Query 022981
Match_columns 289
No_of_seqs 266 out of 2684
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 14:21:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022981.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022981hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3md3_A Nuclear and cytoplasmic 100.0 7.4E-34 2.5E-38 226.3 19.7 163 7-221 1-165 (166)
2 4f02_A Polyadenylate-binding p 100.0 2.5E-34 8.7E-39 239.1 17.6 165 4-222 13-180 (213)
3 1b7f_A Protein (SXL-lethal pro 100.0 1.5E-33 5.2E-38 225.2 20.3 164 5-220 2-168 (168)
4 1fxl_A Paraneoplastic encephal 100.0 3.9E-33 1.3E-37 222.3 20.5 162 5-220 1-167 (167)
5 1l3k_A Heterogeneous nuclear r 100.0 3.3E-33 1.1E-37 228.9 19.3 172 4-225 11-185 (196)
6 3tyt_A Heterogeneous nuclear r 100.0 1E-32 3.6E-37 227.7 20.3 194 4-220 2-204 (205)
7 2qfj_A FBP-interacting repress 100.0 1.4E-32 5E-37 228.4 19.8 177 5-224 27-206 (216)
8 2g4b_A Splicing factor U2AF 65 100.0 2.4E-32 8.4E-37 219.1 19.2 159 4-220 2-171 (172)
9 3nmr_A Cugbp ELAV-like family 100.0 1.8E-32 6.1E-37 220.3 18.0 166 5-221 2-175 (175)
10 2yh0_A Splicing factor U2AF 65 100.0 1.1E-31 3.7E-36 220.2 22.9 183 4-224 2-195 (198)
11 2cjk_A Nuclear polyadenylated 100.0 7.4E-33 2.5E-37 221.1 14.2 162 4-222 1-165 (167)
12 2adc_A Polypyrimidine tract-bi 100.0 5E-31 1.7E-35 221.6 22.5 194 4-222 32-227 (229)
13 3pgw_A U1-A; protein-RNA compl 100.0 1.4E-30 4.6E-35 225.5 25.1 196 3-221 6-281 (282)
14 1qm9_A Polypyrimidine tract-bi 100.0 4.4E-31 1.5E-35 216.8 20.5 193 5-222 2-196 (198)
15 1fje_B Nucleolin RBD12, protei 100.0 8E-32 2.7E-36 216.9 12.5 162 4-223 11-174 (175)
16 3smz_A Protein raver-1, ribonu 100.0 3.8E-30 1.3E-34 222.9 19.6 170 4-225 93-266 (284)
17 3sde_A Paraspeckle component 1 100.0 3.1E-30 1.1E-34 221.0 17.8 159 4-222 20-178 (261)
18 3smz_A Protein raver-1, ribonu 100.0 8.7E-30 3E-34 220.6 20.1 155 4-222 20-174 (284)
19 2ghp_A U4/U6 snRNA-associated 100.0 5.9E-30 2E-34 222.6 18.4 172 5-223 116-291 (292)
20 2ghp_A U4/U6 snRNA-associated 100.0 2E-29 6.9E-34 219.2 18.4 157 4-223 39-197 (292)
21 4f25_A Polyadenylate-binding p 99.9 4.7E-24 1.6E-28 159.8 9.8 109 5-140 4-113 (115)
22 2kn4_A Immunoglobulin G-bindin 99.9 6.8E-22 2.3E-26 156.3 13.1 148 36-224 3-151 (158)
23 3pgw_S U1-70K; protein-RNA com 99.9 4.7E-21 1.6E-25 174.7 19.1 81 4-84 100-183 (437)
24 4fxv_A ELAV-like protein 1; RN 99.9 1.2E-21 4E-26 142.5 10.5 78 5-82 18-98 (99)
25 3pgw_S U1-70K; protein-RNA com 99.9 7E-22 2.4E-26 180.2 10.2 81 122-221 100-180 (437)
26 3lqv_A PRE-mRNA branch site pr 99.9 1.5E-21 5.1E-26 146.1 8.9 106 3-151 5-110 (115)
27 1x4a_A Splicing factor, argini 99.8 1.6E-20 5.6E-25 139.0 13.0 81 3-83 19-99 (109)
28 2hvz_A Splicing factor, argini 99.8 8.4E-21 2.9E-25 138.6 10.5 75 7-83 1-75 (101)
29 1sjq_A Polypyrimidine tract-bi 99.8 1.7E-20 5.7E-25 136.7 10.4 80 2-84 12-93 (105)
30 3s8s_A Histone-lysine N-methyl 99.8 2.2E-20 7.6E-25 138.4 11.0 81 3-83 3-86 (110)
31 2dgu_A Heterogeneous nuclear r 99.8 7.6E-20 2.6E-24 134.0 13.7 76 4-84 9-84 (103)
32 2lxi_A RNA-binding protein 10; 99.8 9E-21 3.1E-25 135.7 8.0 78 6-83 1-83 (91)
33 2fy1_A RNA-binding motif prote 99.8 5.7E-20 1.9E-24 137.6 12.6 83 1-83 2-86 (116)
34 2cqi_A Nucleolysin TIAR; RNA r 99.8 1E-19 3.5E-24 133.2 13.4 81 3-83 12-93 (103)
35 3r27_A HnRNP L, heterogeneous 99.8 3.1E-20 1.1E-24 134.0 10.3 77 4-83 19-97 (100)
36 1whw_A Hypothetical protein ri 99.8 9.6E-20 3.3E-24 132.4 12.9 81 4-84 6-89 (99)
37 2dnz_A Probable RNA-binding pr 99.8 9.7E-20 3.3E-24 131.3 12.6 81 3-83 2-85 (95)
38 2i2y_A Fusion protein consists 99.8 4.7E-20 1.6E-24 144.4 11.8 138 42-223 10-148 (150)
39 2lkz_A RNA-binding protein 5; 99.8 2.1E-20 7.2E-25 134.6 8.6 79 4-82 7-94 (95)
40 2x1f_A MRNA 3'-END-processing 99.8 6.6E-20 2.3E-24 132.5 11.1 79 5-83 1-82 (96)
41 2cqd_A RNA-binding region cont 99.8 2.2E-19 7.6E-24 134.4 14.2 79 4-83 15-96 (116)
42 2cqb_A Peptidyl-prolyl CIS-tra 99.8 6.3E-20 2.2E-24 134.1 11.0 81 4-84 10-93 (102)
43 2cpf_A RNA binding motif prote 99.8 5.5E-20 1.9E-24 133.4 10.5 81 3-83 2-88 (98)
44 2dgx_A KIAA0430 protein; RRM d 99.8 1.1E-19 3.7E-24 131.5 11.8 80 4-83 7-90 (96)
45 2wbr_A GW182, gawky, LD47780P; 99.8 5.1E-20 1.7E-24 128.3 9.6 75 4-81 5-79 (89)
46 2dgs_A DAZ-associated protein 99.8 1.5E-19 5E-24 131.5 12.5 80 4-84 8-90 (99)
47 1x4d_A Matrin 3; structural ge 99.8 3.9E-20 1.3E-24 134.6 9.4 77 4-83 13-92 (102)
48 2dnm_A SRP46 splicing factor; 99.8 7.6E-20 2.6E-24 133.9 10.9 80 4-83 11-93 (103)
49 2a3j_A U1 small nuclear ribonu 99.8 7.1E-20 2.4E-24 138.9 11.0 80 4-83 27-110 (127)
50 1x5t_A Splicing factor 3B subu 99.8 8E-20 2.8E-24 132.0 10.8 81 4-84 3-87 (96)
51 3mdf_A Peptidyl-prolyl CIS-tra 99.8 7.9E-20 2.7E-24 129.0 10.5 78 4-81 5-85 (85)
52 2cq3_A RNA-binding protein 9; 99.8 2.4E-19 8E-24 131.3 13.2 81 4-84 13-94 (103)
53 2dgo_A Cytotoxic granule-assoc 99.8 2.5E-19 8.5E-24 133.9 13.6 81 4-84 13-96 (115)
54 2d9p_A Polyadenylate-binding p 99.8 8.7E-20 3E-24 133.6 10.9 82 3-84 12-94 (103)
55 2e5h_A Zinc finger CCHC-type a 99.8 1.1E-19 3.7E-24 130.8 10.9 78 4-81 14-94 (94)
56 1nu4_A U1A RNA binding domain; 99.8 3.4E-20 1.1E-24 134.3 8.0 83 1-83 3-89 (97)
57 1x5u_A Splicing factor 3B subu 99.8 1.7E-19 6E-24 132.5 12.0 80 4-83 13-95 (105)
58 2ad9_A Polypyrimidine tract-bi 99.8 8.8E-20 3E-24 136.2 10.4 79 3-84 28-108 (119)
59 1wex_A Hypothetical protein (r 99.8 1.6E-19 5.4E-24 132.2 11.5 78 4-84 13-92 (104)
60 2do0_A HnRNP M, heterogeneous 99.8 3.4E-19 1.2E-23 132.9 13.6 80 4-83 13-94 (114)
61 2cq0_A Eukaryotic translation 99.8 9.9E-20 3.4E-24 133.3 10.4 81 4-84 13-96 (103)
62 1x5s_A Cold-inducible RNA-bind 99.8 1.3E-19 4.4E-24 132.5 11.0 80 4-83 10-92 (102)
63 3bs9_A Nucleolysin TIA-1 isofo 99.8 9.3E-20 3.2E-24 129.2 10.0 80 4-83 4-86 (87)
64 2do4_A Squamous cell carcinoma 99.8 1.5E-19 5.1E-24 131.6 11.2 80 4-83 15-96 (100)
65 3md1_A Nuclear and cytoplasmic 99.8 1.1E-19 3.9E-24 127.5 10.0 78 6-83 1-81 (83)
66 2cpz_A CUG triplet repeat RNA- 99.8 1.4E-19 4.7E-24 135.3 10.9 81 4-84 23-106 (115)
67 4a8x_A RNA-binding protein wit 99.8 1.6E-19 5.6E-24 128.2 10.7 80 4-83 2-85 (88)
68 2cq1_A PTB-like protein L; RRM 99.8 3E-19 1E-23 130.0 12.1 77 4-83 13-91 (101)
69 2cqc_A Arginine/serine-rich sp 99.8 1E-19 3.5E-24 131.1 9.6 79 4-82 13-94 (95)
70 2dnh_A Bruno-like 5, RNA bindi 99.8 1.9E-19 6.4E-24 132.3 11.1 81 4-84 13-98 (105)
71 1wi8_A EIF-4B, eukaryotic tran 99.8 2.4E-19 8.1E-24 131.5 11.5 79 3-83 12-94 (104)
72 2cph_A RNA binding motif prote 99.8 3.2E-19 1.1E-23 131.5 12.1 80 4-83 13-97 (107)
73 1x4h_A RNA-binding protein 28; 99.8 3.2E-19 1.1E-23 132.4 12.2 80 4-83 13-101 (111)
74 2dgt_A RNA-binding protein 30; 99.8 4.3E-19 1.5E-23 127.2 12.3 76 3-83 7-82 (92)
75 1x4c_A Splicing factor, argini 99.8 5.5E-19 1.9E-23 130.5 13.3 76 4-83 13-93 (108)
76 2ywk_A Putative RNA-binding pr 99.8 1.5E-19 5.1E-24 130.3 10.0 80 3-82 13-94 (95)
77 2dgv_A HnRNP M, heterogeneous 99.8 1.9E-19 6.6E-24 128.9 10.5 81 3-83 5-86 (92)
78 1h2v_Z 20 kDa nuclear CAP bind 99.8 2E-19 6.9E-24 141.8 11.4 81 4-84 37-120 (156)
79 2dnp_A RNA-binding protein 14; 99.8 3.9E-19 1.3E-23 126.9 11.8 75 4-83 7-81 (90)
80 2dnq_A RNA-binding protein 4B; 99.8 3.4E-19 1.2E-23 127.2 11.5 76 3-83 5-80 (90)
81 1why_A Hypothetical protein ri 99.8 3.2E-19 1.1E-23 129.2 11.3 77 4-83 15-93 (97)
82 2dgp_A Bruno-like 4, RNA bindi 99.8 3.3E-19 1.1E-23 131.2 11.5 81 3-83 10-96 (106)
83 1p27_B RNA-binding protein 8A; 99.8 1.5E-19 5.1E-24 133.1 9.5 80 4-83 21-103 (106)
84 2div_A TRNA selenocysteine ass 99.8 1.6E-19 5.6E-24 131.2 9.3 82 2-83 5-94 (99)
85 1s79_A Lupus LA protein; RRM, 99.8 1.8E-19 6.1E-24 131.8 9.0 78 4-82 9-88 (103)
86 1oo0_B CG8781-PA, drosophila Y 99.8 3.7E-19 1.3E-23 131.8 10.4 80 4-83 24-106 (110)
87 2cpe_A RNA-binding protein EWS 99.8 4.6E-19 1.6E-23 132.0 10.9 80 4-83 13-103 (113)
88 2cpi_A CCR4-NOT transcription 99.8 1.9E-19 6.4E-24 133.7 8.7 80 4-83 13-101 (111)
89 2kxn_B Transformer-2 protein h 99.8 2.3E-19 7.9E-24 136.8 9.3 80 4-83 44-126 (129)
90 2dng_A Eukaryotic translation 99.8 5.5E-19 1.9E-23 129.4 10.9 79 3-83 12-93 (103)
91 3ulh_A THO complex subunit 4; 99.8 3.6E-19 1.2E-23 131.2 10.0 78 4-81 27-106 (107)
92 1x4g_A Nucleolysin TIAR; struc 99.8 9.5E-19 3.3E-23 129.4 12.2 77 4-83 23-99 (109)
93 2err_A Ataxin-2-binding protei 99.8 3.2E-19 1.1E-23 132.0 9.6 80 4-83 27-107 (109)
94 2jvr_A Nucleolar protein 3; RN 99.8 3.8E-19 1.3E-23 131.5 10.0 79 4-83 26-105 (111)
95 2khc_A Testis-specific RNP-typ 99.8 3.1E-19 1.1E-23 134.0 9.6 78 4-81 38-118 (118)
96 3p5t_L Cleavage and polyadenyl 99.8 4.9E-20 1.7E-24 131.6 4.9 77 7-83 2-83 (90)
97 3ns6_A Eukaryotic translation 99.8 1.9E-19 6.5E-24 131.1 7.9 79 4-82 4-92 (100)
98 2la6_A RNA-binding protein FUS 99.8 3.4E-19 1.1E-23 129.5 9.1 78 4-81 11-99 (99)
99 2ytc_A PRE-mRNA-splicing facto 99.8 5E-19 1.7E-23 124.8 9.6 75 4-81 10-85 (85)
100 2cq2_A Hypothetical protein LO 99.8 6.3E-19 2.2E-23 130.2 10.5 79 2-83 21-106 (114)
101 2jrs_A RNA-binding protein 39; 99.8 3.5E-19 1.2E-23 131.6 9.1 80 4-83 24-106 (108)
102 2cpj_A Non-POU domain-containi 99.8 6.5E-19 2.2E-23 128.0 10.4 77 4-83 13-89 (99)
103 1u6f_A Tcubp1, RNA-binding pro 99.8 1.3E-18 4.4E-23 134.4 12.7 80 4-83 40-122 (139)
104 1x4f_A Matrin 3; structural ge 99.8 1.2E-19 4.2E-24 133.9 6.5 78 3-83 22-102 (112)
105 2dhg_A TRNA selenocysteine ass 99.8 6.7E-19 2.3E-23 129.1 10.2 82 3-84 6-91 (104)
106 3s7r_A Heterogeneous nuclear r 99.8 8.3E-19 2.8E-23 124.3 10.3 77 3-80 8-87 (87)
107 2xnq_A Nuclear polyadenylated 99.8 1.2E-18 4.1E-23 126.1 11.3 75 4-83 20-95 (97)
108 3ucg_A Polyadenylate-binding p 99.8 9.6E-19 3.3E-23 124.5 10.6 78 5-83 5-85 (89)
109 3ex7_B RNA-binding protein 8A; 99.8 5.8E-19 2E-23 134.0 10.1 80 4-83 20-102 (126)
110 2dis_A Unnamed protein product 99.8 1.6E-18 5.5E-23 128.2 12.2 82 3-84 5-93 (109)
111 2nlw_A Eukaryotic translation 99.8 7.4E-19 2.5E-23 129.2 9.9 80 4-83 13-100 (105)
112 2cpx_A Hypothetical protein FL 99.8 7.1E-19 2.4E-23 131.3 9.8 80 4-84 23-106 (115)
113 2cpd_A Apobec-1 stimulating pr 99.8 2.4E-18 8.3E-23 125.0 12.4 75 4-83 13-89 (99)
114 2jvo_A Nucleolar protein 3; nu 99.8 9E-19 3.1E-23 129.3 10.0 75 4-83 29-103 (108)
115 2cqh_A IGF-II mRNA-binding pro 99.8 7.1E-19 2.4E-23 126.3 8.9 77 3-83 5-83 (93)
116 2fc9_A NCL protein; structure 99.8 1E-18 3.6E-23 127.4 10.0 79 4-83 13-91 (101)
117 2dh8_A DAZ-associated protein 99.8 7.6E-19 2.6E-23 129.0 9.2 80 3-83 13-95 (105)
118 2krb_A Eukaryotic translation 99.8 3.9E-19 1.3E-23 124.3 7.2 72 6-77 1-80 (81)
119 2rs2_A Musashi-1, RNA-binding 99.8 1.8E-18 6.3E-23 127.9 11.3 79 4-83 23-104 (109)
120 2kvi_A Nuclear polyadenylated 99.8 6.7E-19 2.3E-23 127.2 8.5 75 4-83 8-83 (96)
121 1whx_A Hypothetical protein ri 99.8 6E-19 2E-23 131.0 8.4 77 4-83 8-84 (111)
122 3n9u_C Cleavage and polyadenyl 99.8 9.7E-19 3.3E-23 137.6 10.0 79 5-83 54-137 (156)
123 2la4_A Nuclear and cytoplasmic 99.8 7E-19 2.4E-23 128.3 8.6 76 4-82 25-100 (101)
124 2kt5_A RNA and export factor-b 99.8 2.7E-18 9.2E-23 130.0 12.0 80 4-83 33-114 (124)
125 1x4e_A RNA binding motif, sing 99.8 1.8E-19 6E-24 127.2 5.0 79 3-81 2-83 (85)
126 2e5j_A Methenyltetrahydrofolat 99.8 9.4E-19 3.2E-23 126.7 8.8 78 4-83 17-94 (97)
127 1wf1_A RNA-binding protein RAL 99.8 1.8E-18 6.3E-23 128.1 10.3 74 5-83 26-100 (110)
128 2ek1_A RNA-binding protein 12; 99.8 3.8E-19 1.3E-23 128.2 6.4 78 4-81 13-93 (95)
129 2fc8_A NCL protein; structure 99.8 1.6E-18 5.4E-23 126.6 9.7 80 4-83 13-92 (102)
130 1p1t_A Cleavage stimulation fa 99.8 5.2E-19 1.8E-23 129.7 7.1 80 4-83 6-88 (104)
131 2cqp_A RNA-binding protein 12; 99.8 5.6E-19 1.9E-23 128.1 7.2 80 4-83 13-95 (98)
132 2cq4_A RNA binding motif prote 99.8 1.6E-18 5.6E-23 129.2 9.9 78 5-83 24-104 (114)
133 2kn4_A Immunoglobulin G-bindin 99.8 3.3E-18 1.1E-22 135.0 12.1 80 4-83 68-150 (158)
134 1fjc_A Nucleolin RBD2, protein 99.8 7.3E-19 2.5E-23 126.9 7.5 78 4-83 14-91 (96)
135 2m2b_A RNA-binding protein 10; 99.8 7.6E-19 2.6E-23 134.4 7.8 80 3-83 20-108 (131)
136 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 2.7E-18 9.1E-23 132.7 10.7 77 4-80 61-140 (140)
137 2mss_A Protein (musashi1); RNA 99.8 7.8E-19 2.7E-23 120.8 6.8 72 8-80 1-75 (75)
138 2dgw_A Probable RNA-binding pr 99.8 3.1E-18 1E-22 122.4 10.1 78 4-83 8-87 (91)
139 2cqg_A TDP-43, TAR DNA-binding 99.8 6E-18 2.1E-22 123.8 11.9 78 4-83 13-93 (103)
140 3beg_B Splicing factor, argini 99.8 5.7E-19 2E-23 131.9 6.5 75 121-221 13-92 (115)
141 2lea_A Serine/arginine-rich sp 99.8 1.2E-18 4.1E-23 133.9 8.3 80 4-83 45-127 (135)
142 2j76_E EIF-4B, EIF4B, eukaryot 99.8 8.3E-19 2.8E-23 127.7 6.9 78 4-83 17-98 (100)
143 3egn_A RNA-binding protein 40; 99.8 1.2E-18 4.1E-23 135.3 8.2 80 4-83 43-130 (143)
144 1x4b_A Heterogeneous nuclear r 99.8 3.6E-18 1.2E-22 127.7 10.5 78 5-83 26-106 (116)
145 2lea_A Serine/arginine-rich sp 99.8 2.2E-18 7.6E-23 132.4 9.3 125 46-225 5-129 (135)
146 2jwn_A Embryonic polyadenylate 99.8 4.8E-18 1.6E-22 128.6 10.8 78 5-83 35-115 (124)
147 1rk8_A CG8781-PA, CG8781-PA pr 99.8 2.8E-18 9.4E-23 136.5 9.8 81 4-84 70-153 (165)
148 4fxv_A ELAV-like protein 1; RN 99.8 3.8E-18 1.3E-22 123.9 9.6 81 123-222 18-98 (99)
149 2ki2_A SS-DNA binding protein 99.8 5.5E-19 1.9E-23 126.0 5.0 76 7-83 2-80 (90)
150 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.1E-18 3.9E-23 120.6 6.5 73 7-80 1-76 (77)
151 2cpy_A RNA-binding protein 12; 99.8 1.9E-18 6.4E-23 128.9 8.0 79 4-83 13-94 (114)
152 1wg1_A KIAA1579 protein, homol 99.8 2.3E-18 7.8E-23 122.3 8.1 77 3-83 2-78 (88)
153 1wg5_A Heterogeneous nuclear r 99.8 4.6E-18 1.6E-22 124.7 9.9 79 4-83 13-94 (104)
154 1x5p_A Negative elongation fac 99.7 1.3E-17 4.3E-22 120.7 11.8 75 4-83 13-87 (97)
155 1x5o_A RNA binding motif, sing 99.7 4.1E-18 1.4E-22 127.0 9.4 80 4-83 23-112 (114)
156 2db1_A Heterogeneous nuclear r 99.7 1.6E-18 5.5E-23 130.1 7.1 79 4-83 15-98 (118)
157 2i2y_A Fusion protein consists 99.7 4.4E-18 1.5E-22 133.2 9.8 78 4-83 71-148 (150)
158 3beg_B Splicing factor, argini 99.7 5.1E-18 1.7E-22 126.7 9.7 76 4-83 14-94 (115)
159 1wez_A HnRNP H', FTP-3, hetero 99.7 3.2E-18 1.1E-22 125.0 8.3 78 4-83 13-92 (102)
160 1x4c_A Splicing factor, argini 99.7 2.1E-17 7.1E-22 122.0 12.7 82 119-222 10-92 (108)
161 1iqt_A AUF1, heterogeneous nuc 99.7 1.7E-18 5.9E-23 119.0 6.1 72 8-80 1-75 (75)
162 1fj7_A Nucleolin RBD1, protein 99.7 1.2E-18 4.1E-23 127.0 5.4 78 4-83 15-95 (101)
163 2diu_A KIAA0430 protein; struc 99.7 7.3E-18 2.5E-22 118.5 9.0 73 4-83 6-84 (96)
164 2e44_A Insulin-like growth fac 99.7 9.1E-18 3.1E-22 121.2 9.8 79 4-83 13-92 (96)
165 1sjr_A Polypyrimidine tract-bi 99.7 1.5E-17 5E-22 130.3 11.7 77 7-84 47-125 (164)
166 2e5g_A U6 snRNA-specific termi 99.7 1.4E-17 4.7E-22 119.8 10.7 77 4-83 6-82 (94)
167 2hgl_A HNRPF protein, heteroge 99.7 2.5E-18 8.6E-23 131.8 7.0 79 4-83 42-125 (136)
168 2dnn_A RNA-binding protein 12; 99.7 1.1E-17 3.9E-22 123.3 9.8 75 6-82 16-92 (109)
169 2f3j_A RNA and export factor b 99.7 9.2E-18 3.2E-22 134.8 9.9 80 4-83 86-167 (177)
170 3zzy_A Polypyrimidine tract-bi 99.7 2.6E-17 8.9E-22 124.3 11.8 75 8-84 30-107 (130)
171 2hzc_A Splicing factor U2AF 65 99.7 1.4E-17 4.7E-22 117.9 9.2 73 3-79 3-86 (87)
172 2cpz_A CUG triplet repeat RNA- 99.7 7.6E-17 2.6E-21 120.3 13.8 87 120-225 21-107 (115)
173 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.1E-17 3.9E-22 132.9 9.7 141 50-224 11-153 (165)
174 2lcw_A RNA-binding protein FUS 99.6 2.8E-19 9.6E-24 133.8 0.0 80 4-83 5-95 (116)
175 2lmi_A GRSF-1, G-rich sequence 99.7 3.8E-18 1.3E-22 125.8 5.7 79 4-83 9-92 (107)
176 1wel_A RNA-binding protein 12; 99.7 7.1E-18 2.4E-22 127.7 7.2 79 4-83 23-104 (124)
177 3q2s_C Cleavage and polyadenyl 99.7 9.6E-18 3.3E-22 140.2 8.6 78 5-82 67-149 (229)
178 2e5i_A Heterogeneous nuclear r 99.7 5.9E-17 2E-21 121.8 11.6 77 5-84 22-103 (124)
179 3ex7_B RNA-binding protein 8A; 99.7 2.4E-17 8.2E-22 125.0 9.5 85 121-224 19-103 (126)
180 3d2w_A TAR DNA-binding protein 99.7 3.8E-17 1.3E-21 116.2 9.9 74 4-83 9-84 (89)
181 2hgn_A Heterogeneous nuclear r 99.7 4.1E-18 1.4E-22 131.0 5.1 78 4-83 44-123 (139)
182 2dgo_A Cytotoxic granule-assoc 99.7 2.2E-16 7.5E-21 117.7 14.1 90 118-226 9-98 (115)
183 1wf0_A TDP-43, TAR DNA-binding 99.7 1.7E-17 5.7E-22 117.8 7.6 77 3-83 2-78 (88)
184 2hgm_A HNRPF protein, heteroge 99.7 1.7E-17 5.9E-22 125.2 7.9 77 4-82 40-120 (126)
185 2dha_A FLJ20171 protein; RRM d 99.7 5.1E-18 1.8E-22 127.8 4.9 78 4-82 21-104 (123)
186 2fy1_A RNA-binding motif prote 99.7 1.8E-16 6.2E-21 118.4 13.3 84 122-225 5-88 (116)
187 3s8s_A Histone-lysine N-methyl 99.7 6.1E-17 2.1E-21 119.8 9.8 81 123-222 5-85 (110)
188 2cq0_A Eukaryotic translation 99.7 1E-16 3.6E-21 117.1 10.9 88 120-226 11-98 (103)
189 2e5h_A Zinc finger CCHC-type a 99.7 8.5E-17 2.9E-21 115.5 10.1 83 120-221 12-94 (94)
190 2dnm_A SRP46 splicing factor; 99.7 1.2E-16 4.1E-21 116.8 10.9 88 118-224 7-94 (103)
191 2xs2_A Deleted in azoospermia- 99.7 2.4E-17 8.1E-22 120.3 6.6 78 4-83 7-86 (102)
192 1x5s_A Cold-inducible RNA-bind 99.7 2.3E-16 7.8E-21 115.0 11.6 85 122-225 10-94 (102)
193 2bz2_A Negative elongation fac 99.7 7.8E-17 2.7E-21 121.3 9.1 75 4-83 37-111 (121)
194 1x4a_A Splicing factor, argini 99.7 4.3E-16 1.5E-20 115.0 13.0 87 117-225 15-101 (109)
195 2lxi_A RNA-binding protein 10; 99.7 4.7E-17 1.6E-21 116.2 7.4 82 125-225 2-85 (91)
196 2pe8_A Splicing factor 45; RRM 99.7 1.9E-16 6.7E-21 115.9 10.8 80 3-82 5-93 (105)
197 2cqc_A Arginine/serine-rich sp 99.7 2.4E-16 8.1E-21 113.3 11.0 84 120-222 11-94 (95)
198 1x5u_A Splicing factor 3B subu 99.7 3.7E-16 1.2E-20 114.6 12.2 86 120-224 11-96 (105)
199 2cph_A RNA binding motif prote 99.7 4.1E-16 1.4E-20 114.7 12.3 89 118-225 9-99 (107)
200 1x4h_A RNA-binding protein 28; 99.7 3.9E-16 1.3E-20 115.6 12.3 88 119-225 10-103 (111)
201 4f02_A Polyadenylate-binding p 99.7 9.1E-17 3.1E-21 133.0 9.5 79 5-83 102-181 (213)
202 2do0_A HnRNP M, heterogeneous 99.7 7.5E-16 2.6E-20 114.6 13.6 85 121-225 12-96 (114)
203 2cqb_A Peptidyl-prolyl CIS-tra 99.7 2.4E-16 8.2E-21 114.9 10.4 85 122-225 10-94 (102)
204 2dgs_A DAZ-associated protein 99.7 4E-16 1.4E-20 113.1 11.5 85 121-225 7-91 (99)
205 3md3_A Nuclear and cytoplasmic 99.7 1.9E-16 6.4E-21 125.2 10.6 78 4-81 85-165 (166)
206 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.7E-16 6E-21 112.1 9.3 83 122-223 4-86 (87)
207 2do4_A Squamous cell carcinoma 99.7 5.9E-16 2E-20 112.4 12.3 85 121-225 14-98 (100)
208 2dgp_A Bruno-like 4, RNA bindi 99.7 3.8E-16 1.3E-20 114.7 11.4 87 120-225 9-98 (106)
209 2dnz_A Probable RNA-binding pr 99.7 4.2E-16 1.5E-20 112.0 11.5 84 123-225 4-87 (95)
210 1wi8_A EIF-4B, eukaryotic tran 99.7 2.8E-16 9.6E-21 115.0 10.4 88 118-226 9-97 (104)
211 2dng_A Eukaryotic translation 99.7 4.4E-16 1.5E-20 113.8 11.4 87 118-225 9-95 (103)
212 2dnl_A Cytoplasmic polyadenyla 99.7 1.1E-16 3.9E-21 119.2 8.4 75 4-81 6-86 (114)
213 1whw_A Hypothetical protein ri 99.7 4.9E-16 1.7E-20 112.6 11.5 86 122-226 6-91 (99)
214 2kxn_B Transformer-2 protein h 99.7 3.4E-16 1.1E-20 119.2 10.9 85 121-224 43-127 (129)
215 1x5t_A Splicing factor 3B subu 99.7 2.5E-16 8.6E-21 113.5 9.6 85 123-226 4-89 (96)
216 3p5t_L Cleavage and polyadenyl 99.7 1.4E-16 4.8E-21 113.5 8.0 81 125-224 2-84 (90)
217 2lkz_A RNA-binding protein 5; 99.7 1.2E-16 4.2E-21 114.8 7.5 85 123-222 8-94 (95)
218 2dh8_A DAZ-associated protein 99.7 6.8E-16 2.3E-20 113.1 11.7 86 119-224 11-96 (105)
219 2jvr_A Nucleolar protein 3; RN 99.7 1.9E-16 6.3E-21 117.0 8.5 82 121-225 25-107 (111)
220 2qfj_A FBP-interacting repress 99.7 3.7E-16 1.3E-20 129.1 11.3 80 4-83 123-205 (216)
221 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.2E-15 4.2E-20 111.4 12.7 86 119-225 10-95 (103)
222 2la6_A RNA-binding protein FUS 99.7 6.9E-16 2.4E-20 111.9 11.2 85 118-221 7-99 (99)
223 2d9p_A Polyadenylate-binding p 99.7 8.2E-16 2.8E-20 112.3 11.6 86 119-225 10-95 (103)
224 2dnh_A Bruno-like 5, RNA bindi 99.7 1.2E-15 4.1E-20 111.8 12.4 85 122-226 13-100 (105)
225 2cqd_A RNA-binding region cont 99.7 8.4E-16 2.9E-20 114.7 11.7 85 118-222 11-95 (116)
226 3mdf_A Peptidyl-prolyl CIS-tra 99.7 3.6E-16 1.2E-20 110.0 9.1 81 122-221 5-85 (85)
227 3u1l_A PRE-mRNA-splicing facto 99.7 2.1E-16 7.3E-21 131.8 9.1 77 4-83 132-229 (240)
228 2cqp_A RNA-binding protein 12; 99.7 2.3E-16 7.9E-21 114.1 8.1 84 121-223 12-95 (98)
229 2ywk_A Putative RNA-binding pr 99.7 4.8E-16 1.6E-20 111.7 9.8 83 119-221 11-93 (95)
230 2cq3_A RNA-binding protein 9; 99.7 1.3E-15 4.4E-20 111.3 12.2 86 119-225 10-95 (103)
231 3md1_A Nuclear and cytoplasmic 99.7 5.6E-16 1.9E-20 108.5 9.8 80 125-223 2-81 (83)
232 4f25_A Polyadenylate-binding p 99.7 4.3E-16 1.5E-20 116.2 9.7 79 124-223 5-83 (115)
233 2cpe_A RNA-binding protein EWS 99.7 8.5E-16 2.9E-20 114.2 11.2 86 121-225 12-105 (113)
234 2div_A TRNA selenocysteine ass 99.7 9.6E-16 3.3E-20 111.0 11.0 83 122-223 7-94 (99)
235 2g4b_A Splicing factor U2AF 65 99.7 3.8E-16 1.3E-20 124.4 9.7 77 5-81 93-172 (172)
236 1p27_B RNA-binding protein 8A; 99.6 7.8E-16 2.7E-20 113.0 10.3 83 122-223 21-103 (106)
237 2yh0_A Splicing factor U2AF 65 99.6 6.4E-16 2.2E-20 125.9 10.8 80 4-83 112-194 (198)
238 1fje_B Nucleolin RBD12, protei 99.6 3.7E-16 1.3E-20 125.0 9.1 78 4-83 97-174 (175)
239 2dit_A HIV TAT specific factor 99.6 7.2E-16 2.5E-20 114.4 10.0 79 4-83 13-102 (112)
240 2x1f_A MRNA 3'-END-processing 99.6 6.5E-16 2.2E-20 111.3 9.4 81 124-223 2-82 (96)
241 2jrs_A RNA-binding protein 39; 99.6 1.2E-15 4.2E-20 112.4 11.0 87 118-223 20-106 (108)
242 2cjk_A Nuclear polyadenylated 99.6 2.3E-16 7.9E-21 125.1 7.5 78 5-83 86-166 (167)
243 1u6f_A Tcubp1, RNA-binding pro 99.6 2.6E-15 8.8E-20 115.7 13.2 88 119-225 37-124 (139)
244 2j8a_A Histone-lysine N-methyl 99.6 4.1E-16 1.4E-20 115.9 7.9 77 7-83 3-96 (136)
245 1l3k_A Heterogeneous nuclear r 99.6 7.6E-16 2.6E-20 125.3 10.2 79 5-84 103-184 (196)
246 3ns6_A Eukaryotic translation 99.6 3E-16 1E-20 114.1 6.9 80 123-221 5-91 (100)
247 2cpf_A RNA binding motif prote 99.6 1.4E-15 4.6E-20 110.0 10.2 86 123-224 4-89 (98)
248 2m2b_A RNA-binding protein 10; 99.6 1.4E-15 5E-20 116.0 10.6 82 122-223 21-108 (131)
249 3nmr_A Cugbp ELAV-like family 99.6 8.1E-16 2.8E-20 122.7 9.4 77 5-81 94-175 (175)
250 2khc_A Testis-specific RNP-typ 99.6 2.1E-15 7E-20 112.9 11.1 83 120-221 36-118 (118)
251 4a8x_A RNA-binding protein wit 99.6 1.2E-15 4E-20 108.0 9.0 83 123-224 3-86 (88)
252 1oo0_B CG8781-PA, drosophila Y 99.6 1.2E-15 4E-20 112.9 9.3 85 121-224 23-107 (110)
253 2voo_A Lupus LA protein; RNA-b 99.6 1.1E-15 3.8E-20 124.4 10.0 77 6-83 109-187 (193)
254 2hgl_A HNRPF protein, heteroge 99.6 7.7E-16 2.6E-20 117.9 8.3 85 116-221 36-123 (136)
255 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 2.2E-15 7.6E-20 116.1 11.0 82 120-220 59-140 (140)
256 1b7f_A Protein (SXL-lethal pro 99.6 1.2E-15 4.2E-20 120.8 9.8 77 4-80 87-168 (168)
257 2dhg_A TRNA selenocysteine ass 99.6 5.4E-15 1.8E-19 108.1 12.3 84 122-225 7-92 (104)
258 2cqg_A TDP-43, TAR DNA-binding 99.6 6.1E-15 2.1E-19 107.6 12.6 85 119-224 10-94 (103)
259 2dgv_A HnRNP M, heterogeneous 99.6 3.3E-15 1.1E-19 106.7 10.9 82 122-224 6-87 (92)
260 1wg5_A Heterogeneous nuclear r 99.6 1.7E-15 5.8E-20 110.8 9.5 83 119-222 10-93 (104)
261 2dgx_A KIAA0430 protein; RRM d 99.6 2.4E-15 8.1E-20 108.4 10.0 82 122-225 7-92 (96)
262 1h2v_Z 20 kDa nuclear CAP bind 99.6 3E-15 1E-19 117.7 11.2 84 122-224 37-120 (156)
263 2dgw_A Probable RNA-binding pr 99.6 4E-15 1.4E-19 106.0 10.9 82 121-224 7-88 (91)
264 3v4m_A Splicing factor U2AF 65 99.6 2E-15 7E-20 110.5 9.5 80 3-82 2-96 (105)
265 2hgn_A Heterogeneous nuclear r 99.6 4.8E-16 1.6E-20 119.4 6.4 83 120-224 42-124 (139)
266 1wel_A RNA-binding protein 12; 99.6 9.9E-16 3.4E-20 115.8 7.9 83 119-221 20-102 (124)
267 3s7r_A Heterogeneous nuclear r 99.6 2.8E-15 9.4E-20 105.9 9.6 80 121-220 8-87 (87)
268 3ucg_A Polyadenylate-binding p 99.6 3.2E-15 1.1E-19 106.0 10.0 79 124-222 6-84 (89)
269 2mss_A Protein (musashi1); RNA 99.6 1.4E-15 4.7E-20 104.4 7.8 75 126-220 1-75 (75)
270 2ek1_A RNA-binding protein 12; 99.6 4.9E-16 1.7E-20 111.7 5.7 80 123-221 14-93 (95)
271 2e5j_A Methenyltetrahydrofolat 99.6 6.4E-15 2.2E-19 106.3 11.6 81 120-224 15-95 (97)
272 1p1t_A Cleavage stimulation fa 99.6 1.7E-15 5.7E-20 110.8 8.5 83 123-224 7-89 (104)
273 3n9u_C Cleavage and polyadenyl 99.6 2.4E-15 8E-20 118.2 9.9 80 123-221 54-135 (156)
274 1fxl_A Paraneoplastic encephal 99.6 2.3E-15 8E-20 119.0 9.8 76 5-80 87-167 (167)
275 3pgw_A U1-A; protein-RNA compl 99.6 2.7E-15 9.1E-20 129.3 10.9 76 4-81 205-281 (282)
276 2db1_A Heterogeneous nuclear r 99.6 1.6E-15 5.6E-20 113.6 8.3 83 118-221 11-96 (118)
277 3ulh_A THO complex subunit 4; 99.6 3.2E-15 1.1E-19 109.9 9.7 83 119-221 24-106 (107)
278 1wez_A HnRNP H', FTP-3, hetero 99.6 4.6E-15 1.6E-19 108.1 10.3 81 121-223 12-92 (102)
279 1x4e_A RNA binding motif, sing 99.6 7.5E-16 2.6E-20 108.4 5.8 79 123-220 4-82 (85)
280 1x4b_A Heterogeneous nuclear r 99.6 6.8E-15 2.3E-19 109.8 10.9 84 122-225 25-108 (116)
281 1uaw_A Mouse-musashi-1; RNP-ty 99.6 2.1E-15 7.2E-20 103.9 7.4 76 125-220 1-76 (77)
282 1qm9_A Polypyrimidine tract-bi 99.6 2.7E-15 9.1E-20 122.4 9.1 78 4-83 118-197 (198)
283 1x5o_A RNA binding motif, sing 99.6 1.4E-14 4.9E-19 107.6 12.3 87 120-222 21-111 (114)
284 2dnn_A RNA-binding protein 12; 99.6 3.7E-15 1.3E-19 109.8 8.7 81 119-221 11-91 (109)
285 2adc_A Polypyrimidine tract-bi 99.6 5.5E-15 1.9E-19 123.6 10.8 78 4-83 149-228 (229)
286 2jwn_A Embryonic polyadenylate 99.6 5.1E-15 1.8E-19 111.8 9.5 81 123-223 35-115 (124)
287 2cq4_A RNA binding motif prote 99.6 4.7E-15 1.6E-19 110.3 9.1 80 122-221 23-102 (114)
288 1s79_A Lupus LA protein; RRM, 99.6 6.9E-15 2.4E-19 107.3 9.7 78 122-220 9-86 (103)
289 2fc9_A NCL protein; structure 99.6 8.4E-15 2.9E-19 106.5 10.1 81 121-224 12-92 (101)
290 2wbr_A GW182, gawky, LD47780P; 99.6 3.5E-15 1.2E-19 103.9 7.6 73 124-221 7-79 (89)
291 2cpi_A CCR4-NOT transcription 99.6 3.7E-15 1.3E-19 110.4 8.2 88 121-224 12-102 (111)
292 2krb_A Eukaryotic translation 99.6 2.9E-15 9.8E-20 104.4 7.1 72 125-217 2-80 (81)
293 2a3j_A U1 small nuclear ribonu 99.6 9.9E-15 3.4E-19 110.4 10.3 81 121-223 26-110 (127)
294 3tyt_A Heterogeneous nuclear r 99.6 3.4E-15 1.2E-19 122.7 8.4 77 4-80 121-204 (205)
295 2dgu_A Heterogeneous nuclear r 99.6 2E-14 6.8E-19 104.9 11.6 77 122-225 9-85 (103)
296 2rs2_A Musashi-1, RNA-binding 99.6 6.4E-15 2.2E-19 108.7 9.1 84 121-224 22-105 (109)
297 2nlw_A Eukaryotic translation 99.6 7.3E-15 2.5E-19 107.6 9.3 80 122-222 13-99 (105)
298 2dis_A Unnamed protein product 99.6 1.4E-14 4.9E-19 106.7 10.9 83 123-224 7-93 (109)
299 2err_A Ataxin-2-binding protei 99.6 6.9E-15 2.3E-19 108.5 9.1 81 121-222 26-106 (109)
300 2fc8_A NCL protein; structure 99.6 1.5E-14 5.1E-19 105.3 10.8 85 119-225 10-94 (102)
301 2kt5_A RNA and export factor-b 99.6 5.8E-14 2E-18 106.0 14.4 83 120-222 31-113 (124)
302 1sjq_A Polypyrimidine tract-bi 99.6 1.2E-14 4.2E-19 105.6 10.1 78 122-224 14-93 (105)
303 2dnq_A RNA-binding protein 4B; 99.6 2E-14 6.7E-19 102.2 10.7 78 122-226 6-83 (90)
304 2ki2_A SS-DNA binding protein 99.6 2.6E-15 8.8E-20 106.8 6.0 79 125-223 2-80 (90)
305 2hvz_A Splicing factor, argini 99.6 1.6E-14 5.4E-19 105.0 10.3 76 125-224 1-76 (101)
306 2j76_E EIF-4B, EIF4B, eukaryot 99.6 2.8E-15 9.7E-20 108.9 6.2 85 119-223 14-98 (100)
307 2cpy_A RNA-binding protein 12; 99.6 6E-15 2.1E-19 109.7 8.1 81 121-222 12-93 (114)
308 2cpd_A Apobec-1 stimulating pr 99.6 3.4E-14 1.2E-18 102.8 11.8 78 120-224 11-90 (99)
309 2dgt_A RNA-binding protein 30; 99.6 2.3E-14 7.7E-19 102.3 10.5 77 121-224 7-83 (92)
310 1fj7_A Nucleolin RBD1, protein 99.6 3.3E-15 1.1E-19 108.6 6.2 82 122-224 15-96 (101)
311 2dnp_A RNA-binding protein 14; 99.6 1.9E-14 6.5E-19 102.3 10.0 77 122-225 7-83 (90)
312 1iqt_A AUF1, heterogeneous nuc 99.6 6E-15 2.1E-19 101.1 7.0 75 126-220 1-75 (75)
313 1x4d_A Matrin 3; structural ge 99.6 8.4E-15 2.9E-19 106.3 8.0 76 122-222 13-91 (102)
314 3q2s_C Cleavage and polyadenyl 99.6 9.8E-15 3.3E-19 121.9 9.0 80 123-221 67-148 (229)
315 2cpx_A Hypothetical protein FL 99.5 6.2E-15 2.1E-19 109.8 6.8 81 122-225 23-107 (115)
316 2cpj_A Non-POU domain-containi 99.5 4.5E-14 1.5E-18 102.2 11.2 80 121-225 12-91 (99)
317 1nu4_A U1A RNA binding domain; 99.5 1.1E-14 3.7E-19 105.0 7.6 82 121-224 5-90 (97)
318 1wf1_A RNA-binding protein RAL 99.5 8.8E-14 3E-18 102.7 12.7 76 121-223 24-100 (110)
319 2e44_A Insulin-like growth fac 99.5 3.9E-14 1.3E-18 101.9 10.5 83 118-223 9-92 (96)
320 1wex_A Hypothetical protein (r 99.5 5.1E-14 1.8E-18 102.7 11.2 77 122-223 13-91 (104)
321 2d9o_A DNAJ (HSP40) homolog, s 99.5 7E-14 2.4E-18 101.1 11.7 76 4-83 8-90 (100)
322 2cqh_A IGF-II mRNA-binding pro 99.5 2.9E-14 9.8E-19 102.0 9.4 78 123-226 7-86 (93)
323 1jmt_A Splicing factor U2AF 35 99.5 3.8E-15 1.3E-19 108.9 4.9 70 11-80 20-103 (104)
324 2dha_A FLJ20171 protein; RRM d 99.5 4.2E-15 1.4E-19 111.8 5.2 80 121-221 20-103 (123)
325 2hgm_A HNRPF protein, heteroge 99.5 1.2E-14 4.1E-19 109.6 7.7 80 120-221 38-119 (126)
326 1why_A Hypothetical protein ri 99.5 8.7E-14 3E-18 100.3 11.9 81 122-225 15-95 (97)
327 3ue2_A Poly(U)-binding-splicin 99.5 5.9E-15 2E-19 110.1 5.8 78 4-81 18-107 (118)
328 3r27_A HnRNP L, heterogeneous 99.5 2.9E-14 1E-18 102.6 9.2 76 122-222 19-96 (100)
329 2lmi_A GRSF-1, G-rich sequence 99.5 1E-14 3.5E-19 107.2 6.7 80 121-221 8-90 (107)
330 3tht_A Alkylated DNA repair pr 99.5 2.3E-14 7.9E-19 125.7 10.0 77 2-81 14-97 (345)
331 2jvo_A Nucleolar protein 3; nu 99.5 3.8E-14 1.3E-18 104.3 9.5 79 121-226 28-106 (108)
332 2ytc_A PRE-mRNA-splicing facto 99.5 5.5E-14 1.9E-18 98.7 9.7 76 121-221 9-85 (85)
333 2ad9_A Polypyrimidine tract-bi 99.5 4.3E-14 1.5E-18 105.3 9.6 79 121-224 28-108 (119)
334 2cq1_A PTB-like protein L; RRM 99.5 5.9E-14 2E-18 101.8 10.0 78 121-223 12-91 (101)
335 2kvi_A Nuclear polyadenylated 99.5 2.8E-14 9.6E-19 102.7 8.0 76 122-224 8-84 (96)
336 3lqv_A PRE-mRNA branch site pr 99.5 6E-14 2.1E-18 104.4 9.9 79 122-222 6-84 (115)
337 1sjr_A Polypyrimidine tract-bi 99.5 9.7E-14 3.3E-18 108.6 11.2 82 121-223 43-124 (164)
338 1x4f_A Matrin 3; structural ge 99.5 4.7E-14 1.6E-18 103.9 8.8 78 120-222 21-101 (112)
339 1x4g_A Nucleolysin TIAR; struc 99.5 1.1E-13 3.7E-18 102.0 10.9 79 122-225 23-101 (109)
340 2xnq_A Nuclear polyadenylated 99.5 8.6E-14 2.9E-18 100.4 9.3 76 120-222 18-94 (97)
341 2lcw_A RNA-binding protein FUS 99.2 1.6E-15 5.4E-20 113.3 0.0 86 122-226 5-98 (116)
342 2la4_A Nuclear and cytoplasmic 99.5 1E-13 3.5E-18 100.7 9.6 76 122-222 25-100 (101)
343 2f3j_A RNA and export factor b 99.5 1E-13 3.6E-18 111.1 10.2 80 122-221 86-165 (177)
344 3egn_A RNA-binding protein 40; 99.5 8.5E-14 2.9E-18 107.7 9.1 81 122-224 43-131 (143)
345 1fjc_A Nucleolin RBD2, protein 99.5 7E-14 2.4E-18 100.5 7.9 79 121-223 13-91 (96)
346 1whx_A Hypothetical protein ri 99.5 6.1E-14 2.1E-18 103.8 7.5 75 123-222 9-83 (111)
347 3sde_A Paraspeckle component 1 99.5 8.5E-14 2.9E-18 118.6 9.4 80 4-83 94-179 (261)
348 2j8a_A Histone-lysine N-methyl 99.5 9.4E-14 3.2E-18 103.2 8.0 79 125-222 3-95 (136)
349 3s6e_A RNA-binding protein 39; 99.5 2E-13 6.8E-18 101.1 9.6 77 4-81 5-91 (114)
350 2e5g_A U6 snRNA-specific termi 99.5 3.5E-13 1.2E-17 96.5 10.2 75 123-222 7-81 (94)
351 2e5i_A Heterogeneous nuclear r 99.5 1.1E-12 3.6E-17 98.5 13.1 77 124-223 25-102 (124)
352 2dnl_A Cytoplasmic polyadenyla 99.5 3.7E-13 1.3E-17 100.0 10.4 66 123-201 7-72 (114)
353 1x5p_A Negative elongation fac 99.5 8.7E-13 3E-17 95.0 11.9 78 121-225 12-89 (97)
354 3zzy_A Polypyrimidine tract-bi 99.5 2.7E-13 9.2E-18 102.3 9.0 79 122-222 26-105 (130)
355 2cq2_A Hypothetical protein LO 99.4 2.6E-13 8.8E-18 100.1 8.2 82 122-224 23-107 (114)
356 2xs2_A Deleted in azoospermia- 99.4 1.3E-13 4.3E-18 100.3 6.5 78 122-221 7-84 (102)
357 2pe8_A Splicing factor 45; RRM 99.4 7.8E-13 2.7E-17 96.6 9.5 82 122-221 6-92 (105)
358 1wg1_A KIAA1579 protein, homol 99.4 3.5E-13 1.2E-17 95.3 6.9 74 123-222 4-77 (88)
359 2diu_A KIAA0430 protein; struc 99.4 1E-12 3.5E-17 92.3 9.0 68 126-222 11-83 (96)
360 2voo_A Lupus LA protein; RNA-b 99.4 2.8E-12 9.6E-17 104.2 12.1 77 124-221 109-185 (193)
361 2hzc_A Splicing factor U2AF 65 99.4 1.1E-12 3.6E-17 92.4 8.3 72 122-219 4-86 (87)
362 2bz2_A Negative elongation fac 99.4 2E-12 6.7E-17 97.0 9.1 77 122-225 37-113 (121)
363 3d2w_A TAR DNA-binding protein 99.4 9.6E-13 3.3E-17 93.2 6.6 76 121-222 8-83 (89)
364 1wf0_A TDP-43, TAR DNA-binding 99.4 9.3E-13 3.2E-17 93.0 6.0 77 123-225 4-80 (88)
365 2dit_A HIV TAT specific factor 99.3 1.1E-11 3.8E-16 91.6 11.4 80 122-224 13-103 (112)
366 1owx_A Lupus LA protein, SS-B, 99.3 1.1E-11 3.9E-16 91.8 9.4 76 4-82 16-95 (121)
367 3v4m_A Splicing factor U2AF 65 99.3 5.1E-12 1.8E-16 92.2 6.7 82 123-221 4-95 (105)
368 2dnr_A Synaptojanin-1; RRM dom 99.2 3.2E-11 1.1E-15 84.0 8.5 75 3-83 4-86 (91)
369 3u1l_A PRE-mRNA-splicing facto 99.2 1.1E-11 3.9E-16 103.2 7.4 84 121-225 131-231 (240)
370 1jmt_A Splicing factor U2AF 35 99.2 5E-12 1.7E-16 92.2 3.2 72 129-220 20-103 (104)
371 3ue2_A Poly(U)-binding-splicin 99.2 4.1E-11 1.4E-15 89.2 7.0 84 123-221 19-107 (118)
372 2d9o_A DNAJ (HSP40) homolog, s 99.1 7.2E-10 2.5E-14 79.9 11.2 65 134-224 27-91 (100)
373 3s6e_A RNA-binding protein 39; 99.1 2.2E-10 7.6E-15 84.6 8.6 77 122-221 5-91 (114)
374 1ufw_A Synaptojanin 2; RNP dom 99.1 1.5E-10 5.3E-15 80.9 5.9 73 3-81 12-93 (95)
375 3tht_A Alkylated DNA repair pr 99.0 2.9E-10 9.9E-15 99.7 7.1 79 120-220 14-96 (345)
376 1owx_A Lupus LA protein, SS-B, 98.9 2.9E-09 9.8E-14 78.9 8.2 76 119-219 13-92 (121)
377 3dxb_A Thioredoxin N-terminall 98.9 2.6E-09 9E-14 88.4 7.8 76 6-81 124-211 (222)
378 2l9w_A U4/U6 snRNA-associated- 98.8 3.6E-08 1.2E-12 70.2 9.4 73 5-80 20-97 (117)
379 2dnr_A Synaptojanin-1; RRM dom 98.6 6.3E-08 2.1E-12 67.3 5.7 70 125-222 8-85 (91)
380 3dxb_A Thioredoxin N-terminall 98.6 1.1E-07 3.7E-12 78.6 7.4 72 135-221 140-211 (222)
381 2dhx_A Poly (ADP-ribose) polym 98.5 1.2E-06 4.2E-11 61.9 10.8 74 4-83 6-84 (104)
382 1ufw_A Synaptojanin 2; RNP dom 98.4 7.7E-07 2.6E-11 62.2 6.8 69 124-220 15-92 (95)
383 1wey_A Calcipressin 1; structu 98.2 1.3E-05 4.3E-10 57.0 9.9 77 4-83 3-84 (104)
384 2l9w_A U4/U6 snRNA-associated- 98.2 1.2E-05 4E-10 57.4 8.5 72 123-219 20-96 (117)
385 1uw4_A UPF3X; nonsense mediate 97.9 7.4E-05 2.5E-09 52.1 8.0 66 7-72 2-72 (91)
386 1whv_A Poly(A)-specific ribonu 97.8 5.5E-05 1.9E-09 52.8 6.6 54 6-65 16-69 (100)
387 1wwh_A Nucleoporin 35, nucleop 97.7 0.00017 5.9E-09 52.6 8.5 71 6-81 24-95 (119)
388 3ctr_A Poly(A)-specific ribonu 97.7 6.3E-05 2.1E-09 52.7 5.0 54 7-66 7-60 (101)
389 2l08_A Regulator of nonsense t 97.4 0.0004 1.4E-08 48.7 6.4 76 6-81 9-94 (97)
390 1wey_A Calcipressin 1; structu 97.1 0.0015 5E-08 46.4 6.8 73 124-221 5-82 (104)
391 1uw4_A UPF3X; nonsense mediate 97.0 0.0039 1.3E-07 43.3 8.3 71 125-208 2-72 (91)
392 3p3d_A Nucleoporin 53; structu 97.0 0.0023 7.8E-08 47.3 6.9 76 5-82 6-98 (132)
393 3pq1_A Poly(A) RNA polymerase; 96.9 0.00058 2E-08 61.8 3.6 56 5-63 52-107 (464)
394 2dhx_A Poly (ADP-ribose) polym 96.8 0.0088 3E-07 42.2 8.8 71 123-221 7-82 (104)
395 1whv_A Poly(A)-specific ribonu 96.4 0.022 7.5E-07 39.7 8.1 53 126-202 18-70 (100)
396 1wwh_A Nucleoporin 35, nucleop 96.3 0.013 4.5E-07 42.6 7.1 73 121-219 21-93 (119)
397 2l08_A Regulator of nonsense t 95.5 0.017 5.8E-07 40.4 4.4 84 124-220 9-93 (97)
398 3ctr_A Poly(A)-specific ribonu 95.1 0.022 7.6E-07 39.8 3.9 53 126-202 8-60 (101)
399 3pq1_A Poly(A) RNA polymerase; 94.0 0.041 1.4E-06 49.9 4.0 54 125-199 54-107 (464)
400 3p3d_A Nucleoporin 53; structu 92.4 0.28 9.6E-06 36.1 5.7 88 124-221 7-97 (132)
401 3d45_A Poly(A)-specific ribonu 91.4 0.45 1.5E-05 43.7 7.3 55 6-66 440-494 (507)
402 2g0c_A ATP-dependent RNA helic 89.2 1.6 5.5E-05 28.5 6.8 68 8-81 2-75 (76)
403 4eyt_A Telomerase associated p 88.0 4.6 0.00016 27.3 10.1 69 4-79 10-78 (129)
404 4eyt_A Telomerase associated p 76.5 15 0.00051 24.8 7.5 61 122-205 10-70 (129)
405 3d45_A Poly(A)-specific ribonu 67.3 11 0.00036 34.6 6.5 54 126-203 442-495 (507)
406 3lpe_A Putative transcription 56.7 40 0.0014 22.7 6.5 34 32-67 39-72 (92)
407 3ts2_A Protein LIN-28 homolog 56.4 1.9 6.6E-05 32.5 -0.5 28 21-53 2-29 (148)
408 4e8u_A Putative uncharacterize 56.3 16 0.00054 28.1 4.6 56 8-63 14-81 (172)
409 3j21_T 50S ribosomal protein L 54.0 47 0.0016 22.3 6.5 56 10-65 26-83 (86)
410 1vq8_S 50S ribosomal protein L 44.1 51 0.0017 22.0 5.1 54 10-63 25-80 (85)
411 3fry_A Probable copper-exporti 33.9 83 0.0028 19.3 6.4 56 6-65 6-61 (73)
412 3u5e_X 60S ribosomal protein L 33.1 1.1E+02 0.0038 22.5 5.9 55 11-65 83-139 (142)
413 4a17_R RPL23A, 60S ribosomal p 32.8 1.2E+02 0.0042 22.5 6.1 55 11-65 91-147 (150)
414 2e5p_A Protein PHF1, PHD finge 32.3 24 0.00083 22.3 1.9 12 45-56 37-48 (68)
415 4e8u_A Putative uncharacterize 31.6 92 0.0031 23.8 5.4 49 126-192 14-73 (172)
416 2zkr_s 60S ribosomal protein L 30.9 1.2E+02 0.004 22.8 5.8 54 11-64 97-152 (156)
417 3h7h_B Transcription elongatio 30.7 58 0.002 22.7 3.9 34 32-67 40-73 (106)
418 3iz5_X 60S ribosomal protein L 27.7 1E+02 0.0034 23.1 4.9 53 11-63 93-147 (152)
419 2eqj_A Metal-response element- 27.1 34 0.0011 21.7 1.9 11 45-55 41-51 (66)
420 3fut_A Dimethyladenosine trans 26.9 52 0.0018 27.1 3.7 31 7-38 111-141 (271)
421 3uzu_A Ribosomal RNA small sub 25.4 35 0.0012 28.3 2.4 32 7-38 115-146 (279)
422 2okq_A Hypothetical protein YB 25.0 1.3E+02 0.0043 22.2 4.9 42 23-64 50-109 (141)
423 3swz_A Steroid 17-alpha-hydrox 24.8 72 0.0025 28.1 4.5 59 9-74 17-79 (494)
424 2m0o_A PHD finger protein 1; t 24.1 41 0.0014 21.9 1.9 12 45-56 54-65 (79)
425 1ywx_A 30S ribosomal protein S 23.6 1.5E+02 0.0053 20.4 5.0 48 134-196 28-79 (102)
426 2cs4_A Protein C12ORF2; GTP bi 23.1 53 0.0018 22.5 2.4 22 11-32 21-43 (95)
427 4bby_A Alkyldihydroxyacetoneph 23.0 61 0.0021 30.5 3.7 53 13-65 350-408 (658)
428 1x8d_A Hypothetical protein YI 22.4 1.4E+02 0.0049 20.5 4.7 32 22-54 28-60 (104)
429 4a4j_A Pacszia, cation-transpo 22.1 1.3E+02 0.0045 17.8 6.2 55 7-64 4-61 (69)
430 3tbg_A Cytochrome P450 2D6; mo 22.1 60 0.002 28.4 3.4 56 10-72 20-78 (479)
431 1xn9_A 30S ribosomal protein S 22.0 1.5E+02 0.005 20.5 4.6 49 134-197 28-80 (101)
432 2k5n_A Putative cold-shock pro 20.9 41 0.0014 21.8 1.5 10 45-54 14-23 (74)
433 3tqs_A Ribosomal RNA small sub 20.8 36 0.0012 27.8 1.5 31 8-38 98-128 (255)
434 2v94_A RPS24, 30S ribosomal pr 20.3 1.6E+02 0.0055 20.5 4.6 47 135-196 38-88 (107)
435 1qyr_A KSGA, high level kasuga 20.2 75 0.0026 25.8 3.3 30 7-36 91-120 (252)
No 1
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-34 Score=226.32 Aligned_cols=163 Identities=21% Similarity=0.354 Sum_probs=147.8
Q ss_pred CeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC--CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCCC
Q 022981 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (289)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 84 (289)
++|||+|||+++|+++|+++|++||+|.+|.+..+ +.++|||||+|.+.++|++|+..|+|..+.|+.|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 68999999999999999999999999999999654 5678999999999999999998899999999999999987552
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCC
Q 022981 85 GRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQ 164 (289)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~ 164 (289)
. ....+..+|+|+|||..+++++|.++|++||.|..+.+..+..
