-09 2.4E-14 74.5 7.4 63 138-217 2-69 (70)
114 KOG0111 Cyclophilin-type pepti 99.0 2.4E-10 5.2E-15 91.6 4.4 83 122-223 8-90 (298)
115 KOG0153 Predicted RNA-binding 99.0 1.2E-09 2.6E-14 93.3 8.1 76 4-82 226-302 (377)
116 KOG4208 Nucleolar RNA-binding 99.0 1.1E-09 2.5E-14 87.2 7.5 79 5-83 48-130 (214)
117 KOG4661 Hsp27-ERE-TATA-binding 99.0 1.7E-09 3.7E-14 97.7 8.5 79 6-84 405-486 (940)
118 KOG0128 RNA-binding protein SA 99.0 1.1E-10 2.4E-15 109.8 -0.0 143 5-219 666-811 (881)
119 PF13893 RRM_5: RNA recognitio 98.9 6.2E-09 1.3E-13 67.5 6.0 56 141-220 1-56 (56)
120 KOG4307 RNA binding protein RB 98.9 3.8E-08 8.3E-13 91.0 13.1 77 5-81 433-512 (944)
121 KOG4205 RNA-binding protein mu 98.9 3.7E-09 8E-14 91.7 6.1 81 6-87 97-180 (311)
122 KOG4660 Protein Mei2, essentia 98.8 3.3E-09 7.2E-14 95.9 4.6 71 4-76 73-143 (549)
123 KOG0151 Predicted splicing reg 98.8 9.9E-09 2.1E-13 95.0 7.5 80 4-83 172-257 (877)
124 KOG0415 Predicted peptidyl pro 98.8 9.5E-09 2.1E-13 88.0 6.6 81 121-220 236-316 (479)
125 KOG0226 RNA-binding proteins [ 98.8 7.4E-09 1.6E-13 85.0 5.1 164 9-220 99-267 (290)
126 KOG4307 RNA binding protein RB 98.8 3.8E-08 8.2E-13 91.0 10.0 192 5-219 310-510 (944)
127 KOG2193 IGF-II mRNA-binding pr 98.8 2.9E-09 6.2E-14 93.1 1.9 149 7-219 2-153 (584)
128 KOG4208 Nucleolar RNA-binding 98.7 3.6E-08 7.9E-13 78.7 7.1 79 121-218 46-125 (214)
129 KOG4209 Splicing factor RNPS1, 98.7 2.5E-08 5.5E-13 83.3 5.3 79 4-83 99-180 (231)
130 PF04059 RRM_2: RNA recognitio 98.6 2.7E-07 5.8E-12 66.2 8.6 76 7-82 2-86 (97)
131 PF04059 RRM_2: RNA recognitio 98.6 5.9E-07 1.3E-11 64.4 9.3 82 125-221 2-85 (97)
132 KOG4661 Hsp27-ERE-TATA-binding 98.6 4.7E-07 1E-11 82.2 10.5 82 122-222 403-484 (940)
133 KOG4206 Spliceosomal protein s 98.5 3.3E-07 7.2E-12 74.4 7.8 76 125-222 10-89 (221)
134 KOG0106 Alternative splicing f 98.5 2.7E-07 5.9E-12 75.5 6.8 69 126-221 3-71 (216)
135 KOG1457 RNA binding protein (c 98.5 1.7E-07 3.6E-12 75.7 4.2 66 4-70 208-273 (284)
136 KOG1365 RNA-binding protein Fu 98.4 6.7E-06 1.4E-10 71.6 12.5 167 4-207 58-231 (508)
137 KOG0533 RRM motif-containing p 98.4 1.2E-06 2.7E-11 73.2 7.9 79 123-221 82-160 (243)
138 KOG4454 RNA binding protein (R 98.4 2.7E-07 5.8E-12 74.4 3.5 77 122-219 7-83 (267)
139 KOG1548 Transcription elongati 98.3 2.4E-06 5.2E-11 73.4 8.3 80 122-221 132-219 (382)
140 KOG0226 RNA-binding proteins [ 98.3 7.3E-07 1.6E-11 73.4 4.9 78 4-81 188-268 (290)
141 PF11608 Limkain-b1: Limkain b 98.3 3.8E-06 8.3E-11 57.6 7.4 69 7-82 3-76 (90)
142 KOG0153 Predicted RNA-binding 98.3 2.8E-06 6E-11 73.1 7.6 83 116-222 220-302 (377)
143 KOG0132 RNA polymerase II C-te 98.2 3E-06 6.5E-11 79.7 7.4 76 124-224 421-496 (894)
144 KOG4209 Splicing factor RNPS1, 98.2 2.5E-06 5.5E-11 71.4 5.1 81 121-221 98-178 (231)
145 KOG0116 RasGAP SH3 binding pro 98.2 1.2E-05 2.7E-10 72.6 9.7 79 124-222 288-366 (419)
146 PF08777 RRM_3: RNA binding mo 98.2 5.2E-06 1.1E-10 60.9 6.1 71 7-80 2-77 (105)
147 KOG0151 Predicted splicing reg 98.1 8.6E-06 1.9E-10 76.0 7.3 90 115-220 165-254 (877)
148 KOG1995 Conserved Zn-finger pr 98.1 3.9E-06 8.5E-11 72.6 4.6 80 4-83 64-154 (351)
149 KOG1995 Conserved Zn-finger pr 98.0 2E-05 4.3E-10 68.3 6.6 91 121-222 63-153 (351)
150 PF14605 Nup35_RRM_2: Nup53/35 98.0 2.9E-05 6.2E-10 49.4 5.6 53 6-62 1-53 (53)
151 KOG4210 Nuclear localization s 97.9 1.1E-05 2.4E-10 69.8 5.0 80 3-83 181-264 (285)
152 COG5175 MOT2 Transcriptional r 97.9 2.2E-05 4.8E-10 67.3 6.6 75 7-81 115-201 (480)
153 KOG4660 Protein Mei2, essentia 97.9 1.7E-05 3.8E-10 72.2 5.1 72 121-216 72-143 (549)
154 KOG0115 RNA-binding protein p5 97.8 6.2E-05 1.4E-09 62.4 7.1 107 57-221 6-112 (275)
155 PF08777 RRM_3: RNA binding mo 97.8 3E-05 6.5E-10 56.9 4.5 59 125-204 2-60 (105)
156 KOG2314 Translation initiation 97.8 5.1E-05 1.1E-09 69.3 6.7 76 6-81 58-142 (698)
157 KOG2202 U2 snRNP splicing fact 97.8 1E-05 2.2E-10 67.0 2.1 63 21-83 83-148 (260)
158 KOG2416 Acinus (induces apopto 97.8 3.6E-05 7.8E-10 70.6 5.4 77 4-83 442-522 (718)
159 PF05172 Nup35_RRM: Nup53/35/4 97.8 0.00018 3.8E-09 52.0 7.8 75 5-81 5-90 (100)
160 KOG4676 Splicing factor, argin 97.7 9.6E-06 2.1E-10 70.8 0.1 64 6-71 151-214 (479)
161 KOG3152 TBP-binding protein, a 97.6 2.9E-05 6.2E-10 64.3 2.5 69 6-74 74-157 (278)
162 KOG2202 U2 snRNP splicing fact 97.6 0.00019 4.1E-09 59.7 7.1 62 139-220 83-145 (260)
163 KOG1855 Predicted RNA-binding 97.6 4.8E-05 1E-09 67.3 3.1 64 5-68 230-309 (484)
164 KOG0128 RNA-binding protein SA 97.5 0.00017 3.6E-09 69.1 5.8 78 6-83 736-815 (881)
165 KOG4849 mRNA cleavage factor I 97.4 0.0005 1.1E-08 59.4 7.5 75 7-81 81-160 (498)
166 KOG0129 Predicted RNA-binding 97.4 0.00059 1.3E-08 62.0 8.2 60 4-63 368-431 (520)
167 PF08952 DUF1866: Domain of un 97.4 0.0011 2.4E-08 50.9 8.2 74 4-83 25-107 (146)
168 KOG0112 Large RNA-binding prot 97.4 0.00027 5.8E-09 68.1 5.4 77 4-83 453-531 (975)
169 PF11608 Limkain-b1: Limkain b 97.3 0.0011 2.3E-08 45.8 6.6 68 125-221 3-75 (90)
170 KOG1996 mRNA splicing factor [ 97.2 0.0012 2.6E-08 55.9 6.5 62 20-81 300-365 (378)
171 KOG2314 Translation initiation 97.1 0.0014 3.1E-08 60.2 6.9 68 124-207 58-131 (698)
172 PF14605 Nup35_RRM_2: Nup53/35 97.1 0.0014 3.1E-08 41.6 4.8 51 126-198 3-53 (53)
173 PF08675 RNA_bind: RNA binding 96.9 0.0061 1.3E-07 42.0 7.0 54 7-66 10-63 (87)
174 KOG1855 Predicted RNA-binding 96.8 0.0013 2.8E-08 58.5 4.2 76 121-203 228-308 (484)
175 PF15023 DUF4523: Protein of u 96.8 0.0091 2E-07 45.4 7.8 74 3-81 83-160 (166)
176 COG5175 MOT2 Transcriptional r 96.7 0.0055 1.2E-07 53.0 6.7 83 122-220 112-200 (480)
177 PF03467 Smg4_UPF3: Smg-4/UPF3 96.5 0.0039 8.4E-08 50.2 4.2 79 4-82 5-97 (176)
178 PF07576 BRAP2: BRCA1-associat 96.4 0.026 5.6E-07 41.6 8.1 68 5-72 12-81 (110)
179 PF03880 DbpA: DbpA RNA bindin 96.2 0.045 9.8E-07 37.3 7.6 66 8-80 2-74 (74)
180 PF10309 DUF2414: Protein of u 96.0 0.051 1.1E-06 35.5 6.9 53 7-65 6-62 (62)
181 PF05172 Nup35_RRM: Nup53/35/4 96.0 0.019 4.2E-07 41.5 5.4 74 124-208 6-80 (100)
182 KOG2135 Proteins containing th 96.0 0.005 1.1E-07 55.6 2.6 76 4-83 370-446 (526)
183 KOG0115 RNA-binding protein p5 95.8 0.011 2.3E-07 49.4 3.8 74 7-80 32-111 (275)
184 KOG3152 TBP-binding protein, a 95.8 0.0081 1.8E-07 50.1 3.0 79 126-207 76-154 (278)
185 KOG0835 Cyclin L [General func 95.8 0.014 3.1E-07 50.4 4.5 12 135-146 212-223 (367)
186 KOG2068 MOT2 transcription fac 95.8 0.0042 9.1E-08 53.8 1.3 77 7-83 78-163 (327)
187 KOG1996 mRNA splicing factor [ 95.7 0.039 8.5E-07 47.0 6.9 64 139-220 301-364 (378)
188 PF04847 Calcipressin: Calcipr 95.6 0.052 1.1E-06 43.9 7.0 62 19-83 8-71 (184)
189 KOG0804 Cytoplasmic Zn-finger 95.4 0.052 1.1E-06 49.0 6.7 68 5-72 73-142 (493)
190 KOG2591 c-Mpl binding protein, 95.2 0.083 1.8E-06 48.9 7.5 56 123-200 174-231 (684)
191 KOG2591 c-Mpl binding protein, 95.1 0.045 9.7E-07 50.6 5.5 70 4-77 173-246 (684)
192 PF11767 SET_assoc: Histone ly 95.0 0.16 3.5E-06 33.7 6.6 55 17-77 11-65 (66)
193 PF10309 DUF2414: Protein of u 94.9 0.22 4.7E-06 32.6 6.9 54 125-201 6-62 (62)
194 KOG2135 Proteins containing th 94.8 0.044 9.6E-07 49.7 4.7 74 123-222 371-445 (526)
195 KOG4285 Mitotic phosphoprotein 94.8 0.13 2.8E-06 44.1 7.2 70 9-83 200-270 (350)
196 KOG2416 Acinus (induces apopto 94.3 0.047 1E-06 50.9 3.7 77 122-220 442-519 (718)
197 KOG2253 U1 snRNP complex, subu 94.1 0.033 7.1E-07 52.5 2.3 72 4-81 38-109 (668)
198 KOG4849 mRNA cleavage factor I 93.9 0.061 1.3E-06 46.9 3.5 72 123-207 79-150 (498)
199 PF08952 DUF1866: Domain of un 93.5 0.22 4.7E-06 38.5 5.5 54 139-220 51-104 (146)
200 KOG2548 SWAP mRNA splicing reg 93.5 0.015 3.3E-07 53.1 -0.9 10 275-284 461-470 (653)
201 KOG2193 IGF-II mRNA-binding pr 93.1 0.014 2.9E-07 52.1 -1.7 79 5-83 79-157 (584)
202 KOG4574 RNA-binding protein (c 93.1 0.069 1.5E-06 51.8 2.7 73 9-84 301-375 (1007)
203 PF07576 BRAP2: BRCA1-associat 93.1 1.1 2.3E-05 33.1 8.4 65 126-207 15-80 (110)
204 KOG0835 Cyclin L [General func 92.9 0.16 3.4E-06 44.2 4.4 16 47-62 175-190 (367)
205 PF03467 Smg4_UPF3: Smg-4/UPF3 91.3 0.27 5.8E-06 39.6 3.8 86 123-221 6-96 (176)
206 PF11767 SET_assoc: Histone ly 90.7 1.2 2.6E-05 29.5 5.8 50 134-207 10-59 (66)
207 PF15023 DUF4523: Protein of u 90.7 0.53 1.2E-05 36.0 4.5 59 125-205 87-149 (166)
208 KOG2318 Uncharacterized conser 90.3 1.4 2.9E-05 41.4 7.7 78 3-80 171-305 (650)
209 PF08675 RNA_bind: RNA binding 90.2 0.72 1.6E-05 32.0 4.5 55 126-203 10-64 (87)
210 KOG0804 Cytoplasmic Zn-finger 90.0 1.6 3.4E-05 39.8 7.6 67 124-207 74-141 (493)
211 KOG1847 mRNA splicing factor [ 88.2 0.55 1.2E-05 44.4 3.7 12 126-137 604-615 (878)
212 KOG4574 RNA-binding protein (c 88.1 0.44 9.6E-06 46.5 3.1 74 126-222 300-373 (1007)
213 PF07292 NID: Nmi/IFP 35 domai 87.8 1.4 3E-05 31.0 4.7 73 48-146 1-74 (88)
214 PF04847 Calcipressin: Calcipr 84.6 3.8 8.2E-05 33.2 6.4 60 137-221 8-69 (184)
215 KOG2253 U1 snRNP complex, subu 84.5 2.3 5E-05 40.6 5.7 66 118-207 34-99 (668)
216 KOG3580 Tight junction protein 83.8 6.8 0.00015 37.3 8.3 41 121-161 58-99 (1027)
217 KOG4285 Mitotic phosphoprotein 83.1 2.2 4.8E-05 36.8 4.6 68 126-219 199-266 (350)
218 PF10567 Nab6_mRNP_bdg: RNA-re 81.0 3.4 7.4E-05 35.6 5.0 76 6-81 15-106 (309)
219 PRK14548 50S ribosomal protein 80.6 8.2 0.00018 26.9 6.0 57 9-65 23-81 (84)
220 KOG2068 MOT2 transcription fac 80.2 1.2 2.6E-05 39.0 2.0 79 124-218 77-158 (327)
221 KOG4483 Uncharacterized conser 79.8 3.1 6.8E-05 37.3 4.5 57 4-63 389-445 (528)
222 TIGR03636 L23_arch archaeal ri 78.4 11 0.00025 25.7 6.0 57 9-65 16-74 (77)
223 KOG4410 5-formyltetrahydrofola 77.5 5.6 0.00012 34.2 5.2 47 7-55 331-377 (396)
224 KOG4019 Calcineurin-mediated s 77.3 3 6.6E-05 33.3 3.3 75 6-83 10-90 (193)
225 KOG2888 Putative RNA binding p 77.2 1.3 2.8E-05 38.7 1.4 6 141-146 229-234 (453)
226 PF14111 DUF4283: Domain of un 77.2 3.3 7.1E-05 32.1 3.6 120 9-160 18-141 (153)
227 PRK11634 ATP-dependent RNA hel 72.9 20 0.00044 35.0 8.5 69 8-83 488-563 (629)
228 PF03468 XS: XS domain; Inter 72.8 3.8 8.2E-05 30.5 2.8 56 8-63 10-75 (116)
229 PF14893 PNMA: PNMA 72.5 4.8 0.0001 35.8 3.8 78 1-81 13-95 (331)
230 PF03880 DbpA: DbpA RNA bindin 72.4 14 0.00031 24.8 5.4 59 134-220 11-74 (74)
231 KOG2891 Surface glycoprotein [ 70.7 1.9 4.2E-05 36.7 0.9 66 5-70 148-247 (445)
232 KOG4410 5-formyltetrahydrofola 68.1 27 0.00059 30.1 7.1 50 122-191 328-377 (396)
233 PF15513 DUF4651: Domain of un 64.4 17 0.00037 23.6 4.1 19 20-38 8-26 (62)
234 KOG1295 Nonsense-mediated deca 63.1 7.7 0.00017 34.8 3.1 66 6-71 7-78 (376)
235 KOG2295 C2H2 Zn-finger protein 58.4 1.5 3.2E-05 41.0 -2.2 72 5-76 230-304 (648)
236 KOG4246 Predicted DNA-binding 57.9 4.9 0.00011 39.6 1.1 11 46-56 60-70 (1194)
237 COG5638 Uncharacterized conser 53.6 49 0.0011 30.1 6.4 78 3-80 143-295 (622)
238 KOG4213 RNA-binding protein La 51.5 21 0.00046 28.6 3.5 64 7-75 112-179 (205)
239 PF09707 Cas_Cas2CT1978: CRISP 50.9 44 0.00096 23.4 4.7 50 4-53 23-72 (86)
240 PF02829 3H: 3H domain; Inter 49.1 47 0.001 23.9 4.8 52 16-67 7-58 (98)
241 PTZ00191 60S ribosomal protein 47.7 76 0.0016 24.6 5.9 54 10-63 85-140 (145)
242 COG3254 Uncharacterized conser 46.2 90 0.002 22.7 5.7 42 21-63 27-69 (105)
243 KOG2146 Splicing coactivator S 43.6 50 0.0011 28.6 4.7 29 51-79 58-87 (354)
244 KOG4008 rRNA processing protei 43.1 23 0.0005 29.7 2.6 35 4-38 38-72 (261)
245 PF07530 PRE_C2HC: Associated 42.1 61 0.0013 21.5 4.1 60 21-83 2-65 (68)
246 KOG2812 Uncharacterized conser 42.0 29 0.00063 30.9 3.2 9 277-285 87-95 (426)
247 PF02714 DUF221: Domain of unk 41.9 53 0.0011 28.9 5.1 32 48-81 1-32 (325)
248 PF11411 DNA_ligase_IV: DNA li 41.0 21 0.00045 20.5 1.5 17 16-32 19-35 (36)
249 PRK11558 putative ssRNA endonu 39.8 64 0.0014 23.1 4.2 52 4-55 25-76 (97)
250 cd04889 ACT_PDH-BS-like C-term 39.3 91 0.002 19.1 5.9 42 21-62 13-55 (56)
251 KOG3869 Uncharacterized conser 39.2 11 0.00024 34.1 0.3 9 275-283 292-300 (450)
252 PF03439 Spt5-NGN: Early trans 39.1 65 0.0014 22.2 4.1 36 32-69 33-68 (84)
253 PF07292 NID: Nmi/IFP 35 domai 39.1 16 0.00034 25.8 0.9 24 4-27 50-73 (88)
254 PF08544 GHMP_kinases_C: GHMP 38.7 1.2E+02 0.0026 20.3 6.1 43 21-65 37-79 (85)
255 PRK14548 50S ribosomal protein 37.6 1.4E+02 0.003 20.8 6.4 57 127-201 23-81 (84)
256 PF01071 GARS_A: Phosphoribosy 36.2 1.1E+02 0.0024 25.0 5.6 47 18-65 24-70 (194)
257 PF10567 Nab6_mRNP_bdg: RNA-re 35.8 1E+02 0.0022 26.9 5.4 63 126-196 17-79 (309)
258 cd04908 ACT_Bt0572_1 N-termina 35.5 1.2E+02 0.0026 19.4 6.9 44 19-63 14-58 (66)
259 KOG2318 Uncharacterized conser 34.3 2.4E+02 0.0052 27.2 8.0 84 122-208 172-295 (650)
260 CHL00123 rps6 ribosomal protei 34.0 1.6E+02 0.0034 21.0 5.5 55 8-64 10-81 (97)
261 PF02714 DUF221: Domain of unk 33.3 45 0.00098 29.4 3.2 22 184-205 1-22 (325)
262 KOG4365 Uncharacterized conser 32.1 8.3 0.00018 35.2 -1.6 76 6-82 3-81 (572)
263 KOG0156 Cytochrome P450 CYP2 s 31.6 1E+02 0.0022 29.2 5.4 59 10-75 36-97 (489)
264 PRK08559 nusG transcription an 31.2 1.9E+02 0.004 22.5 6.0 33 33-67 36-68 (153)
265 smart00596 PRE_C2HC PRE_C2HC d 29.8 1.2E+02 0.0026 20.3 3.9 62 139-222 2-64 (69)
266 PF11823 DUF3343: Protein of u 29.7 65 0.0014 21.5 2.8 25 46-70 2-26 (73)
267 TIGR01873 cas_CT1978 CRISPR-as 29.7 1.1E+02 0.0025 21.4 4.0 51 4-54 23-74 (87)
268 PRK05738 rplW 50S ribosomal pr 29.3 1.4E+02 0.003 21.1 4.5 30 9-38 22-53 (92)
269 PF00403 HMA: Heavy-metal-asso 28.8 1.5E+02 0.0033 18.5 6.9 54 8-64 1-58 (62)
270 KOG1295 Nonsense-mediated deca 28.8 55 0.0012 29.5 2.9 71 124-207 7-78 (376)
271 COG5353 Uncharacterized protei 27.9 2.8E+02 0.0061 21.6 6.1 53 5-57 86-154 (161)
272 KOG2187 tRNA uracil-5-methyltr 26.9 66 0.0014 30.4 3.2 40 44-83 62-101 (534)
273 KOG4483 Uncharacterized conser 25.0 1.7E+02 0.0036 26.8 5.1 55 125-200 392-446 (528)
274 PF12829 Mhr1: Transcriptional 24.7 1.7E+02 0.0037 20.7 4.2 53 12-65 18-71 (91)
275 PF09902 DUF2129: Uncharacteri 24.7 1.9E+02 0.0041 19.4 4.3 39 26-70 16-54 (71)
276 COG0150 PurM Phosphoribosylami 24.6 26 0.00057 31.1 0.1 48 20-68 275-322 (345)
277 COG0030 KsgA Dimethyladenosine 24.1 1E+02 0.0022 26.5 3.6 32 7-38 96-127 (259)
278 PF08442 ATP-grasp_2: ATP-gras 23.9 2.3E+02 0.005 23.3 5.6 53 18-71 25-81 (202)
279 PF15063 TC1: Thyroid cancer p 23.8 53 0.0012 22.3 1.4 47 10-65 29-78 (79)
280 PRK11901 hypothetical protein; 22.7 2.2E+02 0.0047 25.3 5.4 59 5-67 244-306 (327)
281 PF00276 Ribosomal_L23: Riboso 22.4 2.2E+02 0.0047 20.0 4.5 48 10-57 23-85 (91)
282 KOG3424 40S ribosomal protein 21.9 2.3E+02 0.0049 21.2 4.5 49 135-195 34-83 (132)
283 KOG0862 Synaptobrevin/VAMP-lik 21.6 64 0.0014 26.7 1.8 30 21-55 89-119 (216)
284 KOG1888 Putative phosphoinosit 21.4 2.5E+02 0.0055 28.2 6.0 69 4-76 309-379 (868)
285 PRK02302 hypothetical protein; 21.2 2.3E+02 0.0051 20.0 4.3 38 27-70 23-60 (89)
286 PRK09631 DNA topoisomerase IV 20.7 8.3E+02 0.018 24.1 9.5 59 6-65 220-282 (635)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=1.4e-32 Score=242.75 Aligned_cols=168 Identities=22% Similarity=0.314 Sum_probs=149.1
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
...++|||+|||+++|+++|+++|+.||+|++|+|+. +++++|||||+|.++++|++||+.||+..|.++.|+|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 4678999999999999999999999999999999965 4678999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC
Q 022981 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (289)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~ 160 (289)
.+.. .....++|||.|||..+++++|+++|++||.|..+.|+.+.
T Consensus 185 ~p~~-----------------------------------~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~ 229 (346)
T TIGR01659 185 RPGG-----------------------------------ESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDK 229 (346)
T ss_pred cccc-----------------------------------cccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecC
Confidence 6431 01134589999999999999999999999999999999887
Q ss_pred CCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccCCC
Q 022981 161 EGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 223 (289)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~~~ 223 (289)
. |+++++||||+|.+.++|++|++.|++..+.+ ...+|.|..++..
T Consensus 230 ~---------------tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g--~~~~l~V~~a~~~ 275 (346)
T TIGR01659 230 L---------------TGTPRGVAFVRFNKREEAQEAISALNNVIPEG--GSQPLTVRLAEEH 275 (346)
T ss_pred C---------------CCccceEEEEEECCHHHHHHHHHHhCCCccCC--CceeEEEEECCcc
Confidence 6 67889999999999999999999999998862 1478888888743
No 2
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.4e-31 Score=205.37 Aligned_cols=193 Identities=67% Similarity=1.109 Sum_probs=161.7
Q ss_pred CCCCCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 1 m~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
|+++.+++|||+|||.++.+.+|+++|.+||.|.+|.|+....+..||||+|+++.+|+.||..-+|..++|..|.|+++
T Consensus 1 ~~gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 1 MSGRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred CCCcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 88899999999999999999999999999999999999877777889999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC
Q 022981 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (289)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~ 160 (289)
... + ......+.++++ +.++.++++...++.......|.|.+||...+++||++++.+.|.|.+.++.++
T Consensus 81 rgg--r--~s~~~~G~y~gg-----grgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD- 150 (241)
T KOG0105|consen 81 RGG--R--SSSDRRGSYSGG-----GRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD- 150 (241)
T ss_pred cCC--C--cccccccccCCC-----CCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-
Confidence 855 2 222333323222 222333445566778888999999999999999999999999999999999886
Q ss_pred CCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccCCCC
Q 022981 161 EGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSP 224 (289)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~~~~ 224 (289)
|++.|+|...++++.|+.+|+...+........|.|.......
T Consensus 151 ---------------------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~~~~~~~ 193 (241)
T KOG0105|consen 151 ---------------------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVRGDENRD 193 (241)
T ss_pred ---------------------cceeeeeeehhhHHHHHHhhccccccCcCcEeeEEecccCCCc
Confidence 4589999999999999999999999865555666676665443
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=2.6e-30 Score=239.90 Aligned_cols=177 Identities=19% Similarity=0.303 Sum_probs=151.0
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
..++|||+|||+++++++|+++|.+||+|.+|.|+. +++++|||||+|.+.++|+.||+.|||..|.|+.|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 467999999999999999999999999999999965 46889999999999999999999999999999999998654
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC
Q 022981 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (289)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~ 161 (289)
......+. ............+|||+|||..+++++|+++|+.||.|..+.|..+..
T Consensus 186 ~~p~a~~~------------------------~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~ 241 (612)
T TIGR01645 186 NMPQAQPI------------------------IDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPT 241 (612)
T ss_pred cccccccc------------------------cccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCC
Confidence 32100000 000111122346899999999999999999999999999999999887
Q ss_pred CCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccCCCC
Q 022981 162 GWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSP 224 (289)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~~~~ 224 (289)
++.++|||||+|++.++|.+|++.||+..++ |..|+|.++...+
T Consensus 242 ---------------tgksKGfGFVeFe~~e~A~kAI~amNg~elg----Gr~LrV~kAi~pP 285 (612)
T TIGR01645 242 ---------------GRGHKGYGFIEYNNLQSQSEAIASMNLFDLG----GQYLRVGKCVTPP 285 (612)
T ss_pred ---------------CCCcCCeEEEEECCHHHHHHHHHHhCCCeeC----CeEEEEEecCCCc
Confidence 5688999999999999999999999999998 9999999887544
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=1.3e-29 Score=227.49 Aligned_cols=167 Identities=22% Similarity=0.337 Sum_probs=147.1
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
++.++|||+|||+++++++|+++|+.||+|.+|+|+. +++++|||||+|.+.++|++||..|||..|.|+.|.|.++
T Consensus 1 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a 80 (352)
T TIGR01661 1 ESKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYA 80 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEee
Confidence 3578999999999999999999999999999999965 4678999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC
Q 022981 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (289)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~ 160 (289)
.+... .....+|||+|||..+++++|.++|..||.|..+.+..+.
T Consensus 81 ~~~~~-----------------------------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~ 125 (352)
T TIGR01661 81 RPSSD-----------------------------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDN 125 (352)
T ss_pred ccccc-----------------------------------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecC
Confidence 75410 1124589999999999999999999999999999998876
Q ss_pred CCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccCC
Q 022981 161 EGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 222 (289)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~~ 222 (289)
. ++.++|||||+|.+.++|+.|++.|+|..+.+ ...+|.|..+..
T Consensus 126 ~---------------~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g--~~~~i~v~~a~~ 170 (352)
T TIGR01661 126 V---------------TGLSKGVGFIRFDKRDEADRAIKTLNGTTPSG--CTEPITVKFANN 170 (352)
T ss_pred C---------------CCCcCcEEEEEECCHHHHHHHHHHhCCCccCC--CceeEEEEECCC
Confidence 6 55789999999999999999999999998873 246788877753
No 5
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=7.5e-29 Score=229.94 Aligned_cols=176 Identities=21% Similarity=0.284 Sum_probs=149.9
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
++.++|||+|||+.+++++|+++|++||+|.+|.|+.+ +.++|||||+|.+.++|++||. |+|..|.|++|.|.++
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 56789999999999999999999999999999999764 6789999999999999999998 9999999999999987
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC
Q 022981 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (289)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~ 160 (289)
............. .........+|||+|||..+++++|.++|..||.|..+.+..+.
T Consensus 166 ~~~~~~~~~~~~~-----------------------~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~ 222 (457)
T TIGR01622 166 QAEKNRAAKAATH-----------------------QPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDP 222 (457)
T ss_pred chhhhhhhhcccc-----------------------cCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC
Confidence 6432111100000 00001125799999999999999999999999999999999987
Q ss_pred CCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccCC
Q 022981 161 EGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 222 (289)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~~ 222 (289)
. +|.++|||||+|.+.++|..|++.|+|..+. |+.|.|..+..
T Consensus 223 ~---------------~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~----g~~i~v~~a~~ 265 (457)
T TIGR01622 223 E---------------TGRSKGFGFIQFHDAEEAKEALEVMNGFELA----GRPIKVGYAQD 265 (457)
T ss_pred C---------------CCccceEEEEEECCHHHHHHHHHhcCCcEEC----CEEEEEEEccC
Confidence 7 6688999999999999999999999999988 89999999763
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=3.4e-28 Score=218.31 Aligned_cols=200 Identities=21% Similarity=0.249 Sum_probs=149.6
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCC--ceEEEEE
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVEL 79 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~ 79 (289)
...+|||+|||+.+++++|.++|++||.|..+.+..+ +.++|||||+|.+.++|+.|++.|||..+.| ..|.|.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 4568999999999999999999999999999999654 5679999999999999999999999999987 6788888
Q ss_pred ccCCCCCCCCC-CC------CCCCCCCCCC------CCCC------------------C---------------CCCCCC
Q 022981 80 AHGGSGRGPSS-SD------RRGGYGGGGA------GGAG------------------G---------------AGAGAG 113 (289)
Q Consensus 80 ~~~~~~~~~~~-~~------~~~~~~~~~~------~~~~------------------~---------------~~~~~~ 113 (289)
+.......... .. .......... +... . ......
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 86543111000 00 0000000000 0000 0 000000
Q ss_pred ----------CC-CCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccce
Q 022981 114 ----------AG-RFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGT 182 (289)
Q Consensus 114 ----------~~-~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g 182 (289)
.+ ........+.+|||+|||+.+++++|.++|++||.|.++.|..+.. ||.++|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~---------------t~~skG 312 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLT---------------TNQCKG 312 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCC---------------CCCccc
Confidence 00 0000112344799999999999999999999999999999999887 678999
Q ss_pred EEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccCCC
Q 022981 183 YGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 223 (289)
Q Consensus 183 ~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~~~ 223 (289)
||||+|.+.++|..|+..|+|..+. |+.|+|......
T Consensus 313 ~aFV~F~~~~~A~~Ai~~lnG~~~~----gr~i~V~~~~~~ 349 (352)
T TIGR01661 313 YGFVSMTNYDEAAMAILSLNGYTLG----NRVLQVSFKTNK 349 (352)
T ss_pred eEEEEECCHHHHHHHHHHhCCCEEC----CeEEEEEEccCC
Confidence 9999999999999999999999999 999999987643
No 7
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=2.9e-27 Score=224.48 Aligned_cols=162 Identities=27% Similarity=0.447 Sum_probs=142.8
Q ss_pred CeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCC
Q 022981 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (289)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (289)
.+|||+|||+++|+++|.++|++||+|.+|+|..+ ++++|||||+|.+.++|++|+..|++..|.|+.|.|.|+...
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 37999999999999999999999999999999654 678899999999999999999999999999999999998633
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCC
Q 022981 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGW 163 (289)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~ 163 (289)
.. .......+|||+|||.++++++|.++|++||.|..+.|..+..|
T Consensus 81 ~~---------------------------------~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g- 126 (562)
T TIGR01628 81 PS---------------------------------LRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENG- 126 (562)
T ss_pred cc---------------------------------ccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCC-
Confidence 10 00112347999999999999999999999999999999987654
Q ss_pred CchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccC
Q 022981 164 QSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~ 221 (289)
+++|||||+|++.++|.+|++.+++..+. ++.|.|....
T Consensus 127 ---------------~skg~afV~F~~~e~A~~Ai~~lng~~~~----~~~i~v~~~~ 165 (562)
T TIGR01628 127 ---------------KSRGYGFVHFEKEESAKAAIQKVNGMLLN----DKEVYVGRFI 165 (562)
T ss_pred ---------------CcccEEEEEECCHHHHHHHHHHhcccEec----CceEEEeccc
Confidence 68999999999999999999999999988 8888886554
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.95 E-value=1.7e-26 Score=214.57 Aligned_cols=195 Identities=16% Similarity=0.199 Sum_probs=144.2
Q ss_pred CCCCeEEEcCCCC-CccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccC
Q 022981 4 RFSRTIYVGNLPS-DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (289)
Q Consensus 4 ~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 82 (289)
.++++|||+|||+ .+|+++|.++|+.||.|..|+|+.+. +|||||+|.+.++|+.||..|||..|.|+.|.|.+++.
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~--~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK--KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 4778999999998 69999999999999999999998763 79999999999999999999999999999999999876
Q ss_pred CCCCCCCCCC---C---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCC--eeEE
Q 022981 83 GSGRGPSSSD---R---RGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGD--VCFA 154 (289)
Q Consensus 83 ~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~--v~~~ 154 (289)
.....+.... . ...+..... .....+..........+..+|||.|||..+++++|+++|+.||. |..+
T Consensus 351 ~~~~~~~~~~~~~~~~~~~d~~~~~~----~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~i 426 (481)
T TIGR01649 351 QNVQPPREGQLDDGLTSYKDYSSSRN----HRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKF 426 (481)
T ss_pred ccccCCCCCcCcCCCcccccccCCcc----ccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEE
Confidence 5322211100 0 001110000 00000001111112245678999999999999999999999998 7888
Q ss_pred EEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccc--eeeeeccC
Q 022981 155 EVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG--RITVKRYD 221 (289)
Q Consensus 155 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~--~i~v~~~~ 221 (289)
.+..... ..+++|||+|++.++|.+|+..||+..+.+..+.. .|+|..+.
T Consensus 427 k~~~~~~-----------------~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~ 478 (481)
T TIGR01649 427 KFFPKDN-----------------ERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFST 478 (481)
T ss_pred EEecCCC-----------------CcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEecc
Confidence 7765433 24689999999999999999999999998322211 36666654
No 9
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=1e-26 Score=218.44 Aligned_cols=189 Identities=19% Similarity=0.283 Sum_probs=143.2
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhc------------CCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeC
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKY------------GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~------------G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 71 (289)
...++|||+|||+.+|+++|.++|.+| +.|..+.+. ..+|||||+|.+.++|..||+ |+|+.|.
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~---~~kg~afVeF~~~e~A~~Al~-l~g~~~~ 248 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN---KEKNFAFLEFRTVEEATFAMA-LDSIIYS 248 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC---CCCCEEEEEeCCHHHHhhhhc-CCCeEee
Confidence 567899999999999999999999975 345555554 348999999999999999996 9999999
Q ss_pred CceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCe
Q 022981 72 GCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDV 151 (289)
Q Consensus 72 g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v 151 (289)
|+.|+|................. ..... .. ..................+|||+|||..+++++|.++|..||.|
T Consensus 249 g~~l~v~r~~~~~~~~~~~~~~~-~~~~~-~~----~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i 322 (509)
T TIGR01642 249 NVFLKIRRPHDYIPVPQITPEVS-QKNPD-DN----AKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDL 322 (509)
T ss_pred CceeEecCccccCCccccCCCCC-CCCCc-cc----ccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 99999986654421110000000 00000 00 00000000111122345799999999999999999999999999
Q ss_pred eEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccC
Q 022981 152 CFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 152 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~ 221 (289)
..+.|+.+.. +|.++|||||+|.+.++|..|++.|+|..+. +..|.|..+.
T Consensus 323 ~~~~~~~~~~---------------~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~----~~~l~v~~a~ 373 (509)
T TIGR01642 323 KAFNLIKDIA---------------TGLSKGYAFCEYKDPSVTDVAIAALNGKDTG----DNKLHVQRAC 373 (509)
T ss_pred eEEEEEecCC---------------CCCcCeEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEEECc
Confidence 9999998876 6789999999999999999999999999998 8999999875
No 10
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.95 E-value=2.7e-26 Score=213.20 Aligned_cols=170 Identities=16% Similarity=0.139 Sum_probs=139.6
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHh--CCceeCCceEEEEEccC
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR--DGYNFDGCRLRVELAHG 82 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v~~~~~ 82 (289)
|+++|||+|||+++++++|.++|+.||+|..|.|+.+ ++||||+|++.++|++|++.| ++..|.|+.|.|+++..
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~---k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG---KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC---CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 6899999999999999999999999999999999753 789999999999999999874 78999999999999975
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC
Q 022981 83 GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG 162 (289)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~ 162 (289)
.......... ..........+|+|.||++.+++++|.++|+.||.|..+.|..+..
T Consensus 78 ~~~~~~~~~~-----------------------~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~- 133 (481)
T TIGR01649 78 QEIKRDGNSD-----------------------FDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN- 133 (481)
T ss_pred cccccCCCCc-----------------------ccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC-
Confidence 4211110000 0000112345799999999999999999999999999999987543
Q ss_pred CCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccC
Q 022981 163 WQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~ 221 (289)
.++|||+|.+.++|.+|++.|+|..+.+. .+.|+|+.++
T Consensus 134 ------------------~~~afVef~~~~~A~~A~~~Lng~~i~~~--~~~l~v~~sk 172 (481)
T TIGR01649 134 ------------------VFQALVEFESVNSAQHAKAALNGADIYNG--CCTLKIEYAK 172 (481)
T ss_pred ------------------ceEEEEEECCHHHHHHHHHHhcCCcccCC--ceEEEEEEec
Confidence 36899999999999999999999998631 3578887765
No 11
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.95 E-value=5.6e-26 Score=210.76 Aligned_cols=192 Identities=20% Similarity=0.260 Sum_probs=140.4
Q ss_pred CCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC--CCCCceEEEEEccHHHHHHHHHHhCCceeC-CceEEEEEccC
Q 022981 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFD-GCRLRVELAHG 82 (289)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~~~~ 82 (289)
.++|||+|||+++++++|.++|++||+|.+|+|+.+ +.++|||||+|.+.++|++||+.||+..|. |+.|.|..+..