T Consensus 81 ~---------------------------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~--- 124 (166)
T 3md3_A 81 Q---------------------------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQ--- 124 (166)
T ss_dssp C---------------------------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTT---
T ss_pred C---------------------------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCC---
Confidence 1 1223456999999999999999999999999999999999876
Q ss_pred chhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccC
Q 022981 165 SPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 165 ~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~ 221 (289)
+|.++|||||+|.+.++|.+|+..|++..+. |+.|.|..++
T Consensus 125 ------------~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~i~v~~a~ 165 (166)
T 3md3_A 125 ------------TGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN----GRPLRINWAA 165 (166)
T ss_dssp ------------TCCEEEEEEEEESCHHHHHHHHHHHTTCEET----TEECEEEESC
T ss_pred ------------CCCcceEEEEEeCCHHHHHHHHHHhCCCccC----CcEEEEEecC
Confidence 6688999999999999999999999999998 9999999875
No 2
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=2.5e-34 Score=239.14 Aligned_cols=165 Identities=23% Similarity=0.350 Sum_probs=146.9
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.|.+||||+|||+++|+++|+++|++||+|.+|+|+. ++.++|||||+|.+.++|++||..|++..+.|+.|.|.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 5789999999999999999999999999999999965 4678999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC
Q 022981 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (289)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~ 160 (289)
.... ........+|||+|||..+++++|.++|.+||.|..+.|+.+.
T Consensus 93 ~~~~---------------------------------~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~ 139 (213)
T 4f02_A 93 QRDP---------------------------------SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE 139 (213)
T ss_dssp CCCT---------------------------------HHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET
T ss_pred cccc---------------------------------cccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC
Confidence 7541 0111234589999999999999999999999999999999876
Q ss_pred CCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccCC
Q 022981 161 EGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 222 (289)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~~ 222 (289)
. .++|||||+|.+.++|.+|++.|||..+. |+.|.|..+..
T Consensus 140 ~-----------------~~~g~~fV~f~~~~~a~~Ai~~lng~~~~----g~~i~V~~a~~ 180 (213)
T 4f02_A 140 N-----------------GSKGYGFVHFETQEAAERAIEKMNGMLLN----DRKVFVGRFKS 180 (213)
T ss_dssp T-----------------EEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEEEECCC
T ss_pred C-----------------CCceEEEEEeCCHHHHHHHHHHhCCCEEC----CEEEEEEEcCC
Confidence 5 46899999999999999999999999998 99999998864
No 3
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=1.5e-33 Score=225.21 Aligned_cols=164 Identities=23% Similarity=0.311 Sum_probs=146.9
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
++++|||+|||+++++++|+++|++||+|.+|.++. ++.++|||||+|.++++|++|++.|+|..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 679999999999999999999999999999999964 46678999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC
Q 022981 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (289)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~ 161 (289)
+.. ......+|+|+|||..+++++|.++|++||.|..+.+..+..
T Consensus 82 ~~~-----------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 126 (168)
T 1b7f_A 82 PGG-----------------------------------ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKL 126 (168)
T ss_dssp CCS-----------------------------------STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTT
T ss_pred CCc-----------------------------------ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCC
Confidence 541 112446999999999999999999999999999999999876
Q ss_pred CCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeecc
Q 022981 162 GWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 220 (289)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~ 220 (289)
+|.++|||||+|.+.++|.+|++.|++..+.+ .+++|.|..+
T Consensus 127 ---------------~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~~~l~V~~A 168 (168)
T 1b7f_A 127 ---------------TGRPRGVAFVRYNKREEAQEAISALNNVIPEG--GSQPLSVRLA 168 (168)
T ss_dssp ---------------TCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT--CSSCCEEEEC
T ss_pred ---------------CCCcceEEEEEECCHHHHHHHHHHhcCCEecC--CCeEEEEEeC
Confidence 56789999999999999999999999999971 1388888754
No 4
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=3.9e-33 Score=222.33 Aligned_cols=162 Identities=23% Similarity=0.326 Sum_probs=144.5
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
++++|||+|||+++++++|+++|+.||+|.+|.++. ++.++|||||+|.++++|++|++.|+|..+.|+.|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 468999999999999999999999999999999965 46778999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC
Q 022981 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (289)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~ 161 (289)
+.. ......+|+|+|||..+++++|.++|.+||.|..+.+..+..
T Consensus 81 ~~~-----------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 125 (167)
T 1fxl_A 81 PSS-----------------------------------ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV 125 (167)
T ss_dssp CCC-----------------------------------GGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT
T ss_pred CCc-----------------------------------ccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCC
Confidence 541 112345899999999999999999999999999999998876
Q ss_pred CCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccc--eeeeecc
Q 022981 162 GWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG--RITVKRY 220 (289)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~--~i~v~~~ 220 (289)
+|.++|||||+|.+.++|.+|++.|+|..+. |+ +|.|..|
T Consensus 126 ---------------~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~~~i~v~~A 167 (167)
T 1fxl_A 126 ---------------TGVSRGVGFIRFDKRIEAEEAIKGLNGQKPS----GATEPITVKFA 167 (167)
T ss_dssp ---------------TCCEEEEEEEEESSHHHHHHHHHHHTTCCCT----TCSSCCEEEEC
T ss_pred ---------------CCCccceEEEEeCCHHHHHHHHHHhcCCccC----CCccceEEEeC
Confidence 5688999999999999999999999999998 54 4666543
No 5
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=3.3e-33 Score=228.90 Aligned_cols=172 Identities=13% Similarity=0.221 Sum_probs=145.4
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.+.++|||+|||+++|+++|+++|+.||+|.+|.|+.+ +.++|||||+|.+.++|++||. +++..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEeeeecc
Confidence 56789999999999999999999999999999999654 5678999999999999999998 5999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC
Q 022981 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (289)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~ 160 (289)
....... .........+|||+|||..+++++|.++|..||.|..+.+..+.
T Consensus 90 ~~~~~~~-----------------------------~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 140 (196)
T 1l3k_A 90 VSREDSQ-----------------------------RPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR 140 (196)
T ss_dssp CC----------------------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECT
T ss_pred cCccccc-----------------------------ccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecC
Confidence 7552110 01112345699999999999999999999999999999999987
Q ss_pred CCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccCCCCC
Q 022981 161 EGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSPS 225 (289)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~~~~~ 225 (289)
. +|.++|||||+|.+.++|.+|+.. ++..+. |+.|.|..+.....
T Consensus 141 ~---------------~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~----G~~i~v~~a~~k~~ 185 (196)
T 1l3k_A 141 G---------------SGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVN----GHNCEVRKALSKQE 185 (196)
T ss_dssp T---------------TCCEEEEEEEEESSHHHHHHHHHC-SCCEET----TEECEEEECC----
T ss_pred C---------------CCCccceEEEEECCHHHHHHHHHh-CCcEEC----CEEEEEEecCChhH
Confidence 6 668899999999999999999986 788888 89999999875443
No 6
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=1e-32 Score=227.72 Aligned_cols=194 Identities=14% Similarity=0.123 Sum_probs=148.2
Q ss_pred CCCCeEEEcCCC-CCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccC
Q 022981 4 RFSRTIYVGNLP-SDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (289)
Q Consensus 4 ~~~~~l~V~nLp-~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 82 (289)
.++++|||+||| ..+++++|.++|++||.|.+|+|+.+ .+|||||+|.+.++|+.||+.|||..|.|+.|.|.+++.
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS--KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT--STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 478999999999 79999999999999999999999765 379999999999999999999999999999999999975
Q ss_pred CCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCe--eEE
Q 022981 83 GSGRGPSSSDRR------GGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDV--CFA 154 (289)
Q Consensus 83 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v--~~~ 154 (289)
............ ..+.+... .. -..+..........+..+|||+|||+.+++++|+++|++||.| ..+
T Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~~~~---~r-~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v 155 (205)
T 3tyt_A 80 PAIMPGQSYGLEDGSCSYKDFSESRN---NR-FSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSV 155 (205)
T ss_dssp SCCCCCSCCBCTTSCBSEEECTTCTT---CS-CSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEE
T ss_pred CccCCCcccccccCCccccccCCCcc---cc-ccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEE
Confidence 432110000000 00000000 00 0000000000112346789999999999999999999999999 888
Q ss_pred EEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeecc
Q 022981 155 EVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 220 (289)
Q Consensus 155 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~ 220 (289)
.+..+.. ..+|+|||+|.+.++|.+|+..||+..+.+++...++.|+.+
T Consensus 156 ~~~~~~~-----------------~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 156 KVFSGKS-----------------ERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp EECSCCS-----------------SSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EEEcCCC-----------------CCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 8877643 346999999999999999999999999998888888888753
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=1.4e-32 Score=228.44 Aligned_cols=177 Identities=18% Similarity=0.297 Sum_probs=150.0
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
+.++|||+|||+++|+++|+++|++||+|.+|.|+. ++.++|||||+|.+.++|++|++.|++..|.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 468999999999999999999999999999999965 46789999999999999999999999999999999998876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC
Q 022981 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (289)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~ 161 (289)
......+.. ...........+|||+|||..+++++|.++|++||.|..+.|..+..
T Consensus 107 ~~~~~~~~~------------------------~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~ 162 (216)
T 2qfj_A 107 NIGQAQPII------------------------DQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPT 162 (216)
T ss_dssp CCGGGHHHH------------------------HHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTT
T ss_pred Cccccchhh------------------------hhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCC
Confidence 441000000 00000123456999999999999999999999999999999999876
Q ss_pred CCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccCCCC
Q 022981 162 GWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSP 224 (289)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~~~~ 224 (289)
+|.++|||||+|.+.++|.+|++.|++..+. |+.|.|..+...+
T Consensus 163 ---------------~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~----g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 163 ---------------TGKHKGYGFIEYEKAQSSQDAVSSMNLFDLG----GQYLRVGKAVTPP 206 (216)
T ss_dssp ---------------TCCEEEEEEEEESSHHHHHHHHHHHTTCBCS----SSBCEEEECSSCS
T ss_pred ---------------CCCcCceEEEEecCHHHHHHHHHHccCCEeC----CcEEEEEEecCCC
Confidence 6688999999999999999999999999998 9999999987544
No 8
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=2.4e-32 Score=219.10 Aligned_cols=159 Identities=23% Similarity=0.411 Sum_probs=143.4
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhc----C-------CeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCC
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKY----G-------RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~----G-------~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 72 (289)
+++++|||+|||+++|+++|+++|++| | .|.++.+.. ++|||||+|.++++|++|+ .|||..+.|
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~---~~g~afV~f~~~~~A~~A~-~~~~~~~~g 77 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ---DKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET---TTTEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC---CCCEEEEEeCCHHHHHHHH-HhCCcEecC
Confidence 578999999999999999999999999 7 788887754 4899999999999999999 799999999
Q ss_pred ceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCee
Q 022981 73 CRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVC 152 (289)
Q Consensus 73 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~ 152 (289)
+.|.|.++.... +.....+|+|+|||..+++++|.++|++||.|.
T Consensus 78 ~~i~v~~~~~~~-----------------------------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~ 122 (172)
T 2g4b_A 78 QSLKIRRPHDYQ-----------------------------------PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLK 122 (172)
T ss_dssp EECEEECCSSCC-----------------------------------CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEE
T ss_pred ceeeecCCcccC-----------------------------------CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCce
Confidence 999999876441 112356999999999999999999999999999
Q ss_pred EEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeecc
Q 022981 153 FAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 220 (289)
Q Consensus 153 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~ 220 (289)
.+.+..++. +|.++|||||+|.+.++|.+|++.|++..+. |+.|.|+.+
T Consensus 123 ~v~i~~~~~---------------~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~V~~A 171 (172)
T 2g4b_A 123 AFNLVKDSA---------------TGLSKGYAFCEYVDINVTDQAIAGLNGMQLG----DKKLLVQRA 171 (172)
T ss_dssp EEEEEECTT---------------TCSEEEEEEEEESSTTHHHHHHHHHTTCEET----TEECEEEEC
T ss_pred EEEEEecCC---------------CCCcceEEEEEeCCHHHHHHHHHHcCCCEEC----CeEEEEEeC
Confidence 999999876 5688999999999999999999999999998 999999876
No 9
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=1.8e-32 Score=220.31 Aligned_cols=166 Identities=17% Similarity=0.282 Sum_probs=144.1
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCC-----CCCceEEEEEccHHHHHHHHHHhCCceeC---CceEE
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP-----RPPCYCFVEFENARDAEDAIRGRDGYNFD---GCRLR 76 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~ 76 (289)
++++|||+|||+++|+++|+++|++||+|.+|.++.+. .++|||||+|.+.++|++|++.|++..+. ++.|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999996542 67899999999999999999999998876 68888
Q ss_pred EEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEE
Q 022981 77 VELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEV 156 (289)
Q Consensus 77 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i 156 (289)
+.++.... .......+|||+|||..+++++|+++|++||.|..+.+
T Consensus 82 ~~~~~~~~----------------------------------~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~ 127 (175)
T 3nmr_A 82 MKPADSEK----------------------------------NNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRI 127 (175)
T ss_dssp EEECGGGC----------------------------------CSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred Eccccccc----------------------------------cccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEE
Confidence 88876441 11234569999999999999999999999999999999
Q ss_pred eeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccC
Q 022981 157 SRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~ 221 (289)
..+..| .++|||||+|.+.++|.+|++.|+|..+.. .++++|.|..++
T Consensus 128 ~~~~~g----------------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~-g~~~~l~V~~ad 175 (175)
T 3nmr_A 128 LRGPDG----------------LSRGCAFVTFTTRAMAQTAIKAMHQAQTME-GCSSPMVVKFAD 175 (175)
T ss_dssp EECTTS----------------CEEEEEEEEESSHHHHHHHHHHHTTSCCCT-TCSSCCEEEECC
T ss_pred EECCCC----------------CEEEEEEEEECCHHHHHHHHHHhcCCcccC-CCCCCeEEEecC
Confidence 988654 779999999999999999999999988762 124899998764
No 10
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=1.1e-31 Score=220.19 Aligned_cols=183 Identities=21% Similarity=0.348 Sum_probs=148.4
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhc----C-------CeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCC
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKY----G-------RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~----G-------~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 72 (289)
..+++|||+|||+++|+++|+++|++| | .|.++.+. .++|||||+|.+.++|++|| .|||..|.|
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~---~~~g~afV~F~~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---QDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE---TTTTEEEEEESCSHHHHHHG-GGTTEEETT
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec---CCCCEEEEEeCCHHHHHHHH-HhcCCEEcC
Confidence 578999999999999999999999999 5 67777664 45899999999999999999 799999999
Q ss_pred ceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCee
Q 022981 73 CRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVC 152 (289)
Q Consensus 73 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~ 152 (289)
+.|.|.++.............. ....+..........++|||+|||..+++++|.++|.+||.|.
T Consensus 78 ~~i~v~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~ 142 (198)
T 2yh0_A 78 QSLKIRRPHDYQPLPGMSENPS---------------VYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLK 142 (198)
T ss_dssp EEEEEECCCCCCCCCCSSSCSS---------------CCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEE
T ss_pred ceEEEeCCCCCCCCCCCcCCCc---------------CCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCcc
Confidence 9999999876532111100000 0000011122235668999999999999999999999999999
Q ss_pred EEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccCCCC
Q 022981 153 FAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSP 224 (289)
Q Consensus 153 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~~~~ 224 (289)
.+.+..+.. +|.++|||||+|.+.++|.+|++.|++..+. |+.|.|..+....
T Consensus 143 ~~~~~~~~~---------------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 143 AFNLVKDSA---------------TGLSKGYAFCEYVDINVTDQAIAGLNGMQLG----DKKLLVQRASVGA 195 (198)
T ss_dssp EEEEEECTT---------------TCSEEEEEEEEESSSSHHHHHHHHHTTCEET----TEECEEEESCCCC
T ss_pred EEEEeecCC---------------CCCcceEEEEEECCHHHHHHHHHHcCCCEEC----CEEEEEEECCCCC
Confidence 999999876 5688999999999999999999999999998 9999999987543
No 11
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=7.4e-33 Score=221.07 Aligned_cols=162 Identities=19% Similarity=0.350 Sum_probs=145.2
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
+++++|||+|||+++|+++|+++|++||+|.+|.++. ++.++|||||+|.+.++|++|+.. +..+.|+.|.|.++
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 4789999999999999999999999999999999965 468899999999999999999994 67899999999987
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC
Q 022981 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (289)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~ 160 (289)
.+.. ......+|||+|||..+++++|.++|++||.|..+.+..+.
T Consensus 79 ~~~~-----------------------------------~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~ 123 (167)
T 2cjk_A 79 IPRD-----------------------------------EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDK 123 (167)
T ss_dssp CCHH-----------------------------------HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSS
T ss_pred cchh-----------------------------------hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcC
Confidence 6431 11234589999999999999999999999999999999887
Q ss_pred CCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccCC
Q 022981 161 EGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 222 (289)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~~ 222 (289)
. +|.++|||||+|.+.++|.+|++ +++..+. |+.|.|..+..
T Consensus 124 ~---------------~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~----g~~i~V~~a~p 165 (167)
T 2cjk_A 124 D---------------TGQSRGFGFVTYDSADAVDRVCQ-NKFIDFK----DRKIEIKRAEP 165 (167)
T ss_dssp S---------------SSTTSEEEEEEESSHHHHHHHHH-CSEECSS----SSCEEEEECCC
T ss_pred C---------------CCccceEEEEEECCHHHHHHHHh-CCCEEeC----CeEEEEeecCC
Confidence 6 66889999999999999999998 8999988 99999998864
No 12
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.98 E-value=5e-31 Score=221.64 Aligned_cols=194 Identities=15% Similarity=0.172 Sum_probs=147.6
Q ss_pred CCCCeEEEcCCCC-CccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccC
Q 022981 4 RFSRTIYVGNLPS-DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (289)
Q Consensus 4 ~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 82 (289)
.++++|||+|||+ ++++++|+++|++||.|.+|.|..+. +|||||+|.+.++|++|++.|+|..|.|+.|.|.++..
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~--~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT--SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC--CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 6789999999999 99999999999999999999998765 79999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcC-CeeEEEEeeCCC
Q 022981 83 GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDSE 161 (289)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g-~v~~~~i~~~~~ 161 (289)
.....+..................................+..+|||+|||..+++++|.++|.+|| .|..+.+....
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~- 188 (229)
T 2adc_A 110 QNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD- 188 (229)
T ss_dssp CCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS-
T ss_pred ccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC-
Confidence 5322211111000000000000000000011111112234568999999999999999999999999 99999986532
Q ss_pred CCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccCC
Q 022981 162 GWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 222 (289)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~~ 222 (289)
+|||||+|.+.++|.+|++.|++..+.+ |+.|.|..++.
T Consensus 189 -------------------~g~afV~f~~~~~A~~Ai~~l~g~~~~~---g~~l~v~~a~~ 227 (229)
T 2adc_A 189 -------------------RKMALIQMGSVEEAVQALIDLHNHDLGE---NHHLRVSFSKS 227 (229)
T ss_dssp -------------------TTCEEEEESSHHHHHHHHHHHTTCBSSS---SCBCEEEECSS
T ss_pred -------------------CcEEEEEECCHHHHHHHHHHHCCCccCC---CCeEEEEEecC
Confidence 4799999999999999999999999863 78999988754
No 13
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.98 E-value=1.4e-30 Score=225.52 Aligned_cols=196 Identities=19% Similarity=0.251 Sum_probs=148.2
Q ss_pred CCCCCeEEEcCCCCCccHHHHH----HHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEE
Q 022981 3 GRFSRTIYVGNLPSDIREYEVE----DLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (289)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~----~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 78 (289)
.+++++|||+|||+++|+++|+ ++|++||.|.+|.+..++.++|||||+|.+.++|++|++.|||..|.|+.|.|.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 4889999999999999999976 899999999999998888999999999999999999999999999999999999
Q ss_pred EccCCCCCCCCCCCCC-----------------------CCCCCCC------CCC-------------------------
Q 022981 79 LAHGGSGRGPSSSDRR-----------------------GGYGGGG------AGG------------------------- 104 (289)
Q Consensus 79 ~~~~~~~~~~~~~~~~-----------------------~~~~~~~------~~~------------------------- 104 (289)
++.............. ....... .+.
T Consensus 86 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (282)
T 3pgw_A 86 YAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMP 165 (282)
T ss_pred EeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCC
Confidence 9975431000000000 0000000 000
Q ss_pred ----CCCCCCCCC-------------CC-----CCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC
Q 022981 105 ----AGGAGAGAG-------------AG-----RFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG 162 (289)
Q Consensus 105 ----~~~~~~~~~-------------~~-----~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~ 162 (289)
....+.... .. .......+.++|||+|||..+++++|+++|.+||.|..+.+..+..
T Consensus 166 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~- 244 (282)
T 3pgw_A 166 PPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRH- 244 (282)
T ss_pred CCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCC-
Confidence 000000000 00 0001223467899999999999999999999999999999986543
Q ss_pred CCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccC
Q 022981 163 WQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~ 221 (289)
|||||+|.+.++|.+|++.|+|..+.+ |+.|+|..++
T Consensus 245 -------------------g~afV~f~~~~~A~~A~~~l~g~~~~~---g~~l~v~~ak 281 (282)
T 3pgw_A 245 -------------------DIAFVEFDNEVQAGAARDALQGFKITQ---NNAMKISFAK 281 (282)
T ss_pred -------------------cEEEEEeCCHHHHHHHHHHcCCcEeCC---CCEEEEEEec
Confidence 799999999999999999999998873 7899998775
No 14
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.98 E-value=4.4e-31 Score=216.84 Aligned_cols=193 Identities=16% Similarity=0.174 Sum_probs=146.9
Q ss_pred CCCeEEEcCCCC-CccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCC
Q 022981 5 FSRTIYVGNLPS-DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (289)
Q Consensus 5 ~~~~l~V~nLp~-~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (289)
.+++|||+|||+ ++++++|+++|++||.|.+|.+..+. +|||||+|.+.++|++|+..|||..|.|+.|.|.++...
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~--~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC--SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 468999999999 99999999999999999999998764 799999999999999999999999999999999999865
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcC-CeeEEEEeeCCCC
Q 022981 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDSEG 162 (289)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g-~v~~~~i~~~~~~ 162 (289)
....+.......................+..........+..+|+|+|||..+++++|.++|.+|| .|..+.+..+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-- 157 (198)
T 1qm9_A 80 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-- 157 (198)
T ss_dssp SCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT--
T ss_pred CcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC--
Confidence 322211111000000000000000000111111222234578999999999999999999999999 99999986643
Q ss_pred CCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccCC
Q 022981 163 WQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 222 (289)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~~ 222 (289)
+|+|||+|.+.++|.+|+..|+|..+.+ |+.|.|..++.
T Consensus 158 ------------------~g~afV~f~~~~~A~~A~~~l~g~~~~~---g~~l~v~~a~~ 196 (198)
T 1qm9_A 158 ------------------RKMALIQMGSVEEAVQALIDLHNHDLGE---NHHLRVSFSKS 196 (198)
T ss_dssp ------------------SSCEEEECSSHHHHHHHHHHHTSSCCSS---CCSCCEEEECC
T ss_pred ------------------CcEEEEEeCCHHHHHHHHHHhcCCccCC---CCeEEEEeecc
Confidence 4799999999999999999999999863 78898887753
No 15
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=8e-32 Score=216.88 Aligned_cols=162 Identities=15% Similarity=0.221 Sum_probs=140.2
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEE--ccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL--KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
.+.++|||+|||+++|+++|+++|..||.|..+.+ ..++.++|||||+|.++++|++|++ |||..|.|+.|.|.++.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~~ 89 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 89 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecCC
Confidence 67899999999999999999999999997766322 2346789999999999999999996 99999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC
Q 022981 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (289)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~ 161 (289)
... ........+|||+|||..+++++|.++|.+||.|..+ ..
T Consensus 90 ~~~---------------------------------~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~ 131 (175)
T 1fje_B 90 GRD---------------------------------SKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQ 131 (175)
T ss_dssp CSS---------------------------------CSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CS
T ss_pred Ccc---------------------------------ccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cC
Confidence 541 1122356799999999999999999999999988765 22
Q ss_pred CCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccCCC
Q 022981 162 GWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 223 (289)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~~~ 223 (289)
++.++|||||+|.+.++|.+|+..|+|..+. |+.|.|..+...
T Consensus 132 ---------------~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~i~v~~a~~k 174 (175)
T 1fje_B 132 ---------------DGKSKGIAYIEFKSEADAEKNLEEKQGAEID----GRSVSLYYTGEK 174 (175)
T ss_dssp ---------------SSSCCSEEEEECSSHHHHHHHHHHHTEEEET----TEEEEEEECSSC
T ss_pred ---------------CCCCceEEEEEECCHHHHHHHHHHhCCCEEC----CeEEEEEecCCC
Confidence 4578999999999999999999999999998 899999988643
No 16
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=3.8e-30 Score=222.89 Aligned_cols=170 Identities=18% Similarity=0.225 Sum_probs=151.1
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.+.++|||+|||+++|+++|.++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 4678999999999999999999999999999999864 4678999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCC-CHHHHHHHHHhcCCeeEEEEeeC
Q 022981 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSA-SWQDLKDHMRKAGDVCFAEVSRD 159 (289)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~-~~~~l~~~f~~~g~v~~~~i~~~ 159 (289)
..... ........+|||+|||..+ ++++|.++|+.||.|..+.|..+
T Consensus 173 ~~~~~--------------------------------~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~ 220 (284)
T 3smz_A 173 DAGQL--------------------------------TPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACG 220 (284)
T ss_dssp CGGGC--------------------------------CTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEEC
T ss_pred CCCCC--------------------------------CcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEEC
Confidence 75421 1122355699999999995 99999999999999999999987
Q ss_pred CCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccCCCCC
Q 022981 160 SEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSPS 225 (289)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~~~~~ 225 (289)
..| .++|+|||+|.+.++|.+|+..|+|..+. |+.|.|..+.....
T Consensus 221 ~~g----------------~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 221 QDG----------------QLKGFAVLEYETAEMAEEAQQQADGLSLG----GSHLRVSFCAPGPP 266 (284)
T ss_dssp SSC----------------CEEEEEEEECSSHHHHHHHHHHHTTCEET----TEECEEEECCSSSC
T ss_pred CCC----------------CcccEEEEEeCCHHHHHHHHHHhCCCccC----CeEEEEEEecCCCc
Confidence 664 77899999999999999999999999998 99999999875443
No 17
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=3.1e-30 Score=220.98 Aligned_cols=159 Identities=24% Similarity=0.317 Sum_probs=143.1
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCC
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (289)
.+.++|||+|||+++|+++|.++|+.||.|..|.+..+ +|||||+|.+.++|..|+..|||..|.|+.|.|.++.+.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 96 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD---RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHG 96 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccC
Confidence 45679999999999999999999999999999999644 899999999999999999999999999999999998643
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCC
Q 022981 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGW 163 (289)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~ 163 (289)
.+|||+|||..+++++|.++|..||.|..+.|..+..
T Consensus 97 -----------------------------------------~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~-- 133 (261)
T 3sde_A 97 -----------------------------------------AALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDR-- 133 (261)
T ss_dssp -----------------------------------------SEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--
T ss_pred -----------------------------------------CcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCC--
Confidence 4899999999999999999999999999999998844
Q ss_pred CchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccCC
Q 022981 164 QSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 222 (289)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~~ 222 (289)
|.++|||||+|.+.++|.+|+..|++..+.....+++|.|..+..
T Consensus 134 --------------g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~ 178 (261)
T 3sde_A 134 --------------GRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQ 178 (261)
T ss_dssp --------------SCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCC
T ss_pred --------------CCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccc
Confidence 578999999999999999999999665554344478999988864
No 18
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=8.7e-30 Score=220.65 Aligned_cols=155 Identities=23% Similarity=0.272 Sum_probs=143.7
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCC
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (289)
.++++|||+|||+++|+++|.++|+.|| |..+.+ +.++|||||+|.+.++|++|+..|||..|.|+.|.|.++..
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~- 94 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV---DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPT- 94 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE---ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE---ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCC-
Confidence 4678999999999999999999999999 999988 45689999999999999999999999999999999998642
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCC
Q 022981 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGW 163 (289)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~ 163 (289)
..+|||+|||..+++++|.++|..||.|..+.+..+..
T Consensus 95 ----------------------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~-- 132 (284)
T 3smz_A 95 ----------------------------------------DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSER-- 132 (284)
T ss_dssp ----------------------------------------SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT--
T ss_pred ----------------------------------------CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCC--
Confidence 24999999999999999999999999999999998876
Q ss_pred CchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccCC
Q 022981 164 QSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 222 (289)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~~ 222 (289)
+|.++|||||+|.+.++|.+|++.|++..+. |+.|.|..+..
T Consensus 133 -------------~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~----g~~i~v~~a~~ 174 (284)
T 3smz_A 133 -------------TGQSKGYGFAEYMKKDSAARAKSDLLGKPLG----PRTLYVHWTDA 174 (284)
T ss_dssp -------------TCCEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEEEECCG
T ss_pred -------------CCccceEEEEEECCHHHHHHHHHHhCCCEeC----CcEEEEEECCC
Confidence 6788999999999999999999999999998 89999998864
No 19
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=5.9e-30 Score=222.57 Aligned_cols=172 Identities=13% Similarity=0.261 Sum_probs=145.3
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcC-CeeEEEEccC--CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYG-RILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G-~i~~v~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
+.++|||+|||+++++++|.++|+.|| .|..|.+..+ +.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 9999999654 4679999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCC-CCHHHHHHHHHhcCCeeEEEEeeCC
Q 022981 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSS-ASWQDLKDHMRKAGDVCFAEVSRDS 160 (289)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~-~~~~~l~~~f~~~g~v~~~~i~~~~ 160 (289)
+....... ........+|||+|||.. +++++|.++|..||.|..+.|..+.
T Consensus 196 ~~~~~~~~----------------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~ 247 (292)
T 2ghp_A 196 PLEKSKRT----------------------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQ 247 (292)
T ss_dssp CC-------------------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCC
T ss_pred CCcccccc----------------------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecC
Confidence 65211100 112345679999999999 9999999999999999999998876
Q ss_pred CCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccCCC
Q 022981 161 EGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 223 (289)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~~~ 223 (289)
.. ||.++|||||+|.+.++|.+|+ .|+|..+. |+.|.|..+...
T Consensus 248 ~~--------------tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~----g~~i~V~~a~~k 291 (292)
T 2ghp_A 248 KE--------------HSFNNCCAFMVFENKDSAERAL-QMNRSLLG----NREISVSLADKK 291 (292)
T ss_dssp C-----------------CCCEEEEEEESSHHHHHHHG-GGTTEEET----TEEEEEEECCCC
T ss_pred Cc--------------CCCCceEEEEEeCCHHHHHHHH-HhcCCEEC----CcEEEEEEecCC
Confidence 51 3578999999999999999999 99999998 999999998754
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=2e-29 Score=219.21 Aligned_cols=157 Identities=18% Similarity=0.234 Sum_probs=137.5
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC-CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccC
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 82 (289)
++.++|||+|||+++|+++|.++|+.||+|..|.|..+ ..++|||||+|.+.++|++|++ |+|..|.|+.|.|.++..
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~~~ 117 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHLTE 117 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEECCC
Confidence 56899999999999999999999999999999999764 3358999999999999999996 999999999999998753
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcC-CeeEEEEeeCCC
Q 022981 83 GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDSE 161 (289)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g-~v~~~~i~~~~~ 161 (289)
. +|||+|||..+++++|.++|..|| .|..+.+..+..
T Consensus 118 ~------------------------------------------~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~ 155 (292)
T 2ghp_A 118 C------------------------------------------TLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF 155 (292)
T ss_dssp C------------------------------------------EEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC----
T ss_pred C------------------------------------------EEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC
Confidence 3 999999999999999999999999 999999988765
Q ss_pred CCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccceeeeeccCCC
Q 022981 162 GWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 223 (289)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~~~ 223 (289)
| .++|||||+|.+.++|.+|+..|++..+. |+.|.|..+...
T Consensus 156 ~----------------~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~a~~~ 197 (292)
T 2ghp_A 156 N----------------TSRRFAYIDVTSKEDARYCVEKLNGLKIE----GYTLVTKVSNPL 197 (292)
T ss_dssp -------------------CCEEEEECSSHHHHHHHHHHHTTCEET----TEECEEEECCCC
T ss_pred C----------------CcceEEEEEECCHHHHHHHHHHhCCCEeC----CcEEEEEECCCC
Confidence 4 67899999999999999999999999998 899999988643
No 21
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.90 E-value=4.7e-24 Score=159.76 Aligned_cols=109 Identities=22% Similarity=0.297 Sum_probs=73.5
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC-CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCC
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (289)
.+.+|||+|||+++|+++|+++|++||.|.+|+|+.+ +.++|||||+|.+.++|++||+.|+|..|.|+.|.|.++...
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 3678999999999999999999999999999999764 456899999999999999999999999999999999999865
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHH
Q 022981 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQD 140 (289)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~ 140 (289)
..+.... ........+|||+|||+.+|++.
T Consensus 84 ~~~~~~~---------------------------~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KEREAEL---------------------------GARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC-------------------------------------------------------
T ss_pred ccccccc---------------------------ccccCCCCceEeCCCCCCccccc
Confidence 3221111 11123345799999999998763
No 22
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.87 E-value=6.8e-22 Score=156.30 Aligned_cols=148 Identities=16% Similarity=0.064 Sum_probs=110.1
Q ss_pred EEEccC-CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 022981 36 IELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGA 114 (289)
Q Consensus 36 v~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (289)
++|..+ ...+|||||+|.+.++|++|+..+++....+..+.+............. ..
T Consensus 3 ~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~ 60 (158)
T 2kn4_A 3 YKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGS----------------------HH 60 (158)
T ss_dssp EEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCC----------------------CC
T ss_pred EEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccc----------------------cc
Confidence 445444 3678999999999999999998887644333333322111100000000 00
Q ss_pred CCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHH
Q 022981 115 GRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDM 194 (289)
Q Consensus 115 ~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a 194 (289)
...........+|||+|||..+++++|.++|+.||.|..+.|..+.. +|.++|||||+|.+.++|
T Consensus 61 ~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~---------------~g~~~g~afV~f~~~~~a 125 (158)
T 2kn4_A 61 HHHHMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRY---------------TKESRGFAFVRFHDKRDA 125 (158)
T ss_dssp SSCCCCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSS---------------CTTSCCEEEEEESBHHHH
T ss_pred cccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---------------CCccceEEEEEECCHHHH
Confidence 01122234567999999999999999999999999999999999876 678999999999999999
Q ss_pred HHHHHhcCCcccCCccccceeeeeccCCCC
Q 022981 195 KYAIRKLDDTEFRNPWARGRITVKRYDRSP 224 (289)
Q Consensus 195 ~~a~~~~~~~~~~~~~~g~~i~v~~~~~~~ 224 (289)
.+|++.|++..+. |+.|.|..+....
T Consensus 126 ~~A~~~l~g~~~~----g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 126 EDAMDAMDGAVLD----GRELRVQMARYGR 151 (158)
T ss_dssp HHHHHHSTTEESS----SSEEEEEEECCSS
T ss_pred HHHHHHhCCCEEC----CeEEEEEECCCCC
Confidence 9999999999998 9999999997543
No 23
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.87 E-value=4.7e-21 Score=174.71 Aligned_cols=81 Identities=30% Similarity=0.533 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.+.++|||+|||+.||+++|.++|++||.|+.|.|+. ++.++|||||+|.+.++|++||..|||..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 4668999999999999999999999999999999965 4678999999999999999999999999999999999999
Q ss_pred cCCC
Q 022981 81 HGGS 84 (289)
Q Consensus 81 ~~~~ 84 (289)
....
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 8653
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=1.2e-21 Score=142.55 Aligned_cols=78 Identities=26% Similarity=0.408 Sum_probs=73.2
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
+.++|||+|||+++|+++|+++|++||+|..|+|.. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.+++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 567899999999999999999999999999999965 46789999999999999999999999999999999999997
Q ss_pred C
Q 022981 82 G 82 (289)
Q Consensus 82 ~ 82 (289)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 4
No 25
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.86 E-value=7e-22 Score=180.15 Aligned_cols=81 Identities=14% Similarity=0.179 Sum_probs=75.5
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhc
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKL 201 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 201 (289)
.+.++|||+|||+.+++++|.++|.+||.|..|.|+.+.. ||.++|||||+|.+.++|.+||..|
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~---------------tg~~kG~aFV~F~~~e~A~~Ai~~l 164 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKR---------------SGKPRGYAFIEYEHERDMHSAYKHA 164 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCC---------------CCCccceEEEeeccHHHHHHHHHHc
Confidence 3457999999999999999999999999999999998876 6788999999999999999999999
Q ss_pred CCcccCCccccceeeeeccC
Q 022981 202 DDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 202 ~~~~~~~~~~g~~i~v~~~~ 221 (289)
++..|. |..|.|..+.
T Consensus 165 ng~~i~----gr~i~V~~a~ 180 (437)
T 3pgw_S 165 DGKKID----GRRVLVDVER 180 (437)
T ss_pred CCCEEC----CEEEEEEEeC
Confidence 999998 9999999876
No 26
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.85 E-value=1.5e-21 Score=146.06 Aligned_cols=106 Identities=26% Similarity=0.361 Sum_probs=95.3
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccC
Q 022981 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (289)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 82 (289)
..++++|||+|||+++++++|.++|++||.|..|.+..++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 46789999999999999999999999999999999988888899999999999999999999999999999999999985
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCe
Q 022981 83 GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDV 151 (289)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v 151 (289)
.. ...+++...++++|.++|.+||.-
T Consensus 85 ~~-------------------------------------------~~~~~~~~~~~~~l~~~~~~~g~~ 110 (115)
T 3lqv_A 85 NR-------------------------------------------AFQKMDTKKKEEQLKLLKEKYGIN 110 (115)
T ss_dssp HH-------------------------------------------HTTTSCHHHHHHHHHHHHHHHCCC
T ss_pred Ch-------------------------------------------hhhhhhHhHhHHHHHHHHHHhCCC
Confidence 41 014567778889999999999853
No 27
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.6e-20 Score=139.01 Aligned_cols=81 Identities=59% Similarity=1.034 Sum_probs=77.2
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccC
Q 022981 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (289)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 82 (289)
..+.++|||+|||+++|+++|+++|++||.|..|.|..++.++|||||+|.+.++|++||+.||+..|.|+.|.|.++++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 46789999999999999999999999999999999988888899999999999999999999999999999999999986
Q ss_pred C
Q 022981 83 G 83 (289)
Q Consensus 83 ~ 83 (289)
.
T Consensus 99 ~ 99 (109)
T 1x4a_A 99 G 99 (109)
T ss_dssp C
T ss_pred C
Confidence 6
No 28
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.84 E-value=8.4e-21 Score=138.57 Aligned_cols=75 Identities=45% Similarity=0.725 Sum_probs=71.8
Q ss_pred CeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCC
Q 022981 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (289)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (289)
++|||+|||+++|+++|+++|++||+|..|.+..+ ++|||||+|.+.++|++|+..|||..|.|+.|.|.++.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN--PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS--SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999876 7899999999999999999999999999999999999876
No 29
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.7e-20 Score=136.74 Aligned_cols=80 Identities=21% Similarity=0.292 Sum_probs=73.6
Q ss_pred CCCCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhC--CceeCCceEEEEE
Q 022981 2 SGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD--GYNFDGCRLRVEL 79 (289)
Q Consensus 2 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--g~~~~g~~l~v~~ 79 (289)
+..+.++|||+|||+++|+++|+++|++||+|.+|.|+.+ +|||||+|++.++|+.|++.|+ +..|.|++|.|.+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~---kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 4578999999999999999999999999999999999865 8999999999999999999886 4789999999999
Q ss_pred ccCCC
Q 022981 80 AHGGS 84 (289)
Q Consensus 80 ~~~~~ 84 (289)
++...
T Consensus 89 A~~~~ 93 (105)
T 1sjq_A 89 SNHKE 93 (105)
T ss_dssp CSSSS
T ss_pred cCCCC
Confidence 98663
No 30
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=2.2e-20 Score=138.38 Aligned_cols=81 Identities=19% Similarity=0.289 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEE
Q 022981 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (289)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 79 (289)
..+.++|||+|||+++++++|+++|++||.|.+|.|+.+ ++++|||||+|.+.++|++|++.|||..|.|+.|.|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 368899999999999999999999999999999999654 67899999999999999999999999999999999999
Q ss_pred ccCC
Q 022981 80 AHGG 83 (289)
Q Consensus 80 ~~~~ 83 (289)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 9754
No 31
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.83 E-value=7.6e-20 Score=133.97 Aligned_cols=76 Identities=20% Similarity=0.424 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCC
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (289)
.+.++|||+|||+++|+++|+++|++||.|..|.+. ++||||+|.+.++|++|+..||+..|.|+.|.|.++.+.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 578999999999999999999999999999999987 679999999999999999999999999999999999876
Q ss_pred C
Q 022981 84 S 84 (289)
Q Consensus 84 ~ 84 (289)
.
T Consensus 84 ~ 84 (103)
T 2dgu_A 84 D 84 (103)
T ss_dssp C
T ss_pred c
Confidence 4
No 32
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.83 E-value=9e-21 Score=135.72 Aligned_cols=78 Identities=18% Similarity=0.307 Sum_probs=71.4
Q ss_pred CCeEEEcCCCCCccHHHHHHHHhhcC-CeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHh-CCceeCCceEEEEEc
Q 022981 6 SRTIYVGNLPSDIREYEVEDLFYKYG-RILDIELKIP---PRPPCYCFVEFENARDAEDAIRGR-DGYNFDGCRLRVELA 80 (289)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G-~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l-~g~~~~g~~l~v~~~ 80 (289)
+++|||+|||+++|+++|+++|++|| +|.+|+|+.+ +.++|||||+|.+.++|++||+.| ++..|.|+.|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57999999999999999999999999 8999999654 688999999999999999999977 466799999999999
Q ss_pred cCC
Q 022981 81 HGG 83 (289)
Q Consensus 81 ~~~ 83 (289)
.+.
T Consensus 81 ~~~ 83 (91)
T 2lxi_A 81 DPK 83 (91)
T ss_dssp CSC
T ss_pred CCC
Confidence 865
No 33
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.83 E-value=5.7e-20 Score=137.61 Aligned_cols=83 Identities=24% Similarity=0.447 Sum_probs=77.3
Q ss_pred CCCCCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc--CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEE
Q 022981 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (289)
Q Consensus 1 m~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 78 (289)
|...+.++|||+|||+++++++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.
T Consensus 2 ~e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp CTTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3457889999999999999999999999999999999966 46788999999999999999999999999999999999
Q ss_pred EccCC
Q 022981 79 LAHGG 83 (289)
Q Consensus 79 ~~~~~ 83 (289)
+++..
T Consensus 82 ~a~~~ 86 (116)
T 2fy1_A 82 QAKKP 86 (116)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99865
No 34
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1e-19 Score=133.24 Aligned_cols=81 Identities=32% Similarity=0.487 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC-CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
..+.++|||+|||+++++++|+++|++||+|..|.|..+ ...+|||||+|.+.++|++|+..||+..|.|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 367899999999999999999999999999999999775 3468999999999999999999999999999999999998
Q ss_pred CC
Q 022981 82 GG 83 (289)
Q Consensus 82 ~~ 83 (289)
+.
T Consensus 92 ~~ 93 (103)
T 2cqi_A 92 TP 93 (103)
T ss_dssp CT
T ss_pred CC
Confidence 76
No 35
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.83 E-value=3.1e-20 Score=133.97 Aligned_cols=77 Identities=17% Similarity=0.187 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCce--eCCceEEEEEcc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYN--FDGCRLRVELAH 81 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~--~~g~~l~v~~~~ 81 (289)
.|+++|||+|||+++|+++|.++|++||.|.+|.+.. .+|||||+|++.++|.+|+..|++.. |.|++|.|++++
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~---~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP---KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc---CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 6899999999999999999999999999999999974 38999999999999999999998875 789999999998
Q ss_pred CC
Q 022981 82 GG 83 (289)
Q Consensus 82 ~~ 83 (289)
..
T Consensus 96 ~k 97 (100)
T 3r27_A 96 SQ 97 (100)
T ss_dssp CS
T ss_pred cc
Confidence 65
No 36
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=9.6e-20 Score=132.41 Aligned_cols=81 Identities=28% Similarity=0.386 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.+.++|||+|||+++++++|+++|++||+|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 6789999999999999999999999999999999965 4678999999999999999999999999999999999999
Q ss_pred cCCC
Q 022981 81 HGGS 84 (289)
Q Consensus 81 ~~~~ 84 (289)
....
T Consensus 86 ~~~~ 89 (99)
T 1whw_A 86 TIKK 89 (99)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 8763
No 37
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=9.7e-20 Score=131.33 Aligned_cols=81 Identities=27% Similarity=0.434 Sum_probs=76.2
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEE
Q 022981 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (289)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 79 (289)
..++++|||+|||+++++++|+++|++||.|..|.+..+ +.++|||||+|.+.++|++|+..|||..|.|+.|.|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 357899999999999999999999999999999999764 67899999999999999999999999999999999999
Q ss_pred ccCC
Q 022981 80 AHGG 83 (289)
Q Consensus 80 ~~~~ 83 (289)
+.+.
T Consensus 82 a~~~ 85 (95)
T 2dnz_A 82 VTER 85 (95)
T ss_dssp SSCC
T ss_pred cccc
Confidence 9876
No 38
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.83 E-value=4.7e-20 Score=144.42 Aligned_cols=138 Identities=18% Similarity=0.166 Sum_probs=111.0
Q ss_pred CCCCceEEEEEccHHHHHHHHHHh-CCceeCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 022981 42 PRPPCYCFVEFENARDAEDAIRGR-DGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGIS 120 (289)
Q Consensus 42 ~~~~g~afV~f~~~~~A~~A~~~l-~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (289)
...+|+++|+|.+.++|++|++.| ||..++| .|.+.++............ .........
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~-------------------~~~~~~~~~ 69 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHH-------------------HHHHMHRDS 69 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSS-------------------CCCCSCSSS
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccccc-------------------ccccccccC
Confidence 356899999999999999999999 9999999 9999987643100000000 000112233
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 121 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
..+.++|||+|||+.+++++|.++|.+||.|..+.|..+. +|||||+|.+.++|..|+..
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~--------------------~g~afV~f~~~~~a~~A~~~ 129 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNP--------------------PGFAFVEFEDPRDAADAVRE 129 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSS--------------------CSEEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCC--------------------CcEEEEEECCHHHHHHHHHH
Confidence 4456799999999999999999999999999999998753 47999999999999999999
Q ss_pred cCCcccCCccccceeeeeccCCC
Q 022981 201 LDDTEFRNPWARGRITVKRYDRS 223 (289)
Q Consensus 201 ~~~~~~~~~~~g~~i~v~~~~~~ 223 (289)
|++..+. |+.|.|+.+...
T Consensus 130 l~g~~~~----g~~l~v~~a~~~ 148 (150)
T 2i2y_A 130 LDGRTLC----GCRVRVELSNGE 148 (150)
T ss_dssp HSSSCSS----SSCCEEEECCCC
T ss_pred cCCCEEC----CeEEEEEEcCCC
Confidence 9999998 999999988653
No 39
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.82 E-value=2.1e-20 Score=134.59 Aligned_cols=79 Identities=19% Similarity=0.287 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCC--eeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCc----eeCCce
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGR--ILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGY----NFDGCR 74 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~--i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~----~~~g~~ 74 (289)
..-.||||+|||+++|+++|+++|++||. |.+|+++.+ +.++|||||+|.+.++|++|++.|||. .|+|+.
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 55679999999999999999999999995 678888654 688999999999999999999999996 589999
Q ss_pred EEEEEccC
Q 022981 75 LRVELAHG 82 (289)
Q Consensus 75 l~v~~~~~ 82 (289)
|.|.+|+.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999975
No 40
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.82 E-value=6.6e-20 Score=132.53 Aligned_cols=79 Identities=25% Similarity=0.535 Sum_probs=74.7
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
|+++|||+|||+++++++|+++|++||.|..|.+..+ +.++|||||+|.+.++|++|++.|||..|.|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 6789999999999999999999999999999999754 6779999999999999999999999999999999999998
Q ss_pred CC
Q 022981 82 GG 83 (289)
Q Consensus 82 ~~ 83 (289)
+.
T Consensus 81 ~~ 82 (96)
T 2x1f_A 81 NS 82 (96)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 41
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.2e-19 Score=134.37 Aligned_cols=79 Identities=25% Similarity=0.370 Sum_probs=74.1
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.+.++|||+|||+++|+++|+++|++||.|..|.|..+ +.++|||||+|.+.++|++||..|++ .|.|+.|.|.++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 67899999999999999999999999999999999664 67899999999999999999999998 899999999999
Q ss_pred cCC
Q 022981 81 HGG 83 (289)
Q Consensus 81 ~~~ 83 (289)
...
T Consensus 94 ~~~ 96 (116)
T 2cqd_A 94 YLG 96 (116)
T ss_dssp TTT
T ss_pred ccC
Confidence 865
No 42
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.3e-20 Score=134.11 Aligned_cols=81 Identities=31% Similarity=0.506 Sum_probs=76.1
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.+.++|||+|||+++++++|+++|++||+|..|.|+.+ +.++|||||+|.+.++|++|++.||+..|.|+.|.|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 67899999999999999999999999999999999654 678999999999999999999999999999999999999
Q ss_pred cCCC
Q 022981 81 HGGS 84 (289)
Q Consensus 81 ~~~~ 84 (289)
.+..
T Consensus 90 ~~~~ 93 (102)
T 2cqb_A 90 KPMR 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8763
No 43
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=5.5e-20 Score=133.44 Aligned_cols=81 Identities=22% Similarity=0.360 Sum_probs=75.3
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC------CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEE
Q 022981 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP------PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (289)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 76 (289)
+.+.++|||+|||+++++++|+++|++||+|..|.|..+ +.++|||||+|.+.++|++|+..|||..|.|+.|.
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 468899999999999999999999999999999999653 26789999999999999999999999999999999
Q ss_pred EEEccCC
Q 022981 77 VELAHGG 83 (289)
Q Consensus 77 v~~~~~~ 83 (289)
|.++...
T Consensus 82 V~~a~~~ 88 (98)
T 2cpf_A 82 VRISERA 88 (98)
T ss_dssp EECSSCS
T ss_pred EEEccCC
Confidence 9999866
No 44
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=131.45 Aligned_cols=80 Identities=23% Similarity=0.337 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCccHHHHH----HHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEE
Q 022981 4 RFSRTIYVGNLPSDIREYEVE----DLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~----~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 79 (289)
.+.++|||+|||+++++++|+ ++|++||+|.+|.|+.+...+|||||+|.+.++|++|++.|||..|.|+.|.|.+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 467899999999999999999 9999999999999987654489999999999999999999999999999999999
Q ss_pred ccCC
Q 022981 80 AHGG 83 (289)
Q Consensus 80 ~~~~ 83 (289)
+.+.
T Consensus 87 a~~~ 90 (96)
T 2dgx_A 87 ATGA 90 (96)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 9865
No 45
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.82 E-value=5.1e-20 Score=128.31 Aligned_cols=75 Identities=12% Similarity=0.141 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
-.+.-|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.++++|++|++.||+..+.|+.|.|.++.
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~---~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL---NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC---CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 4567899999999999999999999999999999975 59999999999999999999999999999999999985
No 46
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.5e-19 Score=131.46 Aligned_cols=80 Identities=24% Similarity=0.467 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.+.++|||+|||+++++++|+++|++||.|..|.|+.+ +.++|||||+|.+.++|++|++ |++..|.|+.|.|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 67899999999999999999999999999999999764 6789999999999999999999 9999999999999999
Q ss_pred cCCC
Q 022981 81 HGGS 84 (289)
Q Consensus 81 ~~~~ 84 (289)
.+..
T Consensus 87 ~~~~ 90 (99)
T 2dgs_A 87 EPRD 90 (99)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 8763
No 47
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=3.9e-20 Score=134.60 Aligned_cols=77 Identities=18% Similarity=0.179 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCC-CccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCC--ceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPS-DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG--YNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~v~~~ 80 (289)
.++++|||+|||+ ++|+++|+++|++||.|.+|.|+.+ +|||||+|++.++|+.|++.||+ ..|.|++|.|.++
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 89 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK---INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLS 89 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS---SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEEC
Confidence 6899999999999 9999999999999999999999765 69999999999999999999886 4599999999999
Q ss_pred cCC
Q 022981 81 HGG 83 (289)
Q Consensus 81 ~~~ 83 (289)
+..
T Consensus 90 ~~~ 92 (102)
T 1x4d_A 90 QKY 92 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 854
No 48
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=7.6e-20 Score=133.94 Aligned_cols=80 Identities=35% Similarity=0.502 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.+.++|||+|||+++++++|+++|++||.|..|.|..+ +.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 57899999999999999999999999999999999764 678999999999999999999999999999999999999
Q ss_pred cCC
Q 022981 81 HGG 83 (289)
Q Consensus 81 ~~~ 83 (289)
...
T Consensus 91 ~~~ 93 (103)
T 2dnm_A 91 RYG 93 (103)
T ss_dssp SSC
T ss_pred CcC
Confidence 866
No 49
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.82 E-value=7.1e-20 Score=138.86 Aligned_cols=80 Identities=19% Similarity=0.367 Sum_probs=75.4
Q ss_pred CCCCeEEEcCCCCCccHHHHH----HHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEE
Q 022981 4 RFSRTIYVGNLPSDIREYEVE----DLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~----~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 79 (289)
.++++|||+|||+.+++++|+ ++|++||+|.+|.+..++.++|||||+|.+.++|+.|+..|||..|.|+.|.|.+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~ 106 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITF 106 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEE
Confidence 678999999999999999876 6999999999999988888999999999999999999999999999999999999
Q ss_pred ccCC
Q 022981 80 AHGG 83 (289)
Q Consensus 80 ~~~~ 83 (289)
+...
T Consensus 107 a~~~ 110 (127)
T 2a3j_A 107 SETP 110 (127)
T ss_dssp CCCC
T ss_pred ccCc
Confidence 9865
No 50
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=8e-20 Score=132.01 Aligned_cols=81 Identities=25% Similarity=0.372 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEE-EEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEE
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDI-ELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v-~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 79 (289)
.++++|||+|||+++++++|+++|++||.|..| .|..+ +.++|||||+|.+.++|++|+..|||..|.|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 578999999999999999999999999999999 88653 67899999999999999999999999999999999999
Q ss_pred ccCCC
Q 022981 80 AHGGS 84 (289)
Q Consensus 80 ~~~~~ 84 (289)
+.+..
T Consensus 83 a~~~~ 87 (96)
T 1x5t_A 83 AFKKD 87 (96)
T ss_dssp SCCCC
T ss_pred ecccC
Confidence 98763
No 51
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.82 E-value=7.9e-20 Score=128.98 Aligned_cols=78 Identities=32% Similarity=0.551 Sum_probs=73.3
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.+.++|||+|||+++++++|+++|++||+|..|.+.. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 6889999999999999999999999999999999954 4667999999999999999999999999999999999997
Q ss_pred c
Q 022981 81 H 81 (289)
Q Consensus 81 ~ 81 (289)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 52
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.4e-19 Score=131.32 Aligned_cols=81 Identities=27% Similarity=0.485 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC-CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccC
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 82 (289)
.+.++|||+|||+++++++|+++|++||.|..|.|+.+ ..++|||||+|.+.++|++|+..||+..|.|+.|.|.++.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 67899999999999999999999999999999999765 35789999999999999999999999999999999999987
Q ss_pred CC
Q 022981 83 GS 84 (289)
Q Consensus 83 ~~ 84 (289)
..
T Consensus 93 ~~ 94 (103)
T 2cq3_A 93 RV 94 (103)
T ss_dssp SC
T ss_pred CC
Confidence 63
No 53
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.82 E-value=2.5e-19 Score=133.89 Aligned_cols=81 Identities=28% Similarity=0.446 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.+.++|||+|||+++++++|+++|++||.|..|.|+. ++.++|||||+|.+.++|++||..|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 5788999999999999999999999999999999965 4677899999999999999999999999999999999999
Q ss_pred cCCC
Q 022981 81 HGGS 84 (289)
Q Consensus 81 ~~~~ 84 (289)
....
T Consensus 93 ~~~~ 96 (115)
T 2dgo_A 93 TRKP 96 (115)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 8764
No 54
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=8.7e-20 Score=133.63 Aligned_cols=82 Identities=23% Similarity=0.324 Sum_probs=76.4
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC-CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
..+.++|||+|||+++|+++|+++|++||.|..|.|..+ +.++|||||+|.+.++|++|+..||+..|.|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 467899999999999999999999999999999999654 6778999999999999999999999999999999999998
Q ss_pred CCC
Q 022981 82 GGS 84 (289)
Q Consensus 82 ~~~ 84 (289)
+..
T Consensus 92 ~~~ 94 (103)
T 2d9p_A 92 RKE 94 (103)
T ss_dssp SCC
T ss_pred ccc
Confidence 763
No 55
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=130.83 Aligned_cols=78 Identities=21% Similarity=0.414 Sum_probs=73.5
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.+.++|||+|||+++++++|+++|++||+|..|.+..+ +.++|||||+|.+.++|++|++.||+..|.|+.|.|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 67889999999999999999999999999999999764 678999999999999999999999999999999999997
Q ss_pred c
Q 022981 81 H 81 (289)
Q Consensus 81 ~ 81 (289)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 56
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.81 E-value=3.4e-20 Score=134.28 Aligned_cols=83 Identities=29% Similarity=0.500 Sum_probs=76.1
Q ss_pred CCCCCCCeEEEcCCCCCccHHHHH----HHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEE
Q 022981 1 MSGRFSRTIYVGNLPSDIREYEVE----DLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (289)
Q Consensus 1 m~~~~~~~l~V~nLp~~~t~~~L~----~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 76 (289)
|...++++|||+|||+++++++|+ ++|++||.|..|.+..++.++|||||+|.+.++|+.|+..|||..|.|+.|.
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 456899999999999999999999 9999999999999976667789999999999999999999999999999999
Q ss_pred EEEccCC
Q 022981 77 VELAHGG 83 (289)
Q Consensus 77 v~~~~~~ 83 (289)
|.++.+.
T Consensus 83 v~~a~~~ 89 (97)
T 1nu4_A 83 IQYAKTD 89 (97)
T ss_dssp EEECSSC
T ss_pred EEEccCC
Confidence 9999865
No 57
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.7e-19 Score=132.46 Aligned_cols=80 Identities=29% Similarity=0.399 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.+.++|||+|||+++++++|+++|++||+|..|.|.. ++.++|||||+|.+.++|++|+..||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 6789999999999999999999999999999999966 4678999999999999999999999999999999999999
Q ss_pred cCC
Q 022981 81 HGG 83 (289)
Q Consensus 81 ~~~ 83 (289)
.+.
T Consensus 93 ~~~ 95 (105)
T 1x5u_A 93 SAH 95 (105)
T ss_dssp TTT
T ss_pred CCC
Confidence 866
No 58
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=8.8e-20 Score=136.17 Aligned_cols=79 Identities=20% Similarity=0.293 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCC--ceeCCceEEEEEc
Q 022981 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG--YNFDGCRLRVELA 80 (289)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~v~~~ 80 (289)
..++++|||+|||+++|+++|+++|++||.|.+|.|+.+ +|||||+|++.++|++|++.|++ ..|.|+.|.|.++
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~---kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG---GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 468899999999999999999999999999999999865 79999999999999999998874 6899999999999
Q ss_pred cCCC
Q 022981 81 HGGS 84 (289)
Q Consensus 81 ~~~~ 84 (289)
+...
T Consensus 105 ~~k~ 108 (119)
T 2ad9_A 105 NHKE 108 (119)
T ss_dssp SSSS
T ss_pred cCCC
Confidence 8663
No 59
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.6e-19 Score=132.21 Aligned_cols=78 Identities=18% Similarity=0.198 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCc--eeCCceEEEEEcc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY--NFDGCRLRVELAH 81 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~v~~~~ 81 (289)
.|+++|||+|||+++++++|+++|++||.|..|.|+.+ +|||||+|.+.++|++|++.|++. .|.|+.|.|.++.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF---KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 67899999999999999999999999999999998754 899999999999999999988654 5899999999998
Q ss_pred CCC
Q 022981 82 GGS 84 (289)
Q Consensus 82 ~~~ 84 (289)
...
T Consensus 90 ~~~ 92 (104)
T 1wex_A 90 SKR 92 (104)
T ss_dssp SSS
T ss_pred Ccc
Confidence 663
No 60
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=3.4e-19 Score=132.91 Aligned_cols=80 Identities=19% Similarity=0.256 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC--CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
.+.++|||+|||+++++++|+++|++||.|..|.|..+ +.++|||||+|.+.++|++|+..||+..|.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 67899999999999999999999999999999999654 5678999999999999999999999999999999999998
Q ss_pred CC
Q 022981 82 GG 83 (289)
Q Consensus 82 ~~ 83 (289)
..
T Consensus 93 ~~ 94 (114)
T 2do0_A 93 RA 94 (114)
T ss_dssp CC
T ss_pred cC
Confidence 55
No 61
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=9.9e-20 Score=133.35 Aligned_cols=81 Identities=33% Similarity=0.512 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.+.++|||+|||+++++++|+++|++||+|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 5789999999999999999999999999999999965 4677899999999999999999999999999999999999
Q ss_pred cCCC
Q 022981 81 HGGS 84 (289)
Q Consensus 81 ~~~~ 84 (289)
.+..
T Consensus 93 ~~~~ 96 (103)
T 2cq0_A 93 KPST 96 (103)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8763
No 62
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-19 Score=132.48 Aligned_cols=80 Identities=34% Similarity=0.545 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.+.++|||+|||+++++++|+++|++||+|..|.|..+ +.++|||||+|.+.++|++|++.||+..|.|+.|.|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 68899999999999999999999999999999999764 568999999999999999999999999999999999999
Q ss_pred cCC
Q 022981 81 HGG 83 (289)
Q Consensus 81 ~~~ 83 (289)
.+.
T Consensus 90 ~~~ 92 (102)
T 1x5s_A 90 GKS 92 (102)
T ss_dssp ECC
T ss_pred CCC
Confidence 876
No 63
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.81 E-value=9.3e-20 Score=129.19 Aligned_cols=80 Identities=29% Similarity=0.434 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.+.++|||+|||+++++++|+++|++||.|..|.+.. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 5678999999999999999999999999999999965 4677899999999999999999999999999999999999
Q ss_pred cCC
Q 022981 81 HGG 83 (289)
Q Consensus 81 ~~~ 83 (289)
.+.
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 754
No 64
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=131.65 Aligned_cols=80 Identities=23% Similarity=0.433 Sum_probs=74.9
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC--CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
.+.++|||+|||+++++++|+++|++||+|..|.|..+ +.++|||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 56889999999999999999999999999999999654 5678999999999999999999999999999999999998
Q ss_pred CC
Q 022981 82 GG 83 (289)
Q Consensus 82 ~~ 83 (289)
+.
T Consensus 95 ~~ 96 (100)
T 2do4_A 95 SG 96 (100)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 65
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.81 E-value=1.1e-19 Score=127.55 Aligned_cols=78 Identities=22% Similarity=0.402 Sum_probs=72.9
Q ss_pred CCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccC
Q 022981 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (289)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 82 (289)
+.+|||+|||+++++++|+++|++||+|..+.+.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 46899999999999999999999999999999964 467799999999999999999999999999999999999986
Q ss_pred C
Q 022981 83 G 83 (289)
Q Consensus 83 ~ 83 (289)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 5
No 66
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.81 E-value=1.4e-19 Score=135.31 Aligned_cols=81 Identities=21% Similarity=0.512 Sum_probs=75.4
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.+.++|||+|||+++++++|+++|++||.|..|+|+. ++.++|||||+|.+.++|++||..||+..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 5678999999999999999999999999999999965 4677899999999999999999999999999999999999
Q ss_pred cCCC
Q 022981 81 HGGS 84 (289)
Q Consensus 81 ~~~~ 84 (289)
.+..
T Consensus 103 ~~~~ 106 (115)
T 2cpz_A 103 RSKN 106 (115)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 8763
No 67
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=128.16 Aligned_cols=80 Identities=25% Similarity=0.486 Sum_probs=73.8
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCC---C-CCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEE
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP---R-PPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~---~-~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 79 (289)
...++|||+|||+++++++|+++|++||.|..|.+..+. . ++|||||+|.+.++|++|+..|||..|.|+.|.|.+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 467899999999999999999999999999999996543 2 789999999999999999999999999999999999
Q ss_pred ccCC
Q 022981 80 AHGG 83 (289)
Q Consensus 80 ~~~~ 83 (289)
+.+.
T Consensus 82 a~~~ 85 (88)
T 4a8x_A 82 VLAP 85 (88)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 9765
No 68
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3e-19 Score=129.98 Aligned_cols=77 Identities=17% Similarity=0.221 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHh--CCceeCCceEEEEEcc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR--DGYNFDGCRLRVELAH 81 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v~~~~ 81 (289)
.++++|||+|||+++++++|+++|++||.|.+|.|+.+ +|||||+|.+.++|+.|+..| ++..|.|+.|.|.++.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG---KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 68899999999999999999999999999999998765 899999999999999999977 5678999999999998
Q ss_pred CC
Q 022981 82 GG 83 (289)
Q Consensus 82 ~~ 83 (289)
..
T Consensus 90 ~~ 91 (101)
T 2cq1_A 90 HK 91 (101)
T ss_dssp CS
T ss_pred cc
Confidence 65
No 69
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1e-19 Score=131.15 Aligned_cols=79 Identities=30% Similarity=0.444 Sum_probs=74.1
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.+.++|||+|||+++++++|+++|++||+|..|.+..+ +.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 67889999999999999999999999999999999654 577899999999999999999999999999999999998
Q ss_pred cC
Q 022981 81 HG 82 (289)
Q Consensus 81 ~~ 82 (289)
+.
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 74
No 70
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.81 E-value=1.9e-19 Score=132.29 Aligned_cols=81 Identities=25% Similarity=0.307 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC--CCCCceEEEEEccHHHHHHHHHHhCCceeCC---ceEEEE
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDG---CRLRVE 78 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~v~ 78 (289)
.+.++|||+|||+++++++|+++|++||.|..|.|..+ +.++|||||+|.+.++|++|+..|||..|.| +.|.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 56899999999999999999999999999999999654 5678999999999999999999999999998 999999
Q ss_pred EccCCC
Q 022981 79 LAHGGS 84 (289)
Q Consensus 79 ~~~~~~ 84 (289)
++....
T Consensus 93 ~a~~~~ 98 (105)
T 2dnh_A 93 FADTDK 98 (105)
T ss_dssp ESCSSC
T ss_pred ECccCc
Confidence 998763
No 71
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.4e-19 Score=131.54 Aligned_cols=79 Identities=24% Similarity=0.400 Sum_probs=73.8
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC----CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEE
Q 022981 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP----PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (289)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~----~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 78 (289)
..+.++|||+|||+++++++|+++|++|| |..|.|+.+ +.++|||||+|.+.++|++|| .||+..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 36789999999999999999999999999 999999765 667999999999999999999 899999999999999
Q ss_pred EccCC
Q 022981 79 LAHGG 83 (289)
Q Consensus 79 ~~~~~ 83 (289)
++.+.
T Consensus 90 ~a~~~ 94 (104)
T 1wi8_A 90 VADQA 94 (104)
T ss_dssp ECCCC
T ss_pred EccCC
Confidence 99876
No 72
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=3.2e-19 Score=131.51 Aligned_cols=80 Identities=25% Similarity=0.417 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc----CCCCCceEEEEEccHHHHHHHHHHh-CCceeCCceEEEE
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI----PPRPPCYCFVEFENARDAEDAIRGR-DGYNFDGCRLRVE 78 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~----~~~~~g~afV~f~~~~~A~~A~~~l-~g~~~~g~~l~v~ 78 (289)
.+.++|||+|||+++++++|+++|++||.|..|.|+. ++.++|||||+|.+.++|++||..| |+..|.|+.|.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 6789999999999999999999999999999999954 4577999999999999999999999 9999999999999
Q ss_pred EccCC
Q 022981 79 LAHGG 83 (289)
Q Consensus 79 ~~~~~ 83 (289)
++.+.
T Consensus 93 ~a~~~ 97 (107)
T 2cph_A 93 WADSE 97 (107)
T ss_dssp ECCCC
T ss_pred eCCCC
Confidence 99876
No 73
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=3.2e-19 Score=132.37 Aligned_cols=80 Identities=20% Similarity=0.410 Sum_probs=75.4
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhC------CceeCCce
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRD------GYNFDGCR 74 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~------g~~~~g~~ 74 (289)
.+.++|||+|||+++++++|+++|++||+|..|.|+.+ +.++|||||+|.+.++|++||..|| +..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 57889999999999999999999999999999999754 5789999999999999999999999 99999999
Q ss_pred EEEEEccCC
Q 022981 75 LRVELAHGG 83 (289)
Q Consensus 75 l~v~~~~~~ 83 (289)
|.|.++.+.
T Consensus 93 l~v~~a~~~ 101 (111)
T 1x4h_A 93 LKVDLAVTR 101 (111)
T ss_dssp EEEECCCCC
T ss_pred EEEEECCCC
Confidence 999999876
No 74
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=4.3e-19 Score=127.21 Aligned_cols=76 Identities=34% Similarity=0.610 Sum_probs=72.3
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccC
Q 022981 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (289)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 82 (289)
..+.++|||+|||+++++++|+++|++||.|..|.+. ++||||+|.+.++|++|+..||+..|.|+.|.|.++.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-----SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 4788999999999999999999999999999999997 56999999999999999999999999999999999987
Q ss_pred C
Q 022981 83 G 83 (289)
Q Consensus 83 ~ 83 (289)
.
T Consensus 82 ~ 82 (92)
T 2dgt_A 82 R 82 (92)
T ss_dssp C
T ss_pred C
Confidence 6
No 75
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=5.5e-19 Score=130.53 Aligned_cols=76 Identities=21% Similarity=0.243 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCC-----ceEEEE
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG-----CRLRVE 78 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~~l~v~ 78 (289)
...++|||+|||+++|+++|+++|++||+|..|.|+.+ |||||+|.+.++|++||+.||+..|.| +.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 56789999999999999999999999999999999866 899999999999999999999999999 999999
Q ss_pred EccCC
Q 022981 79 LAHGG 83 (289)
Q Consensus 79 ~~~~~ 83 (289)
++.+.
T Consensus 89 ~a~~~ 93 (108)
T 1x4c_A 89 VDGPR 93 (108)
T ss_dssp ESSCC
T ss_pred eCCCC
Confidence 99875
No 76
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=130.34 Aligned_cols=80 Identities=25% Similarity=0.406 Sum_probs=74.3
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC--CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
..+.++|||+|||+.+++++|+++|++||+|..|.|..+ +.++|||||+|.+.++|++|++.||+..|.|+.|.|.++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 367899999999999999999999999999999999654 567899999999999999999999999999999999998
Q ss_pred cC
Q 022981 81 HG 82 (289)
Q Consensus 81 ~~ 82 (289)
+.
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 77
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.81 E-value=1.9e-19 Score=128.94 Aligned_cols=81 Identities=26% Similarity=0.379 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc-CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI-PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
..+.++|||+|||+++++++|+++|++||+|..|.|.. ++.++|||||+|.+.++|++|+..||+..|.|+.|.|.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 47889999999999999999999999999999999965 46778999999999999999999999999999999999998
Q ss_pred CC
Q 022981 82 GG 83 (289)
Q Consensus 82 ~~ 83 (289)
+.
T Consensus 85 ~~ 86 (92)
T 2dgv_A 85 NA 86 (92)
T ss_dssp CC
T ss_pred CC
Confidence 66
No 78
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.80 E-value=2e-19 Score=141.77 Aligned_cols=81 Identities=33% Similarity=0.481 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.+.++|||+|||+++|+++|+++|++||+|..|.|+.+ +.++|||||+|.+.++|++||..||+..|.|+.|.|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 47899999999999999999999999999999999654 567899999999999999999999999999999999999
Q ss_pred cCCC
Q 022981 81 HGGS 84 (289)
Q Consensus 81 ~~~~ 84 (289)
.+..
T Consensus 117 ~~~~ 120 (156)
T 1h2v_Z 117 AGFK 120 (156)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8763
No 79
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.9e-19 Score=126.89 Aligned_cols=75 Identities=32% Similarity=0.554 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCC
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (289)
.+.++|||+|||+++|+++|+++|++||.|..|.+. ++||||+|.+.++|++|+..|||..|.|+.|.|.++.+.
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-----KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 678999999999999999999999999999999997 569999999999999999999999999999999999866
No 80
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.4e-19 Score=127.16 Aligned_cols=76 Identities=33% Similarity=0.621 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccC
Q 022981 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (289)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 82 (289)
..+.++|||+|||+++++++|+++|++||+|..|.+. +|||||+|.+.++|++|+..||+..|.|+.|.|.++.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 3678999999999999999999999999999999998 78999999999999999999999999999999999987
Q ss_pred C
Q 022981 83 G 83 (289)
Q Consensus 83 ~ 83 (289)
.
T Consensus 80 ~ 80 (90)
T 2dnq_A 80 K 80 (90)
T ss_dssp C
T ss_pred C
Confidence 6
No 81
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3.2e-19 Score=129.16 Aligned_cols=77 Identities=22% Similarity=0.429 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeC--CceEEEEEcc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD--GCRLRVELAH 81 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~v~~~~ 81 (289)
.++++|||+|||+++++++|+++|++||+|..|.+..+ +|||||+|.+.++|++|++.||+..|. |+.|.|.++.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS---SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC---CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 67899999999999999999999999999999999754 789999999999999999999999999 9999999998
Q ss_pred CC
Q 022981 82 GG 83 (289)
Q Consensus 82 ~~ 83 (289)
+.
T Consensus 92 ~~ 93 (97)
T 1why_A 92 SG 93 (97)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 82
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.80 E-value=3.3e-19 Score=131.18 Aligned_cols=81 Identities=15% Similarity=0.283 Sum_probs=75.5
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCcee---CCceEE
Q 022981 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNF---DGCRLR 76 (289)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~ 76 (289)
..+.++|||+|||+++++++|+++|++||+|..|.|+.+ +.++|||||+|.+.++|++|+..||+..+ .|+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 367899999999999999999999999999999999764 67899999999999999999999999988 899999
Q ss_pred EEEccCC
Q 022981 77 VELAHGG 83 (289)
Q Consensus 77 v~~~~~~ 83 (289)
|.++...
T Consensus 90 v~~a~~~ 96 (106)
T 2dgp_A 90 VKPADSE 96 (106)
T ss_dssp EEECCCC
T ss_pred EEECCcc
Confidence 9999866
No 83
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.5e-19 Score=133.07 Aligned_cols=80 Identities=24% Similarity=0.422 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.++++|||+|||+++++++|+++|++||+|..|.|..+ +.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 46788999999999999999999999999999999654 677899999999999999999999999999999999999
Q ss_pred cCC
Q 022981 81 HGG 83 (289)
Q Consensus 81 ~~~ 83 (289)
.+.
T Consensus 101 ~~~ 103 (106)
T 1p27_B 101 FVR 103 (106)
T ss_dssp EES
T ss_pred cCC
Confidence 865
No 84
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.6e-19 Score=131.18 Aligned_cols=82 Identities=22% Similarity=0.450 Sum_probs=76.0
Q ss_pred CCCCCCeEEEcCCCCCccHHHHHHHHhhcCCee-EEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCce---
Q 022981 2 SGRFSRTIYVGNLPSDIREYEVEDLFYKYGRIL-DIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR--- 74 (289)
Q Consensus 2 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~-~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~--- 74 (289)
+..+.++|||+|||+++++++|+++|++||+|. .|.|+.+ +.++|||||+|.+.++|++|++.|||..|.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 457899999999999999999999999999999 9999654 577899999999999999999999999999999
Q ss_pred -EEEEEccCC
Q 022981 75 -LRVELAHGG 83 (289)
Q Consensus 75 -l~v~~~~~~ 83 (289)
|+|.++.+.
T Consensus 85 ~l~v~~a~~~ 94 (99)
T 2div_A 85 RFKLNYATYS 94 (99)
T ss_dssp ECCEEETTCC
T ss_pred eEEEeecCCC
Confidence 999999865
No 85
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.8e-19 Score=131.83 Aligned_cols=78 Identities=17% Similarity=0.361 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC--CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
.+.++|||+|||+++|+++|.++|++||+|.+|.|+.+ +.++|||||+|.+.++|++||. +++..|.|+.|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 46789999999999999999999999999999999764 6789999999999999999999 99999999999999976
Q ss_pred C
Q 022981 82 G 82 (289)
Q Consensus 82 ~ 82 (289)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 86
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.79 E-value=3.7e-19 Score=131.85 Aligned_cols=80 Identities=23% Similarity=0.386 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.+.++|||+|||+++++++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 5678899999999999999999999999999999965 4677999999999999999999999999999999999999
Q ss_pred cCC
Q 022981 81 HGG 83 (289)
Q Consensus 81 ~~~ 83 (289)
.+.
T Consensus 104 ~~~ 106 (110)
T 1oo0_B 104 FVK 106 (110)
T ss_dssp EES
T ss_pred ccC
Confidence 865
No 87
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.6e-19 Score=131.98 Aligned_cols=80 Identities=26% Similarity=0.421 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCee--------EEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCC
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRIL--------DIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~--------~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 72 (289)
.+.++|||+|||+++|+++|+++|++||.|. .|.|..+ +.++|||||+|.+.++|++||..|||..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 5789999999999999999999999999998 6888654 6789999999999999999999999999999
Q ss_pred ceEEEEEccCC
Q 022981 73 CRLRVELAHGG 83 (289)
Q Consensus 73 ~~l~v~~~~~~ 83 (289)
+.|.|.++...
T Consensus 93 ~~l~V~~a~~~ 103 (113)
T 2cpe_A 93 SKLKVSLARKK 103 (113)
T ss_dssp EECEEECSSCC
T ss_pred CEEEEEECCCC
Confidence 99999999876
No 88
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.9e-19 Score=133.72 Aligned_cols=80 Identities=23% Similarity=0.359 Sum_probs=74.1
Q ss_pred CCCCeEEEcCCCCCccHHHHH---HHHhhcCCeeEEEEccCC------CCCceEEEEEccHHHHHHHHHHhCCceeCCce
Q 022981 4 RFSRTIYVGNLPSDIREYEVE---DLFYKYGRILDIELKIPP------RPPCYCFVEFENARDAEDAIRGRDGYNFDGCR 74 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~---~~F~~~G~i~~v~~~~~~------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 74 (289)
.+.++|||+|||+++++++|. ++|++||+|..|.|..+. .++|||||+|.+.++|++||+.|||..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 567899999999999999999 999999999999996542 56699999999999999999999999999999
Q ss_pred EEEEEccCC
Q 022981 75 LRVELAHGG 83 (289)
Q Consensus 75 l~v~~~~~~ 83 (289)
|.|.++.+.
T Consensus 93 l~V~~a~~k 101 (111)
T 2cpi_A 93 LKASLGTTK 101 (111)
T ss_dssp EEEESCCCC
T ss_pred EEEEecccc
Confidence 999999866
No 89
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.79 E-value=2.3e-19 Score=136.76 Aligned_cols=80 Identities=30% Similarity=0.460 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.++++|||+|||+++++++|+++|++||+|..|.|..+ +.++|||||+|.+.++|++||..|||..|.|+.|.|.++
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 67899999999999999999999999999999999754 678999999999999999999999999999999999999
Q ss_pred cCC
Q 022981 81 HGG 83 (289)
Q Consensus 81 ~~~ 83 (289)
.+.
T Consensus 124 ~~~ 126 (129)
T 2kxn_B 124 ITK 126 (129)
T ss_dssp SSS
T ss_pred cCC
Confidence 865
No 90
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.79 E-value=5.5e-19 Score=129.37 Aligned_cols=79 Identities=28% Similarity=0.496 Sum_probs=73.3
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEE
Q 022981 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (289)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 79 (289)
..+.++|||+|||+++++++|+++|++|| |..|.|+.+ +.++|||||+|.+.++|++|| .||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 36789999999999999999999999997 999999654 577899999999999999999 7999999999999999
Q ss_pred ccCC
Q 022981 80 AHGG 83 (289)
Q Consensus 80 ~~~~ 83 (289)
+.+.
T Consensus 90 a~~~ 93 (103)
T 2dng_A 90 AEGR 93 (103)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 9866
No 91
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.79 E-value=3.6e-19 Score=131.24 Aligned_cols=78 Identities=22% Similarity=0.393 Sum_probs=73.2
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc--CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
.+.++|||+|||+.+++++|+++|++||+|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 5688999999999999999999999999999999965 46778999999999999999999999999999999999985
No 92
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=9.5e-19 Score=129.44 Aligned_cols=77 Identities=22% Similarity=0.414 Sum_probs=73.4
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCC
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (289)
.+.++|||+|||+++++++|+++|++||.|..|.|..+ +|||||+|.+.++|++|+..|||..|.|+.|.|.++...
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 56789999999999999999999999999999999876 899999999999999999999999999999999999876
No 93
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.2e-19 Score=132.05 Aligned_cols=80 Identities=28% Similarity=0.494 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC-CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccC
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 82 (289)
.+.++|||+|||+++++++|+++|++||.|..|.+..+ +.++|||||+|.+.++|++|+..|||..|.|+.|.|.++.+
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 67899999999999999999999999999999999764 45789999999999999999999999999999999999976
Q ss_pred C
Q 022981 83 G 83 (289)
Q Consensus 83 ~ 83 (289)
.
T Consensus 107 ~ 107 (109)
T 2err_A 107 R 107 (109)
T ss_dssp S
T ss_pred C
Confidence 4
No 94
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.79 E-value=3.8e-19 Score=131.53 Aligned_cols=79 Identities=16% Similarity=0.119 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcC-CeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccC
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G-~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 82 (289)
....+|||+|||+++++++|+++|++|| +|..+.+.. ..++|||||+|.+.++|++||+.|||..|.|+.|.|.++..
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~-~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT-RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS-CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc-CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 4567999999999999999999999999 899998853 35799999999999999999999999999999999999875
Q ss_pred C
Q 022981 83 G 83 (289)
Q Consensus 83 ~ 83 (289)
.
T Consensus 105 ~ 105 (111)
T 2jvr_A 105 P 105 (111)
T ss_dssp -
T ss_pred C
Confidence 4
No 95
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.79 E-value=3.1e-19 Score=133.96 Aligned_cols=78 Identities=23% Similarity=0.543 Sum_probs=72.8
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.+.++|||+|||+++++++|+++|++||.|..|.|..+ +.++|||||+|.+.++|++|++.|||..|.|+.|+|+++
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 56789999999999999999999999999999999754 678999999999999999999999999999999999987
Q ss_pred c
Q 022981 81 H 81 (289)
Q Consensus 81 ~ 81 (289)
+
T Consensus 118 k 118 (118)
T 2khc_A 118 K 118 (118)
T ss_dssp -
T ss_pred C
Confidence 4
No 96
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.79 E-value=4.9e-20 Score=131.62 Aligned_cols=77 Identities=14% Similarity=0.180 Sum_probs=68.0
Q ss_pred CeEEEcCCCCCccHHHHHHHHhhcC--CeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 7 RTIYVGNLPSDIREYEVEDLFYKYG--RILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G--~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
.+|||+|||+++|+++|+++|++|| .|.+|.++. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 999999965 46889999999999999999999999999999999999998
Q ss_pred CC
Q 022981 82 GG 83 (289)
Q Consensus 82 ~~ 83 (289)
+.
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 66
No 97
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.79 E-value=1.9e-19 Score=131.14 Aligned_cols=79 Identities=24% Similarity=0.360 Sum_probs=73.6
Q ss_pred CCCCeEEEcCCCC------CccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCC-c
Q 022981 4 RFSRTIYVGNLPS------DIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG-C 73 (289)
Q Consensus 4 ~~~~~l~V~nLp~------~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~ 73 (289)
..+++|||+|||+ ++++++|+++|++||.|..|.|+. ++.++|||||+|.+.++|++|++.|||..|.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 4578999999999 999999999999999999999964 36789999999999999999999999999999 9
Q ss_pred eEEEEEccC
Q 022981 74 RLRVELAHG 82 (289)
Q Consensus 74 ~l~v~~~~~ 82 (289)
.|.|.++.+
T Consensus 84 ~l~V~~a~~ 92 (100)
T 3ns6_A 84 RLFLYTMKD 92 (100)
T ss_dssp BCEEEESHH
T ss_pred EEEEEECch
Confidence 999999874
No 98
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.79 E-value=3.4e-19 Score=129.54 Aligned_cols=78 Identities=28% Similarity=0.356 Sum_probs=72.9
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeE--------EEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCC
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILD--------IELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~--------v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 72 (289)
.+.++|||+|||+++++++|+++|++||.|.. |.+..+ +.++|||||+|.+.++|++|++.|||..|.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 67899999999999999999999999999999 888653 6779999999999999999999999999999
Q ss_pred ceEEEEEcc
Q 022981 73 CRLRVELAH 81 (289)
Q Consensus 73 ~~l~v~~~~ 81 (289)
+.|.|.+++
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999974
No 99
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=5e-19 Score=124.82 Aligned_cols=75 Identities=28% Similarity=0.477 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHh-CCceeCCceEEEEEcc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR-DGYNFDGCRLRVELAH 81 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l-~g~~~~g~~l~v~~~~ 81 (289)
.+.++|||+|||+++++++|+++|++||+|..|.+..+ +|||||+|.+.++|++|+..| ++..+.|+.|.|.+++
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~---kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR---QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG---GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC---CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 67889999999999999999999999999999999864 799999999999999999999 9999999999999974
No 100
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.3e-19 Score=130.19 Aligned_cols=79 Identities=13% Similarity=0.221 Sum_probs=72.6
Q ss_pred CCCCCCeEEE--cCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCcee-----CCce
Q 022981 2 SGRFSRTIYV--GNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF-----DGCR 74 (289)
Q Consensus 2 ~~~~~~~l~V--~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-----~g~~ 74 (289)
+..|+++||| +||+.++++++|+++|++||.|..|.|..+ +|||||+|.+.++|++|++.|||..| .|++
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~---rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN---KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT---CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 4578999999 779999999999999999999999988643 79999999999999999999999988 7899
Q ss_pred EEEEEccCC
Q 022981 75 LRVELAHGG 83 (289)
Q Consensus 75 l~v~~~~~~ 83 (289)
|.|.++...
T Consensus 98 l~v~~a~~~ 106 (114)
T 2cq2_A 98 LYLNFVEKV 106 (114)
T ss_dssp CEEEEESCC
T ss_pred EEEEecccC
Confidence 999999865
No 101
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.79 E-value=3.5e-19 Score=131.59 Aligned_cols=80 Identities=26% Similarity=0.468 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.+.++|||+|||+.+++++|+++|++||+|..|.+.. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 6788999999999999999999999999999999964 4677899999999999999999999999999999999999
Q ss_pred cCC
Q 022981 81 HGG 83 (289)
Q Consensus 81 ~~~ 83 (289)
.+.
T Consensus 104 ~~k 106 (108)
T 2jrs_A 104 TER 106 (108)
T ss_dssp CSS
T ss_pred ccC
Confidence 864
No 102
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=6.5e-19 Score=127.99 Aligned_cols=77 Identities=32% Similarity=0.465 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCC
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (289)
.+.++|||+|||+++++++|+++|++||+|..|.+..+ +|||||+|.+.++|++|++.|||..|.|+.|.|.++.+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~---kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD---KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT---TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC---CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 57789999999999999999999999999999999754 899999999999999999999999999999999999876
No 103
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.79 E-value=1.3e-18 Score=134.39 Aligned_cols=80 Identities=31% Similarity=0.586 Sum_probs=74.9
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.+.++|||+|||+++++++|+++|+.||+|..|.|+.+ +.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 56789999999999999999999999999999999653 567999999999999999999999999999999999999
Q ss_pred cCC
Q 022981 81 HGG 83 (289)
Q Consensus 81 ~~~ 83 (289)
...
T Consensus 120 ~~~ 122 (139)
T 1u6f_A 120 ASG 122 (139)
T ss_dssp SCC
T ss_pred CCC
Confidence 876
No 104
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.2e-19 Score=133.88 Aligned_cols=78 Identities=26% Similarity=0.326 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCCC-ccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhC--CceeCCceEEEEE
Q 022981 3 GRFSRTIYVGNLPSD-IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD--GYNFDGCRLRVEL 79 (289)
Q Consensus 3 ~~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--g~~~~g~~l~v~~ 79 (289)
..++++|||+|||++ +++++|+++|++||.|.+|.|.. .+|||||+|++.++|+.|+..|+ +..|.|+.|.|.+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR---MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET---TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec---CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 478999999999998 99999999999999999999974 48999999999999999999885 4569999999999
Q ss_pred ccCC
Q 022981 80 AHGG 83 (289)
Q Consensus 80 ~~~~ 83 (289)
+...
T Consensus 99 a~~~ 102 (112)
T 1x4f_A 99 SEKY 102 (112)
T ss_dssp ECSC
T ss_pred Cccc
Confidence 9865
No 105
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=6.7e-19 Score=129.10 Aligned_cols=82 Identities=18% Similarity=0.304 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHHhh-cCCeeEEEEcc--CCCCCceEEEEEccHHHHHHHHHHhCCce-eCCceEEEE
Q 022981 3 GRFSRTIYVGNLPSDIREYEVEDLFYK-YGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYN-FDGCRLRVE 78 (289)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~i~~v~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g~~l~v~ 78 (289)
..+.++|||+|||+++|+++|+++|++ ||.|..|.|+. ++.++|||||+|.+.++|++|+..||+.. |.|+.|.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 367899999999999999999999999 99999999965 46779999999999999999999999999 999999999
Q ss_pred EccCCC
Q 022981 79 LAHGGS 84 (289)
Q Consensus 79 ~~~~~~ 84 (289)
++....
T Consensus 86 ~a~~~~ 91 (104)
T 2dhg_A 86 VAIPKA 91 (104)
T ss_dssp BCCCCC
T ss_pred EccCCC
Confidence 998653
No 106
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.78 E-value=8.3e-19 Score=124.30 Aligned_cols=77 Identities=23% Similarity=0.461 Sum_probs=71.1
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEE
Q 022981 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (289)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 79 (289)
..+.++|||+|||+++++++|+++|++||.|..|.++. ++.++|||||+|.+.++|++|++ +++..|.|+.|.|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 36789999999999999999999999999999999965 36789999999999999999997 688999999999987
Q ss_pred c
Q 022981 80 A 80 (289)
Q Consensus 80 ~ 80 (289)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 107
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.78 E-value=1.2e-18 Score=126.12 Aligned_cols=75 Identities=25% Similarity=0.550 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCC-CccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccC
Q 022981 4 RFSRTIYVGNLPS-DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (289)
Q Consensus 4 ~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 82 (289)
.++++|||+|||+ ++++++|+++|++||.|..|.+. +|||||+|.+.++|++|+..|||..|.|+.|.|++++.
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 6789999999998 99999999999999999999985 89999999999999999999999999999999999875
Q ss_pred C
Q 022981 83 G 83 (289)
Q Consensus 83 ~ 83 (289)
.
T Consensus 95 ~ 95 (97)
T 2xnq_A 95 N 95 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 108
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.78 E-value=9.6e-19 Score=124.45 Aligned_cols=78 Identities=22% Similarity=0.395 Sum_probs=72.8
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
+.++|||+|||+++++++|+++|++||.|..|.+.. ++.++|||||+|.+.++|++|+ .|||..|.|+.|.|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 468999999999999999999999999999999964 4678999999999999999999 799999999999999998
Q ss_pred CC
Q 022981 82 GG 83 (289)
Q Consensus 82 ~~ 83 (289)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 109
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.78 E-value=5.8e-19 Score=134.02 Aligned_cols=80 Identities=24% Similarity=0.425 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.+.++|||+|||+++|+++|+++|++||.|..|.|+. ++.++|||||+|.+.++|++||+.|||..|.|+.|.|.++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 5678999999999999999999999999999999964 4677999999999999999999999999999999999999
Q ss_pred cCC
Q 022981 81 HGG 83 (289)
Q Consensus 81 ~~~ 83 (289)
...
T Consensus 100 ~~~ 102 (126)
T 3ex7_B 100 FVR 102 (126)
T ss_dssp EES
T ss_pred cCC
Confidence 866
No 110
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.6e-18 Score=128.16 Aligned_cols=82 Identities=21% Similarity=0.276 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHHhhcCC-eeEEEEc-cC---CCCCceEEEEEccHHHHHHHHHHhC--CceeCCceE
Q 022981 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGR-ILDIELK-IP---PRPPCYCFVEFENARDAEDAIRGRD--GYNFDGCRL 75 (289)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~-i~~v~~~-~~---~~~~g~afV~f~~~~~A~~A~~~l~--g~~~~g~~l 75 (289)
+.+.++|||+|||+++++++|+++|.+||. |..|.++ .+ +.++|||||+|.+.++|+.|+..|+ +..|.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 367899999999999999999999999998 9999986 33 4789999999999999999999996 589999999
Q ss_pred EEEEccCCC
Q 022981 76 RVELAHGGS 84 (289)
Q Consensus 76 ~v~~~~~~~ 84 (289)
.|.++.+..
T Consensus 85 ~V~~a~~~~ 93 (109)
T 2dis_A 85 AVDWAEPEI 93 (109)
T ss_dssp EEEESCSSC
T ss_pred EEEEcCCCC
Confidence 999998763
No 111
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.78 E-value=7.4e-19 Score=129.16 Aligned_cols=80 Identities=26% Similarity=0.411 Sum_probs=73.9
Q ss_pred CCCCeEEEcCCCCCc------cHHHHHHHHhhcCCeeEEEEcc-CCCCCceEEEEEccHHHHHHHHHHhCCceeCCc-eE
Q 022981 4 RFSRTIYVGNLPSDI------REYEVEDLFYKYGRILDIELKI-PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC-RL 75 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~------t~~~L~~~F~~~G~i~~v~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~l 75 (289)
...++|||+|||+.+ |+++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+ .|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 457899999999999 8899999999999999999863 568899999999999999999999999999998 99
Q ss_pred EEEEccCC
Q 022981 76 RVELAHGG 83 (289)
Q Consensus 76 ~v~~~~~~ 83 (289)
.|.++...