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~ 137 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVD 137 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccccc
Confidence 589999999999999999999999999999999764 788999999999999999999999999885 78777766542
Q ss_pred CCC-----CCCCC------------C---------CCCCCCCCCCCCC------------------CCC---CCCC----
Q 022981 83 GSG-----RGPSS------------S---------DRRGGYGGGGAGG------------------AGG---AGAG---- 111 (289)
Q Consensus 83 ~~~-----~~~~~------------~---------~~~~~~~~~~~~~------------------~~~---~~~~---- 111 (289)
... -.... . ..........+.+ .+. .+..
T Consensus 138 ~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~Vd 217 (578)
T TIGR01648 138 NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVD 217 (578)
T ss_pred CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEE
Confidence 110 00000 0 0000000000000 000 0000
Q ss_pred ---CCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhc--CCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEE
Q 022981 112 ---AGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKA--GDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVV 186 (289)
Q Consensus 112 ---~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~--g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv 186 (289)
+.............+|||+||+..+++++|+++|++| |.|+.+.+.+ +||||
T Consensus 218 wA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-----------------------gfAFV 274 (578)
T TIGR01648 218 WAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-----------------------DYAFV 274 (578)
T ss_pred eecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-----------------------CeEEE
Confidence 0000001112335689999999999999999999999 9999887654 59999
Q ss_pred ecCChHHHHHHHHhcCCcccCCccccceeeeeccCCCC
Q 022981 187 DYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSP 224 (289)
Q Consensus 187 ~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~~~~ 224 (289)
+|++.++|.+|++.|++..+. ++.|.|..+....
T Consensus 275 eF~s~e~A~kAi~~lnG~~i~----Gr~I~V~~Akp~~ 308 (578)
T TIGR01648 275 HFEDREDAVKAMDELNGKELE----GSEIEVTLAKPVD 308 (578)
T ss_pred EeCCHHHHHHHHHHhCCCEEC----CEEEEEEEccCCC
Confidence 999999999999999999999 9999999997543
No 12
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.94 E-value=5.8e-26 Score=215.57 Aligned_cols=181 Identities=22% Similarity=0.335 Sum_probs=149.6
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC--CCCCceEEEEEccHHHHHHHHHHhCCceeC----CceEEEE
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFD----GCRLRVE 78 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~v~ 78 (289)
..++|||+|||+++|+++|+++|+.||.|..+.+..+ +..+|||||+|.+.++|.+|++.|+|..|. |+.|.|.
T Consensus 177 ~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~ 256 (562)
T TIGR01628 177 KFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVG 256 (562)
T ss_pred CCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEee
Confidence 4578999999999999999999999999999999654 577899999999999999999999999999 9999999
Q ss_pred EccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEee
Q 022981 79 LAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSR 158 (289)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~ 158 (289)
++.....+.......... ...........++|||+||+..+++++|+++|+.||.|..+.|..
T Consensus 257 ~a~~k~er~~~~~~~~~~-----------------~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~ 319 (562)
T TIGR01628 257 RAQKRAEREAELRRKFEE-----------------LQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVML 319 (562)
T ss_pred cccChhhhHHHHHhhHHh-----------------hhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEE
Confidence 887553221000000000 000011123456899999999999999999999999999999999
Q ss_pred CCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccCC
Q 022981 159 DSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 222 (289)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~~ 222 (289)
+.. |.++|||||+|.+.++|.+|+..||+..+. |+.|.|..+.+
T Consensus 320 d~~----------------g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~----gk~l~V~~a~~ 363 (562)
T TIGR01628 320 DEK----------------GVSRGFGFVCFSNPEEANRAVTEMHGRMLG----GKPLYVALAQR 363 (562)
T ss_pred CCC----------------CCcCCeEEEEeCCHHHHHHHHHHhcCCeeC----CceeEEEeccC
Confidence 844 478999999999999999999999999998 99999998874
No 13
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=3.3e-26 Score=186.82 Aligned_cols=171 Identities=20% Similarity=0.285 Sum_probs=143.9
Q ss_pred CeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCC
Q 022981 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (289)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (289)
--|||+.|.++++-++|++.|.+||+|.+++|+. ++++|||+||.|.+.++|+.||+.|||..|++|.|+-.|+..+
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRK 142 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRK 142 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccC
Confidence 3599999999999999999999999999999966 4799999999999999999999999999999999999999855
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCC
Q 022981 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGW 163 (289)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~ 163 (289)
. ..... ++-.-..-+......+++||++|++..+++++|++.|..||+|..|.|.++
T Consensus 143 p----~e~n~---------------~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~---- 199 (321)
T KOG0148|consen 143 P----SEMNG---------------KPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD---- 199 (321)
T ss_pred c----cccCC---------------CCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc----
Confidence 2 10000 000001123345567889999999999999999999999999999999986
Q ss_pred CchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccC
Q 022981 164 QSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~ 221 (289)
+||+||.|++.|.|.+||..+|+.++. |..++....+
T Consensus 200 -----------------qGYaFVrF~tkEaAahAIv~mNntei~----G~~VkCsWGK 236 (321)
T KOG0148|consen 200 -----------------QGYAFVRFETKEAAAHAIVQMNNTEIG----GQLVRCSWGK 236 (321)
T ss_pred -----------------cceEEEEecchhhHHHHHHHhcCceeC----ceEEEEeccc
Confidence 469999999999999999999999998 6666655443
No 14
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=3.4e-26 Score=185.81 Aligned_cols=168 Identities=22% Similarity=0.312 Sum_probs=150.9
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
+..+.|.|--||..||+|||+.+|...|+|+.|+++.| +++.||+||-|-+++||++|+..|||..+..+.|+|.++
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 44567889899999999999999999999999999664 789999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC
Q 022981 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (289)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~ 160 (289)
.+.. ......+|||.+||..+++.+|.++|..||.|....|..+.
T Consensus 119 RPSs-----------------------------------~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dq 163 (360)
T KOG0145|consen 119 RPSS-----------------------------------DSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQ 163 (360)
T ss_pred cCCh-----------------------------------hhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhc
Confidence 8651 12344589999999999999999999999999988888877
Q ss_pred CCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccCCC
Q 022981 161 EGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 223 (289)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~~~ 223 (289)
- ||.++|.+||.|....+|++||+.|+|..-. .+..+|.|+.+..+
T Consensus 164 v---------------tg~srGVgFiRFDKr~EAe~AIk~lNG~~P~--g~tepItVKFannP 209 (360)
T KOG0145|consen 164 V---------------TGLSRGVGFIRFDKRIEAEEAIKGLNGQKPS--GCTEPITVKFANNP 209 (360)
T ss_pred c---------------cceecceeEEEecchhHHHHHHHhccCCCCC--CCCCCeEEEecCCc
Confidence 7 7899999999999999999999999999865 34779999998753
No 15
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.94 E-value=5.6e-26 Score=175.43 Aligned_cols=167 Identities=22% Similarity=0.293 Sum_probs=146.3
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
+...||||+||+..++++.|.++|-+.|+|.++++..+ ...+|||||+|.++|+|+-|++.||...+.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 56789999999999999999999999999999999654 567999999999999999999999999999999999987
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEE-EEeeC
Q 022981 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA-EVSRD 159 (289)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~-~i~~~ 159 (289)
... .....-+.+|||+||.+.+++..|.+.|+.+|.+... +|+.+
T Consensus 87 s~~----------------------------------~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd 132 (203)
T KOG0131|consen 87 SAH----------------------------------QKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRD 132 (203)
T ss_pred ccc----------------------------------cccccccccccccccCcchhHHHHHHHHHhccccccCCccccc
Confidence 622 0111223589999999999999999999999998653 46666
Q ss_pred CCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccCCC
Q 022981 160 SEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 223 (289)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~~~ 223 (289)
+. ||.+++||||.|.+.+.+.+|++.+++..+. .++|.|..+...
T Consensus 133 ~~---------------tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~----nr~itv~ya~k~ 177 (203)
T KOG0131|consen 133 PD---------------TGNPKGFGFINYASFEASDAAIGSMNGQYLC----NRPITVSYAFKK 177 (203)
T ss_pred cc---------------CCCCCCCeEEechhHHHHHHHHHHhccchhc----CCceEEEEEEec
Confidence 66 7789999999999999999999999999998 799999988643
No 16
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.94 E-value=4.7e-25 Score=207.25 Aligned_cols=195 Identities=17% Similarity=0.246 Sum_probs=144.3
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.+.++|||+|||+.+|+++|.++|+.||.|..+.|+. ++.++|||||+|.+.++|+.||..|||..|.|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3457999999999999999999999999999999865 4778999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCC----------CHHHHHHHHHhcCC
Q 022981 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSA----------SWQDLKDHMRKAGD 150 (289)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~----------~~~~l~~~f~~~g~ 150 (289)
.......... ........ .. ... ............+..+|+|.|+...- ..++|.++|.+||.
T Consensus 373 ~~~~~~~~~~--~~~~~~~~-~~--~~~--~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~ 445 (509)
T TIGR01642 373 CVGANQATID--TSNGMAPV-TL--LAK--ALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGP 445 (509)
T ss_pred ccCCCCCCcc--cccccccc-cc--ccc--cchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCC
Confidence 7542111110 00000000 00 000 00000011122345688999986321 23689999999999
Q ss_pred eeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccC
Q 022981 151 VCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 151 v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~ 221 (289)
|..+.|+++..+ ..++...|+|||+|.+.++|.+|+..|+|..|. |+.|.+.+..
T Consensus 446 v~~v~i~~~~~~------------~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~----gr~v~~~~~~ 500 (509)
T TIGR01642 446 LINIVIPRPNGD------------RNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFN----DRVVVAAFYG 500 (509)
T ss_pred eeEEEeeccCcC------------CCcCCCcceEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEEEeC
Confidence 999999876321 013456799999999999999999999999999 9999988764
No 17
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=1.6e-25 Score=193.38 Aligned_cols=171 Identities=23% Similarity=0.387 Sum_probs=147.4
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCce-eCC--ceEEEE
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYN-FDG--CRLRVE 78 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~l~v~ 78 (289)
..-.||||-||..++|.||+++|++||.|.+|.|+.| +.++|+|||.|.+.++|.+|+..|++.. |-| .+|+|.
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 3456999999999999999999999999999999765 6889999999999999999999997754 544 788888
Q ss_pred EccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEee
Q 022981 79 LAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSR 158 (289)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~ 158 (289)
++.....+ .....+|||+-|+..+++.+|+++|.+||.|+.+.|.+
T Consensus 113 ~Ad~E~er----------------------------------~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilr 158 (510)
T KOG0144|consen 113 YADGERER----------------------------------IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILR 158 (510)
T ss_pred ccchhhhc----------------------------------cccchhhhhhhccccccHHHHHHHHHhhCccchhhhee
Confidence 88755211 12345899999999999999999999999999999999
Q ss_pred CCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccCCCCCC
Q 022981 159 DSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSPSR 226 (289)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~~~~~r 226 (289)
+..+ .++|||||.|.+.+.|..|++.||+..-. ..+..+|.|+.++....+
T Consensus 159 d~~~----------------~sRGcaFV~fstke~A~~Aika~ng~~tm-eGcs~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 159 DPDG----------------LSRGCAFVKFSTKEMAVAAIKALNGTQTM-EGCSQPLVVKFADTQKDK 209 (510)
T ss_pred cccc----------------cccceeEEEEehHHHHHHHHHhhccceee-ccCCCceEEEecccCCCc
Confidence 9886 78999999999999999999999998765 245779999999865444
No 18
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.93 E-value=6.8e-24 Score=196.82 Aligned_cols=193 Identities=22% Similarity=0.345 Sum_probs=139.9
Q ss_pred CCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccC
Q 022981 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (289)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 82 (289)
.++|||+|||+.+|+++|.++|++||.|..|.|..+ +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 589999999999999999999999999999999754 47799999999999999999999999999999999999774
Q ss_pred CCCCCCCCCCC---CC-CCCC------------------CCCCCC--CCCCC---------CCC-C--------------
Q 022981 83 GSGRGPSSSDR---RG-GYGG------------------GGAGGA--GGAGA---------GAG-A-------------- 114 (289)
Q Consensus 83 ~~~~~~~~~~~---~~-~~~~------------------~~~~~~--~~~~~---------~~~-~-------------- 114 (289)
........... .. ...+ ...++. ..... ..+ .
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 32111100000 00 0000 000000 00000 000 0
Q ss_pred ----CCCCC---CCCCcceeeecCCCCCCC----------HHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcc
Q 022981 115 ----GRFGI---SRHSEYRVIVRGLPSSAS----------WQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLC 177 (289)
Q Consensus 115 ----~~~~~---~~~~~~~l~v~nlp~~~~----------~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~ 177 (289)
....+ ......+|+|.||....+ .+||.+.|.+||.|..+.|.....
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~---------------- 409 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNS---------------- 409 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCC----------------
Confidence 00000 113456889999954443 368999999999999998875433
Q ss_pred cccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccC
Q 022981 178 VYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 178 ~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~ 221 (289)
.|++||+|.+.++|..|++.|+|..|. |+.|.+....
T Consensus 410 ---~G~~fV~F~~~e~A~~A~~~lnGr~f~----gr~i~~~~~~ 446 (457)
T TIGR01622 410 ---AGKIYLKFSSVDAALAAFQALNGRYFG----GKMITAAFVV 446 (457)
T ss_pred ---ceeEEEEECCHHHHHHHHHHhcCcccC----CeEEEEEEEc
Confidence 589999999999999999999999999 9999988764
No 19
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=1.5e-24 Score=176.18 Aligned_cols=196 Identities=23% Similarity=0.307 Sum_probs=151.0
Q ss_pred CCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCC--ceEEEEEc
Q 022981 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVELA 80 (289)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~~ 80 (289)
...|||.+||..||..||+++|++||.|..-+|.. ++.++|.+||.|...++|+.||..|||..-.| .+|.|.|+
T Consensus 127 ~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFa 206 (360)
T KOG0145|consen 127 DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFA 206 (360)
T ss_pred ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEec
Confidence 46799999999999999999999999998877744 47899999999999999999999999999876 68999999
Q ss_pred cCCCCCCCCC--CCCC----CCCCCCCCCCC-C---------------------CCCCCCCCCCCCCCCCCcceeeecCC
Q 022981 81 HGGSGRGPSS--SDRR----GGYGGGGAGGA-G---------------------GAGAGAGAGRFGISRHSEYRVIVRGL 132 (289)
Q Consensus 81 ~~~~~~~~~~--~~~~----~~~~~~~~~~~-~---------------------~~~~~~~~~~~~~~~~~~~~l~v~nl 132 (289)
.......... ..-+ ..+.++..... . .+-.+-.+.........+++|||-||
T Consensus 207 nnPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNL 286 (360)
T KOG0145|consen 207 NNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNL 286 (360)
T ss_pred CCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEec
Confidence 8663221110 0000 00111100000 0 00000001122233455789999999
Q ss_pred CCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCcccc
Q 022981 133 PSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR 212 (289)
Q Consensus 133 p~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g 212 (289)
.+++++..|.++|..||.|.+++|.++.. |.+++|||||.+.+.++|..|+..|+|+.++ +
T Consensus 287 spd~de~~LWQlFgpFGAv~nVKvirD~t---------------tnkCKGfgFVtMtNYdEAamAi~sLNGy~lg----~ 347 (360)
T KOG0145|consen 287 SPDADESILWQLFGPFGAVTNVKVIRDFT---------------TNKCKGFGFVTMTNYDEAAMAIASLNGYRLG----D 347 (360)
T ss_pred CCCchHhHHHHHhCcccceeeEEEEecCC---------------cccccceeEEEecchHHHHHHHHHhcCcccc----c
Confidence 99999999999999999999999999988 7799999999999999999999999999999 8
Q ss_pred ceeeeecc
Q 022981 213 GRITVKRY 220 (289)
Q Consensus 213 ~~i~v~~~ 220 (289)
+.+.|...
T Consensus 348 rvLQVsFK 355 (360)
T KOG0145|consen 348 RVLQVSFK 355 (360)
T ss_pred eEEEEEEe
Confidence 88888654
No 20
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=2.4e-24 Score=190.91 Aligned_cols=187 Identities=18% Similarity=0.258 Sum_probs=148.2
Q ss_pred CCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccC
Q 022981 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (289)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 82 (289)
..||||++||+.++.++|.++|+.+|+|..+.+... +.++||+||.|+-++|++.|++.+++..|.|+.|.|.++..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 389999999999999999999999999999999654 46799999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC
Q 022981 83 GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG 162 (289)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~ 162 (289)
......-.............. . .........+.+.|+|.|||+.+...+|+.+|+.||.|..+.|+....|
T Consensus 85 R~r~e~~~~~e~~~veK~~~q--------~-~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dg 155 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQ--------K-RPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDG 155 (678)
T ss_pred cccchhcccccchhhhccccc--------C-CcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCC
Confidence 521110000000000000000 0 0000011233679999999999999999999999999999999987775
Q ss_pred CCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccC
Q 022981 163 WQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~ 221 (289)
..+|||||.|....+|..|++.|++.++. |++|.|+.|-
T Consensus 156 ----------------klcGFaFV~fk~~~dA~~Al~~~N~~~i~----gR~VAVDWAV 194 (678)
T KOG0127|consen 156 ----------------KLCGFAFVQFKEKKDAEKALEFFNGNKID----GRPVAVDWAV 194 (678)
T ss_pred ----------------CccceEEEEEeeHHHHHHHHHhccCceec----CceeEEeeec
Confidence 55699999999999999999999999999 9999999764
No 21
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=3.6e-24 Score=185.80 Aligned_cols=160 Identities=24% Similarity=0.383 Sum_probs=140.1
Q ss_pred CCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCcee-CCceEEEEEcc
Q 022981 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNF-DGCRLRVELAH 81 (289)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g~~l~v~~~~ 81 (289)
.+-||||.||-++.|++|..||++.|+|.+++|+.+ +.++|||||+|.+.++|+.|++.||+..| .|+.|.|+.+.
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sv 162 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSV 162 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEee
Confidence 467999999999999999999999999999999775 78999999999999999999999999999 69999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCC-eeEEEEeeCC
Q 022981 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGD-VCFAEVSRDS 160 (289)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~-v~~~~i~~~~ 160 (289)
. .++|||+|+|...++++|.+.|++.++ |..|.+...+
T Consensus 163 a-----------------------------------------n~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p 201 (506)
T KOG0117|consen 163 A-----------------------------------------NCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSP 201 (506)
T ss_pred e-----------------------------------------cceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCc
Confidence 4 469999999999999999999999875 6666666655
Q ss_pred CCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccCC
Q 022981 161 EGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 222 (289)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~~ 222 (289)
. +..+++|||||+|++...|..|..+|-...|. .-|..+.|+.++.
T Consensus 202 ~--------------dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~k--lwgn~~tVdWAep 247 (506)
T KOG0117|consen 202 D--------------DKTKNRGFAFVEYESHRAAAMARRKLMPGKIK--LWGNAITVDWAEP 247 (506)
T ss_pred c--------------ccccccceEEEEeecchhHHHHHhhccCCcee--ecCCcceeeccCc
Confidence 5 36699999999999999999998887766665 2267788888764
No 22
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.92 E-value=7e-25 Score=180.77 Aligned_cols=146 Identities=32% Similarity=0.578 Sum_probs=136.6
Q ss_pred CeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCCCCC
Q 022981 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGR 86 (289)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~ 86 (289)
-.|||||||..+++.+|+.+|++||+|.+|.|+ |.||||-.++...|+.|+..|||-+|+|..|.|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-----KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK--- 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV-----KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK--- 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee-----cccceEEeecccccHHHHhhcccceecceEEEEEecccc---
Confidence 369999999999999999999999999999999 789999999999999999999999999999999999866
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCch
Q 022981 87 GPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSP 166 (289)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~ 166 (289)
....++|+|+|+.+.++.++|+..|.+||+|..++|.+
T Consensus 75 ----------------------------------sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk-------- 112 (346)
T KOG0109|consen 75 ----------------------------------SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK-------- 112 (346)
T ss_pred ----------------------------------CCCccccccCCCCccccCHHHhhhhcccCCceeeeeec--------
Confidence 13456899999999999999999999999999999988
Q ss_pred hHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccC
Q 022981 167 AMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 167 ~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~ 221 (289)
+|+||.|+-.++|..|+..|++++|. |..++|+...
T Consensus 113 ---------------dy~fvh~d~~eda~~air~l~~~~~~----gk~m~vq~st 148 (346)
T KOG0109|consen 113 ---------------DYAFVHFDRAEDAVEAIRGLDNTEFQ----GKRMHVQLST 148 (346)
T ss_pred ---------------ceeEEEEeeccchHHHHhcccccccc----cceeeeeeec
Confidence 59999999999999999999999999 8999988654
No 23
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=2.5e-23 Score=184.55 Aligned_cols=198 Identities=20% Similarity=0.313 Sum_probs=146.6
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc--CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccC
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 82 (289)
+.-.|.|.|||+.+.+.+|..+|+.||.|.+|.|+. +++-.|||||+|.+..+|..||..||+..|+|++|-|.||-+
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 356899999999999999999999999999999954 567779999999999999999999999999999999999986
Q ss_pred CCCCCCCC--------------------CCCCCCCC-------CCC----CC-----CCCCC--------CCC--CC---
Q 022981 83 GSGRGPSS--------------------SDRRGGYG-------GGG----AG-----GAGGA--------GAG--AG--- 113 (289)
Q Consensus 83 ~~~~~~~~--------------------~~~~~~~~-------~~~----~~-----~~~~~--------~~~--~~--- 113 (289)
...-.... .+....+. .-. .+ .-+.. ... .+
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 54211100 00000000 000 00 00000 000 00
Q ss_pred ---CCCCC---CCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEe
Q 022981 114 ---AGRFG---ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVD 187 (289)
Q Consensus 114 ---~~~~~---~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~ 187 (289)
.+... .....+.+|||.|||+++++++|.++|.+||.|.++.|+.++. |+.+.|.|||.
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~---------------T~~skGtAFv~ 340 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKD---------------TGHSKGTAFVK 340 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccC---------------CCCcccceEEE
Confidence 00000 0112246999999999999999999999999999999999998 88999999999
Q ss_pred cCChHHHHHHHHhcC-----C-cccCCccccceeeeeccC
Q 022981 188 YTNPEDMKYAIRKLD-----D-TEFRNPWARGRITVKRYD 221 (289)
Q Consensus 188 f~~~~~a~~a~~~~~-----~-~~~~~~~~g~~i~v~~~~ 221 (289)
|.+..+|..||..-. | ..+. |+.|.|..+-
T Consensus 341 Fkt~~~~~~ci~~Aspa~e~g~~ll~----GR~Lkv~~Av 376 (678)
T KOG0127|consen 341 FKTQIAAQNCIEAASPASEDGSVLLD----GRLLKVTLAV 376 (678)
T ss_pred eccHHHHHHHHHhcCccCCCceEEEe----ccEEeeeecc
Confidence 999999999998662 2 3333 7888887654
No 24
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=3.2e-23 Score=179.96 Aligned_cols=164 Identities=21% Similarity=0.259 Sum_probs=139.9
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcC-CeeEEEEccC----CCCCceEEEEEccHHHHHHHHHHhC--CceeCCceEE
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYG-RILDIELKIP----PRPPCYCFVEFENARDAEDAIRGRD--GYNFDGCRLR 76 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G-~i~~v~~~~~----~~~~g~afV~f~~~~~A~~A~~~l~--g~~~~g~~l~ 76 (289)
..++.|||||||.+.++++|.+.|++.+ -|.+|.|... .+++|||||+|++...|..|-..|- ...+.|+.+.
T Consensus 162 van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~t 241 (506)
T KOG0117|consen 162 VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAIT 241 (506)
T ss_pred eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcce
Confidence 5789999999999999999999999987 5777877542 4789999999999999999998883 3557899999
Q ss_pred EEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEE
Q 022981 77 VELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEV 156 (289)
Q Consensus 77 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i 156 (289)
|.|+.+..... .........|||.||+..+|++.|+++|.+||.|+.|+.
T Consensus 242 VdWAep~~e~d------------------------------ed~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk 291 (506)
T KOG0117|consen 242 VDWAEPEEEPD------------------------------EDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKK 291 (506)
T ss_pred eeccCcccCCC------------------------------hhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeec
Confidence 99998762111 112344568999999999999999999999999998887
Q ss_pred eeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccCCCC
Q 022981 157 SRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSP 224 (289)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~~~~ 224 (289)
++ -||||.|.+.++|.+|++.++++.+. |..|.|..++...
T Consensus 292 ~r-----------------------DYaFVHf~eR~davkAm~~~ngkeld----G~~iEvtLAKP~~ 332 (506)
T KOG0117|consen 292 PR-----------------------DYAFVHFAEREDAVKAMKETNGKELD----GSPIEVTLAKPVD 332 (506)
T ss_pred cc-----------------------ceeEEeecchHHHHHHHHHhcCceec----CceEEEEecCChh
Confidence 75 38999999999999999999999999 9999999887544
No 25
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=1.2e-23 Score=178.34 Aligned_cols=175 Identities=20% Similarity=0.317 Sum_probs=147.7
Q ss_pred CeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCC
Q 022981 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (289)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (289)
+.||||.|.+.+.++.|+..|..||+|+.|.+.|| ++.+|||||+|+-+|.|+.|++.|||.+++|+.|+|.....-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 67999999999999999999999999999999775 688999999999999999999999999999999999854432
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCC
Q 022981 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGW 163 (289)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~ 163 (289)
..-.+ --+........-++|||..+.++++++||+..|+.||+|.+|.+.+.+.+
T Consensus 194 pQAQp------------------------iID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~- 248 (544)
T KOG0124|consen 194 PQAQP------------------------IIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTG- 248 (544)
T ss_pred cccch------------------------HHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCC-
Confidence 10000 00000011234558999999999999999999999999999999999884
Q ss_pred CchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccCCCC
Q 022981 164 QSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSP 224 (289)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~~~~ 224 (289)
+..+||+||+|.+.....+|+..||-..++ |..++|-+.-.+|
T Consensus 249 --------------~~HkGyGfiEy~n~qs~~eAiasMNlFDLG----GQyLRVGk~vTPP 291 (544)
T KOG0124|consen 249 --------------RGHKGYGFIEYNNLQSQSEAIASMNLFDLG----GQYLRVGKCVTPP 291 (544)
T ss_pred --------------CCccceeeEEeccccchHHHhhhcchhhcc----cceEecccccCCC
Confidence 477999999999999999999999999998 8999887765443
No 26
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=2.6e-23 Score=168.47 Aligned_cols=163 Identities=39% Similarity=0.687 Sum_probs=137.2
Q ss_pred CeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCCCCC
Q 022981 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGR 86 (289)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~ 86 (289)
..|||++||+.+.+.+|+.||..||.|.+|.++ .||+||+|.++.+|..|+..||+..|.|..+.|+++....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-----~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~-- 74 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-----NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR-- 74 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-----cccceeccCchhhhhcccchhcCceecceeeeeecccccc--
Confidence 468999999999999999999999999999887 6899999999999999999999999999889999987541
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCc
Q 022981 87 GPSSSDRRGGYGGGGAGGAGGAGAGA-GAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQS 165 (289)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~ 165 (289)
..+ +.+.++... +.....++..+.+.+.|.+++..+.+++|.++|..+|.+....+.
T Consensus 75 ~~~--------------g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~-------- 132 (216)
T KOG0106|consen 75 RGR--------------GRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR-------- 132 (216)
T ss_pred ccc--------------CCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh--------
Confidence 100 000000111 244566778888999999999999999999999999999654441
Q ss_pred hhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeee
Q 022981 166 PAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 217 (289)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v 217 (289)
.+++||+|...++|..|+..+++..+. ++.|.+
T Consensus 133 ---------------~~~~~v~Fs~~~da~ra~~~l~~~~~~----~~~l~~ 165 (216)
T KOG0106|consen 133 ---------------RNFAFVEFSEQEDAKRALEKLDGKKLN----GRRISV 165 (216)
T ss_pred ---------------ccccceeehhhhhhhhcchhccchhhc----Cceeee
Confidence 468999999999999999999999999 899998
No 27
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.88 E-value=3.6e-22 Score=182.32 Aligned_cols=169 Identities=24% Similarity=0.424 Sum_probs=144.2
Q ss_pred EEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc--CC----CCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccC
Q 022981 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PP----RPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (289)
Q Consensus 9 l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~--~~----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 82 (289)
|||.||++++|.++|...|...|.|+.+.|.. ++ .+.|||||+|.++++|+.|++.|+|+.|+|+.|.|.++..
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~ 597 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISEN 597 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccC
Confidence 99999999999999999999999999998843 32 2349999999999999999999999999999999999983
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC
Q 022981 83 GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG 162 (289)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~ 162 (289)
.. .. ..+...+.....+.|.|.|||+.++..+|+++|..||.|..+.|++. .+
T Consensus 598 k~--~~------------------------~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK-~~ 650 (725)
T KOG0110|consen 598 KP--AS------------------------TVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKK-IG 650 (725)
T ss_pred cc--cc------------------------ccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchh-hc
Confidence 21 00 01122333444679999999999999999999999999999999987 22
Q ss_pred CCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccCC
Q 022981 163 WQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 222 (289)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~~ 222 (289)
.+..+|||||+|.++.+|..|++.|..+.+. |+.|.++.+..
T Consensus 651 --------------k~a~rGF~Fv~f~t~~ea~nA~~al~STHly----GRrLVLEwA~~ 692 (725)
T KOG0110|consen 651 --------------KGAHRGFGFVDFLTPREAKNAFDALGSTHLY----GRRLVLEWAKS 692 (725)
T ss_pred --------------chhhccceeeeccCcHHHHHHHHhhccccee----chhhheehhcc
Confidence 3456899999999999999999999999988 99999998763
No 28
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=3.3e-21 Score=171.50 Aligned_cols=152 Identities=26% Similarity=0.402 Sum_probs=138.1
Q ss_pred CeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCCCCC
Q 022981 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGR 86 (289)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~ 86 (289)
..|||| +++|+.+|.++|+.+|+|..+++..+-.+.|||||.|.++++|++||..||...+.|++|.|.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd--- 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD--- 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC---
Confidence 469998 99999999999999999999999554238999999999999999999999999999999999999744
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCch
Q 022981 87 GPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSP 166 (289)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~ 166 (289)
...|||.||+++++..+|.++|+.||.|.+|.+..+..|
T Consensus 76 -------------------------------------~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g---- 114 (369)
T KOG0123|consen 76 -------------------------------------PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG---- 114 (369)
T ss_pred -------------------------------------CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC----
Confidence 012999999999999999999999999999999999885
Q ss_pred hHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccCCC
Q 022981 167 AMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 223 (289)
Q Consensus 167 ~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~~~ 223 (289)
++|| ||+|++.++|.+|++.++|..+. +..|-|..+.+.
T Consensus 115 -------------~kg~-FV~f~~e~~a~~ai~~~ng~ll~----~kki~vg~~~~~ 153 (369)
T KOG0123|consen 115 -------------SKGY-FVQFESEESAKKAIEKLNGMLLN----GKKIYVGLFERK 153 (369)
T ss_pred -------------ceee-EEEeCCHHHHHHHHHHhcCcccC----CCeeEEeeccch
Confidence 6899 99999999999999999999999 888888776543
No 29
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=1.3e-20 Score=145.03 Aligned_cols=79 Identities=27% Similarity=0.399 Sum_probs=73.4
Q ss_pred CcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcC
Q 022981 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLD 202 (289)
Q Consensus 123 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~ 202 (289)
..++|||+||+..+++.||..+|..||+|..++|...+. |||||+|+++.+|+.|+..|+
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPP--------------------GfAFVEFed~RDA~DAvr~LD 68 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPP--------------------GFAFVEFEDPRDAEDAVRYLD 68 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCC--------------------CceEEeccCcccHHHHHhhcC
Confidence 357999999999999999999999999999999999777 699999999999999999999
Q ss_pred CcccCCccccceeeeeccCCCCC
Q 022981 203 DTEFRNPWARGRITVKRYDRSPS 225 (289)
Q Consensus 203 ~~~~~~~~~g~~i~v~~~~~~~~ 225 (289)
|+.+. |..|+|+.....+.
T Consensus 69 G~~~c----G~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 69 GKDIC----GSRIRVELSTGRPR 87 (195)
T ss_pred Ccccc----CceEEEEeecCCcc
Confidence 99999 99999999875554
No 30
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=2.5e-20 Score=165.92 Aligned_cols=171 Identities=27% Similarity=0.427 Sum_probs=148.4
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC-CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccC
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 82 (289)
+....|||.||+++++..+|.++|+.||.|..|++..+ ..++|| ||+|+++++|++|+..|||..+.|+.|.|.....
T Consensus 74 rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 74 RDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred cCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 34445999999999999999999999999999999765 348999 9999999999999999999999999999999887
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC
Q 022981 83 GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG 162 (289)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~ 162 (289)
...+...... .....+.++|.|++.+++++.|.+.|..+|.|..+.++.+..+
T Consensus 153 ~~er~~~~~~---------------------------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g 205 (369)
T KOG0123|consen 153 KEEREAPLGE---------------------------YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIG 205 (369)
T ss_pred hhhhcccccc---------------------------hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCC
Confidence 6444322211 2334558899999999999999999999999999999998875
Q ss_pred CCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccCC
Q 022981 163 WQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 222 (289)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~~ 222 (289)
.+++|+||+|+++++|..|++.+++..+. +..+.|..+..
T Consensus 206 ----------------~~~~~gfv~f~~~e~a~~av~~l~~~~~~----~~~~~V~~aqk 245 (369)
T KOG0123|consen 206 ----------------KSKGFGFVNFENPEDAKKAVETLNGKIFG----DKELYVGRAQK 245 (369)
T ss_pred ----------------CCCCccceeecChhHHHHHHHhccCCcCC----ccceeeccccc
Confidence 67899999999999999999999999998 77777777654
No 31
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=1.1e-20 Score=154.53 Aligned_cols=143 Identities=27% Similarity=0.401 Sum_probs=123.1
Q ss_pred CCCCCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 1 m~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
|.+++-+||||+||..++||+-|..||++.|+|+.++|+.+ .|+|.++
T Consensus 1 ~~~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~--------------------------------e~~v~wa 48 (321)
T KOG0148|consen 1 NGSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD--------------------------------ELKVNWA 48 (321)
T ss_pred CCCCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh--------------------------------hhccccc
Confidence 56788899999999999999999999999999999999854 4666666
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC
Q 022981 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (289)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~ 160 (289)
.....+ + .+.......+||+.|...++-++|++.|.+||+|..++|++|.
T Consensus 49 ~~p~nQ--s----------------------------k~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~ 98 (321)
T KOG0148|consen 49 TAPGNQ--S----------------------------KPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDM 98 (321)
T ss_pred cCcccC--C----------------------------CCccccceeEEehhcchhcchHHHHHHhccccccccceEeecc
Confidence 543111 1 1111123479999999999999999999999999999999999
Q ss_pred CCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccCCCC
Q 022981 161 EGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSP 224 (289)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~~~~ 224 (289)
. |++++||+||.|.+.++|+.||..|+|..++ ++.|+-..+.+.+
T Consensus 99 ~---------------T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG----~R~IRTNWATRKp 143 (321)
T KOG0148|consen 99 N---------------TGKSKGYGFVSFPNKEDAENAIQQMNGQWLG----RRTIRTNWATRKP 143 (321)
T ss_pred c---------------CCcccceeEEeccchHHHHHHHHHhCCeeec----cceeeccccccCc
Confidence 8 8899999999999999999999999999999 8999998888776
No 32
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.83 E-value=2.3e-19 Score=139.71 Aligned_cols=80 Identities=25% Similarity=0.488 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
..+++|||+|||+++++++|+++|++||+|.+|.|+. +++++|||||+|.+.++|+.||+.||+..|.|+.|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 4578999999999999999999999999999999965 4678999999999999999999999999999999999999
Q ss_pred cCC
Q 022981 81 HGG 83 (289)
Q Consensus 81 ~~~ 83 (289)
...
T Consensus 112 ~~~ 114 (144)
T PLN03134 112 NDR 114 (144)
T ss_pred CcC
Confidence 865
No 33
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.83 E-value=1.3e-18 Score=162.28 Aligned_cols=79 Identities=24% Similarity=0.426 Sum_probs=73.4
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
..++|||+|||+++++++|+++|+.||.|..+.|..+ +.++|||||+|.+.++|.+|+..||+..|+|+.|.|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 4578999999999999999999999999999999664 5789999999999999999999999999999999999988
Q ss_pred CC
Q 022981 82 GG 83 (289)
Q Consensus 82 ~~ 83 (289)
..
T Consensus 283 ~p 284 (612)
T TIGR01645 283 TP 284 (612)
T ss_pred CC
Confidence 53
No 34
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=9.2e-20 Score=157.93 Aligned_cols=80 Identities=28% Similarity=0.410 Sum_probs=72.5
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC--CCCCceEEEEEccHHHHHHHHHHhCCce-eCC--ceEEEEE
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYN-FDG--CRLRVEL 79 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~l~v~~ 79 (289)
+++.|||+.|++.+||.||+++|++||.|++|.|..+ +.++|+|||.|.+.+.|..||+.|||.. +.| .+|.|.|
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkF 202 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKF 202 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEe
Confidence 4788999999999999999999999999999999875 6899999999999999999999999854 455 7899999
Q ss_pred ccCCC
Q 022981 80 AHGGS 84 (289)
Q Consensus 80 ~~~~~ 84 (289)
+....
T Consensus 203 ADtqk 207 (510)
T KOG0144|consen 203 ADTQK 207 (510)
T ss_pred cccCC
Confidence 98664
No 35
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.82 E-value=1.2e-18 Score=140.08 Aligned_cols=196 Identities=19% Similarity=0.257 Sum_probs=146.0
Q ss_pred CCCCCCCeEEEcCCCCCccHHHHHH----HHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEE
Q 022981 1 MSGRFSRTIYVGNLPSDIREYEVED----LFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (289)
Q Consensus 1 m~~~~~~~l~V~nLp~~~t~~~L~~----~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 76 (289)
|+..++.||||.||+..+..++|+. +|++||.|.+|....+.+.+|-|||.|.+.+.|-.|+..|+|..|.|++|+
T Consensus 4 ~~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 4 MSVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred cccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 4457788999999999999999999 999999999999988889999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCCC----CCCCCCCCCC-------CCCCC--CC---CCCCCCCCCCCCCCCcceeeecCCCCCCCHHH
Q 022981 77 VELAHGGSGRGPSSS----DRRGGYGGGG-------AGGAG--GA---GAGAGAGRFGISRHSEYRVIVRGLPSSASWQD 140 (289)
Q Consensus 77 v~~~~~~~~~~~~~~----~~~~~~~~~~-------~~~~~--~~---~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~ 140 (289)
|+||+....-..+.. .....+.... ....+ .. ..-+.+. ......+...+++.|||..++.+.