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99999755
No 112
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.1e-19 Score=131.34 Aligned_cols=80 Identities=21% Similarity=0.371 Sum_probs=73.4
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCe----eEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEE
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRI----LDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i----~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 79 (289)
.++++|||+|||+++|+++|+++|++||.| ..+.+. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 467999999999999999999999999998 555555 778899999999999999999999999999999999999
Q ss_pred ccCCC
Q 022981 80 AHGGS 84 (289)
Q Consensus 80 ~~~~~ 84 (289)
+....
T Consensus 102 a~~~~ 106 (115)
T 2cpx_A 102 GKNKK 106 (115)
T ss_dssp CCCCS
T ss_pred ccCCC
Confidence 98763
No 113
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.4e-18 Score=124.97 Aligned_cols=75 Identities=29% Similarity=0.421 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhc--CCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKY--GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~--G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
.+.++|||+|||+++++++|+++|++| |.|..|.+. +|||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578899999999999999999999999 999999876 7899999999999999999999999999999999998
Q ss_pred CC
Q 022981 82 GG 83 (289)
Q Consensus 82 ~~ 83 (289)
+.
T Consensus 88 ~~ 89 (99)
T 2cpd_A 88 PV 89 (99)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 114
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.78 E-value=9e-19 Score=129.33 Aligned_cols=75 Identities=27% Similarity=0.472 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCC
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (289)
.+.++|||+|||+++++++|+++|++||.|..|.+. +|||||+|.+.++|++|+..|||..|.|+.|.|.++...
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 678999999999999999999999999999999998 799999999999999999999999999999999999865
No 115
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.1e-19 Score=126.29 Aligned_cols=77 Identities=21% Similarity=0.317 Sum_probs=70.7
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHHhhcCC-eeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCC-ceeCCceEEEEEc
Q 022981 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGR-ILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG-YNFDGCRLRVELA 80 (289)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~-i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~v~~~ 80 (289)
..+.++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|++|+..||| ..|.|+.|.|.++
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 467899999999999999999999999999 6666663 379999999999999999999999 9999999999999
Q ss_pred cCC
Q 022981 81 HGG 83 (289)
Q Consensus 81 ~~~ 83 (289)
.+.
T Consensus 81 ~~~ 83 (93)
T 2cqh_A 81 VSK 83 (93)
T ss_dssp CCC
T ss_pred cCc
Confidence 876
No 116
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1e-18 Score=127.37 Aligned_cols=79 Identities=24% Similarity=0.325 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCC
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (289)
.+.++|||+|||+++++++|+++|++||.|.-+ ...++.++|||||+|.+.++|++||..||+..|.|+.|.|.++.+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~-~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFIKVP-QNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEEECC-BCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEE-ECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 578999999999999999999999999988221 1235678999999999999999999999999999999999999866
No 117
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=7.6e-19 Score=129.04 Aligned_cols=80 Identities=15% Similarity=0.282 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEE
Q 022981 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (289)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 79 (289)
..+.++|||+|||+++++++|+++|++||+|..|.|+.+ +.++|||||+|.+.++|++||.. ++..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 378899999999999999999999999999999999654 57789999999999999999997 99999999999999
Q ss_pred ccCC
Q 022981 80 AHGG 83 (289)
Q Consensus 80 ~~~~ 83 (289)
+.+.
T Consensus 92 a~~~ 95 (105)
T 2dh8_A 92 CTPR 95 (105)
T ss_dssp SCCS
T ss_pred ccCC
Confidence 9866
No 118
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.78 E-value=3.9e-19 Score=124.32 Aligned_cols=72 Identities=28% Similarity=0.469 Sum_probs=67.0
Q ss_pred CCeEEEcCCCCCc------cHHHHHHHHhhcCCeeEEEEcc-CCCCCceEEEEEccHHHHHHHHHHhCCceeCCc-eEEE
Q 022981 6 SRTIYVGNLPSDI------REYEVEDLFYKYGRILDIELKI-PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC-RLRV 77 (289)
Q Consensus 6 ~~~l~V~nLp~~~------t~~~L~~~F~~~G~i~~v~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~l~v 77 (289)
+++|||+|||+.+ ++++|+++|++||+|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+ .|.|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4799999999999 8899999999999999999863 578899999999999999999999999999999 8876
No 119
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.78 E-value=1.8e-18 Score=127.89 Aligned_cols=79 Identities=13% Similarity=0.264 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.+.++|||+|||+++++++|+++|++||.|..|.|..+ +.++|||||+|.+.++|++|+..+ +..|.|+.|.|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 57899999999999999999999999999999999764 678999999999999999999965 69999999999999
Q ss_pred cCC
Q 022981 81 HGG 83 (289)
Q Consensus 81 ~~~ 83 (289)
.+.
T Consensus 102 ~~~ 104 (109)
T 2rs2_A 102 FPR 104 (109)
T ss_dssp CCC
T ss_pred cCC
Confidence 865
No 120
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=6.7e-19 Score=127.23 Aligned_cols=75 Identities=25% Similarity=0.514 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCC-CccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccC
Q 022981 4 RFSRTIYVGNLPS-DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (289)
Q Consensus 4 ~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 82 (289)
.++++|||+|||+ ++++++|+++|++||+|..|.+. +|||||+|.+.++|+.|+..|||..+.|+.|.|.++..
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 6889999999998 99999999999999999999995 79999999999999999999999999999999999986
Q ss_pred C
Q 022981 83 G 83 (289)
Q Consensus 83 ~ 83 (289)
.
T Consensus 83 ~ 83 (96)
T 2kvi_A 83 N 83 (96)
T ss_dssp C
T ss_pred C
Confidence 5
No 121
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=6e-19 Score=130.97 Aligned_cols=77 Identities=26% Similarity=0.307 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCC
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (289)
+..++|||+|||+++++++|+++|++||.|..|.|.. .+|||||+|.+.++|++|+..|||..|.|+.|.|+|+...
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE---GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS---SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC---CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 4567999999999999999999999999999998874 4899999999999999999999999999999999999854
No 122
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.77 E-value=9.7e-19 Score=137.60 Aligned_cols=79 Identities=13% Similarity=0.202 Sum_probs=72.5
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcC--CeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEE
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYG--RILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G--~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 79 (289)
..++|||+|||+++|+++|+++|++|| .|.+|+|+. ++.++|||||+|.+.++|++||..|||..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 999999964 478899999999999999999999999999999999999
Q ss_pred ccCC
Q 022981 80 AHGG 83 (289)
Q Consensus 80 ~~~~ 83 (289)
+...
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8743
No 123
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=7e-19 Score=128.30 Aligned_cols=76 Identities=26% Similarity=0.467 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccC
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 82 (289)
...++|||+|||.++++++|+++|++||.|.+|.+. .++|||||+|.+.++|++|+..|||..|.|+.|.|.++++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY---PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe---cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 457899999999999999999999999999999997 4589999999999999999999999999999999999874
No 124
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.77 E-value=2.7e-18 Score=130.01 Aligned_cols=80 Identities=21% Similarity=0.369 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc--CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
.+.++|||+|||+++++++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 5678999999999999999999999999999999965 46789999999999999999999999999999999999998
Q ss_pred CC
Q 022981 82 GG 83 (289)
Q Consensus 82 ~~ 83 (289)
..
T Consensus 113 ~~ 114 (124)
T 2kt5_A 113 SQ 114 (124)
T ss_dssp CT
T ss_pred CC
Confidence 76
No 125
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.8e-19 Score=127.22 Aligned_cols=79 Identities=16% Similarity=0.283 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEE
Q 022981 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (289)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 79 (289)
..+.++|||+|||+++++++|+++|++||+|..|.+..+ +.++|||||+|.+.++|++|+..|||..|.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 368899999999999999999999999999999999654 67899999999999999999999999999999998876
Q ss_pred cc
Q 022981 80 AH 81 (289)
Q Consensus 80 ~~ 81 (289)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 126
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=9.4e-19 Score=126.67 Aligned_cols=78 Identities=26% Similarity=0.461 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCC
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (289)
...++|||+|||+++++++|+++|++||.|. +.++. +.++|||||+|.+.++|++|+..|||..|.|+.|.|.++.+.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW-QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc-CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 4588999999999999999999999999996 55543 467899999999999999999999999999999999999865
No 127
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.77 E-value=1.8e-18 Score=128.11 Aligned_cols=74 Identities=30% Similarity=0.625 Sum_probs=70.1
Q ss_pred CCCeEEEcCCCCC-ccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCC
Q 022981 5 FSRTIYVGNLPSD-IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (289)
Q Consensus 5 ~~~~l~V~nLp~~-~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (289)
+.++|||+|||++ +++++|+++|++||+|..|.+ ++|||||+|.+.++|++|+..||+..|.|+.|.|.++...
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 4589999999999 999999999999999999999 3899999999999999999999999999999999999854
No 128
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.77 E-value=3.8e-19 Score=128.17 Aligned_cols=78 Identities=21% Similarity=0.230 Sum_probs=70.4
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.+.++|||+|||+++++++|+++|++||.|..+.++. ++.++|||||+|.++++|++|++.||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 4568999999999999999999999999998776644 4577899999999999999999999999999999999987
Q ss_pred c
Q 022981 81 H 81 (289)
Q Consensus 81 ~ 81 (289)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 6
No 129
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=126.62 Aligned_cols=80 Identities=21% Similarity=0.297 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCC
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (289)
.+.++|||+|||+++++++|+++|+.|+.|.-+....++.++|||||+|.+.++|++||..||+..|.|+.|.|.++++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 92 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCC
Confidence 67899999999999999999999998865544433446778899999999999999999999999999999999999876
No 130
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.2e-19 Score=129.66 Aligned_cols=80 Identities=31% Similarity=0.594 Sum_probs=74.4
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.+.++|||+|||+.+++++|+++|++||.|..|.+.. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 4568999999999999999999999999999999964 4677899999999999999999999999999999999999
Q ss_pred cCC
Q 022981 81 HGG 83 (289)
Q Consensus 81 ~~~ 83 (289)
...
T Consensus 86 ~~~ 88 (104)
T 1p1t_A 86 ASE 88 (104)
T ss_dssp TCT
T ss_pred CCc
Confidence 865
No 131
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=5.6e-19 Score=128.06 Aligned_cols=80 Identities=23% Similarity=0.267 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEc---cCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELK---IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~---~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
...++|||+|||+++++++|+++|++||.|..+.++ .++.++|||||+|.+.++|++|++.|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 456889999999999999999999999999866554 34677999999999999999999999999999999999998
Q ss_pred cCC
Q 022981 81 HGG 83 (289)
Q Consensus 81 ~~~ 83 (289)
...
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 754
No 132
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.6e-18 Score=129.19 Aligned_cols=78 Identities=26% Similarity=0.415 Sum_probs=72.4
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
+.++|||+|||+++++++|+++|++||.|..|.|+.+ +.++|||||+|.+.++|++|| .|||..|.|+.|.|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 4579999999999999999999999999999999754 578999999999999999999 799999999999999987
Q ss_pred CC
Q 022981 82 GG 83 (289)
Q Consensus 82 ~~ 83 (289)
..
T Consensus 103 ~~ 104 (114)
T 2cq4_A 103 AE 104 (114)
T ss_dssp HH
T ss_pred CC
Confidence 54
No 133
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.77 E-value=3.3e-18 Score=135.01 Aligned_cols=80 Identities=34% Similarity=0.508 Sum_probs=75.3
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.+.++|||+|||+++++++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++||..|||..|.|+.|.|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4578999999999999999999999999999999965 4688999999999999999999999999999999999999
Q ss_pred cCC
Q 022981 81 HGG 83 (289)
Q Consensus 81 ~~~ 83 (289)
.+.
T Consensus 148 ~~~ 150 (158)
T 2kn4_A 148 RYG 150 (158)
T ss_dssp CCS
T ss_pred CCC
Confidence 866
No 134
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.77 E-value=7.3e-19 Score=126.94 Aligned_cols=78 Identities=23% Similarity=0.351 Sum_probs=72.8
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCC
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (289)
.+.++|||+|||+++++++|+++|++||.|..+ ..++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++.+.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE--EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe--CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 567899999999999999999999999999877 556778999999999999999999999999999999999999865
No 135
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.76 E-value=7.6e-19 Score=134.37 Aligned_cols=80 Identities=16% Similarity=0.257 Sum_probs=73.9
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHHhhcCCeeE--EEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCc----eeCCc
Q 022981 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILD--IELKI---PPRPPCYCFVEFENARDAEDAIRGRDGY----NFDGC 73 (289)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~--v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~----~~~g~ 73 (289)
+.+.++|||+|||+++|+++|+++|++||.|.. |+|+. ++.++|||||+|.+. +|++|+..|||. .|.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 467899999999999999999999999999966 88865 467899999999999 999999999999 99999
Q ss_pred eEEEEEccCC
Q 022981 74 RLRVELAHGG 83 (289)
Q Consensus 74 ~l~v~~~~~~ 83 (289)
.|.|.++.+.
T Consensus 99 ~l~V~~a~~~ 108 (131)
T 2m2b_A 99 TINVEFAKGS 108 (131)
T ss_dssp CCCCEECCCS
T ss_pred EEEEEECCCC
Confidence 9999999865
No 136
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.76 E-value=2.7e-18 Score=132.67 Aligned_cols=77 Identities=32% Similarity=0.552 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.+.++|||+|||+++++++|+++|++||+|..|.|..+ +.++|||||+|.+.++|++|++.|||..|.|+.|.|.+|
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 57899999999999999999999999999999999654 678999999999999999999999999999999999875
No 137
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.76 E-value=7.8e-19 Score=120.83 Aligned_cols=72 Identities=22% Similarity=0.330 Sum_probs=67.5
Q ss_pred eEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 8 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
+|||+|||+++++++|+++|++||+|..|.+.. ++.++|||||+|.+.++|++|++ ||+..|.|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 599999999999999999999999999999965 46789999999999999999998 9999999999999875
No 138
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.1e-18 Score=122.41 Aligned_cols=78 Identities=18% Similarity=0.304 Sum_probs=72.9
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC--CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
.+.++|||+|||+++++++|+++|+.| .|..|.|+.+ +.++|||||+|.+.++|++|+. ||+..|.|+.|.|.++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 567899999999999999999999999 9999999764 6779999999999999999999 99999999999999998
Q ss_pred CC
Q 022981 82 GG 83 (289)
Q Consensus 82 ~~ 83 (289)
..
T Consensus 86 ~~ 87 (91)
T 2dgw_A 86 SG 87 (91)
T ss_dssp SC
T ss_pred cC
Confidence 65
No 139
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6e-18 Score=123.75 Aligned_cols=78 Identities=18% Similarity=0.315 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.+.++|||+|||+++++++|+++|++||+|..|.|+.+ +.++|||||+|.+.++|++||. ++..|.|+.|.|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEec
Confidence 67899999999999999999999999999999999654 6788999999999999999999 478999999999999
Q ss_pred cCC
Q 022981 81 HGG 83 (289)
Q Consensus 81 ~~~ 83 (289)
.+.
T Consensus 91 ~~~ 93 (103)
T 2cqg_A 91 NSK 93 (103)
T ss_dssp CTT
T ss_pred CCC
Confidence 876
No 140
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.76 E-value=5.7e-19 Score=131.92 Aligned_cols=75 Identities=63% Similarity=1.020 Sum_probs=64.1
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 121 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
....++|||+|||+.+++++|+++|.+||.|..+.|..+ |||||+|.+.++|++|++.
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~----------------------g~afV~f~~~~~a~~Ai~~ 70 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----------------------GTGVVEFVRKEDMTYAVRK 70 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT----------------------SEEEEEESSHHHHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC----------------------CEEEEEECCHHHHHHHHHH
Confidence 456789999999999999999999999999999998763 5999999999999999999
Q ss_pred cCCcccCCccccce-----eeeeccC
Q 022981 201 LDDTEFRNPWARGR-----ITVKRYD 221 (289)
Q Consensus 201 ~~~~~~~~~~~g~~-----i~v~~~~ 221 (289)
|++..+. |+. |+|..+.
T Consensus 71 l~g~~~~----gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 71 LDNTKFR----SHEGETAYIRVKVDG 92 (115)
T ss_dssp HTTCBCC----CTTSCCCBCEEEECC
T ss_pred hCCCEEC----CcEeeeEEEEeccCC
Confidence 9999998 766 5555544
No 141
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.76 E-value=1.2e-18 Score=133.90 Aligned_cols=80 Identities=34% Similarity=0.508 Sum_probs=74.9
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.+.++|||+|||+++|+++|+++|++||+|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4678999999999999999999999999999999965 4678999999999999999999999999999999999999
Q ss_pred cCC
Q 022981 81 HGG 83 (289)
Q Consensus 81 ~~~ 83 (289)
++.
T Consensus 125 ~~~ 127 (135)
T 2lea_A 125 RYG 127 (135)
T ss_dssp CCC
T ss_pred CCC
Confidence 866
No 142
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.76 E-value=8.3e-19 Score=127.71 Aligned_cols=78 Identities=26% Similarity=0.447 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc----CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEE
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI----PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~----~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 79 (289)
...++|||+|||+++++++|+++|++|| |..|.|.. ++.++|||||+|.+.++|++|+ .|||..|.|+.|.|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 5679999999999999999999999999 99999964 4678999999999999999999 7999999999999999
Q ss_pred ccCC
Q 022981 80 AHGG 83 (289)
Q Consensus 80 ~~~~ 83 (289)
+.+.
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 9864
No 143
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.76 E-value=1.2e-18 Score=135.26 Aligned_cols=80 Identities=25% Similarity=0.389 Sum_probs=74.2
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeE--------EEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceE
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILD--------IELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRL 75 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~--------v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 75 (289)
.++++|||+|||+++|+++|+++|++||.|.. +.+..++.++|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 67899999999999999999999999998865 5555678899999999999999999999999999999999
Q ss_pred EEEEccCC
Q 022981 76 RVELAHGG 83 (289)
Q Consensus 76 ~v~~~~~~ 83 (289)
.|.++...
T Consensus 123 ~V~~a~~~ 130 (143)
T 3egn_A 123 VVQFARSA 130 (143)
T ss_dssp EEEECCCS
T ss_pred EEEECCCC
Confidence 99999865
No 144
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.6e-18 Score=127.72 Aligned_cols=78 Identities=18% Similarity=0.344 Sum_probs=72.9
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
+.++|||+|||+++++++|+++|++||.|..|.|+.+ +.++|||||+|.+.++|++||.. ++..|.|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 4589999999999999999999999999999999764 67899999999999999999996 9999999999999998
Q ss_pred CC
Q 022981 82 GG 83 (289)
Q Consensus 82 ~~ 83 (289)
+.
T Consensus 105 ~~ 106 (116)
T 1x4b_A 105 AR 106 (116)
T ss_dssp SC
T ss_pred CC
Confidence 76
No 145
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.76 E-value=2.2e-18 Score=132.36 Aligned_cols=125 Identities=15% Similarity=0.084 Sum_probs=80.3
Q ss_pred ceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 022981 46 CYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEY 125 (289)
Q Consensus 46 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (289)
.++|++|++...+..||+.|+|....|+.- +. .+...+...+.+
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~-----------------------------------~~~~~~~~~~~~ 48 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MS-----------------------------------YGRPPPDVEGMT 48 (135)
T ss_dssp -------------------------------CC-----------------------------------SCCSCSSGGGCC
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC-CC-----------------------------------cCCCCCCCCCCC
Confidence 477888888888888988887655443320 00 112233445567
Q ss_pred eeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcc
Q 022981 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTE 205 (289)
Q Consensus 126 ~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~ 205 (289)
+|||+|||..+++++|.++|.+||.|..+.|..+.. ++.++|||||+|.+.++|.+|++.|++..
T Consensus 49 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~---------------~g~~~G~afV~F~~~~~A~~Ai~~l~g~~ 113 (135)
T 2lea_A 49 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRY---------------TKESRGFAFVRFHDKRDAEDAMDAMDGAV 113 (135)
T ss_dssp CEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSS---------------SSSCCSCCEEECSCHHHHHHHHTTTTTCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC---------------CCccceEEEEEECCHHHHHHHHHHcCCCE
Confidence 999999999999999999999999999999998876 66889999999999999999999999999
Q ss_pred cCCccccceeeeeccCCCCC
Q 022981 206 FRNPWARGRITVKRYDRSPS 225 (289)
Q Consensus 206 ~~~~~~g~~i~v~~~~~~~~ 225 (289)
+. |+.|.|+.+.....
T Consensus 114 i~----g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 114 LD----GRELRVQMARYGRP 129 (135)
T ss_dssp SS----SSCCEEEECCCCCC
T ss_pred EC----CEEEEEEECCCCCC
Confidence 98 89999999975443
No 146
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.75 E-value=4.8e-18 Score=128.56 Aligned_cols=78 Identities=24% Similarity=0.414 Sum_probs=72.8
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
+.++|||+|||+++|+++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|+ .|||..|.|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 468999999999999999999999999999999964 5788999999999999999999 699999999999999998
Q ss_pred CC
Q 022981 82 GG 83 (289)
Q Consensus 82 ~~ 83 (289)
..
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 147
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.75 E-value=2.8e-18 Score=136.50 Aligned_cols=81 Identities=22% Similarity=0.383 Sum_probs=74.3
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.+.++|||+|||+.+++++|.++|++||+|..|.|+. ++.++|||||+|.+.++|++||..|||..|.|+.|.|.++
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4567899999999999999999999999999999965 4677899999999999999999999999999999999999
Q ss_pred cCCC
Q 022981 81 HGGS 84 (289)
Q Consensus 81 ~~~~ 84 (289)
....
T Consensus 150 ~~~~ 153 (165)
T 1rk8_A 150 FVKG 153 (165)
T ss_dssp EECC
T ss_pred cCCC
Confidence 8663
No 148
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.75 E-value=3.8e-18 Score=123.90 Aligned_cols=81 Identities=26% Similarity=0.345 Sum_probs=75.9
Q ss_pred CcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcC
Q 022981 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLD 202 (289)
Q Consensus 123 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~ 202 (289)
.+++|||+|||..+++++|.++|++||.|..+.|..++. ||.++|||||+|.+.++|.+|++.|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~---------------tg~~kG~afV~f~~~~~A~~Ai~~ln 82 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKV---------------AGHSLGYGFVNYVTAKDAERAINTLN 82 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSS---------------SCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCC---------------CCcccccEEEEECCHHHHHHHHHHhC
Confidence 456899999999999999999999999999999999877 67899999999999999999999999
Q ss_pred CcccCCccccceeeeeccCC
Q 022981 203 DTEFRNPWARGRITVKRYDR 222 (289)
Q Consensus 203 ~~~~~~~~~g~~i~v~~~~~ 222 (289)
|..+. |+.|.|+.+++
T Consensus 83 g~~~~----gr~l~V~~AkP 98 (99)
T 4fxv_A 83 GLRLQ----SKTIKVSYARP 98 (99)
T ss_dssp TCEET----TEECEEEECCB
T ss_pred CCEEC----CEEEEEEEeeC
Confidence 99998 99999998853
No 149
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.75 E-value=5.5e-19 Score=126.04 Aligned_cols=76 Identities=32% Similarity=0.573 Sum_probs=69.7
Q ss_pred CeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCC
Q 022981 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (289)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (289)
++|||+|||+++++++|+++|++||+|..|.+..+ +.++|||||+|.+.+ |++|+..|||..|.|+.|.|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999754 678999999999999 99999999999999999999999865
No 150
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-18 Score=120.59 Aligned_cols=73 Identities=14% Similarity=0.312 Sum_probs=68.5
Q ss_pred CeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
++|||+|||+++++++|+++|++||+|..|.+..+ +.++|||||+|.+.++|++|+..++ ..+.|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 58999999999999999999999999999999653 6789999999999999999999888 9999999999986
No 151
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.9e-18 Score=128.93 Aligned_cols=79 Identities=15% Similarity=0.130 Sum_probs=72.8
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCe-eEEEEcc--CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRI-LDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i-~~v~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.+.++|||+|||+++|+++|+++|+.||.| ..|.|+. ++.++|||||+|.+.++|++||.. |+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 578899999999999999999999999999 8888865 467899999999999999999995 999999999999999
Q ss_pred cCC
Q 022981 81 HGG 83 (289)
Q Consensus 81 ~~~ 83 (289)
...
T Consensus 92 ~~~ 94 (114)
T 2cpy_A 92 TLE 94 (114)
T ss_dssp CHH
T ss_pred CHH
Confidence 754
No 152
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.75 E-value=2.3e-18 Score=122.34 Aligned_cols=77 Identities=32% Similarity=0.372 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccC
Q 022981 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (289)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 82 (289)
+...++|||+|||+++++++|+++|++| .|..+.+. .++|||||+|.+.++|++|+..|||..+.|+.|.|.++..
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 2 SSGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD---RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE---GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe---CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 4678999999999999999999999999 99999884 5689999999999999999999999999999999999875
Q ss_pred C
Q 022981 83 G 83 (289)
Q Consensus 83 ~ 83 (289)
.
T Consensus 78 ~ 78 (88)
T 1wg1_A 78 D 78 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 153
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.6e-18 Score=124.67 Aligned_cols=79 Identities=15% Similarity=0.191 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeE-EEEcc--CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILD-IELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~-v~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.+.++|||+|||+++|+++|+++|++||.|.. |.|.. +++++|||||+|.++++|++||.. ++..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 56789999999999999999999999999987 87755 467899999999999999999995 999999999999998
Q ss_pred cCC
Q 022981 81 HGG 83 (289)
Q Consensus 81 ~~~ 83 (289)
...
T Consensus 92 ~~~ 94 (104)
T 1wg5_A 92 SRA 94 (104)
T ss_dssp CTT
T ss_pred CHH
Confidence 755
No 154
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.3e-17 Score=120.71 Aligned_cols=75 Identities=25% Similarity=0.482 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCC
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (289)
.+.++|||+|| ++|+++|+++|++||+|..|.|. .++|||||+|.+.++|++||..|||..|.|+.|.|.++.+.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE---TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec---CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 57789999996 99999999999999999999985 45899999999999999999999999999999999999866
No 155
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.1e-18 Score=126.99 Aligned_cols=80 Identities=18% Similarity=0.303 Sum_probs=73.6
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC--CCCCceEEEEEccHHHHHHHHHHhCCcee--------CCc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNF--------DGC 73 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~--------~g~ 73 (289)
.+.++|||+|||+++++++|+++|++||.|..|.|..+ +.++|||||+|.+.++|++|+..|||..| .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 56789999999999999999999999999999999654 67789999999999999999999999999 578
Q ss_pred eEEEEEccCC
Q 022981 74 RLRVELAHGG 83 (289)
Q Consensus 74 ~l~v~~~~~~ 83 (289)
+|.|.++.+.
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999999854
No 156
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.75 E-value=1.6e-18 Score=130.06 Aligned_cols=79 Identities=16% Similarity=0.201 Sum_probs=72.6
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCC---eeEEEEccC--CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEE
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGR---ILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~---i~~v~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 78 (289)
.+.++|||+|||+++|+++|+++|+.||. |..|.|+.+ ++++|||||+|.+.++|++||+ ||+..|.|+.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 46789999999999999999999999999 889998654 6789999999999999999999 99999999999999
Q ss_pred EccCC
Q 022981 79 LAHGG 83 (289)
Q Consensus 79 ~~~~~ 83 (289)
++...
T Consensus 94 ~a~~~ 98 (118)
T 2db1_A 94 KSHRT 98 (118)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98643
No 157
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.75 E-value=4.4e-18 Score=133.17 Aligned_cols=78 Identities=42% Similarity=0.733 Sum_probs=73.7
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCC
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (289)
.+.++|||+|||+++|+++|+++|++||.|..|.+..+ ++|||||+|.+.++|+.|+..|||..|.|+.|.|.++.+.
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN--PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS--SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC--CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 56789999999999999999999999999999999876 5899999999999999999999999999999999999865
No 158
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.75 E-value=5.1e-18 Score=126.74 Aligned_cols=76 Identities=21% Similarity=0.245 Sum_probs=67.0
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCce-----EEEE
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR-----LRVE 78 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-----l~v~ 78 (289)
...++|||+|||+++++++|+++|++||+|..|.|+.+ |||||+|.+.++|++||+.|||..|.|+. |.|.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 45689999999999999999999999999999999765 99999999999999999999999999998 7777
Q ss_pred EccCC
Q 022981 79 LAHGG 83 (289)
Q Consensus 79 ~~~~~ 83 (289)
.+.+.
T Consensus 90 ~~~~~ 94 (115)
T 3beg_B 90 VDGPR 94 (115)
T ss_dssp ECC--
T ss_pred cCCCC
Confidence 76643
No 159
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.2e-18 Score=124.98 Aligned_cols=78 Identities=19% Similarity=0.253 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc--CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
.+.++|||+|||+++|+++|+++|++||.| .|.|+. +++++|||||+|.++++|++||+ +|+..|.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 577899999999999999999999999955 888865 46789999999999999999996 89999999999999987
Q ss_pred CC
Q 022981 82 GG 83 (289)
Q Consensus 82 ~~ 83 (289)
..
T Consensus 91 ~~ 92 (102)
T 1wez_A 91 TA 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 160
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2.1e-17 Score=122.00 Aligned_cols=82 Identities=59% Similarity=0.912 Sum_probs=72.1
Q ss_pred CCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHH
Q 022981 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAI 198 (289)
Q Consensus 119 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~ 198 (289)
++....++|||+|||+.+++++|+++|.+||.|..+.|..+ |||||+|.+.++|++|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~----------------------g~afV~f~~~~~a~~Ai 67 (108)
T 1x4c_A 10 PSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----------------------GTGVVEFVRKEDMTYAV 67 (108)
T ss_dssp CCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT----------------------TEEEEEESSHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC----------------------CEEEEEECCHHHHHHHH
Confidence 44566789999999999999999999999999999999874 59999999999999999
Q ss_pred HhcCCcccCC-ccccceeeeeccCC
Q 022981 199 RKLDDTEFRN-PWARGRITVKRYDR 222 (289)
Q Consensus 199 ~~~~~~~~~~-~~~g~~i~v~~~~~ 222 (289)
+.|++..+.+ .+.++.|.|+.+..
T Consensus 68 ~~l~g~~~~g~~~~~~~i~V~~a~~ 92 (108)
T 1x4c_A 68 RKLDNTKFRSHEGETAYIRVKVDGP 92 (108)
T ss_dssp HHSSSEEEECTTSCEEEEEEEESSC
T ss_pred HHHCcCCccCCcCcceEEEEEeCCC
Confidence 9999999982 22239999999875
No 161
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.74 E-value=1.7e-18 Score=119.04 Aligned_cols=72 Identities=22% Similarity=0.499 Sum_probs=67.2
Q ss_pred eEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 8 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
+|||+|||+++++++|+++|++||+|..|.+..+ +.++|||||+|.+.++|++|++ +++..|.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 6999999999999999999999999999999654 6789999999999999999999 6999999999999875
No 162
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-18 Score=127.02 Aligned_cols=78 Identities=21% Similarity=0.287 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.+.++|||+|||+++|+++|+++|++||.|.. .++. ++.++|||||+|.+.++|++||+ |||..|.|+.|.|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 46789999999999999999999999998877 3332 46789999999999999999999 9999999999999999
Q ss_pred cCC
Q 022981 81 HGG 83 (289)
Q Consensus 81 ~~~ 83 (289)
.+.
T Consensus 93 ~~~ 95 (101)
T 1fj7_A 93 KGR 95 (101)
T ss_dssp SCC
T ss_pred CCC
Confidence 865
No 163
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=7.3e-18 Score=118.51 Aligned_cols=73 Identities=26% Similarity=0.373 Sum_probs=66.9
Q ss_pred CCCCe-EEEcCCCCCccHHH----HHHHHhhc-CCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEE
Q 022981 4 RFSRT-IYVGNLPSDIREYE----VEDLFYKY-GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (289)
Q Consensus 4 ~~~~~-l~V~nLp~~~t~~~----L~~~F~~~-G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 77 (289)
.|+.| |||+|||..+++++ |.++|++| |+|.+| + .|+|||+|.+.++|++|++.|||..|.|++|+|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----t---gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----T---GCSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----C---TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----e---cCEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 57888 99999999999998 55899999 599998 3 399999999999999999999999999999999
Q ss_pred EEccCC
Q 022981 78 ELAHGG 83 (289)
Q Consensus 78 ~~~~~~ 83 (289)
.+++..
T Consensus 79 ~~A~~~ 84 (96)
T 2diu_A 79 SFTPKN 84 (96)
T ss_dssp ESSCCS
T ss_pred EecCCC
Confidence 999865
No 164
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=9.1e-18 Score=121.15 Aligned_cols=79 Identities=16% Similarity=0.342 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEE-EccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccC
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIE-LKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~-~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 82 (289)
...++|||+|||+++++++|+++|++||+|..|+ ++.+. ..+.|||+|.+.++|++|+..|||..|.|+.|.|.++.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~-~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDS-ETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSS-SSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 4578999999999999999999999999999994 65543 345699999999999999999999999999999999986
Q ss_pred C
Q 022981 83 G 83 (289)
Q Consensus 83 ~ 83 (289)
.
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 5
No 165
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.74 E-value=1.5e-17 Score=130.32 Aligned_cols=77 Identities=23% Similarity=0.334 Sum_probs=69.8
Q ss_pred CeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCC--ceEEEEEccCCC
Q 022981 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVELAHGGS 84 (289)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~~~~~~ 84 (289)
.+|||+||++.+|+++|+++|++||.|++|.|.. +.++|||||+|.+.++|++|++.|||..|.| +.|+|+|++...
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~-k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT-KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEE-SSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEe-CCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 4588999999999999999999999999999853 3357899999999999999999999999965 999999998763
No 166
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.4e-17 Score=119.77 Aligned_cols=77 Identities=17% Similarity=0.387 Sum_probs=67.6
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCC
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (289)
+..++|||+|||+++|+++|+++|++||.|.+|.+.. ...+ ||||+|.+.++|++|+. |||..|.|+.|.|.++...
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~-~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDK-DKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECS-SSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcC-CCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 5678999999999999999999999999999983222 1112 99999999999999999 9999999999999988755
No 167
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.74 E-value=2.5e-18 Score=131.81 Aligned_cols=79 Identities=15% Similarity=0.167 Sum_probs=72.6
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCC---eeEEEEccC--CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEE
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGR---ILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~---i~~v~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 78 (289)
.+.++|||+|||+++|+++|+++|++||. |..|.|+.+ ++++|||||+|.+.++|++||+ ||+..|.|+.|.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 46789999999999999999999999999 889988654 6789999999999999999999 99999999999999
Q ss_pred EccCC
Q 022981 79 LAHGG 83 (289)
Q Consensus 79 ~~~~~ 83 (289)
++...
T Consensus 121 ~a~~~ 125 (136)
T 2hgl_A 121 KSHRT 125 (136)
T ss_dssp ECCHH
T ss_pred ECChH
Confidence 98643
No 168
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=123.31 Aligned_cols=75 Identities=21% Similarity=0.235 Sum_probs=69.3
Q ss_pred CCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC--CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccC
Q 022981 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (289)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 82 (289)
..+|||+|||+++|+++|+++|+.| .|.+|.|+.+ ++++|||||+|.+.++|++||. ||+..|.|+.|.|..+..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALK-RNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHH-TTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECCc
Confidence 4689999999999999999999999 8999999754 6789999999999999999995 999999999999988864
No 169
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.73 E-value=9.2e-18 Score=134.81 Aligned_cols=80 Identities=21% Similarity=0.365 Sum_probs=74.9
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC--CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
.+.++|||+|||+++++++|+++|++||+|..|.|..+ +.++|||||+|.+.++|++|++.|||..|.|+.|.|+++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 46789999999999999999999999999999999664 6789999999999999999999999999999999999998
Q ss_pred CC
Q 022981 82 GG 83 (289)
Q Consensus 82 ~~ 83 (289)
..
T Consensus 166 ~~ 167 (177)
T 2f3j_A 166 SQ 167 (177)
T ss_dssp SG
T ss_pred CC
Confidence 55
No 170
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.73 E-value=2.6e-17 Score=124.29 Aligned_cols=75 Identities=24% Similarity=0.371 Sum_probs=68.5
Q ss_pred eEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCce-EEEEEccHHHHHHHHHHhCCceeCC--ceEEEEEccCCC
Q 022981 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCY-CFVEFENARDAEDAIRGRDGYNFDG--CRLRVELAHGGS 84 (289)
Q Consensus 8 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~~~~~~ 84 (289)
.|||+||++.+|+++|.++|++||.|.+|.+... .+|| |||+|.+.++|++|++.|||..|.| +.|+|++++...
T Consensus 30 ~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~--~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK--NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE--TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred EEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC--CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 4679999999999999999999999999988643 3688 9999999999999999999999988 999999998763
No 171
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.73 E-value=1.4e-17 Score=117.88 Aligned_cols=73 Identities=29% Similarity=0.549 Sum_probs=68.4
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHHhhc----C-------CeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeC
Q 022981 3 GRFSRTIYVGNLPSDIREYEVEDLFYKY----G-------RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (289)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~----G-------~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 71 (289)
+++.++|||+|||+++++++|+++|++| | +|.++.+..+ +|||||+|.+.++|++|+ .|||..|.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~---kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---KNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS---SSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC---CcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 4678999999999999999999999999 8 9999998755 899999999999999999 89999999
Q ss_pred CceEEEEE
Q 022981 72 GCRLRVEL 79 (289)
Q Consensus 72 g~~l~v~~ 79 (289)
|+.|.|+.
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999974
No 172
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.73 E-value=7.6e-17 Score=120.29 Aligned_cols=87 Identities=23% Similarity=0.285 Sum_probs=78.8
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHH
Q 022981 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIR 199 (289)
Q Consensus 120 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 199 (289)
...+.++|||+|||..+++++|+++|.+||.|..+.|..+.. ++.++|||||+|.+.++|.+|++
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---------------~g~~~g~afV~f~~~~~a~~A~~ 85 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQ---------------TNLSKCFGFVSYDNPVSAQAAIQ 85 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSS---------------SCSEEEEEEEECSSHHHHHHHHH
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC---------------CCCcCccEEEEECCHHHHHHHHH
Confidence 344567999999999999999999999999999999999876 56889999999999999999999
Q ss_pred hcCCcccCCccccceeeeeccCCCCC
Q 022981 200 KLDDTEFRNPWARGRITVKRYDRSPS 225 (289)
Q Consensus 200 ~~~~~~~~~~~~g~~i~v~~~~~~~~ 225 (289)
.|++..+. ++.|.|+.+.....
T Consensus 86 ~l~g~~~~----g~~l~V~~a~~~~~ 107 (115)
T 2cpz_A 86 SMNGFQIG----MKRLKVQLKRSKND 107 (115)
T ss_dssp HHTTCEET----TEECEEECCCCSCC
T ss_pred HcCCCEEC----CEEEEEEEcCCCCc
Confidence 99999998 99999999875443
No 173
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.73 E-value=1.1e-17 Score=132.89 Aligned_cols=141 Identities=14% Similarity=0.124 Sum_probs=78.2
Q ss_pred EEEccHHHHHHHHHHhCCceeC--CceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccee
Q 022981 50 VEFENARDAEDAIRGRDGYNFD--GCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRV 127 (289)
Q Consensus 50 V~f~~~~~A~~A~~~l~g~~~~--g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (289)
.+|++.++|+.|+..|++.... |+.+.+.++... . .+.|.... ...............+.++|
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~--~-------~~~~~~~~------~s~~~~~~~~~~~~~~~~~l 75 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTRE--A-------IHSYERVR------NEDDDELEPGPQRSVEGWIL 75 (165)
T ss_dssp ----------------------------------------------------------------------CCCCC-CEEE
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccc--c-------ccCccccc------cCCCCCCCCCCCCCCCCCEE
Confidence 7899999999999999886654 555554443211 0 00000000 00000011112233456799
Q ss_pred eecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccC
Q 022981 128 IVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFR 207 (289)
Q Consensus 128 ~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~ 207 (289)
||+|||..+++++|.++|.+||.|..+.|..+.. ||.++|||||+|.+.++|.+|+..|++..+.
T Consensus 76 ~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~---------------~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 140 (165)
T 1rk8_A 76 FVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRR---------------TGFSKGYALVEYETHKQALAAKEALNGAEIM 140 (165)
T ss_dssp EEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT---------------TSSEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCC---------------CCcEeeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 9999999999999999999999999999999877 6788999999999999999999999999998
Q ss_pred CccccceeeeeccCCCC
Q 022981 208 NPWARGRITVKRYDRSP 224 (289)
Q Consensus 208 ~~~~g~~i~v~~~~~~~ 224 (289)
|..|.|..+...+
T Consensus 141 ----g~~l~V~~a~~~~ 153 (165)
T 1rk8_A 141 ----GQTIQVDWCFVKG 153 (165)
T ss_dssp ----TEECEEEESEECC
T ss_pred ----CEEEEEEEecCCC
Confidence 8999999987543
No 174
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=2.8e-19 Score=133.82 Aligned_cols=80 Identities=28% Similarity=0.338 Sum_probs=74.5
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeE--------EEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCC
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILD--------IELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~--------v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 72 (289)
.+.++|||+|||+++++++|+++|++||.|.. |.|+.+ +.++|||||+|.+.++|++|+..|||..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 67899999999999999999999999999998 777654 6789999999999999999999999999999
Q ss_pred ceEEEEEccCC
Q 022981 73 CRLRVELAHGG 83 (289)
Q Consensus 73 ~~l~v~~~~~~ 83 (289)
+.|.|.++.+.
T Consensus 85 ~~l~V~~a~~~ 95 (116)
T 2lcw_A 85 NPIKVSFATRR 95 (116)
Confidence 99999999865
No 175
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.72 E-value=3.8e-18 Score=125.77 Aligned_cols=79 Identities=14% Similarity=0.108 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCC---eeEEEEccC--CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEE
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGR---ILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~---i~~v~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 78 (289)
.+.++|||+|||+++|+++|+++|+.||. |..|.|..+ ++++|||||+|.+.++|++||. ||+..|.|+.|.|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 57789999999999999999999999998 899999654 6789999999999999999999 99999999999999
Q ss_pred EccCC
Q 022981 79 LAHGG 83 (289)
Q Consensus 79 ~~~~~ 83 (289)
++...
T Consensus 88 ~a~~~ 92 (107)
T 2lmi_A 88 EINNE 92 (107)
T ss_dssp ECCHH
T ss_pred ECCHH
Confidence 98743
No 176
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7.1e-18 Score=127.69 Aligned_cols=79 Identities=22% Similarity=0.222 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEE---ccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.+.++|||+|||+++|+++|+++|+.||.|..+.+ ..++.++|||||+|.+.++|++||. ||+..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 45689999999999999999999999999976333 2457889999999999999999999 9999999999999998
Q ss_pred cCC
Q 022981 81 HGG 83 (289)
Q Consensus 81 ~~~ 83 (289)
...
T Consensus 102 ~~~ 104 (124)
T 1wel_A 102 TKK 104 (124)
T ss_dssp CHH
T ss_pred CHH
Confidence 754
No 177
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.72 E-value=9.6e-18 Score=140.23 Aligned_cols=78 Identities=14% Similarity=0.178 Sum_probs=71.7
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcC--CeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEE
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYG--RILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G--~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 79 (289)
..++|||+|||+++|+++|+++|++|| .|+.|+|+. +++++|||||+|.+.++|++||+.||+..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999965 467899999999999999999999999999999999999
Q ss_pred ccC
Q 022981 80 AHG 82 (289)
Q Consensus 80 ~~~ 82 (289)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 863
No 178
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=5.9e-17 Score=121.78 Aligned_cols=77 Identities=19% Similarity=0.209 Sum_probs=68.8
Q ss_pred CCCe--EEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCce-EEEEEccHHHHHHHHHHhCCceeCC--ceEEEEE
Q 022981 5 FSRT--IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCY-CFVEFENARDAEDAIRGRDGYNFDG--CRLRVEL 79 (289)
Q Consensus 5 ~~~~--l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~ 79 (289)
++++ |||+||++.+|+++|.++|++||.|.+|.|... .|| |||+|.+.++|+.|++.|||..|.| +.|.|.+
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~---~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR---NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES---SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 4555 579999999999999999999999999998542 486 9999999999999999999999987 6999999
Q ss_pred ccCCC
Q 022981 80 AHGGS 84 (289)
Q Consensus 80 ~~~~~ 84 (289)
+++..
T Consensus 99 Ak~~~ 103 (124)
T 2e5i_A 99 ARPTR 103 (124)
T ss_dssp CSCSC
T ss_pred ecCCc
Confidence 98763
No 179
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.72 E-value=2.4e-17 Score=125.05 Aligned_cols=85 Identities=18% Similarity=0.277 Sum_probs=77.6
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 121 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
..+.++|||+|||..+++++|.++|.+||.|..+.|+.+.. ++.++|||||+|.+.++|.+|++.
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---------------~~~~~g~afV~f~~~~~a~~A~~~ 83 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRR---------------TGYLKGYTLVEYETYKEAQAAMEG 83 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTT---------------TSSBCSCEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC---------------CCccceEEEEEECCHHHHHHHHHH
Confidence 34567999999999999999999999999999999998876 668899999999999999999999
Q ss_pred cCCcccCCccccceeeeeccCCCC
Q 022981 201 LDDTEFRNPWARGRITVKRYDRSP 224 (289)
Q Consensus 201 ~~~~~~~~~~~g~~i~v~~~~~~~ 224 (289)
|++..+. |..|.|+.+....
T Consensus 84 l~g~~~~----g~~l~v~~a~~~~ 103 (126)
T 3ex7_B 84 LNGQDLM----GQPISVDWCFVRG 103 (126)
T ss_dssp HTTCBSS----SSBCEEEESEESS
T ss_pred hCCCeeC----CeEEEEEEecCCC
Confidence 9999998 9999999987443
No 180
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.71 E-value=3.8e-17 Score=116.22 Aligned_cols=74 Identities=22% Similarity=0.483 Sum_probs=63.0
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCce--eCCceEEEEEcc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYN--FDGCRLRVELAH 81 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~--~~g~~l~v~~~~ 81 (289)
.+..+|||+|||+++|+++|+++|++||+|.+|.|+.+ ++|||||+|.+.++|++ |++.. +.|+.|.|.++.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~--srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP--FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS--CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC--CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 57899999999999999999999999999999999764 78999999999999983 45555 469999999988
Q ss_pred CC
Q 022981 82 GG 83 (289)
Q Consensus 82 ~~ 83 (289)
+.
T Consensus 83 ~k 84 (89)
T 3d2w_A 83 PK 84 (89)
T ss_dssp --
T ss_pred CC
Confidence 65
No 181
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.71 E-value=4.1e-18 Score=131.01 Aligned_cols=78 Identities=18% Similarity=0.236 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC--CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
.+.++|||+|||+++|+++|+++|++|| |.+|.|+.+ ++++|||||+|.+.++|++|| .||+..|.|+.|.|..+.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 4668999999999999999999999999 669998654 678999999999999999999 599999999999999988
Q ss_pred CC
Q 022981 82 GG 83 (289)
Q Consensus 82 ~~ 83 (289)
..
T Consensus 122 ~~ 123 (139)
T 2hgn_A 122 TT 123 (139)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 182
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.71 E-value=2.2e-16 Score=117.74 Aligned_cols=90 Identities=22% Similarity=0.292 Sum_probs=80.7
Q ss_pred CCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHH
Q 022981 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYA 197 (289)
Q Consensus 118 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 197 (289)
.....+.++|||+|||..+++++|.++|.+||.|..+.|..+.. ++.++|||||+|.+.++|.+|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---------------~~~~~g~afV~f~~~~~a~~A 73 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMA---------------TGKSKGYGFVSFFNKWDAENA 73 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT---------------TCCEEEEEEEEESSHHHHHHH
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC---------------CCCcceEEEEEECCHHHHHHH
Confidence 33445678999999999999999999999999999999999876 568899999999999999999
Q ss_pred HHhcCCcccCCccccceeeeeccCCCCCC
Q 022981 198 IRKLDDTEFRNPWARGRITVKRYDRSPSR 226 (289)
Q Consensus 198 ~~~~~~~~~~~~~~g~~i~v~~~~~~~~r 226 (289)
++.|++..+. |+.|.|..+...+..
T Consensus 74 ~~~l~g~~~~----g~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 74 IQQMGGQWLG----GRQIRTNWATRKPPA 98 (115)
T ss_dssp HHHTTTCEET----TEECEEEESSCCCCC
T ss_pred HHHhCCCEEC----CEEEEEEEccCCCCC
Confidence 9999999998 899999999865443
No 183
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.7e-17 Score=117.80 Aligned_cols=77 Identities=22% Similarity=0.430 Sum_probs=67.0
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccC
Q 022981 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (289)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 82 (289)
..++++|||+|||+++++++|+++|++||+|.+|.|..+ ++|||||+|.+.++|++|+. ....+.|+.|.|.++.+
T Consensus 2 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP--FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEP 77 (88)
T ss_dssp CSCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS--CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC--CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCC
Confidence 467899999999999999999999999999999999764 68999999999999986533 13455899999999886
Q ss_pred C
Q 022981 83 G 83 (289)
Q Consensus 83 ~ 83 (289)
.
T Consensus 78 ~ 78 (88)
T 1wf0_A 78 K 78 (88)
T ss_dssp C
T ss_pred C
Confidence 5
No 184
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.71 E-value=1.7e-17 Score=125.22 Aligned_cols=77 Identities=18% Similarity=0.205 Sum_probs=69.4
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCee--EEEEccC--CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEE
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRIL--DIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~--~v~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 79 (289)
.+.++|||+|||+++|+++|+++|++| .|. +|.|+.+ ++++|||||+|.++++|++||+ +++..|.|+.|.|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 457899999999999999999999999 576 8888654 6889999999999999999999 688999999999998
Q ss_pred ccC
Q 022981 80 AHG 82 (289)
Q Consensus 80 ~~~ 82 (289)
+..
T Consensus 118 a~~ 120 (126)
T 2hgm_A 118 SSQ 120 (126)
T ss_dssp ECH
T ss_pred CCH
Confidence 764
No 185
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=5.1e-18 Score=127.79 Aligned_cols=78 Identities=19% Similarity=0.158 Sum_probs=70.4
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCe----eEEEEcc--CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEE
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRI----LDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i----~~v~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 77 (289)
.+..+|||+|||+++|+++|+++|++||+| ..|.|+. +++++|||||+|.+.++|++||+ +|+..|.|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~-~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALR-KHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHT-TTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeeCCeEEEE
Confidence 567899999999999999999999999976 5788854 57889999999999999999999 5999999999999
Q ss_pred EEccC
Q 022981 78 ELAHG 82 (289)
Q Consensus 78 ~~~~~ 82 (289)
..+..
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98764
No 186
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.71 E-value=1.8e-16 Score=118.45 Aligned_cols=84 Identities=18% Similarity=0.299 Sum_probs=76.2
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhc
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKL 201 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 201 (289)
....+|||+|||..+++++|.++|++||.|..+.|..+..| .++|||||+|.+.++|.+|++.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g----------------~~~g~afV~F~~~~~A~~Ai~~l 68 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS----------------KSRGFAFITFENPADAKNAAKDM 68 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTT----------------TCCCEEEEECSSHHHHHHHHHHC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCC----------------CcccEEEEEECCHHHHHHHHHHh
Confidence 34569999999999999999999999999999999987643 77899999999999999999999
Q ss_pred CCcccCCccccceeeeeccCCCCC
Q 022981 202 DDTEFRNPWARGRITVKRYDRSPS 225 (289)
Q Consensus 202 ~~~~~~~~~~g~~i~v~~~~~~~~ 225 (289)
++..+. |+.|.|+.+.....
T Consensus 69 ~g~~~~----g~~l~V~~a~~~~~ 88 (116)
T 2fy1_A 69 NGKSLH----GKAIKVEQAKKPSF 88 (116)
T ss_dssp SSCBCS----SSBCEEEECCCSSC
T ss_pred CCCEEC----CEEEEEEECCCCCC
Confidence 999998 89999999975443
No 187
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.70 E-value=6.1e-17 Score=119.78 Aligned_cols=81 Identities=20% Similarity=0.081 Sum_probs=76.4
Q ss_pred CcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcC
Q 022981 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLD 202 (289)
Q Consensus 123 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~ 202 (289)
+..+|||+|||+.+++++|.++|++||.|..+.|+.++. |+.++|||||+|++.++|.+|++.||
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~---------------tg~~rG~aFV~f~~~~~A~~Ai~~ln 69 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPR---------------TRKHLGLARVLFTSTRGAKETVKNLH 69 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT---------------TCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCC---------------CCceeeEEEEEECCHHHHHHHHHHhC
Confidence 456999999999999999999999999999999999888 77999999999999999999999999
Q ss_pred CcccCCccccceeeeeccCC
Q 022981 203 DTEFRNPWARGRITVKRYDR 222 (289)
Q Consensus 203 ~~~~~~~~~g~~i~v~~~~~ 222 (289)
+..+. |+.|.|+.+..
T Consensus 70 g~~~~----gr~i~V~~a~~ 85 (110)
T 3s8s_A 70 LTSVM----GNIIHAQLDIK 85 (110)
T ss_dssp TCEET----TEECEEEECST
T ss_pred CCEEC----CeEEEEEECCC
Confidence 99999 99999999864
No 188
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1e-16 Score=117.08 Aligned_cols=88 Identities=16% Similarity=0.211 Sum_probs=79.7
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHH
Q 022981 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIR 199 (289)
Q Consensus 120 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 199 (289)
...+.++|||+|||..+++++|.++|.+||.|..+.|..+.. ++.++|||||+|.+.++|.+|++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~---------------~~~~~g~afV~f~~~~~A~~A~~ 75 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKT---------------TGQSKGFAFISFHRREDAARAIA 75 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSS---------------SCSEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCC---------------CCceeeEEEEEECCHHHHHHHHH
Confidence 345678999999999999999999999999999999999876 66889999999999999999999
Q ss_pred hcCCcccCCccccceeeeeccCCCCCC
Q 022981 200 KLDDTEFRNPWARGRITVKRYDRSPSR 226 (289)
Q Consensus 200 ~~~~~~~~~~~~g~~i~v~~~~~~~~r 226 (289)
.|++..+. |+.|.|+.+.....+
T Consensus 76 ~l~g~~~~----g~~l~v~~a~~~~~~ 98 (103)
T 2cq0_A 76 GVSGFGYD----HLILNVEWAKPSTNS 98 (103)
T ss_dssp HTTTCEET----TEECEEEESSCCCCS
T ss_pred HcCCCeeC----CcEEEEEECCCCCCC
Confidence 99999998 999999999765443
No 189
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=8.5e-17 Score=115.50 Aligned_cols=83 Identities=18% Similarity=0.177 Sum_probs=76.0
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHH
Q 022981 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIR 199 (289)
Q Consensus 120 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 199 (289)
...+.++|||+|||..+++++|.++|.+||.|..+.+..++. ++.++|||||+|.+.++|.+|++
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~---------------~~~~~g~afV~f~~~~~A~~A~~ 76 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKD---------------TRKSKGVAFILFLDKDSAQNCTR 76 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSS---------------SCCCTTCEEEEESCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC---------------CCCcccEEEEEECCHHHHHHHHH
Confidence 345667999999999999999999999999999999998877 56889999999999999999999
Q ss_pred hcCCcccCCccccceeeeeccC
Q 022981 200 KLDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 200 ~~~~~~~~~~~~g~~i~v~~~~ 221 (289)
.|++..+. |+.|.|+.++
T Consensus 77 ~l~g~~~~----g~~l~v~~ak 94 (94)
T 2e5h_A 77 AINNKQLF----GRVIKASIAI 94 (94)
T ss_dssp HTTTEEET----TEEEEEEECC
T ss_pred HcCCCeeC----CcEEEEEecC
Confidence 99999998 9999998763
No 190
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.2e-16 Score=116.78 Aligned_cols=88 Identities=17% Similarity=0.183 Sum_probs=79.5
Q ss_pred CCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHH
Q 022981 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYA 197 (289)
Q Consensus 118 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 197 (289)
.+...+..+|||+|||..+++++|.++|.+||.|..+.|..+.. |+.++|||||+|.+.++|.+|
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~---------------~~~~~g~afV~f~~~~~A~~A 71 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPH---------------TKAPRGFAFVRFHDRRDAQDA 71 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSS---------------SCSBCSCEEEEESSSSHHHHH
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCC---------------CCCCCeEEEEEECCHHHHHHH
Confidence 34445678999999999999999999999999999999998877 668899999999999999999
Q ss_pred HHhcCCcccCCccccceeeeeccCCCC
Q 022981 198 IRKLDDTEFRNPWARGRITVKRYDRSP 224 (289)
Q Consensus 198 ~~~~~~~~~~~~~~g~~i~v~~~~~~~ 224 (289)
++.|++..+. |+.|.|+.+....
T Consensus 72 ~~~l~g~~~~----g~~l~V~~a~~~~ 94 (103)
T 2dnm_A 72 EAAMDGAELD----GRELRVQVARYGR 94 (103)
T ss_dssp HHHHSSCCBT----TBCCEEEECSSCC
T ss_pred HHHcCCCEEC----CcEEEEEECCcCC
Confidence 9999999998 9999999997543
No 191
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.69 E-value=2.4e-17 Score=120.32 Aligned_cols=78 Identities=24% Similarity=0.477 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc--CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
.+.++|||+|||+++++++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|+. ++..|.|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 4568999999999999999999999999999999966 46678999999999999999999 9999999999999988
Q ss_pred CC
Q 022981 82 GG 83 (289)
Q Consensus 82 ~~ 83 (289)
..
T Consensus 85 ~~ 86 (102)
T 2xs2_A 85 RK 86 (102)
T ss_dssp EC
T ss_pred cC
Confidence 55
No 192
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.3e-16 Score=115.04 Aligned_cols=85 Identities=25% Similarity=0.342 Sum_probs=77.6
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhc
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKL 201 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 201 (289)
.+..+|||+|||..+++++|.++|.+||.|..+.|..++. ++.++|||||+|.+.++|.+|++.|
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~---------------~~~~~g~afV~f~~~~~A~~A~~~l 74 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRE---------------TQRSRGFGFVTFENIDDAKDAMMAM 74 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSS---------------SCSCCSEEEEECSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC---------------CCCcccEEEEEECCHHHHHHHHHHh
Confidence 4567999999999999999999999999999999998876 6688999999999999999999999
Q ss_pred CCcccCCccccceeeeeccCCCCC
Q 022981 202 DDTEFRNPWARGRITVKRYDRSPS 225 (289)
Q Consensus 202 ~~~~~~~~~~g~~i~v~~~~~~~~ 225 (289)
++..+. ++.|.|+.+.....
T Consensus 75 ~g~~~~----g~~l~v~~a~~~~~ 94 (102)
T 1x5s_A 75 NGKSVD----GRQIRVDQAGKSSD 94 (102)
T ss_dssp TTCCTT----SCCCEEEEEECCCC
T ss_pred CCCEEC----CeEEEEEECCCCCC
Confidence 999998 89999999875443
No 193
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.69 E-value=7.8e-17 Score=121.27 Aligned_cols=75 Identities=25% Similarity=0.482 Sum_probs=70.1
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCC
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (289)
.+.++|||+|| ++|+++|+++|++||.|..|.+. .++|||||+|.+.++|++|+..|||..|.|+.|.|.++...
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe---CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 57899999996 79999999999999999999986 45899999999999999999999999999999999999865
No 194
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.3e-16 Score=115.00 Aligned_cols=87 Identities=18% Similarity=0.301 Sum_probs=75.8
Q ss_pred CCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHH
Q 022981 117 FGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKY 196 (289)
Q Consensus 117 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~ 196 (289)
..+...+.++|||+|||..+++++|.++|.+||.|..+.|..+. .+++||||+|.+.++|.+
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~------------------~~~g~afV~f~~~~~A~~ 76 (109)
T 1x4a_A 15 RGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR------------------GGPPFAFVEFEDPRDAED 76 (109)
T ss_dssp SCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSS------------------SSSCCEEEEESCHHHHHH
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC------------------CCCcEEEEEECCHHHHHH
Confidence 33445567899999999999999999999999999999986532 468999999999999999
Q ss_pred HHHhcCCcccCCccccceeeeeccCCCCC
Q 022981 197 AIRKLDDTEFRNPWARGRITVKRYDRSPS 225 (289)
Q Consensus 197 a~~~~~~~~~~~~~~g~~i~v~~~~~~~~ 225 (289)
|++.|++..+. ++.|.|+.+.....
T Consensus 77 A~~~l~g~~~~----g~~l~V~~a~~~~~ 101 (109)
T 1x4a_A 77 AVYGRDGYDYD----GYRLRVEFPRSGRG 101 (109)
T ss_dssp HHHHHTTCEET----TEECEEECCCCCCC
T ss_pred HHHHcCCCEEC----CeEEEEEEcccCCC
Confidence 99999999998 89999999875443
No 195
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.69 E-value=4.7e-17 Score=116.24 Aligned_cols=82 Identities=16% Similarity=0.289 Sum_probs=73.4
Q ss_pred ceeeecCCCCCCCHHHHHHHHHhcC-CeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcC-
Q 022981 125 YRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLD- 202 (289)
Q Consensus 125 ~~l~v~nlp~~~~~~~l~~~f~~~g-~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~- 202 (289)
.+|||+|||..+++++|.++|++|| .|..+.|+.++. ||.++|||||+|.+.++|.+|++.++
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~---------------t~~~rg~aFV~F~~~~~A~~Ai~~~~~ 66 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKS---------------SGQSRGFAFVEFSHLQDATRWMEANQH 66 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSS---------------SCCCSSEEEEECSSHHHHHHHHHTTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCC---------------CCCcCceEEEEecCHHHHHHHHHhcCC
Confidence 4899999999999999999999999 899999998877 77899999999999999999999874
Q ss_pred CcccCCccccceeeeeccCCCCC
Q 022981 203 DTEFRNPWARGRITVKRYDRSPS 225 (289)
Q Consensus 203 ~~~~~~~~~g~~i~v~~~~~~~~ 225 (289)
+..+. |+.|.|+.+...+.
T Consensus 67 ~~~~~----gr~i~V~~a~~~~~ 85 (91)
T 2lxi_A 67 SLNIL----GQKVSMHYSDPKPK 85 (91)
T ss_dssp EEEET----TEEEEEECCCSCCC
T ss_pred CeEEC----CEEEEEEEcCCCCC
Confidence 55677 89999999875443
No 196
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.69 E-value=1.9e-16 Score=115.89 Aligned_cols=80 Identities=19% Similarity=0.220 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCC-----CccHHHHHHHHhhcCCeeEEEEccC----CCCCceEEEEEccHHHHHHHHHHhCCceeCCc
Q 022981 3 GRFSRTIYVGNLPS-----DIREYEVEDLFYKYGRILDIELKIP----PRPPCYCFVEFENARDAEDAIRGRDGYNFDGC 73 (289)
Q Consensus 3 ~~~~~~l~V~nLp~-----~~t~~~L~~~F~~~G~i~~v~~~~~----~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 73 (289)
..++++|+|.||.. +.++++|+++|++||.|.+|.|..+ ++++|||||+|.++++|++|+..|||..|.|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 47899999999963 3478999999999999999999754 46799999999999999999999999999999
Q ss_pred eEEEEEccC
Q 022981 74 RLRVELAHG 82 (289)
Q Consensus 74 ~l~v~~~~~ 82 (289)
.|.|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999864
No 197
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.4e-16 Score=113.34 Aligned_cols=84 Identities=21% Similarity=0.247 Sum_probs=77.1
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHH
Q 022981 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIR 199 (289)
Q Consensus 120 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 199 (289)
...+.++|||+|||..+++++|.++|.+||.|..+.+..++. ++.++|||||+|.+.++|.+|++
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~---------------~~~~~g~afV~f~~~~~A~~A~~ 75 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQ---------------SRRSRGFAFVYFENVDDAKEAKE 75 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSS---------------SSSEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCC---------------CCCcccEEEEEECCHHHHHHHHH
Confidence 345678999999999999999999999999999999999877 66889999999999999999999
Q ss_pred hcCCcccCCccccceeeeeccCC
Q 022981 200 KLDDTEFRNPWARGRITVKRYDR 222 (289)
Q Consensus 200 ~~~~~~~~~~~~g~~i~v~~~~~ 222 (289)
.|++..+. |+.|.|+.++.
T Consensus 76 ~l~g~~~~----g~~l~v~~a~~ 94 (95)
T 2cqc_A 76 RANGMELD----GRRIRVSGPSS 94 (95)
T ss_dssp HHTTEEET----TEEEEEECCSC
T ss_pred HhCCCEEC----CEEEEEEecCC
Confidence 99999998 99999998753
No 198
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.7e-16 Score=114.56 Aligned_cols=86 Identities=26% Similarity=0.328 Sum_probs=78.4
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHH
Q 022981 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIR 199 (289)
Q Consensus 120 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 199 (289)
.....++|||+|||..+++++|.++|.+||.|..+.|..+.. ++.++|||||+|.+.++|.+|++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---------------~~~~~g~afV~f~~~~~a~~A~~ 75 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRV---------------TGQHQGYGFVEFLSEEDADYAIK 75 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSS---------------SCSBCSCEEEEESSHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC---------------CCcCCcEEEEEECCHHHHHHHHH
Confidence 345667999999999999999999999999999999999876 66889999999999999999999
Q ss_pred hcCCcccCCccccceeeeeccCCCC
Q 022981 200 KLDDTEFRNPWARGRITVKRYDRSP 224 (289)
Q Consensus 200 ~~~~~~~~~~~~g~~i~v~~~~~~~ 224 (289)
.|++..+. |+.|.|+.+....
T Consensus 76 ~l~g~~~~----g~~l~v~~a~~~~ 96 (105)
T 1x5u_A 76 IMDMIKLY----GKPIRVNKASAHN 96 (105)
T ss_dssp HSSSCBCS----SCBCEEEETTTTS
T ss_pred HhCCCeEC----CeEEEEEECCCCC
Confidence 99999998 9999999987543
No 199
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=4.1e-16 Score=114.66 Aligned_cols=89 Identities=17% Similarity=0.334 Sum_probs=79.5
Q ss_pred CCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeC-CCCCCchhHHHhhhhhcccccceEEEEecCChHHHHH
Q 022981 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD-SEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKY 196 (289)
Q Consensus 118 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~ 196 (289)
.+.....++|||+|||..+++++|.++|.+||.|..+.|..+ .. ++.++|||||+|.+.++|.+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---------------~~~~~g~afV~f~~~~~a~~ 73 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTG---------------TGAHRGFGFVDFITKQDAKK 73 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSS---------------SCSSCSEEEEEESSHHHHHH
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCC---------------CCCcCceEEEEECCHHHHHH
Confidence 344556789999999999999999999999999999999987 44 56889999999999999999
Q ss_pred HHHhc-CCcccCCccccceeeeeccCCCCC
Q 022981 197 AIRKL-DDTEFRNPWARGRITVKRYDRSPS 225 (289)
Q Consensus 197 a~~~~-~~~~~~~~~~g~~i~v~~~~~~~~ 225 (289)
|++.| ++..+. |+.|.|+.+.....
T Consensus 74 A~~~l~~~~~~~----g~~l~v~~a~~~~~ 99 (107)
T 2cph_A 74 AFNALCHSTHLY----GRRLVLEWADSEVT 99 (107)
T ss_dssp HHHHHHTCCBSS----SCBCEEEECCCCCC
T ss_pred HHHHhccCCeEC----CCEEEEEeCCCCCC
Confidence 99999 999998 89999999976544
No 200
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=3.9e-16 Score=115.57 Aligned_cols=88 Identities=11% Similarity=0.146 Sum_probs=79.1
Q ss_pred CCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHH
Q 022981 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAI 198 (289)
Q Consensus 119 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~ 198 (289)
....+.++|||+|||..+++++|.++|.+||.|..+.|..+.. ++.++|||||+|.+.++|.+|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---------------~g~~~g~afV~f~~~~~A~~A~ 74 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPD---------------TEHSKGCAFAQFMTQEAAQKCL 74 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSS---------------SCCBCSEEEEEESSHHHHHHHH
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCC---------------CCCCccEEEEEECCHHHHHHHH
Confidence 3345677999999999999999999999999999999999877 6788999999999999999999
Q ss_pred HhcC------CcccCCccccceeeeeccCCCCC
Q 022981 199 RKLD------DTEFRNPWARGRITVKRYDRSPS 225 (289)
Q Consensus 199 ~~~~------~~~~~~~~~g~~i~v~~~~~~~~ 225 (289)
+.|+ +..+. |+.|.|+.+.....
T Consensus 75 ~~~~~~~~~~~~~~~----g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 75 AAASLEAEGGGLKLD----GRQLKVDLAVTRDE 103 (111)
T ss_dssp HHHCTTTTTCCEESS----SCEEEEECCCCCCC
T ss_pred HHhccccccCCcEEc----CEEEEEEECCCCcc
Confidence 9999 99988 99999999875443
No 201
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.68 E-value=9.1e-17 Score=132.97 Aligned_cols=79 Identities=25% Similarity=0.343 Sum_probs=73.2
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC-CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCC
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (289)
...+|||+|||+.+|+++|+++|++||.|..|.|+.+ +.++|||||+|.+.++|++||+.|||..|.|+.|.|.++.+.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 4578999999999999999999999999999999664 456899999999999999999999999999999999999754
No 202
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=7.5e-16 Score=114.60 Aligned_cols=85 Identities=24% Similarity=0.309 Sum_probs=76.7
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 121 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
..+.++|||+|||..+++++|.++|.+||.|..+.|..+..+ .++|||||+|.+.++|.+|++.
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g----------------~~~g~afV~f~~~~~a~~A~~~ 75 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDG----------------KSRGIGTVTFEQSIEAVQAISM 75 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTC----------------SEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC----------------CeeeEEEEEECCHHHHHHHHHH
Confidence 345679999999999999999999999999999999987654 6789999999999999999999
Q ss_pred cCCcccCCccccceeeeeccCCCCC
Q 022981 201 LDDTEFRNPWARGRITVKRYDRSPS 225 (289)
Q Consensus 201 ~~~~~~~~~~~g~~i~v~~~~~~~~ 225 (289)
|++..+. ++.|.|+.+.....
T Consensus 76 l~g~~~~----g~~l~v~~a~~~~~ 96 (114)
T 2do0_A 76 FNGQLLF----DRPMHVKMDERALP 96 (114)
T ss_dssp HTTCEET----TEECEEEECSCCCC
T ss_pred hCCCEeC----CCEEEEEEcccCCC
Confidence 9999998 99999999875433
No 203
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.4e-16 Score=114.93 Aligned_cols=85 Identities=19% Similarity=0.209 Sum_probs=77.8
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhc
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKL 201 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 201 (289)
.+.++|||+|||..+++++|.++|.+||.|..+.|+.+.. ++.++|||||+|.+.++|.+|++.|
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~---------------~~~~~g~afV~f~~~~~A~~A~~~l 74 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYE---------------TEKHRGFAFVEFELAEDAAAAIDNM 74 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSS---------------SCCCSSEEEECCSSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCC---------------CCCcceEEEEEECCHHHHHHHHHHh
Confidence 4567999999999999999999999999999999998876 6688999999999999999999999
Q ss_pred CCcccCCccccceeeeeccCCCCC
Q 022981 202 DDTEFRNPWARGRITVKRYDRSPS 225 (289)
Q Consensus 202 ~~~~~~~~~~g~~i~v~~~~~~~~ 225 (289)
++..+. ++.|.|+.+.....
T Consensus 75 ~g~~~~----g~~l~V~~a~~~~~ 94 (102)
T 2cqb_A 75 NESELF----GRTIRVNLAKPMRI 94 (102)
T ss_dssp TTEEET----TEEEEEEECCCCCC
T ss_pred CCCEEC----CcEEEEEeCCCCCC
Confidence 999998 99999999875443
No 204
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=4e-16 Score=113.11 Aligned_cols=85 Identities=18% Similarity=0.327 Sum_probs=77.1
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 121 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
..+.++|||+|||..+++++|+++|.+||.|..+.|..++. ++.++|||||+|.+.++|.+|++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---------------~~~~~g~afV~f~~~~~a~~A~~- 70 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAE---------------KQRPRGFGFITFEDEQSVDQAVN- 70 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTT---------------TCSCCSEEEEEESSHHHHHHHHH-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC---------------CCCCCceEEEEECCHHHHHHHHH-
Confidence 34567999999999999999999999999999999998876 66889999999999999999998
Q ss_pred cCCcccCCccccceeeeeccCCCCC
Q 022981 201 LDDTEFRNPWARGRITVKRYDRSPS 225 (289)
Q Consensus 201 ~~~~~~~~~~~g~~i~v~~~~~~~~ 225 (289)
|++..+. |+.|.|+.+.....
T Consensus 71 ~~~~~~~----g~~l~V~~a~~~~~ 91 (99)
T 2dgs_A 71 MHFHDIM----GKKVEVKRAEPRDS 91 (99)
T ss_dssp HCCCBSS----SCBCEEEECCCCCC
T ss_pred hCCCEEC----CeEEEEEECCCCcc
Confidence 9999988 99999999875443
No 205
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.9e-16 Score=125.21 Aligned_cols=78 Identities=22% Similarity=0.405 Sum_probs=73.3
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.+.++|||+|||+++++++|.++|++||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 5678999999999999999999999999999999964 4678999999999999999999999999999999999998
Q ss_pred c
Q 022981 81 H 81 (289)
Q Consensus 81 ~ 81 (289)
+
T Consensus 165 ~ 165 (166)
T 3md3_A 165 A 165 (166)
T ss_dssp C
T ss_pred C
Confidence 6
No 206
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.68 E-value=1.7e-16 Score=112.12 Aligned_cols=83 Identities=22% Similarity=0.256 Sum_probs=74.6
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhc
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKL 201 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 201 (289)
.+..+|||+|||..+++++|.++|++||.|..+.+..+.. ++.++|||||+|.+.++|.+|++.|
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---------------~~~~~g~afV~f~~~~~A~~A~~~l 68 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMA---------------TGKSKGYGFVSFFNKWDAENAIQQM 68 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT---------------TCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCC---------------CCccceEEEEEECCHHHHHHHHHHc
Confidence 3567999999999999999999999999999999999876 5688999999999999999999999
Q ss_pred CCcccCCccccceeeeeccCCC
Q 022981 202 DDTEFRNPWARGRITVKRYDRS 223 (289)
Q Consensus 202 ~~~~~~~~~~g~~i~v~~~~~~ 223 (289)
++..+. |+.|.|+.+...
T Consensus 69 ~g~~~~----g~~l~v~~a~~k 86 (87)
T 3bs9_A 69 GGQWLG----GRQIRTNWATRK 86 (87)
T ss_dssp TTCEET----TEECEEEEEC--
T ss_pred CCCEEC----CeEEEEEecCCC
Confidence 999988 999999988653
No 207
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=5.9e-16 Score=112.43 Aligned_cols=85 Identities=21% Similarity=0.338 Sum_probs=76.7
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 121 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
..+..+|||+|||..+++++|.++|.+||.|..+.|..+..+ .++|||||+|.+.++|.+|++.
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g----------------~~~g~afV~f~~~~~a~~A~~~ 77 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAG----------------KPKGLAYVEYENESQASQAVMK 77 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTS----------------CEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCC----------------CEEeEEEEEECCHHHHHHHHHH
Confidence 355679999999999999999999999999999999987653 7789999999999999999999
Q ss_pred cCCcccCCccccceeeeeccCCCCC
Q 022981 201 LDDTEFRNPWARGRITVKRYDRSPS 225 (289)
Q Consensus 201 ~~~~~~~~~~~g~~i~v~~~~~~~~ 225 (289)
|++..+. |+.|.|..+...+.
T Consensus 78 l~g~~~~----g~~l~v~~a~~~~~ 98 (100)
T 2do4_A 78 MDGMTIK----ENIIKVAISNSGPS 98 (100)
T ss_dssp HTTEESS----SCEEEEEECCCCSC
T ss_pred hCCCEEC----CEEEEEEECCCCCC
Confidence 9999998 99999999875443
No 208
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.68 E-value=3.8e-16 Score=114.67 Aligned_cols=87 Identities=18% Similarity=0.217 Sum_probs=78.1
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHH
Q 022981 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIR 199 (289)
Q Consensus 120 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 199 (289)
...+.++|||+|||..+++++|+++|.+||.|..+.|+.+.. |+.++|||||+|.+.++|.+|++
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---------------~g~~~g~afV~f~~~~~A~~A~~ 73 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRF---------------TGMHKGCAFLTYCERESALKAQS 73 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSS---------------SCSCCSEEEEEESSHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC---------------CCCcceEEEEEECCHHHHHHHHH
Confidence 345667999999999999999999999999999999999877 67889999999999999999999
Q ss_pred hcCCccc---CCccccceeeeeccCCCCC
Q 022981 200 KLDDTEF---RNPWARGRITVKRYDRSPS 225 (289)
Q Consensus 200 ~~~~~~~---~~~~~g~~i~v~~~~~~~~ 225 (289)
.|++..+ . ++.|.|+.+.....
T Consensus 74 ~l~g~~~~~~~----g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 74 ALHEQKTLPGM----NRPIQVKPADSESR 98 (106)
T ss_dssp HHTTTCCCTTC----SSCCEEEECCCCSC
T ss_pred HhcCCcccCCC----CceEEEEECCcccc
Confidence 9999987 5 89999999875443
No 209
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=4.2e-16 Score=112.03 Aligned_cols=84 Identities=17% Similarity=0.209 Sum_probs=77.5
Q ss_pred CcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcC
Q 022981 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLD 202 (289)
Q Consensus 123 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~ 202 (289)
+.++|||+|||..+++++|.++|.+||.|..+.+..+.. ++.++|||||+|.+.++|.+|++.|+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~---------------~~~~~g~afV~f~~~~~a~~A~~~l~ 68 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSD---------------TGRSKGYGFITFSDSECARRALEQLN 68 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSS---------------SCCCCSEEEEEESCHHHHHHHHHHHT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCC---------------CCceeeEEEEEECCHHHHHHHHHHhC
Confidence 456999999999999999999999999999999999877 66889999999999999999999999
Q ss_pred CcccCCccccceeeeeccCCCCC
Q 022981 203 DTEFRNPWARGRITVKRYDRSPS 225 (289)
Q Consensus 203 ~~~~~~~~~g~~i~v~~~~~~~~ 225 (289)
+..+. |+.|.|+.+.....
T Consensus 69 g~~~~----g~~l~V~~a~~~~~ 87 (95)
T 2dnz_A 69 GFELA----GRPMRVGHVTERLD 87 (95)
T ss_dssp TCCSS----SSCCEEEESSCCCC
T ss_pred CCeeC----CcEEEEEEcccccC
Confidence 99998 99999999976444
No 210
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.8e-16 Score=115.00 Aligned_cols=88 Identities=15% Similarity=0.351 Sum_probs=78.3
Q ss_pred CCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcc-cccceEEEEecCChHHHHH
Q 022981 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLC-VYSGTYGVVDYTNPEDMKY 196 (289)
Q Consensus 118 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~g~~fv~f~~~~~a~~ 196 (289)
..+..+.++|||+|||..+++++|.++|..|| |..+.|+.+.. | +.++|||||+|.+.++|.+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~---------------~~g~~~g~afV~f~~~~~a~~ 72 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPS---------------NPERLKGFGYAEFEDLDSLLS 72 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSS---------------CTTSBCSCEEEEESSHHHHHH
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCC---------------CCCCcCeEEEEEECCHHHHHH
Confidence 34445678999999999999999999999999 99999998876 4 6889999999999999999
Q ss_pred HHHhcCCcccCCccccceeeeeccCCCCCC
Q 022981 197 AIRKLDDTEFRNPWARGRITVKRYDRSPSR 226 (289)
Q Consensus 197 a~~~~~~~~~~~~~~g~~i~v~~~~~~~~r 226 (289)
|+ .|++..+. ++.|.|+.+......
T Consensus 73 A~-~l~g~~~~----g~~l~V~~a~~~~~~ 97 (104)
T 1wi8_A 73 AL-SLNEESLG----NKRIRVDVADQAQDK 97 (104)
T ss_dssp HH-GGGTCEET----TEECEEEECCCCCCC
T ss_pred HH-hcCCCEeC----CcEEEEEEccCCCCC
Confidence 99 99999998 999999999765443
No 211
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.67 E-value=4.4e-16 Score=113.78 Aligned_cols=87 Identities=14% Similarity=0.223 Sum_probs=77.9
Q ss_pred CCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHH
Q 022981 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYA 197 (289)
Q Consensus 118 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 197 (289)
..+..+.++|||+|||..+++++|.++|.+|| |..+.|+.+.. |+.++|||||+|.+.++|.+|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~---------------~g~~~g~afV~f~~~~~a~~A 72 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKD---------------TDKFKGFCYVEFDEVDSLKEA 72 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSS---------------SCSEEEEEEEEESSHHHHHHH
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCC---------------CCccceEEEEEECCHHHHHHH
Confidence 34445678999999999999999999999997 99999999877 678899999999999999999
Q ss_pred HHhcCCcccCCccccceeeeeccCCCCC
Q 022981 198 IRKLDDTEFRNPWARGRITVKRYDRSPS 225 (289)
Q Consensus 198 ~~~~~~~~~~~~~~g~~i~v~~~~~~~~ 225 (289)
+ .|++..+. |+.|.|+.+.....
T Consensus 73 ~-~l~g~~~~----g~~l~V~~a~~~~~ 95 (103)
T 2dng_A 73 L-TYDGALLG----DRSLRVDIAEGRKQ 95 (103)
T ss_dssp G-GGTTCEET----TEECEEEECCCCCC
T ss_pred H-hhCCCeEC----CeEEEEEEecCCCC
Confidence 9 89999998 99999999875443
No 212
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.1e-16 Score=119.20 Aligned_cols=75 Identities=25% Similarity=0.403 Sum_probs=63.4
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC------CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEE
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP------PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 77 (289)
.++++|||+|||+++|+++|+++|++||+|. +.++.+ +.++|||||+|.+.++|++||+.|+ .++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 6789999999999999999999999999999 777543 4779999999999999999999883 356666665
Q ss_pred EEcc
Q 022981 78 ELAH 81 (289)
Q Consensus 78 ~~~~ 81 (289)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 5443
No 213
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=4.9e-16 Score=112.60 Aligned_cols=86 Identities=20% Similarity=0.194 Sum_probs=78.3
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhc
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKL 201 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 201 (289)
.+.++|||+|||..+++++|.++|.+||.|..+.|..+.. ++.++|||||+|.+.++|.+|++.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---------------~~~~~g~afV~f~~~~~a~~A~~~l 70 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSL---------------TKKPKGFAFVTFMFPEHAVKAYAEV 70 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTT---------------TCCCCSEEEEEESSHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCC---------------CCCcCeEEEEEECCHHHHHHHHHHh
Confidence 3567999999999999999999999999999999998876 5688999999999999999999999
Q ss_pred CCcccCCccccceeeeeccCCCCCC
Q 022981 202 DDTEFRNPWARGRITVKRYDRSPSR 226 (289)
Q Consensus 202 ~~~~~~~~~~g~~i~v~~~~~~~~r 226 (289)
++..+. ++.|.|..+......
T Consensus 71 ~g~~~~----g~~l~V~~a~~~~~~ 91 (99)
T 1whw_A 71 DGQVFQ----GRMLHVLPSTIKKEA 91 (99)
T ss_dssp TTEESS----SCEEEEEECCCCSTT
T ss_pred CCCEEC----CcEEEEEEcCCCccc
Confidence 999998 999999999765443
No 214
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.67 E-value=3.4e-16 Score=119.16 Aligned_cols=85 Identities=21% Similarity=0.218 Sum_probs=77.9
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 121 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
..+.++|||+|||..+++++|.++|.+||.|..+.|..++. ++.++|||||+|.+.++|.+|++.
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~---------------tg~~~G~afV~F~~~~~A~~Ai~~ 107 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQ---------------SRRSRGFAFVYFENVDDAKEAKER 107 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSS---------------SSCCCCEEEEEESCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC---------------CCccceEEEEEECCHHHHHHHHHH
Confidence 35567999999999999999999999999999999998877 678899999999999999999999
Q ss_pred cCCcccCCccccceeeeeccCCCC
Q 022981 201 LDDTEFRNPWARGRITVKRYDRSP 224 (289)
Q Consensus 201 ~~~~~~~~~~~g~~i~v~~~~~~~ 224 (289)
|++..+. |+.|.|+.+...+
T Consensus 108 lng~~i~----g~~l~V~~a~~~~ 127 (129)
T 2kxn_B 108 ANGMELD----GRRIRVDFSITKR 127 (129)
T ss_dssp HTTCCSS----SSCCEESCCSSSS
T ss_pred hCCCEEC----CEEEEEEEecCCC
Confidence 9999998 9999999987543
No 215
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.5e-16 Score=113.47 Aligned_cols=85 Identities=16% Similarity=0.202 Sum_probs=77.3
Q ss_pred CcceeeecCCCCCCCHHHHHHHHHhcCCeeEE-EEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhc
Q 022981 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA-EVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKL 201 (289)
Q Consensus 123 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 201 (289)
+.++|||+|||..+++++|.++|.+||.|..+ .|..++. ++.++|||||+|.+.++|.+|++.|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~---------------~g~~~g~afV~f~~~~~A~~A~~~l 68 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPD---------------TGNSKGYAFINFASFDASDAAIEAM 68 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTT---------------TCSCCSEEEEEBSSHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCC---------------CCCcCeEEEEEECCHHHHHHHHHHc
Confidence 45799999999999999999999999999999 8988766 6688999999999999999999999
Q ss_pred CCcccCCccccceeeeeccCCCCCC
Q 022981 202 DDTEFRNPWARGRITVKRYDRSPSR 226 (289)
Q Consensus 202 ~~~~~~~~~~g~~i~v~~~~~~~~r 226 (289)
++..+. |+.|.|+.+.....+
T Consensus 69 ~g~~~~----g~~l~v~~a~~~~~~ 89 (96)
T 1x5t_A 69 NGQYLC----NRPITVSYAFKKDSK 89 (96)
T ss_dssp TTCEET----TEECEEEESCCCCCC
T ss_pred CCCEEC----CEEEEEEEecccCCC
Confidence 999998 999999999765443
No 216
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.67 E-value=1.4e-16 Score=113.48 Aligned_cols=81 Identities=14% Similarity=0.122 Sum_probs=71.2
Q ss_pred ceeeecCCCCCCCHHHHHHHHHhcC--CeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcC
Q 022981 125 YRVIVRGLPSSASWQDLKDHMRKAG--DVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLD 202 (289)
Q Consensus 125 ~~l~v~nlp~~~~~~~l~~~f~~~g--~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~ 202 (289)
.+|||+|||..+++++|.++|.+|| .|..+.+..+.. ||.++|||||+|.+.++|.+|++.|+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~---------------~g~~kG~afV~f~~~~~a~~Ai~~l~ 66 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRA---------------NGQSKGFALVGVGSEASSKKLMDLLP 66 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTT---------------TCCEEEEEEECC-CHHHHHHHHHHGG
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCC---------------CCccCcEEEEEECCHHHHHHHHHHcC
Confidence 3799999999999999999999999 999999999877 67899999999999999999999999
Q ss_pred CcccCCccccceeeeeccCCCC
Q 022981 203 DTEFRNPWARGRITVKRYDRSP 224 (289)
Q Consensus 203 ~~~~~~~~~g~~i~v~~~~~~~ 224 (289)
+..+. |+.|.|..+...+
T Consensus 67 g~~~~----gr~i~V~~~~~~~ 84 (90)
T 3p5t_L 67 KRELH----GQNPVVTPSNKLE 84 (90)
T ss_dssp GSCSS----SCCCEECCC----
T ss_pred CCeeC----CEEEEEEECCCCc
Confidence 99998 9999999987544
No 217
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.67 E-value=1.2e-16 Score=114.80 Aligned_cols=85 Identities=11% Similarity=0.088 Sum_probs=73.2
Q ss_pred CcceeeecCCCCCCCHHHHHHHHHhcCC--eeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 123 SEYRVIVRGLPSSASWQDLKDHMRKAGD--VCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 123 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~--v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
.-.+|||+|||+.+++++|.++|++||. |..+.+++++. ||.++|||||+|.+.++|.+|++.
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~---------------tg~srG~aFV~f~~~~~A~~Ai~~ 72 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQ---------------TQQNRGFAFVQLSSAMDASQLLQI 72 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSS---------------SSSCSSEEEEECSSSHHHHHHHHH
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCC---------------CCCCceEeEEEECCHHHHHHHHHH
Confidence 4459999999999999999999999995 67899998887 779999999999999999999999
Q ss_pred cCCcccCCccccceeeeeccCC
Q 022981 201 LDDTEFRNPWARGRITVKRYDR 222 (289)
Q Consensus 201 ~~~~~~~~~~~g~~i~v~~~~~ 222 (289)
|++....-...|++|.|+.++.
T Consensus 73 lng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 73 LQSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp HHSSSSCEEETTEEEEEEECCC
T ss_pred hcCCCCCceECCEEEEEEEccC
Confidence 9997521112289999998864
No 218
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=6.8e-16 Score=113.14 Aligned_cols=86 Identities=16% Similarity=0.220 Sum_probs=77.6
Q ss_pred CCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHH
Q 022981 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAI 198 (289)
Q Consensus 119 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~ 198 (289)
......++|||+|||..+++++|+++|.+||.|..+.|..++. ++.++|||||+|.+.++|.+|+
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~---------------~g~~~g~afV~f~~~~~a~~a~ 75 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKT---------------TNQSRGFGFVKFKDPNCVGTVL 75 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSS---------------SCCEEEEEEEEESSTTHHHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC---------------CCCcceEEEEEECCHHHHHHHH
Confidence 3445678999999999999999999999999999999999877 6688999999999999999999
Q ss_pred HhcCCcccCCccccceeeeeccCCCC
Q 022981 199 RKLDDTEFRNPWARGRITVKRYDRSP 224 (289)
Q Consensus 199 ~~~~~~~~~~~~~g~~i~v~~~~~~~ 224 (289)
+. ++..+. |+.|.|+.+....
T Consensus 76 ~~-~~~~~~----g~~l~V~~a~~~~ 96 (105)
T 2dh8_A 76 AS-RPHTLD----GRNIDPKPCTPRG 96 (105)
T ss_dssp HH-CSEEET----TEEEBCCCSCCSS
T ss_pred Hh-CCCeEC----CEEEEEEEccCCC
Confidence 98 999988 8999999987443
No 219
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.66 E-value=1.9e-16 Score=117.04 Aligned_cols=82 Identities=33% Similarity=0.595 Sum_probs=71.4
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHHhcC-CeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHH
Q 022981 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIR 199 (289)
Q Consensus 121 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g-~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 199 (289)
....++|||+|||+.+++++|+++|.+|| .|..+.|... .++|||||+|.+.++|++|++
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~-------------------~~rGfaFV~F~~~e~A~~Ai~ 85 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR-------------------DFDGTGALEFPSEEILVEALE 85 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC-------------------SSSCCEEEEESSHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC-------------------CCCCEEEEEECCHHHHHHHHH
Confidence 34567999999999999999999999999 8999988642 247899999999999999999
Q ss_pred hcCCcccCCccccceeeeeccCCCCC
Q 022981 200 KLDDTEFRNPWARGRITVKRYDRSPS 225 (289)
Q Consensus 200 ~~~~~~~~~~~~g~~i~v~~~~~~~~ 225 (289)
.|++..+. |+.|.|+.+...+.
T Consensus 86 ~lng~~l~----Gr~i~V~~a~~~p~ 107 (111)
T 2jvr_A 86 RLNNIEFR----GSVITVERDDNPPP 107 (111)
T ss_dssp HTTTEEET----TEEEEEEESCC---
T ss_pred HcCCCEEC----CeEEEEEECCCCCC
Confidence 99999999 99999999876544
No 220
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.66 E-value=3.7e-16 Score=129.11 Aligned_cols=80 Identities=26% Similarity=0.471 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.+.++|||+|||+++++++|+++|++||.|..|.+..+ +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 45689999999999999999999999999999999654 577999999999999999999999999999999999999
Q ss_pred cCC
Q 022981 81 HGG 83 (289)
Q Consensus 81 ~~~ 83 (289)
...
T Consensus 203 ~~~ 205 (216)
T 2qfj_A 203 VTP 205 (216)
T ss_dssp SSC
T ss_pred cCC
Confidence 876
No 221
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.2e-15 Score=111.36 Aligned_cols=86 Identities=10% Similarity=0.118 Sum_probs=77.1
Q ss_pred CCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHH
Q 022981 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAI 198 (289)
Q Consensus 119 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~ 198 (289)
....+.++|||+|||..+++++|.++|.+||.|..+.|..+.. .++|||||+|.+.++|.+|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------------~~~g~afV~f~~~~~a~~A~ 72 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT-----------------SNDPYCFVEFYEHRDAAAAL 72 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC-----------------SSCCEEEEEESSHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC-----------------CCCCEEEEEECCHHHHHHHH
Confidence 3445678999999999999999999999999999999999865 35799999999999999999
Q ss_pred HhcCCcccCCccccceeeeeccCCCCC
Q 022981 199 RKLDDTEFRNPWARGRITVKRYDRSPS 225 (289)
Q Consensus 199 ~~~~~~~~~~~~~g~~i~v~~~~~~~~ 225 (289)
+.|++..+. |+.|.|+.+.....
T Consensus 73 ~~l~g~~~~----g~~l~V~~a~~~~~ 95 (103)
T 2cqi_A 73 AAMNGRKIL----GKEVKVNWATTPSS 95 (103)
T ss_dssp HHHTTEEET----TEEEEEEECCCTTC
T ss_pred HHhCCCCcC----CCeEEEEECCCCcc
Confidence 999999998 99999999976443
No 222
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.66 E-value=6.9e-16 Score=111.86 Aligned_cols=85 Identities=21% Similarity=0.256 Sum_probs=77.1
Q ss_pred CCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeE--------EEEeeCCCCCCchhHHHhhhhhcccccceEEEEecC
Q 022981 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF--------AEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYT 189 (289)
Q Consensus 118 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~--------~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~ 189 (289)
.++....++|||+|||..+++++|.++|.+||.|.. +.+..++. +|.++|||||+|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~---------------~g~~~G~afV~f~ 71 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRE---------------TGKLKGEATVSFD 71 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTT---------------TCSEEEEEEEEBS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCC---------------CCCeeeEEEEEEC
Confidence 344556789999999999999999999999999999 99999877 6788999999999
Q ss_pred ChHHHHHHHHhcCCcccCCccccceeeeeccC
Q 022981 190 NPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 190 ~~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~ 221 (289)
+.++|.+|++.|++..+. |+.|+|+.+.
T Consensus 72 ~~~~a~~Ai~~l~g~~~~----g~~l~V~~A~ 99 (99)
T 2la6_A 72 DPPSAKAAIDWFDGKEFS----GNPIKVSFAT 99 (99)
T ss_dssp SHHHHHHHHHHHTTCBSS----SSBCEEEECC
T ss_pred CHHHHHHHHHHhCCCEeC----CcEEEEEecC
Confidence 999999999999999998 8999998763
No 223
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=8.2e-16 Score=112.29 Aligned_cols=86 Identities=20% Similarity=0.299 Sum_probs=77.0
Q ss_pred CCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHH
Q 022981 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAI 198 (289)
Q Consensus 119 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~ 198 (289)
....+.++|||+|||..+++++|.++|.+||.|..+.|..+ .+ .+++||||+|.+.++|.+|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g----------------~~~g~afV~f~~~~~A~~A~ 72 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GG----------------RSKGFGFVCFSSPEEATKAV 72 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SS----------------SEEEEEEEEESSHHHHHHHH
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CC----------------CcCEEEEEEECCHHHHHHHH
Confidence 34456789999999999999999999999999999999987 43 67899999999999999999
Q ss_pred HhcCCcccCCccccceeeeeccCCCCC
Q 022981 199 RKLDDTEFRNPWARGRITVKRYDRSPS 225 (289)
Q Consensus 199 ~~~~~~~~~~~~~g~~i~v~~~~~~~~ 225 (289)
+.|++..+. ++.|.|+.+.....
T Consensus 73 ~~l~g~~~~----g~~l~V~~a~~~~~ 95 (103)
T 2d9p_A 73 TEMNGRIVA----TKPLYVALAQRKEE 95 (103)
T ss_dssp HHHTTCBSS----SSBCEEEECSSCCC
T ss_pred HHhCCCEeC----CcEEEEEEeccccc
Confidence 999999998 99999999875443
No 224
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.66 E-value=1.2e-15 Score=111.79 Aligned_cols=85 Identities=19% Similarity=0.208 Sum_probs=76.4
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhc
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKL 201 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 201 (289)
.+.++|||+|||..+++++|.++|.+||.|..+.|..+..+ .++|||||+|.+.++|.+|++.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g----------------~~~g~afV~f~~~~~A~~Ai~~l 76 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDG----------------SSKGCAFVKFSSHTEAQAAIHAL 76 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSS----------------CEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC----------------CcCcEEEEEeCCHHHHHHHHHHH
Confidence 45679999999999999999999999999999999987654 77899999999999999999999
Q ss_pred CCcccCCcccc---ceeeeeccCCCCCC
Q 022981 202 DDTEFRNPWAR---GRITVKRYDRSPSR 226 (289)
Q Consensus 202 ~~~~~~~~~~g---~~i~v~~~~~~~~r 226 (289)
++..+. + +.|.|+.+...+.+
T Consensus 77 ~g~~~~----gg~~~~l~V~~a~~~~~~ 100 (105)
T 2dnh_A 77 HGSQTM----PGASSSLVVKFADTDKES 100 (105)
T ss_dssp SSCCCC----TTCSSCCEEEESCSSCCC
T ss_pred cCCccC----CCCCccEEEEECccCccc
Confidence 999988 5 99999999765443
No 225
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=8.4e-16 Score=114.75 Aligned_cols=85 Identities=19% Similarity=0.176 Sum_probs=76.8
Q ss_pred CCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHH
Q 022981 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYA 197 (289)
Q Consensus 118 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 197 (289)
.....+.++|||+|||..+++++|+++|.+||.|..+.|..++. |+.++|||||+|.+.++|.+|
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---------------~~~~~g~afV~f~~~~~a~~A 75 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQ---------------TGKSRGYGFVTMADRAAAERA 75 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSS---------------SCCCCSEEEEEESSHHHHHHH
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCC---------------CCccceEEEEEECCHHHHHHH
Confidence 34445678999999999999999999999999999999998877 678899999999999999999
Q ss_pred HHhcCCcccCCccccceeeeeccCC
Q 022981 198 IRKLDDTEFRNPWARGRITVKRYDR 222 (289)
Q Consensus 198 ~~~~~~~~~~~~~~g~~i~v~~~~~ 222 (289)
++.+++ .+. ++.|.|+.+..
T Consensus 76 i~~~~~-~~~----g~~l~V~~a~~ 95 (116)
T 2cqd_A 76 CKDPNP-IID----GRKANVNLAYL 95 (116)
T ss_dssp HTCSSC-EET----TEECEEEESTT
T ss_pred HHhCCC-cCC----CEEEEEEEccc
Confidence 999998 777 89999999864
No 226
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.66 E-value=3.6e-16 Score=109.96 Aligned_cols=81 Identities=20% Similarity=0.240 Sum_probs=74.7
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhc
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKL 201 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 201 (289)
.+.++|||+|||..+++++|.++|.+||.|..+.++.+.. ++.++|||||+|.+.++|.+|++.|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~---------------~~~~~g~afV~f~~~~~a~~A~~~l 69 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYE---------------TEKHRGFAFVEFELAEDAAAAIDNM 69 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETT---------------TTEECSEEEEEESSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCC---------------CCccccEEEEEECCHHHHHHHHHHh
Confidence 3567999999999999999999999999999999988766 6688999999999999999999999
Q ss_pred CCcccCCccccceeeeeccC
Q 022981 202 DDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 202 ~~~~~~~~~~g~~i~v~~~~ 221 (289)
++..+. |+.|.|+.++
T Consensus 70 ~g~~~~----g~~l~v~~ak 85 (85)
T 3mdf_A 70 NESELF----GRTIRVNLAK 85 (85)
T ss_dssp TTCEET----TEECEEEECC
T ss_pred CCCEEC----CcEEEEEEcC
Confidence 999998 8999998763
No 227
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.66 E-value=2.1e-16 Score=131.77 Aligned_cols=77 Identities=25% Similarity=0.349 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCc---------cHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCcee----
Q 022981 4 RFSRTIYVGNLPSDI---------REYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF---- 70 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~---------t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---- 70 (289)
.++++|||+||+..+ ++++|+++|++||+|.+|.|+.. +|||||+|.+.++|+.|++.|+|..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~---kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~ 208 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES---KNCGFVKFKYQANAEFAKEAMSNQTLLLPS 208 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG---GTEEEEEESSHHHHHHHHHHHTTCCCCCTT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC---CCEEEEEeCCHHHHHHHHHHhCCCEEeccc
Confidence 578999999999998 89999999999999999999754 89999999999999999999999999
Q ss_pred --------CCceEEEEEccCC
Q 022981 71 --------DGCRLRVELAHGG 83 (289)
Q Consensus 71 --------~g~~l~v~~~~~~ 83 (289)
.|+.|.|.|++..
T Consensus 209 ~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 209 DKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp STTGGGGGGSCCCEEEECC--
T ss_pred cccccccCCCCEEEEEEccCC
Confidence 8999999999865
No 228
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.3e-16 Score=114.15 Aligned_cols=84 Identities=11% Similarity=0.102 Sum_probs=75.5
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 121 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
....++|||+|||..+++++|+++|.+||.|..+.++.+.. +|.++|||||+|.+.++|++|++.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~---------------~g~~~g~afV~f~~~~~a~~Ai~~ 76 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNE---------------KGMPTGEAMVAFESRDEATAAVID 76 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECS---------------SSCEEEEEEEEESCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECC---------------CCCeeeEEEEEECCHHHHHHHHHH
Confidence 34567999999999999999999999999998877777666 668899999999999999999999
Q ss_pred cCCcccCCccccceeeeeccCCC
Q 022981 201 LDDTEFRNPWARGRITVKRYDRS 223 (289)
Q Consensus 201 ~~~~~~~~~~~g~~i~v~~~~~~ 223 (289)
|++..+. |+.|.|+.+..+
T Consensus 77 l~g~~~~----g~~l~V~~a~~~ 95 (98)
T 2cqp_A 77 LNDRPIG----SRKVKLVLGSGP 95 (98)
T ss_dssp TTTCEET----TEECEEEESSCS
T ss_pred hCCCeeC----CeEEEEEEcCCC
Confidence 9999998 999999998653
No 229
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.66 E-value=4.8e-16 Score=111.74 Aligned_cols=83 Identities=23% Similarity=0.352 Sum_probs=75.2
Q ss_pred CCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHH
Q 022981 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAI 198 (289)
Q Consensus 119 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~ 198 (289)
.......+|||+|||..+++++|.++|.+||.|..+.|..+..+ .++|||||+|.+.++|.+|+
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g----------------~~~g~afV~f~~~~~a~~A~ 74 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREG----------------KPKSFGFVCFKHPESVSYAI 74 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTS----------------CEEEEEEEEESSTHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCC----------------CCceEEEEEECCHHHHHHHH
Confidence 34456789999999999999999999999999999999987664 67899999999999999999
Q ss_pred HhcCCcccCCccccceeeeeccC
Q 022981 199 RKLDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 199 ~~~~~~~~~~~~~g~~i~v~~~~ 221 (289)
+.|++..+. |+.|.|+.+.
T Consensus 75 ~~l~g~~~~----g~~l~V~~a~ 93 (95)
T 2ywk_A 75 ALLNGIRLY----GRPINVSGPS 93 (95)
T ss_dssp HHHTTCEET----TEECEEECCC
T ss_pred HHhCCCEEC----CCEEEEEEcC
Confidence 999999998 8999998875
No 230
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.3e-15 Score=111.26 Aligned_cols=86 Identities=22% Similarity=0.246 Sum_probs=77.0
Q ss_pred CCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHH
Q 022981 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAI 198 (289)
Q Consensus 119 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~ 198 (289)
....+.++|||+|||..+++++|.++|.+||.|..+.|..+.. .++|||||+|.+.++|.+|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~-----------------~~~g~afV~f~~~~~a~~A~ 72 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-----------------GSKGFGFVTFENSADADRAR 72 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT-----------------TTCCEEEEEESCHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-----------------CCcEEEEEEECCHHHHHHHH
Confidence 3445668999999999999999999999999999999998765 36899999999999999999
Q ss_pred HhcCCcccCCccccceeeeeccCCCCC
Q 022981 199 RKLDDTEFRNPWARGRITVKRYDRSPS 225 (289)
Q Consensus 199 ~~~~~~~~~~~~~g~~i~v~~~~~~~~ 225 (289)
+.|++..+. ++.|.|+.+.....