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~-~~~~~ppn~ilf~~niP~es~~e~ 162 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPF-LAQMAPPNNILFLTNIPSESESEM 162 (221)
T ss_pred eecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCc-cccCCCCceEEEEecCCcchhHHH
Confidence 999986542111100 0000000000 00000 00 0000000 123345667899999999999999
Q ss_pred HHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeecc
Q 022981 141 LKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 220 (289)
Q Consensus 141 l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~ 220 (289)
+..+|.+|.-...+.+..... +.|||+|.+...|..|...+.+..+.. ...+.+..+
T Consensus 163 l~~lf~qf~g~keir~i~~~~--------------------~iAfve~~~d~~a~~a~~~lq~~~it~---~~~m~i~~a 219 (221)
T KOG4206|consen 163 LSDLFEQFPGFKEIRLIPPRS--------------------GIAFVEFLSDRQASAAQQALQGFKITK---KNTMQITFA 219 (221)
T ss_pred HHHHHhhCcccceeEeccCCC--------------------ceeEEecchhhhhHHHhhhhccceecc---CceEEeccc
Confidence 999999999888888877655 689999999999999999999888762 444554443
No 36
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=7e-19 Score=135.44 Aligned_cols=78 Identities=45% Similarity=0.715 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCC
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (289)
.-.+.||||||+..+++.||+.+|..||+|..|+|.. .++|||||||+++.+|+.|+..|+|..|.|..|.|+++...
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr--nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR--NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee--cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 4478999999999999999999999999999999965 45899999999999999999999999999999999999855
No 37
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.82 E-value=1.2e-19 Score=156.30 Aligned_cols=172 Identities=17% Similarity=0.286 Sum_probs=145.6
Q ss_pred CCCCCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEE
Q 022981 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (289)
Q Consensus 1 m~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 77 (289)
|+....+.|||++|+.+++++.|++.|.+||+|.+|.++.+ ++++||+||+|++++.+.++|. .....|+|+.|.+
T Consensus 1 ~~~~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~ 79 (311)
T KOG4205|consen 1 SESGESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEP 79 (311)
T ss_pred CCccCCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccc
Confidence 44568899999999999999999999999999999999764 6889999999999999999998 6678899999999
Q ss_pred EEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEe
Q 022981 78 ELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVS 157 (289)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~ 157 (289)
..+.+....... ........|||++||..++++++++.|.++|.|..+.++
T Consensus 80 k~av~r~~~~~~-----------------------------~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~ 130 (311)
T KOG4205|consen 80 KRAVSREDQTKV-----------------------------GRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIM 130 (311)
T ss_pred eeccCccccccc-----------------------------ccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEe
Confidence 988866211110 001145689999999999999999999999999999999
Q ss_pred eCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccCC
Q 022981 158 RDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 222 (289)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~~ 222 (289)
.+.. +..+++|+||.|.+.+.+.+++. .+-..+. +..+.|..|..
T Consensus 131 ~d~~---------------~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~----gk~vevkrA~p 175 (311)
T KOG4205|consen 131 YDKT---------------TSRPRGFGFVTFDSEDSVDKVTL-QKFHDFN----GKKVEVKRAIP 175 (311)
T ss_pred eccc---------------ccccccceeeEeccccccceecc-cceeeec----CceeeEeeccc
Confidence 9888 67889999999999999888876 5666666 78888888764
No 38
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.81 E-value=1.6e-20 Score=167.41 Aligned_cols=177 Identities=22% Similarity=0.291 Sum_probs=146.0
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
+..+|+|+--|+..+++-+|.+||+.+|+|.+|.++.+ +.++|.|||+|.+.+.+..||. |.|..+.|.+|.|+..
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLS 255 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEeccc
Confidence 45678888888989999999999999999999999765 5889999999999999999998 9999999999999987
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC
Q 022981 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (289)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~ 160 (289)
.....+.......- . ++.... +-..|+|+||..+++++.|...|+.||.|..+.+.++.
T Consensus 256 Eaeknr~a~~s~a~---~---------------~k~~~~---p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~ 314 (549)
T KOG0147|consen 256 EAEKNRAANASPAL---Q---------------GKGFTG---PMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDS 314 (549)
T ss_pred HHHHHHHHhccccc---c---------------cccccc---chhhhhhcccccCchHHHHhhhccCcccceeeeecccc
Confidence 65422211111000 0 000111 11128999999999999999999999999999999988
Q ss_pred CCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccC
Q 022981 161 EGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~ 221 (289)
. ||.++|||||+|.+.++|.+|++.|||.++. |+.|+|....
T Consensus 315 ~---------------tG~skgfGfi~f~~~~~ar~a~e~lngfelA----Gr~ikV~~v~ 356 (549)
T KOG0147|consen 315 E---------------TGRSKGFGFITFVNKEDARKALEQLNGFELA----GRLIKVSVVT 356 (549)
T ss_pred c---------------cccccCcceEEEecHHHHHHHHHHhccceec----CceEEEEEee
Confidence 7 7899999999999999999999999998888 8999877543
No 39
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=7.5e-19 Score=143.71 Aligned_cols=198 Identities=22% Similarity=0.302 Sum_probs=146.7
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc--CCCCCceEEEEEccHHHHHHHHHHhCCce-eCC--ceEEEEE
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYN-FDG--CRLRVEL 79 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~l~v~~ 79 (289)
+.+.||||-|.+.-.|||++.+|..||.|.+|.+.. ++.+||+|||.|.+.-+|+.||..|+|.. +.| ..|.|++
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 568899999999999999999999999999999965 67899999999999999999999999854 333 7799999
Q ss_pred ccCCCCCCCC--------------------------------------------C-------------------------
Q 022981 80 AHGGSGRGPS--------------------------------------------S------------------------- 90 (289)
Q Consensus 80 ~~~~~~~~~~--------------------------------------------~------------------------- 90 (289)
+.....+.-. .
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 8755410000 0
Q ss_pred --CCCCCCCCCCC------------CCCCCC------------------------CCCCCC-------------------
Q 022981 91 --SDRRGGYGGGG------------AGGAGG------------------------AGAGAG------------------- 113 (289)
Q Consensus 91 --~~~~~~~~~~~------------~~~~~~------------------------~~~~~~------------------- 113 (289)
-...+...... -+..+. ..+.+.
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence 00000000000 000000 000000
Q ss_pred CCCCC-----------------CCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhc
Q 022981 114 AGRFG-----------------ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFL 176 (289)
Q Consensus 114 ~~~~~-----------------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~ 176 (289)
+..+. ..-..+|+|||--||.+..+.+|.++|-.||.|.+.+|..|..
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRA--------------- 322 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRA--------------- 322 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhc---------------
Confidence 00000 0015578999999999999999999999999999999999888
Q ss_pred ccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccC
Q 022981 177 CVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 177 ~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~ 221 (289)
|+.++.|+||.|+++..|+.||..|||..++ =..|+|...+
T Consensus 323 TNQSKCFGFVSfDNp~SaQaAIqAMNGFQIG----MKRLKVQLKR 363 (371)
T KOG0146|consen 323 TNQSKCFGFVSFDNPASAQAAIQAMNGFQIG----MKRLKVQLKR 363 (371)
T ss_pred cccccceeeEecCCchhHHHHHHHhcchhhh----hhhhhhhhcC
Confidence 7799999999999999999999999999998 6677776543
No 40
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.80 E-value=1.8e-18 Score=136.47 Aligned_cols=80 Identities=34% Similarity=0.521 Sum_probs=74.4
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
+...+|.|.||.+.|+.++|..+|++||.|-+|+|..+ ..++|||||.|.+..+|++||++|+|.+|+|+.|.|++|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 34578999999999999999999999999999999664 688999999999999999999999999999999999999
Q ss_pred cCC
Q 022981 81 HGG 83 (289)
Q Consensus 81 ~~~ 83 (289)
.-.
T Consensus 91 ryg 93 (256)
T KOG4207|consen 91 RYG 93 (256)
T ss_pred hcC
Confidence 854
No 41
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.78 E-value=2.6e-18 Score=153.36 Aligned_cols=190 Identities=24% Similarity=0.350 Sum_probs=134.7
Q ss_pred CeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCC
Q 022981 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (289)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (289)
..||||||.+++++++|+.+|+.||.|..|.+.. +|.++||+||+|.+.++|.+|+..|||..|.|+.|+|......
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 3499999999999999999999999999999965 4899999999999999999999999999999999999877654
Q ss_pred CCCCCC---CCCCC----CCCCCCCCCCC-------CCCC---------------------CCCCC--CCCCCCC-----
Q 022981 84 SGRGPS---SSDRR----GGYGGGGAGGA-------GGAG---------------------AGAGA--GRFGISR----- 121 (289)
Q Consensus 84 ~~~~~~---~~~~~----~~~~~~~~~~~-------~~~~---------------------~~~~~--~~~~~~~----- 121 (289)
...... ..+.. .++.-+.+|.. .+.+ .-++. .....|.
T Consensus 359 ~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~ 438 (549)
T KOG0147|consen 359 VDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPA 438 (549)
T ss_pred cccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccc
Confidence 222211 00000 01100000000 0000 00000 0011111
Q ss_pred --CCcceeeecCCCCC--CC--------HHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecC
Q 022981 122 --HSEYRVIVRGLPSS--AS--------WQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYT 189 (289)
Q Consensus 122 --~~~~~l~v~nlp~~--~~--------~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~ 189 (289)
.+..++.+.|+-.. .| .+||.+.|.++|.|..|.|.++. .|++||.|.
T Consensus 439 ~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns--------------------~g~VYvrc~ 498 (549)
T KOG0147|consen 439 FDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNS--------------------AGCVYVRCP 498 (549)
T ss_pred cCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCC--------------------CceEEEecC
Confidence 44557777777322 22 26899999999999877776643 379999999
Q ss_pred ChHHHHHHHHhcCCcccCCccccceeeeecc
Q 022981 190 NPEDMKYAIRKLDDTEFRNPWARGRITVKRY 220 (289)
Q Consensus 190 ~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~ 220 (289)
+.+.|..|+..|||.+|. |+.|...+-
T Consensus 499 s~~~A~~a~~alhgrWF~----gr~Ita~~~ 525 (549)
T KOG0147|consen 499 SAEAAGTAVKALHGRWFA----GRMITAKYL 525 (549)
T ss_pred cHHHHHHHHHHHhhhhhc----cceeEEEEe
Confidence 999999999999999999 888887653
No 42
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.78 E-value=1.9e-18 Score=136.40 Aligned_cols=85 Identities=19% Similarity=0.181 Sum_probs=78.8
Q ss_pred CCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHH
Q 022981 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYA 197 (289)
Q Consensus 118 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 197 (289)
.|....-+.|.|.||.+.++.++|..+|++||.|..|.|+++.. |..++|||||.|....+|+.|
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~---------------Tr~sRgFaFVrf~~k~daedA 71 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRY---------------TRQSRGFAFVRFHDKRDAEDA 71 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccc---------------cccccceeEEEeeecchHHHH
Confidence 34445667899999999999999999999999999999999999 779999999999999999999
Q ss_pred HHhcCCcccCCccccceeeeeccC
Q 022981 198 IRKLDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 198 ~~~~~~~~~~~~~~g~~i~v~~~~ 221 (289)
++.|+|..+. |+.|+|+.+.
T Consensus 72 ~damDG~~ld----gRelrVq~ar 91 (256)
T KOG4207|consen 72 LDAMDGAVLD----GRELRVQMAR 91 (256)
T ss_pred HHhhcceeec----cceeeehhhh
Confidence 9999999999 9999999876
No 43
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.76 E-value=4.6e-17 Score=130.04 Aligned_cols=184 Identities=17% Similarity=0.239 Sum_probs=129.8
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCC----CCCceEEEEEccHHHHHHHHHHhCCceeC---CceEEE
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP----RPPCYCFVEFENARDAEDAIRGRDGYNFD---GCRLRV 77 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~----~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~v 77 (289)
.-+||||.+||.++..-+|..+|..|---+...|+.+. ..+-+|||+|.+..+|..|+..|||+.|+ +..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 46899999999999999999999999877788776654 33579999999999999999999999995 789999
Q ss_pred EEccCCCCCCCCCCCC----CCCCCCCCCCCCC---------------------CCCCCC------------CCCCCCC-
Q 022981 78 ELAHGGSGRGPSSSDR----RGGYGGGGAGGAG---------------------GAGAGA------------GAGRFGI- 119 (289)
Q Consensus 78 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~---------------------~~~~~~------------~~~~~~~- 119 (289)
++++....+....... ...+.....+-.. +..... ..+...+
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 9998654332221110 0000000000000 000000 0000000
Q ss_pred -------------CCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEE
Q 022981 120 -------------SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVV 186 (289)
Q Consensus 120 -------------~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv 186 (289)
......+|||.||..++++++|+.+|+.|--....+|..... ...||+
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g-------------------~~vaf~ 253 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGG-------------------MPVAFA 253 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCC-------------------cceEee
Confidence 011223899999999999999999999997776666654322 368999
Q ss_pred ecCChHHHHHHHHhcCCcccC
Q 022981 187 DYTNPEDMKYAIRKLDDTEFR 207 (289)
Q Consensus 187 ~f~~~~~a~~a~~~~~~~~~~ 207 (289)
+|++.+.|..|+..|+|..+.
T Consensus 254 ~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 254 DFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred cHHHHHHHHHHHHHhhcceec
Confidence 999999999999999999886
No 44
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.73 E-value=1.9e-16 Score=134.12 Aligned_cols=197 Identities=20% Similarity=0.198 Sum_probs=139.1
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeE--------EEEcc--CCCCCceEEEEEccHHHHHHHHHHhCCceeCCc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILD--------IELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC 73 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~--------v~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 73 (289)
.-++.|||.|||.++|.+++.++|++||.|.. |+|.. .|+.+|-|.+.|...+++..|+..|++..|.|+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 45677999999999999999999999998854 66654 378999999999999999999999999999999
Q ss_pred eEEEEEccCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCC-CCCCC-CCCCCCcceeeecCCC----CCCC-------H
Q 022981 74 RLRVELAHGGSGRGPSSSDRRG--GYGGGGAGGAGGAGAGA-GAGRF-GISRHSEYRVIVRGLP----SSAS-------W 138 (289)
Q Consensus 74 ~l~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~l~v~nlp----~~~~-------~ 138 (289)
.|+|+.|+-.....-....... +..--... -.....-+ .+... .......++|.+.|+- ...+ +
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~-k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlk 290 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLK-KQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLK 290 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHH-HHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHH
Confidence 9999999743100000000000 00000000 00000000 00110 1112345588888872 1222 3
Q ss_pred HHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeee
Q 022981 139 QDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 218 (289)
Q Consensus 139 ~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~ 218 (289)
++|.+.+.+||.|..+.|..... .|.+.|.|.+.++|..|++.|+|+.|. |+.|...
T Consensus 291 edl~eec~K~G~v~~vvv~d~hP-------------------dGvvtV~f~n~eeA~~ciq~m~GR~fd----gRql~A~ 347 (382)
T KOG1548|consen 291 EDLTEECEKFGQVRKVVVYDRHP-------------------DGVVTVSFRNNEEADQCIQTMDGRWFD----GRQLTAS 347 (382)
T ss_pred HHHHHHHHHhCCcceEEEeccCC-------------------CceeEEEeCChHHHHHHHHHhcCeeec----ceEEEEE
Confidence 67889999999999999886544 489999999999999999999999999 9999998
Q ss_pred ccCCCC
Q 022981 219 RYDRSP 224 (289)
Q Consensus 219 ~~~~~~ 224 (289)
..++..
T Consensus 348 i~DG~t 353 (382)
T KOG1548|consen 348 IWDGKT 353 (382)
T ss_pred EeCCcc
Confidence 887544
No 45
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.72 E-value=4.9e-16 Score=135.14 Aligned_cols=195 Identities=29% Similarity=0.461 Sum_probs=142.0
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHh-hcCCeeEEEEccC--CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFY-KYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~-~~G~i~~v~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
-.+.+||.|||+++...+|++||. +.|+|..|.|..| ++++|+|.|||+++|.+++|++.||...+.|++|.|+-..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 346699999999999999999996 5899999999775 7999999999999999999999999999999999998766
Q ss_pred CCCC--CCCCCCCCCCCCCCCCCC--C-----CCCCCCCCC------CCCCCC---------------------------
Q 022981 82 GGSG--RGPSSSDRRGGYGGGGAG--G-----AGGAGAGAG------AGRFGI--------------------------- 119 (289)
Q Consensus 82 ~~~~--~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~------~~~~~~--------------------------- 119 (289)
.... ...........|....+. + ..+++.+.. .+...+
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 5320 111111111111111000 0 000000000 000000
Q ss_pred --------CCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCCh
Q 022981 120 --------SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNP 191 (289)
Q Consensus 120 --------~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~ 191 (289)
.......+||.||.+.+....|.+.|.-.|.|..+.+..++.| .++|++.++|.++
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG----------------~s~G~~vi~y~hp 266 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEG----------------NSRGFAVIEYDHP 266 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeecccc----------------ccCCeeEEEecch
Confidence 0122337899999999999999999999999999999999886 6789999999999
Q ss_pred HHHHHHHHhcCCcccCCccccceeeeec
Q 022981 192 EDMKYAIRKLDDTEFRNPWARGRITVKR 219 (289)
Q Consensus 192 ~~a~~a~~~~~~~~~~~~~~g~~i~v~~ 219 (289)
-+|-.||..+++..+. .++..+..
T Consensus 267 veavqaIsml~~~g~~----~~~~~~Rl 290 (608)
T KOG4212|consen 267 VEAVQAISMLDRQGLF----DRRMTVRL 290 (608)
T ss_pred HHHHHHHHhhccCCCc----cccceeec
Confidence 9999999999986554 45555544
No 46
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.72 E-value=1.5e-16 Score=132.23 Aligned_cols=81 Identities=33% Similarity=0.565 Sum_probs=76.4
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEE
Q 022981 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (289)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 79 (289)
++|-+||||+-|+++++|.+|+..|+.||+|+.|.|+. +++++|||||+|+++.+...|++..+|.+|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 47889999999999999999999999999999999965 589999999999999999999999999999999999999
Q ss_pred ccCC
Q 022981 80 AHGG 83 (289)
Q Consensus 80 ~~~~ 83 (289)
-...
T Consensus 178 ERgR 181 (335)
T KOG0113|consen 178 ERGR 181 (335)
T ss_pred cccc
Confidence 8765
No 47
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.72 E-value=1.8e-16 Score=139.97 Aligned_cols=167 Identities=22% Similarity=0.253 Sum_probs=132.0
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC-CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCC
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (289)
....|.+.+||+.+|++||.+||+.| .|.++.+..+ +++.|-|||+|.+++++++|++ ++...+..+.|.|-.+...
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGA 86 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCc
Confidence 34568889999999999999999999 4888888654 8999999999999999999999 8999999999999988765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCcceeeecCCCCCCCHHHHHHHHHhcCCeeE-EEEeeCC
Q 022981 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISR--HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF-AEVSRDS 160 (289)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~-~~i~~~~ 160 (289)
+..+.... ..+. ...-.|.+.+||+.++++||.++|+-.-.|.. +-++.+.
T Consensus 87 e~d~~~~~--------------------------~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~ 140 (510)
T KOG4211|consen 87 EADWVMRP--------------------------GGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ 140 (510)
T ss_pred cccccccC--------------------------CCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC
Confidence 32111110 0111 24458999999999999999999998877766 3355555
Q ss_pred CCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeecc
Q 022981 161 EGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 220 (289)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~ 220 (289)
.+ .+.|-|||.|++.+.|+.|+. .|...++ -+.|.|.++
T Consensus 141 rg----------------R~tGEAfVqF~sqe~ae~Al~-rhre~iG----hRYIEvF~S 179 (510)
T KOG4211|consen 141 RG----------------RPTGEAFVQFESQESAEIALG-RHRENIG----HRYIEVFRS 179 (510)
T ss_pred CC----------------CcccceEEEecCHHHHHHHHH-HHHHhhc----cceEEeehh
Confidence 54 568999999999999999997 5556666 567776654
No 48
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.70 E-value=6e-17 Score=110.55 Aligned_cols=68 Identities=40% Similarity=0.764 Sum_probs=64.3
Q ss_pred EEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc--CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEE
Q 022981 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (289)
Q Consensus 9 l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 76 (289)
|||+|||+++|+++|+++|++||.|..+.+.. .+..+++|||+|.+.++|+.|++.|+|..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999999999966 367889999999999999999999999999999885
No 49
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=4.7e-17 Score=118.98 Aligned_cols=80 Identities=38% Similarity=0.554 Sum_probs=73.6
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
+.++||||+||++-|+|++|.+||+++|+|..|.|=. +..+.|||||+|...++|+.||..++|..++.++|.|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 5789999999999999999999999999999998833 3577899999999999999999999999999999999997
Q ss_pred cCC
Q 022981 81 HGG 83 (289)
Q Consensus 81 ~~~ 83 (289)
...
T Consensus 114 ~GF 116 (153)
T KOG0121|consen 114 AGF 116 (153)
T ss_pred ccc
Confidence 644
No 50
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.69 E-value=2e-15 Score=130.33 Aligned_cols=192 Identities=16% Similarity=0.184 Sum_probs=147.6
Q ss_pred CCeEEEcCCCCC-ccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCCC
Q 022981 6 SRTIYVGNLPSD-IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (289)
Q Consensus 6 ~~~l~V~nLp~~-~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 84 (289)
+..|.|.||..+ +|++-|..+|.-||.|..|+|...+ +--|+|+|.+...|+.|+..|+|..|.|+.|+|.+++...
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk--kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK--KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC--CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 578999999655 9999999999999999999997654 4789999999999999999999999999999999999776
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCC
Q 022981 85 GRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQ 164 (289)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~ 164 (289)
...+..+....++....+...-..-.-++...+...-.+..++.+.|+|..+++++++++|...|-+......-.++
T Consensus 375 vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd--- 451 (492)
T KOG1190|consen 375 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKD--- 451 (492)
T ss_pred ccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCC---
Confidence 55555444443333322221111111222333444445667999999999999999999999988876655544433
Q ss_pred chhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccC
Q 022981 165 SPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 165 ~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~ 221 (289)
+-+|++.+++.++|..|+-.+|...++. +..++|...+
T Consensus 452 ----------------~kmal~q~~sveeA~~ali~~hnh~lge---n~hlRvSFSk 489 (492)
T KOG1190|consen 452 ----------------RKMALPQLESVEEAIQALIDLHNHYLGE---NHHLRVSFSK 489 (492)
T ss_pred ----------------cceeecccCChhHhhhhccccccccCCC---CceEEEEeec
Confidence 4699999999999999999999999872 4477776653
No 51
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.69 E-value=5e-16 Score=137.68 Aligned_cols=79 Identities=29% Similarity=0.478 Sum_probs=72.1
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCC--ceEEEEE
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVEL 79 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~ 79 (289)
..++|||+|||+++|+++|+++|++||.|+.|.|+. +++++|||||+|.+.++|++||+.||+..|.+ ++|.|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 467899999999999999999999999999999965 46788999999999999999999999999876 7899999
Q ss_pred ccCC
Q 022981 80 AHGG 83 (289)
Q Consensus 80 ~~~~ 83 (289)
+...
T Consensus 272 a~~~ 275 (346)
T TIGR01659 272 AEEH 275 (346)
T ss_pred CCcc
Confidence 8865
No 52
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=99.68 E-value=5.1e-17 Score=139.37 Aligned_cols=181 Identities=17% Similarity=0.142 Sum_probs=118.7
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC------CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEE
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP------PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 77 (289)
.....|.|.||.+.+|.++++.||...|+|.++.|+.+ +.....|||.|.+...+..|.. |.+++|-++.|.|
T Consensus 5 ~~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv 83 (479)
T KOG4676|consen 5 SSLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIV 83 (479)
T ss_pred CCCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEE
Confidence 34458999999999999999999999999999999652 2334699999999999999888 9999999998888
Q ss_pred EEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----------CCCCCCCC-----------cceeeecCCCCC
Q 022981 78 ELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAG-----------RFGISRHS-----------EYRVIVRGLPSS 135 (289)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~-----------~~~l~v~nlp~~ 135 (289)
.+.-.......-.-...+. .....+.-.+.|.-++.. ....|..+ ..+++|++|+..
T Consensus 84 ~p~~~~~~p~r~af~~l~~-~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~ 162 (479)
T KOG4676|consen 84 RPYGDEVIPDRFAFVELAD-QNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISA 162 (479)
T ss_pred EecCCCCCccHHHHHhcCc-ccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhh
Confidence 8765432111000000000 000000000000000000 00011100 126899999999
Q ss_pred CCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCccc
Q 022981 136 ASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEF 206 (289)
Q Consensus 136 ~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~ 206 (289)
+...++.+.|..+|.|.+..+..... ..++.++|........|+. ++|..+
T Consensus 163 ~~l~e~~e~f~r~Gev~ya~~ask~~-------------------s~~c~~sf~~qts~~halr-~~gre~ 213 (479)
T KOG4676|consen 163 AILPESGESFERKGEVSYAHTASKSR-------------------SSSCSHSFRKQTSSKHALR-SHGRER 213 (479)
T ss_pred hcchhhhhhhhhcchhhhhhhhccCC-------------------CcchhhhHhhhhhHHHHHH-hcchhh
Confidence 99999999999999999888776544 3466688877777777765 555444
No 53
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.68 E-value=2.6e-16 Score=131.10 Aligned_cols=78 Identities=21% Similarity=0.278 Sum_probs=73.5
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCC
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (289)
..++|||+|||+.+|+++|+++|+.||+|.+|.|..++..+|||||+|.++++|+.||. |||..|.|+.|.|.++...
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 36899999999999999999999999999999998887778999999999999999997 9999999999999998755
No 54
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.67 E-value=5.6e-16 Score=144.41 Aligned_cols=134 Identities=20% Similarity=0.283 Sum_probs=100.6
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhc--CCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccC
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKY--GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~--G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 82 (289)
..++|||+||+.++++++|+++|++| |.|+.|.++ ++||||+|.+.++|++||+.||+..|.|+.|+|.++++
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-----rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp 306 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-----RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKP 306 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-----cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 45789999999999999999999999 999999876 57999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCC-CCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCee
Q 022981 83 GSGRGPSSSDRRGGYGGGGAGGAGGAGAG-AGAGR-FGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVC 152 (289)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~ 152 (289)
..... . ..+..+ .++.+... ..... ...-.....++++.|+++..+++.+.++|..+|.|.
T Consensus 307 ~~~~~--~----~~~~rg---~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~~~ 369 (578)
T TIGR01648 307 VDKKS--Y----VRYTRG---TGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGPIR 369 (578)
T ss_pred CCccc--c----cccccc---cCCCcccccccccccCcccCccccccccccccccccccchhhccccCcccc
Confidence 52111 0 001000 00000000 00001 112223466899999999999999999999998764
No 55
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.65 E-value=8.5e-16 Score=126.06 Aligned_cols=81 Identities=25% Similarity=0.245 Sum_probs=75.3
Q ss_pred CCCCCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 1 m~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
|. ....+|||+||++.+|+++|++||+.||+|.+|.|..++..++||||+|.++++|+.|+. |+|..|.++.|.|...
T Consensus 1 m~-~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~ 78 (243)
T PLN03121 1 MY-PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRW 78 (243)
T ss_pred CC-CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeC
Confidence 54 456899999999999999999999999999999999988888999999999999999997 9999999999999987
Q ss_pred cCC
Q 022981 81 HGG 83 (289)
Q Consensus 81 ~~~ 83 (289)
...
T Consensus 79 ~~y 81 (243)
T PLN03121 79 GQY 81 (243)
T ss_pred ccc
Confidence 754
No 56
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.65 E-value=3e-15 Score=116.59 Aligned_cols=88 Identities=26% Similarity=0.344 Sum_probs=79.7
Q ss_pred CCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHH
Q 022981 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAI 198 (289)
Q Consensus 119 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~ 198 (289)
......++|||+|||+.+++++|+++|.+||.|..+.|+.+.. |+.++|||||+|.+.++|+.|+
T Consensus 29 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~---------------tg~~kGfaFV~F~~~e~A~~Al 93 (144)
T PLN03134 29 SLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRE---------------TGRSRGFGFVNFNDEGAATAAI 93 (144)
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCC---------------CCCcceEEEEEECCHHHHHHHH
Confidence 3345667999999999999999999999999999999999887 7789999999999999999999
Q ss_pred HhcCCcccCCccccceeeeeccCCCCC
Q 022981 199 RKLDDTEFRNPWARGRITVKRYDRSPS 225 (289)
Q Consensus 199 ~~~~~~~~~~~~~g~~i~v~~~~~~~~ 225 (289)
+.|++..+. ++.|+|+.+...+.
T Consensus 94 ~~lng~~i~----Gr~l~V~~a~~~~~ 116 (144)
T PLN03134 94 SEMDGKELN----GRHIRVNPANDRPS 116 (144)
T ss_pred HHcCCCEEC----CEEEEEEeCCcCCC
Confidence 999999999 89999998875443
No 57
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.63 E-value=8.7e-15 Score=134.45 Aligned_cols=199 Identities=22% Similarity=0.266 Sum_probs=141.3
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCC
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (289)
...+.|+|+|||..+..++|..+|..||+|..+.|...| --|+|+|.++.+|.+|+..|....+...+|.+.|+...
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G---~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~d 459 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGG---TGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPED 459 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecCccc---ceeeeeecCccchHHHHHHhchhhhccCccccccChhh
Confidence 345789999999999999999999999999999554222 25899999999999999999999999999999988644
Q ss_pred CCCCC-CCCCCCCCCCCCCC--CCCC--CCCCCCCCCCC---------CCC-CCCcceeeecCCCCCCCHHHHHHHHHhc
Q 022981 84 SGRGP-SSSDRRGGYGGGGA--GGAG--GAGAGAGAGRF---------GIS-RHSEYRVIVRGLPSSASWQDLKDHMRKA 148 (289)
Q Consensus 84 ~~~~~-~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~---------~~~-~~~~~~l~v~nlp~~~~~~~l~~~f~~~ 148 (289)
.-... ..-.-.+....... .... ...+.-..... ... ....+.|||.||++.++.++|..+|.+.
T Consensus 460 vf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~ 539 (725)
T KOG0110|consen 460 VFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQ 539 (725)
T ss_pred hccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhc
Confidence 22211 10000000000000 0000 00000000000 001 1222349999999999999999999999
Q ss_pred CCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccC
Q 022981 149 GDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 149 g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~ 221 (289)
|.|..+.|.+.++... --.+.|||||+|.++++|+.|++.|+|+.+. |..|.++...
T Consensus 540 G~VlS~~I~kkkd~~~------------k~lSmGfgFVEF~~~e~A~~a~k~lqgtvld----GH~l~lk~S~ 596 (725)
T KOG0110|consen 540 GTVLSIEISKKKDPAN------------KYLSMGFGFVEFAKPESAQAALKALQGTVLD----GHKLELKISE 596 (725)
T ss_pred CeEEEEEEeccccccc------------cccccceeEEEecCHHHHHHHHHHhcCceec----CceEEEEecc
Confidence 9999999987665310 0134599999999999999999999999999 8888888876
No 58
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=2.2e-15 Score=122.11 Aligned_cols=80 Identities=35% Similarity=0.526 Sum_probs=75.4
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.++.+|-|.||+.+|++++|++||.+||.|..|+|.. +|.++|||||.|...++|++||..|||.-++.-.|.|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 4678999999999999999999999999999999954 6899999999999999999999999999999999999999
Q ss_pred cCC
Q 022981 81 HGG 83 (289)
Q Consensus 81 ~~~ 83 (289)
++.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 864
No 59
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.60 E-value=3.8e-15 Score=101.76 Aligned_cols=68 Identities=29% Similarity=0.605 Sum_probs=61.2
Q ss_pred EEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC--CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEE
Q 022981 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (289)
Q Consensus 9 l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 76 (289)
|||+|||+.+++++|.++|+.||.|..+.+... +..+++|||+|.++++|..|+..+++..|.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999999654 56789999999999999999999999999999874
No 60
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=7.5e-15 Score=103.52 Aligned_cols=80 Identities=34% Similarity=0.445 Sum_probs=74.3
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCC
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (289)
+.++.|||.|||+.+|.+++.++|.+||.|..|.|=.+...+|.|||.|++..+|.+|+..|+|..+.++.|.|-+-.+.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 45678999999999999999999999999999999777777999999999999999999999999999999999987644
No 61
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=6.2e-15 Score=133.34 Aligned_cols=187 Identities=19% Similarity=0.299 Sum_probs=135.0
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
..+.|||++||..++++++.++...||++..+.+.. ++.++||||.+|.++..+..|++.|||+.+.+..|.|+.+.
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 456799999999999999999999999999999855 36889999999999999999999999999999999999988
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCcceeeecCC--CCCCC--------HHHHHHHHHhcC
Q 022981 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGR--FGISRHSEYRVIVRGL--PSSAS--------WQDLKDHMRKAG 149 (289)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~v~nl--p~~~~--------~~~l~~~f~~~g 149 (289)
............... +-.+-.. ......+...|.+.|+ |.++. .|+|++.|.+||
T Consensus 368 ~g~~~~~~~~~~~~~-------------~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g 434 (500)
T KOG0120|consen 368 VGASNANVNFNISQS-------------QVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFG 434 (500)
T ss_pred ccchhccccCCcccc-------------ccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccC
Confidence 653222111110000 0000000 0111122223333333 11111 146888999999
Q ss_pred CeeEEEEeeC-CCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccC
Q 022981 150 DVCFAEVSRD-SEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 150 ~v~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~ 221 (289)
.|..|.|+++ ..+... -..|..||+|.+.+++++|.+.|+|.+|. ++.+...+.+
T Consensus 435 ~v~~v~ipr~~~~~~~~-------------~G~GkVFVefas~ed~qrA~~~L~GrKF~----nRtVvtsYyd 490 (500)
T KOG0120|consen 435 AVRSVEIPRPYPDENPV-------------PGTGKVFVEFADTEDSQRAMEELTGRKFA----NRTVVASYYD 490 (500)
T ss_pred ceeEEecCCCCCCCCcC-------------CCcccEEEEecChHHHHHHHHHccCceeC----CcEEEEEecC
Confidence 9999999998 443322 33589999999999999999999999999 7877766554
No 62
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=2.4e-14 Score=119.27 Aligned_cols=81 Identities=23% Similarity=0.262 Sum_probs=76.3
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhc
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKL 201 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 201 (289)
.+-++|||+-|++++++..|+..|..||+|+.+.|+.+.- ||+++|||||+|++..++..|.+..
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~v---------------TgkskGYAFIeye~erdm~~AYK~a 163 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKV---------------TGKSKGYAFIEYEHERDMKAAYKDA 163 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecc---------------cCCccceEEEEeccHHHHHHHHHhc
Confidence 5667999999999999999999999999999999999988 8899999999999999999999999
Q ss_pred CCcccCCccccceeeeeccC
Q 022981 202 DDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 202 ~~~~~~~~~~g~~i~v~~~~ 221 (289)
+|.++. ++.|.|+...
T Consensus 164 dG~~Id----grri~VDvER 179 (335)
T KOG0113|consen 164 DGIKID----GRRILVDVER 179 (335)
T ss_pred cCceec----CcEEEEEecc
Confidence 999999 8999888654
No 63
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=4.9e-15 Score=124.77 Aligned_cols=80 Identities=26% Similarity=0.470 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC-CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccC
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 82 (289)
...++|+|.|||+..-+-||+.+|.+||+|.+|.|+.. ..+|||+||+|++.+||++|-++|||.++.||+|.|..+..
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 45578999999999999999999999999999999764 57899999999999999999999999999999999999876
Q ss_pred C
Q 022981 83 G 83 (289)
Q Consensus 83 ~ 83 (289)
.
T Consensus 174 r 174 (376)
T KOG0125|consen 174 R 174 (376)
T ss_pred h
Confidence 5
No 64
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.57 E-value=1.5e-13 Score=119.75 Aligned_cols=76 Identities=18% Similarity=0.362 Sum_probs=65.4
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC--CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEE
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 79 (289)
.....+||+||.+.+..+.|.+.|.-.|.|..|.+-.+ +.++|||.|+|.++-+|..||..|++..+..+++.+.+
T Consensus 213 Pl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 213 PLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRL 290 (608)
T ss_pred CccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCccccceeec
Confidence 45567999999999999999999999999999888544 68899999999999999999999987666666666554
No 65
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.57 E-value=6.5e-14 Score=120.52 Aligned_cols=144 Identities=26% Similarity=0.440 Sum_probs=109.7
Q ss_pred CCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccC
Q 022981 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (289)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 82 (289)
..+|||+|||.++++++|.++|.+||.|..+.+..+ +.++|||||+|.++++|..|+..|++..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 589999999999999999999999999999999654 68999999999999999999999999999999999999763
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC
Q 022981 83 -GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (289)
Q Consensus 83 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~ 161 (289)
...+............. ...............+++.+++..+...++...|..+|.+....+.....
T Consensus 195 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (306)
T COG0724 195 ASQPRSELSNNLDASFAK------------KLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKD 262 (306)
T ss_pred ccccccccccccchhhhc------------cccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCC
Confidence 11111110000000000 00111223344566899999999999999999999999997766665544
No 66
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=8.7e-14 Score=118.80 Aligned_cols=77 Identities=25% Similarity=0.455 Sum_probs=70.4
Q ss_pred CeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCC
Q 022981 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (289)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (289)
..|||..+.++++++||+.+|+.||+|+.|.+.. ....+||+||+|.+..+...|+..||=..++|..|.|..+-..
T Consensus 211 nRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred heEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCC
Confidence 5799999999999999999999999999999954 3467999999999999999999999999999999999877643
No 67
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=4.9e-16 Score=120.46 Aligned_cols=80 Identities=28% Similarity=0.476 Sum_probs=75.4
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.++.-|||||||+++|+.||.-+|++||+|.+|.|+. ||+++||||+.|++..+...|+..|||..|.|+.|+|.+.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 5678899999999999999999999999999999965 5899999999999999999999999999999999999988
Q ss_pred cCC
Q 022981 81 HGG 83 (289)
Q Consensus 81 ~~~ 83 (289)
...
T Consensus 113 ~~Y 115 (219)
T KOG0126|consen 113 SNY 115 (219)
T ss_pred ccc
Confidence 765
No 68
>smart00362 RRM_2 RNA recognition motif.
Probab=99.55 E-value=4.2e-14 Score=96.11 Aligned_cols=71 Identities=41% Similarity=0.739 Sum_probs=65.5
Q ss_pred eEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC-CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEE
Q 022981 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (289)
Q Consensus 8 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 78 (289)
+|||+|||+.+++++|.++|.+||+|..+.+..+ +.++++|||+|.+.++|+.|+..|++..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999999999999999999999999998654 4667999999999999999999999999999998873
No 69
>PLN03213 repressor of silencing 3; Provisional
Probab=99.54 E-value=2.9e-14 Score=126.05 Aligned_cols=78 Identities=18% Similarity=0.330 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccH--HHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENA--RDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~--~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
....+||||||++.+++++|..+|..||.|.+|.|+.+.. +|||||+|... .++.+||..|||..+.|+.|+|..++
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG-RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG-RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC-CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 4567899999999999999999999999999999975433 99999999987 78999999999999999999999987
Q ss_pred C
Q 022981 82 G 82 (289)
Q Consensus 82 ~ 82 (289)
+
T Consensus 87 P 87 (759)
T PLN03213 87 E 87 (759)
T ss_pred H
Confidence 4
No 70
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=2.3e-14 Score=105.90 Aligned_cols=77 Identities=26% Similarity=0.444 Sum_probs=72.4
Q ss_pred CeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCC
Q 022981 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (289)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (289)
-.|||.++...+|+++|.+.|..||+|++|.|.. ++..+|||+|+|++.++|+.|+..|||..|.|++|.|.|+...