T Consensus 73 ~~l~g~~~~----g~~l~v~~a~~~~~ 95 (103)
T 2cq3_A 73 EKLHGTVVE----GRKIEVNNATARVM 95 (103)
T ss_dssp HHHTTCEET----TEECEEEECCSSCC
T ss_pred HHhCCCEEC----CEEEEEEEcccCCC
Confidence 999999998 99999999875443
No 231
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.66 E-value=5.6e-16 Score=108.46 Aligned_cols=80 Identities=15% Similarity=0.263 Sum_probs=74.9
Q ss_pred ceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCc
Q 022981 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDT 204 (289)
Q Consensus 125 ~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 204 (289)
++|||+|||..+++++|.++|.+||.|..+.+..++. ++.++|||||+|.+.++|.+|++.|++.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~---------------~~~~~g~afV~f~~~~~a~~a~~~l~g~ 66 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQ---------------TGSSRGYGFVSFTSQDDAQNAMDSMQGQ 66 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTT---------------TCCEEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCC---------------CCCccceEEEEECCHHHHHHHHHHhcCC
Confidence 5899999999999999999999999999999998876 6688999999999999999999999999
Q ss_pred ccCCccccceeeeeccCCC
Q 022981 205 EFRNPWARGRITVKRYDRS 223 (289)
Q Consensus 205 ~~~~~~~g~~i~v~~~~~~ 223 (289)
.+. |+.|.|+.+...
T Consensus 67 ~~~----g~~l~v~~a~~~ 81 (83)
T 3md1_A 67 DLN----GRPLRINWAAKL 81 (83)
T ss_dssp EET----TEECEEEECCCC
T ss_pred eeC----CcEEEEEecCcC
Confidence 998 999999988754
No 232
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.66 E-value=4.3e-16 Score=116.19 Aligned_cols=79 Identities=22% Similarity=0.339 Sum_probs=72.9
Q ss_pred cceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCC
Q 022981 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDD 203 (289)
Q Consensus 124 ~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~ 203 (289)
..+|||+|||..+++++|.++|.+||.|..+.|+.+.. .++|||||+|.+.++|.+|++.|++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~-----------------~~kg~afV~f~~~~~A~~Ai~~l~~ 67 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-----------------GSKGYGFVHFETQEAAERAIEKMNG 67 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-----------------EEEEEEEEEESCHHHHHHHHHHHTT
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC-----------------CCCceEEEEECCHHHHHHHHHHcCC
Confidence 45899999999999999999999999999999998765 4689999999999999999999999
Q ss_pred cccCCccccceeeeeccCCC
Q 022981 204 TEFRNPWARGRITVKRYDRS 223 (289)
Q Consensus 204 ~~~~~~~~g~~i~v~~~~~~ 223 (289)
..+. |+.|.|..+...
T Consensus 68 ~~~~----g~~i~V~~a~~~ 83 (115)
T 4f25_A 68 MLLN----DRKVFVGRFKSR 83 (115)
T ss_dssp CEET----TEECEEEESSCC
T ss_pred CEEC----CEEEEEEECCCc
Confidence 9998 999999988643
No 233
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=8.5e-16 Score=114.16 Aligned_cols=86 Identities=23% Similarity=0.382 Sum_probs=77.9
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHHhcCCee--------EEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChH
Q 022981 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVC--------FAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPE 192 (289)
Q Consensus 121 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~--------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~ 192 (289)
....++|||+|||..+++++|.++|.+||.|. .+.|..+.. ++.++|||||+|.+.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~---------------~g~~~g~afV~f~~~~ 76 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKE---------------TGKPKGDATVSYEDPP 76 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTT---------------TCSBCSEEEEEBSSHH
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCC---------------CCCeeeEEEEEECCHH
Confidence 45667999999999999999999999999999 688888766 6788999999999999
Q ss_pred HHHHHHHhcCCcccCCccccceeeeeccCCCCC
Q 022981 193 DMKYAIRKLDDTEFRNPWARGRITVKRYDRSPS 225 (289)
Q Consensus 193 ~a~~a~~~~~~~~~~~~~~g~~i~v~~~~~~~~ 225 (289)
+|.+|++.|++..+. |+.|.|+.+.....
T Consensus 77 ~A~~Ai~~l~g~~~~----g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 77 TAKAAVEWFDGKDFQ----GSKLKVSLARKKPP 105 (113)
T ss_dssp HHHHHHHHHTTCEET----TEECEEECSSCCCC
T ss_pred HHHHHHHHcCCCccC----CCEEEEEECCCCCC
Confidence 999999999999998 99999999876544
No 234
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=9.6e-16 Score=111.05 Aligned_cols=83 Identities=8% Similarity=0.115 Sum_probs=75.9
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHhcCCee-EEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVC-FAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
.+.++|||+|||..+++++|.++|.+||.|. .+.|..++. ++.++|||||+|.+.++|++|++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~---------------~g~~~g~afV~f~~~~~a~~A~~~ 71 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRL---------------TGIPAGYCFVEFADLATAEKCLHK 71 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSS---------------SCCEEEEEEEECSCHHHHHHHHHT
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCC---------------CCCcCCEEEEEeCCHHHHHHHHHH
Confidence 3567999999999999999999999999999 999999876 678899999999999999999999
Q ss_pred cCCcccCCccccce----eeeeccCCC
Q 022981 201 LDDTEFRNPWARGR----ITVKRYDRS 223 (289)
Q Consensus 201 ~~~~~~~~~~~g~~----i~v~~~~~~ 223 (289)
|++..+. ++. |+|..+...
T Consensus 72 l~g~~~~----g~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 72 INGKPLP----GATPAKRFKLNYATYS 94 (99)
T ss_dssp TTTSEES----SCSSCEECCEEETTCC
T ss_pred HcCCccC----CCCcceeEEEeecCCC
Confidence 9999998 677 999988754
No 235
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.65 E-value=3.8e-16 Score=124.41 Aligned_cols=77 Identities=22% Similarity=0.440 Sum_probs=71.7
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
+.++|||+|||+++++++|+++|++||+|..|.+.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.+|.
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 468999999999999999999999999999999954 45778999999999999999999999999999999999873
No 236
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=7.8e-16 Score=112.98 Aligned_cols=83 Identities=18% Similarity=0.291 Sum_probs=76.8
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhc
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKL 201 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 201 (289)
.+.++|||+|||..+++++|.++|.+||.|..+.|..+.. ||.++|||||+|.+.++|.+|++.|
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~---------------~~~~~g~afV~f~~~~~a~~A~~~l 85 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRR---------------TGYLKGYTLVEYETYKEAQAAMEGL 85 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT---------------TSSEEEEEEEEESCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCC---------------CCceeeEEEEEECCHHHHHHHHHHh
Confidence 4567999999999999999999999999999999999877 6788999999999999999999999
Q ss_pred CCcccCCccccceeeeeccCCC
Q 022981 202 DDTEFRNPWARGRITVKRYDRS 223 (289)
Q Consensus 202 ~~~~~~~~~~g~~i~v~~~~~~ 223 (289)
++..+. |+.|.|+.+...
T Consensus 86 ~g~~~~----g~~l~V~~a~~~ 103 (106)
T 1p27_B 86 NGQDLM----GQPISVDWCFVR 103 (106)
T ss_dssp TTCBSS----SSBCEEEESEES
T ss_pred cCCEEC----CcEEEEEeecCC
Confidence 999998 899999988643
No 237
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.65 E-value=6.4e-16 Score=125.90 Aligned_cols=80 Identities=23% Similarity=0.446 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 80 (289)
.+.++|||+|||+.+++++|+++|++||.|..|.+.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4679999999999999999999999999999999964 4677999999999999999999999999999999999999
Q ss_pred cCC
Q 022981 81 HGG 83 (289)
Q Consensus 81 ~~~ 83 (289)
.+.
T Consensus 192 ~~~ 194 (198)
T 2yh0_A 192 SVG 194 (198)
T ss_dssp CCC
T ss_pred CCC
Confidence 865
No 238
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.65 E-value=3.7e-16 Score=124.96 Aligned_cols=78 Identities=23% Similarity=0.351 Sum_probs=72.7
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCC
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (289)
.+.++|||+|||+++++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.++
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE--CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe--cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 356899999999999999999999999999887 567788999999999999999999999999999999999999764
No 239
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=7.2e-16 Score=114.42 Aligned_cols=79 Identities=22% Similarity=0.340 Sum_probs=70.4
Q ss_pred CCCCeEEEcCCCCCc-----------cHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCC
Q 022981 4 RFSRTIYVGNLPSDI-----------REYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~-----------t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 72 (289)
.++++|+|.||.... ++++|+++|++||.|..|.| .+..++|||||+|.+.++|++|+..|||..|.|
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 678999999994433 26899999999999999966 555689999999999999999999999999999
Q ss_pred ceEEEEEccCC
Q 022981 73 CRLRVELAHGG 83 (289)
Q Consensus 73 ~~l~v~~~~~~ 83 (289)
+.|.|.++.+.
T Consensus 92 r~l~v~~a~~~ 102 (112)
T 2dit_A 92 RQITAQAWDGT 102 (112)
T ss_dssp EECEEEECCSC
T ss_pred cEEEEEEeCCC
Confidence 99999999765
No 240
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.65 E-value=6.5e-16 Score=111.34 Aligned_cols=81 Identities=16% Similarity=0.206 Sum_probs=75.5
Q ss_pred cceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCC
Q 022981 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDD 203 (289)
Q Consensus 124 ~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~ 203 (289)
.++|||+|||..+++++|.++|++||.|..+.+..+.. +|.++|||||+|.+.++|.+|++.|++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---------------~g~~~g~afV~f~~~~~A~~Ai~~l~g 66 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQ---------------TGRSKGYAFIEFRDLESSASAVRNLNG 66 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTT---------------TCCBCSEEEEEESSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCC---------------CCccceEEEEEECCHHHHHHHHHHhCC
Confidence 46999999999999999999999999999999998876 668899999999999999999999999
Q ss_pred cccCCccccceeeeeccCCC
Q 022981 204 TEFRNPWARGRITVKRYDRS 223 (289)
Q Consensus 204 ~~~~~~~~g~~i~v~~~~~~ 223 (289)
..+. |+.|.|+.+...
T Consensus 67 ~~~~----g~~l~V~~a~~~ 82 (96)
T 2x1f_A 67 YQLG----SRFLKCGYSSNS 82 (96)
T ss_dssp CEET----TEECEEEECSCS
T ss_pred CeEC----CeEEEEEEcCCC
Confidence 9998 899999998754
No 241
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.64 E-value=1.2e-15 Score=112.40 Aligned_cols=87 Identities=20% Similarity=0.221 Sum_probs=78.7
Q ss_pred CCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHH
Q 022981 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYA 197 (289)
Q Consensus 118 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 197 (289)
.....+.++|||+|||..+++++|.++|.+||.|..+.+..++. +|.++|||||+|.+.++|.+|
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~---------------~g~~~g~afV~F~~~~~A~~A 84 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSE---------------TGRSKGYGFITFSDSECAKKA 84 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETT---------------TTEEEEEEEEEESCHHHHHHH
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC---------------CCccceEEEEEECCHHHHHHH
Confidence 33445677999999999999999999999999999999998876 668899999999999999999
Q ss_pred HHhcCCcccCCccccceeeeeccCCC
Q 022981 198 IRKLDDTEFRNPWARGRITVKRYDRS 223 (289)
Q Consensus 198 ~~~~~~~~~~~~~~g~~i~v~~~~~~ 223 (289)
++.|++..+. |+.|.|+.+...
T Consensus 85 i~~l~g~~i~----g~~l~V~~a~~k 106 (108)
T 2jrs_A 85 LEQLNGFELA----GRPMKVGHVTER 106 (108)
T ss_dssp HHHHTTCCSS----SSCCEEECSCSS
T ss_pred HHHcCCCEEC----CEEEEEEEcccC
Confidence 9999999998 999999988643
No 242
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.64 E-value=2.3e-16 Score=125.05 Aligned_cols=78 Identities=22% Similarity=0.472 Sum_probs=72.6
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
+.++|||+|||+++++++|.++|++||.|..+.+.. ++.++|||||+|.+.++|.+|++ |++..|.|+.|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 467899999999999999999999999999999965 46889999999999999999999 99999999999999998
Q ss_pred CC
Q 022981 82 GG 83 (289)
Q Consensus 82 ~~ 83 (289)
+.
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 243
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.64 E-value=2.6e-15 Score=115.73 Aligned_cols=88 Identities=17% Similarity=0.218 Sum_probs=79.7
Q ss_pred CCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHH
Q 022981 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAI 198 (289)
Q Consensus 119 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~ 198 (289)
+.....++|||+|||..+++++|.++|..||.|..+.|..+.. |+.++|||||+|.+.++|.+|+
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~---------------~~~~~g~afV~f~~~~~a~~A~ 101 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRE---------------TRQSRGYGFVKFQSGSSAQQAI 101 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETT---------------TTEEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC---------------CCCcceEEEEEECCHHHHHHHH
Confidence 3445667999999999999999999999999999999999877 6788999999999999999999
Q ss_pred HhcCCcccCCccccceeeeeccCCCCC
Q 022981 199 RKLDDTEFRNPWARGRITVKRYDRSPS 225 (289)
Q Consensus 199 ~~~~~~~~~~~~~g~~i~v~~~~~~~~ 225 (289)
+.|++..+. |+.|.|+.+.....
T Consensus 102 ~~l~g~~~~----g~~l~v~~a~~~~~ 124 (139)
T 1u6f_A 102 AGLNGFNIL----NKRLKVALAASGHQ 124 (139)
T ss_dssp HHTTTEECS----SCEEEEEESSCCCC
T ss_pred HHhCCCEEC----CeEEEEEECCCCCC
Confidence 999999998 99999999975443
No 244
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.64 E-value=4.1e-16 Score=115.87 Aligned_cols=77 Identities=23% Similarity=0.345 Sum_probs=68.2
Q ss_pred CeEEEcCC----CCCccHHHHHHHHhhcCCeeEEEEccC---CCCCceEEEEEcc----HHH----HHHHHH--HhCCce
Q 022981 7 RTIYVGNL----PSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFEN----ARD----AEDAIR--GRDGYN 69 (289)
Q Consensus 7 ~~l~V~nL----p~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~g~afV~f~~----~~~----A~~A~~--~l~g~~ 69 (289)
..|||+|| |+.+++++|+++|+.||+|.+|.++.| +.++|||||+|.+ +++ |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 999999999999999999999999664 6889999999996 444 788988 789999
Q ss_pred eCCceEEEEEccCC
Q 022981 70 FDGCRLRVELAHGG 83 (289)
Q Consensus 70 ~~g~~l~v~~~~~~ 83 (289)
|+|+.|.|.+-...
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999987644
No 245
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.64 E-value=7.6e-16 Score=125.27 Aligned_cols=79 Identities=23% Similarity=0.402 Sum_probs=71.1
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
+.++|||+|||+++|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|.+|+.. ++..|.|+.|.|.++.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 468999999999999999999999999999999965 467899999999999999999994 8999999999999998
Q ss_pred CCC
Q 022981 82 GGS 84 (289)
Q Consensus 82 ~~~ 84 (289)
+..
T Consensus 182 ~k~ 184 (196)
T 1l3k_A 182 SKQ 184 (196)
T ss_dssp ---
T ss_pred Chh
Confidence 764
No 246
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.64 E-value=3e-16 Score=114.08 Aligned_cols=80 Identities=20% Similarity=0.243 Sum_probs=74.9
Q ss_pred CcceeeecCCCC------CCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHH
Q 022981 123 SEYRVIVRGLPS------SASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKY 196 (289)
Q Consensus 123 ~~~~l~v~nlp~------~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~ 196 (289)
..++|||+|||. .+++++|.++|++||.|..+.|+.+.. ||.++|||||+|.+.++|.+
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~---------------tg~~kG~afV~f~~~~~A~~ 69 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEA---------------TGKTKGFLFVECGSMNDAKK 69 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETT---------------TTEECSEEEEEESSHHHHHH
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCC---------------CCccceEEEEEECCHHHHHH
Confidence 456999999999 999999999999999999999999887 77999999999999999999
Q ss_pred HHHhcCCcccCCcccc-ceeeeeccC
Q 022981 197 AIRKLDDTEFRNPWAR-GRITVKRYD 221 (289)
Q Consensus 197 a~~~~~~~~~~~~~~g-~~i~v~~~~ 221 (289)
|++.|+|..+. | +.|.|..+.
T Consensus 70 Ai~~lng~~~~----g~r~l~V~~a~ 91 (100)
T 3ns6_A 70 IIKSFHGKRLD----LKHRLFLYTMK 91 (100)
T ss_dssp HHHHHTTCBSS----SSCBCEEEESH
T ss_pred HHHHhCCcccC----CCeEEEEEECc
Confidence 99999999998 7 999998874
No 247
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.4e-15 Score=110.04 Aligned_cols=86 Identities=20% Similarity=0.345 Sum_probs=75.8
Q ss_pred CcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcC
Q 022981 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLD 202 (289)
Q Consensus 123 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~ 202 (289)
+.++|||+|||..+++++|.++|.+||.|..+.|..+... .-|+.++|||||+|.+.++|.+|++.|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~------------~gt~~~~g~afV~f~~~~~a~~A~~~l~ 71 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNK------------AGVLLSMGFGFVEYKKPEQAQKALKQLQ 71 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECT------------TCCEEEEEEEEEEESSHHHHHHHHHHST
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC------------CCCcCcccEEEEEECCHHHHHHHHHHhC
Confidence 4569999999999999999999999999999999986551 0045789999999999999999999999
Q ss_pred CcccCCccccceeeeeccCCCC
Q 022981 203 DTEFRNPWARGRITVKRYDRSP 224 (289)
Q Consensus 203 ~~~~~~~~~g~~i~v~~~~~~~ 224 (289)
+..+. |+.|.|+.+....
T Consensus 72 g~~~~----g~~l~V~~a~~~~ 89 (98)
T 2cpf_A 72 GHTVD----GHKLEVRISERAT 89 (98)
T ss_dssp TCEET----TEECEEECSSCSS
T ss_pred CCeeC----CeEEEEEEccCCC
Confidence 99998 9999999987543
No 248
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.63 E-value=1.4e-15 Score=116.00 Aligned_cols=82 Identities=11% Similarity=0.172 Sum_probs=75.3
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHhcCCeeE--EEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHH
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF--AEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIR 199 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 199 (289)
....+|||+|||+.+++++|.++|.+||.|.. +.|+.+.. ||.++|||||+|.+. +|.+|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~---------------tg~~rG~aFV~f~~~-~a~~Ai~ 84 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQ---------------TQLNRGFAFIQLSTI-EAAQLLQ 84 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSS---------------SSSBCSCEEEECCHH-HHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCC---------------CCCcceEEEEEECCH-HHHHHHH
Confidence 45679999999999999999999999999976 99999887 679999999999999 9999999
Q ss_pred hcCCc----ccCCccccceeeeeccCCC
Q 022981 200 KLDDT----EFRNPWARGRITVKRYDRS 223 (289)
Q Consensus 200 ~~~~~----~~~~~~~g~~i~v~~~~~~ 223 (289)
.|++. .+. |+.|.|+.+...
T Consensus 85 ~l~g~~~~~~~~----gr~l~V~~a~~~ 108 (131)
T 2m2b_A 85 ILQALHPPLTID----GKTINVEFAKGS 108 (131)
T ss_dssp HHTTCCCSCCGG----GCCCCCEECCCS
T ss_pred HhcCCCCCccCC----CEEEEEEECCCC
Confidence 99999 877 999999998753
No 249
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.63 E-value=8.1e-16 Score=122.66 Aligned_cols=77 Identities=18% Similarity=0.294 Sum_probs=70.4
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC--CCCCceEEEEEccHHHHHHHHHHhCCceeC---CceEEEEE
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFD---GCRLRVEL 79 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~v~~ 79 (289)
+.++|||+|||+++|+++|+++|++||.|..|.+..+ +.++|||||+|.+.++|.+|+..|||..+. +++|.|.|
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 6789999999999999999999999999999999654 567899999999999999999999998776 49999999
Q ss_pred cc
Q 022981 80 AH 81 (289)
Q Consensus 80 ~~ 81 (289)
+.
T Consensus 174 ad 175 (175)
T 3nmr_A 174 AD 175 (175)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 250
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.63 E-value=2.1e-15 Score=112.94 Aligned_cols=83 Identities=22% Similarity=0.329 Sum_probs=75.5
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHH
Q 022981 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIR 199 (289)
Q Consensus 120 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 199 (289)
...+.++|||+|||..+++++|+++|.+||.|..+.|..+.. +|.++|||||+|.+.++|.+|++
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~---------------~g~~~g~afV~f~~~~~A~~A~~ 100 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQ---------------TSLSKCFGFVSFDNPDSAQVAIK 100 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSS---------------SSCCCCEEEEEEESSHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCC---------------CCCcCcEEEEEECCHHHHHHHHH
Confidence 345668999999999999999999999999999999998876 67889999999999999999999
Q ss_pred hcCCcccCCccccceeeeeccC
Q 022981 200 KLDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 200 ~~~~~~~~~~~~g~~i~v~~~~ 221 (289)
.|++..+. |+.|+|+.++
T Consensus 101 ~l~g~~~~----g~~l~V~~ak 118 (118)
T 2khc_A 101 AMNGFQVG----TKRLKVQLKK 118 (118)
T ss_dssp HCCCCEET----TEECCEEEC-
T ss_pred HcCCCEEC----CEEEEEEecC
Confidence 99999998 8999998763
No 251
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.63 E-value=1.2e-15 Score=108.01 Aligned_cols=83 Identities=14% Similarity=0.240 Sum_probs=74.8
Q ss_pred CcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccc-cceEEEEecCChHHHHHHHHhc
Q 022981 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVY-SGTYGVVDYTNPEDMKYAIRKL 201 (289)
Q Consensus 123 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~g~~fv~f~~~~~a~~a~~~~ 201 (289)
..++|||+|||..+++++|.++|.+||.|..+.+..+.. ++. ++|||||+|.+.++|.+|++.|
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~---------------~~~~~~g~afV~f~~~~~a~~A~~~l 67 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERM---------------HPHLSKGYAYVEFENPDEAEKALKHM 67 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETT---------------EEEEECSEEEEEESSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCC---------------CCCCCCcEEEEEEecHHHHHHHHHHc
Confidence 346999999999999999999999999999999998776 333 7899999999999999999999
Q ss_pred CCcccCCccccceeeeeccCCCC
Q 022981 202 DDTEFRNPWARGRITVKRYDRSP 224 (289)
Q Consensus 202 ~~~~~~~~~~g~~i~v~~~~~~~ 224 (289)
++..+. |+.|.|+.+....
T Consensus 68 ~g~~~~----g~~l~v~~a~~~~ 86 (88)
T 4a8x_A 68 DGGQID----GQEITATAVLAPW 86 (88)
T ss_dssp TTCEET----TEECEEEEECCCC
T ss_pred CCCeEC----CeEEEEEECCCCC
Confidence 999998 9999999886543
No 252
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.63 E-value=1.2e-15 Score=112.86 Aligned_cols=85 Identities=15% Similarity=0.212 Sum_probs=77.5
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 121 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
..+.++|||+|||..+++++|.++|.+||.|..+.+..+.. +|.++|||||+|.+.++|.+|+..
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---------------~~~~~g~afV~f~~~~~A~~Ai~~ 87 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRR---------------TGFSKGYALVEYETHKQALAAKEA 87 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTT---------------TSSBCSEEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC---------------CCCcceEEEEEECCHHHHHHHHHH
Confidence 34567999999999999999999999999999999998876 678899999999999999999999
Q ss_pred cCCcccCCccccceeeeeccCCCC
Q 022981 201 LDDTEFRNPWARGRITVKRYDRSP 224 (289)
Q Consensus 201 ~~~~~~~~~~~g~~i~v~~~~~~~ 224 (289)
|++..+. |+.|.|..+...+
T Consensus 88 l~g~~~~----g~~l~V~~a~~~~ 107 (110)
T 1oo0_B 88 LNGAEIM----GQTIQVDWCFVKG 107 (110)
T ss_dssp HTTCEET----TEECEEEESEESS
T ss_pred cCCCEEC----CcEEEEEEcccCC
Confidence 9999998 9999999886433
No 253
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.63 E-value=1.1e-15 Score=124.38 Aligned_cols=77 Identities=17% Similarity=0.361 Sum_probs=70.2
Q ss_pred CCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc--CCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEccCC
Q 022981 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (289)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (289)
.++|||+|||+++|+++|+++|++||+|..|.|.. ++.++|||||+|.+.++|++|+..+ +..|.|+.|.|.++...
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 47999999999999999999999999999999965 3677999999999999999999855 56999999999998765
No 254
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.63 E-value=7.7e-16 Score=117.92 Aligned_cols=85 Identities=21% Similarity=0.274 Sum_probs=76.2
Q ss_pred CCCCCCCCcceeeecCCCCCCCHHHHHHHHHhcCC---eeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChH
Q 022981 116 RFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGD---VCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPE 192 (289)
Q Consensus 116 ~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~---v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~ 192 (289)
...++....++|||+|||+.+++++|.++|+.||. |..+.|+.+..| +++|||||+|.+.+
T Consensus 36 ~~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g----------------~srG~aFV~F~~~e 99 (136)
T 2hgl_A 36 MLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREG----------------RQSGEAFVELGSED 99 (136)
T ss_dssp CSCSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSS----------------CEEEEEEEECSSHH
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCC----------------CCCeEEEEEECCHH
Confidence 33455567789999999999999999999999999 889999988764 78999999999999
Q ss_pred HHHHHHHhcCCcccCCccccceeeeeccC
Q 022981 193 DMKYAIRKLDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 193 ~a~~a~~~~~~~~~~~~~~g~~i~v~~~~ 221 (289)
+|.+|++ +++..+. ++.|.|..+.
T Consensus 100 ~a~~Al~-~~g~~l~----gr~i~V~~a~ 123 (136)
T 2hgl_A 100 DVKMALK-KDRESMG----HRYIEVFKSH 123 (136)
T ss_dssp HHHHHHT-TTEEESS----SSEEEEEECC
T ss_pred HHHHHHh-cCCCEEC----CEEEEEEECC
Confidence 9999999 9999998 8999998874
No 255
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.62 E-value=2.2e-15 Score=116.12 Aligned_cols=82 Identities=21% Similarity=0.242 Sum_probs=74.6
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHH
Q 022981 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIR 199 (289)
Q Consensus 120 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 199 (289)
...+..+|||+|||..+++++|.++|.+||.|..+.|..++. ++.++|||||+|.+.++|.+|++
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~---------------~~~~~g~afV~f~~~~~a~~A~~ 123 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYE---------------TEKHRGFAFVEFELAEDAAAAID 123 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTT---------------TCCCCSEEEEEESCHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCC---------------CCCcCcEEEEEECCHHHHHHHHH
Confidence 344677999999999999999999999999999999998876 66889999999999999999999
Q ss_pred hcCCcccCCccccceeeeecc
Q 022981 200 KLDDTEFRNPWARGRITVKRY 220 (289)
Q Consensus 200 ~~~~~~~~~~~~g~~i~v~~~ 220 (289)
.|++..+. |+.|.|+.+
T Consensus 124 ~l~g~~~~----g~~l~v~~A 140 (140)
T 2ku7_A 124 NMNESELF----GRTIRVNLA 140 (140)
T ss_dssp HSTEEEET----TEEEEEEC-
T ss_pred HhCCCEEC----CEEEEEEeC
Confidence 99999998 899999764
No 256
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.62 E-value=1.2e-15 Score=120.85 Aligned_cols=77 Identities=30% Similarity=0.493 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCC--ceEEEE
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVE 78 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~ 78 (289)
.+.++|||+|||+.+++++|+++|++||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|.| ++|.|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 4678999999999999999999999999999999965 45678999999999999999999999999988 999999
Q ss_pred Ec
Q 022981 79 LA 80 (289)
Q Consensus 79 ~~ 80 (289)
+|
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 257
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=5.4e-15 Score=108.06 Aligned_cols=84 Identities=20% Similarity=0.202 Sum_probs=75.8
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHh-cCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRK-AGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~-~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
.+.++|||+|||..+++++|.++|.+ ||.|..+.|..+..+ .++|||||+|.+.++|.+|++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g----------------~~~g~afV~f~~~~~a~~A~~~ 70 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTG----------------VSKGYGFVKFTDELEQKRALTE 70 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTC----------------CEEEEEEEEESCHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCC----------------CccceEEEEECCHHHHHHHHHH
Confidence 45679999999999999999999999 999999999987653 6789999999999999999999
Q ss_pred cCCcc-cCCccccceeeeeccCCCCC
Q 022981 201 LDDTE-FRNPWARGRITVKRYDRSPS 225 (289)
Q Consensus 201 ~~~~~-~~~~~~g~~i~v~~~~~~~~ 225 (289)
|++.. +. |+.|.|+.+.....
T Consensus 71 l~g~~~~~----g~~l~v~~a~~~~~ 92 (104)
T 2dhg_A 71 CQGAVGLG----SKPVRLSVAIPKAS 92 (104)
T ss_dssp TTTCCSSS----SSCCCCCBCCCCCS
T ss_pred ccCCcccC----CEeEEEEEccCCCc
Confidence 99999 88 89999999865443
No 258
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6.1e-15 Score=107.60 Aligned_cols=85 Identities=22% Similarity=0.255 Sum_probs=74.5
Q ss_pred CCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHH
Q 022981 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAI 198 (289)
Q Consensus 119 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~ 198 (289)
....+.++|||+|||..+++++|.++|.+||.|..+.|+.+.. ++.++|||||+|.+.++|.+|+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---------------~g~~~g~afV~f~~~~~a~~A~ 74 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLK---------------TGHSKGFGFVRFTEYETQVKVM 74 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSS---------------SCSEEEEEEEEESSHHHHHHHH
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCC---------------CCCccceEEEEECCHHHHHHHH
Confidence 3445667999999999999999999999999999999999877 6788999999999999999999
Q ss_pred HhcCCcccCCccccceeeeeccCCCC
Q 022981 199 RKLDDTEFRNPWARGRITVKRYDRSP 224 (289)
Q Consensus 199 ~~~~~~~~~~~~~g~~i~v~~~~~~~ 224 (289)
.. +..+. |+.|.|+.+....
T Consensus 75 ~~--~~~~~----g~~l~v~~a~~~~ 94 (103)
T 2cqg_A 75 SQ--RHMID----GRWCDCKLPNSKQ 94 (103)
T ss_dssp HS--CEEET----TEEEEEECCCTTC
T ss_pred Hc--CCeeC----CeEEEEEecCCCC
Confidence 84 55666 8999999987543
No 259
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.62 E-value=3.3e-15 Score=106.69 Aligned_cols=82 Identities=26% Similarity=0.450 Sum_probs=74.4
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhc
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKL 201 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 201 (289)
.+.++|||+|||..+++++|+++|.+||.|..+.|..+ ++.++|||||+|.+.++|.+|++.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-----------------~g~~~g~afV~f~~~~~a~~a~~~l 68 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-----------------NGKSKGCGVVKFESPEVAERACRMM 68 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-----------------SSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-----------------CCCcceEEEEEECCHHHHHHHHHHh
Confidence 45679999999999999999999999999999999873 3478999999999999999999999
Q ss_pred CCcccCCccccceeeeeccCCCC
Q 022981 202 DDTEFRNPWARGRITVKRYDRSP 224 (289)
Q Consensus 202 ~~~~~~~~~~g~~i~v~~~~~~~ 224 (289)
++..+. |+.|.|+.+....
T Consensus 69 ~g~~~~----g~~l~v~~a~~~~ 87 (92)
T 2dgv_A 69 NGMKLS----GREIDVRIDRNAS 87 (92)
T ss_dssp TTCCBT----TBCCCCEECSCCS
T ss_pred CCCEEC----CcEEEEEEcCCCC
Confidence 999998 8999999987543
No 260
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.7e-15 Score=110.85 Aligned_cols=83 Identities=18% Similarity=0.135 Sum_probs=73.3
Q ss_pred CCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeE-EEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHH
Q 022981 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF-AEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYA 197 (289)
Q Consensus 119 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 197 (289)
++....++|||+|||+.+++++|.++|..||.|.. +.|..+ . +|+++|||||+|.+.++|.+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~---------------~g~~~G~afV~F~~~~~a~~A 73 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-F---------------QGRSTGEAFVQFASQEIAEKA 73 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-S---------------SSCBCSEEEEEESSHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-C---------------CCCcceEEEEEECCHHHHHHH
Confidence 44456789999999999999999999999999987 778776 3 568899999999999999999
Q ss_pred HHhcCCcccCCccccceeeeeccCC
Q 022981 198 IRKLDDTEFRNPWARGRITVKRYDR 222 (289)
Q Consensus 198 ~~~~~~~~~~~~~~g~~i~v~~~~~ 222 (289)
++. ++..+. ++.|.|..+..
T Consensus 74 ~~~-~~~~~~----gr~i~v~~~~~ 93 (104)
T 1wg5_A 74 LKK-HKERIG----HRYIEIFKSSR 93 (104)
T ss_dssp HTT-TTCCSS----SSCCEEEEECT
T ss_pred HHh-CcchhC----CcEEEEEECCH
Confidence 997 999888 89999988754
No 261
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.4e-15 Score=108.43 Aligned_cols=82 Identities=20% Similarity=0.187 Sum_probs=74.6
Q ss_pred CCcceeeecCCCCCCCHHHHH----HHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHH
Q 022981 122 HSEYRVIVRGLPSSASWQDLK----DHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYA 197 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~----~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 197 (289)
...++|||+|||..+++++|+ ++|.+||.|..+.|..+..+ ++||||+|.+.++|.+|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~------------------rg~afV~f~~~~~A~~A 68 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY------------------QLKAVVQMENLQDAIGA 68 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST------------------TCCEEEEESSHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC------------------CeEEEEEECCHHHHHHH
Confidence 456799999999999999999 99999999999999987762 68999999999999999
Q ss_pred HHhcCCcccCCccccceeeeeccCCCCC
Q 022981 198 IRKLDDTEFRNPWARGRITVKRYDRSPS 225 (289)
Q Consensus 198 ~~~~~~~~~~~~~~g~~i~v~~~~~~~~ 225 (289)
++.|++..+. |+.|+|+.+...+.
T Consensus 69 i~~l~g~~~~----gr~l~V~~a~~~~~ 92 (96)
T 2dgx_A 69 VNSLHRYKIG----SKKILVSLATGASG 92 (96)
T ss_dssp HHHHTTEEET----TEEEEEEECCCSSC
T ss_pred HHHhCCCEEC----CeEEEEEEcCCCCC
Confidence 9999999998 99999999975443
No 262
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.62 E-value=3e-15 Score=117.72 Aligned_cols=84 Identities=15% Similarity=0.153 Sum_probs=77.7
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhc
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKL 201 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 201 (289)
.+.++|||+|||..+++++|.++|.+||.|..+.|+.+.. |+.+++||||+|.+.++|.+|++.|
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---------------~~~~~g~afV~f~~~~~A~~Ai~~l 101 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKM---------------KKTACGFCFVEYYSRADAENAMRYI 101 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT---------------TCCEEEEEEEEESSHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC---------------CCccceEEEEEECCHHHHHHHHHHh
Confidence 4567999999999999999999999999999999999887 6688999999999999999999999
Q ss_pred CCcccCCccccceeeeeccCCCC
Q 022981 202 DDTEFRNPWARGRITVKRYDRSP 224 (289)
Q Consensus 202 ~~~~~~~~~~g~~i~v~~~~~~~ 224 (289)
++..+. ++.|.|+.+....
T Consensus 102 ~g~~~~----g~~l~V~~a~~~~ 120 (156)
T 1h2v_Z 102 NGTRLD----DRIIRTDWDAGFK 120 (156)
T ss_dssp TTSEET----TEECEEEEESCCC
T ss_pred CCCEEC----CeEEEEEECCCCC
Confidence 999998 9999999997533
No 263
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=4e-15 Score=106.03 Aligned_cols=82 Identities=20% Similarity=0.255 Sum_probs=74.4
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 121 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
.....+|||+|||..+++++|+++|..| .|..+.|+.+ . +|.++|||||+|.+.++|.+|+.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~---------------~g~~~g~afV~f~~~~~a~~A~~- 68 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-A---------------HGNKTGYIFVDFSNEEEVKQALK- 68 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-T---------------TSCEEEEEEEECSSHHHHHHHHH-
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-C---------------CCCCceEEEEEECCHHHHHHHHH-
Confidence 3456799999999999999999999999 9999999998 3 45889999999999999999999
Q ss_pred cCCcccCCccccceeeeeccCCCC
Q 022981 201 LDDTEFRNPWARGRITVKRYDRSP 224 (289)
Q Consensus 201 ~~~~~~~~~~~g~~i~v~~~~~~~ 224 (289)
|++..+. |+.|.|..+...+
T Consensus 69 ~~g~~~~----gr~i~v~~a~~~~ 88 (91)
T 2dgw_A 69 CNREYMG----GRYIEVFREKSGP 88 (91)
T ss_dssp SCSEEET----TEEEEEEEESSCC
T ss_pred hCCceeC----CcEEEEEECCcCC
Confidence 9999998 8999999987553
No 264
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.62 E-value=2e-15 Score=110.47 Aligned_cols=80 Identities=25% Similarity=0.374 Sum_probs=70.2
Q ss_pred CCCCCeEEEcCC--CCCc--------cHHHHHHHHhhcCCeeEEEEccC-----CCCCceEEEEEccHHHHHHHHHHhCC
Q 022981 3 GRFSRTIYVGNL--PSDI--------REYEVEDLFYKYGRILDIELKIP-----PRPPCYCFVEFENARDAEDAIRGRDG 67 (289)
Q Consensus 3 ~~~~~~l~V~nL--p~~~--------t~~~L~~~F~~~G~i~~v~~~~~-----~~~~g~afV~f~~~~~A~~A~~~l~g 67 (289)
+.|++.|.|.|+ |.++ .+++|+++|++||+|.+|.|..+ +.++|||||+|.++++|++|+..|||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 579999999998 3333 34799999999999999999764 25689999999999999999999999
Q ss_pred ceeCCceEEEEEccC
Q 022981 68 YNFDGCRLRVELAHG 82 (289)
Q Consensus 68 ~~~~g~~l~v~~~~~ 82 (289)
..|+|+.|.|.+...
T Consensus 82 ~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 82 RKFANRVVVTKYCDP 96 (105)
T ss_dssp CEETTEECEEEEECH
T ss_pred CEeCCCEEEEEEeCH
Confidence 999999999999753
No 265
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.62 E-value=4.8e-16 Score=119.45 Aligned_cols=83 Identities=16% Similarity=0.184 Sum_probs=71.7
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHH
Q 022981 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIR 199 (289)
Q Consensus 120 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 199 (289)
......+|||+|||+++++++|+++|++|| |..+.|+.++.| +++|||||+|.+.++|++|+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g----------------~srGfaFV~F~~~e~A~~Al- 103 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDG----------------RVTGEADVEFATHEEAVAAM- 103 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSS----------------CSSCCCEEECSHHHHHHHHT-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCC----------------CCceEEEEEeCCHHHHHHHH-
Confidence 345567999999999999999999999999 668999887664 78999999999999999999
Q ss_pred hcCCcccCCccccceeeeeccCCCC
Q 022981 200 KLDDTEFRNPWARGRITVKRYDRSP 224 (289)
Q Consensus 200 ~~~~~~~~~~~~g~~i~v~~~~~~~ 224 (289)
.+++..+. ++.|.|..+....
T Consensus 104 ~~~g~~l~----gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 104 SKDRANMQ----HRYIELFLNSTTG 124 (139)
T ss_dssp TCCSCSSS----SCCCCCEECCCSC
T ss_pred hhCCCEEC----CEEEEEEECCCCC
Confidence 79999988 8999998876543
No 266
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=9.9e-16 Score=115.79 Aligned_cols=83 Identities=19% Similarity=0.158 Sum_probs=72.5
Q ss_pred CCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHH
Q 022981 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAI 198 (289)
Q Consensus 119 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~ 198 (289)
.+....++|||+|||+.+++++|.++|..||.|..+.++.+.. +|.++|||||+|.+.++|.+|+
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~---------------~g~~~G~afV~F~~~~~a~~Al 84 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGP---------------NGKATGEGFVEFRNEADYKAAL 84 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECT---------------TSSEEEEEEEEBSSSHHHHHHH
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECC---------------CCCCCeEEEEEECCHHHHHHHH
Confidence 3445678999999999999999999999999998755554444 5688999999999999999999
Q ss_pred HhcCCcccCCccccceeeeeccC
Q 022981 199 RKLDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 199 ~~~~~~~~~~~~~g~~i~v~~~~ 221 (289)
+ |++..+. |+.|.|..+.
T Consensus 85 ~-~~g~~~~----gr~i~V~~a~ 102 (124)
T 1wel_A 85 C-RHKQYMG----NRFIQVHPIT 102 (124)
T ss_dssp T-SCSBCST----TSCBEEEEEC
T ss_pred H-hCCCeEC----CcEEEEEECC
Confidence 9 9999998 8999998875
No 267
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.61 E-value=2.8e-15 Score=105.94 Aligned_cols=80 Identities=20% Similarity=0.289 Sum_probs=71.9
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 121 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
..+.++|||+|||..+++++|.++|.+||.|..+.++.++. +|.++|||||+|.+.++|.+|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---------------~g~~~g~afV~f~~~~~a~~A~~- 71 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPN---------------TGRSRGFGFILFKDAASVEKVLD- 71 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTT---------------TCCEEEEEEEEESSTHHHHHHHH-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCC---------------CCccccEEEEEECCHHHHHHHHH-
Confidence 34667999999999999999999999999999999999877 67889999999999999999996
Q ss_pred cCCcccCCccccceeeeecc
Q 022981 201 LDDTEFRNPWARGRITVKRY 220 (289)
Q Consensus 201 ~~~~~~~~~~~g~~i~v~~~ 220 (289)
+++..+. |+.|.|+.+
T Consensus 72 ~~~~~~~----g~~i~v~~A 87 (87)
T 3s7r_A 72 QKEHRLD----GRVIDPKKA 87 (87)
T ss_dssp SSCEEET----TEEEEEEEC
T ss_pred hCCCEEC----CEEEEEEeC
Confidence 5777777 899998764
No 268
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.61 E-value=3.2e-15 Score=105.98 Aligned_cols=79 Identities=18% Similarity=0.296 Sum_probs=73.8
Q ss_pred cceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCC
Q 022981 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDD 203 (289)
Q Consensus 124 ~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~ 203 (289)
.++|||+|||..+++++|.++|.+||.|..+.+..+.. ++.++|||||+|.+.++|.+|+ .|++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---------------~~~~~g~afV~f~~~~~a~~a~-~~~g 69 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKF---------------SGHPKGFAYIEFSDKESVRTSL-ALDE 69 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCS---------------SSSCCEEEEEEESSTHHHHHHG-GGTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCC---------------CCCcceEEEEEECCHHHHHHHH-hcCC
Confidence 46899999999999999999999999999999999876 6688999999999999999999 9999
Q ss_pred cccCCccccceeeeeccCC
Q 022981 204 TEFRNPWARGRITVKRYDR 222 (289)
Q Consensus 204 ~~~~~~~~g~~i~v~~~~~ 222 (289)
..+. |+.|.|..++.
T Consensus 70 ~~~~----g~~l~V~~a~~ 84 (89)
T 3ucg_A 70 SLFR----GRQIKVIPKRT 84 (89)
T ss_dssp CEET----TEECEEEETTT
T ss_pred CEEC----CcEEEEEEccC
Confidence 9998 99999998864
No 269
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.61 E-value=1.4e-15 Score=104.38 Aligned_cols=75 Identities=17% Similarity=0.250 Sum_probs=69.4
Q ss_pred eeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcc
Q 022981 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTE 205 (289)
Q Consensus 126 ~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~ 205 (289)
+|||+|||..+++++|.++|.+||.|..+.+..++. +|.++|||||+|.+.++|++|++ +++..
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---------------~~~~~g~afV~f~~~~~a~~a~~-~~~~~ 64 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKT---------------TNRHRGFGFVTFESEDIVEKVCE-IHFHE 64 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSS---------------STTSCBEEEEECSCHHHHHHHHS-SSCCC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCC---------------CCCcCcEEEEEECCHHHHHHHHH-CCCCE
Confidence 589999999999999999999999999999998876 56889999999999999999998 99999
Q ss_pred cCCccccceeeeecc
Q 022981 206 FRNPWARGRITVKRY 220 (289)
Q Consensus 206 ~~~~~~g~~i~v~~~ 220 (289)
+. |+.|.|+.+
T Consensus 65 ~~----g~~l~v~~A 75 (75)
T 2mss_A 65 IN----NKMVECKKA 75 (75)
T ss_dssp SS----SCCCEEECC
T ss_pred EC----CEEEEEEeC
Confidence 98 899998764
No 270
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.61 E-value=4.9e-16 Score=111.72 Aligned_cols=80 Identities=11% Similarity=0.121 Sum_probs=73.0
Q ss_pred CcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcC
Q 022981 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLD 202 (289)
Q Consensus 123 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~ 202 (289)
+.++|||+|||..+++++|+++|.+||.|..+.++.+.. ++.++|||||+|.+.++|.+|++.|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~---------------~g~~~g~afV~f~~~~~a~~Ai~~l~ 78 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNE---------------KGMPTGEAMVAFESRDEATAAVIDLN 78 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECT---------------TSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCC---------------CCCEeeEEEEEECCHHHHHHHHHHhC
Confidence 457999999999999999999999999999888887766 66889999999999999999999999
Q ss_pred CcccCCccccceeeeeccC
Q 022981 203 DTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 203 ~~~~~~~~~g~~i~v~~~~ 221 (289)
+..+. ++.|.|+.+.
T Consensus 79 g~~~~----gr~l~v~~a~ 93 (95)
T 2ek1_A 79 DRPIG----SRKVKLSGPS 93 (95)
T ss_dssp TCEET----TEECEEECCC
T ss_pred CCeEC----CcEEEEEecc
Confidence 99998 9999998764
No 271
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=6.4e-15 Score=106.31 Aligned_cols=81 Identities=19% Similarity=0.221 Sum_probs=70.4
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHH
Q 022981 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIR 199 (289)
Q Consensus 120 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 199 (289)
.....++|||+|||..+++++|+++|.+||.|. +.+..+ .++|||||+|.+.++|.+|++
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~-------------------~~~g~afV~f~~~~~a~~A~~ 74 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ-------------------GPRRRAFLHYPDSAAAQQAVS 74 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE-------------------TTTTEEEEECSSHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC-------------------CCCcEEEEEECCHHHHHHHHH
Confidence 344567999999999999999999999999996 555543 347899999999999999999
Q ss_pred hcCCcccCCccccceeeeeccCCCC
Q 022981 200 KLDDTEFRNPWARGRITVKRYDRSP 224 (289)
Q Consensus 200 ~~~~~~~~~~~~g~~i~v~~~~~~~ 224 (289)
.|++..+. |+.|.|+.+...+
T Consensus 75 ~l~g~~~~----g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 75 CLQGLRLG----TDTLRVALARQQR 95 (97)
T ss_dssp HHTTCCSS----SSCCEEEECCCCC
T ss_pred HhCCCEEC----CcEEEEEEcCCCC
Confidence 99999998 8999999987543
No 272
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.7e-15 Score=110.76 Aligned_cols=83 Identities=27% Similarity=0.346 Sum_probs=76.6
Q ss_pred CcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcC
Q 022981 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLD 202 (289)
Q Consensus 123 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~ 202 (289)
..++|||+|||..+++++|.++|.+||.|..+.+..+.. +|.++|||||+|.+.++|.+|++.|+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~---------------~g~~~g~afV~f~~~~~a~~A~~~l~ 71 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRE---------------TGKPKGYGFCEYQDQETALSAMRNLN 71 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETT---------------TTEEEEEEEEECSCHHHHHHHHHHSS
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCC---------------CCccceEEEEEECCHHHHHHHHHHhC
Confidence 456999999999999999999999999999999998876 66889999999999999999999999
Q ss_pred CcccCCccccceeeeeccCCCC
Q 022981 203 DTEFRNPWARGRITVKRYDRSP 224 (289)
Q Consensus 203 ~~~~~~~~~g~~i~v~~~~~~~ 224 (289)
+..+. |+.|.|+.+....
T Consensus 72 g~~~~----g~~l~v~~a~~~~ 89 (104)
T 1p1t_A 72 GREFS----GRALRVDNAASEK 89 (104)
T ss_dssp SBSCS----SSCBEEEETTCTT
T ss_pred CCeeC----CcEEEEEeCCCcc
Confidence 99998 9999999987544
No 273
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.61 E-value=2.4e-15 Score=118.18 Aligned_cols=80 Identities=16% Similarity=0.140 Sum_probs=74.6
Q ss_pred CcceeeecCCCCCCCHHHHHHHHHhcC--CeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 123 SEYRVIVRGLPSSASWQDLKDHMRKAG--DVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 123 ~~~~l~v~nlp~~~~~~~l~~~f~~~g--~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
...+|||+|||+.+++++|.++|..|| .|..+.|+.+.. ||.++|||||+|.+.++|.+|++.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~---------------tg~skGfaFV~f~~~~~A~~Ai~~ 118 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRA---------------NGQSKGYAEVVVASENSVHKLLEL 118 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTT---------------TCCEEEEEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCC---------------CCccceEEEEEECCHHHHHHHHHH
Confidence 457999999999999999999999999 999999999877 779999999999999999999999
Q ss_pred cCCcccCCccccceeeeeccC
Q 022981 201 LDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 201 ~~~~~~~~~~~g~~i~v~~~~ 221 (289)
|++..+. |+.|.|..+.
T Consensus 119 lng~~~~----Gr~l~V~~a~ 135 (156)
T 3n9u_C 119 LPGKVLN----GEKVDVRPAT 135 (156)
T ss_dssp STTCEET----TEECEEEECC
T ss_pred cCCCEEC----CeEeEEEEcC
Confidence 9999998 9999999885
No 274
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.61 E-value=2.3e-15 Score=118.95 Aligned_cols=76 Identities=30% Similarity=0.576 Sum_probs=69.5
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc---CCCCCceEEEEEccHHHHHHHHHHhCCceeCCce--EEEEE
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR--LRVEL 79 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~--l~v~~ 79 (289)
+.++|||+|||+.+++++|+++|++||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+. |.|.|
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 568899999999999999999999999999999965 4567899999999999999999999999999965 88877
Q ss_pred c
Q 022981 80 A 80 (289)
Q Consensus 80 ~ 80 (289)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 275
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.61 E-value=2.7e-15 Score=129.26 Aligned_cols=76 Identities=21% Similarity=0.381 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeC-CceEEEEEcc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD-GCRLRVELAH 81 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~~~ 81 (289)
.++++|||+|||.++++++|+++|++||.|..|.|..+. +|||||+|.+.++|.+|+..|||..|. |+.|+|.|++
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR--HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC--CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 467899999999999999999999999999999998543 689999999999999999999999999 9999999986
No 276
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.61 E-value=1.6e-15 Score=113.55 Aligned_cols=83 Identities=24% Similarity=0.311 Sum_probs=74.9
Q ss_pred CCCCCCcceeeecCCCCCCCHHHHHHHHHhcCC---eeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHH
Q 022981 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGD---VCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDM 194 (289)
Q Consensus 118 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~---v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a 194 (289)
.++....++|||+|||+.+++++|.++|..||. |..+.|+.+..| +++|||||+|.+.++|
T Consensus 11 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g----------------~~~G~afV~F~~~~~a 74 (118)
T 2db1_A 11 GPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREG----------------RQSGEAFVELESEDDV 74 (118)
T ss_dssp SSCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSS----------------CEEEEEEEEBSSHHHH
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCC----------------CCCeEEEEEECCHHHH
Confidence 344566789999999999999999999999999 899999987764 7899999999999999
Q ss_pred HHHHHhcCCcccCCccccceeeeeccC
Q 022981 195 KYAIRKLDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 195 ~~a~~~~~~~~~~~~~~g~~i~v~~~~ 221 (289)
.+|++ +++..+. ++.|.|..+.
T Consensus 75 ~~Al~-~~g~~~~----gr~i~V~~a~ 96 (118)
T 2db1_A 75 KLALK-KDRESMG----HRYIEVFKSH 96 (118)
T ss_dssp HHHGG-GTTEEET----TEEEEEEEEC
T ss_pred HHHHh-cCCCeEC----CeEEEEEECC
Confidence 99999 9999998 8999998875
No 277
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.61 E-value=3.2e-15 Score=109.89 Aligned_cols=83 Identities=16% Similarity=0.176 Sum_probs=75.2
Q ss_pred CCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHH
Q 022981 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAI 198 (289)
Q Consensus 119 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~ 198 (289)
++..+.++|||+|||..+++++|.++|.+||.|..+.|..+..| .++|||||+|.+.++|.+|+
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g----------------~~~g~afV~f~~~~~a~~A~ 87 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSG----------------RSLGTADVHFERKADALKAM 87 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTS----------------CEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC----------------CcceEEEEEECCHHHHHHHH
Confidence 34456789999999999999999999999999999999987654 67899999999999999999
Q ss_pred HhcCCcccCCccccceeeeeccC
Q 022981 199 RKLDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 199 ~~~~~~~~~~~~~g~~i~v~~~~ 221 (289)
+.|++..+. |+.|.|+.+.
T Consensus 88 ~~l~g~~~~----g~~l~V~~a~ 106 (107)
T 3ulh_A 88 KQYNGVPLD----GRPMNIQLVT 106 (107)
T ss_dssp HHHTTCEET----TEECEEEEEC
T ss_pred HHhCCCEeC----CcEEEEEEeC
Confidence 999999998 8999998764
No 278
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.6e-15 Score=108.09 Aligned_cols=81 Identities=15% Similarity=0.167 Sum_probs=71.1
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 121 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
.....+|||+|||+.+++++|+++|..||.+ .+.|+.++. |+++|||||+|.+.++|++|++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~----------------g~~~G~afV~F~~~~~a~~Al~- 73 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPD----------------GRVTGEADVEFATHEDAVAAMA- 73 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSS----------------SCEEEEEEEECSSSHHHHHHHT-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCC----------------CCEeeEEEEEECCHHHHHHHHH-
Confidence 3456799999999999999999999999955 899988765 3789999999999999999995
Q ss_pred cCCcccCCccccceeeeeccCCC
Q 022981 201 LDDTEFRNPWARGRITVKRYDRS 223 (289)
Q Consensus 201 ~~~~~~~~~~~g~~i~v~~~~~~ 223 (289)
+++..+. ++.|.|..+...
T Consensus 74 ~~~~~~~----gr~i~V~~~~~~ 92 (102)
T 1wez_A 74 KDKANMQ----HRYVELFLNSTA 92 (102)
T ss_dssp TSSCCSS----SSCCEEEEECCC
T ss_pred hCCCeEC----CcEEEEEECCCC
Confidence 7999988 899999887643
No 279
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=7.5e-16 Score=108.40 Aligned_cols=79 Identities=19% Similarity=0.257 Sum_probs=72.4
Q ss_pred CcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcC
Q 022981 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLD 202 (289)
Q Consensus 123 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~ 202 (289)
+.++|||+|||..+++++|.++|.+||.|..+.|..++. ++.++|||||+|.+.++|.+|++.|+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~---------------~~~~~g~afV~f~~~~~a~~A~~~l~ 68 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKT---------------TNKCKGYGFVDFDSPSAAQKAVTALK 68 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSS---------------SCSCCSEEEEEESCHHHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC---------------CCCcCcEEEEEECCHHHHHHHHHHhc
Confidence 456999999999999999999999999999999999876 66889999999999999999999999
Q ss_pred CcccCCccccceeeeecc
Q 022981 203 DTEFRNPWARGRITVKRY 220 (289)
Q Consensus 203 ~~~~~~~~~g~~i~v~~~ 220 (289)
+..+. |+.|++...
T Consensus 69 g~~~~----g~~~~~~~~ 82 (85)
T 1x4e_A 69 ASGVQ----AQMAKQSGP 82 (85)
T ss_dssp HHTCC----EESCCSSCC
T ss_pred CCeEe----eEEEeecCC
Confidence 99988 888877654
No 280
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=6.8e-15 Score=109.77 Aligned_cols=84 Identities=15% Similarity=0.208 Sum_probs=76.1
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhc
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKL 201 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 201 (289)
...++|||+|||..+++++|+++|.+||.|..+.|..+.. ++.++|||||+|.+.++|.+|++.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~---------------~g~~~g~afV~f~~~~~a~~Ai~~- 88 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPA---------------SKRSRGFGFVTFSSMAEVDAAMAA- 88 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTT---------------TSSCCSEEEEECSSHHHHHHHHTS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCC---------------CCCcCceEEEEeCCHHHHHHHHHh-
Confidence 3456999999999999999999999999999999999877 678899999999999999999997
Q ss_pred CCcccCCccccceeeeeccCCCCC
Q 022981 202 DDTEFRNPWARGRITVKRYDRSPS 225 (289)
Q Consensus 202 ~~~~~~~~~~g~~i~v~~~~~~~~ 225 (289)
++..+. |+.|.|+.+.....
T Consensus 89 ~~~~~~----g~~l~V~~a~~~~~ 108 (116)
T 1x4b_A 89 RPHSID----GRVVEPKRAVAREE 108 (116)
T ss_dssp CSEEET----TEEEEEECCSSCCC
T ss_pred CCcEEC----CEEEEEEECCCCcc
Confidence 999888 99999999875443
No 281
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=2.1e-15 Score=103.92 Aligned_cols=76 Identities=18% Similarity=0.263 Sum_probs=70.2
Q ss_pred ceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCc
Q 022981 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDT 204 (289)
Q Consensus 125 ~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 204 (289)
++|||+|||..+++++|.++|++||.|..+.+..++. +|.++|||||+|.+.++|.+|++.++ .
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~---------------~~~~~g~afV~f~~~~~a~~a~~~~~-~ 64 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPL---------------TKRSRGFGFVTFMDQAGVDKVLAQSR-H 64 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCC---------------SSSCSSEEEECCCCTTHHHHHHHTTT-C
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCC---------------CCCcCceEEEEEcCHHHHHHHHHhCC-C
Confidence 3799999999999999999999999999999999876 66889999999999999999999999 8
Q ss_pred ccCCccccceeeeecc
Q 022981 205 EFRNPWARGRITVKRY 220 (289)
Q Consensus 205 ~~~~~~~g~~i~v~~~ 220 (289)
.+. |+.|.|+.+
T Consensus 65 ~~~----g~~l~v~~a 76 (77)
T 1uaw_A 65 ELD----SKTIDPKVA 76 (77)
T ss_dssp CCS----SCCCEEEEC
T ss_pred ccC----CEEEEEEec
Confidence 887 899998765
No 282
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.59 E-value=2.7e-15 Score=122.45 Aligned_cols=78 Identities=17% Similarity=0.273 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcC-CeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeC-CceEEEEEcc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD-GCRLRVELAH 81 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G-~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~~~ 81 (289)
.++++|||+|||..+++++|+++|++|| .|..|.+..+. +|||||+|.+.++|.+|+..|||..|. |+.|.|.|++
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD--RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT--SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 4589999999999999999999999999 99999996543 799999999999999999999999999 9999999987
Q ss_pred CC
Q 022981 82 GG 83 (289)
Q Consensus 82 ~~ 83 (289)
+.
T Consensus 196 ~~ 197 (198)
T 1qm9_A 196 ST 197 (198)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 283
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.4e-14 Score=107.65 Aligned_cols=87 Identities=20% Similarity=0.262 Sum_probs=76.4
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHH
Q 022981 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIR 199 (289)
Q Consensus 120 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 199 (289)
.....++|||+|||..+++++|.++|..||.|..+.|..+..+ .++|||||+|.+.++|.+|++
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g----------------~~~g~afV~f~~~~~a~~A~~ 84 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSG----------------TSRGVGFARMESTEKCEAVIG 84 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSS----------------CEEEEEEEEESCHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCC----------------CcceEEEEEECCHHHHHHHHH
Confidence 3455679999999999999999999999999999999987643 778999999999999999999
Q ss_pred hcCCcccCCcc----ccceeeeeccCC
Q 022981 200 KLDDTEFRNPW----ARGRITVKRYDR 222 (289)
Q Consensus 200 ~~~~~~~~~~~----~g~~i~v~~~~~ 222 (289)
.|++..+.+.. .+++|.|..++.
T Consensus 85 ~l~g~~~~~~~~~~~~~~~l~v~~a~p 111 (114)
T 1x5o_A 85 HFNGKFIKTPPGVSAPTEPLLCKFSGP 111 (114)
T ss_dssp HHBTCCCCCCTTSCCCSSCBEEEECCC
T ss_pred HhCCCEEcCCccccCCCCceeEEccCC
Confidence 99999996433 478899988863
No 284
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=3.7e-15 Score=109.76 Aligned_cols=81 Identities=22% Similarity=0.275 Sum_probs=72.2
Q ss_pred CCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHH
Q 022981 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAI 198 (289)
Q Consensus 119 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~ 198 (289)
+......+|||+|||+.+++++|+++|+.| .|..+.|+.+..| +++|||||+|.+.++|.+|+
T Consensus 11 ~~~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g----------------~~~G~afV~F~~~~~a~~Al 73 (109)
T 2dnn_A 11 PINPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVG----------------RNNGNGLVKFLSPQDTFEAL 73 (109)
T ss_dssp CCCHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTC----------------CCCSEEEEECSSHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCC----------------CCCeEEEEEECCHHHHHHHH
Confidence 344456799999999999999999999999 8999999987664 78999999999999999999
Q ss_pred HhcCCcccCCccccceeeeeccC
Q 022981 199 RKLDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 199 ~~~~~~~~~~~~~g~~i~v~~~~ 221 (289)
.+++..+. ++.|.|..+.
T Consensus 74 -~~~~~~~~----gr~i~V~~a~ 91 (109)
T 2dnn_A 74 -KRNRMLMI----QRYVEVSPAT 91 (109)
T ss_dssp -HTTTEEET----TEEEEEEECC
T ss_pred -hcCCCeEC----CeEEEEEECC
Confidence 69999998 8999998775
No 285
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.59 E-value=5.5e-15 Score=123.58 Aligned_cols=78 Identities=17% Similarity=0.273 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcC-CeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeC-CceEEEEEcc
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD-GCRLRVELAH 81 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G-~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~~~ 81 (289)
.++++|||+|||+++++++|+++|++|| .|..|.+..+ .+|||||+|.+.++|.+|+..|||..|. |+.|.|.|++
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK--DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS--STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC--CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 4579999999999999999999999999 9999999653 3799999999999999999999999999 9999999997
Q ss_pred CC
Q 022981 82 GG 83 (289)
Q Consensus 82 ~~ 83 (289)
+.
T Consensus 227 ~~ 228 (229)
T 2adc_A 227 ST 228 (229)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 286
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.59 E-value=5.1e-15 Score=111.75 Aligned_cols=81 Identities=20% Similarity=0.286 Sum_probs=74.6
Q ss_pred CcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcC
Q 022981 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLD 202 (289)
Q Consensus 123 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~ 202 (289)
...+|||+|||..+++++|.++|.+||.|..+.|..+.. +|.++|||||+|.+.++|.+|+ .|+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---------------~~~~~g~afV~f~~~~~a~~A~-~l~ 98 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKF---------------SGHPKGYAYIEFAERNSVDAAV-AMD 98 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECT---------------TSSCEEEEEEEESSHHHHHHHH-TTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC---------------CCCcccEEEEEECCHHHHHHHH-hcC
Confidence 356999999999999999999999999999999999876 6688999999999999999999 799
Q ss_pred CcccCCccccceeeeeccCCC
Q 022981 203 DTEFRNPWARGRITVKRYDRS 223 (289)
Q Consensus 203 ~~~~~~~~~g~~i~v~~~~~~ 223 (289)
+..+. |+.|.|+.++..
T Consensus 99 g~~~~----g~~l~V~~a~~~ 115 (124)
T 2jwn_A 99 ETVFR----GRTIKVLPKRTN 115 (124)
T ss_dssp TCEET----TEECEEEESSCC
T ss_pred CCeEC----CeEEEEEECCCC
Confidence 99998 999999998743
No 287
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=4.7e-15 Score=110.30 Aligned_cols=80 Identities=19% Similarity=0.194 Sum_probs=74.2
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhc
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKL 201 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 201 (289)
...++|||+|||..+++++|.++|.+||.|..+.|..+.. ++.++|||||+|.+.++|.+|+ .|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---------------~g~~~g~afV~f~~~~~a~~A~-~l 86 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRN---------------SRRSKGIAYVEFCEIQSVPLAI-GL 86 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCC---------------SSSCCCCEEEEESCGGGHHHHH-HH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCC---------------CCccCcEEEEEeCcHHHHHHHH-Hc
Confidence 3456999999999999999999999999999999998877 6788999999999999999999 99
Q ss_pred CCcccCCccccceeeeeccC
Q 022981 202 DDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 202 ~~~~~~~~~~g~~i~v~~~~ 221 (289)
++..+. |+.|.|+.+.
T Consensus 87 ~g~~~~----g~~l~V~~a~ 102 (114)
T 2cq4_A 87 TGQRLL----GVPIIVQASQ 102 (114)
T ss_dssp TTEEET----TEEEEEEEHH
T ss_pred CCCEeC----CeEEEEEecC
Confidence 999998 8999999875
No 288
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=6.9e-15 Score=107.31 Aligned_cols=78 Identities=15% Similarity=0.231 Sum_probs=71.1
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhc
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKL 201 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 201 (289)
....+|||+|||..+++++|.++|++||+|..+.|+.+..| .++|||||+|.+.++|.+|+. +
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g----------------~~rG~aFV~F~~~e~a~~Ai~-~ 71 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHK----------------AFKGSIFVVFDSIESAKKFVE-T 71 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTT----------------SCCCEEEEEESSHHHHHHHHT-S
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCC----------------CCccEEEEEECCHHHHHHHHH-c
Confidence 45579999999999999999999999999999999987664 779999999999999999999 8
Q ss_pred CCcccCCccccceeeeecc
Q 022981 202 DDTEFRNPWARGRITVKRY 220 (289)
Q Consensus 202 ~~~~~~~~~~g~~i~v~~~ 220 (289)
++..+. |+.|.|..+
T Consensus 72 ~~~~~~----gr~l~V~~~ 86 (103)
T 1s79_A 72 PGQKYK----ETDLLILFK 86 (103)
T ss_dssp SCCCCT----TTTCEEEEH
T ss_pred CCCEEC----CEEEEEEEc
Confidence 999988 899998854
No 289
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=8.4e-15 Score=106.46 Aligned_cols=81 Identities=19% Similarity=0.236 Sum_probs=70.9
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 121 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
..+.++|||+|||..+++++|+++|.+||.| .++.+. ++.++|||||+|.+.++|.+|++.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~----------------~g~~~g~afV~f~~~~~A~~A~~~ 72 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQ----------------NGKSKGYAFIEFASFEDAKEALNS 72 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCS----------------SSCBCSEEEEECSSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECC----------------CCCEeeEEEEEECCHHHHHHHHHH
Confidence 3456799999999999999999999999987 455542 457899999999999999999999
Q ss_pred cCCcccCCccccceeeeeccCCCC
Q 022981 201 LDDTEFRNPWARGRITVKRYDRSP 224 (289)
Q Consensus 201 ~~~~~~~~~~~g~~i~v~~~~~~~ 224 (289)
|++..+. ++.|.|+.+...+
T Consensus 73 l~g~~~~----g~~l~v~~a~~~~ 92 (101)
T 2fc9_A 73 CNKREIE----GRAIRLELQGPRG 92 (101)
T ss_dssp TSSEEET----TEEEEEEECSSCC
T ss_pred hCCCEeC----CeEEEEEEcCCCC
Confidence 9999998 9999999987643
No 290
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.58 E-value=3.5e-15 Score=103.87 Aligned_cols=73 Identities=12% Similarity=0.127 Sum_probs=67.6
Q ss_pred cceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCC
Q 022981 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDD 203 (289)
Q Consensus 124 ~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~ 203 (289)
..-|+|+||++.+++++|+++|.+||+|.++.+.. ++|||||+|.+.++|.+|++.||+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~---------------------~kGfaFVey~~~~eA~~Ai~~Ln~ 65 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL---------------------NQGIALCKYTTREEANKAQMALNN 65 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET---------------------TTTEEEEEESSHHHHHHHHHHHTT
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC---------------------CCcEEEEEECCHHHHHHHHHHhcC
Confidence 34899999999999999999999999999999865 268999999999999999999999
Q ss_pred cccCCccccceeeeeccC
Q 022981 204 TEFRNPWARGRITVKRYD 221 (289)
Q Consensus 204 ~~~~~~~~g~~i~v~~~~ 221 (289)
..+. |+.|+|+.+.
T Consensus 66 ~~l~----gr~I~V~~A~ 79 (89)
T 2wbr_A 66 CVLA----NTTIFAESPS 79 (89)
T ss_dssp EEET----TEEEEEECCC
T ss_pred CEEC----CcEEEEEECC
Confidence 9999 9999999873
No 291
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=3.7e-15 Score=110.38 Aligned_cols=88 Identities=14% Similarity=0.067 Sum_probs=76.2
Q ss_pred CCCcceeeecCCCCCCCHHHHH---HHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHH
Q 022981 121 RHSEYRVIVRGLPSSASWQDLK---DHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYA 197 (289)
Q Consensus 121 ~~~~~~l~v~nlp~~~~~~~l~---~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 197 (289)
....++|||+|||+.+++++|. ++|.+||.|..+.|..+.... .++.++|||||+|.+.++|.+|
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~------------~~~~~~G~afV~f~~~~~A~~A 79 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYA------------GSQGPSASAYVTYIRSEDALRA 79 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCC------------SSSCCCEEEEEEESSHHHHHHH
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcC------------ccCCCCeEEEEEECcHHHHHHH
Confidence 3456799999999999999999 999999999999998876511 1235669999999999999999
Q ss_pred HHhcCCcccCCccccceeeeeccCCCC
Q 022981 198 IRKLDDTEFRNPWARGRITVKRYDRSP 224 (289)
Q Consensus 198 ~~~~~~~~~~~~~~g~~i~v~~~~~~~ 224 (289)
++.|++..+. |+.|.|+.+...+
T Consensus 80 i~~lng~~~~----gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 80 IQCVNNVVVD----GRTLKASLGTTKY 102 (111)
T ss_dssp HHHHTTEEET----TEEEEEESCCCCS
T ss_pred HHHhCCCEEC----CEEEEEEeccccc
Confidence 9999999998 9999999997654
No 292
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.58 E-value=2.9e-15 Score=104.44 Aligned_cols=72 Identities=15% Similarity=0.218 Sum_probs=65.2
Q ss_pred ceeeecCCCCCC------CHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHH
Q 022981 125 YRVIVRGLPSSA------SWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAI 198 (289)
Q Consensus 125 ~~l~v~nlp~~~------~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~ 198 (289)
++|||+|||..+ ++++|.++|++||.|..+.+.. . +|.++|||||+|.+.++|.+|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~---------------~g~~~g~afV~f~~~~~A~~Ai 64 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--E---------------DGKTKGYIFLEYASPAHAVDAV 64 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--B---------------TTBCCCEEEEEESSHHHHHHHH
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--C---------------CCcEeEEEEEEECCHHHHHHHH
Confidence 589999999999 6799999999999999999873 2 5688999999999999999999
Q ss_pred HhcCCcccCCccccc-eeee
Q 022981 199 RKLDDTEFRNPWARG-RITV 217 (289)
Q Consensus 199 ~~~~~~~~~~~~~g~-~i~v 217 (289)
+.|+|..+. |+ .|+|
T Consensus 65 ~~lng~~~~----g~~~l~V 80 (81)
T 2krb_A 65 KNADGYKLD----KQHTFRV 80 (81)
T ss_dssp TTSSSCCCS----SSSCCCC
T ss_pred HHhcCcccC----CceeEEe
Confidence 999999998 77 7766
No 293
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=9.9e-15 Score=110.44 Aligned_cols=81 Identities=9% Similarity=0.130 Sum_probs=71.1
Q ss_pred CCCcceeeecCCCCCCCHHHHH----HHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHH
Q 022981 121 RHSEYRVIVRGLPSSASWQDLK----DHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKY 196 (289)
Q Consensus 121 ~~~~~~l~v~nlp~~~~~~~l~----~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~ 196 (289)
..+.++|||+|||+.+++++|+ ++|++||.|..+.+.. ++.++|||||+|.+.++|..
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~------------------~~~~rG~aFV~F~~~~~A~~ 87 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL------------------SDDNSGKAYIVFATQESAQA 87 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC------------------CCSSCCCEEEEESSHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc------------------CCCcCCEEEEEECCHHHHHH
Confidence 3456799999999999999876 6999999999888754 34678999999999999999
Q ss_pred HHHhcCCcccCCccccceeeeeccCCC
Q 022981 197 AIRKLDDTEFRNPWARGRITVKRYDRS 223 (289)
Q Consensus 197 a~~~~~~~~~~~~~~g~~i~v~~~~~~ 223 (289)
|+..|+|..+. |++|.|..+...
T Consensus 88 Ai~~lng~~l~----gr~l~V~~a~~~ 110 (127)
T 2a3j_A 88 FVEAFQGYPFQ----GNPLVITFSETP 110 (127)
T ss_dssp HHHHSTTCCCT----TSCCEEEECCCC
T ss_pred HHHHHCCCEeC----CCEEEEEEccCc
Confidence 99999999998 899999998753
No 294
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.58 E-value=3.4e-15 Score=122.68 Aligned_cols=77 Identities=13% Similarity=0.168 Sum_probs=68.6
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCe--eEEEEccC-CCCCceEEEEEccHHHHHHHHHHhCCceeCCc----eEE
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRI--LDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGC----RLR 76 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i--~~v~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----~l~ 76 (289)
.|+++|||+|||+++|+++|+++|++||.| ..+++..+ +..+|||||+|.+.++|.+||..|||..|.|. ++.
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~ 200 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYT 200 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceE
Confidence 467899999999999999999999999999 89998765 35569999999999999999999999999886 677
Q ss_pred EEEc
Q 022981 77 VELA 80 (289)
Q Consensus 77 v~~~ 80 (289)
|.++
T Consensus 201 vk~~ 204 (205)
T 3tyt_A 201 LKLC 204 (205)
T ss_dssp CEEE
T ss_pred EEec
Confidence 7765
No 295
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.58 E-value=2e-14 Score=104.88 Aligned_cols=77 Identities=10% Similarity=0.196 Sum_probs=69.8
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhc
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKL 201 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 201 (289)
.+.++|||+|||..+++++|.++|.+||.|..+.+.+ +||||+|.+.++|.+|++.|
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~-----------------------~~afV~f~~~~~a~~A~~~l 65 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK-----------------------DYAFIHFDERDGAVKAMEEM 65 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS-----------------------SCEEEEESSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-----------------------CEEEEEeCCHHHHHHHHHHH
Confidence 3567999999999999999999999999999988764 58999999999999999999
Q ss_pred CCcccCCccccceeeeeccCCCCC
Q 022981 202 DDTEFRNPWARGRITVKRYDRSPS 225 (289)
Q Consensus 202 ~~~~~~~~~~g~~i~v~~~~~~~~ 225 (289)
++..+. ++.|.|+.+.....
T Consensus 66 ~g~~~~----g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 66 NGKDLE----GENIEIVFAKPPDQ 85 (103)
T ss_dssp TTEEET----TEEEEEEECCCCCC
T ss_pred CCCccC----CCEEEEEEcCCCcc
Confidence 999998 99999999975443
No 296
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.58 E-value=6.4e-15 Score=108.70 Aligned_cols=84 Identities=18% Similarity=0.214 Sum_probs=73.1
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 121 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
....++|||+|||..+++++|.++|..||.|..+.|..+.. ||.++|||||+|.+.++|.+|++.
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~---------------tg~~kg~afV~f~~~~~A~~Ai~~ 86 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPL---------------TKRSRGFGFVTFMDQAGVDKVLAQ 86 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTT---------------TCCCTTCEEEEESSHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCC---------------CCCcCcEEEEEECCHHHHHHHHHH
Confidence 34567999999999999999999999999999999999876 678899999999999999999997
Q ss_pred cCCcccCCccccceeeeeccCCCC
Q 022981 201 LDDTEFRNPWARGRITVKRYDRSP 224 (289)
Q Consensus 201 ~~~~~~~~~~~g~~i~v~~~~~~~ 224 (289)
++ ..+. |+.|.|+.+...+
T Consensus 87 ~~-~~l~----g~~l~V~~a~~~~ 105 (109)
T 2rs2_A 87 SR-HELD----SKTIDPKVAFPRR 105 (109)
T ss_dssp SC-EEET----TEEEEEEECCCCC
T ss_pred CC-CcCC----CEEEEEEEccCCC
Confidence 74 7777 9999999987544
No 297
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.58 E-value=7.3e-15 Score=107.64 Aligned_cols=80 Identities=14% Similarity=0.209 Sum_probs=72.0
Q ss_pred CCcceeeecCCCCCC------CHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHH
Q 022981 122 HSEYRVIVRGLPSSA------SWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMK 195 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~------~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~ 195 (289)
...++|||+|||..+ ++++|.++|++||.|..+.|+. . +|.++|||||+|.+.++|.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~---------------~g~~~G~afV~f~~~~~A~ 75 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--E---------------DGKTKGYIFLEYASPAHAV 75 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--B---------------TTBSCCEEEEEECSSSHHH
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--C---------------CCCeeeEEEEEECCHHHHH
Confidence 345799999999999 7899999999999999999883 3 5688999999999999999
Q ss_pred HHHHhcCCcccCCccccc-eeeeeccCC
Q 022981 196 YAIRKLDDTEFRNPWARG-RITVKRYDR 222 (289)
Q Consensus 196 ~a~~~~~~~~~~~~~~g~-~i~v~~~~~ 222 (289)
+|+..|+|..+. |+ .|.|..+..
T Consensus 76 ~Ai~~l~g~~~~----g~~~l~V~~a~~ 99 (105)
T 2nlw_A 76 DAVKNADGYKLD----KQHTFRVNLFTD 99 (105)
T ss_dssp HHHHHCSSEECS----TTCEEEEECSCC
T ss_pred HHHHHhCCcccC----CCceEEEEEcch
Confidence 999999999998 88 999998864
No 298
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.4e-14 Score=106.72 Aligned_cols=83 Identities=17% Similarity=0.266 Sum_probs=73.8
Q ss_pred CcceeeecCCCCCCCHHHHHHHHHhcCC-eeEEEEe-eCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 123 SEYRVIVRGLPSSASWQDLKDHMRKAGD-VCFAEVS-RDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 123 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~-v~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
+.++|||+|||..+++++|.++|.+||. |..+.+. .+.. +|.++|||||+|.+.++|..|++.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~---------------~g~~~g~afV~f~~~~~A~~A~~~ 71 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAAD---------------KMKNRGFAFVEYESHRAAAMARRK 71 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCT---------------TTTTCCEEEEEESSHHHHHHHHTT
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCC---------------CCCcCcEEEEEecCHHHHHHHHHH
Confidence 5679999999999999999999999998 9999988 5554 678899999999999999999999
Q ss_pred cC--CcccCCccccceeeeeccCCCC
Q 022981 201 LD--DTEFRNPWARGRITVKRYDRSP 224 (289)
Q Consensus 201 ~~--~~~~~~~~~g~~i~v~~~~~~~ 224 (289)
|+ +..+. |+.|.|+.+....
T Consensus 72 l~~g~~~~~----g~~l~V~~a~~~~ 93 (109)
T 2dis_A 72 LMPGRIQLW----GHQIAVDWAEPEI 93 (109)
T ss_dssp TTTCCSCBT----TBCCEEEESCSSC
T ss_pred hhCCCceec----CCeEEEEEcCCCC
Confidence 96 57877 8999999987543
No 299
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=6.9e-15 Score=108.54 Aligned_cols=81 Identities=22% Similarity=0.272 Sum_probs=74.2
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 121 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
....++|||+|||..+++++|.++|++||.|..+.+..+.. .++|||||+|.+.++|.+|++.
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-----------------~~kg~afV~f~~~~~A~~Ai~~ 88 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-----------------GSKGFGFVTFENSADADRAREK 88 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-----------------BCTTEEEEECCCSHHHHHHHHH
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-----------------CCceEEEEEECCHHHHHHHHHH
Confidence 45667999999999999999999999999999999988754 4689999999999999999999
Q ss_pred cCCcccCCccccceeeeeccCC
Q 022981 201 LDDTEFRNPWARGRITVKRYDR 222 (289)
Q Consensus 201 ~~~~~~~~~~~g~~i~v~~~~~ 222 (289)
|++..+. |+.|.|+.+..
T Consensus 89 l~g~~~~----g~~l~V~~a~~ 106 (109)
T 2err_A 89 LHGTVVE----GRKIEVNNATA 106 (109)
T ss_dssp HTTCEET----TEECEEEECCC
T ss_pred cCCCEEC----CEEEEEEECCC
Confidence 9999998 99999998864
No 300
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.5e-14 Score=105.29 Aligned_cols=85 Identities=22% Similarity=0.326 Sum_probs=73.3
Q ss_pred CCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHH
Q 022981 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAI 198 (289)
Q Consensus 119 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~ 198 (289)
....+.++|||+|||..+++++|+++|..|+ .+.++.+.. ++.++|||||+|.+.++|.+|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~---------------~~~~~g~afV~f~~~~~A~~A~ 71 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRE---------------TGSSKGFGFVDFNSEEDAKAAK 71 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSS---------------SCSEEEEEEEECSSHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCC---------------CCCcCcEEEEEECCHHHHHHHH
Confidence 3345678999999999999999999999773 567777665 5688999999999999999999
Q ss_pred HhcCCcccCCccccceeeeeccCCCCC
Q 022981 199 RKLDDTEFRNPWARGRITVKRYDRSPS 225 (289)
Q Consensus 199 ~~~~~~~~~~~~~g~~i~v~~~~~~~~ 225 (289)
+.|++..+. ++.|.|+.+.....
T Consensus 72 ~~l~g~~~~----g~~l~V~~a~~~~~ 94 (102)
T 2fc8_A 72 EAMEDGEID----GNKVTLDWAKPKGE 94 (102)
T ss_dssp HHHTTCEET----TEECEEEECCCCCS
T ss_pred HHhCCCeEC----CeEEEEEEecCCCC
Confidence 999999998 89999999976444
No 301
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.58 E-value=5.8e-14 Score=105.97 Aligned_cols=83 Identities=16% Similarity=0.177 Sum_probs=75.8
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHH
Q 022981 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIR 199 (289)
Q Consensus 120 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 199 (289)
...+.++|||+|||..+++++|.++|.+||.|..+.|..+..| .++|||||+|.+.++|.+|++
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g----------------~~~g~afV~f~~~~~A~~Ai~ 94 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSG----------------RSLGTADVHFERRADALKAMK 94 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSS----------------SCCSEEEEEESSHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCC----------------CEeeEEEEEECCHHHHHHHHH
Confidence 4466789999999999999999999999999999999987643 678999999999999999999
Q ss_pred hcCCcccCCccccceeeeeccCC
Q 022981 200 KLDDTEFRNPWARGRITVKRYDR 222 (289)
Q Consensus 200 ~~~~~~~~~~~~g~~i~v~~~~~ 222 (289)
.|++..+. |+.|.|+.+..
T Consensus 95 ~l~g~~~~----g~~l~V~~a~~ 113 (124)
T 2kt5_A 95 QYKGVPLD----GRPMDIQLVAS 113 (124)
T ss_dssp HHTTEESS----SCEEEEEEECC
T ss_pred HcCCCEEC----CcEEEEEEeCC
Confidence 99999998 89999998864
No 302
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.2e-14 Score=105.62 Aligned_cols=78 Identities=10% Similarity=0.086 Sum_probs=69.1
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhc
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKL 201 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 201 (289)
.+.++|||+|||+.+++++|+++|++||.|..+.|+.+ +|||||+|++.++|..|++.|
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~---------------------kGfaFVeF~~~~~A~~Ai~~l 72 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---------------------KNQAFIEMNTEEAANTMVNYY 72 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT---------------------TTEEEEEESSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---------------------CCEEEEEECCHHHHHHHHHHh
Confidence 45679999999999999999999999999999999874 479999999999999999988
Q ss_pred CC--cccCCccccceeeeeccCCCC
Q 022981 202 DD--TEFRNPWARGRITVKRYDRSP 224 (289)
Q Consensus 202 ~~--~~~~~~~~g~~i~v~~~~~~~ 224 (289)
++ ..+. |++|.|..+...+
T Consensus 73 ~~~~~~l~----Gr~l~V~~A~~~~ 93 (105)
T 1sjq_A 73 TSVTPVLR----GQPIYIQFSNHKE 93 (105)
T ss_dssp TTSCCEET----TEECCBCCCSSSS
T ss_pred ccCCceEC----CEEEEEEEcCCCC
Confidence 64 6677 9999999987533
No 303
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=2e-14 Score=102.23 Aligned_cols=78 Identities=19% Similarity=0.336 Sum_probs=70.7
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhc
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKL 201 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 201 (289)
.+.++|||+|||..+++++|.++|.+||.|..+.+.+ +||||+|.+.++|.+|++.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~-----------------------g~afV~f~~~~~A~~A~~~l 62 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIK-----------------------NYGFVHIEDKTAAEDAIRNL 62 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEET-----------------------TEEEEEESSHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC-----------------------CEEEEEECCHHHHHHHHHHh
Confidence 4567999999999999999999999999999999873 69999999999999999999
Q ss_pred CCcccCCccccceeeeeccCCCCCC
Q 022981 202 DDTEFRNPWARGRITVKRYDRSPSR 226 (289)
Q Consensus 202 ~~~~~~~~~~g~~i~v~~~~~~~~r 226 (289)
++..+. ++.|.|+.+...+..
T Consensus 63 ~g~~~~----g~~l~v~~a~~~~~~ 83 (90)
T 2dnq_A 63 HHYKLH----GVNINVEASKNKSKA 83 (90)
T ss_dssp TTCBCS----SCBCEEECSSCCCCC
T ss_pred cCCccC----CcEEEEEECCCCCCC
Confidence 999988 999999999765443
No 304
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.57 E-value=2.6e-15 Score=106.81 Aligned_cols=79 Identities=25% Similarity=0.323 Sum_probs=72.0
Q ss_pred ceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCc
Q 022981 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDT 204 (289)
Q Consensus 125 ~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 204 (289)
++|||+|||..+++++|.++|++||.|..+.+..+.. +|.++|||||+|.+.+ |.+|+..|++.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---------------~~~~~g~afV~f~~~~-a~~a~~~l~g~ 65 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRE---------------TKKPKGFGFVEMQEES-VSEAIAKLDNT 65 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSS---------------SCCCCEEEEEEECTTH-HHHHHHTSCSS
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCC---------------CCCcceEEEEEECCHH-HHHHHHHhCCC
Confidence 4799999999999999999999999999999998877 6688999999999999 99999999999
Q ss_pred ccCCccccceeeeeccCCC
Q 022981 205 EFRNPWARGRITVKRYDRS 223 (289)
Q Consensus 205 ~~~~~~~g~~i~v~~~~~~ 223 (289)
.+. |+.|.|+.+...
T Consensus 66 ~~~----g~~l~V~~a~~~ 80 (90)
T 2ki2_A 66 DFM----GRTIRVTEANPK 80 (90)
T ss_dssp CCS----SSSCSEEEC---
T ss_pred EEC----CeEEEEEEcCCC
Confidence 998 999999998743
No 305
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=1.6e-14 Score=105.00 Aligned_cols=76 Identities=22% Similarity=0.346 Sum_probs=70.2
Q ss_pred ceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCc
Q 022981 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDT 204 (289)
Q Consensus 125 ~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 204 (289)
++|||+|||..+++++|.++|++||.|..+.+..+ . +|||||+|.+.++|.+|++.|++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~-------------------~g~afV~f~~~~~a~~A~~~l~g~ 60 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-P-------------------PGFAFVEFEDPRDAEDAVRGLDGK 60 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-S-------------------SSEEEEECSSHHHHHHHHHHHHHS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-C-------------------CCEEEEEECCHHHHHHHHHHHCCC
Confidence 47999999999999999999999999999999886 2 589999999999999999999999
Q ss_pred ccCCccccceeeeeccCCCC
Q 022981 205 EFRNPWARGRITVKRYDRSP 224 (289)
Q Consensus 205 ~~~~~~~g~~i~v~~~~~~~ 224 (289)
.+. |+.|.|+.+...+
T Consensus 61 ~~~----g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 61 VIC----GSRVRVELSTGMP 76 (101)
T ss_dssp CSS----SCCCEEEESSSCC
T ss_pred eEC----CcEEEEEEccCCC
Confidence 988 8999999997654
No 306
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.57 E-value=2.8e-15 Score=108.86 Aligned_cols=85 Identities=15% Similarity=0.352 Sum_probs=72.3
Q ss_pred CCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHH
Q 022981 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAI 198 (289)
Q Consensus 119 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~ 198 (289)
......++|||+|||..+++++|.++|.+|| |..+.|..+... +|.++|||||+|.+.++|.+|+
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~--------------~g~~~g~afV~f~~~~~a~~Ai 78 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSN--------------PERLKGFGYAEFEDLDSLLSAL 78 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTT--------------TCCCCSCEEEEECCHHHHHHHH
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCc--------------CCccCeEEEEEECCHHHHHHHH
Confidence 3345677999999999999999999999999 999999988721 5688999999999999999999
Q ss_pred HhcCCcccCCccccceeeeeccCCC
Q 022981 199 RKLDDTEFRNPWARGRITVKRYDRS 223 (289)
Q Consensus 199 ~~~~~~~~~~~~~g~~i~v~~~~~~ 223 (289)
.|++..+. |+.|.|+.+...
T Consensus 79 -~l~g~~~~----g~~l~V~~a~~~ 98 (100)
T 2j76_E 79 -SLNEESLG----NRRIRVDVADQA 98 (100)
T ss_dssp -HTTTCCBT----TBCCCCEECCCS
T ss_pred -hcCCCEEC----CeEEEEEeccCC
Confidence 89999998 899999988653
No 307
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=6e-15 Score=109.75 Aligned_cols=81 Identities=14% Similarity=0.113 Sum_probs=72.8
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHHhcCCe-eEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHH
Q 022981 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDV-CFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIR 199 (289)
Q Consensus 121 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 199 (289)
..+..+|||+|||+.+++++|.++|..||.| ..+.|+.+..| .++|||||+|.+.++|.+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g----------------~~~G~afV~F~~~~~a~~Al~ 75 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNG----------------QGLGQALVQFKNEDDARKSER 75 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTS----------------SCSSCEEEECSSHHHHHHHGG
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCC----------------CcceEEEEEECCHHHHHHHHH
Confidence 3456799999999999999999999999999 88998887653 789999999999999999998
Q ss_pred hcCCcccCCccccceeeeeccCC
Q 022981 200 KLDDTEFRNPWARGRITVKRYDR 222 (289)
Q Consensus 200 ~~~~~~~~~~~~g~~i~v~~~~~ 222 (289)
. ++..+. ++.|.|..+..
T Consensus 76 ~-~~~~~~----gr~i~v~~a~~ 93 (114)
T 2cpy_A 76 L-HRKKLN----GREAFVHVVTL 93 (114)
T ss_dssp G-CSEEET----TEEEEEEEECH
T ss_pred h-CCCccC----CeEEEEEECCH
Confidence 7 999988 99999998863
No 308
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3.4e-14 Score=102.81 Aligned_cols=78 Identities=23% Similarity=0.234 Sum_probs=69.5
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHHhc--CCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHH
Q 022981 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKA--GDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYA 197 (289)
Q Consensus 120 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~--g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 197 (289)
...+.++|||+|||..+++++|.++|.+| |.|..+.+.+ |||||+|.+.++|.+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~-----------------------g~afV~f~~~~~A~~A 67 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIR-----------------------DYAFVHFSNREDAVEA 67 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECS-----------------------SEEEEEESSHHHHHHH
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeC-----------------------CeEEEEeCCHHHHHHH
Confidence 34566799999999999999999999999 8998877643 6999999999999999
Q ss_pred HHhcCCcccCCccccceeeeeccCCCC
Q 022981 198 IRKLDDTEFRNPWARGRITVKRYDRSP 224 (289)
Q Consensus 198 ~~~~~~~~~~~~~~g~~i~v~~~~~~~ 224 (289)
+..|++..+. |+.|.|+.+....
T Consensus 68 ~~~l~g~~~~----g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 68 MKALNGKVLD----GSPIEVTLAKPVD 90 (99)
T ss_dssp HHHHSSEEET----TEEEEEECCCCCC
T ss_pred HHHhCCCEeC----CcEEEEEECCCCC
Confidence 9999999998 9999999987543
No 309
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=2.3e-14 Score=102.34 Aligned_cols=77 Identities=25% Similarity=0.380 Sum_probs=70.3
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 121 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
....++|||+|||..+++++|+++|.+||.|..+.+.+ +||||+|.+.++|.+|++.
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~-----------------------~~afV~f~~~~~a~~A~~~ 63 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK-----------------------DYAFVHMERAEDAVEAIRG 63 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS-----------------------SEEEEEESCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC-----------------------CEEEEEECCHHHHHHHHHH
Confidence 35667999999999999999999999999999998874 4999999999999999999
Q ss_pred cCCcccCCccccceeeeeccCCCC
Q 022981 201 LDDTEFRNPWARGRITVKRYDRSP 224 (289)
Q Consensus 201 ~~~~~~~~~~~g~~i~v~~~~~~~ 224 (289)
|++..+. |+.|.|+.+....
T Consensus 64 l~g~~~~----g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 64 LDNTEFQ----GKRMHVQLSTSRL 83 (92)
T ss_dssp HTTEEET----TEEEEEEESSCCC
T ss_pred hCCCeeC----CcEEEEEEccCCC
Confidence 9999998 9999999997543
No 310
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.56 E-value=3.3e-15 Score=108.62 Aligned_cols=82 Identities=16% Similarity=0.202 Sum_probs=71.5
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhc
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKL 201 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 201 (289)
....+|||+|||..+++++|.++|.+||.|.. .++.+.. +|.++|||||+|.+.++|.+|++ |
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~---------------~g~~~g~afV~f~~~~~a~~A~~-l 77 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVR---------------TGTNRKFGYVDFESAEDLEKALE-L 77 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEE---------------EETTTTEEEEEESSHHHHHHHHH-G
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCC---------------CCCcCcEEEEEECCHHHHHHHHh-c
Confidence 35679999999999999999999999999877 4444433 67889999999999999999999 9
Q ss_pred CCcccCCccccceeeeeccCCCC
Q 022981 202 DDTEFRNPWARGRITVKRYDRSP 224 (289)
Q Consensus 202 ~~~~~~~~~~g~~i~v~~~~~~~ 224 (289)
++..+. |+.|.|..+....
T Consensus 78 ~g~~~~----g~~l~V~~a~~~~ 96 (101)
T 1fj7_A 78 TGLKVF----GNEIKLEKPKGRD 96 (101)
T ss_dssp GGCCBT----TBCCEEECCSCCC
T ss_pred CCcEEC----CcEEEEEEcCCCC
Confidence 999998 9999999987543
No 311
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.9e-14 Score=102.28 Aligned_cols=77 Identities=22% Similarity=0.399 Sum_probs=70.0
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhc
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKL 201 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 201 (289)
.+.++|||+|||..+++++|.++|.+||.|..+.+.+ +||||+|.+.++|.+|++.|
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~-----------------------~~afV~f~~~~~a~~A~~~l 63 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK-----------------------DYAFVHMEKEADAKAAIAQL 63 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS-----------------------SCEEEEESCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC-----------------------CEEEEEECCHHHHHHHHHHh
Confidence 4567999999999999999999999999999998874 48999999999999999999
Q ss_pred CCcccCCccccceeeeeccCCCCC
Q 022981 202 DDTEFRNPWARGRITVKRYDRSPS 225 (289)
Q Consensus 202 ~~~~~~~~~~g~~i~v~~~~~~~~ 225 (289)
++..+. |+.|.|+.+.....
T Consensus 64 ~g~~~~----g~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 64 NGKEVK----GKRINVELSTKGQK 83 (90)
T ss_dssp TTCEET----TEECEEEESCCCCC
T ss_pred CCCEEC----CcEEEEEECCCCCC
Confidence 999998 99999999976543
No 312
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.56 E-value=6e-15 Score=101.11 Aligned_cols=75 Identities=15% Similarity=0.247 Sum_probs=68.1
Q ss_pred eeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcc
Q 022981 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTE 205 (289)
Q Consensus 126 ~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~ 205 (289)
+|||+|||..+++++|.++|++||.|..+.+..++. +|.++|||||+|.+.++|.+|++. ++..
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---------------~~~~~g~afV~f~~~~~a~~Ai~~-~~~~ 64 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK---------------TNKRRGFCFITFKEEEPVKKIMEK-KYHN 64 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCC---------------CSSSCCCEEEECSSSHHHHHHHTT-SSCC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC---------------CCCcCCEEEEEECCHHHHHHHHHh-CCCe
Confidence 589999999999999999999999999999998877 678899999999999999999984 8888
Q ss_pred cCCccccceeeeecc
Q 022981 206 FRNPWARGRITVKRY 220 (289)
Q Consensus 206 ~~~~~~g~~i~v~~~ 220 (289)
+. |+.|.|+.+
T Consensus 65 ~~----g~~l~v~~a 75 (75)
T 1iqt_A 65 VG----LSKCEIKVA 75 (75)
T ss_dssp BT----TBCCCEEEC
T ss_pred EC----CEEEEEEEC
Confidence 87 888888754
No 313
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=8.4e-15 Score=106.32 Aligned_cols=76 Identities=11% Similarity=0.060 Sum_probs=68.1
Q ss_pred CCcceeeecCCCC-CCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 122 HSEYRVIVRGLPS-SASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 122 ~~~~~l~v~nlp~-~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
.+..+|||+|||+ .+++++|.++|.+||.|..+.|+.+ ++||||+|++.++|..|++.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~---------------------kg~aFVef~~~~~A~~Ai~~ 71 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK---------------------INEAFIEMATTEDAQAAVDY 71 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS---------------------SSCEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC---------------------CCEEEEEECCHHHHHHHHHH
Confidence 3567999999999 9999999999999999999998764 36999999999999999999
Q ss_pred cCCcc--cCCccccceeeeeccCC
Q 022981 201 LDDTE--FRNPWARGRITVKRYDR 222 (289)
Q Consensus 201 ~~~~~--~~~~~~g~~i~v~~~~~ 222 (289)
|++.. +. |++|.|..+..
T Consensus 72 l~~~~~~~~----Gr~l~V~~a~~ 91 (102)
T 1x4d_A 72 YTTTPALVF----GKPVRVHLSQK 91 (102)
T ss_dssp HHHSCCEET----TEECEEEEECC
T ss_pred HcCCCceEC----CcEEEEEECCC
Confidence 98754 66 99999999874
No 314
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.55 E-value=9.8e-15 Score=121.93 Aligned_cols=80 Identities=14% Similarity=0.129 Sum_probs=74.4
Q ss_pred CcceeeecCCCCCCCHHHHHHHHHhcC--CeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 123 SEYRVIVRGLPSSASWQDLKDHMRKAG--DVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 123 ~~~~l~v~nlp~~~~~~~l~~~f~~~g--~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
..++|||+|||+.+++++|+++|.+|| .|..+.|+.+.. ||+++|||||+|.+.++|.+||+.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~---------------tg~skGfaFV~f~~~~~a~~Ai~~ 131 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRA---------------NGQSKGFALVGVGSEASSKKLMDL 131 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTT---------------TCCEEEEEEEEESCTTHHHHHHTT
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCC---------------CCccceEEEEEECCHHHHHHHHHH
Confidence 456899999999999999999999999 999999999877 779999999999999999999999
Q ss_pred cCCcccCCccccceeeeeccC
Q 022981 201 LDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 201 ~~~~~~~~~~~g~~i~v~~~~ 221 (289)
|++..|. ++.|.|+.+.
T Consensus 132 lng~~~~----Gr~l~V~~a~ 148 (229)
T 3q2s_C 132 LPKRELH----GQNPVVTPVN 148 (229)
T ss_dssp STTSCBT----TBCCEEEECC
T ss_pred cCCCeEC----CEEeEEEECC
Confidence 9999998 9999999875
No 315
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=6.2e-15 Score=109.77 Aligned_cols=81 Identities=7% Similarity=0.024 Sum_probs=70.3
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHhcCCee----EEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHH
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVC----FAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYA 197 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 197 (289)
.+.++|||+|||..+++++|.++|.+||.|. .+.+. ++.++|||||+|.+.++|.+|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-------------------~g~~~g~afV~f~~~~~a~~A 83 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-------------------TGRMRGQAFITFPNKEIAWQA 83 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-------------------CSSSCSEEEEECSSHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-------------------CCccceEEEEEECCHHHHHHH
Confidence 4567999999999999999999999999984 44443 236789999999999999999
Q ss_pred HHhcCCcccCCccccceeeeeccCCCCC
Q 022981 198 IRKLDDTEFRNPWARGRITVKRYDRSPS 225 (289)
Q Consensus 198 ~~~~~~~~~~~~~~g~~i~v~~~~~~~~ 225 (289)
++.|++..+. |+.|.|+.+.....
T Consensus 84 i~~l~g~~~~----g~~l~v~~a~~~~~ 107 (115)
T 2cpx_A 84 LHLVNGYKLY----GKILVIEFGKNKKQ 107 (115)
T ss_dssp HHHSTTCBCS----SCBCEEEECCCCSC
T ss_pred HHHhCCCEeC----CcEEEEEEccCCCC
Confidence 9999999998 99999999975443
No 316
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=4.5e-14 Score=102.19 Aligned_cols=80 Identities=19% Similarity=0.260 Sum_probs=71.9
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 121 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
..+.++|||+|||..+++++|+++|.+||.|..+.+..+ +|||||+|.+.++|.+|++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~---------------------kg~afV~f~~~~~a~~a~~~ 70 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD---------------------KGFGFIRLETRTLAEIAKVE 70 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT---------------------TTEEEEECSSSHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC---------------------CCEEEEEECCHHHHHHHHHH
Confidence 345679999999999999999999999999999998753 47999999999999999999
Q ss_pred cCCcccCCccccceeeeeccCCCCC
Q 022981 201 LDDTEFRNPWARGRITVKRYDRSPS 225 (289)
Q Consensus 201 ~~~~~~~~~~~g~~i~v~~~~~~~~ 225 (289)
|++..+. |+.|.|+.+.....
T Consensus 71 l~g~~~~----g~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 71 LDNMPLR----GKQLRVRFACHSAS 91 (99)
T ss_dssp HTTCCBT----TBCCEEEESSCCSC
T ss_pred hCCCEeC----CceEEEEEcCCCCC
Confidence 9999998 89999999876443
No 317
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.55 E-value=1.1e-14 Score=104.98 Aligned_cols=82 Identities=13% Similarity=0.173 Sum_probs=73.0
Q ss_pred CCCcceeeecCCCCCCCHHHHH----HHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHH
Q 022981 121 RHSEYRVIVRGLPSSASWQDLK----DHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKY 196 (289)
Q Consensus 121 ~~~~~~l~v~nlp~~~~~~~l~----~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~ 196 (289)
..+.++|||+|||..+++++|. ++|.+||.|..+.+.. +|.++|||||+|.+.++|..
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~------------------~~~~~g~afV~f~~~~~A~~ 66 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR------------------SLKMRGQAFVIFKEVSSATN 66 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH------------------HHHHTTCEEEEESSHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc------------------CCCcCcEEEEEeCCHHHHHH
Confidence 3456799999999999999999 9999999999988874 45678999999999999999
Q ss_pred HHHhcCCcccCCccccceeeeeccCCCC
Q 022981 197 AIRKLDDTEFRNPWARGRITVKRYDRSP 224 (289)
Q Consensus 197 a~~~~~~~~~~~~~~g~~i~v~~~~~~~ 224 (289)
|++.|++..+. |+.|.|..+....