T Consensus 73 wIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~ 152 (170)
T KOG0130|consen 73 WIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVK 152 (170)
T ss_pred EEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEec
Confidence 4699999999999999999999999999999965 4778999999999999999999999999999999999999865
No 71
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=2.6e-14 Score=115.47 Aligned_cols=76 Identities=25% Similarity=0.381 Sum_probs=69.4
Q ss_pred CCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccC
Q 022981 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (289)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 82 (289)
-+.||||+|++++..++|+++|++||+|++..|+. ++++|||+||+|.+.++|.+|++ -.+-.|+||+..|.++.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~-dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACK-DPNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhc-CCCCcccccccccchhhh
Confidence 46799999999999999999999999999998865 47999999999999999999999 456789999999999875
No 72
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.8e-14 Score=122.46 Aligned_cols=80 Identities=24% Similarity=0.388 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.|.+.|||..|.|-||.+||.-+|+.||+|..|.++. ++.+..||||+|++.+++++|+..|++..|+++.|+|.|+
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 7899999999999999999999999999999999966 4778899999999999999999999999999999999999
Q ss_pred cCC
Q 022981 81 HGG 83 (289)
Q Consensus 81 ~~~ 83 (289)
...
T Consensus 317 QSV 319 (479)
T KOG0415|consen 317 QSV 319 (479)
T ss_pred hhh
Confidence 865
No 73
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=5.9e-14 Score=112.12 Aligned_cols=80 Identities=34% Similarity=0.544 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
...+|||||+|..++++.-|...|=.||.|.+|.+..| .+.+|||||+|...|+|..||..||+..|.|+.|.|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 45689999999999999999999999999999999764 688999999999999999999999999999999999999
Q ss_pred cCC
Q 022981 81 HGG 83 (289)
Q Consensus 81 ~~~ 83 (289)
++.
T Consensus 88 kP~ 90 (298)
T KOG0111|consen 88 KPE 90 (298)
T ss_pred CCc
Confidence 976
No 74
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.48 E-value=1.4e-12 Score=112.97 Aligned_cols=188 Identities=18% Similarity=0.254 Sum_probs=133.8
Q ss_pred eEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeC-C-ceEEEEEccCCCC
Q 022981 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD-G-CRLRVELAHGGSG 85 (289)
Q Consensus 8 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g-~~l~v~~~~~~~~ 85 (289)
.++|.|+-+.++-|-|.++|++||.|..|.- .++...--|+|+|.+.+.|+.|...|+|..|. | +.|+|.+++-...
T Consensus 152 r~iie~m~ypVslDVLHqvFS~fG~VlKIiT-F~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~L 230 (492)
T KOG1190|consen 152 RTIIENMFYPVSLDVLHQVFSKFGFVLKIIT-FTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDL 230 (492)
T ss_pred EEEeccceeeeEHHHHHHHHhhcceeEEEEE-EecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccc
Confidence 4688999999999999999999999988743 22233446999999999999999999998884 3 6788888764321
Q ss_pred CCCCCCCCCCCCCCCCC---------------------------CCCCCCCCCCCC--CCCCCCCCCcceeeecCC-CCC
Q 022981 86 RGPSSSDRRGGYGGGGA---------------------------GGAGGAGAGAGA--GRFGISRHSEYRVIVRGL-PSS 135 (289)
Q Consensus 86 ~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~--~~~~~~~~~~~~l~v~nl-p~~ 135 (289)
-..-..++..+|..... .+...+...... +....+. ..+.|.|.|| ++.
T Consensus 231 nvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~-~n~vllvsnln~~~ 309 (492)
T KOG1190|consen 231 NVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPS-ANVVLLVSNLNEEA 309 (492)
T ss_pred eeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCC-CceEEEEecCchhc
Confidence 11111222222221110 000000000000 1111111 2567888888 577
Q ss_pred CCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCcccccee
Q 022981 136 ASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 215 (289)
Q Consensus 136 ~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i 215 (289)
+|.+.|..+|.-||.|..++|..++.. -|.|.|.+...|+-|++.|+|..+. |+.|
T Consensus 310 VT~d~LftlFgvYGdVqRVkil~nkkd--------------------~ALIQmsd~~qAqLA~~hL~g~~l~----gk~l 365 (492)
T KOG1190|consen 310 VTPDVLFTLFGVYGDVQRVKILYNKKD--------------------NALIQMSDGQQAQLAMEHLEGHKLY----GKKL 365 (492)
T ss_pred cchhHHHHHHhhhcceEEEEeeecCCc--------------------ceeeeecchhHHHHHHHHhhcceec----CceE
Confidence 899999999999999999999987663 5999999999999999999999977 8999
Q ss_pred eeeccC
Q 022981 216 TVKRYD 221 (289)
Q Consensus 216 ~v~~~~ 221 (289)
+|...+
T Consensus 366 rvt~SK 371 (492)
T KOG1190|consen 366 RVTLSK 371 (492)
T ss_pred EEeecc
Confidence 998876
No 75
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.47 E-value=4.4e-12 Score=108.74 Aligned_cols=197 Identities=13% Similarity=0.082 Sum_probs=143.1
Q ss_pred CCCCeEEEcCCCCC-ccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccC
Q 022981 4 RFSRTIYVGNLPSD-IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (289)
Q Consensus 4 ~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 82 (289)
-+...+.|.+|... ++.+.|.++|..||.|+.|+++.+. .|.|.|++.+..+.++|+..||+..+.|.+|.|.++++
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk--~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK--PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc--cceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 46788999999876 8999999999999999999998765 78999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCC-eeEEEEee
Q 022981 83 GSGRGPSSSDR---RGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGD-VCFAEVSR 158 (289)
Q Consensus 83 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~-v~~~~i~~ 158 (289)
......+.-.. ...|....+..+.. -..+..+.......+.+.|..-|.|..++++.|.++|...+. ..+++|..
T Consensus 363 ~~v~~~~pflLpDgSpSfKdys~SkNnR-Fssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp 441 (494)
T KOG1456|consen 363 NFVSPVQPFLLPDGSPSFKDYSGSKNNR-FSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFP 441 (494)
T ss_pred cccccCCceecCCCCcchhhcccccccc-cCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeec
Confidence 54322221111 11111100000000 001111122233466778999999999999999999997653 34555554
Q ss_pred CCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeecc
Q 022981 159 DSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 220 (289)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~ 220 (289)
.+.. -..-+.+||++.++|.+|+..++.+.+.++.+.-+..++..
T Consensus 442 ~kse-----------------rSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlc 486 (494)
T KOG1456|consen 442 LKSE-----------------RSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLC 486 (494)
T ss_pred cccc-----------------ccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeee
Confidence 4432 13468999999999999999999999998877766665543
No 76
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=3.3e-13 Score=109.58 Aligned_cols=89 Identities=22% Similarity=0.238 Sum_probs=81.3
Q ss_pred CCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHH
Q 022981 116 RFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMK 195 (289)
Q Consensus 116 ~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~ 195 (289)
.....+...++|.|.||+.++++.+|+++|.+||.|..+.+.+++. ||.++|||||.|.+.++|.
T Consensus 181 ~~~R~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~---------------TG~~kGFAFVtF~sRddA~ 245 (270)
T KOG0122|consen 181 SDMRERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKE---------------TGLSKGFAFVTFESRDDAA 245 (270)
T ss_pred cccccCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccc---------------cCcccceEEEEEecHHHHH
Confidence 3344566788999999999999999999999999999999999999 8999999999999999999
Q ss_pred HHHHhcCCcccCCccccceeeeeccCCC
Q 022981 196 YAIRKLDDTEFRNPWARGRITVKRYDRS 223 (289)
Q Consensus 196 ~a~~~~~~~~~~~~~~g~~i~v~~~~~~ 223 (289)
+||..|+|+-+. ...|+|+.++.+
T Consensus 246 rAI~~LnG~gyd----~LILrvEwskP~ 269 (270)
T KOG0122|consen 246 RAIADLNGYGYD----NLILRVEWSKPS 269 (270)
T ss_pred HHHHHccCcccc----eEEEEEEecCCC
Confidence 999999999988 789999887653
No 77
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.46 E-value=6.1e-13 Score=90.83 Aligned_cols=72 Identities=38% Similarity=0.741 Sum_probs=66.4
Q ss_pred eEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCC--CCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEE
Q 022981 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP--RPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (289)
Q Consensus 8 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 79 (289)
+|+|+|||+.+++++|.++|..||.|..+.+..+. ...++|||+|.+.++|..|+..+++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 58999999999999999999999999999997643 4689999999999999999999999999999999864
No 78
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.46 E-value=2.7e-13 Score=92.27 Aligned_cols=70 Identities=24% Similarity=0.417 Sum_probs=64.0
Q ss_pred eeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCccc
Q 022981 127 VIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEF 206 (289)
Q Consensus 127 l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~ 206 (289)
|||+|||..+++++|.++|.+||.|..+.+..+. ++...++|||+|.+.++|..|++.|++..+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~----------------~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~ 64 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNS----------------SGKSKGYAFVEFESEEDAEKALEELNGKKI 64 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEET----------------TSSEEEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccc----------------cccccceEEEEEcCHHHHHHHHHHcCCCEE
Confidence 7999999999999999999999999999999863 347789999999999999999999999999
Q ss_pred CCccccceee
Q 022981 207 RNPWARGRIT 216 (289)
Q Consensus 207 ~~~~~g~~i~ 216 (289)
. +..|+
T Consensus 65 ~----~~~ir 70 (70)
T PF00076_consen 65 N----GRKIR 70 (70)
T ss_dssp T----TEEEE
T ss_pred C----ccCcC
Confidence 8 77664
No 79
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.44 E-value=7.3e-13 Score=86.25 Aligned_cols=56 Identities=34% Similarity=0.584 Sum_probs=51.1
Q ss_pred HHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 23 VEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 23 L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
|.++|++||+|..|.+..+. +++|||+|.+.++|+.|+..|||..|.|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997654 699999999999999999999999999999999986
No 80
>smart00360 RRM RNA recognition motif.
Probab=99.44 E-value=6.5e-13 Score=89.82 Aligned_cols=68 Identities=41% Similarity=0.728 Sum_probs=62.4
Q ss_pred EcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEE
Q 022981 11 VGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (289)
Q Consensus 11 V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 78 (289)
|+|||..+++++|.++|.+||.|..+.+..+ +.++++|||+|.+.++|..|+..|++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6899999999999999999999999999653 5678999999999999999999999999999998873
No 81
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.43 E-value=1.6e-13 Score=117.87 Aligned_cols=190 Identities=18% Similarity=0.178 Sum_probs=132.8
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcC----CeeEEEE-cc-CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEE
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYG----RILDIEL-KI-PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G----~i~~v~~-~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 78 (289)
..-.|.+.+||+++++.|+.+||..-. ..+.|-+ .. +++..|-|||.|+.+++|+.|+. -|...++-+.|.+.
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIElF 238 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIELF 238 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHHHH
Confidence 344577899999999999999997322 3344444 33 78999999999999999999998 67777777777765
Q ss_pred EccCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCC-eeE--E
Q 022981 79 LAHGGSGRGPSSSDRRGGYGGGGAGGA-GGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGD-VCF--A 154 (289)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~-v~~--~ 154 (289)
.+...+-..--.... ...-.++ .....++++....++.....+|.+.+||+..+.|+|-++|..|.. |.. +
T Consensus 239 RSTaaEvqqvlnr~~-----s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gV 313 (508)
T KOG1365|consen 239 RSTAAEVQQVLNREV-----SEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGV 313 (508)
T ss_pred HHhHHHHHHHHHhhc-----cccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhccccee
Confidence 544221000000000 0000000 111111224455566666779999999999999999999999864 444 7
Q ss_pred EEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeecc
Q 022981 155 EVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 220 (289)
Q Consensus 155 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~ 220 (289)
++..+..| .+.|-|||+|.+.++|..|...-|.+.+. .+.|.|-..
T Consensus 314 Hmv~N~qG----------------rPSGeAFIqm~nae~a~aaaqk~hk~~mk----~RYiEvfp~ 359 (508)
T KOG1365|consen 314 HMVLNGQG----------------RPSGEAFIQMRNAERARAAAQKCHKKLMK----SRYIEVFPC 359 (508)
T ss_pred EEEEcCCC----------------CcChhhhhhhhhhHHHHHHHHHHHHhhcc----cceEEEeec
Confidence 77777776 56799999999999999999888888776 677777643
No 82
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.42 E-value=6.6e-13 Score=98.22 Aligned_cols=81 Identities=20% Similarity=0.336 Sum_probs=76.4
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhc
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKL 201 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 201 (289)
..++.|||.++.+.+++++|.+.|..||+|+++.+..+.. ||+.+|||+|+|++.++|++|+..+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRR---------------tGy~KGYaLvEYet~keAq~A~~~~ 134 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRR---------------TGYVKGYALVEYETLKEAQAAIDAL 134 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccc---------------cccccceeeeehHhHHHHHHHHHhc
Confidence 5678999999999999999999999999999999999888 8999999999999999999999999
Q ss_pred CCcccCCccccceeeeeccC
Q 022981 202 DDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 202 ~~~~~~~~~~g~~i~v~~~~ 221 (289)
||..+. +..|.|+..-
T Consensus 135 Ng~~ll----~q~v~VDw~F 150 (170)
T KOG0130|consen 135 NGAELL----GQNVSVDWCF 150 (170)
T ss_pred cchhhh----CCceeEEEEE
Confidence 999999 8899888764
No 83
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.42 E-value=2.5e-13 Score=112.84 Aligned_cols=92 Identities=34% Similarity=0.598 Sum_probs=83.7
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCC
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (289)
+.+++|+|+||.+.++.+||++.|++||+|.+++|. ++|+||.|...++|..|+..||+.+|.|++|+|+++...
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-----kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-----KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeee-----cceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 588999999999999999999999999999999998 679999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCC
Q 022981 84 SGRGPSSSDRRGGYGGG 100 (289)
Q Consensus 84 ~~~~~~~~~~~~~~~~~ 100 (289)
-...+...+..+++..+
T Consensus 151 lrtapgmgDq~~cyrcG 167 (346)
T KOG0109|consen 151 LRTAPGMGDQSGCYRCG 167 (346)
T ss_pred cccCCCCCCHHHheecc
Confidence 66667777766666654
No 84
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.39 E-value=8.4e-13 Score=111.44 Aligned_cols=80 Identities=26% Similarity=0.334 Sum_probs=75.1
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 121 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
.....+|+|.|+|+...+.||+.+|.+||.|.+|+|+-+..| ++|||||+|++.++|++|.++
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-----------------SKGFGFVTmen~~dadRARa~ 155 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-----------------SKGFGFVTMENPADADRARAE 155 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-----------------CCccceEEecChhhHHHHHHH
Confidence 455669999999999999999999999999999999999886 699999999999999999999
Q ss_pred cCCcccCCccccceeeeeccC
Q 022981 201 LDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 201 ~~~~~~~~~~~g~~i~v~~~~ 221 (289)
|||..+. |++|.|..+.
T Consensus 156 LHgt~VE----GRkIEVn~AT 172 (376)
T KOG0125|consen 156 LHGTVVE----GRKIEVNNAT 172 (376)
T ss_pred hhcceee----ceEEEEeccc
Confidence 9999999 9999999875
No 85
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.39 E-value=1.1e-12 Score=118.28 Aligned_cols=78 Identities=32% Similarity=0.582 Sum_probs=74.2
Q ss_pred CeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCC
Q 022981 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (289)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (289)
..|||||||+++++++|.++|+..|.|.+++++.| |+++||||++|.++++|..|++.|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999764 799999999999999999999999999999999999999865
Q ss_pred C
Q 022981 84 S 84 (289)
Q Consensus 84 ~ 84 (289)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 4
No 86
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=4.2e-12 Score=115.17 Aligned_cols=183 Identities=22% Similarity=0.334 Sum_probs=141.8
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhc-----------C-CeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeC
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKY-----------G-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~-----------G-~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 71 (289)
...+.++|+++|+.++++.+..+|..- | .+..+.+... +.||||+|.+.++|..|+. +++..+.
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~---~nfa~ie~~s~~~at~~~~-~~~~~f~ 248 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLE---KNFAFIEFRSISEATEAMA-LDGIIFE 248 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeeccc---ccceeEEecCCCchhhhhc-ccchhhC
Confidence 566789999999999999999999753 2 3666666544 7899999999999999999 9999999
Q ss_pred CceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCe
Q 022981 72 GCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDV 151 (289)
Q Consensus 72 g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v 151 (289)
|..+++........-...... .+ ..+.-+..............++|++||..+++..+.++...||++
T Consensus 249 g~~~~~~r~~d~~~~p~~~~~-~~-----------~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~l 316 (500)
T KOG0120|consen 249 GRPLKIRRPHDYQPVPGITLS-PS-----------QLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPL 316 (500)
T ss_pred CCCceecccccccCCccchhh-hc-----------cccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccc
Confidence 999998866654211110000 00 000000000111223445689999999999999999999999999
Q ss_pred eEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccC
Q 022981 152 CFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 152 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~ 221 (289)
....+..+.. ||.++||||.+|.++.....|+..|+|..++ +..|.|..+-
T Consensus 317 k~f~lv~d~~---------------~g~skg~af~ey~dpsvtd~A~agLnGm~lg----d~~lvvq~A~ 367 (500)
T KOG0120|consen 317 KAFRLVKDSA---------------TGNSKGFAFCEYCDPSVTDQAIAGLNGMQLG----DKKLVVQRAI 367 (500)
T ss_pred hhheeecccc---------------cccccceeeeeeeCCcchhhhhcccchhhhc----CceeEeehhh
Confidence 9999998877 7899999999999999999999999999999 8999998775
No 87
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=7.4e-12 Score=97.65 Aligned_cols=80 Identities=20% Similarity=0.321 Sum_probs=72.3
Q ss_pred CcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcC
Q 022981 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLD 202 (289)
Q Consensus 123 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~ 202 (289)
..+.|||+|||.++.+.+|.++|-+||.|..|++...+. ...||||+|+++.+|+.||..-+
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g------------------~ppfafVeFEd~RDAeDAiygRd 66 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG------------------PPPFAFVEFEDPRDAEDAIYGRD 66 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC------------------CCCeeEEEecCccchhhhhhccc
Confidence 456999999999999999999999999999999876554 25799999999999999999999
Q ss_pred CcccCCccccceeeeeccCCCC
Q 022981 203 DTEFRNPWARGRITVKRYDRSP 224 (289)
Q Consensus 203 ~~~~~~~~~g~~i~v~~~~~~~ 224 (289)
|+.+. ++.|+|+.+....
T Consensus 67 GYdyd----g~rLRVEfprggr 84 (241)
T KOG0105|consen 67 GYDYD----GCRLRVEFPRGGR 84 (241)
T ss_pred ccccC----cceEEEEeccCCC
Confidence 99999 9999999998544
No 88
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=6e-12 Score=92.39 Aligned_cols=81 Identities=17% Similarity=0.190 Sum_probs=74.8
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhc
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKL 201 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 201 (289)
...++|||+||..-++++.|.++|.++|+|..+.+-.+.. +..+.||+||+|-+.++|+.|++-+
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~---------------kktpCGFCFVeyy~~~dA~~Alryi 98 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRF---------------KKTPCGFCFVEYYSRDDAEDALRYI 98 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccC---------------CcCccceEEEEEecchhHHHHHHHh
Confidence 4577999999999999999999999999999998887777 5578899999999999999999999
Q ss_pred CCcccCCccccceeeeeccC
Q 022981 202 DDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 202 ~~~~~~~~~~g~~i~v~~~~ 221 (289)
+++.+. .++|+++.+.
T Consensus 99 sgtrLd----dr~ir~D~D~ 114 (153)
T KOG0121|consen 99 SGTRLD----DRPIRIDWDA 114 (153)
T ss_pred ccCccc----ccceeeeccc
Confidence 999999 8999999876
No 89
>smart00361 RRM_1 RNA recognition motif.
Probab=99.30 E-value=1.1e-11 Score=84.48 Aligned_cols=58 Identities=26% Similarity=0.438 Sum_probs=51.7
Q ss_pred HHHHHHHHh----hcCCeeEEE-Ecc---C--CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEE
Q 022981 20 EYEVEDLFY----KYGRILDIE-LKI---P--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (289)
Q Consensus 20 ~~~L~~~F~----~~G~i~~v~-~~~---~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 77 (289)
+++|+++|+ +||.|..|. +.. + ++++|||||+|.+.++|.+|+..|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578999998 999999985 432 2 678999999999999999999999999999999986
No 90
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.30 E-value=1.5e-11 Score=102.88 Aligned_cols=76 Identities=18% Similarity=0.331 Sum_probs=69.5
Q ss_pred cceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCC
Q 022981 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDD 203 (289)
Q Consensus 124 ~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~ 203 (289)
..+|||+|||+.+++++|+++|+.||.|..+.|..+.. ++|||||+|++.++|..|+. |+|
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~------------------~~GfAFVtF~d~eaAe~All-LnG 64 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE------------------RSQIAYVTFKDPQGAETALL-LSG 64 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC------------------CCCEEEEEeCcHHHHHHHHH-hcC
Confidence 45999999999999999999999999999999988754 25899999999999999995 999
Q ss_pred cccCCccccceeeeeccCC
Q 022981 204 TEFRNPWARGRITVKRYDR 222 (289)
Q Consensus 204 ~~~~~~~~g~~i~v~~~~~ 222 (289)
..+. |+.|.|..+..
T Consensus 65 ~~l~----gr~V~Vt~a~~ 79 (260)
T PLN03120 65 ATIV----DQSVTITPAED 79 (260)
T ss_pred CeeC----CceEEEEeccC
Confidence 9998 99999998763
No 91
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.29 E-value=1.1e-11 Score=84.52 Aligned_cols=70 Identities=24% Similarity=0.461 Sum_probs=61.5
Q ss_pred eeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCccc
Q 022981 127 VIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEF 206 (289)
Q Consensus 127 l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~ 206 (289)
|+|+|||+.+++++|.++|..+|.|..+.+.....+ ..+++|||+|.+.++|..|++.+++..+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~----------------~~~~~a~v~f~~~~~a~~al~~~~~~~~ 64 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDG----------------QSRGFAFVEFSSEEDAKRALELLNGKEI 64 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTS----------------SEEEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeecc----------------ccCCEEEEEeCCHHHHHHHHHHCCCcEE
Confidence 789999999999999999999999999999987653 6789999999999999999999998888
Q ss_pred CCccccceee
Q 022981 207 RNPWARGRIT 216 (289)
Q Consensus 207 ~~~~~g~~i~ 216 (289)
. |+.|.
T Consensus 65 ~----g~~l~ 70 (70)
T PF14259_consen 65 D----GRKLR 70 (70)
T ss_dssp T----TEEEE
T ss_pred C----CEEcC
Confidence 8 77653
No 92
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=8.7e-11 Score=105.08 Aligned_cols=162 Identities=20% Similarity=0.282 Sum_probs=114.4
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---C--CCCCc---eEEEEEccHHHHHHHHHHhCCceeCCceEE
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---P--PRPPC---YCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~--~~~~g---~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 76 (289)
-++.||||+||++++|++|...|..||.+.--+-.. . -.++| |+|+.|+++.++..-|.+..- ....+.
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~~y 334 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGNYY 334 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccceE
Confidence 467899999999999999999999999774322211 1 14466 999999999998888776532 333333
Q ss_pred EEEccCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHH-hcCCe
Q 022981 77 VELAHGGSGRG----PSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMR-KAGDV 151 (289)
Q Consensus 77 v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~-~~g~v 151 (289)
++.+.+.-.-. .+..-....|. .....+-.+..||||++||..++.++|..+|+ -||.|
T Consensus 335 f~vss~~~k~k~VQIrPW~laDs~fv----------------~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV 398 (520)
T KOG0129|consen 335 FKVSSPTIKDKEVQIRPWVLADSDFV----------------LDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGV 398 (520)
T ss_pred EEEecCcccccceeEEeeEeccchhh----------------hccCcccCccceEEecCCCCcchHHHHHHHHHHhcCce
Confidence 33332211000 00000000000 11234456677999999999999999999999 59999
Q ss_pred eEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 152 CFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 152 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
.++-|..|++ =++++|-|-|+|.+...-.+||..
T Consensus 399 ~yaGIDtD~k---------------~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 399 LYVGIDTDPK---------------LKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred EEEEeccCcc---------------cCCCCCcceeeecccHHHHHHHhh
Confidence 9999999976 348899999999999999999873
No 93
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.26 E-value=1.2e-09 Score=94.10 Aligned_cols=192 Identities=18% Similarity=0.196 Sum_probs=134.4
Q ss_pred CCCCeEEEcCC--CCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeC-C-ceEEEEE
Q 022981 4 RFSRTIYVGNL--PSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD-G-CRLRVEL 79 (289)
Q Consensus 4 ~~~~~l~V~nL--p~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g-~~l~v~~ 79 (289)
.++..|.+.=| -+.+|.|-|.++....|+|..|-|... .--.|.|||++.+.|++|.+.|||..|. | +.|+|++
T Consensus 118 ~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIey 195 (494)
T KOG1456|consen 118 TPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEY 195 (494)
T ss_pred CCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cceeeEEeechhHHHHHHHhhcccccccccceeEEEEe
Confidence 45666665544 456999999999999999999988542 2348999999999999999999999884 4 7899999
Q ss_pred ccCCCCCCC----------------------CCCCCCCC--CCCC----CCCCCCCCCCC--CC----------------
Q 022981 80 AHGGSGRGP----------------------SSSDRRGG--YGGG----GAGGAGGAGAG--AG---------------- 113 (289)
Q Consensus 80 ~~~~~~~~~----------------------~~~~~~~~--~~~~----~~~~~~~~~~~--~~---------------- 113 (289)
+++....-. ...++... +.+. .+|+..+...+ .+
T Consensus 196 AkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~ 275 (494)
T KOG1456|consen 196 AKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDG 275 (494)
T ss_pred cCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccC
Confidence 986541000 00000000 0000 01100000000 00
Q ss_pred -CCCCCCCCCCcceeeecCCCC-CCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCCh
Q 022981 114 -AGRFGISRHSEYRVIVRGLPS-SASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNP 191 (289)
Q Consensus 114 -~~~~~~~~~~~~~l~v~nlp~-~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~ 191 (289)
+-.......+++.++|-+|.. .+.-+.|..+|-.||.|..+++++.+. |-|.|++.+.
T Consensus 276 ~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~--------------------gtamVemgd~ 335 (494)
T KOG1456|consen 276 RGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP--------------------GTAMVEMGDA 335 (494)
T ss_pred CCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc--------------------ceeEEEcCcH
Confidence 000112235577899999974 567788999999999999999999887 5799999999
Q ss_pred HHHHHHHHhcCCcccCCccccceeeeeccC
Q 022981 192 EDMKYAIRKLDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 192 ~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~ 221 (289)
.+.+.|+..|++..+- |..|.|...+
T Consensus 336 ~aver~v~hLnn~~lf----G~kl~v~~Sk 361 (494)
T KOG1456|consen 336 YAVERAVTHLNNIPLF----GGKLNVCVSK 361 (494)
T ss_pred HHHHHHHHHhccCccc----cceEEEeecc
Confidence 9999999999999887 7888777654
No 94
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.25 E-value=5.8e-12 Score=100.77 Aligned_cols=142 Identities=20% Similarity=0.308 Sum_probs=115.6
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc--CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
+..+||||+||...++++.|.++|-+.|+|..|.|.. ++..| ||||.|.++-.+.-|++.|||..+.+..|+|++-.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 5689999999999999999999999999999999965 44556 99999999999999999999999999999998754
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC
Q 022981 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (289)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~ 161 (289)
... -.-|...++++.+.+.|...|++.-+.+..+.+
T Consensus 86 G~s--------------------------------------------hapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d 121 (267)
T KOG4454|consen 86 GNS--------------------------------------------HAPLDERVTEEILYEVFSQAGPIEGVRIPTDND 121 (267)
T ss_pred CCC--------------------------------------------cchhhhhcchhhheeeecccCCCCCcccccccc
Confidence 320 011445667788888899999998888887766
Q ss_pred CCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCccc
Q 022981 162 GWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEF 206 (289)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~ 206 (289)
| .+.+++|+.+.-.-..-.++..+.+...
T Consensus 122 ~----------------rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 122 G----------------RNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred C----------------CccCccchhhhhhhcCcHHhhhhcccCc
Confidence 4 6788999988777666677766665443
No 95
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.24 E-value=1.1e-11 Score=96.53 Aligned_cols=83 Identities=23% Similarity=0.320 Sum_probs=76.1
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHH
Q 022981 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIR 199 (289)
Q Consensus 120 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 199 (289)
+.....+|||+||+..++++.|.++|-++|+|.++.|+++.- |....||||++|.+.++|+.|++
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv---------------~~~~qGygF~Ef~~eedadYAik 69 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRV---------------TQKHQGYGFAEFRTEEDADYAIK 69 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhh---------------cccccceeEEEEechhhhHHHHH
Confidence 345567999999999999999999999999999999999887 55778999999999999999999
Q ss_pred hcCCcccCCccccceeeeeccC
Q 022981 200 KLDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 200 ~~~~~~~~~~~~g~~i~v~~~~ 221 (289)
.|+.-.+. |++|+|..+.
T Consensus 70 iln~VkLY----grpIrv~kas 87 (203)
T KOG0131|consen 70 ILNMVKLY----GRPIRVNKAS 87 (203)
T ss_pred HHHHHHhc----CceeEEEecc
Confidence 99988888 9999999886
No 96
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=2.2e-11 Score=98.67 Aligned_cols=79 Identities=18% Similarity=0.226 Sum_probs=68.1
Q ss_pred CcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcC
Q 022981 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLD 202 (289)
Q Consensus 123 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~ 202 (289)
.-++|||++|++.+..+.|+++|++||+|..+.|+.|+. ||+++|||||+|.+.+.|.+|++.-+
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~---------------t~rskGyGfVTf~d~~aa~rAc~dp~ 75 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKN---------------TGRSKGYGFVTFRDAEAATRACKDPN 75 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccC---------------CccccceeeEEeecHHHHHHHhcCCC
Confidence 456899999999999999999999999999999999998 89999999999999999999997433
Q ss_pred CcccCCccccceeeeeccC
Q 022981 203 DTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 203 ~~~~~~~~~g~~i~v~~~~ 221 (289)
-.+. |+...+..+-
T Consensus 76 -piId----GR~aNcnlA~ 89 (247)
T KOG0149|consen 76 -PIID----GRKANCNLAS 89 (247)
T ss_pred -Cccc----ccccccchhh
Confidence 2333 6666666654
No 97
>PLN03213 repressor of silencing 3; Provisional
Probab=99.23 E-value=3.6e-11 Score=106.71 Aligned_cols=77 Identities=18% Similarity=0.311 Sum_probs=69.7
Q ss_pred CcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCCh--HHHHHHHHh
Q 022981 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNP--EDMKYAIRK 200 (289)
Q Consensus 123 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~--~~a~~a~~~ 200 (289)
...+|||+||++.+++++|...|..||.|..+.|++ . || +|||||+|... .++.+|+..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--E---------------TG--RGFAFVEMssdddaEeeKAISa 69 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--T---------------KG--RSFAYIDFSPSSTNSLTKLFST 69 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--c---------------cC--CceEEEEecCCcHHHHHHHHHH
Confidence 456999999999999999999999999999999993 2 34 89999999987 689999999
Q ss_pred cCCcccCCccccceeeeeccCC
Q 022981 201 LDDTEFRNPWARGRITVKRYDR 222 (289)
Q Consensus 201 ~~~~~~~~~~~g~~i~v~~~~~ 222 (289)
|+|..++ |+.|+|..++.
T Consensus 70 LNGAEWK----GR~LKVNKAKP 87 (759)
T PLN03213 70 YNGCVWK----GGRLRLEKAKE 87 (759)
T ss_pred hcCCeec----CceeEEeeccH
Confidence 9999977 99999999874
No 98
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.20 E-value=1.4e-11 Score=116.24 Aligned_cols=158 Identities=21% Similarity=0.364 Sum_probs=133.7
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC--CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
..++|||+|||+..+++.+|+..|..+|.|.+|.|... +..-.||||.|.+...+-.|...+.+..|..-.+++.+..
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 46789999999999999999999999999999999654 3445699999999999999999998888765555555443
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC
Q 022981 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (289)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~ 161 (289)
.. ....+.+++++|+.-+....|..+|..||.|..|.+.....
T Consensus 450 ~k-------------------------------------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~ 492 (975)
T KOG0112|consen 450 PK-------------------------------------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQP 492 (975)
T ss_pred cc-------------------------------------cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCc
Confidence 21 23456899999999999999999999999999988877555
Q ss_pred CCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccC
Q 022981 162 GWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~ 221 (289)
||+|.|++...|+.|++.|.+..++++ .+.++|..+.
T Consensus 493 ---------------------yayi~yes~~~aq~a~~~~rgap~G~P--~~r~rvdla~ 529 (975)
T KOG0112|consen 493 ---------------------YAYIQYESPPAAQAATHDMRGAPLGGP--PRRLRVDLAS 529 (975)
T ss_pred ---------------------ceeeecccCccchhhHHHHhcCcCCCC--Cccccccccc
Confidence 999999999999999999999999965 5568888765
No 99
>smart00362 RRM_2 RNA recognition motif.
Probab=99.20 E-value=1.2e-10 Score=78.74 Aligned_cols=71 Identities=27% Similarity=0.460 Sum_probs=63.9
Q ss_pred eeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcc
Q 022981 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTE 205 (289)
Q Consensus 126 ~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~ 205 (289)
+|+|.|||..+++++|.++|..+|.|..+.+..+. + .+.++|||+|.+.++|..|+..+++..
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~----------------~~~~~~~v~f~~~~~a~~a~~~~~~~~ 63 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-G----------------KSKGFAFVEFESEEDAEKAIEALNGTK 63 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-C----------------CCCceEEEEeCCHHHHHHHHHHhCCcE
Confidence 58999999999999999999999999999988765 2 457899999999999999999999988
Q ss_pred cCCccccceeee
Q 022981 206 FRNPWARGRITV 217 (289)
Q Consensus 206 ~~~~~~g~~i~v 217 (289)
+. +..|.|
T Consensus 64 ~~----~~~i~v 71 (72)
T smart00362 64 LG----GRPLRV 71 (72)
T ss_pred EC----CEEEee
Confidence 87 777765
No 100
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.20 E-value=1e-10 Score=96.28 Aligned_cols=76 Identities=20% Similarity=0.341 Sum_probs=69.1
Q ss_pred CcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcC
Q 022981 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLD 202 (289)
Q Consensus 123 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~ 202 (289)
.+.+|+|+||++.+++++|+++|+.||.|.++.|..+.. ..++|||+|+++++|+.|+. |+
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e------------------t~gfAfVtF~d~~aaetAll-Ln 64 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE------------------YACTAYVTFKDAYALETAVL-LS 64 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC------------------cceEEEEEECCHHHHHHHHh-cC
Confidence 456999999999999999999999999999999998754 35899999999999999995 99
Q ss_pred CcccCCccccceeeeeccC
Q 022981 203 DTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 203 ~~~~~~~~~g~~i~v~~~~ 221 (289)
|..+. +..|.|..+.
T Consensus 65 Ga~l~----d~~I~It~~~ 79 (243)
T PLN03121 65 GATIV----DQRVCITRWG 79 (243)
T ss_pred CCeeC----CceEEEEeCc
Confidence 99998 8899998865
No 101
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.20 E-value=1e-10 Score=82.81 Aligned_cols=80 Identities=19% Similarity=0.213 Sum_probs=70.7
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHH
Q 022981 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIR 199 (289)
Q Consensus 120 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 199 (289)
+..-...|||.|||++++.+++-++|.+||+|..+.|-..+.. +|-|||.|++..+|.+|++
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T------------------rGTAFVVYedi~dAk~A~d 75 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET------------------RGTAFVVYEDIFDAKKACD 75 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc------------------CceEEEEehHhhhHHHHHH
Confidence 3345568999999999999999999999999999999876664 7999999999999999999
Q ss_pred hcCCcccCCccccceeeeeccC
Q 022981 200 KLDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 200 ~~~~~~~~~~~~g~~i~v~~~~ 221 (289)
.|.|+.+. ++.+.|-...
T Consensus 76 hlsg~n~~----~ryl~vlyyq 93 (124)
T KOG0114|consen 76 HLSGYNVD----NRYLVVLYYQ 93 (124)
T ss_pred HhcccccC----CceEEEEecC
Confidence 99999998 7888876543
No 102
>smart00360 RRM RNA recognition motif.
Probab=99.19 E-value=1.5e-10 Score=78.03 Aligned_cols=70 Identities=23% Similarity=0.397 Sum_probs=63.2
Q ss_pred ecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCC
Q 022981 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRN 208 (289)
Q Consensus 129 v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~ 208 (289)
|.|||..+++++|.++|..||.|..+.+...+. ++.+.++|||+|.+.++|..|+..+++..+.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~---------------~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~- 64 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKD---------------TGKSKGFAFVEFESEEDAEKALEALNGKELD- 64 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCC---------------CCCCCceEEEEeCCHHHHHHHHHHcCCCeeC-
Confidence 578999999999999999999999999998765 4578899999999999999999999998887
Q ss_pred ccccceeee
Q 022981 209 PWARGRITV 217 (289)
Q Consensus 209 ~~~g~~i~v 217 (289)
+..+.|
T Consensus 65 ---~~~~~v 70 (71)
T smart00360 65 ---GRPLKV 70 (71)
T ss_pred ---CcEEEe
Confidence 777765
No 103
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=2.3e-12 Score=100.24 Aligned_cols=81 Identities=16% Similarity=0.234 Sum_probs=75.9
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhc
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKL 201 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 201 (289)
....-|||+|||+.+|+-||.-.|++||.|..+.++++.. ||+++||||+.|++.....-|+..|
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~---------------TGKSKGFaFLcYEDQRSTILAVDN~ 97 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKK---------------TGKSKGFAFLCYEDQRSTILAVDNL 97 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCC---------------CCcccceEEEEecCccceEEEEecc
Confidence 3455899999999999999999999999999999999999 9999999999999999999999999
Q ss_pred CCcccCCccccceeeeeccC
Q 022981 202 DDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 202 ~~~~~~~~~~g~~i~v~~~~ 221 (289)
+|..+. |+.|+|+...
T Consensus 98 NGiki~----gRtirVDHv~ 113 (219)
T KOG0126|consen 98 NGIKIL----GRTIRVDHVS 113 (219)
T ss_pred CCceec----ceeEEeeecc
Confidence 999999 9999998643
No 104
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.15 E-value=9.5e-11 Score=109.05 Aligned_cols=76 Identities=28% Similarity=0.518 Sum_probs=72.0
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCC
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (289)
-++|||||+|+..+++.||.++|+.||+|..|.++.. +++|||.+..-.+|.+||.+|.+..+.++.|+|.|+...
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~---R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP---RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC---CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 3689999999999999999999999999999999754 899999999999999999999999999999999999866
No 105
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.15 E-value=5.2e-10 Score=99.56 Aligned_cols=183 Identities=26% Similarity=0.354 Sum_probs=120.4
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeE-EEEccC--CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILD-IELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~-v~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
+...|-+.+||+.||++||.+||+-.-.|.+ |.+..+ +++.|-|||+|++++.|+.||. -|...|..+.|.|..+.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRSS 180 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehhH
Confidence 5568999999999999999999998754444 334333 5788999999999999999999 78888999999998765
Q ss_pred CCC------------CCCCCCCCCCCCCCC------CCC----------CCC---------------CCCCCCCC-----
Q 022981 82 GGS------------GRGPSSSDRRGGYGG------GGA----------GGA---------------GGAGAGAG----- 113 (289)
Q Consensus 82 ~~~------------~~~~~~~~~~~~~~~------~~~----------~~~---------------~~~~~~~~----- 113 (289)
..+ .+ +..........+ ..+ +.. ..++....
T Consensus 181 ~~e~~~~~~~~~~~~~r-pGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~ 259 (510)
T KOG4211|consen 181 RAEVKRAAGPGDGRVGR-PGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNY 259 (510)
T ss_pred HHHHHhhccccccccCC-CCccccccCCccccccccccCCCccccccccccCCccccccCcccccccccccccccccccc
Confidence 211 01 111111000000 000 000 00000000
Q ss_pred -----------CCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccce
Q 022981 114 -----------AGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGT 182 (289)
Q Consensus 114 -----------~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g 182 (289)
.+....-......+...+||+..++.+|..+|...-++ .++|...++| +..|
T Consensus 260 ~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dG----------------r~TG 322 (510)
T KOG4211|consen 260 PVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDG----------------RATG 322 (510)
T ss_pred CCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCC----------------ccCC
Confidence 00000011122578889999999999999999976555 6777776665 6789
Q ss_pred EEEEecCChHHHHHHHHhcCCcccC
Q 022981 183 YGVVDYTNPEDMKYAIRKLDDTEFR 207 (289)
Q Consensus 183 ~~fv~f~~~~~a~~a~~~~~~~~~~ 207 (289)
-|+|+|.+.++|..|+. -++..+.
T Consensus 323 EAdveF~t~edav~Ams-kd~anm~ 346 (510)
T KOG4211|consen 323 EADVEFATGEDAVGAMG-KDGANMG 346 (510)
T ss_pred cceeecccchhhHhhhc-cCCcccC
Confidence 99999999999999985 3444443
No 106
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.13 E-value=4.6e-10 Score=100.82 Aligned_cols=78 Identities=35% Similarity=0.602 Sum_probs=67.2
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
...+|||+|||+++++++|+++|..||+|+...|.. .+...+||||+|++.++++.||. -+-..++++.|.|+--.
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEEEecc
Confidence 345699999999999999999999999999987732 24444999999999999999999 56889999999999776
Q ss_pred CC
Q 022981 82 GG 83 (289)
Q Consensus 82 ~~ 83 (289)
..
T Consensus 366 ~~ 367 (419)
T KOG0116|consen 366 PG 367 (419)
T ss_pred cc
Confidence 53
No 107
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.11 E-value=1.7e-10 Score=104.12 Aligned_cols=86 Identities=24% Similarity=0.329 Sum_probs=80.5
Q ss_pred ceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCc
Q 022981 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDT 204 (289)
Q Consensus 125 ~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 204 (289)
..|||+|+|+++++++|.++|+..|.|.+++++.|+. ||.++||||++|.+.++|..|++.|+|.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~---------------tG~~~G~~f~~~~~~~~~~~a~~~lNg~ 83 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRE---------------TGKPKGFGFCEFTDEETAERAIRNLNGA 83 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeeccccc---------------CCCcCceeeEecCchhhHHHHHHhcCCc
Confidence 6999999999999999999999999999999999988 8899999999999999999999999999
Q ss_pred ccCCccccceeeeeccCCCCCCCcc
Q 022981 205 EFRNPWARGRITVKRYDRSPSRSRS 229 (289)
Q Consensus 205 ~~~~~~~g~~i~v~~~~~~~~rsr~ 229 (289)
++. |+.|+|.++.....+.+.
T Consensus 84 ~~~----gr~l~v~~~~~~~~~~~~ 104 (435)
T KOG0108|consen 84 EFN----GRKLRVNYASNRKNAERS 104 (435)
T ss_pred ccC----CceEEeecccccchhHHH
Confidence 999 999999999866655444
No 108
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=8.4e-11 Score=96.85 Aligned_cols=81 Identities=25% Similarity=0.554 Sum_probs=75.2
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEE
Q 022981 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (289)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 79 (289)
+.+.++|||-.||.+..+.||.++|-.||.|...++.. ++.+|+|+||.|.++.+|+.||..|||..|+=++|+|++
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 36789999999999999999999999999999999855 468999999999999999999999999999999999998
Q ss_pred ccCC
Q 022981 80 AHGG 83 (289)
Q Consensus 80 ~~~~ 83 (289)
..++
T Consensus 362 KRPk 365 (371)
T KOG0146|consen 362 KRPK 365 (371)
T ss_pred cCcc
Confidence 7765
No 109
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.10 E-value=3.2e-09 Score=88.57 Aligned_cols=80 Identities=25% Similarity=0.446 Sum_probs=72.3
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC--CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccC
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 82 (289)
-..+|+|.|||+.|+++||+++|..||.++.+-|..+ +.+.|.|-|.|...++|..||+.++|..++|+.|++.....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 3478999999999999999999999998888888664 78899999999999999999999999999999999988765
Q ss_pred CC
Q 022981 83 GS 84 (289)
Q Consensus 83 ~~ 84 (289)
..
T Consensus 162 ~~ 163 (243)
T KOG0533|consen 162 PS 163 (243)
T ss_pred cc
Confidence 43
No 110
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.07 E-value=1.4e-09 Score=73.91 Aligned_cols=73 Identities=25% Similarity=0.428 Sum_probs=65.6
Q ss_pred eeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcc
Q 022981 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTE 205 (289)
Q Consensus 126 ~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~ 205 (289)
+|+|.|||..+++++|.++|..+|.|..+.+...+.+ .+.++|||+|.+.++|..|++.+++..
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~----------------~~~~~~~v~f~s~~~a~~a~~~~~~~~ 64 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT----------------KSKGFAFVEFEDEEDAEKALEALNGKE 64 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC----------------CcceEEEEEECCHHHHHHHHHHhCCCe
Confidence 4789999999999999999999999999999987652 457899999999999999999999998
Q ss_pred cCCccccceeeee
Q 022981 206 FRNPWARGRITVK 218 (289)
Q Consensus 206 ~~~~~~g~~i~v~ 218 (289)
+. +..+.|.
T Consensus 65 ~~----~~~~~v~ 73 (74)
T cd00590 65 LG----GRPLRVE 73 (74)
T ss_pred EC----CeEEEEe
Confidence 77 7877764
No 111
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.06 E-value=7.1e-10 Score=95.24 Aligned_cols=79 Identities=24% Similarity=0.378 Sum_probs=74.5
Q ss_pred cceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCC
Q 022981 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDD 203 (289)
Q Consensus 124 ~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~ 203 (289)
..+|||+|||..+++++|.++|.+||.|..+.+..+.. ++.++|||||+|.+.++|..|++.+++
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~---------------~~~~~g~~~v~f~~~~~~~~a~~~~~~ 179 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRE---------------TGKSRGFAFVEFESEESAEKAIEELNG 179 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccc---------------cCccCceEEEEecCHHHHHHHHHHcCC
Confidence 58999999999999999999999999999999999875 678999999999999999999999999
Q ss_pred cccCCccccceeeeeccC
Q 022981 204 TEFRNPWARGRITVKRYD 221 (289)
Q Consensus 204 ~~~~~~~~g~~i~v~~~~ 221 (289)
..+. ++.|.|..+.
T Consensus 180 ~~~~----~~~~~v~~~~ 193 (306)
T COG0724 180 KELE----GRPLRVQKAQ 193 (306)
T ss_pred CeEC----CceeEeeccc
Confidence 9999 9999999865
No 112
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.04 E-value=3.9e-10 Score=97.31 Aligned_cols=178 Identities=20% Similarity=0.244 Sum_probs=136.7
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCC-ceeCCceEEEEEc
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDG-YNFDGCRLRVELA 80 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~v~~~ 80 (289)
...++|++++...+.+.++..+|..+|.+....+.. ...++++++|.|+..+.+..|++ +.+ ..+.++.+...+.
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~-~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALE-ESGSKVLDGNKGEKDLN 165 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHH-hhhccccccccccCccc
Confidence 367899999999999999999999999877766632 35779999999999999999999 555 4666666665555
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceee-ecCCCCCCCHHHHHHHHHhcCCeeEEEEeeC
Q 022981 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVI-VRGLPSSASWQDLKDHMRKAGDVCFAEVSRD 159 (289)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~ 159 (289)
.....+...... ........+++ |.+|+..++.++|..+|..+|.|..+.++..
T Consensus 166 ~~~~~~~~n~~~-------------------------~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~ 220 (285)
T KOG4210|consen 166 TRRGLRPKNKLS-------------------------RLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTD 220 (285)
T ss_pred ccccccccchhc-------------------------ccccCccccceeecccccccchHHHhhhccCcCcceeeccCCC
Confidence 433211111100 01112223555 9999999999999999999999999999988
Q ss_pred CCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccCCCCCCCc
Q 022981 160 SEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSPSRSR 228 (289)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~~~~~rsr 228 (289)
.. ++.+.|||||.|.....+..++.. ....+. +.++.+......+..+.
T Consensus 221 ~~---------------s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~ 269 (285)
T KOG4210|consen 221 EE---------------SGDSKGFAYVDFSAGNSKKLALND-QTRSIG----GRPLRLEEDEPRPKSDG 269 (285)
T ss_pred CC---------------ccchhhhhhhhhhhchhHHHHhhc-ccCccc----CcccccccCCCCccccc
Confidence 87 789999999999999999999886 677766 88898888876655443
No 113
>smart00361 RRM_1 RNA recognition motif.
Probab=99.03 E-value=1.1e-09 Score=74.52 Aligned_cols=63 Identities=17% Similarity=0.178 Sum_probs=52.3
Q ss_pred HHHHHHHHH----hcCCeeEEE-EeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCcccc
Q 022981 138 WQDLKDHMR----KAGDVCFAE-VSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR 212 (289)
Q Consensus 138 ~~~l~~~f~----~~g~v~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g 212 (289)
+++|.++|. +||.|..+. |..+... .++.++|||||+|.+.++|.+|+..|+|..+. |
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~-------------~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~----g 64 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVG-------------YENHKRGNVYITFERSEDAARAIVDLNGRYFD----G 64 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCC-------------CCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC----C
Confidence 467777777 999999996 6665541 02678999999999999999999999999998 8
Q ss_pred ceeee
Q 022981 213 GRITV 217 (289)
Q Consensus 213 ~~i~v 217 (289)
+.|.+
T Consensus 65 r~l~~ 69 (70)
T smart00361 65 RTVKA 69 (70)
T ss_pred EEEEe
Confidence 88875
No 114
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=2.4e-10 Score=91.64 Aligned_cols=83 Identities=20% Similarity=0.283 Sum_probs=77.2
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhc
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKL 201 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 201 (289)
....+|||++|..++++.-|...|=.||.|..+.++.+.. +++.+|||||+|+-.++|..|+..|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDye---------------sqkHRgFgFVefe~aEDAaaAiDNM 72 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYE---------------SQKHRGFGFVEFEEAEDAAAAIDNM 72 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchh---------------cccccceeEEEeeccchhHHHhhcC
Confidence 3456999999999999999999999999999999999888 6789999999999999999999999
Q ss_pred CCcccCCccccceeeeeccCCC
Q 022981 202 DDTEFRNPWARGRITVKRYDRS 223 (289)
Q Consensus 202 ~~~~~~~~~~g~~i~v~~~~~~ 223 (289)
++.++. |+.|+|..+.+.
T Consensus 73 nesEL~----GrtirVN~AkP~ 90 (298)
T KOG0111|consen 73 NESELF----GRTIRVNLAKPE 90 (298)
T ss_pred chhhhc----ceeEEEeecCCc
Confidence 999998 999999998753
No 115
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.01 E-value=1.2e-09 Score=93.28 Aligned_cols=76 Identities=28% Similarity=0.520 Sum_probs=68.4
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHh-CCceeCCceEEEEEccC
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR-DGYNFDGCRLRVELAHG 82 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l-~g~~~~g~~l~v~~~~~ 82 (289)
+..++|||++|-..+++.+|++.|.+||+|..|.+... ++.|||+|.+.++|+.|..++ +...|+|.+|+|.|..+
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~---~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR---KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc---cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 45679999999999999999999999999999988654 679999999999999998765 77778999999999886
No 116
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.01 E-value=1.1e-09 Score=87.18 Aligned_cols=79 Identities=24% Similarity=0.377 Sum_probs=71.5
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhc-CCeeEEEE---ccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKY-GRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~-G~i~~v~~---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
....++|..||..+-+.+|..+|.+| |.|..+.+ ..||.++|||||+|++++.|+-|-+.||+..|.++.|.|.+-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 44568999999999999999999998 78888888 458999999999999999999999999999999999999987
Q ss_pred cCC
Q 022981 81 HGG 83 (289)
Q Consensus 81 ~~~ 83 (289)
.+.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 644
No 117
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.98 E-value=1.7e-09 Score=97.71 Aligned_cols=79 Identities=27% Similarity=0.524 Sum_probs=72.5
Q ss_pred CCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccC
Q 022981 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (289)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 82 (289)
.++|||.+|...|...+|++||++||+|+..+|+.. +..++|+||++.+.++|.++|..|+.+.|+|+.|.|+.++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 578999999999999999999999999999999654 45577999999999999999999999999999999999986
Q ss_pred CC
Q 022981 83 GS 84 (289)
Q Consensus 83 ~~ 84 (289)
..
T Consensus 485 Ep 486 (940)
T KOG4661|consen 485 EP 486 (940)
T ss_pred Cc
Confidence 54
No 118
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.96 E-value=1.1e-10 Score=109.77 Aligned_cols=143 Identities=23% Similarity=0.267 Sum_probs=119.9
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEc---cCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELK---IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~---~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
...++||.||++.+.+.+|...|..+|.+..+.+. ..++.+|+|||+|..++++.+||...++..++
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g---------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG---------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh----------
Confidence 34678999999999999999999999988887774 34788999999999999999999955544443
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC
Q 022981 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (289)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~ 161 (289)
. ..++|.|+|+..|.++++.+|.+.|.++...++....
T Consensus 736 K------------------------------------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~ 773 (881)
T KOG0128|consen 736 K------------------------------------------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA 773 (881)
T ss_pred h------------------------------------------hhhheeCCCCCCchHHHHhhccccCCccccchhhhhc
Confidence 1 1678999999999999999999999999988777666
Q ss_pred CCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeec
Q 022981 162 GWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 219 (289)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~ 219 (289)
| +++|.|+|.|.+..+|..+....+...+. ...+.+..
T Consensus 774 g----------------kpkg~a~v~y~~ea~~s~~~~s~d~~~~r----E~~~~v~v 811 (881)
T KOG0128|consen 774 G----------------KPKGKARVDYNTEADASRKVASVDVAGKR----ENNGEVQV 811 (881)
T ss_pred c----------------ccccceeccCCCcchhhhhcccchhhhhh----hcCccccc
Confidence 4 88999999999999999999888887776 44444444
No 119
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.87 E-value=6.2e-09 Score=67.51 Aligned_cols=56 Identities=21% Similarity=0.354 Sum_probs=49.0
Q ss_pred HHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeecc
Q 022981 141 LKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 220 (289)
Q Consensus 141 l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~ 220 (289)
|.++|++||+|..+.+..... ++|||+|.+.++|..|+..|++..+. |++|+|+.+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~--------------------~~a~V~f~~~~~A~~a~~~l~~~~~~----g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKR--------------------GFAFVEFASVEDAQKAIEQLNGRQFN----GRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTST--------------------TEEEEEESSHHHHHHHHHHHTTSEET----TEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCC--------------------CEEEEEECCHHHHHHHHHHhCCCEEC----CcEEEEEEC
Confidence 678999999999999877542 69999999999999999999999988 899998753
No 120
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.87 E-value=3.8e-08 Score=90.99 Aligned_cols=77 Identities=19% Similarity=0.124 Sum_probs=63.7
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeE-EEEcc--CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILD-IELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~-v~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
....|||..||..+++.++.++|...-.|++ |.|.. +++..+.|||+|.+++++..|...-+...++.+.|+|....
T Consensus 433 ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~ 512 (944)
T KOG4307|consen 433 AGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIA 512 (944)
T ss_pred ccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeechh
Confidence 3467999999999999999999999888888 66633 46778899999999999999998777777777888886543
No 121
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.86 E-value=3.7e-09 Score=91.65 Aligned_cols=81 Identities=25% Similarity=0.498 Sum_probs=73.2
Q ss_pred CCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccC
Q 022981 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (289)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 82 (289)
...|||++||.++++++|++.|.+||.|.++.++.| .+.+||+||+|.+++++++++. ..-+.|.|+.+.|..|.+
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccc
Confidence 458999999999999999999999999999888765 4789999999999999999998 888999999999999998
Q ss_pred CCCCC
Q 022981 83 GSGRG 87 (289)
Q Consensus 83 ~~~~~ 87 (289)
.....
T Consensus 176 k~~~~ 180 (311)
T KOG4205|consen 176 KEVMQ 180 (311)
T ss_pred hhhcc
Confidence 75443
No 122
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.82 E-value=3.3e-09 Score=95.85 Aligned_cols=71 Identities=31% Similarity=0.467 Sum_probs=65.3
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEE
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 76 (289)
-++.+|+|-|||..+++++|.++|+.||+|..|. .+....|.+||+|.|..+|++|+++|++..|.|+.|+
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir--~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIR--ETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhh--cccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4788999999999999999999999999999964 4455689999999999999999999999999998887
No 123
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.82 E-value=9.9e-09 Score=95.00 Aligned_cols=80 Identities=24% Similarity=0.380 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC------CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEE
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP------PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 77 (289)
...++|||+||++.++++.|...|..||+|..++|++. .....++||.|-+-.+|++|++.|+|..+.+..|++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 45678999999999999999999999999999999763 355779999999999999999999999999999999
Q ss_pred EEccCC
Q 022981 78 ELAHGG 83 (289)
Q Consensus 78 ~~~~~~ 83 (289)
.|++..
T Consensus 252 gWgk~V 257 (877)
T KOG0151|consen 252 GWGKAV 257 (877)
T ss_pred cccccc
Confidence 999654
No 124
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=9.5e-09 Score=88.03 Aligned_cols=81 Identities=25% Similarity=0.277 Sum_probs=75.5
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 121 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
..+.+.|||..|.+.++.++|..+|+.||+|.+|.|.++.. ||.+-.||||+|++.+++++|.-+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~k---------------tgdsLqyaFiEFen~escE~AyFK 300 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRK---------------TGDSLQYAFIEFENKESCEQAYFK 300 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEeccc---------------ccchhheeeeeecchhhHHHHHhh
Confidence 35677999999999999999999999999999999999988 888999999999999999999999
Q ss_pred cCCcccCCccccceeeeecc
Q 022981 201 LDDTEFRNPWARGRITVKRY 220 (289)
Q Consensus 201 ~~~~~~~~~~~g~~i~v~~~ 220 (289)
|++..+. .+.|.|+..
T Consensus 301 MdNvLID----DrRIHVDFS 316 (479)
T KOG0415|consen 301 MDNVLID----DRRIHVDFS 316 (479)
T ss_pred hcceeec----cceEEeehh
Confidence 9999998 899998853
No 125
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.79 E-value=7.4e-09 Score=84.99 Aligned_cols=164 Identities=15% Similarity=0.195 Sum_probs=120.0
Q ss_pred EEEcCCCCCccHHH-H--HHHHhhcCCeeEEEEccC--CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCC
Q 022981 9 IYVGNLPSDIREYE-V--EDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (289)
Q Consensus 9 l~V~nLp~~~t~~~-L--~~~F~~~G~i~~v~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (289)
++++++-.++..+- | ...|+.|-.+...++..+ +...+++|+.|.....-.++-..-+++.+.-..|++.-...-
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtsw 178 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSW 178 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccccc
Confidence 45556655555444 3 566777766666666443 456789999998877777777656666666555443221111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCC
Q 022981 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGW 163 (289)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~ 163 (289)
.. -....-......||-+.|..+++++.|...|.+|-.-....+.++..
T Consensus 179 --ed---------------------------Psl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkR-- 227 (290)
T KOG0226|consen 179 --ED---------------------------PSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKR-- 227 (290)
T ss_pred --CC---------------------------cccccCccccceeecccccccccHHHHHHHHHhccchhhcccccccc--
Confidence 00 01112234556999999999999999999999998888888999888
Q ss_pred CchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeecc
Q 022981 164 QSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 220 (289)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~ 220 (289)
||+++||+||.|.+..++..|+.+|+|..++ .++|++...
T Consensus 228 -------------TgKSkgygfVSf~~pad~~rAmrem~gkyVg----srpiklRkS 267 (290)
T KOG0226|consen 228 -------------TGKSKGYGFVSFRDPADYVRAMREMNGKYVG----SRPIKLRKS 267 (290)
T ss_pred -------------ccccccceeeeecCHHHHHHHHHhhcccccc----cchhHhhhh
Confidence 8999999999999999999999999999998 788877654
No 126
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.78 E-value=3.8e-08 Score=91.02 Aligned_cols=192 Identities=10% Similarity=-0.066 Sum_probs=129.4
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhh-cCCeeEEEEccCC-CCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccC
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYK-YGRILDIELKIPP-RPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~-~G~i~~v~~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 82 (289)
+.+.+-+.++++++...|++++|.. +-.-.++....-+ ...|.++|+|....++++|++ -|.+.+-.+.++|..+-.
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g~ 388 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGRNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPPGN 388 (944)
T ss_pred hhheeeecccccccccchhhhhcCcccccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCCCc
Confidence 3455667899999999999999975 3233333333323 337999999999999999998 678888889999887654
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeE-EE
Q 022981 83 GSGRGPSSSDRRGGYGGGGAGGAG------GAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF-AE 155 (289)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~-~~ 155 (289)
.. +...............+... ..+..+.+.....+...+.+|||..||..+++.++.++|.....|+. |.
T Consensus 389 ~~--~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~ 466 (944)
T KOG4307|consen 389 LG--RNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIE 466 (944)
T ss_pred cc--cccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeE
Confidence 41 11111111111100000000 01111122233445667789999999999999999999999877776 66
Q ss_pred EeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeec
Q 022981 156 VSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 219 (289)
Q Consensus 156 i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~ 219 (289)
|...+.+ +-.+.|||+|..++++..|...-+...++ -+.|+|..
T Consensus 467 lt~~P~~----------------~~~~~afv~F~~~~a~~~a~~~~~k~y~G----~r~irv~s 510 (944)
T KOG4307|consen 467 LTRLPTD----------------LLRPAAFVAFIHPTAPLTASSVKTKFYPG----HRIIRVDS 510 (944)
T ss_pred eccCCcc----------------cccchhhheeccccccchhhhcccccccC----ceEEEeec
Confidence 6665554 56789999999999988888766666655 67888763
No 127
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.76 E-value=2.9e-09 Score=93.10 Aligned_cols=149 Identities=21% Similarity=0.350 Sum_probs=117.0
Q ss_pred CeEEEcCCCCCccHHHHHHHHhhc--CCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCc-eeCCceEEEEEccCC
Q 022981 7 RTIYVGNLPSDIREYEVEDLFYKY--GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY-NFDGCRLRVELAHGG 83 (289)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~--G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v~~~~~~ 83 (289)
..|||+||.+.++.++|..+|... +--..+-+. .|||||.+.+...|.+|++.|+|. .+.|..+.|..+-+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-----~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-----SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-----cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 368999999999999999999753 222222222 589999999999999999999885 468999999988755
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCC
Q 022981 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGW 163 (289)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~ 163 (289)
. .....+.|.|+|+...++-|..+...||.|.++.+......
T Consensus 77 k-------------------------------------qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e- 118 (584)
T KOG2193|consen 77 K-------------------------------------QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE- 118 (584)
T ss_pred H-------------------------------------HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH-
Confidence 2 12235789999999999999999999999999886543221
Q ss_pred CchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeec
Q 022981 164 QSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 219 (289)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~ 219 (289)
....-|+|...+.+..|+..+++..+. .-.+++.+
T Consensus 119 -----------------tavvnvty~~~~~~~~ai~kl~g~Q~e----n~~~k~~Y 153 (584)
T KOG2193|consen 119 -----------------TAVVNVTYSAQQQHRQAIHKLNGPQLE----NQHLKVGY 153 (584)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHhhcchHhh----hhhhhccc
Confidence 123447788999999999999999998 45555544
No 128
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.73 E-value=3.6e-08 Score=78.70 Aligned_cols=79 Identities=19% Similarity=0.214 Sum_probs=68.5
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHHhc-CCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHH
Q 022981 121 RHSEYRVIVRGLPSSASWQDLKDHMRKA-GDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIR 199 (289)
Q Consensus 121 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~-g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 199 (289)
......++|..+|.-+.+..+...|.++ |.|....+.++.. ||.++|||||+|++.+.|.-|.+
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkr---------------TGNSKgYAFVEFEs~eVA~IaAE 110 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKR---------------TGNSKGYAFVEFESEEVAKIAAE 110 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccc---------------cCCcCceEEEEeccHHHHHHHHH
Confidence 3444578999999999999999999988 8888888888888 89999999999999999999999
Q ss_pred hcCCcccCCccccceeeee
Q 022981 200 KLDDTEFRNPWARGRITVK 218 (289)
Q Consensus 200 ~~~~~~~~~~~~g~~i~v~ 218 (289)
.||++.|. +.-|.+.
T Consensus 111 TMNNYLl~----e~lL~c~ 125 (214)
T KOG4208|consen 111 TMNNYLLM----EHLLECH 125 (214)
T ss_pred Hhhhhhhh----hheeeeE
Confidence 99999998 5554443
No 129
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.68 E-value=2.5e-08 Score=83.34 Aligned_cols=79 Identities=23% Similarity=0.332 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.+...+||+|+.+.+|.+++...|+.||.|..+.|..+ ++++|||||+|.+.+.++.|+. ||+..|.|+.+.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 46688999999999999999999999999998888553 5789999999999999999999 9999999999999988
Q ss_pred cCC
Q 022981 81 HGG 83 (289)
Q Consensus 81 ~~~ 83 (289)
.-.
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 744
No 130
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.63 E-value=2.7e-07 Score=66.23 Aligned_cols=76 Identities=17% Similarity=0.211 Sum_probs=62.9
Q ss_pred CeEEEcCCCCCccHHHHHHHHhhc--CCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeC----CceEEE
Q 022981 7 RTIYVGNLPSDIREYEVEDLFYKY--GRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFD----GCRLRV 77 (289)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~--G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~v 77 (289)
+||.|.|||...|.++|.+++... |..--+.++.| ..+.|||||-|.+++.|....+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 799999999999999999998753 44444555544 567899999999999999999999999885 467778
Q ss_pred EEccC
Q 022981 78 ELAHG 82 (289)
Q Consensus 78 ~~~~~ 82 (289)
.+|.-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 87763
No 131
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.58 E-value=5.9e-07 Score=64.43 Aligned_cols=82 Identities=15% Similarity=0.208 Sum_probs=64.4
Q ss_pred ceeeecCCCCCCCHHHHHHHHHhc--CCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcC
Q 022981 125 YRVIVRGLPSSASWQDLKDHMRKA--GDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLD 202 (289)
Q Consensus 125 ~~l~v~nlp~~~~~~~l~~~f~~~--g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~ 202 (289)
++|+|.|+|...++++|.+++... |....+.++.|-. ++.+.|||||.|.+++.|..-.+.++
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~---------------~~~N~GYAFVNf~~~~~~~~F~~~f~ 66 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFK---------------NKCNLGYAFVNFTSPQAAIRFYKAFN 66 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeecc---------------CCCceEEEEEEcCCHHHHHHHHHHHc
Confidence 589999999999999999998874 4444455555444 77899999999999999999999999
Q ss_pred CcccCCccccceeeeeccC
Q 022981 203 DTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 203 ~~~~~~~~~g~~i~v~~~~ 221 (289)
|.....-.......+..|+
T Consensus 67 g~~w~~~~s~Kvc~i~yAr 85 (97)
T PF04059_consen 67 GKKWPNFNSKKVCEISYAR 85 (97)
T ss_pred CCccccCCCCcEEEEehhH
Confidence 9997744445555555543
No 132
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.57 E-value=4.7e-07 Score=82.23 Aligned_cols=82 Identities=26% Similarity=0.324 Sum_probs=73.5
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhc
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKL 201 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 201 (289)
..+.+|+|.+|...+...+|+.+|++||.|.-++|+.+.. +.-.++|+||++.+.++|.+||+.|
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaR---------------sPGaRCYGfVTMSts~eAtkCI~hL 467 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNAR---------------SPGARCYGFVTMSTSAEATKCIEHL 467 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCC---------------CCCcceeEEEEecchHHHHHHHHHh
Confidence 3456899999999999999999999999999999988765 3345789999999999999999999
Q ss_pred CCcccCCccccceeeeeccCC
Q 022981 202 DDTEFRNPWARGRITVKRYDR 222 (289)
Q Consensus 202 ~~~~~~~~~~g~~i~v~~~~~ 222 (289)
|.+++. |+.|.|+.++.
T Consensus 468 HrTELH----GrmISVEkaKN 484 (940)
T KOG4661|consen 468 HRTELH----GRMISVEKAKN 484 (940)
T ss_pred hhhhhc----ceeeeeeeccc
Confidence 999999 99999998874
No 133
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.54 E-value=3.3e-07 Score=74.39 Aligned_cols=76 Identities=13% Similarity=0.128 Sum_probs=69.0
Q ss_pred ceeeecCCCCCCCHHHHHH----HHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 125 YRVIVRGLPSSASWQDLKD----HMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 125 ~~l~v~nlp~~~~~~~l~~----~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
.+|||.||+..+..++|+. +|++||.|..|...+. .+.+|-|||.|.+.+.|..|+..
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt------------------~KmRGQA~VvFk~~~~As~A~r~ 71 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT------------------PKMRGQAFVVFKETEAASAALRA 71 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC------------------CCccCceEEEecChhHHHHHHHH
Confidence 3999999999999999888 9999999988887773 35689999999999999999999
Q ss_pred cCCcccCCccccceeeeeccCC
Q 022981 201 LDDTEFRNPWARGRITVKRYDR 222 (289)
Q Consensus 201 ~~~~~~~~~~~g~~i~v~~~~~ 222 (289)
|+|..|. |.++++.++..
T Consensus 72 l~gfpFy----gK~mriqyA~s 89 (221)
T KOG4206|consen 72 LQGFPFY----GKPMRIQYAKS 89 (221)
T ss_pred hcCCccc----CchhheecccC
Confidence 9999999 99999999873
No 134
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.52 E-value=2.7e-07 Score=75.47 Aligned_cols=69 Identities=26% Similarity=0.467 Sum_probs=62.1
Q ss_pred eeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcc
Q 022981 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTE 205 (289)
Q Consensus 126 ~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~ 205 (289)
.+||++||+.+.+.+|..+|..||.+..+.+.. ||+||+|++..+|..|+..+++..
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~-----------------------gf~fv~fed~rda~Dav~~l~~~~ 59 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMKN-----------------------GFGFVEFEDPRDADDAVHDLDGKE 59 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceeec-----------------------ccceeccCchhhhhcccchhcCce
Confidence 689999999999999999999999998877655 799999999999999999999999
Q ss_pred cCCccccceeeeeccC
Q 022981 206 FRNPWARGRITVKRYD 221 (289)
Q Consensus 206 ~~~~~~g~~i~v~~~~ 221 (289)
+. +..+.|+.+.
T Consensus 60 l~----~e~~vve~~r 71 (216)
T KOG0106|consen 60 LC----GERLVVEHAR 71 (216)
T ss_pred ec----ceeeeeeccc
Confidence 98 5557777665
No 135
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.46 E-value=1.7e-07 Score=75.72 Aligned_cols=66 Identities=23% Similarity=0.372 Sum_probs=56.0
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCcee
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF 70 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 70 (289)
....||||.||.+++|+++|+++|+.|.-...++|..-+ .-..|||+|++.+.|..||..|+|..|
T Consensus 208 ~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~-g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 208 RACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARG-GMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCC-CcceEeecHHHHHHHHHHHHHhhccee
Confidence 456789999999999999999999999877666664322 245999999999999999999998776
No 136
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.39 E-value=6.7e-06 Score=71.58 Aligned_cols=167 Identities=17% Similarity=0.165 Sum_probs=114.5
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeE---EEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILD---IELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~---v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
+.+..|...+||...++.+|..||.-.-.... +-+...++.-|.|.|.|-++|.-+.|++ -+.+.+.++.|.|--+
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYka 136 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVYKA 136 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceeeecc
Confidence 45667888999999999999999975421111 1123345667899999999999999999 7888899999998876
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCC----eeEEEE
Q 022981 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGD----VCFAEV 156 (289)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~----v~~~~i 156 (289)
.....-. + .+++......-.+......|...+||+++++.++.++|..-.. +..+-+
T Consensus 137 ~ge~f~~---------i----------agg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLF 197 (508)
T KOG1365|consen 137 TGEEFLK---------I----------AGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLF 197 (508)
T ss_pred CchhheE---------e----------cCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEE
Confidence 5431000 0 0000011122223344557788999999999999999974333 334444
Q ss_pred eeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccC
Q 022981 157 SRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFR 207 (289)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~ 207 (289)
+..++| +..|-|||.|..+++|..|+. -|...++
T Consensus 198 V~rpdg----------------rpTGdAFvlfa~ee~aq~aL~-khrq~iG 231 (508)
T KOG1365|consen 198 VTRPDG----------------RPTGDAFVLFACEEDAQFALR-KHRQNIG 231 (508)
T ss_pred EECCCC----------------CcccceEEEecCHHHHHHHHH-HHHHHHh
Confidence 454443 678999999999999999997 3444444
No 137
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.39 E-value=1.2e-06 Score=73.18 Aligned_cols=79 Identities=20% Similarity=0.258 Sum_probs=71.2
Q ss_pred CcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcC
Q 022981 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLD 202 (289)
Q Consensus 123 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~ 202 (289)
....|+|.|||+.+.++||+++|..||.+..+-+..++.| .+.|.|-|.|...++|..|++.|+
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G----------------~s~Gta~v~~~r~~DA~~avk~~~ 145 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAG----------------RSLGTADVSFNRRDDAERAVKKYN 145 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCC----------------CCCccceeeecchHhHHHHHHHhc
Confidence 3468999999999999999999999999998888888876 678999999999999999999999
Q ss_pred CcccCCccccceeeeeccC
Q 022981 203 DTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 203 ~~~~~~~~~g~~i~v~~~~ 221 (289)
+..+. |.++++....
T Consensus 146 gv~ld----G~~mk~~~i~ 160 (243)
T KOG0533|consen 146 GVALD----GRPMKIEIIS 160 (243)
T ss_pred CcccC----CceeeeEEec
Confidence 98887 8888887665
No 138
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.38 E-value=2.7e-07 Score=74.37 Aligned_cols=77 Identities=13% Similarity=0.151 Sum_probs=67.5
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhc
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKL 201 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 201 (289)
....+|||+|+...++++-|.++|-+.|+|..+.|+.+.++ +.+ ||||+|+++.....|++.+
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~----------------~~k-Fa~v~f~~E~sv~~a~~L~ 69 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQ----------------EQK-FAYVFFPNENSVQLAGQLE 69 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccC----------------CCc-eeeeecccccchhhhhhhc
Confidence 45669999999999999999999999999999999998885 344 9999999999999999999
Q ss_pred CCcccCCccccceeeeec
Q 022981 202 DDTEFRNPWARGRITVKR 219 (289)
Q Consensus 202 ~~~~~~~~~~g~~i~v~~ 219 (289)
+|..+. +.+|.+..
T Consensus 70 ng~~l~----~~e~q~~~ 83 (267)
T KOG4454|consen 70 NGDDLE----EDEEQRTL 83 (267)
T ss_pred ccchhc----cchhhccc
Confidence 999887 55555553
No 139
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.33 E-value=2.4e-06 Score=73.38 Aligned_cols=80 Identities=25% Similarity=0.367 Sum_probs=69.3
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHhcCCeeE--------EEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHH
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF--------AEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPED 193 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~--------~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~ 193 (289)
.-++.|||.|||.++|.+++.++|.+||.|.. |.+.++.. |..+|-|.+.|...++
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~----------------G~lKGDaLc~y~K~ES 195 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ----------------GKLKGDALCCYIKRES 195 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC----------------CCccCceEEEeecccH
Confidence 34557999999999999999999999998743 34444444 5789999999999999
Q ss_pred HHHHHHhcCCcccCCccccceeeeeccC
Q 022981 194 MKYAIRKLDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 194 a~~a~~~~~~~~~~~~~~g~~i~v~~~~ 221 (289)
..-|++.|++..+. |..|+|+.|.
T Consensus 196 VeLA~~ilDe~~~r----g~~~rVerAk 219 (382)
T KOG1548|consen 196 VELAIKILDEDELR----GKKLRVERAK 219 (382)
T ss_pred HHHHHHHhCccccc----CcEEEEehhh
Confidence 99999999999999 9999999886
No 140
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.32 E-value=7.3e-07 Score=73.43 Aligned_cols=78 Identities=17% Similarity=0.299 Sum_probs=68.0
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEc---cCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELK---IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~---~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
...-.||.|.|..+++.+-|...|.+|-.-...+++ .+++++||+||.|.++.++..||.+|+|..++.++|++.-+
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 455689999999999999999999999766666664 46899999999999999999999999999999999987644
Q ss_pred c
Q 022981 81 H 81 (289)
Q Consensus 81 ~ 81 (289)
.
T Consensus 268 ~ 268 (290)
T KOG0226|consen 268 E 268 (290)
T ss_pred h
Confidence 3
No 141
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.31 E-value=3.8e-06 Score=57.60 Aligned_cols=69 Identities=23% Similarity=0.388 Sum_probs=48.4
Q ss_pred CeEEEcCCCCCccHHHH----HHHHhhcC-CeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 7 RTIYVGNLPSDIREYEV----EDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 7 ~~l~V~nLp~~~t~~~L----~~~F~~~G-~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
..|+|.|||.+.....| ++++..|| +|..| . .+.|.|.|.+++.|.+|.+.|+|..+.|+.|.|.+..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~-----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S-----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e-----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 46999999999877665 55666776 77666 2 4799999999999999999999999999999999985
Q ss_pred C
Q 022981 82 G 82 (289)
Q Consensus 82 ~ 82 (289)
.
T Consensus 76 ~ 76 (90)
T PF11608_consen 76 K 76 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 142
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.28 E-value=2.8e-06 Score=73.05 Aligned_cols=83 Identities=19% Similarity=0.143 Sum_probs=66.6
Q ss_pred CCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHH
Q 022981 116 RFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMK 195 (289)
Q Consensus 116 ~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~ 195 (289)
...+......+|||++|...+++.+|.++|.+||.|.++.+.... ++|||+|.+.+.|+
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~---------------------~CAFv~ftTR~aAE 278 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK---------------------GCAFVTFTTREAAE 278 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc---------------------ccceeeehhhHHHH
Confidence 344555667799999999999999999999999999999988753 48999999999999
Q ss_pred HHHHhcCCcccCCccccceeeeeccCC
Q 022981 196 YAIRKLDDTEFRNPWARGRITVKRYDR 222 (289)
Q Consensus 196 ~a~~~~~~~~~~~~~~g~~i~v~~~~~ 222 (289)
.|.++.-...+-+ |..|.|.....
T Consensus 279 ~Aae~~~n~lvI~---G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 279 KAAEKSFNKLVIN---GFRLKIKWGRP 302 (377)
T ss_pred HHHHhhcceeeec---ceEEEEEeCCC
Confidence 8887655544332 78888875443
No 143
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.23 E-value=3e-06 Score=79.72 Aligned_cols=76 Identities=16% Similarity=0.217 Sum_probs=67.8
Q ss_pred cceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCC
Q 022981 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDD 203 (289)
Q Consensus 124 ~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~ 203 (289)
.+||||+.|+..++++||..+|+.||.|.++.+... +++|||.+....+|.+|+.+|.+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~---------------------R~cAfI~M~~RqdA~kalqkl~n 479 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP---------------------RGCAFIKMVRRQDAEKALQKLSN 479 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC---------------------CceeEEEEeehhHHHHHHHHHhc
Confidence 459999999999999999999999999999888764 56999999999999999999999
Q ss_pred cccCCccccceeeeeccCCCC
Q 022981 204 TEFRNPWARGRITVKRYDRSP 224 (289)
Q Consensus 204 ~~~~~~~~g~~i~v~~~~~~~ 224 (289)
..+. +..|++..+-...
T Consensus 480 ~kv~----~k~Iki~Wa~g~G 496 (894)
T KOG0132|consen 480 VKVA----DKTIKIAWAVGKG 496 (894)
T ss_pred cccc----ceeeEEeeeccCC
Confidence 9888 8888888776443
No 144
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.17 E-value=2.5e-06 Score=71.43 Aligned_cols=81 Identities=17% Similarity=0.173 Sum_probs=73.4
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 121 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
..+...++|+|+.+.++.+++..+|+.||.|..+.|..+.. +|.++||+||+|.+.+.++.|+.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~---------------~~~~k~~~yvef~~~~~~~~ay~- 161 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKF---------------RGHPKGFAYVEFSSYELVEEAYK- 161 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeecccc---------------CCCcceeEEEecccHhhhHHHhh-
Confidence 34566899999999999999999999999999999999888 56789999999999999999999
Q ss_pred cCCcccCCccccceeeeeccC
Q 022981 201 LDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 201 ~~~~~~~~~~~g~~i~v~~~~ 221 (289)
|++..+. +..|.|....
T Consensus 162 l~gs~i~----~~~i~vt~~r 178 (231)
T KOG4209|consen 162 LDGSEIP----GPAIEVTLKR 178 (231)
T ss_pred cCCcccc----cccceeeeee
Confidence 9999999 8888887765
No 145
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.17 E-value=1.2e-05 Score=72.58 Aligned_cols=79 Identities=19% Similarity=0.326 Sum_probs=64.8
Q ss_pred cceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCC
Q 022981 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDD 203 (289)
Q Consensus 124 ~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~ 203 (289)
...|||.|||.+++..+|.++|..||.|+...|.....+ +.+.+||||+|++.+.+..|+++- -
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~---------------~~~~~fgFV~f~~~~~~~~~i~As-p 351 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPG---------------GKNPCFGFVEFENAAAVQNAIEAS-P 351 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccC---------------CCcCceEEEEEeecchhhhhhhcC-c
Confidence 346999999999999999999999999999888765532 133499999999999999999865 4
Q ss_pred cccCCccccceeeeeccCC
Q 022981 204 TEFRNPWARGRITVKRYDR 222 (289)
Q Consensus 204 ~~~~~~~~g~~i~v~~~~~ 222 (289)
..++ ++.+.|+....
T Consensus 352 ~~ig----~~kl~Veek~~ 366 (419)
T KOG0116|consen 352 LEIG----GRKLNVEEKRP 366 (419)
T ss_pred cccC----CeeEEEEeccc
Confidence 4444 88898887654
No 146
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.17 E-value=5.2e-06 Score=60.88 Aligned_cols=71 Identities=13% Similarity=0.285 Sum_probs=45.2
Q ss_pred CeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhC-----CceeCCceEEEEEc
Q 022981 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD-----GYNFDGCRLRVELA 80 (289)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~l~v~~~ 80 (289)
..|+|.+++..++.++|+++|+.||.|..|.+... -..|||-|.++++|+.|+..+. +..+.+..+.+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G---~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vL 77 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG---DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVL 77 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT----SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE--
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC---CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEEC
Confidence 46899999999999999999999999999988653 3489999999999999998773 34566777766654
No 147
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.09 E-value=8.6e-06 Score=76.02 Aligned_cols=90 Identities=14% Similarity=0.100 Sum_probs=72.7
Q ss_pred CCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHH
Q 022981 115 GRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDM 194 (289)
Q Consensus 115 ~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a 194 (289)
+.+.......++|||+||++.++++.|...|..||+|..+.|+.+...- ..-....+|||.|.+..+|
T Consensus 165 gsfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEe------------Ek~r~r~cgfvafmnR~D~ 232 (877)
T KOG0151|consen 165 GSFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEE------------EKRRERNCGFVAFMNRADA 232 (877)
T ss_pred CcCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchh------------hhccccccceeeehhhhhH
Confidence 4444445567799999999999999999999999999999999865421 1123467999999999999
Q ss_pred HHHHHhcCCcccCCccccceeeeecc
Q 022981 195 KYAIRKLDDTEFRNPWARGRITVKRY 220 (289)
Q Consensus 195 ~~a~~~~~~~~~~~~~~g~~i~v~~~ 220 (289)
++|++.|+|..+. ...+++-..
T Consensus 233 era~k~lqg~iv~----~~e~K~gWg 254 (877)
T KOG0151|consen 233 ERALKELQGIIVM----EYEMKLGWG 254 (877)
T ss_pred HHHHHHhcceeee----eeeeeeccc
Confidence 9999999999988 666665544
No 148
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.08 E-value=3.9e-06 Score=72.61 Aligned_cols=80 Identities=29% Similarity=0.384 Sum_probs=70.1
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeE--------EEE---ccCCCCCceEEEEEccHHHHHHHHHHhCCceeCC
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILD--------IEL---KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~--------v~~---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 72 (289)
...-+|||.+||..+++++|.++|.+||.|.. |+| +.|+.+|+-|.|.|.+...|+.|+..+++..|.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 35678999999999999999999999998843 333 3357889999999999999999999999999999
Q ss_pred ceEEEEEccCC
Q 022981 73 CRLRVELAHGG 83 (289)
Q Consensus 73 ~~l~v~~~~~~ 83 (289)
..|+|-++...
T Consensus 144 n~ikvs~a~~r 154 (351)
T KOG1995|consen 144 NTIKVSLAERR 154 (351)
T ss_pred CCchhhhhhhc
Confidence 99999888754
No 149
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.96 E-value=2e-05 Score=68.35 Aligned_cols=91 Identities=21% Similarity=0.240 Sum_probs=74.4
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 121 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
.....+|||.+||..++.++|.++|.+||.|.. ++.+. -|.|.+|+-- .|+.+++-|.|.|++...|+.|+.-
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikr-----nK~t~-kPki~~y~dk-eT~~~KGeatvS~~D~~~akaai~~ 135 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKR-----NKRTG-KPKIKIYTDK-ETGAPKGEATVSYEDPPAAKAAIEW 135 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceecc-----CCCCC-Ccchhccccc-cccCcCCceeeeecChhhhhhhhhh
Confidence 445669999999999999999999999988753 22221 2445667655 7999999999999999999999999
Q ss_pred cCCcccCCccccceeeeeccCC
Q 022981 201 LDDTEFRNPWARGRITVKRYDR 222 (289)
Q Consensus 201 ~~~~~~~~~~~g~~i~v~~~~~ 222 (289)
++++.|. +..|+|..+..
T Consensus 136 ~agkdf~----gn~ikvs~a~~ 153 (351)
T KOG1995|consen 136 FAGKDFC----GNTIKVSLAER 153 (351)
T ss_pred hcccccc----CCCchhhhhhh
Confidence 9999999 68888877653
No 150
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.95 E-value=2.9e-05 Score=49.43 Aligned_cols=53 Identities=30% Similarity=0.548 Sum_probs=43.7
Q ss_pred CCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHH
Q 022981 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAI 62 (289)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~ 62 (289)
++.|-|.+.+++..+. |...|..||+|.++.+.. .....||.|.+..+|++||
T Consensus 1 ~~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~---~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPE---STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCC---CCcEEEEEECCHHHHHhhC
Confidence 3578899999888755 455888999999998862 2569999999999999985
No 151
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.95 E-value=1.1e-05 Score=69.78 Aligned_cols=80 Identities=21% Similarity=0.353 Sum_probs=71.0
Q ss_pred CCCCCeEE-EcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEE
Q 022981 3 GRFSRTIY-VGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (289)
Q Consensus 3 ~~~~~~l~-V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 78 (289)
..+..++| |++|+..++.++|...|..+|.|..+.+.. ++..+|||||+|.+...+..++.. +...+.++++.+.
T Consensus 181 ~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 259 (285)
T KOG4210|consen 181 SGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLE 259 (285)
T ss_pred cCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccc
Confidence 34566677 999999999999999999999999999954 468899999999999999999986 8899999999999
Q ss_pred EccCC
Q 022981 79 LAHGG 83 (289)
Q Consensus 79 ~~~~~ 83 (289)
...+.
T Consensus 260 ~~~~~ 264 (285)
T KOG4210|consen 260 EDEPR 264 (285)
T ss_pred cCCCC
Confidence 88765
No 152
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.95 E-value=2.2e-05 Score=67.29 Aligned_cols=75 Identities=24% Similarity=0.453 Sum_probs=61.4
Q ss_pred CeEEEcCCCCCccHHHH------HHHHhhcCCeeEEEEcc-C---CCCCceE--EEEEccHHHHHHHHHHhCCceeCCce
Q 022981 7 RTIYVGNLPSDIREYEV------EDLFYKYGRILDIELKI-P---PRPPCYC--FVEFENARDAEDAIRGRDGYNFDGCR 74 (289)
Q Consensus 7 ~~l~V~nLp~~~t~~~L------~~~F~~~G~i~~v~~~~-~---~~~~g~a--fV~f~~~~~A~~A~~~l~g~~~~g~~ 74 (289)
.-+||-+||+.+..+++ .++|.+||.|..|-+.. + ...-+.+ ||+|.+.|+|..||+..+|..++|+.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 45899999999887773 57899999999998843 2 1122334 99999999999999999999999999
Q ss_pred EEEEEcc
Q 022981 75 LRVELAH 81 (289)
Q Consensus 75 l~v~~~~ 81 (289)
|+..+..
T Consensus 195 lkatYGT 201 (480)
T COG5175 195 LKATYGT 201 (480)
T ss_pred EeeecCc
Confidence 9988765
No 153
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.88 E-value=1.7e-05 Score=72.24 Aligned_cols=72 Identities=19% Similarity=0.239 Sum_probs=61.7
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 121 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
..+..+|+|-|||..++.++|..+|+.||+|..+..-... .+..||+|-+..+|+.|++.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~--------------------~~~~~v~FyDvR~A~~Alk~ 131 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK--------------------RGIVFVEFYDVRDAERALKA 131 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc--------------------CceEEEEEeehHhHHHHHHH
Confidence 3455699999999999999999999999999885554443 47899999999999999999
Q ss_pred cCCcccCCccccceee
Q 022981 201 LDDTEFRNPWARGRIT 216 (289)
Q Consensus 201 ~~~~~~~~~~~g~~i~ 216 (289)
|++.++. +..|+
T Consensus 132 l~~~~~~----~~~~k 143 (549)
T KOG4660|consen 132 LNRREIA----GKRIK 143 (549)
T ss_pred HHHHHhh----hhhhc
Confidence 9999998 55554
No 154
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.83 E-value=6.2e-05 Score=62.36 Aligned_cols=107 Identities=25% Similarity=0.269 Sum_probs=90.2
Q ss_pred HHHHHHHHhCCceeCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCC
Q 022981 57 DAEDAIRGRDGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSA 136 (289)
Q Consensus 57 ~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~ 136 (289)
-|..|-.+|++....|+.|.|.|+... .|+|.||..-+
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~a------------------------------------------~l~V~nl~~~~ 43 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMHA------------------------------------------ELYVVNLMQGA 43 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeeccc------------------------------------------eEEEEecchhh
Confidence 456677779999999999999998754 89999999999
Q ss_pred CHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceee
Q 022981 137 SWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 216 (289)
Q Consensus 137 ~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~ 216 (289)
+-+.+.+.|..||+|....+..+..+ +..+-++|+|...-.|.+|+......-+..+-++.+..
T Consensus 44 sndll~~~f~~fg~~e~av~~vD~r~----------------k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~ 107 (275)
T KOG0115|consen 44 SNDLLEQAFRRFGPIERAVAKVDDRG----------------KPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVG 107 (275)
T ss_pred hhHHHHHhhhhcCccchheeeecccc----------------cccccchhhhhcchhHHHHHHHhccCccccCCCCCccC
Confidence 99999999999999999888887775 56789999999999999999988666666555566666
Q ss_pred eeccC
Q 022981 217 VKRYD 221 (289)
Q Consensus 217 v~~~~ 221 (289)
|....
T Consensus 108 VeP~e 112 (275)
T KOG0115|consen 108 VEPME 112 (275)
T ss_pred CChhh
Confidence 66543
No 155
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.81 E-value=3e-05 Score=56.89 Aligned_cols=59 Identities=27% Similarity=0.503 Sum_probs=40.3
Q ss_pred ceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCc
Q 022981 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDT 204 (289)
Q Consensus 125 ~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 204 (289)
+.|+|.+++..++.++|++.|..+|.|.+|++..... .|||.|.+.+.|+.|++.+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~---------------------~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT---------------------EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S---------------------EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC---------------------EEEEEECCcchHHHHHHHHHhc
Confidence 4788999999999999999999999999999988655 6999999999999999877665
No 156
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=5.1e-05 Score=69.33 Aligned_cols=76 Identities=25% Similarity=0.383 Sum_probs=60.5
Q ss_pred CCeEEEcCCCCCc------cHHHHHHHHhhcCCeeEEEEccC--CCCCceEEEEEccHHHHHHHHHHhCCceeC-CceEE
Q 022981 6 SRTIYVGNLPSDI------REYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFD-GCRLR 76 (289)
Q Consensus 6 ~~~l~V~nLp~~~------t~~~L~~~F~~~G~i~~v~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~ 76 (289)
...|+|.|+|.-- -..-|..+|+++|+|..+.+..+ +.++||.|++|++..+|+.|++.|||..|+ .+.+.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 4578899988642 22345668999999999999753 678999999999999999999999999985 46666
Q ss_pred EEEcc
Q 022981 77 VELAH 81 (289)
Q Consensus 77 v~~~~ 81 (289)
|..-+
T Consensus 138 v~~f~ 142 (698)
T KOG2314|consen 138 VRLFK 142 (698)
T ss_pred eehhh
Confidence 65544
No 157
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.80 E-value=1e-05 Score=67.02 Aligned_cols=63 Identities=22% Similarity=0.291 Sum_probs=53.5
Q ss_pred HHHHHHHh-hcCCeeEEEEcc--CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCC
Q 022981 21 YEVEDLFY-KYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (289)
Q Consensus 21 ~~L~~~F~-~~G~i~~v~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (289)
+||...|+ +||+|+.++|.. ..+..|-+||.|..+++|++|++.||+..|.|++|..+++.-.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 45555555 899999998733 3467899999999999999999999999999999999998754
No 158
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.78 E-value=3.6e-05 Score=70.65 Aligned_cols=77 Identities=12% Similarity=0.228 Sum_probs=66.6
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHh-hcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCcee---CCceEEEEE
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFY-KYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF---DGCRLRVEL 79 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~-~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~v~~ 79 (289)
++++.|+|.||---.|.-+|++++. .+|.|.+++| .+-+..|||.|.+.++|.....+|||..+ +++.|.|.|
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm---DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM---DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHH---HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 6789999999999999999999999 5778888755 23377999999999999999999999998 568899999
Q ss_pred ccCC
Q 022981 80 AHGG 83 (289)
Q Consensus 80 ~~~~ 83 (289)
....
T Consensus 519 ~~~d 522 (718)
T KOG2416|consen 519 VRAD 522 (718)
T ss_pred cchh
Confidence 8744
No 159
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.77 E-value=0.00018 Score=52.05 Aligned_cols=75 Identities=20% Similarity=0.294 Sum_probs=53.5
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEc----------cCCCCCceEEEEEccHHHHHHHHHHhCCceeCCce
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELK----------IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR 74 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~----------~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 74 (289)
.++-|.|-+.|+. ....|.+.|++||.|.+..-. ..........|+|.++.+|.+||. .||..|.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 4567888899998 457888999999999887510 001235689999999999999999 8999999865
Q ss_pred EE-EEEcc
Q 022981 75 LR-VELAH 81 (289)
Q Consensus 75 l~-v~~~~ 81 (289)
|- |.+++
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 54 66653
No 160
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.67 E-value=9.6e-06 Score=70.78 Aligned_cols=64 Identities=20% Similarity=0.189 Sum_probs=53.8
Q ss_pred CCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeC
Q 022981 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (289)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 71 (289)
.+||+|++|+..+-..++.++|..+|.|....+.. +....+|.|+|....+...|+. ++|..+.
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as-k~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTAS-KSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc-cCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 47899999999999999999999999998776632 2335688899999999999999 7776665
No 161
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.65 E-value=2.9e-05 Score=64.30 Aligned_cols=69 Identities=17% Similarity=0.299 Sum_probs=58.8
Q ss_pred CCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCC-----------CCC----ceEEEEEccHHHHHHHHHHhCCcee
Q 022981 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP-----------RPP----CYCFVEFENARDAEDAIRGRDGYNF 70 (289)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~-----------~~~----g~afV~f~~~~~A~~A~~~l~g~~~ 70 (289)
.-.||+++||+.+...-|+++|++||.|-.|+|.... .++ --|+|+|.....|..+...||+..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 4579999999999999999999999999999994321 111 2578999999999999999999999
Q ss_pred CCce
Q 022981 71 DGCR 74 (289)
Q Consensus 71 ~g~~ 74 (289)
+|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9864
No 162
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.64 E-value=0.00019 Score=59.67 Aligned_cols=62 Identities=16% Similarity=0.174 Sum_probs=51.7
Q ss_pred HHHHHHHH-hcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeee
Q 022981 139 QDLKDHMR-KAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 217 (289)
Q Consensus 139 ~~l~~~f~-~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v 217 (289)
++|...|. +||.|+.+.|..+... .-.|-+||.|...++|++|++.|++..|. |.+|..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~----------------hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~----G~pi~a 142 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGD----------------HLVGNVYVKFRSEEDAEAALEDLNNRWYN----GRPIHA 142 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccch----------------hhhhhhhhhcccHHHHHHHHHHHcCcccc----CCccee
Confidence 56777777 8999999887776552 33678999999999999999999999999 898887
Q ss_pred ecc
Q 022981 218 KRY 220 (289)
Q Consensus 218 ~~~ 220 (289)
+..
T Consensus 143 e~~ 145 (260)
T KOG2202|consen 143 ELS 145 (260)
T ss_pred eec
Confidence 753
No 163
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.58 E-value=4.8e-05 Score=67.28 Aligned_cols=64 Identities=28% Similarity=0.264 Sum_probs=55.0
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC--------CC--------CCceEEEEEccHHHHHHHHHHhCCc
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--------PR--------PPCYCFVEFENARDAEDAIRGRDGY 68 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~--------~~--------~~g~afV~f~~~~~A~~A~~~l~g~ 68 (289)
++++|.+.|||.+-.-+.|.++|+.||.|+.|.|... +. .+-+|+|+|.+.+.|.+|.+.|+..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 7899999999999999999999999999999999443 11 2458999999999999999966443
No 164
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.51 E-value=0.00017 Score=69.06 Aligned_cols=78 Identities=15% Similarity=0.170 Sum_probs=70.5
Q ss_pred CCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEc--cCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCC
Q 022981 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELK--IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (289)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~--~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (289)
...|+|.|+|+..|.++|+.++.++|.+.++.++ ..++++|.|||.|.++.+|..++...+...+.-+.+.|..+++.
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~ 815 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPE 815 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCc
Confidence 3568999999999999999999999999998874 35899999999999999999999999999999899999887763
No 165
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.45 E-value=0.0005 Score=59.43 Aligned_cols=75 Identities=13% Similarity=0.139 Sum_probs=63.6
Q ss_pred CeEEEcCCCCCccHHHHHHHHhhcC--CeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 7 RTIYVGNLPSDIREYEVEDLFYKYG--RILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G--~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
..+|||||-+.+|++||.+.+...| .+.++++.. .+.+||||+|..-...+.++.|+.|-...|+|+.-.|...+
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 4689999999999999999998776 566777743 47999999999999999999999999999999776665443
No 166
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.45 E-value=0.00059 Score=62.04 Aligned_cols=60 Identities=25% Similarity=0.366 Sum_probs=55.6
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHh-hcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHH
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFY-KYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIR 63 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~-~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~ 63 (289)
++.+|||||+||--++.++|..+|+ -||.|..+-|=.| +.++|-|=|+|.+..+-.+||.
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 7899999999999999999999999 6999999988555 5789999999999999999998
No 167
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.41 E-value=0.0011 Score=50.90 Aligned_cols=74 Identities=20% Similarity=0.277 Sum_probs=53.7
Q ss_pred CCCCeEEEcCCC-----CCccH----HHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCce
Q 022981 4 RFSRTIYVGNLP-----SDIRE----YEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR 74 (289)
Q Consensus 4 ~~~~~l~V~nLp-----~~~t~----~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 74 (289)
.|..||.|.=+. ...-. ++|.+.|..||.|.=|++.. +.-+|+|.+-+.|.+|+. |+|..+.|+.
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~-----~~mwVTF~dg~sALaals-~dg~~v~g~~ 98 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG-----DTMWVTFRDGQSALAALS-LDGIQVNGRT 98 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET-----TCEEEEESSCHHHHHHHH-GCCSEETTEE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC-----CeEEEEECccHHHHHHHc-cCCcEECCEE
Confidence 677787775554 11222 36777899999998888873 467999999999999999 9999999999
Q ss_pred EEEEEccCC
Q 022981 75 LRVELAHGG 83 (289)
Q Consensus 75 l~v~~~~~~ 83 (289)
|+|....+.
T Consensus 99 l~i~LKtpd 107 (146)
T PF08952_consen 99 LKIRLKTPD 107 (146)
T ss_dssp EEEEE----
T ss_pred EEEEeCCcc
Confidence 999987654
No 168
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.37 E-value=0.00027 Score=68.07 Aligned_cols=77 Identities=23% Similarity=0.335 Sum_probs=69.7
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCC--ceEEEEEcc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVELAH 81 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~~~ 81 (289)
.+++.+||++|.+.+....|...|..||+|..|.+-.. .-||||+|++...|+.|+..|-|..|++ +.|.|.++.
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg---q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG---QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC---CcceeeecccCccchhhHHHHhcCcCCCCCccccccccc
Confidence 57889999999999999999999999999999887543 5699999999999999999999999976 779999988
Q ss_pred CC
Q 022981 82 GG 83 (289)
Q Consensus 82 ~~ 83 (289)
..
T Consensus 530 ~~ 531 (975)
T KOG0112|consen 530 PP 531 (975)
T ss_pred CC
Confidence 65
No 169
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.35 E-value=0.0011 Score=45.76 Aligned_cols=68 Identities=18% Similarity=0.265 Sum_probs=46.7
Q ss_pred ceeeecCCCCCCCHHH----HHHHHHhcC-CeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHH
Q 022981 125 YRVIVRGLPSSASWQD----LKDHMRKAG-DVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIR 199 (289)
Q Consensus 125 ~~l~v~nlp~~~~~~~----l~~~f~~~g-~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 199 (289)
..|+|.|||.+.+... |++++..|| .|..+. .+.|+|.|.+.+.|.+|.+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-------------------------~~tAilrF~~~~~A~RA~K 57 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-------------------------GGTAILRFPNQEFAERAQK 57 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------------------------TT-EEEEESSHHHHHHHHH
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-------------------------CCEEEEEeCCHHHHHHHHH
Confidence 3689999999988754 667777775 564431 2569999999999999999
Q ss_pred hcCCcccCCccccceeeeeccC
Q 022981 200 KLDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 200 ~~~~~~~~~~~~g~~i~v~~~~ 221 (289)
.|+|..+- |..|.|....
T Consensus 58 RmegEdVf----G~kI~v~~~~ 75 (90)
T PF11608_consen 58 RMEGEDVF----GNKISVSFSP 75 (90)
T ss_dssp HHTT--SS----SS--EEESS-
T ss_pred hhcccccc----cceEEEEEcC
Confidence 99999988 8999998774
No 170
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.16 E-value=0.0012 Score=55.85 Aligned_cols=62 Identities=26% Similarity=0.347 Sum_probs=50.9
Q ss_pred HHHHHHHHhhcCCeeEEEEccCC----CCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 20 EYEVEDLFYKYGRILDIELKIPP----RPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 20 ~~~L~~~F~~~G~i~~v~~~~~~----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
++++.+...+||.|..|.|.... .-.--.||+|...++|.+|+-.|||..|+|+.+..+|-+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 45667788999999998885431 223468999999999999999999999999999988754
No 171
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.11 E-value=0.0014 Score=60.20 Aligned_cols=68 Identities=26% Similarity=0.367 Sum_probs=58.3
Q ss_pred cceeeecCCCCCCCH------HHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHH
Q 022981 124 EYRVIVRGLPSSASW------QDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYA 197 (289)
Q Consensus 124 ~~~l~v~nlp~~~~~------~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 197 (289)
...|+|.|+|---.. ..|..+|+++|++..+.++.+..| ..+||.|++|.+..+|..|
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~g----------------gtkG~lf~E~~~~~~A~~a 121 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEG----------------GTKGYLFVEYASMRDAKKA 121 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccC----------------CeeeEEEEEecChhhHHHH
Confidence 458899999854332 357889999999999999988775 4799999999999999999
Q ss_pred HHhcCCcccC
Q 022981 198 IRKLDDTEFR 207 (289)
Q Consensus 198 ~~~~~~~~~~ 207 (289)
++.|||+.+.
T Consensus 122 VK~l~G~~ld 131 (698)
T KOG2314|consen 122 VKSLNGKRLD 131 (698)
T ss_pred HHhcccceec
Confidence 9999999987
No 172
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.07 E-value=0.0014 Score=41.60 Aligned_cols=51 Identities=18% Similarity=0.349 Sum_probs=40.5
Q ss_pred eeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHH
Q 022981 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAI 198 (289)
Q Consensus 126 ~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~ 198 (289)
.|.|.+.+....+ .+..+|..||.|..+.+... ....+|.|.+..+|+.|+
T Consensus 3 wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~---------------------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 3 WISVSGFPPDLAE-EVLEHFASFGEIVDIYVPES---------------------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred EEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCC---------------------CcEEEEEECCHHHHHhhC
Confidence 5778888876654 56669999999998877732 248999999999999985
No 173
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.91 E-value=0.0061 Score=42.00 Aligned_cols=54 Identities=17% Similarity=0.294 Sum_probs=41.7
Q ss_pred CeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhC
Q 022981 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66 (289)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 66 (289)
+..+|+ +|......||.++|+.||.|.--+|-. .-|||...+.+.|..|+..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~d-----TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIND-----TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEECT-----TEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEEcC-----CcEEEEeecHHHHHHHHHHhc
Confidence 445564 999999999999999999986666643 489999999999999998775
No 174
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.84 E-value=0.0013 Score=58.47 Aligned_cols=76 Identities=16% Similarity=0.233 Sum_probs=58.3
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC---C-CCCc-hhHHHhhhhhcccccceEEEEecCChHHHH
Q 022981 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS---E-GWQS-PAMILLTLNFLCVYSGTYGVVDYTNPEDMK 195 (289)
Q Consensus 121 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~---~-~~~~-~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~ 195 (289)
..+..+|.+.|||.+-..+.|.++|..+|.|..|.|.++. . .... +.+.+. ..+.+|+|+|+..+.|.
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~-------~tk~~AlvEye~~~~A~ 300 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFEL-------QTKECALVEYEEVEAAR 300 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhh-------hhhhhhhhhhhhhHHHH
Confidence 3466799999999999999999999999999999999872 2 1100 001111 12568999999999999
Q ss_pred HHHHhcCC
Q 022981 196 YAIRKLDD 203 (289)
Q Consensus 196 ~a~~~~~~ 203 (289)
+|.+.++.
T Consensus 301 KA~e~~~~ 308 (484)
T KOG1855|consen 301 KARELLNP 308 (484)
T ss_pred HHHHhhch
Confidence 99997754
No 175
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.79 E-value=0.0091 Score=45.41 Aligned_cols=74 Identities=18% Similarity=0.127 Sum_probs=57.0
Q ss_pred CCCCCeEEEcCCCCCc----cHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEE
Q 022981 3 GRFSRTIYVGNLPSDI----REYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (289)
Q Consensus 3 ~~~~~~l~V~nLp~~~----t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 78 (289)
+.|-.||.|.=|..++ +...|...++.||+|..|.+.- +.-|.|.|.+..+|.+|+.+++. ...|..+++.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG----rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG----RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC----CceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 4566788887666654 3334555678899999997752 56899999999999999998865 6678888888
Q ss_pred Ecc
Q 022981 79 LAH 81 (289)
Q Consensus 79 ~~~ 81 (289)
|-.
T Consensus 158 Wqq 160 (166)
T PF15023_consen 158 WQQ 160 (166)
T ss_pred ccc
Confidence 754
No 176
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.69 E-value=0.0055 Score=52.96 Aligned_cols=83 Identities=14% Similarity=0.141 Sum_probs=63.3
Q ss_pred CCcceeeecCCCCCCCHHH------HHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHH
Q 022981 122 HSEYRVIVRGLPSSASWQD------LKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMK 195 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~------l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~ 195 (289)
....-+||-+||+.+..++ -.++|.+||.|..+.|.+..... ..| ...--+||+|.+.++|.
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~-----------nst-~~h~gvYITy~~kedAa 179 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSL-----------NST-ASHAGVYITYSTKEDAA 179 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEeccccccc-----------ccc-cccceEEEEecchHHHH
Confidence 3445789999999988776 36899999999998888754310 001 11123599999999999
Q ss_pred HHHHhcCCcccCCccccceeeeecc
Q 022981 196 YAIRKLDDTEFRNPWARGRITVKRY 220 (289)
Q Consensus 196 ~a~~~~~~~~~~~~~~g~~i~v~~~ 220 (289)
.||.+.+|..+. |+.|+..+.
T Consensus 180 rcIa~vDgs~~D----Gr~lkatYG 200 (480)
T COG5175 180 RCIAEVDGSLLD----GRVLKATYG 200 (480)
T ss_pred HHHHHhcccccc----CceEeeecC
Confidence 999999999998 888887754
No 177
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.47 E-value=0.0039 Score=50.23 Aligned_cols=79 Identities=19% Similarity=0.185 Sum_probs=52.1
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhh-cCCe---eEEEEccC-----CCCCceEEEEEccHHHHHHHHHHhCCceeCC--
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYK-YGRI---LDIELKIP-----PRPPCYCFVEFENARDAEDAIRGRDGYNFDG-- 72 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~i---~~v~~~~~-----~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-- 72 (289)
.....|.|.+||+.+|++++.+.++. ++.. ..+.-... .....-|||.|.+.+++...+..++|..|.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 45668999999999999999997776 6665 33331111 2234689999999999999999999988843
Q ss_pred ---ceEEEEEccC
Q 022981 73 ---CRLRVELAHG 82 (289)
Q Consensus 73 ---~~l~v~~~~~ 82 (289)
....|++|..
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 3456777764
No 178
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.44 E-value=0.026 Score=41.65 Aligned_cols=68 Identities=12% Similarity=0.067 Sum_probs=51.2
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcC-CeeEEEEccCCC-CCceEEEEEccHHHHHHHHHHhCCceeCC
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYG-RILDIELKIPPR-PPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G-~i~~v~~~~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~g 72 (289)
....+.+...|..++.++|..+.+.+- .|..++|+.++. ++-.+.+.|.+.++|+.....+||+.|..
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 344555555666677777776666553 677888888764 45688999999999999999999998853
No 179
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=96.16 E-value=0.045 Score=37.29 Aligned_cols=66 Identities=21% Similarity=0.379 Sum_probs=40.1
Q ss_pred eEEEcCCC--CCccHHHHHHHHhhcC-----CeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 8 TIYVGNLP--SDIREYEVEDLFYKYG-----RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 8 ~l~V~nLp--~~~t~~~L~~~F~~~G-----~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
+||| |+- ..+++.+|..++...+ .|-.|.+. ..|+||+-.. +.|..++..|++..+.|+.|.|+.|
T Consensus 2 rl~i-n~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~-----~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 2 RLFI-NVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIF-----DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp EEEE-S-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE------SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred EEEE-EcccccCCCHHHHHHHHHhccCCCHHhEEEEEEe-----eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4555 442 3489999999998765 45567776 4599999875 5889999999999999999999865
No 180
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.03 E-value=0.051 Score=35.48 Aligned_cols=53 Identities=19% Similarity=0.369 Sum_probs=40.8
Q ss_pred CeEEEcCCCCCccHHHHHHHHhhc----CCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHh
Q 022981 7 RTIYVGNLPSDIREYEVEDLFYKY----GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65 (289)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~----G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l 65 (289)
..|+|.++ .+++.+||+.+|..| ++. .|.-+-| .-|=|.|.+.+.|.+||..|
T Consensus 6 eavhirGv-d~lsT~dI~~y~~~y~~~~~~~-~IEWIdD----tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGV-DELSTDDIKAYFSEYFDEEGPF-RIEWIDD----TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcC-CCCCHHHHHHHHHHhcccCCCc-eEEEecC----CcEEEEECCHHHHHHHHHcC
Confidence 46889998 458889999999998 433 4443333 36789999999999999864
No 181
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.99 E-value=0.019 Score=41.48 Aligned_cols=74 Identities=26% Similarity=0.310 Sum_probs=45.8
Q ss_pred cceeeecCCCCCCCHHHHHHHHHhcCCeeEEE-EeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcC
Q 022981 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAE-VSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLD 202 (289)
Q Consensus 124 ~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~ 202 (289)
..-|.|-+.|+. ....|.++|++||.|.... +.+...+.. .+ -.....+...|.|.++.+|.+|+. .|
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~-----~~----~~~~~~NWi~I~Y~~~~~A~rAL~-~N 74 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGIN-----PY----PIPSGGNWIHITYDNPLSAQRALQ-KN 74 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG-------------------E-CCTTEEEEEESSHHHHHHHHT-TT
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccc-----cc----cCCCCCCEEEEECCCHHHHHHHHH-hC
Confidence 446888888888 5567899999999997654 111100000 00 000124689999999999999998 88
Q ss_pred CcccCC
Q 022981 203 DTEFRN 208 (289)
Q Consensus 203 ~~~~~~ 208 (289)
|..+.+
T Consensus 75 G~i~~g 80 (100)
T PF05172_consen 75 GTIFSG 80 (100)
T ss_dssp TEEETT
T ss_pred CeEEcC
Confidence 888873
No 182
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.96 E-value=0.005 Score=55.57 Aligned_cols=76 Identities=13% Similarity=0.188 Sum_probs=63.5
Q ss_pred CCCCeEEEcCCCCC-ccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccC
Q 022981 4 RFSRTIYVGNLPSD-IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (289)
Q Consensus 4 ~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 82 (289)
...+.|-+.-.|+. -+-++|...|.+||.|.+|.+-.. .-.|.|+|.+..+|-.|.. .++..|+++.|+|.|.++
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~---~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS---SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc---hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 34556666667776 466889999999999999988543 4689999999999988888 899999999999999987
Q ss_pred C
Q 022981 83 G 83 (289)
Q Consensus 83 ~ 83 (289)
.
T Consensus 446 s 446 (526)
T KOG2135|consen 446 S 446 (526)
T ss_pred C
Confidence 5
No 183
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.81 E-value=0.011 Score=49.42 Aligned_cols=74 Identities=27% Similarity=0.326 Sum_probs=59.0
Q ss_pred CeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC--CCCCceEEEEEccHHHHHHHHHHhCCcee----CCceEEEEEc
Q 022981 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNF----DGCRLRVELA 80 (289)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~----~g~~l~v~~~ 80 (289)
..|+|.||..-++-|.|.+.|+.||+|...-++.| ++..+-++|+|+..-.|.+|+..+.-.-| .+++.-|...
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 67999999999999999999999999988666554 57788999999999999999987743333 3455555443
No 184
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.80 E-value=0.0081 Score=50.08 Aligned_cols=79 Identities=13% Similarity=0.064 Sum_probs=59.1
Q ss_pred eeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcc
Q 022981 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTE 205 (289)
Q Consensus 126 ~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~ 205 (289)
.||+.++|+.+...-|+++|..||.|-.|.+....... -..--.-....++.-.-|.|+|.+...|..+...||+..
T Consensus 76 VvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~---~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 76 VVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSK---RAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred EEEeccCCCccCHHHHHHHHHhccccceEEecchhhHH---HHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 89999999999999999999999999998887654410 000000001122333458899999999999999999999
Q ss_pred cC
Q 022981 206 FR 207 (289)
Q Consensus 206 ~~ 207 (289)
++
T Consensus 153 Ig 154 (278)
T KOG3152|consen 153 IG 154 (278)
T ss_pred cC
Confidence 98
No 185
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=95.77 E-value=0.014 Score=50.40 Aligned_cols=12 Identities=0% Similarity=0.125 Sum_probs=6.5
Q ss_pred CCCHHHHHHHHH
Q 022981 135 SASWQDLKDHMR 146 (289)
Q Consensus 135 ~~~~~~l~~~f~ 146 (289)
++++++|.+++-
T Consensus 212 d~~k~eid~ic~ 223 (367)
T KOG0835|consen 212 DTTKREIDEICY 223 (367)
T ss_pred CCcHHHHHHHHH
Confidence 455555555544
No 186
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.77 E-value=0.0042 Score=53.83 Aligned_cols=77 Identities=30% Similarity=0.534 Sum_probs=59.9
Q ss_pred CeEEEcCCCCCccHHHHH---HHHhhcCCeeEEEEccCC------CCCceEEEEEccHHHHHHHHHHhCCceeCCceEEE
Q 022981 7 RTIYVGNLPSDIREYEVE---DLFYKYGRILDIELKIPP------RPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (289)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~---~~F~~~G~i~~v~~~~~~------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 77 (289)
+-+||-+|++.+-.+.+. +.|.+||.|..|.+..+. ....-+||+|...++|..||...+|+.++|+.|++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 446788888886666554 378999999999885432 11234899999999999999999999999999887
Q ss_pred EEccCC
Q 022981 78 ELAHGG 83 (289)
Q Consensus 78 ~~~~~~ 83 (289)
.+...+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 776543
No 187
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.73 E-value=0.039 Score=46.98 Aligned_cols=64 Identities=16% Similarity=0.131 Sum_probs=50.2
Q ss_pred HHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeee
Q 022981 139 QDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 218 (289)
Q Consensus 139 ~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~ 218 (289)
.++.+.|++||.|..|.|.-.+.. +. .-.--.||+|+..++|.+|+-.|||..|+ |+.+..-
T Consensus 301 de~keEceKyg~V~~viifeip~~-p~-------------deavRiFveF~r~e~aiKA~VdlnGRyFG----Gr~v~A~ 362 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQ-PE-------------DEAVRIFVEFERVESAIKAVVDLNGRYFG----GRVVSAC 362 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCC-cc-------------chhheeeeeeccHHHHHHHHHhcCCceec----ceeeehe
Confidence 478999999999999998876542 10 01125899999999999999999999999 7776654
Q ss_pred cc
Q 022981 219 RY 220 (289)
Q Consensus 219 ~~ 220 (289)
..
T Consensus 363 Fy 364 (378)
T KOG1996|consen 363 FY 364 (378)
T ss_pred ec
Confidence 43
No 188
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.61 E-value=0.052 Score=43.94 Aligned_cols=62 Identities=27% Similarity=0.288 Sum_probs=46.2
Q ss_pred cHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhC--CceeCCceEEEEEccCC
Q 022981 19 REYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD--GYNFDGCRLRVELAHGG 83 (289)
Q Consensus 19 t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--g~~~~g~~l~v~~~~~~ 83 (289)
..+.|+++|..|+.+..+..... -+-..|.|.+.++|..|...|+ +..+.|..|+|.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s---FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS---FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT---TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC---CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 45789999999998888776533 4578999999999999999999 99999999999998544
No 189
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.37 E-value=0.052 Score=48.96 Aligned_cols=68 Identities=16% Similarity=0.297 Sum_probs=59.1
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhc-CCeeEEEEccCCCC-CceEEEEEccHHHHHHHHHHhCCceeCC
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKY-GRILDIELKIPPRP-PCYCFVEFENARDAEDAIRGRDGYNFDG 72 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~-G~i~~v~~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~g 72 (289)
+++.|+|--+|..+|.-||..|...+ -.|.+|+++.|+.+ +=.+.|.|.+.++|...+..+||..|..
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 37889999999999999999998865 47899999887643 4578999999999999999999999854
No 190
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.19 E-value=0.083 Score=48.92 Aligned_cols=56 Identities=16% Similarity=0.266 Sum_probs=48.2
Q ss_pred CcceeeecCCCCCCCHHHHHHHHHh--cCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 123 SEYRVIVRGLPSSASWQDLKDHMRK--AGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 123 ~~~~l~v~nlp~~~~~~~l~~~f~~--~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
..|.|++..||+.+-.|+|+.+|+. |-++++|++..+.. =||+|++..||+.|.+.
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n----------------------WyITfesd~DAQqAyky 231 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN----------------------WYITFESDTDAQQAYKY 231 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc----------------------eEEEeecchhHHHHHHH
Confidence 4468899999999999999999986 77889999887655 58999999999999754
No 191
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.09 E-value=0.045 Score=50.59 Aligned_cols=70 Identities=17% Similarity=0.256 Sum_probs=55.9
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhh--cCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCC--ceeCCceEEE
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYK--YGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG--YNFDGCRLRV 77 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~--~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~v 77 (289)
...+.|.|.-||..+-.|+|+.||.. |.++.+|.+.... -=||+|++..||+.|++.|.. ++|.|++|..
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~----nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND----NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC----ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 34567889999999999999999975 8899999885431 349999999999999988733 5566766553
No 192
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=94.98 E-value=0.16 Score=33.69 Aligned_cols=55 Identities=20% Similarity=0.366 Sum_probs=44.7
Q ss_pred CccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEE
Q 022981 17 DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (289)
Q Consensus 17 ~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 77 (289)
.++-++|+..+..|+ -.+|..-. .|| ||.|.+..+|++++...+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I~~d~----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRIRDDR----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cceEEecC----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 478899999999996 33554432 466 89999999999999999999998877765
No 193
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.89 E-value=0.22 Score=32.57 Aligned_cols=54 Identities=22% Similarity=0.183 Sum_probs=42.0
Q ss_pred ceeeecCCCCCCCHHHHHHHHHhc---CCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhc
Q 022981 125 YRVIVRGLPSSASWQDLKDHMRKA---GDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKL 201 (289)
Q Consensus 125 ~~l~v~nlp~~~~~~~l~~~f~~~---g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 201 (289)
..|+|.++. +++-++|+.+|..| .....++...+.. +-|.|.+.+.|.+|+..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDtS----------------------cNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDTS----------------------CNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCCc----------------------EEEEECCHHHHHHHHHcC
Confidence 378899985 47778999999998 1344566666655 779999999999999764
No 194
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.83 E-value=0.044 Score=49.66 Aligned_cols=74 Identities=15% Similarity=0.140 Sum_probs=57.1
Q ss_pred CcceeeecCCCCCC-CHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhc
Q 022981 123 SEYRVIVRGLPSSA-SWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKL 201 (289)
Q Consensus 123 ~~~~l~v~nlp~~~-~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 201 (289)
..+.+.+.-.|..+ +..+|..+|.+||.|..+.|..... -|.|+|.+..+|-+|.. .
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~---------------------~a~vTF~t~aeag~a~~-s 428 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL---------------------HAVVTFKTRAEAGEAYA-S 428 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchh---------------------hheeeeeccccccchhc-c
Confidence 34455566566555 5688999999999999988876533 58999999999977776 8
Q ss_pred CCcccCCccccceeeeeccCC
Q 022981 202 DDTEFRNPWARGRITVKRYDR 222 (289)
Q Consensus 202 ~~~~~~~~~~g~~i~v~~~~~ 222 (289)
++..|+ ++.|+|.....
T Consensus 429 ~~avln----nr~iKl~whnp 445 (526)
T KOG2135|consen 429 HGAVLN----NRFIKLFWHNP 445 (526)
T ss_pred ccceec----CceeEEEEecC
Confidence 888888 78888876654
No 195
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.80 E-value=0.13 Score=44.12 Aligned_cols=70 Identities=17% Similarity=0.271 Sum_probs=52.6
Q ss_pred EEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCce-EEEEEccCC
Q 022981 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR-LRVELAHGG 83 (289)
Q Consensus 9 l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~v~~~~~~ 83 (289)
|-|-++|+.-. .-|..+|++||.|++.... ..-.+-+|.|.+.-+|++||. .||+.|+|.. |=|..+.++
T Consensus 200 VTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~---~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 200 VTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP---SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred EEEeccCccch-hHHHHHHHhhCeeeeeecC---CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCCH
Confidence 45557776643 5678899999999887443 335699999999999999999 8999998754 445554443
No 196
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.28 E-value=0.047 Score=50.88 Aligned_cols=77 Identities=12% Similarity=0.104 Sum_probs=61.7
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHH-hcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMR-KAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~-~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
...+.|+|.||--..|.-.|+.++. .+|.|...||.+-+. .|||.|.+.++|.+.+.+
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKS---------------------hCyV~yss~eEA~atr~A 500 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKS---------------------HCYVSYSSVEEAAATREA 500 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhc---------------------ceeEecccHHHHHHHHHH
Confidence 4466899999999999999999999 578888776666544 699999999999999999
Q ss_pred cCCcccCCccccceeeeecc
Q 022981 201 LDDTEFRNPWARGRITVKRY 220 (289)
Q Consensus 201 ~~~~~~~~~~~g~~i~v~~~ 220 (289)
|||-...- .....|.++++
T Consensus 501 lhnV~WP~-sNPK~L~adf~ 519 (718)
T KOG2416|consen 501 LHNVQWPP-SNPKHLIADFV 519 (718)
T ss_pred HhccccCC-CCCceeEeeec
Confidence 99988651 11556666654
No 197
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.07 E-value=0.033 Score=52.50 Aligned_cols=72 Identities=19% Similarity=0.189 Sum_probs=64.3
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
.+..++||+||...+..+-++.+...||-|..++... |+|.+|..+.-+..|+..|+-..++|..|.+....
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~ 109 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDE 109 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh------hcccchhhHHHHHHHHHHhcccCCCcchhhccchh
Confidence 4678999999999999999999999999998876652 99999999999999999999999999988887753
No 198
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=93.91 E-value=0.061 Score=46.90 Aligned_cols=72 Identities=18% Similarity=0.161 Sum_probs=55.4
Q ss_pred CcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcC
Q 022981 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLD 202 (289)
Q Consensus 123 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~ 202 (289)
...++||+||-+-+|++||-+.....|.-...+ +-|-.+..+|+++|||+|...+.....+.++.|-
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~d-------------mKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP 145 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFAD-------------MKFFENRTNGQSKGYALLVLNSDAAVKQTMEILP 145 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhh-------------hhhhhcccCCcccceEEEEecchHHHHHHHHhcc
Confidence 345899999999999999999888766432111 1123345588999999999999988888888887
Q ss_pred CcccC
Q 022981 203 DTEFR 207 (289)
Q Consensus 203 ~~~~~ 207 (289)
.+.+.
T Consensus 146 ~k~iH 150 (498)
T KOG4849|consen 146 TKTIH 150 (498)
T ss_pred cceec
Confidence 77776
No 199
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=93.50 E-value=0.22 Score=38.46 Aligned_cols=54 Identities=15% Similarity=0.254 Sum_probs=44.2
Q ss_pred HHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeee
Q 022981 139 QDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 218 (289)
Q Consensus 139 ~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~ 218 (289)
.+|.+.|..||.|.-+++..+ .-.|+|.+-..|.+|+. ++|.++. |..|+|.
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~-----------------------~mwVTF~dg~sALaals-~dg~~v~----g~~l~i~ 102 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD-----------------------TMWVTFRDGQSALAALS-LDGIQVN----GRTLKIR 102 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT-----------------------CEEEEESSCHHHHHHHH-GCCSEET----TEEEEEE
T ss_pred HHHHHHHHhCCceEEEEEeCC-----------------------eEEEEECccHHHHHHHc-cCCcEEC----CEEEEEE
Confidence 368888999999988877663 36799999999999998 9999998 8888887
Q ss_pred cc
Q 022981 219 RY 220 (289)
Q Consensus 219 ~~ 220 (289)
.-
T Consensus 103 LK 104 (146)
T PF08952_consen 103 LK 104 (146)
T ss_dssp E-
T ss_pred eC
Confidence 54
No 200
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=93.49 E-value=0.015 Score=53.15 Aligned_cols=10 Identities=50% Similarity=0.331 Sum_probs=4.3
Q ss_pred CCCCCCCCCc
Q 022981 275 RSRSVSPDKV 284 (289)
Q Consensus 275 rsrsrs~~~~ 284 (289)
++|||+++..
T Consensus 461 rsRsRs~s~r 470 (653)
T KOG2548|consen 461 RSRSRSESLR 470 (653)
T ss_pred hhhhccchhh
Confidence 3444444433
No 201
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=93.13 E-value=0.014 Score=52.14 Aligned_cols=79 Identities=19% Similarity=0.291 Sum_probs=66.9
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCC
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (289)
-++.|.|.|+|+....+.|..|..+||.++.|....+..-.-..-|+|...+.+..||..|+|..+....++|.|-...
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPde 157 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPDE 157 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCchh
Confidence 3566899999999999999999999999999987554433445557899999999999999999999999999887644
No 202
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.08 E-value=0.069 Score=51.77 Aligned_cols=73 Identities=18% Similarity=0.174 Sum_probs=61.4
Q ss_pred EEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCcee--CCceEEEEEccCCC
Q 022981 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF--DGCRLRVELAHGGS 84 (289)
Q Consensus 9 l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~~~~~~~ 84 (289)
.++.|.+-..+-.-|..+|++||.|.+++...+ -..|.|+|...+.|..|+.+|+|+.+ -|-+.+|.+++..+
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~---~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRD---LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccc---ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 344455556788889999999999999988654 56999999999999999999999876 68889999998664
No 203
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.08 E-value=1.1 Score=33.12 Aligned_cols=65 Identities=11% Similarity=0.055 Sum_probs=49.2
Q ss_pred eeeecCCCCCCCHHHHHHHHHhc-CCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCc
Q 022981 126 RVIVRGLPSSASWQDLKDHMRKA-GDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDT 204 (289)
Q Consensus 126 ~l~v~nlp~~~~~~~l~~~f~~~-g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 204 (289)
.+.+...|..++.++|..+.+.+ ..|..+.|.++.. -++-.+.+.|.+.++|.+-...+||+
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~-----------------pnrymVLikF~~~~~Ad~Fy~~fNGk 77 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT-----------------PNRYMVLIKFRDQESADEFYEEFNGK 77 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC-----------------CceEEEEEEECCHHHHHHHHHHhCCC
Confidence 44555556666666776666554 4667788888665 34668999999999999999999999
Q ss_pred ccC
Q 022981 205 EFR 207 (289)
Q Consensus 205 ~~~ 207 (289)
.|.
T Consensus 78 ~Fn 80 (110)
T PF07576_consen 78 PFN 80 (110)
T ss_pred ccC
Confidence 997
No 204
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=92.94 E-value=0.16 Score=44.23 Aligned_cols=16 Identities=25% Similarity=0.252 Sum_probs=7.5
Q ss_pred eEEEEEccHHHHHHHH
Q 022981 47 YCFVEFENARDAEDAI 62 (289)
Q Consensus 47 ~afV~f~~~~~A~~A~ 62 (289)
-.||-|.-+.-|..++
T Consensus 175 ~v~vry~pe~iACaci 190 (367)
T KOG0835|consen 175 DVFVRYSPESIACACI 190 (367)
T ss_pred ceeeecCHHHHHHHHH
Confidence 4556665444443333
No 205
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=91.33 E-value=0.27 Score=39.64 Aligned_cols=86 Identities=14% Similarity=0.202 Sum_probs=51.3
Q ss_pred CcceeeecCCCCCCCHHHHHHHHHh-cCCe---eEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHH
Q 022981 123 SEYRVIVRGLPSSASWQDLKDHMRK-AGDV---CFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAI 198 (289)
Q Consensus 123 ~~~~l~v~nlp~~~~~~~l~~~f~~-~g~v---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~ 198 (289)
....|.|++||+.++++++.+.+.. ++.. .++.-....... ......-|||.|.+.+++....
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~-------------~~~~~SRaYi~F~~~~~~~~F~ 72 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSF-------------KPPTYSRAYINFKNPEDLLEFR 72 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSS-------------TTS--EEEEEEESSCHHHHHHH
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccC-------------CCCcceEEEEEeCCHHHHHHHH
Confidence 3458999999999999999886665 5544 333311211110 0012357999999999999999
Q ss_pred HhcCCcccCCcc-ccceeeeeccC
Q 022981 199 RKLDDTEFRNPW-ARGRITVKRYD 221 (289)
Q Consensus 199 ~~~~~~~~~~~~-~g~~i~v~~~~ 221 (289)
..++|..|.+.- ......|+.+-
T Consensus 73 ~~~~g~~F~D~kg~~~~~~VE~Ap 96 (176)
T PF03467_consen 73 DRFDGHVFVDSKGNEYPAVVEFAP 96 (176)
T ss_dssp HHCTTEEEE-TTS-EEEEEEEE-S
T ss_pred HhcCCcEEECCCCCCcceeEEEcc
Confidence 999998886332 23455566554
No 206
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=90.66 E-value=1.2 Score=29.50 Aligned_cols=50 Identities=20% Similarity=0.353 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccC
Q 022981 134 SSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFR 207 (289)
Q Consensus 134 ~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~ 207 (289)
..++.++++..+.+|+ ..+|..+..| -||.|.+..+|+++....++..+.
T Consensus 10 ~~~~v~d~K~~Lr~y~---~~~I~~d~tG---------------------fYIvF~~~~Ea~rC~~~~~~~~~f 59 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYR---WDRIRDDRTG---------------------FYIVFNDSKEAERCFRAEDGTLFF 59 (66)
T ss_pred CCccHHHHHHHHhcCC---cceEEecCCE---------------------EEEEECChHHHHHHHHhcCCCEEE
Confidence 3567789999999984 4466777775 689999999999999999998876
No 207
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=90.65 E-value=0.53 Score=36.04 Aligned_cols=59 Identities=12% Similarity=0.173 Sum_probs=44.7
Q ss_pred ceeeecCC----CCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 125 YRVIVRGL----PSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 125 ~~l~v~nl----p~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
.+|.|.=| ...-+...|...++.||+|.++.+.-.. .|.|.|++...|-.|+.+
T Consensus 87 sTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq----------------------savVvF~d~~SAC~Av~A 144 (166)
T PF15023_consen 87 STIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ----------------------SAVVVFKDITSACKAVSA 144 (166)
T ss_pred eeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc----------------------eEEEEehhhHHHHHHHHh
Confidence 36666544 4444455677788899999988766533 499999999999999999
Q ss_pred cCCcc
Q 022981 201 LDDTE 205 (289)
Q Consensus 201 ~~~~~ 205 (289)
++...
T Consensus 145 f~s~~ 149 (166)
T PF15023_consen 145 FQSRA 149 (166)
T ss_pred hcCCC
Confidence 98754
No 208
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.28 E-value=1.4 Score=41.44 Aligned_cols=78 Identities=22% Similarity=0.389 Sum_probs=61.2
Q ss_pred CCCCCeEEEcCCCCC-ccHHHHHHHHhhc----CCeeEEEEccC-------------CC-------------C-------
Q 022981 3 GRFSRTIYVGNLPSD-IREYEVEDLFYKY----GRILDIELKIP-------------PR-------------P------- 44 (289)
Q Consensus 3 ~~~~~~l~V~nLp~~-~t~~~L~~~F~~~----G~i~~v~~~~~-------------~~-------------~------- 44 (289)
+.++++|-|.||.++ +...||.-+|..| |.|..|.|..+ |. .
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 357889999999998 8999999999876 58999988431 11 0
Q ss_pred -----------------CceEEEEEccHHHHHHHHHHhCCceeCC--ceEEEEEc
Q 022981 45 -----------------PCYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVELA 80 (289)
Q Consensus 45 -----------------~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~~ 80 (289)
-=||.|+|.+.+.|...+..++|..|.. ..|-+.|.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 0289999999999999999999999965 44444443
No 209
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=90.18 E-value=0.72 Score=31.98 Aligned_cols=55 Identities=16% Similarity=0.222 Sum_probs=40.1
Q ss_pred eeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCC
Q 022981 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDD 203 (289)
Q Consensus 126 ~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~ 203 (289)
.||--..|..+...||.++|..||.|.-.+|.. ..|||.+...+.|..++..+..
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I~VsWi~d-----------------------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQIYVSWIND-----------------------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCEEEEEECT-----------------------TEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcEEEEEEcC-----------------------CcEEEEeecHHHHHHHHHHhcc
Confidence 344444999999999999999999986544432 3699999999999999887764
No 210
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.98 E-value=1.6 Score=39.81 Aligned_cols=67 Identities=10% Similarity=0.182 Sum_probs=59.1
Q ss_pred cceeeecCCCCCCCHHHHHHHHHhc-CCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcC
Q 022981 124 EYRVIVRGLPSSASWQDLKDHMRKA-GDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLD 202 (289)
Q Consensus 124 ~~~l~v~nlp~~~~~~~l~~~f~~~-g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~ 202 (289)
.+.|.|-.+|..++..||..++..+ -.|..+.|+++... +.-.+.|.|.+.++|....+.+|
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-----------------nrymvLIkFr~q~da~~Fy~efN 136 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-----------------NRYMVLIKFRDQADADTFYEEFN 136 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-----------------ceEEEEEEeccchhHHHHHHHcC
Confidence 6789999999999999999999975 56888999997763 34579999999999999999999
Q ss_pred CcccC
Q 022981 203 DTEFR 207 (289)
Q Consensus 203 ~~~~~ 207 (289)
|..|.
T Consensus 137 Gk~Fn 141 (493)
T KOG0804|consen 137 GKQFN 141 (493)
T ss_pred CCcCC
Confidence 99997
No 211
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=88.25 E-value=0.55 Score=44.44 Aligned_cols=12 Identities=8% Similarity=0.111 Sum_probs=5.0
Q ss_pred eeeecCCCCCCC
Q 022981 126 RVIVRGLPSSAS 137 (289)
Q Consensus 126 ~l~v~nlp~~~~ 137 (289)
+.-|..+++..+
T Consensus 604 ~~~Is~~~p~~t 615 (878)
T KOG1847|consen 604 SRSISVEPPDST 615 (878)
T ss_pred cccccccCCCCC
Confidence 334444444433
No 212
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=88.11 E-value=0.44 Score=46.49 Aligned_cols=74 Identities=16% Similarity=0.125 Sum_probs=60.2
Q ss_pred eeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcc
Q 022981 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTE 205 (289)
Q Consensus 126 ~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~ 205 (289)
+..+.|.+-..+...|..+|.+||.|.+++..++-. .|.|+|...+.|..|++.++|++
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N---------------------~alvs~~s~~sai~a~dAl~gke 358 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN---------------------MALVSFSSVESAILALDALQGKE 358 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc---------------------chhhhhHHHHHHHHhhhhhcCCc
Confidence 344555566677778999999999999999888655 69999999999999999999998
Q ss_pred cCCccccceeeeeccCC
Q 022981 206 FRNPWARGRITVKRYDR 222 (289)
Q Consensus 206 ~~~~~~g~~i~v~~~~~ 222 (289)
.- ..|.+.+|..++-
T Consensus 359 vs--~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 359 VS--VTGAPSRVSFAKT 373 (1007)
T ss_pred cc--ccCCceeEEeccc
Confidence 76 2367788887763
No 213
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=87.84 E-value=1.4 Score=31.01 Aligned_cols=73 Identities=21% Similarity=0.349 Sum_probs=45.9
Q ss_pred EEEEEccHHHHHHHHHHh-CCceeCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcce
Q 022981 48 CFVEFENARDAEDAIRGR-DGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYR 126 (289)
Q Consensus 48 afV~f~~~~~A~~A~~~l-~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (289)
|.|+|.++.-|+..++.- +...+.+..+.|....-....... -.--......+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k--------------------------~qv~~~vs~rt 54 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQK--------------------------FQVFSGVSKRT 54 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceE--------------------------EEEEEcccCCE
Confidence 689999999999999832 223446666666654322100000 00011234458
Q ss_pred eeecCCCCCCCHHHHHHHHH
Q 022981 127 VIVRGLPSSASWQDLKDHMR 146 (289)
Q Consensus 127 l~v~nlp~~~~~~~l~~~f~ 146 (289)
|.|.|||..+.+++|.+..+
T Consensus 55 Vlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 55 VLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred EEEeCCCCCCChhhheeeEE
Confidence 99999999999999887753
No 214
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=84.64 E-value=3.8 Score=33.23 Aligned_cols=60 Identities=17% Similarity=0.114 Sum_probs=43.2
Q ss_pred CHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcC--CcccCCccccce
Q 022981 137 SWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLD--DTEFRNPWARGR 214 (289)
Q Consensus 137 ~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~--~~~~~~~~~g~~ 214 (289)
..+.|.++|..++.+....+.+.- +-..|.|.+.+.|..|...++ +..+. |..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF---------------------rRi~v~f~~~~~A~~~r~~l~~~~~~~~----g~~ 62 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF---------------------RRIRVVFESPESAQRARQLLHWDGTSFN----GKR 62 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT---------------------TEEEEE-SSTTHHHHHHHTST--TSEET----TEE
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC---------------------CEEEEEeCCHHHHHHHHHHhcccccccC----CCc
Confidence 357899999999988776665532 368899999999999999999 88888 777
Q ss_pred eeeeccC
Q 022981 215 ITVKRYD 221 (289)
Q Consensus 215 i~v~~~~ 221 (289)
+++..+.
T Consensus 63 l~~yf~~ 69 (184)
T PF04847_consen 63 LRVYFGQ 69 (184)
T ss_dssp -EEE---
T ss_pred eEEEEcc
Confidence 8887764
No 215
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=84.50 E-value=2.3 Score=40.58 Aligned_cols=66 Identities=17% Similarity=0.080 Sum_probs=55.6
Q ss_pred CCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHH
Q 022981 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYA 197 (289)
Q Consensus 118 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 197 (289)
..+..+..++||+|+-..+..+-++.+...||.|.++.... |||..|..+..+..|
T Consensus 34 ~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~------------------------fgf~~f~~~~~~~ra 89 (668)
T KOG2253|consen 34 FQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK------------------------FGFCEFLKHIGDLRA 89 (668)
T ss_pred ccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh------------------------hcccchhhHHHHHHH
Confidence 34456677999999999999999999999999997654433 899999999999999
Q ss_pred HHhcCCcccC
Q 022981 198 IRKLDDTEFR 207 (289)
Q Consensus 198 ~~~~~~~~~~ 207 (289)
+..++...++
T Consensus 90 ~r~~t~~~~~ 99 (668)
T KOG2253|consen 90 SRLLTELNID 99 (668)
T ss_pred HHHhcccCCC
Confidence 9888777775
No 216
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=83.76 E-value=6.8 Score=37.26 Aligned_cols=41 Identities=22% Similarity=0.316 Sum_probs=28.3
Q ss_pred CCCcceeeecCCCCC-CCHHHHHHHHHhcCCeeEEEEeeCCC
Q 022981 121 RHSEYRVIVRGLPSS-ASWQDLKDHMRKAGDVCFAEVSRDSE 161 (289)
Q Consensus 121 ~~~~~~l~v~nlp~~-~~~~~l~~~f~~~g~v~~~~i~~~~~ 161 (289)
......++|.+++.+ ++..-..+.+.++|.+..+.|.+...
T Consensus 58 QenDrvvMVNGvsMenv~haFAvQqLrksgK~A~ItvkRprk 99 (1027)
T KOG3580|consen 58 QENDRVVMVNGVSMENVLHAFAVQQLRKSGKVAAITVKRPRK 99 (1027)
T ss_pred ccCCeEEEEcCcchhhhHHHHHHHHHHhhccceeEEecccce
Confidence 345567888888753 34444566778899998888877655
No 217
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=83.14 E-value=2.2 Score=36.82 Aligned_cols=68 Identities=21% Similarity=0.269 Sum_probs=48.6
Q ss_pred eeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcc
Q 022981 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTE 205 (289)
Q Consensus 126 ~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~ 205 (289)
=|.|-++|+.-. .-|-.+|.+||.|...... .. .++-+|.|.+..+|.+||. .+|+.
T Consensus 199 WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~--~n-------------------gNwMhirYssr~~A~KALs-kng~i 255 (350)
T KOG4285|consen 199 WVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP--SN-------------------GNWMHIRYSSRTHAQKALS-KNGTI 255 (350)
T ss_pred eEEEeccCccch-hHHHHHHHhhCeeeeeecC--CC-------------------CceEEEEecchhHHHHhhh-hcCee
Confidence 355556655433 4578899999999765544 33 3589999999999999998 78888
Q ss_pred cCCccccceeeeec
Q 022981 206 FRNPWARGRITVKR 219 (289)
Q Consensus 206 ~~~~~~g~~i~v~~ 219 (289)
|++ ...|-|..
T Consensus 256 i~g---~vmiGVkp 266 (350)
T KOG4285|consen 256 IDG---DVMIGVKP 266 (350)
T ss_pred ecc---ceEEeeee
Confidence 873 34445554
No 218
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=80.95 E-value=3.4 Score=35.61 Aligned_cols=76 Identities=16% Similarity=0.157 Sum_probs=57.7
Q ss_pred CCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCC----------CCCceEEEEEccHHHHHHHHH----HhCC--ce
Q 022981 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP----------RPPCYCFVEFENARDAEDAIR----GRDG--YN 69 (289)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~----------~~~g~afV~f~~~~~A~~A~~----~l~g--~~ 69 (289)
++.|.+.||..+++--.+...|-+||+|+.|+++.+. ....-+.+.|-+.+.|..... .|.. ..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 5678889999999999999999999999999996532 345688999999988876542 2321 44
Q ss_pred eCCceEEEEEcc
Q 022981 70 FDGCRLRVELAH 81 (289)
Q Consensus 70 ~~g~~l~v~~~~ 81 (289)
+....|.+.+..
T Consensus 95 L~S~~L~lsFV~ 106 (309)
T PF10567_consen 95 LKSESLTLSFVS 106 (309)
T ss_pred cCCcceeEEEEE
Confidence 566777777665
No 219
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=80.59 E-value=8.2 Score=26.92 Aligned_cols=57 Identities=11% Similarity=0.166 Sum_probs=43.0
Q ss_pred EEEcCCCCCccHHHHHHHHhh-cC-CeeEEEEccCCCCCceEEEEEccHHHHHHHHHHh
Q 022981 9 IYVGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65 (289)
Q Consensus 9 l~V~nLp~~~t~~~L~~~F~~-~G-~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l 65 (289)
-|+--++..++..+|++.++. || +|..|.........--|||.+...++|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 344467889999999999987 66 6777777544444558999999999988876544
No 220
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=80.15 E-value=1.2 Score=39.02 Aligned_cols=79 Identities=15% Similarity=0.116 Sum_probs=55.6
Q ss_pred cceeeecCCCCCCCHHHHH---HHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 124 EYRVIVRGLPSSASWQDLK---DHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 124 ~~~l~v~nlp~~~~~~~l~---~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
..-++|-+|+..+..+.+. +.|.+||.|..+.+..+..-. ... ....-++|+|+..++|..||..
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~----------s~~--~~~~s~yITy~~~eda~rci~~ 144 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSS----------SSS--GGTCSVYITYEEEEDADRCIDD 144 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccc----------cCC--CCCCcccccccchHhhhhHHHH
Confidence 3467888898888776654 478888999998888866200 000 1122399999999999999999
Q ss_pred cCCcccCCccccceeeee
Q 022981 201 LDDTEFRNPWARGRITVK 218 (289)
Q Consensus 201 ~~~~~~~~~~~g~~i~v~ 218 (289)
-+|..+. ++.++..
T Consensus 145 v~g~~~d----g~~lka~ 158 (327)
T KOG2068|consen 145 VDGFVDD----GRALKAS 158 (327)
T ss_pred hhhHHhh----hhhhHHh
Confidence 8888776 5554433
No 221
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.84 E-value=3.1 Score=37.32 Aligned_cols=57 Identities=12% Similarity=0.290 Sum_probs=46.5
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHH
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~ 63 (289)
+-.+.|-|.++|.....+||...|+.|+. ..++|+|-. .-.||-.|.....|..||.
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~-kgfdIkWvD--dthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQN-KGFDIKWVD--DTHALAVFSSVNRAAEALT 445 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhc-CCceeEEee--cceeEEeecchHHHHHHhh
Confidence 44678999999999999999999999973 355565522 3489999999999999998
No 222
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=78.35 E-value=11 Score=25.73 Aligned_cols=57 Identities=12% Similarity=0.160 Sum_probs=42.1
Q ss_pred EEEcCCCCCccHHHHHHHHhh-cC-CeeEEEEccCCCCCceEEEEEccHHHHHHHHHHh
Q 022981 9 IYVGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65 (289)
Q Consensus 9 l~V~nLp~~~t~~~L~~~F~~-~G-~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l 65 (289)
-|+-.++.+++..+|++.++. || +|..|.........--|||.+...+.|...-..+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 445568899999999999987 66 6667766444333458999999888887765544
No 223
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=77.53 E-value=5.6 Score=34.16 Aligned_cols=47 Identities=23% Similarity=0.320 Sum_probs=35.9
Q ss_pred CeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccH
Q 022981 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENA 55 (289)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~ 55 (289)
+-|+|+|||.++...||+..+.+-|-+ -+.|.+.++ .|-||+.|.+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswkg~-~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWKGH-FGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCC-ceeEeeecC-CcceeEecCCc
Confidence 459999999999999999999887633 334444443 67999999763
No 224
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=77.33 E-value=3 Score=33.32 Aligned_cols=75 Identities=20% Similarity=0.245 Sum_probs=53.9
Q ss_pred CCeEEEcCCCCCcc-----HHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCc-eEEEEE
Q 022981 6 SRTIYVGNLPSDIR-----EYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC-RLRVEL 79 (289)
Q Consensus 6 ~~~l~V~nLp~~~t-----~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~l~v~~ 79 (289)
..+|.+.+|+..+- ......+|.+|-+..-+.+.. +.++.-|-|.+++.|..|...+++..|.|. .++.-+
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr---sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yf 86 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR---SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYF 86 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH---hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEE
Confidence 34577888877632 223345666666555444442 356778899999999999999999999988 888888
Q ss_pred ccCC
Q 022981 80 AHGG 83 (289)
Q Consensus 80 ~~~~ 83 (289)
+...
T Consensus 87 aQ~~ 90 (193)
T KOG4019|consen 87 AQPG 90 (193)
T ss_pred ccCC
Confidence 7754
No 225
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=77.24 E-value=1.3 Score=38.66 Aligned_cols=6 Identities=0% Similarity=0.529 Sum_probs=2.2
Q ss_pred HHHHHH
Q 022981 141 LKDHMR 146 (289)
Q Consensus 141 l~~~f~ 146 (289)
|.+.|+
T Consensus 229 Id~~ie 234 (453)
T KOG2888|consen 229 IDEKIE 234 (453)
T ss_pred HHHHHH
Confidence 333333
No 226
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=77.21 E-value=3.3 Score=32.08 Aligned_cols=120 Identities=18% Similarity=0.137 Sum_probs=76.5
Q ss_pred EEEcCCC--CCccHHHHHHHHhh-cCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCCCC
Q 022981 9 IYVGNLP--SDIREYEVEDLFYK-YGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSG 85 (289)
Q Consensus 9 l~V~nLp--~~~t~~~L~~~F~~-~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 85 (289)
..|+.+. ...+...|.+.+.+ ++....+.+..-+ .++..++|.+++++.+++. .....+.+..|.++.-.+...
T Consensus 18 ~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l~--~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~ 94 (153)
T PF14111_consen 18 CLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDLG--DNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFN 94 (153)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEeC--CCeEEEEEEeccceeEEEe-cccccccccchhhhhhccccc
Confidence 4455552 34667777777765 3444455553222 5799999999999999988 555667777777765553210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCC-CCHHHHHHHHHhcCCeeEEEEeeCC
Q 022981 86 RGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSS-ASWQDLKDHMRKAGDVCFAEVSRDS 160 (289)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~-~~~~~l~~~f~~~g~v~~~~i~~~~ 160 (289)
.. .........=|.|.|||.. .+++-+..+.+.+|.+..++.....
T Consensus 95 ~~-----------------------------~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~~ 141 (153)
T PF14111_consen 95 PS-----------------------------EVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTLK 141 (153)
T ss_pred cc-----------------------------ccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCCC
Confidence 00 0000112224678899987 4667788888899999887766543
No 227
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=72.93 E-value=20 Score=35.03 Aligned_cols=69 Identities=9% Similarity=0.081 Sum_probs=52.0
Q ss_pred eEEEcCC--CCCccHHHHHHHHhhcCCeeE-----EEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 8 TIYVGNL--PSDIREYEVEDLFYKYGRILD-----IELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 8 ~l~V~nL--p~~~t~~~L~~~F~~~G~i~~-----v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
++|| |+ -..+++.+|..++..-+.|.. |.|. ..|.||+-.. +.|...+..|++..+.|+.|.|+.+
T Consensus 488 ~~~~-~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~-----~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (629)
T PRK11634 488 LYRI-EVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLF-----ASHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLL 560 (629)
T ss_pred EEEE-ecccccCCCHHHHHHHHHhhcCCChhhCCcEEEe-----CCceEEEcCh-hhHHHHHHHhccccccCCceEEEEC
Confidence 3555 55 334899999999987665544 4444 4599999874 5688899999999999999999988
Q ss_pred cCC
Q 022981 81 HGG 83 (289)
Q Consensus 81 ~~~ 83 (289)
...
T Consensus 561 ~~~ 563 (629)
T PRK11634 561 GDA 563 (629)
T ss_pred CCC
Confidence 533
No 228
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=72.80 E-value=3.8 Score=30.52 Aligned_cols=56 Identities=18% Similarity=0.264 Sum_probs=28.5
Q ss_pred eEEEcCCCCC---------ccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccH-HHHHHHHH
Q 022981 8 TIYVGNLPSD---------IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENA-RDAEDAIR 63 (289)
Q Consensus 8 ~l~V~nLp~~---------~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~-~~A~~A~~ 63 (289)
++.|-|++.. ++.++|.+.|..|.+++-.-+.-.....|++.|+|..- .--..|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHH
Confidence 3456677543 46788999999999885443333345578999999753 33344444
No 229
>PF14893 PNMA: PNMA
Probab=72.49 E-value=4.8 Score=35.78 Aligned_cols=78 Identities=19% Similarity=0.149 Sum_probs=45.9
Q ss_pred CCCCCCCeEEEcCCCCCccHHHHHHHHhh-cCCeeEEEEc----cCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceE
Q 022981 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYK-YGRILDIELK----IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRL 75 (289)
Q Consensus 1 m~~~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~i~~v~~~----~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 75 (289)
|.-++.+.|.|.+||.++++++|++.+.. +-+.-...+. .-.....-|+|+|...-+-...=..+. -.|-..
T Consensus 13 m~~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~n~~~iP~~i~---g~gg~W 89 (331)
T PF14893_consen 13 MGVDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDVNYSLIPREIP---GKGGPW 89 (331)
T ss_pred cCcChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccccchhhCchhcC---CCCCce
Confidence 55678899999999999999999998764 2222233331 111224588899874332111111121 135666
Q ss_pred EEEEcc
Q 022981 76 RVELAH 81 (289)
Q Consensus 76 ~v~~~~ 81 (289)
+|.+-.
T Consensus 90 ~Vv~~p 95 (331)
T PF14893_consen 90 RVVFKP 95 (331)
T ss_pred EEEecC
Confidence 766644
No 230
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=72.39 E-value=14 Score=24.82 Aligned_cols=59 Identities=10% Similarity=0.229 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHHhcCC-----eeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCC
Q 022981 134 SSASWQDLKDHMRKAGD-----VCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRN 208 (289)
Q Consensus 134 ~~~~~~~l~~~f~~~g~-----v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~ 208 (289)
..++..+|..++...+. |-.++|.. .|.||+-.. +.|..++..|++..+.
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~-----------------------~~S~vev~~-~~a~~v~~~l~~~~~~- 65 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD-----------------------NFSFVEVPE-EVAEKVLEALNGKKIK- 65 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S-----------------------S-EEEEE-T-T-HHHHHHHHTT--SS-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee-----------------------eEEEEEECH-HHHHHHHHHhcCCCCC-
Confidence 45677788888877643 34444444 478887655 4788899999999998
Q ss_pred ccccceeeeecc
Q 022981 209 PWARGRITVKRY 220 (289)
Q Consensus 209 ~~~g~~i~v~~~ 220 (289)
|+.+.|+.|
T Consensus 66 ---gk~v~ve~A 74 (74)
T PF03880_consen 66 ---GKKVRVERA 74 (74)
T ss_dssp ---S----EEE-
T ss_pred ---CeeEEEEEC
Confidence 899988764
No 231
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=70.70 E-value=1.9 Score=36.70 Aligned_cols=66 Identities=18% Similarity=0.369 Sum_probs=46.0
Q ss_pred CCCeEEEcCCCCC------------ccHHHHHHHHhhcCCeeEEEEcc--------CCC-----CCce---------EEE
Q 022981 5 FSRTIYVGNLPSD------------IREYEVEDLFYKYGRILDIELKI--------PPR-----PPCY---------CFV 50 (289)
Q Consensus 5 ~~~~l~V~nLp~~------------~t~~~L~~~F~~~G~i~~v~~~~--------~~~-----~~g~---------afV 50 (289)
-..||++.+||-. -+++-|...|..||.|..|.|+. +++ ..|| |||
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 3468999999864 47788999999999999988832 122 2333 356
Q ss_pred EEccHHHHHHHHHHhCCcee
Q 022981 51 EFENARDAEDAIRGRDGYNF 70 (289)
Q Consensus 51 ~f~~~~~A~~A~~~l~g~~~ 70 (289)
+|....--..||..|-|+.+
T Consensus 228 qfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHhHHHHHHHHhcchH
Confidence 66666666677777777665
No 232
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=68.08 E-value=27 Score=30.10 Aligned_cols=50 Identities=16% Similarity=0.158 Sum_probs=37.0
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCCh
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNP 191 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~ 191 (289)
...+-|+++||+.++...||+..+.+.+.+- +.|.+... .+.||+.|.+.
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~iswkg~-------------------~~k~flh~~~~ 377 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKRECTP-MSISWKGH-------------------FGKCFLHFGNR 377 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCCCc-eeEeeecC-------------------CcceeEecCCc
Confidence 3345799999999999999999999876553 33333322 46899999664
No 233
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=64.35 E-value=17 Score=23.64 Aligned_cols=19 Identities=21% Similarity=0.406 Sum_probs=16.4
Q ss_pred HHHHHHHHhhcCCeeEEEE
Q 022981 20 EYEVEDLFYKYGRILDIEL 38 (289)
Q Consensus 20 ~~~L~~~F~~~G~i~~v~~ 38 (289)
..+|+++|+..|+|.-+.+
T Consensus 8 ~~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHHhcCcEEEEEE
Confidence 3689999999999987777
No 234
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=63.14 E-value=7.7 Score=34.75 Aligned_cols=66 Identities=20% Similarity=0.305 Sum_probs=49.2
Q ss_pred CCeEEEcCCCCCccHHHHHHHHhhcCCeeE-EEEcc-----CCCCCceEEEEEccHHHHHHHHHHhCCceeC
Q 022981 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILD-IELKI-----PPRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (289)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~-v~~~~-----~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 71 (289)
-..|.|.+||+.+++.+|.+-...|-.-.. ..+.. .....+.|||.|..+++.......++|..|.
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 456889999999999999988877653322 22221 1234678999999999999999888887764
No 235
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=58.37 E-value=1.5 Score=41.03 Aligned_cols=72 Identities=18% Similarity=0.196 Sum_probs=55.6
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEE
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 76 (289)
.+++|||.|++++++-++|..++..+--+..+.+... .....+.+|.|.-.-....|+.+||+.-+....+.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~s 304 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFLS 304 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccccc
Confidence 4578999999999999999999999877777766332 24456889999877777788888888776554443
No 236
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=57.91 E-value=4.9 Score=39.56 Aligned_cols=11 Identities=9% Similarity=0.271 Sum_probs=5.0
Q ss_pred ceEEEEEccHH
Q 022981 46 CYCFVEFENAR 56 (289)
Q Consensus 46 g~afV~f~~~~ 56 (289)
.|+.+......
T Consensus 60 ~y~~t~~~~~q 70 (1194)
T KOG4246|consen 60 VYGSTSLSSSQ 70 (1194)
T ss_pred cccccchhhhh
Confidence 34555544333
No 237
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=53.64 E-value=49 Score=30.12 Aligned_cols=78 Identities=18% Similarity=0.381 Sum_probs=57.0
Q ss_pred CCCCCeEEEcCCCCC-ccHHHHHHHHhhc----CCeeEEEEccC-------------C----------------------
Q 022981 3 GRFSRTIYVGNLPSD-IREYEVEDLFYKY----GRILDIELKIP-------------P---------------------- 42 (289)
Q Consensus 3 ~~~~~~l~V~nLp~~-~t~~~L~~~F~~~----G~i~~v~~~~~-------------~---------------------- 42 (289)
+.++..|-|-||.++ +...+|..+|+.| |+|..|.|..+ |
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn 222 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDN 222 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCcc
Confidence 467888999999987 8889999999866 57777776211 0
Q ss_pred ----CC----------C-------------------ceEEEEEccHHHHHHHHHHhCCceeCC--ceEEEEEc
Q 022981 43 ----RP----------P-------------------CYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVELA 80 (289)
Q Consensus 43 ----~~----------~-------------------g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~~ 80 (289)
.. . =||.|++.+.+.+...+..++|..+.. ..+.+.|.
T Consensus 223 ~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfv 295 (622)
T COG5638 223 VFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFV 295 (622)
T ss_pred chhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeec
Confidence 00 1 178899999999999999999988854 44444443
No 238
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=51.48 E-value=21 Score=28.58 Aligned_cols=64 Identities=14% Similarity=0.070 Sum_probs=40.1
Q ss_pred CeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC--C--CCCceEEEEEccHHHHHHHHHHhCCceeCCceE
Q 022981 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--P--RPPCYCFVEFENARDAEDAIRGRDGYNFDGCRL 75 (289)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~--~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 75 (289)
+++|.. +.+...++|.++-+ |.+..|.+... + ..+|-.||+|.+.++|...++ -+...+....|
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~-~~e~~~~e~el 179 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDD-THEEKGAETEL 179 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhh-hhhhhccchHH
Confidence 344444 33344444444444 78989888442 2 458999999999999998877 34444433333
No 239
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=50.94 E-value=44 Score=23.38 Aligned_cols=50 Identities=18% Similarity=0.189 Sum_probs=35.0
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFE 53 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~ 53 (289)
+...-||||+++..+-+.-...+.+..+.-.-+-+..+....||+|-.+-
T Consensus 23 Ei~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~G 72 (86)
T PF09707_consen 23 EIRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTLG 72 (86)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEeC
Confidence 45667999999998887666666665554444444445557899998873
No 240
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=49.14 E-value=47 Score=23.87 Aligned_cols=52 Identities=23% Similarity=0.247 Sum_probs=39.3
Q ss_pred CCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCC
Q 022981 16 SDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG 67 (289)
Q Consensus 16 ~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 67 (289)
.+-++++|..+...-|.|.+|.+.......-.|.+...+..+++..++.|+.
T Consensus 7 ~~~~~~EL~~IVd~Gg~V~DV~veHp~YG~i~~~L~i~sr~Dv~~Fi~~l~~ 58 (98)
T PF02829_consen 7 PDEIEDELEIIVDNGGRVLDVIVEHPVYGEITGNLNISSRRDVDKFIEKLEK 58 (98)
T ss_dssp GGGHHHHHHHHHHTT-EEEEEEEEETTTEEEEEEEEE-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEeCCCCcEEEEEEecCCHHHHHHHHHHHhc
Confidence 4456788888888778999999966543355778889999999999998853
No 241
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=47.75 E-value=76 Score=24.60 Aligned_cols=54 Identities=15% Similarity=0.230 Sum_probs=36.8
Q ss_pred EEcCCCCCccHHHHHHHHhh-cC-CeeEEEEccCCCCCceEEEEEccHHHHHHHHH
Q 022981 10 YVGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (289)
Q Consensus 10 ~V~nLp~~~t~~~L~~~F~~-~G-~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~ 63 (289)
|+--+...++..||.+.++. |+ .|..|.........--|||.+....+|.....
T Consensus 85 yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 85 LVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVAN 140 (145)
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 34457789999999999987 55 55555554333234479999987777655443
No 242
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=46.16 E-value=90 Score=22.66 Aligned_cols=42 Identities=12% Similarity=0.156 Sum_probs=27.9
Q ss_pred HHHHHHHhhcCCeeEEEEccC-CCCCceEEEEEccHHHHHHHHH
Q 022981 21 YEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIR 63 (289)
Q Consensus 21 ~~L~~~F~~~G~i~~v~~~~~-~~~~g~afV~f~~~~~A~~A~~ 63 (289)
.+|..++..+|. .+-.|..+ ..+.-||++++.|.+....+|.
T Consensus 27 PE~~a~lk~agi-~nYSIfLde~~n~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 27 PELLALLKEAGI-RNYSIFLDEEENLLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred HHHHHHHHHcCC-ceeEEEecCCcccEEEEEEEcChHHHHHHHh
Confidence 356778888884 34334333 3557899999997666666554
No 243
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=43.63 E-value=50 Score=28.58 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=11.3
Q ss_pred EEccHHHHHHHHHHhCC-ceeCCceEEEEE
Q 022981 51 EFENARDAEDAIRGRDG-YNFDGCRLRVEL 79 (289)
Q Consensus 51 ~f~~~~~A~~A~~~l~g-~~~~g~~l~v~~ 79 (289)
-|++.--.+-.+..|.. ..++-+.|+|.+
T Consensus 58 gfEDdVViefvynqLee~k~ldpkkmQiNl 87 (354)
T KOG2146|consen 58 GFEDDVVIEFVYNQLEEAKNLDPKKMQINL 87 (354)
T ss_pred ccccchhHHHHHHHHhhhcCCCchheeeee
Confidence 34443333333333333 334444444443
No 244
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=43.06 E-value=23 Score=29.68 Aligned_cols=35 Identities=11% Similarity=0.233 Sum_probs=29.6
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEE
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL 38 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~ 38 (289)
.+..+||+-|||..+|++-|..+.+++|-+..+.+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 56788999999999999999999999996554433
No 245
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=42.10 E-value=61 Score=21.51 Aligned_cols=60 Identities=20% Similarity=0.258 Sum_probs=40.9
Q ss_pred HHHHHHHhhcC-CeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCC
Q 022981 21 YEVEDLFYKYG-RILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (289)
Q Consensus 21 ~~L~~~F~~~G-~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (289)
++|.+-|...| +|..|.-+.. ..+...-||+.+...+...+ ++=..+.+..+.|+.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCCC
Confidence 57888888888 6766655443 45566888888776664444 3346778899999876543
No 246
>KOG2812 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.01 E-value=29 Score=30.89 Aligned_cols=9 Identities=56% Similarity=0.730 Sum_probs=4.3
Q ss_pred CCCCCCCcC
Q 022981 277 RSVSPDKVR 285 (289)
Q Consensus 277 rsrs~~~~r 285 (289)
++|+|.+++
T Consensus 87 ~sRs~sr~r 95 (426)
T KOG2812|consen 87 RSRSPSRDR 95 (426)
T ss_pred cccCCCccc
Confidence 445554443
No 247
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=41.88 E-value=53 Score=28.91 Aligned_cols=32 Identities=25% Similarity=0.216 Sum_probs=23.5
Q ss_pred EEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 48 CFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 48 afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
|||+|.+..+|+.|.+.+.... ...+.|..|.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCC
Confidence 7999999999999999554332 3455666654
No 248
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=40.99 E-value=21 Score=20.50 Aligned_cols=17 Identities=18% Similarity=0.432 Sum_probs=10.5
Q ss_pred CCccHHHHHHHHhhcCC
Q 022981 16 SDIREYEVEDLFYKYGR 32 (289)
Q Consensus 16 ~~~t~~~L~~~F~~~G~ 32 (289)
.++++++|++.|.+.+.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 46899999999987653
No 249
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=39.82 E-value=64 Score=23.15 Aligned_cols=52 Identities=15% Similarity=0.146 Sum_probs=33.2
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccH
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENA 55 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~ 55 (289)
+...-||||+++..+-+.--..+-+.++.=.-+-+..+....||+|-++-+.
T Consensus 25 Ev~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 25 EVRAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWATNTESGFEFQTFGEN 76 (97)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCCcEEEecCCC
Confidence 4556799999888877655445555454433333344556679999887643
No 250
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=39.30 E-value=91 Score=19.07 Aligned_cols=42 Identities=17% Similarity=0.208 Sum_probs=28.6
Q ss_pred HHHHHHHhhcC-CeeEEEEccCCCCCceEEEEEccHHHHHHHH
Q 022981 21 YEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAI 62 (289)
Q Consensus 21 ~~L~~~F~~~G-~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~ 62 (289)
.+|.++|.+.| .|..+.+.......+..-+.+.+.+.|.+++
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 45667777766 7777776544344667777788877777665
No 251
>KOG3869 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.17 E-value=11 Score=34.12 Aligned_cols=9 Identities=67% Similarity=0.752 Sum_probs=3.6
Q ss_pred CCCCCCCCC
Q 022981 275 RSRSVSPDK 283 (289)
Q Consensus 275 rsrsrs~~~ 283 (289)
++|++||.+
T Consensus 292 rsrsrS~~~ 300 (450)
T KOG3869|consen 292 RSRSRSPLR 300 (450)
T ss_pred hhcccCccc
Confidence 334444433
No 252
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=39.09 E-value=65 Score=22.23 Aligned_cols=36 Identities=31% Similarity=0.366 Sum_probs=24.5
Q ss_pred CeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCce
Q 022981 32 RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYN 69 (289)
Q Consensus 32 ~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 69 (289)
.|..+... +..+||-|||=.++.++..|+..+.+..
T Consensus 33 ~I~Si~~~--~~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 33 NIYSIFAP--DSLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp ---EEEE---TTSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred ceEEEEEe--CCCceEEEEEeCCHHHHHHHHhccccee
Confidence 44555333 3469999999999999999998775543
No 253
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=39.05 E-value=16 Score=25.78 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=20.4
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHH
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLF 27 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F 27 (289)
-..++|.|.|||..+.+++|++.+
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeE
Confidence 356899999999999999998654
No 254
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=38.70 E-value=1.2e+02 Score=20.28 Aligned_cols=43 Identities=16% Similarity=0.114 Sum_probs=30.3
Q ss_pred HHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHh
Q 022981 21 YEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65 (289)
Q Consensus 21 ~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l 65 (289)
.+|.+.+..+| +....+.-.+ .-++.|+.+.+.+.++++...|
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG-~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSG-GGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTS-SSSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCC-CCCeEEEEECCHHHHHHHHHHH
Confidence 45667778888 6566665441 1358888888999988888766
No 255
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=37.63 E-value=1.4e+02 Score=20.77 Aligned_cols=57 Identities=14% Similarity=0.081 Sum_probs=42.4
Q ss_pred eeecCCCCCCCHHHHHHHHHh-cC-CeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhc
Q 022981 127 VIVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKL 201 (289)
Q Consensus 127 l~v~nlp~~~~~~~l~~~f~~-~g-~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 201 (289)
-++-..+..++..+|++.++. || .|..+.....+.+ .--|||.+..-..|.+....+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~------------------~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKG------------------EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC------------------cEEEEEEeCCCCcHHHHHHhh
Confidence 444456788999999999998 55 5777776665554 358999999998888876543
No 256
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=36.23 E-value=1.1e+02 Score=25.02 Aligned_cols=47 Identities=15% Similarity=0.070 Sum_probs=35.0
Q ss_pred ccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHh
Q 022981 18 IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65 (289)
Q Consensus 18 ~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l 65 (289)
.+.++..++...++.-. +-|+.++...|-+-+...+.++|..|+..+
T Consensus 24 ~~~~~A~~~l~~~~~p~-~ViKadGla~GKGV~i~~~~~eA~~~l~~~ 70 (194)
T PF01071_consen 24 TDYEEALEYLEEQGYPY-VVIKADGLAAGKGVVIADDREEALEALREI 70 (194)
T ss_dssp SSHHHHHHHHHHHSSSE-EEEEESSSCTTTSEEEESSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCc-eEEccCCCCCCCEEEEeCCHHHHHHHHHHh
Confidence 46788888888876443 445667666666677779999999999876
No 257
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=35.76 E-value=1e+02 Score=26.95 Aligned_cols=63 Identities=6% Similarity=0.012 Sum_probs=44.6
Q ss_pred eeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHH
Q 022981 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKY 196 (289)
Q Consensus 126 ~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~ 196 (289)
.|.+.|+..+++-..+...|-+||+|+++.+..+.... .-+-+.-+......+-|-+.+.+..
T Consensus 17 SLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~--------~d~~~~d~~~~SilLSFlsr~~CLd 79 (309)
T PF10567_consen 17 SLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKP--------SDDYNDDKNNQSILLSFLSREICLD 79 (309)
T ss_pred HHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcc--------cccccccccceEEEEeeechHHHHH
Confidence 68889999999999999999999999999999876100 0000011334567777877766554
No 258
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=35.54 E-value=1.2e+02 Score=19.38 Aligned_cols=44 Identities=14% Similarity=0.181 Sum_probs=29.1
Q ss_pred cHHHHHHHHhhcC-CeeEEEEccCCCCCceEEEEEccHHHHHHHHH
Q 022981 19 REYEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (289)
Q Consensus 19 t~~~L~~~F~~~G-~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~ 63 (289)
.-.+|.++|.+.| .|..+.+..... +++.-+.+.+.+.|.+++.
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~-~~~~rl~~~~~~~~~~~L~ 58 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSE-FGILRLIVSDPDKAKEALK 58 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCC-CCEEEEEECCHHHHHHHHH
Confidence 3466888888877 677777644433 4565566677667777766
No 259
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.31 E-value=2.4e+02 Score=27.15 Aligned_cols=84 Identities=21% Similarity=0.216 Sum_probs=61.0
Q ss_pred CCcceeeecCCCCC-CCHHHHHHHHHhc----CCeeEEEEeeCCCCCC--------ch----------------------
Q 022981 122 HSEYRVIVRGLPSS-ASWQDLKDHMRKA----GDVCFAEVSRDSEGWQ--------SP---------------------- 166 (289)
Q Consensus 122 ~~~~~l~v~nlp~~-~~~~~l~~~f~~~----g~v~~~~i~~~~~~~~--------~~---------------------- 166 (289)
....+|-|.|+.+. +...+|.-+|..| |.|.+|.|....-|.. -|
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 44568999999975 5778999988876 6888888876433221 01
Q ss_pred -----hHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCC
Q 022981 167 -----AMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRN 208 (289)
Q Consensus 167 -----~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~ 208 (289)
....|.++.+- .-||.|+|.+.+.|.+.++..+|.+|..
T Consensus 252 ~~~~~kLR~Yq~~rLk---YYyAVvecDsi~tA~~vYe~CDG~EfEs 295 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLK---YYYAVVECDSIETAKAVYEECDGIEFES 295 (650)
T ss_pred hHHHHHHHHHHhhhhe---eEEEEEEecCchHHHHHHHhcCcceecc
Confidence 01344444432 3599999999999999999999999984
No 260
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=34.01 E-value=1.6e+02 Score=21.01 Aligned_cols=55 Identities=18% Similarity=0.343 Sum_probs=33.8
Q ss_pred eEEEcCCCCCccHHHHHHHHhhc--------CCeeEEEE--------ccCCCCCc-eEEEEEccHHHHHHHHHH
Q 022981 8 TIYVGNLPSDIREYEVEDLFYKY--------GRILDIEL--------KIPPRPPC-YCFVEFENARDAEDAIRG 64 (289)
Q Consensus 8 ~l~V~nLp~~~t~~~L~~~F~~~--------G~i~~v~~--------~~~~~~~g-~afV~f~~~~~A~~A~~~ 64 (289)
++|| |.++++++++..+..++ |.|..+.- ...+...| |.++.|.-..++.+.++.
T Consensus 10 ~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler 81 (97)
T CHL00123 10 TMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEK 81 (97)
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHH
Confidence 4454 56777888877765443 46655543 11244556 678888877676666653
No 261
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=33.26 E-value=45 Score=29.36 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=19.2
Q ss_pred EEEecCChHHHHHHHHhcCCcc
Q 022981 184 GVVDYTNPEDMKYAIRKLDDTE 205 (289)
Q Consensus 184 ~fv~f~~~~~a~~a~~~~~~~~ 205 (289)
|||+|++..+|..|++.+....
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~ 22 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR 22 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC
Confidence 7999999999999999766665
No 262
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.14 E-value=8.3 Score=35.22 Aligned_cols=76 Identities=7% Similarity=-0.137 Sum_probs=58.3
Q ss_pred CCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccC
Q 022981 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (289)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 82 (289)
+...|+..||..++++++.-+|..||-|..+.+.. ++-..-.+||.-.+ .+|..+|..+-...+.|..+.|.++..
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 44567889999999999999999999998887732 33445577777654 667778877877888888888877753
No 263
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=31.56 E-value=1e+02 Score=29.19 Aligned_cols=59 Identities=19% Similarity=0.216 Sum_probs=42.9
Q ss_pred EEcCCCCCccH---HHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceE
Q 022981 10 YVGNLPSDIRE---YEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRL 75 (289)
Q Consensus 10 ~V~nLp~~~t~---~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 75 (289)
+||||+.-... ..|..+=.+||+|..+++=. .-.|.-.+.+.|+.|+. -++..+.+|+.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~------~~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS------VPVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC------ceEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 46777554333 44555556899999887721 23688889999999999 68999999886
No 264
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=31.18 E-value=1.9e+02 Score=22.53 Aligned_cols=33 Identities=36% Similarity=0.436 Sum_probs=25.1
Q ss_pred eeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCC
Q 022981 33 ILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG 67 (289)
Q Consensus 33 i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 67 (289)
|.+|.+. ...+||.||+....+++..++..+.+
T Consensus 36 i~~i~vp--~~fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 36 IYAILAP--PELKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred EEEEEcc--CCCCcEEEEEEEChHHHHHHHhcCCC
Confidence 5555543 34689999999988999999987654
No 265
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=29.79 E-value=1.2e+02 Score=20.26 Aligned_cols=62 Identities=16% Similarity=0.207 Sum_probs=40.3
Q ss_pred HHHHHHHHhcC-CeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeee
Q 022981 139 QDLKDHMRKAG-DVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 217 (289)
Q Consensus 139 ~~l~~~f~~~g-~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v 217 (289)
++|.+.|.++| ++..+.-+...+ +..+-+.-+|+.....+... .|+=+.++ +..+.|
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~---------------~r~P~nmf~vel~~~~~~~~---Il~ik~Lg----~~~V~V 59 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRD---------------TKNPQNMFEVELVPAANGKE---ILNIKTLG----GQRVTV 59 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccC---------------CCCcceeEEEEeeecCCCcc---eEeehhhC----CeeEEE
Confidence 46788888887 677777776666 33566788888766543322 34445555 778888
Q ss_pred eccCC
Q 022981 218 KRYDR 222 (289)
Q Consensus 218 ~~~~~ 222 (289)
+....
T Consensus 60 Er~~k 64 (69)
T smart00596 60 ERPHK 64 (69)
T ss_pred ecCcc
Confidence 77653
No 266
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=29.72 E-value=65 Score=21.45 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=20.8
Q ss_pred ceEEEEEccHHHHHHHHHHhCCcee
Q 022981 46 CYCFVEFENARDAEDAIRGRDGYNF 70 (289)
Q Consensus 46 g~afV~f~~~~~A~~A~~~l~g~~~ 70 (289)
.+++|.|.+..+|.+|-+.|....+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCC
Confidence 4789999999999999998865544
No 267
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=29.65 E-value=1.1e+02 Score=21.40 Aligned_cols=51 Identities=16% Similarity=0.125 Sum_probs=30.4
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhh-cCCeeEEEEccCCCCCceEEEEEcc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYK-YGRILDIELKIPPRPPCYCFVEFEN 54 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~i~~v~~~~~~~~~g~afV~f~~ 54 (289)
+...-|||++++..+-+.--..+-+. .+.=.-+-+..+....||+|-++-+
T Consensus 23 Ev~~GVyVg~~s~rVRe~lW~~v~~~~~~~G~avm~~~~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 23 EPRAGVYVGGVSASVRERIWDYLAQHCPPKGSLVITWSSNTCPGFEFFTLGE 74 (87)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHHhCCCCccEEEEEeCCCCCCcEEEecCC
Confidence 45667999999888765433333333 2332223334455668898887754
No 268
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=29.32 E-value=1.4e+02 Score=21.15 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=22.9
Q ss_pred EEEcCCCCCccHHHHHHHHhh-cC-CeeEEEE
Q 022981 9 IYVGNLPSDIREYEVEDLFYK-YG-RILDIEL 38 (289)
Q Consensus 9 l~V~nLp~~~t~~~L~~~F~~-~G-~i~~v~~ 38 (289)
.|+-.++..++..||++.|+. || +|..|..
T Consensus 22 ~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT 53 (92)
T PRK05738 22 KYVFEVAPDATKPEIKAAVEKLFGVKVESVNT 53 (92)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCceeEEEE
Confidence 444467889999999999987 66 5666655
No 269
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=28.84 E-value=1.5e+02 Score=18.49 Aligned_cols=54 Identities=15% Similarity=0.175 Sum_probs=41.2
Q ss_pred eEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccH----HHHHHHHHH
Q 022981 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENA----RDAEDAIRG 64 (289)
Q Consensus 8 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~----~~A~~A~~~ 64 (289)
|+.|.||.-.--...|.+.+...-.|..+.+... .+.+-|.|... ++..++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~---~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE---TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT---TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC---CCEEEEEEecCCCCHHHHHHHHHH
Confidence 5788888888888899999999988999888544 46888888744 455555553
No 270
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=28.81 E-value=55 Score=29.54 Aligned_cols=71 Identities=21% Similarity=0.336 Sum_probs=49.2
Q ss_pred cceeeecCCCCCCCHHHHHHHHHhcCC-eeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcC
Q 022981 124 EYRVIVRGLPSSASWQDLKDHMRKAGD-VCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLD 202 (289)
Q Consensus 124 ~~~l~v~nlp~~~~~~~l~~~f~~~g~-v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~ 202 (289)
-..|.|..||+.++++++.+....+-. |.+........+. -..-.+.|||.|...++...-...++
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~-------------~~~~ysrayinFk~~~dv~ef~~~f~ 73 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESL-------------RNHKYSRAYINFKNPEDVEEFRRRFD 73 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccc-------------hhhhhhhhhhccccHHHHHHHHhhCC
Confidence 347889999999999988887776432 2222222211110 11224689999999999999999999
Q ss_pred CcccC
Q 022981 203 DTEFR 207 (289)
Q Consensus 203 ~~~~~ 207 (289)
|+.|-
T Consensus 74 g~ifl 78 (376)
T KOG1295|consen 74 GYIFL 78 (376)
T ss_pred ceEEe
Confidence 99886
No 271
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.93 E-value=2.8e+02 Score=21.63 Aligned_cols=53 Identities=19% Similarity=0.305 Sum_probs=38.8
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhc---CCeeEEEEcc------------CCCCCc-eEEEEEccHHH
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKY---GRILDIELKI------------PPRPPC-YCFVEFENARD 57 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~---G~i~~v~~~~------------~~~~~g-~afV~f~~~~~ 57 (289)
....|++..+...+++++.++..++- +++..|.+-. +...+. |-+|.|++-..
T Consensus 86 d~~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~ 154 (161)
T COG5353 86 DDGKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKE 154 (161)
T ss_pred CCCeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchh
Confidence 34689999999999999999998864 4667776611 222344 89999988654
No 272
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=26.87 E-value=66 Score=30.42 Aligned_cols=40 Identities=40% Similarity=0.586 Sum_probs=35.4
Q ss_pred CCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCC
Q 022981 44 PPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (289)
Q Consensus 44 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (289)
-..|+++.|+++..+.+|+..++|..+.+..+.++.....
T Consensus 62 ~~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~ 101 (534)
T KOG2187|consen 62 MPKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATE 101 (534)
T ss_pred CCCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhcccc
Confidence 3569999999999999999999999999988888877654
No 273
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.97 E-value=1.7e+02 Score=26.82 Aligned_cols=55 Identities=9% Similarity=0.086 Sum_probs=42.0
Q ss_pred ceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 125 ~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
..|-|-++|.....+||-..|..|+.-. ++|.+-.+ ..||-.|.+...|..|+..
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kg-fdIkWvDd--------------------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKG-FDIKWVDD--------------------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCC-ceeEEeec--------------------ceeEEeecchHHHHHHhhc
Confidence 3788999999999999999999986432 23333222 3589999999999999874
No 274
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=24.71 E-value=1.7e+02 Score=20.74 Aligned_cols=53 Identities=15% Similarity=0.093 Sum_probs=34.5
Q ss_pred cCCCCCccHHHHHHHHhhcCCee-EEEEccCCCCCceEEEEEccHHHHHHHHHHh
Q 022981 12 GNLPSDIREYEVEDLFYKYGRIL-DIELKIPPRPPCYCFVEFENARDAEDAIRGR 65 (289)
Q Consensus 12 ~nLp~~~t~~~L~~~F~~~G~i~-~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l 65 (289)
-.+-+.++...|..-|-.-|.-. -..+. -+.=+.+|-|+|.+.+.+..|.+.|
T Consensus 18 YS~~p~l~~~~i~~Q~~~~gkk~~pp~lR-kD~W~pm~vv~f~~~~~g~~~yq~L 71 (91)
T PF12829_consen 18 YSQTPNLDNNQILKQFPFPGKKNKPPSLR-KDYWRPMCVVNFPNYEVGVSAYQKL 71 (91)
T ss_pred EecCcccChhHHHHhccCCCcccCCchhc-cccceEeEEEECCChHHHHHHHHHH
Confidence 35666778888776666555211 11111 1122569999999999999999876
No 275
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=24.69 E-value=1.9e+02 Score=19.42 Aligned_cols=39 Identities=28% Similarity=0.395 Sum_probs=27.9
Q ss_pred HHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCcee
Q 022981 26 LFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF 70 (289)
Q Consensus 26 ~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 70 (289)
-+.+||.|..+.=. ..|+ |-|-+.++++..++.|....|
T Consensus 16 ~L~kfG~i~Y~Skk-----~kYv-vlYvn~~~~e~~~~kl~~l~f 54 (71)
T PF09902_consen 16 QLRKFGDIHYVSKK-----MKYV-VLYVNEEDVEEIIEKLKKLKF 54 (71)
T ss_pred hHhhcccEEEEECC-----ccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 35679998776332 3354 668899999999998876554
No 276
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=24.56 E-value=26 Score=31.14 Aligned_cols=48 Identities=17% Similarity=-0.006 Sum_probs=37.5
Q ss_pred HHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCc
Q 022981 20 EYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68 (289)
Q Consensus 20 ~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 68 (289)
...|.+++.+.|.|..-.+..+ -+-|.+||..-.+++++++++.|++.
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rt-FNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRT-FNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHH-hcCccceEEEEcHHHHHHHHHHHHhc
Confidence 4678888889998876655433 22688999999999999999988764
No 277
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=24.07 E-value=1e+02 Score=26.51 Aligned_cols=32 Identities=28% Similarity=0.176 Sum_probs=24.6
Q ss_pred CeEEEcCCCCCccHHHHHHHHhhcCCeeEEEE
Q 022981 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIEL 38 (289)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~ 38 (289)
-...|+|||+++|..-|..++...-.+..+.+
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~ 127 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVL 127 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEE
Confidence 45679999999999999999987555544433
No 278
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=23.94 E-value=2.3e+02 Score=23.26 Aligned_cols=53 Identities=13% Similarity=0.156 Sum_probs=37.8
Q ss_pred ccHHHHHHHHhhcCC---eeEEEEccCCCCCceEEEEE-ccHHHHHHHHHHhCCceeC
Q 022981 18 IREYEVEDLFYKYGR---ILDIELKIPPRPPCYCFVEF-ENARDAEDAIRGRDGYNFD 71 (289)
Q Consensus 18 ~t~~~L~~~F~~~G~---i~~v~~~~~~~~~g~afV~f-~~~~~A~~A~~~l~g~~~~ 71 (289)
.+.+++.+.....|. |....+...++.++ +-|.+ .++++|..+...|=|..+.
T Consensus 25 ~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~-GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 25 TSPEEAREAAKELGGKPLVVKAQVLAGGRGKA-GGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp SSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTT-TCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred CCHHHHHHHHHHhCCCcEEEEEeEeecCcccC-CceeecCCHHHHHHHHHHHhCCceE
Confidence 577888888877663 55555555566666 44444 5789999999989888876
No 279
>PF15063 TC1: Thyroid cancer protein 1
Probab=23.77 E-value=53 Score=22.26 Aligned_cols=47 Identities=13% Similarity=0.125 Sum_probs=31.1
Q ss_pred EEcCCCCCccHHHHHHHHhhcCCeeE---EEEccCCCCCceEEEEEccHHHHHHHHHHh
Q 022981 10 YVGNLPSDIREYEVEDLFYKYGRILD---IELKIPPRPPCYCFVEFENARDAEDAIRGR 65 (289)
Q Consensus 10 ~V~nLp~~~t~~~L~~~F~~~G~i~~---v~~~~~~~~~g~afV~f~~~~~A~~A~~~l 65 (289)
-+.||=.+++.++|+.||..-|..+- .++++ -...++++..+||..|
T Consensus 29 asaNIFe~vn~~qlqrLF~~sGD~kAEeRA~iI~---------~~~~d~ee~a~AL~~L 78 (79)
T PF15063_consen 29 ASANIFENVNLDQLQRLFQKSGDKKAEERARIIW---------ECAQDPEEKARALMAL 78 (79)
T ss_pred hhhhhhhccCHHHHHHHHHHccchhHHHHHHHHH---------hhCCCHHHHHHHHHhc
Confidence 35678889999999999999996532 33332 1234566666666544
No 280
>PRK11901 hypothetical protein; Reviewed
Probab=22.74 E-value=2.2e+02 Score=25.34 Aligned_cols=59 Identities=15% Similarity=0.168 Sum_probs=37.9
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCC-C-ceEEE--EEccHHHHHHHHHHhCC
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRP-P-CYCFV--EFENARDAEDAIRGRDG 67 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~-~-g~afV--~f~~~~~A~~A~~~l~g 67 (289)
...+|.|..+ ..++.|..|..+.+ +..++++.+.+. + =|..| .|.+.++|..|+..|-.
T Consensus 244 ~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 244 SHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCH
Confidence 3455666554 45778888888775 455666544211 1 13333 68999999999998854
No 281
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=22.41 E-value=2.2e+02 Score=20.00 Aligned_cols=48 Identities=15% Similarity=0.262 Sum_probs=31.6
Q ss_pred EEcCCCCCccHHHHHHHHhh-cC-CeeEEEEcc-C------CCC------CceEEEEEccHHH
Q 022981 10 YVGNLPSDIREYEVEDLFYK-YG-RILDIELKI-P------PRP------PCYCFVEFENARD 57 (289)
Q Consensus 10 ~V~nLp~~~t~~~L~~~F~~-~G-~i~~v~~~~-~------~~~------~g~afV~f~~~~~ 57 (289)
++-.+++.+|.-||++.++. || +|..|.... . +.. .--|+|++...+.
T Consensus 23 ~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR~g~~~g~~~~~KKaiVtL~~~~~ 85 (91)
T PF00276_consen 23 YTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKRKGKFVGKTKDYKKAIVTLKEGDK 85 (91)
T ss_dssp EEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEESSSCEEEE-EEEEEEEEESTTSC
T ss_pred EEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceEeCCccccCCCcEEEEEEeCCCCc
Confidence 34467889999999999987 66 555665522 1 111 1368888887643
No 282
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=21.91 E-value=2.3e+02 Score=21.17 Aligned_cols=49 Identities=16% Similarity=0.137 Sum_probs=27.3
Q ss_pred CCCHHHHHHHHHh-cCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHH
Q 022981 135 SASWQDLKDHMRK-AGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMK 195 (289)
Q Consensus 135 ~~~~~~l~~~f~~-~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~ 195 (289)
.++.+||++-+.+ |-.-.++.++-+ |..++-+|.+.|||.| |.+.+.|.
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfg-----------frt~~GggkstgfalI-Ydsve~ak 83 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFG-----------FRTHFGGGKSTGFALI-YDSVEYAK 83 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEE-----------eeeccCCcccceeeee-eehHHHHH
Confidence 4566777777665 322222222111 2234447889999988 66666554
No 283
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.64 E-value=64 Score=26.73 Aligned_cols=30 Identities=30% Similarity=0.595 Sum_probs=17.5
Q ss_pred HHHHHHHh-hcCCeeEEEEccCCCCCceEEEEEccH
Q 022981 21 YEVEDLFY-KYGRILDIELKIPPRPPCYCFVEFENA 55 (289)
Q Consensus 21 ~~L~~~F~-~~G~i~~v~~~~~~~~~g~afV~f~~~ 55 (289)
+||.+.|. .||.- ..+...+.||||+|.+-
T Consensus 89 edL~~EF~~~~~~~-----~~~~~~RPY~FieFD~~ 119 (216)
T KOG0862|consen 89 EDLAQEFDKSYGKN-----IIQPASRPYAFIEFDTF 119 (216)
T ss_pred HHHHHHHHHhcccc-----cCCccCCCeeEEehhHH
Confidence 45555554 35532 12234578999999864
No 284
>KOG1888 consensus Putative phosphoinositide phosphatase [Lipid transport and metabolism]
Probab=21.39 E-value=2.5e+02 Score=28.21 Aligned_cols=69 Identities=16% Similarity=0.157 Sum_probs=43.5
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcC-CeeEEEEccCC-CCCceEEEEEccHHHHHHHHHHhCCceeCCceEE
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYG-RILDIELKIPP-RPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G-~i~~v~~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 76 (289)
+|.-.|-....-+.++.....++|..|| +|.-+.++.++ +.+.-+ --.++-+.||..||.....-..|+
T Consensus 309 KP~I~l~~~DP~y~~a~lHF~~L~~RYG~PIiilNLIKt~ekr~~E~----IL~~eF~~ai~yLNqflp~e~rl~ 379 (868)
T KOG1888|consen 309 KPDIVLDKRDPFYETAALHFDNLVQRYGNPIIILNLIKTNEKRPRES----ILREEFENAIDYLNQFLPPENRLK 379 (868)
T ss_pred CCCeEEeccCCccchHHHHHHHHHHhcCCcEEEEEeeccccCCchhH----HHHHHHHHHHHHHhccCCCcceee
Confidence 4443343333345688899999999999 77777887665 223221 224667788888885554444444
No 285
>PRK02302 hypothetical protein; Provisional
Probab=21.17 E-value=2.3e+02 Score=19.96 Aligned_cols=38 Identities=26% Similarity=0.417 Sum_probs=27.4
Q ss_pred HhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCcee
Q 022981 27 FYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF 70 (289)
Q Consensus 27 F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 70 (289)
+.+||.|..+.=. ..|+ |-|-+.++|+..++.|....|
T Consensus 23 LrkfG~I~Y~Skk-----~kYv-vlYvn~~~~e~~~~kl~~l~f 60 (89)
T PRK02302 23 LSKYGDIVYHSKR-----SRYL-VLYVNKEDVEQKLEELSKLKF 60 (89)
T ss_pred HhhcCcEEEEecc-----ccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 5689998776332 2354 678899999999998865544
No 286
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=20.71 E-value=8.3e+02 Score=24.15 Aligned_cols=59 Identities=15% Similarity=0.120 Sum_probs=35.6
Q ss_pred CCeEEEcCCCCCccHHHHHHHHhh---cCCeeEEEEccCCCCCceEE-EEEccHHHHHHHHHHh
Q 022981 6 SRTIYVGNLPSDIREYEVEDLFYK---YGRILDIELKIPPRPPCYCF-VEFENARDAEDAIRGR 65 (289)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~---~G~i~~v~~~~~~~~~g~af-V~f~~~~~A~~A~~~l 65 (289)
..+|.|.-||+.++.+.|.+.... -|.|. |.-+.|-...+..| |++.....++..+..|
T Consensus 220 ~~~ivItEiP~~~~~~~li~~i~~~~~~~ki~-I~~i~D~s~~~v~i~i~l~~~~~~~~~~~~L 282 (635)
T PRK09631 220 EKTIVIREIPFGTTTESLIASIEKAARKGKIK-ISSINDYTAENVEIEIKLPRGVYASEVIEAL 282 (635)
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHcCCCc-cceeEeCCCCcEEEEEEECCCCCHHHHHHHH
Confidence 468999999999999999887543 34443 22222222234444 3455555666555544
Done!