T Consensus 67 A~~~l~g~~~~----g~~l~v~~a~~~~ 90 (97)
T 1nu4_A 67 ALRSMQGFPFY----DKPMRIQYAKTDS 90 (97)
T ss_dssp HHHHHTTCEET----TEECEEEECSSCC
T ss_pred HHHHhCCCEEC----CcEEEEEEccCCC
Confidence 99999999998 9999999987543
No 318
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.55 E-value=8.8e-14 Score=102.66 Aligned_cols=76 Identities=17% Similarity=0.251 Sum_probs=68.9
Q ss_pred CCCcceeeecCCCCC-CCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHH
Q 022981 121 RHSEYRVIVRGLPSS-ASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIR 199 (289)
Q Consensus 121 ~~~~~~l~v~nlp~~-~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 199 (289)
....++|||+|||.. +++++|.++|.+||.|..+.+. ++||||+|.+.++|.+|++
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~-----------------------~g~afV~f~~~~~A~~A~~ 80 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVH-----------------------KGYAFVQYSNERHARAAVL 80 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEE-----------------------TTEEEEECSSSHHHHHHHH
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEe-----------------------CCEEEEEECCHHHHHHHHH
Confidence 344579999999999 9999999999999999999882 3799999999999999999
Q ss_pred hcCCcccCCccccceeeeeccCCC
Q 022981 200 KLDDTEFRNPWARGRITVKRYDRS 223 (289)
Q Consensus 200 ~~~~~~~~~~~~g~~i~v~~~~~~ 223 (289)
.|++..+. |+.|.|+.+...
T Consensus 81 ~l~g~~~~----g~~l~V~~a~~~ 100 (110)
T 1wf1_A 81 GENGRVLA----GQTLDINMAGEP 100 (110)
T ss_dssp HHTTCEET----TEECCEEESCCC
T ss_pred HcCCCEEC----CeEEEEEECCCC
Confidence 99999998 999999998743
No 319
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=3.9e-14 Score=101.87 Aligned_cols=83 Identities=20% Similarity=0.297 Sum_probs=72.6
Q ss_pred CCCCCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEE-EEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHH
Q 022981 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA-EVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKY 196 (289)
Q Consensus 118 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~ 196 (289)
.+.....++|||+|||+.+++++|.++|.+||.|..+ .+..++. .+.|||+|.+.++|.+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~-------------------~~~afV~f~~~~~a~~ 69 (96)
T 2e44_A 9 VPKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE-------------------TAVVNVTYSSKDQARQ 69 (96)
T ss_dssp CCCCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS-------------------SEEEEEEESSHHHHHH
T ss_pred CCCCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC-------------------CCEEEEEECCHHHHHH
Confidence 3444566799999999999999999999999999999 4777766 2459999999999999
Q ss_pred HHHhcCCcccCCccccceeeeeccCCC
Q 022981 197 AIRKLDDTEFRNPWARGRITVKRYDRS 223 (289)
Q Consensus 197 a~~~~~~~~~~~~~~g~~i~v~~~~~~ 223 (289)
|++.|++..+. |+.|.|+.+...
T Consensus 70 Ai~~l~g~~~~----g~~l~V~~a~~~ 92 (96)
T 2e44_A 70 ALDKLNGFQLE----NFTLKVAYIPDE 92 (96)
T ss_dssp HHHHHTTCBCS----SCBCEEEECCCC
T ss_pred HHHHhCCCEEC----CcEEEEEEcCcc
Confidence 99999999998 999999988653
No 320
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=5.1e-14 Score=102.74 Aligned_cols=77 Identities=19% Similarity=0.224 Sum_probs=67.9
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhc
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKL 201 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 201 (289)
.+..+|||+|||+.+++++|.++|.+||.|..+.|..+ +|||||+|++.++|.+|++.|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~---------------------kg~aFVef~~~~~A~~Ai~~l 71 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF---------------------KRQALVEFENIDSAKECVTFA 71 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT---------------------TTEEEEEESSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC---------------------CCEEEEEECCHHHHHHHHHHh
Confidence 45679999999999999999999999999999988763 479999999999999999988
Q ss_pred CCcc--cCCccccceeeeeccCCC
Q 022981 202 DDTE--FRNPWARGRITVKRYDRS 223 (289)
Q Consensus 202 ~~~~--~~~~~~g~~i~v~~~~~~ 223 (289)
++.. +. |+.|.|+.+...
T Consensus 72 ~~~~~~i~----Gr~l~V~~a~~~ 91 (104)
T 1wex_A 72 ADVPVYIA----GQQAFFNYSTSK 91 (104)
T ss_dssp HHSCCBSS----SSBCEEEECSSS
T ss_pred ccCCceEC----CEEEEEEEccCc
Confidence 7654 66 899999998743
No 321
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=7e-14 Score=101.06 Aligned_cols=76 Identities=21% Similarity=0.304 Sum_probs=65.0
Q ss_pred CCCCeEEEcCCC-------CCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEE
Q 022981 4 RFSRTIYVGNLP-------SDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (289)
Q Consensus 4 ~~~~~l~V~nLp-------~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 76 (289)
....+|.|.-.+ .++++++|+++|++||.|.+|.|+ +.++|||||+|.+.++|+.||..+++ +.|++|.
T Consensus 8 ~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~--~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~ 83 (100)
T 2d9o_A 8 QGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS--SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLK 83 (100)
T ss_dssp CSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE--SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCE
T ss_pred CccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc--cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEE
Confidence 345677776654 458999999999999999999997 46799999999999999999997544 6799999
Q ss_pred EEEccCC
Q 022981 77 VELAHGG 83 (289)
Q Consensus 77 v~~~~~~ 83 (289)
|.|+...
T Consensus 84 V~~a~~~ 90 (100)
T 2d9o_A 84 ISWLEGQ 90 (100)
T ss_dssp EECSSCC
T ss_pred EEEccCC
Confidence 9999865
No 322
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.9e-14 Score=101.98 Aligned_cols=78 Identities=17% Similarity=0.185 Sum_probs=67.9
Q ss_pred CcceeeecCCCCCCCHHHHHHHHHhcCC-eeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhc
Q 022981 123 SEYRVIVRGLPSSASWQDLKDHMRKAGD-VCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKL 201 (289)
Q Consensus 123 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~-v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 201 (289)
..++|||+|||..+++++|+++|.+||. |..+.+.. +|||||+|.+.++|.+|++.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~----------------------~g~afV~f~~~~~A~~A~~~l 64 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLK----------------------SGYAFVDYPDQNWAIRAIETL 64 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEE----------------------TTEEEECCSCHHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcC----------------------CCEEEEEECCHHHHHHHHHHc
Confidence 4569999999999999999999999999 66555532 579999999999999999999
Q ss_pred CC-cccCCccccceeeeeccCCCCCC
Q 022981 202 DD-TEFRNPWARGRITVKRYDRSPSR 226 (289)
Q Consensus 202 ~~-~~~~~~~~g~~i~v~~~~~~~~r 226 (289)
++ ..+. |+.|.|+.+.....+
T Consensus 65 ~g~~~~~----g~~l~v~~a~~~~~~ 86 (93)
T 2cqh_A 65 SGKVELH----GKIMEVDYSVSKKLR 86 (93)
T ss_dssp TTTCEET----TEECEEEECCCCCCC
T ss_pred cCCeeEC----CEEEEEEEccCcccc
Confidence 99 8888 999999999765443
No 323
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.54 E-value=3.8e-15 Score=108.88 Aligned_cols=70 Identities=23% Similarity=0.397 Sum_probs=60.6
Q ss_pred EcCCCCCccHHHHHHHH------------hhcCCeeEEEEccC--CCCCceEEEEEccHHHHHHHHHHhCCceeCCceEE
Q 022981 11 VGNLPSDIREYEVEDLF------------YKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (289)
Q Consensus 11 V~nLp~~~t~~~L~~~F------------~~~G~i~~v~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 76 (289)
+.|||..+++++|++.| ++||+|.+|.|..+ ++++|||||+|.++++|++|+..|||..|+|+.|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45566667777777666 99999999999764 56799999999999999999999999999999999
Q ss_pred EEEc
Q 022981 77 VELA 80 (289)
Q Consensus 77 v~~~ 80 (289)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 324
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=4.2e-15 Score=111.80 Aligned_cols=80 Identities=16% Similarity=0.132 Sum_probs=70.4
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHHhcCCe----eEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHH
Q 022981 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDV----CFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKY 196 (289)
Q Consensus 121 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~ 196 (289)
.....+|||+|||+.+++++|+++|++||.| ..+.|+.+.. |+++|||||+|.+.++|.+
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~----------------gr~~G~aFV~F~~~~~A~~ 83 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPD----------------GRPTGDAFVLFACEEYAQN 83 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTT----------------SCEEEEEEECCSSHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCC----------------CCEeeEEEEEECCHHHHHH
Confidence 3566799999999999999999999999985 6888888744 5889999999999999999
Q ss_pred HHHhcCCcccCCccccceeeeeccC
Q 022981 197 AIRKLDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 197 a~~~~~~~~~~~~~~g~~i~v~~~~ 221 (289)
|++. ++..+. ++.|.|..+.
T Consensus 84 Al~~-~~~~l~----gR~i~V~~a~ 103 (123)
T 2dha_A 84 ALRK-HKDLLG----KRYIELFRST 103 (123)
T ss_dssp HHTT-TTEESS----SCEECCEEEC
T ss_pred HHHh-CCCeeC----CeEEEEEECC
Confidence 9996 888887 8899988764
No 325
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.54 E-value=1.2e-14 Score=109.59 Aligned_cols=80 Identities=18% Similarity=0.212 Sum_probs=69.1
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHHhcCCee--EEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHH
Q 022981 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVC--FAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYA 197 (289)
Q Consensus 120 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 197 (289)
+.....+|||+|||+.+++++|+++|+.| .|. .+.|+.++.| +++|||||+|.+.++|.+|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~G----------------rsrGfaFV~F~~~e~A~~A 100 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEG----------------KITGEAFVQFASQELAEKA 100 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSS----------------SSCSEEEEEESSTTHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCC----------------CCceEEEEEECCHHHHHHH
Confidence 34556789999999999999999999999 566 8888887664 7899999999999999999
Q ss_pred HHhcCCcccCCccccceeeeeccC
Q 022981 198 IRKLDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 198 ~~~~~~~~~~~~~~g~~i~v~~~~ 221 (289)
++. ++..+. ++.|.|..+.
T Consensus 101 l~~-~~~~l~----gR~I~V~~a~ 119 (126)
T 2hgm_A 101 LGK-HKERIG----HRYIEVFKSS 119 (126)
T ss_dssp HTT-TTCCBT----TBCCCCEEEC
T ss_pred HHH-CCCEEC----CEEEEEEECC
Confidence 984 778887 8999988764
No 326
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=8.7e-14 Score=100.27 Aligned_cols=81 Identities=17% Similarity=0.287 Sum_probs=70.7
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhc
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKL 201 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 201 (289)
.+.++|||+|||..+++++|.++|.+||.|..+.+..+ ++||||+|.+.++|++|++.|
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~---------------------~g~afV~f~~~~~A~~A~~~l 73 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---------------------DSFAYIQYESLDAAQAACAKM 73 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS---------------------SCCEEEEESSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC---------------------CCEEEEEECCHHHHHHHHHHH
Confidence 45579999999999999999999999999999988763 469999999999999999999
Q ss_pred CCcccCCccccceeeeeccCCCCC
Q 022981 202 DDTEFRNPWARGRITVKRYDRSPS 225 (289)
Q Consensus 202 ~~~~~~~~~~g~~i~v~~~~~~~~ 225 (289)
++..+.+ .++.|.|+.+...+.
T Consensus 74 ~g~~~~~--~g~~l~V~~a~~~~~ 95 (97)
T 1why_A 74 RGFPLGG--PDRRLRVDFAKSGPS 95 (97)
T ss_dssp TTCBCSS--SSCBCEEEECCCCCC
T ss_pred CCCEeCC--CCcEEEEEECCCCCC
Confidence 9998762 268999999876543
No 327
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.54 E-value=5.9e-15 Score=110.11 Aligned_cols=78 Identities=24% Similarity=0.276 Sum_probs=68.5
Q ss_pred CCCCeEEEcCCCC-----CccHHHHHHHHhhcCCeeEEEEccC-------CCCCceEEEEEccHHHHHHHHHHhCCceeC
Q 022981 4 RFSRTIYVGNLPS-----DIREYEVEDLFYKYGRILDIELKIP-------PRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (289)
Q Consensus 4 ~~~~~l~V~nLp~-----~~t~~~L~~~F~~~G~i~~v~~~~~-------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 71 (289)
.|+++|+|.|+-. +-.++||++.|++||+|.+|.|..+ +..+|||||+|.++++|.+|+..|||..|+
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 5899999999932 2347999999999999999999653 245699999999999999999999999999
Q ss_pred CceEEEEEcc
Q 022981 72 GCRLRVELAH 81 (289)
Q Consensus 72 g~~l~v~~~~ 81 (289)
|+.|.|.++.
T Consensus 98 GR~i~v~~~~ 107 (118)
T 3ue2_A 98 GRKVVAEVYD 107 (118)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEEcC
Confidence 9999999975
No 328
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.54 E-value=2.9e-14 Score=102.62 Aligned_cols=76 Identities=16% Similarity=0.179 Sum_probs=68.1
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhc
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKL 201 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 201 (289)
.+..+|||+|||+.+++++|.++|.+||.|..+.+.+. +|+|||+|++.++|.+|++.|
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~---------------------kg~AFVef~~~~~A~~Av~~l 77 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK---------------------KRQALVEFEDVLGACNAVNYA 77 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT---------------------TTEEEEEESSHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC---------------------CCEEEEEECCHHHHHHHHHHh
Confidence 35679999999999999999999999999999998752 579999999999999999999
Q ss_pred CCcc--cCCccccceeeeeccCC
Q 022981 202 DDTE--FRNPWARGRITVKRYDR 222 (289)
Q Consensus 202 ~~~~--~~~~~~g~~i~v~~~~~ 222 (289)
++.. +. |++|.|+.++.
T Consensus 78 n~~~~~i~----Gr~i~V~~S~~ 96 (100)
T 3r27_A 78 ADNQIYIA----GHPAFVNYSTS 96 (100)
T ss_dssp HHSCEEET----TEEEEEEECSC
T ss_pred cCCCceeC----CcEEEEEeccc
Confidence 9876 55 89999998864
No 329
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.53 E-value=1e-14 Score=107.24 Aligned_cols=80 Identities=11% Similarity=0.161 Sum_probs=72.4
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHHhcCC---eeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHH
Q 022981 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGD---VCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYA 197 (289)
Q Consensus 121 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~---v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 197 (289)
....++|||+|||+.+++++|.++|..||. |..+.|..+..| .++|||||+|.+.++|.+|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g----------------~~~G~afV~F~~~~~a~~A 71 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDG----------------KRRGDALIEMESEQDVQKA 71 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTS----------------TTCSEEEEEBSSHHHHHHH
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCC----------------CEeeEEEEEECCHHHHHHH
Confidence 346679999999999999999999999988 899999887664 7899999999999999999
Q ss_pred HHhcCCcccCCccccceeeeeccC
Q 022981 198 IRKLDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 198 ~~~~~~~~~~~~~~g~~i~v~~~~ 221 (289)
++ +++..+. ++.|.|..+.
T Consensus 72 l~-~~~~~~~----gr~i~V~~a~ 90 (107)
T 2lmi_A 72 LE-KHRMYMG----QRYVEVYEIN 90 (107)
T ss_dssp HT-TTTCCSS----SSCCCCEECC
T ss_pred HH-hCcceeC----CeEEEEEECC
Confidence 99 9999988 8999998875
No 330
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.53 E-value=2.3e-14 Score=125.68 Aligned_cols=77 Identities=14% Similarity=0.245 Sum_probs=67.9
Q ss_pred CCCCCCeEEEcC--CCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeC---Cc--e
Q 022981 2 SGRFSRTIYVGN--LPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD---GC--R 74 (289)
Q Consensus 2 ~~~~~~~l~V~n--Lp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~--~ 74 (289)
++.|+.+|||+| |+..+|+++|+++|++||+|..|.+.. .+|||||+|.+.++|++|++.|||..+. |+ .
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~---~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT---TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 458999999999 578999999999999999999987754 4899999999999999999999999883 45 6
Q ss_pred EEEEEcc
Q 022981 75 LRVELAH 81 (289)
Q Consensus 75 l~v~~~~ 81 (289)
|.|.++.
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 7778775
No 331
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.53 E-value=3.8e-14 Score=104.31 Aligned_cols=79 Identities=18% Similarity=0.277 Sum_probs=70.9
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 121 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
....++|||+|||..+++++|.++|.+||.|..+.+. . |||||+|.+.++|.+|++.
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---k--------------------g~afV~f~~~~~A~~Ai~~ 84 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---N--------------------GFAFVEFEEAESAAKAIEE 84 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---T--------------------TEEEEECSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---C--------------------CEEEEEECCHHHHHHHHHH
Confidence 4566799999999999999999999999999999987 3 6999999999999999999
Q ss_pred cCCcccCCccccceeeeeccCCCCCC
Q 022981 201 LDDTEFRNPWARGRITVKRYDRSPSR 226 (289)
Q Consensus 201 ~~~~~~~~~~~g~~i~v~~~~~~~~r 226 (289)
|++..+. |+.|.|+.+...+.+
T Consensus 85 l~g~~~~----g~~l~V~~a~~~~~r 106 (108)
T 2jvo_A 85 VHGKSFA----NQPLEVVYSKLPAKR 106 (108)
T ss_dssp HTTCEET----TEECEEESCSCCC--
T ss_pred cCCCEEC----CeEEEEEEecCCCCC
Confidence 9999998 999999999765543
No 332
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=5.5e-14 Score=98.68 Aligned_cols=76 Identities=17% Similarity=0.244 Sum_probs=68.6
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 121 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
..+.++|||+|||..+++++|.++|.+||.|..+.+..+ +|||||+|.+.++|.+|++.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~---------------------kg~afV~f~~~~~A~~a~~~ 67 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR---------------------QQCAFIQFATRQAAEVAAEK 67 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG---------------------GTEEEEEESSHHHHHHHHHT
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC---------------------CCEEEEEECCHHHHHHHHHH
Confidence 456679999999999999999999999999999998863 47999999999999999999
Q ss_pred c-CCcccCCccccceeeeeccC
Q 022981 201 L-DDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 201 ~-~~~~~~~~~~g~~i~v~~~~ 221 (289)
| ++..+. |+.|.|+.++
T Consensus 68 l~~~~~~~----g~~l~v~~ak 85 (85)
T 2ytc_A 68 SFNKLIVN----GRRLNVKWGR 85 (85)
T ss_dssp TTTTCEET----TEECCEEECC
T ss_pred hcCCeeEC----CCEEEEEecC
Confidence 8 998888 8999998763
No 333
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=4.3e-14 Score=105.30 Aligned_cols=79 Identities=10% Similarity=0.081 Sum_probs=69.7
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 121 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
..+..+|||+|||+.+++++|.++|++||.|..+.|+.+ +|||||+|++.++|.+|++.
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~---------------------kG~AFVeF~~~e~A~~Ai~~ 86 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---------------------KNQAFIEMNTEEAANTMVNY 86 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG---------------------GTEEEEECSCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC---------------------CCEEEEEECCHHHHHHHHHH
Confidence 446679999999999999999999999999999998873 47999999999999999998
Q ss_pred cCC--cccCCccccceeeeeccCCCC
Q 022981 201 LDD--TEFRNPWARGRITVKRYDRSP 224 (289)
Q Consensus 201 ~~~--~~~~~~~~g~~i~v~~~~~~~ 224 (289)
|++ ..+. |++|.|..+....
T Consensus 87 l~~~~~~l~----Gr~l~V~~a~~k~ 108 (119)
T 2ad9_A 87 YTSVTPVLR----GQPIYIQFSNHKE 108 (119)
T ss_dssp HHHHCCCBT----TBCCEEEECSSSS
T ss_pred hccCCceEC----CeEEEEEEccCCC
Confidence 875 4677 8999999987433
No 334
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=5.9e-14 Score=101.82 Aligned_cols=78 Identities=10% Similarity=0.099 Sum_probs=68.4
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 121 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
..+.++|||+|||+.+++++|.++|.+||.|..+.++.+ +|||||+|++.++|..|++.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~---------------------kg~aFVef~~~~~A~~Ai~~ 70 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG---------------------KNQAFLELATEEAAITMVNY 70 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT---------------------TTEEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC---------------------CCEEEEEECCHHHHHHHHHH
Confidence 346679999999999999999999999999999988763 47999999999999999997
Q ss_pred cC--CcccCCccccceeeeeccCCC
Q 022981 201 LD--DTEFRNPWARGRITVKRYDRS 223 (289)
Q Consensus 201 ~~--~~~~~~~~~g~~i~v~~~~~~ 223 (289)
|+ +..+. |++|.|..+...
T Consensus 71 l~~~~~~~~----Gr~l~V~~a~~~ 91 (101)
T 2cq1_A 71 YSAVTPHLR----NQPIYIQYSNHK 91 (101)
T ss_dssp HHHSCCEET----TEECEEEECSCS
T ss_pred hccCCceEC----CcEEEEEEcCcc
Confidence 75 55677 999999998743
No 335
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.52 E-value=2.8e-14 Score=102.72 Aligned_cols=76 Identities=16% Similarity=0.288 Sum_probs=68.7
Q ss_pred CCcceeeecCCCC-CCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 122 HSEYRVIVRGLPS-SASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 122 ~~~~~l~v~nlp~-~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
.+.++|||+|||. .+++++|.++|.+||.|..+.+.+ |||||+|.+.++|..|++.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~-----------------------g~afV~f~~~~~A~~A~~~ 64 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKN-----------------------AFGFIQFDNPQSVRDAIEC 64 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEET-----------------------TEEEEEESCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeC-----------------------CEEEEEECCHHHHHHHHHH
Confidence 4567999999998 999999999999999999998852 6999999999999999999
Q ss_pred cCCcccCCccccceeeeeccCCCC
Q 022981 201 LDDTEFRNPWARGRITVKRYDRSP 224 (289)
Q Consensus 201 ~~~~~~~~~~~g~~i~v~~~~~~~ 224 (289)
|++..+. |+.|.|+.+....
T Consensus 65 l~g~~~~----g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 65 ESQEMNF----GKKLILEVSSSNA 84 (96)
T ss_dssp HTCSSCB----TTTBCEEEEECCC
T ss_pred cCCCeeC----CcEEEEEEcCcCC
Confidence 9999998 8999999986543
No 336
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.52 E-value=6e-14 Score=104.37 Aligned_cols=79 Identities=20% Similarity=0.247 Sum_probs=71.9
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhc
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKL 201 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 201 (289)
.+..+|||+|||..+++++|.++|..||.|..+.+..+.. ++|||||+|.+.++|.+|++.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~------------------~~g~afV~f~~~~~A~~A~~~l 67 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPE------------------TRGTAYVVYEDIFDAKNAVDHL 67 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTT------------------TTTCEEEEESSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC------------------CCcEEEEEECCHHHHHHHHHHc
Confidence 4567999999999999999999999999999999987543 4799999999999999999999
Q ss_pred CCcccCCccccceeeeeccCC
Q 022981 202 DDTEFRNPWARGRITVKRYDR 222 (289)
Q Consensus 202 ~~~~~~~~~~g~~i~v~~~~~ 222 (289)
+|..+. |+.|.|..+..
T Consensus 68 ~g~~~~----g~~l~v~~a~~ 84 (115)
T 3lqv_A 68 SGFNVS----NRYLVVLYYNA 84 (115)
T ss_dssp TTCBSS----SCBCEEEECCH
T ss_pred CCCEEC----CeEEEEEEecC
Confidence 999998 89999998863
No 337
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.52 E-value=9.7e-14 Score=108.64 Aligned_cols=82 Identities=18% Similarity=0.186 Sum_probs=71.0
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 121 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
......|||+||++.+++++|.++|++||.|..+.|..... ++||||+|.+.++|.+|++.
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~-------------------rgfAFVeF~d~~~A~~Ai~~ 103 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNN-------------------QFQALLQYADPVSAQHAKLS 103 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSS-------------------CEEEEEEESCHHHHHHHHHH
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCC-------------------CCEEEEEECCHHHHHHHHHH
Confidence 34456899999999999999999999999999999975433 58999999999999999999
Q ss_pred cCCcccCCccccceeeeeccCCC
Q 022981 201 LDDTEFRNPWARGRITVKRYDRS 223 (289)
Q Consensus 201 ~~~~~~~~~~~g~~i~v~~~~~~ 223 (289)
|+|..+.+ .++.|+|+.++..
T Consensus 104 LnG~~i~g--~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 104 LDGQNIYN--ACCTLRIDFSKLT 124 (164)
T ss_dssp STTBCSSS--SCSCEEEEECSSS
T ss_pred hCCCEecC--CCcEEEEEEecCC
Confidence 99999962 1489999998743
No 338
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=4.7e-14 Score=103.90 Aligned_cols=78 Identities=13% Similarity=0.072 Sum_probs=68.3
Q ss_pred CCCCcceeeecCCCCC-CCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHH
Q 022981 120 SRHSEYRVIVRGLPSS-ASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAI 198 (289)
Q Consensus 120 ~~~~~~~l~v~nlp~~-~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~ 198 (289)
...+.++|||+|||+. +++++|.++|.+||.|..+.|.+. +|||||+|++.++|..|+
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~---------------------kg~aFVef~~~~~A~~Ai 79 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM---------------------KSQAFIEMETREDAMAMV 79 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT---------------------TTEEEEECSSHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC---------------------CCEEEEEECCHHHHHHHH
Confidence 3456789999999998 999999999999999999998742 579999999999999999
Q ss_pred HhcCC--cccCCccccceeeeeccCC
Q 022981 199 RKLDD--TEFRNPWARGRITVKRYDR 222 (289)
Q Consensus 199 ~~~~~--~~~~~~~~g~~i~v~~~~~ 222 (289)
+.|++ ..+. |+.|.|..+..
T Consensus 80 ~~l~~~~~~l~----Gr~l~V~~a~~ 101 (112)
T 1x4f_A 80 DHCLKKALWFQ----GRCVKVDLSEK 101 (112)
T ss_dssp HHHHHSCCCSS----SSCCEEEEECS
T ss_pred HHhccCCceEC----CEEEEEEECcc
Confidence 98865 4466 89999999864
No 339
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.1e-13 Score=101.99 Aligned_cols=79 Identities=18% Similarity=0.213 Sum_probs=72.1
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhc
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKL 201 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 201 (289)
...++|||+|||..+++++|.++|.+||.|..+.|..+ +|||||+|.+.++|.+|+..|
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---------------------~g~afV~f~~~~~a~~A~~~l 81 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---------------------KGYSFVRFSTHESAAHAIVSV 81 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT---------------------TTEEEEEESSHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---------------------CCEEEEEECCHHHHHHHHHHc
Confidence 45679999999999999999999999999999998875 369999999999999999999
Q ss_pred CCcccCCccccceeeeeccCCCCC
Q 022981 202 DDTEFRNPWARGRITVKRYDRSPS 225 (289)
Q Consensus 202 ~~~~~~~~~~g~~i~v~~~~~~~~ 225 (289)
++..+. |+.|.|..+...+.
T Consensus 82 ~g~~~~----g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 82 NGTTIE----GHVVKCYWGKESPD 101 (109)
T ss_dssp TTCEET----TEECEEECCCCCCS
T ss_pred CCCEEC----CcEEEEEecCCCCC
Confidence 999988 99999999976544
No 340
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.50 E-value=8.6e-14 Score=100.37 Aligned_cols=76 Identities=17% Similarity=0.317 Sum_probs=68.7
Q ss_pred CCCCcceeeecCCCC-CCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHH
Q 022981 120 SRHSEYRVIVRGLPS-SASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAI 198 (289)
Q Consensus 120 ~~~~~~~l~v~nlp~-~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~ 198 (289)
...+.++|||+|||. .+++++|.++|.+||.|..+.+. +|||||+|.+.++|.+|+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----------------------~g~afV~f~~~~~A~~Ai 74 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----------------------NAFGFIQFDNPQSVRDAI 74 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----------------------SSEEEEEESSHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----------------------CCEEEEEECCHHHHHHHH
Confidence 345677999999998 99999999999999999999883 379999999999999999
Q ss_pred HhcCCcccCCccccceeeeeccCC
Q 022981 199 RKLDDTEFRNPWARGRITVKRYDR 222 (289)
Q Consensus 199 ~~~~~~~~~~~~~g~~i~v~~~~~ 222 (289)
+.|++..+. |+.|.|+.+..
T Consensus 75 ~~l~g~~~~----g~~l~V~~a~~ 94 (97)
T 2xnq_A 75 EXESQEMNF----GKKLILEVSSS 94 (97)
T ss_dssp HHHTTSEET----TEECEEEECCC
T ss_pred HHcCCCEEC----CEEEEEEecCC
Confidence 999999998 89999998864
No 341
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.25 E-value=1.6e-15 Score=113.27 Aligned_cols=86 Identities=21% Similarity=0.264 Sum_probs=76.7
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHhcCCeeE--------EEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHH
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF--------AEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPED 193 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~--------~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~ 193 (289)
.+.++|||+|||..+++++|.++|.+||.|.. +.|..++. ++.++|||||+|.+.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~---------------~g~~~g~afV~f~~~~~ 69 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRE---------------TGKLKGEATVSFDDPPS 69 (116)
Confidence 34569999999999999999999999999998 77777665 67889999999999999
Q ss_pred HHHHHHhcCCcccCCccccceeeeeccCCCCCC
Q 022981 194 MKYAIRKLDDTEFRNPWARGRITVKRYDRSPSR 226 (289)
Q Consensus 194 a~~a~~~~~~~~~~~~~~g~~i~v~~~~~~~~r 226 (289)
|.+|++.|++..+. |+.|.|+.+...+.+
T Consensus 70 A~~Ai~~l~g~~~~----g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 70 AKAAIDWFDGKEFS----GNPIKVSFATRRADF 98 (116)
Confidence 99999999999998 999999998765544
No 342
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.50 E-value=1e-13 Score=100.67 Aligned_cols=76 Identities=13% Similarity=0.090 Sum_probs=69.0
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhc
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKL 201 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 201 (289)
...++|||+|||..+++++|.++|.+||.|..+.+.. ++|||||+|.+.++|.+|+..|
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~---------------------~~g~afV~f~~~~~A~~Ai~~l 83 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP---------------------EKGCCFIKYDTHEQAAVCIVAL 83 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET---------------------TTTEEEEECSSHHHHHHHHHHH
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec---------------------CCCEEEEEECCHHHHHHHHHHh
Confidence 3467999999999999999999999999999999873 2579999999999999999999
Q ss_pred CCcccCCccccceeeeeccCC
Q 022981 202 DDTEFRNPWARGRITVKRYDR 222 (289)
Q Consensus 202 ~~~~~~~~~~g~~i~v~~~~~ 222 (289)
++..+. |+.|.|+.++.
T Consensus 84 ~g~~~~----g~~l~V~~a~~ 100 (101)
T 2la4_A 84 ANFPFQ----GRNLRTGWGKE 100 (101)
T ss_dssp TTCEET----TEECCCCBCCC
T ss_pred CCCeEC----CeEEEEEeccC
Confidence 999998 89999988753
No 343
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.49 E-value=1e-13 Score=111.08 Aligned_cols=80 Identities=16% Similarity=0.192 Sum_probs=73.6
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhc
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKL 201 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 201 (289)
.+.++|||+|||..+++++|.++|.+||.|..+.|..+..+ .++|||||+|.+.++|.+|++.|
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g----------------~~kG~afV~F~~~~~A~~Ai~~l 149 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSG----------------RSLGTADVHFERRADALKAMKQY 149 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTS----------------SCSCCEEEEESCHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC----------------CEeeEEEEEeCCHHHHHHHHHHh
Confidence 45679999999999999999999999999999999887643 77899999999999999999999
Q ss_pred CCcccCCccccceeeeeccC
Q 022981 202 DDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 202 ~~~~~~~~~~g~~i~v~~~~ 221 (289)
++..+. |+.|.|+.+.
T Consensus 150 ng~~l~----Gr~l~V~~a~ 165 (177)
T 2f3j_A 150 KGVPLD----GRPMDIQLVA 165 (177)
T ss_dssp TTCBCS----SSBCEEEEES
T ss_pred CCCEEC----CEEEEEEEec
Confidence 999998 8999998875
No 344
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.49 E-value=8.5e-14 Score=107.71 Aligned_cols=81 Identities=12% Similarity=0.094 Sum_probs=70.7
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHhcCCeeEE--------EEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHH
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA--------EVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPED 193 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~--------~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~ 193 (289)
.+.++|||+|||..+++++|.++|.+||.|..+ .+.. +|.++|||||+|.+.++
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~------------------~g~~~g~afV~f~~~~~ 104 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMK------------------EGRMKGQAFIGLPNEKA 104 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEE------------------ETTTEEEEEEECSSHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEecc------------------CCCcccEEEEEeCCHHH
Confidence 456799999999999999999999999998764 2222 55789999999999999
Q ss_pred HHHHHHhcCCcccCCccccceeeeeccCCCC
Q 022981 194 MKYAIRKLDDTEFRNPWARGRITVKRYDRSP 224 (289)
Q Consensus 194 a~~a~~~~~~~~~~~~~~g~~i~v~~~~~~~ 224 (289)
|.+|+..|++..+. |+.|.|..+....
T Consensus 105 A~~Ai~~lng~~~~----g~~l~V~~a~~~~ 131 (143)
T 3egn_A 105 AAKALKEANGYVLF----GKPMVVQFARSAR 131 (143)
T ss_dssp HHHHHHHHTTBEET----TEECEEEECCCSC
T ss_pred HHHHHHHhCCCEeC----CcEEEEEECCCCC
Confidence 99999999999998 9999999987543
No 345
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.49 E-value=7e-14 Score=100.53 Aligned_cols=79 Identities=10% Similarity=0.160 Sum_probs=69.6
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 121 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
..+..+|||+|||..+++++|.++|.+||.|..+ . . ++.++|||||+|.+.++|.+|++.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~--~---~---------------~~~~~g~afV~f~~~~~a~~A~~~ 72 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV--S---Q---------------DGKSKGIAYIEFKSEADAEKNLEE 72 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE--E---E---------------TTEEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe--C---C---------------CCCcceEEEEEECCHHHHHHHHHH
Confidence 3456799999999999999999999999988765 1 1 457899999999999999999999
Q ss_pred cCCcccCCccccceeeeeccCCC
Q 022981 201 LDDTEFRNPWARGRITVKRYDRS 223 (289)
Q Consensus 201 ~~~~~~~~~~~g~~i~v~~~~~~ 223 (289)
|++..+. |+.|.|+.+...
T Consensus 73 l~g~~~~----g~~l~v~~a~~~ 91 (96)
T 1fjc_A 73 KQGAEID----GRSVSLYYTGEK 91 (96)
T ss_dssp TTEEEET----TEEEEEEECSSS
T ss_pred hCCCEEC----CeEEEEEEcCCC
Confidence 9999998 999999998643
No 346
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=6.1e-14 Score=103.75 Aligned_cols=75 Identities=15% Similarity=0.311 Sum_probs=68.5
Q ss_pred CcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcC
Q 022981 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLD 202 (289)
Q Consensus 123 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~ 202 (289)
..++|||+|||..+++++|+++|.+||.|..+.|.. . ++||||+|.+.++|..|++.|+
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~--~-------------------~g~afV~f~~~~~A~~Ai~~l~ 67 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE--G-------------------GITAIVEFLEPLEARKAFRHLA 67 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS--S-------------------SSCEEEEESCHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC--C-------------------CCEEEEEeCCHHHHHHHHHHhC
Confidence 467999999999999999999999999999988764 2 5799999999999999999999
Q ss_pred CcccCCccccceeeeeccCC
Q 022981 203 DTEFRNPWARGRITVKRYDR 222 (289)
Q Consensus 203 ~~~~~~~~~g~~i~v~~~~~ 222 (289)
+..+. |+.|.|+.+..
T Consensus 68 g~~~~----g~~l~V~~a~~ 83 (111)
T 1whx_A 68 YSKFH----HVPLYLEWAPI 83 (111)
T ss_dssp TCBSS----SSBCEEEEEET
T ss_pred CCEEC----CeEEEEEECCC
Confidence 99998 89999998864
No 347
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.48 E-value=8.5e-14 Score=118.62 Aligned_cols=80 Identities=21% Similarity=0.206 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEcc--CCCCCceEEEEEccHHHHHHHHHHh-CCceeC---CceEEE
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGR-DGYNFD---GCRLRV 77 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~A~~A~~~l-~g~~~~---g~~l~v 77 (289)
.+..+|||+|||+.+|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|.+|+..| ++..+. +++|.|
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4678999999999999999999999999999999965 4677999999999999999999999 455554 999999
Q ss_pred EEccCC
Q 022981 78 ELAHGG 83 (289)
Q Consensus 78 ~~~~~~ 83 (289)
.++...
T Consensus 174 ~~~~~~ 179 (261)
T 3sde_A 174 EPMEQF 179 (261)
T ss_dssp EECCCE
T ss_pred eecccc
Confidence 999865
No 348
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.48 E-value=9.4e-14 Score=103.20 Aligned_cols=79 Identities=14% Similarity=0.139 Sum_probs=71.2
Q ss_pred ceeeecCC----CCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCC----hHH---
Q 022981 125 YRVIVRGL----PSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTN----PED--- 193 (289)
Q Consensus 125 ~~l~v~nl----p~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~----~~~--- 193 (289)
..|+|+|| |+.+++++|+++|+.||+|..+.+..++. ||.++|||||+|.+ +++
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~---------------Tg~slGfgfVef~d~~g~~d~a~k 67 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPN---------------SALPLHVYLIKYASSDGKINDAAK 67 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTT---------------TCCEEEEEEEECC------CCHHH
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC---------------CCceeeEEEEEECCCCCCcchHHH
Confidence 58999999 99999999999999999999999999999 89999999999996 433
Q ss_pred -HHHHHH--hcCCcccCCccccceeeeeccCC
Q 022981 194 -MKYAIR--KLDDTEFRNPWARGRITVKRYDR 222 (289)
Q Consensus 194 -a~~a~~--~~~~~~~~~~~~g~~i~v~~~~~ 222 (289)
|.+|+. .+++..+. |+.|+|...+.
T Consensus 68 AA~kAi~~~~lng~~I~----Gr~irV~ln~~ 95 (136)
T 2j8a_A 68 AAFSAVRKHESSGCFIM----GFKFEVILNKH 95 (136)
T ss_dssp HHHHHHHHTTTTCEEET----TEEEEEEECCT
T ss_pred HHHHHHHHhhhcCCeec----CcEEEEEECcc
Confidence 788888 78999999 99999998753
No 349
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.47 E-value=2e-13 Score=101.11 Aligned_cols=77 Identities=14% Similarity=0.132 Sum_probs=66.8
Q ss_pred CCCCeEEEcCCCCC----------ccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCc
Q 022981 4 RFSRTIYVGNLPSD----------IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC 73 (289)
Q Consensus 4 ~~~~~l~V~nLp~~----------~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 73 (289)
-+++.|.|.|+=.. -.++||++.|++||.|.+|.|..+ ..+|||||+|.+.++|++|++.|||..|+|+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~-~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN-SAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT-CTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC-CCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 46888999998322 235688999999999999998654 3589999999999999999999999999999
Q ss_pred eEEEEEcc
Q 022981 74 RLRVELAH 81 (289)
Q Consensus 74 ~l~v~~~~ 81 (289)
.|.|.++.
T Consensus 84 ~i~v~~~~ 91 (114)
T 3s6e_A 84 MITAAYVP 91 (114)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEEc
Confidence 99999986
No 350
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=3.5e-13 Score=96.46 Aligned_cols=75 Identities=15% Similarity=0.222 Sum_probs=65.2
Q ss_pred CcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcC
Q 022981 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLD 202 (289)
Q Consensus 123 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~ 202 (289)
...+|||+|||..+++++|.++|.+||.|..+ ..+.. ++. ||||+|.+.++|.+|++ |+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~---------------~g~---~afV~f~~~~~a~~ai~-l~ 65 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKD---------------KGV---FAIVEMGDVGAREAVLS-QS 65 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSS---------------SCC---EEEEEESSHHHHHHHHT-CS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCC---------------CCc---EEEEEECCHHHHHHHHh-cC
Confidence 44699999999999999999999999999987 44333 222 99999999999999999 99
Q ss_pred CcccCCccccceeeeeccCC
Q 022981 203 DTEFRNPWARGRITVKRYDR 222 (289)
Q Consensus 203 ~~~~~~~~~g~~i~v~~~~~ 222 (289)
+..+. |+.|.|+.+..
T Consensus 66 g~~~~----g~~l~V~~a~~ 81 (94)
T 2e5g_A 66 QHSLG----GHRLRVRPREQ 81 (94)
T ss_dssp CCEET----TEECCCBCSCC
T ss_pred CeEEC----CEEEEEEECCc
Confidence 99998 99999987754
No 351
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.46 E-value=1.1e-12 Score=98.51 Aligned_cols=77 Identities=8% Similarity=0.029 Sum_probs=66.5
Q ss_pred cceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceE-EEEecCChHHHHHHHHhcC
Q 022981 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTY-GVVDYTNPEDMKYAIRKLD 202 (289)
Q Consensus 124 ~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~-~fv~f~~~~~a~~a~~~~~ 202 (289)
...|||+||++.+++++|.++|++||.|..+.|... . || |||+|.+.++|..|++.|+
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~--------------------Gf~aFVef~~~~~A~~A~~~Ln 83 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-N--------------------GIQAMVEFESVLCAQKAKAALN 83 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-S--------------------SEEEEEEESSHHHHHHHHHHHT
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-C--------------------CCEEEEEECCHHHHHHHHHHhC
Confidence 346789999999999999999999999999998762 2 65 9999999999999999999
Q ss_pred CcccCCccccceeeeeccCCC
Q 022981 203 DTEFRNPWARGRITVKRYDRS 223 (289)
Q Consensus 203 ~~~~~~~~~g~~i~v~~~~~~ 223 (289)
|..+.+ ..+.|+|+.++..
T Consensus 84 G~~i~g--~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 84 GADIYA--GCCTLKIEYARPT 102 (124)
T ss_dssp TCCCBT--TBSEEEEECCSCS
T ss_pred CCEecC--CCeEEEEEEecCC
Confidence 999972 1268999988743
No 352
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=3.7e-13 Score=99.96 Aligned_cols=66 Identities=15% Similarity=0.269 Sum_probs=57.4
Q ss_pred CcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhc
Q 022981 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKL 201 (289)
Q Consensus 123 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 201 (289)
..++|||+|||..+++++|+++|.+||.|. +.++.+.... .+|.++|||||+|.+.++|++|++.|
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~------------~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESK------------SYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSC------------CCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCC------------CCCCcccEEEEEECCHHHHHHHHHhh
Confidence 457999999999999999999999999999 7777665510 12688999999999999999999988
No 353
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=8.7e-13 Score=94.99 Aligned_cols=78 Identities=15% Similarity=0.195 Sum_probs=68.9
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 121 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
..+.++|||+|| .+++++|.++|.+||.|..+.|.. ++|||||+|.+.++|.+|++.
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~---------------------~~g~afV~f~~~~~a~~Ai~~ 68 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP---------------------PRNCAFVTYEKMESADQAVAE 68 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET---------------------TTTEEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC---------------------CCCEEEEEECCHHHHHHHHHH
Confidence 345679999996 899999999999999999998842 367999999999999999999
Q ss_pred cCCcccCCccccceeeeeccCCCCC
Q 022981 201 LDDTEFRNPWARGRITVKRYDRSPS 225 (289)
Q Consensus 201 ~~~~~~~~~~~g~~i~v~~~~~~~~ 225 (289)
|++..+. |+.|.|..+...+.
T Consensus 69 l~g~~~~----g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 69 LNGTQVE----SVQLKVNIARKQPM 89 (97)
T ss_dssp TTTEEET----TEEEEEECCSSCCC
T ss_pred hCCCeEC----CeEEEEEECCCCCC
Confidence 9999998 99999999876544
No 354
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.45 E-value=2.7e-13 Score=102.27 Aligned_cols=79 Identities=19% Similarity=0.220 Sum_probs=68.9
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceE-EEEecCChHHHHHHHHh
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTY-GVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~-~fv~f~~~~~a~~a~~~ 200 (289)
.....|||+||++.+++++|.++|++||.|..+.|.... +|+ |||+|.+.++|..|++.
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~--------------------~gfqAFVef~~~~~A~~Ai~~ 85 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN--------------------NQFQALLQYADPVSAQHAKLS 85 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET--------------------TEEEEEEEESCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC--------------------CCcEEEEEECCHHHHHHHHHH
Confidence 344578899999999999999999999999999987633 467 99999999999999999
Q ss_pred cCCcccCCccccceeeeeccCC
Q 022981 201 LDDTEFRNPWARGRITVKRYDR 222 (289)
Q Consensus 201 ~~~~~~~~~~~g~~i~v~~~~~ 222 (289)
|+|..+.+ +.+.|+|+.++.
T Consensus 86 LnG~~i~g--~~~~LrI~~ak~ 105 (130)
T 3zzy_A 86 LDGQNIYN--ACCTLRIDFSKL 105 (130)
T ss_dssp HTTCEEET--TEEEEEEEECSC
T ss_pred cCCCeecC--CCcEEEEEecCC
Confidence 99999982 138999999874
No 355
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.6e-13 Score=100.07 Aligned_cols=82 Identities=18% Similarity=0.209 Sum_probs=68.9
Q ss_pred CCcceeee--cCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHH
Q 022981 122 HSEYRVIV--RGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIR 199 (289)
Q Consensus 122 ~~~~~l~v--~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 199 (289)
.+..+||| +||++.+++++|+++|++||.|..+.|..+ +|||||+|.+.++|.+|++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~---------------------rgfaFV~f~~~~~A~~Ai~ 81 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN---------------------KPYSFARYRTTEESKRAYV 81 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT---------------------CSCEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---------------------CCEEEEEECCHHHHHHHHH
Confidence 45678999 779999999999999999999999887531 5799999999999999999
Q ss_pred hcCCccc-CCccccceeeeeccCCCC
Q 022981 200 KLDDTEF-RNPWARGRITVKRYDRSP 224 (289)
Q Consensus 200 ~~~~~~~-~~~~~g~~i~v~~~~~~~ 224 (289)
.|||..+ ..-..+.+|.|..+...+
T Consensus 82 ~lnG~~~~~~lg~g~~l~v~~a~~~p 107 (114)
T 2cq2_A 82 TLNGKEVVDDLGQKITLYLNFVEKVQ 107 (114)
T ss_dssp HTTTCEEECTTSCEEECEEEEESCCC
T ss_pred HhCCCEEccccCCCcEEEEEecccCc
Confidence 9999987 211128899999887543
No 356
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.44 E-value=1.3e-13 Score=100.34 Aligned_cols=78 Identities=17% Similarity=0.250 Sum_probs=69.6
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhc
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKL 201 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 201 (289)
...++|||+|||..+++++|.++|..||.|..+.|..+.. |.++|||||+|.+.++|.+|++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~----------------g~~~g~afV~f~~~~~a~~Ai~-- 68 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRT----------------GVSKGYGFVSFYNDVDVQKIVE-- 68 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT----------------SCEEEEEEEEESSCCCHHHHTT--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCC----------------CCccceEEEEECCHHHHHHHHh--
Confidence 4567999999999999999999999999999999998764 3778999999999999999998
Q ss_pred CCcccCCccccceeeeeccC
Q 022981 202 DDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 202 ~~~~~~~~~~g~~i~v~~~~ 221 (289)
++..+. |..|.|..+.
T Consensus 69 ~~~~~~----g~~l~v~~a~ 84 (102)
T 2xs2_A 69 SQINFH----GKKLKLGPAI 84 (102)
T ss_dssp CCCEET----TEECEEEEEE
T ss_pred CCCeEC----CEEEEEEECC
Confidence 777777 8888887765
No 357
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.42 E-value=7.8e-13 Score=96.59 Aligned_cols=82 Identities=13% Similarity=0.084 Sum_probs=70.8
Q ss_pred CCcceeeecCCCC-----CCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHH
Q 022981 122 HSEYRVIVRGLPS-----SASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKY 196 (289)
Q Consensus 122 ~~~~~l~v~nlp~-----~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~ 196 (289)
.+..+|+|.|+.. +-++++|+++|++||.|..+.|+.++.. ++.++|||||+|.+.++|.+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~--------------~~~~~G~~FV~f~~~~~A~~ 71 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGA--------------PDDEAVRIFLEFERVESAIK 71 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSC--------------CTTTSEEEEEEESSHHHHHH
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCC--------------CCCCcEEEEEEECCHHHHHH
Confidence 3556999999963 2368999999999999999999987652 34679999999999999999
Q ss_pred HHHhcCCcccCCccccceeeeeccC
Q 022981 197 AIRKLDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 197 a~~~~~~~~~~~~~~g~~i~v~~~~ 221 (289)
|++.|||..+. |+.|.|..+.
T Consensus 72 Ai~~lnG~~~~----Gr~i~v~~a~ 92 (105)
T 2pe8_A 72 AVVDLNGRYFG----GRVVKACFYN 92 (105)
T ss_dssp HHHHHTTCEET----TEECEEEECC
T ss_pred HHHHHCCCEEC----CcEEEEEEcC
Confidence 99999999999 9999999875
No 358
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.41 E-value=3.5e-13 Score=95.30 Aligned_cols=74 Identities=20% Similarity=0.336 Sum_probs=67.2
Q ss_pred CcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcC
Q 022981 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLD 202 (289)
Q Consensus 123 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~ 202 (289)
..++|||+|||..+++++|+++|.+| .|..+.+. . ++|||||+|.+.++|.+|++.|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~-------------------~~g~afV~f~~~~~a~~Ai~~l~ 61 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--R-------------------NKRTAFVTLLNGEQAQNAIQMFH 61 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--G-------------------GGTEEEECCSCHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--C-------------------CCcEEEEEECCHHHHHHHHHHhC
Confidence 34689999999999999999999999 99998884 1 36899999999999999999999
Q ss_pred CcccCCccccceeeeeccCC
Q 022981 203 DTEFRNPWARGRITVKRYDR 222 (289)
Q Consensus 203 ~~~~~~~~~g~~i~v~~~~~ 222 (289)
+..+. |+.|.|+.+..
T Consensus 62 g~~~~----g~~l~V~~a~~ 77 (88)
T 1wg1_A 62 QYSFR----GKDLIVQLQPT 77 (88)
T ss_dssp TEEET----TEEEEEEECCC
T ss_pred CCeEC----CcEEEEEEcCC
Confidence 99998 99999998864
No 359
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=1e-12 Score=92.33 Aligned_cols=68 Identities=18% Similarity=0.307 Sum_probs=61.1
Q ss_pred eeeecCCCCCCCHHH----HHHHHHhc-CCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 126 RVIVRGLPSSASWQD----LKDHMRKA-GDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 126 ~l~v~nlp~~~~~~~----l~~~f~~~-g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
.|||.|||+.+++++ |.++|++| |.|..+ . .|+|||.|.+.++|.+|++.
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------t-------------------gG~AfV~F~~~esA~~A~~~ 65 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------T-------------------GCSAILRFINQDSAERAQKR 65 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------C-------------------TTCEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------e-------------------cCEEEEEECCHHHHHHHHHH
Confidence 499999999999987 56899999 599776 1 27899999999999999999
Q ss_pred cCCcccCCccccceeeeeccCC
Q 022981 201 LDDTEFRNPWARGRITVKRYDR 222 (289)
Q Consensus 201 ~~~~~~~~~~~g~~i~v~~~~~ 222 (289)
|+|..+. |++|+|..+..
T Consensus 66 l~G~~l~----gr~i~v~~A~~ 83 (96)
T 2diu_A 66 MENEDVF----GNRIIVSFTPK 83 (96)
T ss_dssp HTTCCSS----SSCCEEESSCC
T ss_pred hcCCccC----CceEEEEecCC
Confidence 9999999 99999999974
No 360
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.40 E-value=2.8e-12 Score=104.17 Aligned_cols=77 Identities=17% Similarity=0.261 Sum_probs=68.3
Q ss_pred cceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCC
Q 022981 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDD 203 (289)
Q Consensus 124 ~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~ 203 (289)
.++|||+|||..+++++|.++|++||.|..+.|+.+..+ .++|||||+|++.++|.+|+..++
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~----------------~~kG~aFVeF~~~e~A~~A~~~~~- 171 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHK----------------AFKGSIFVVFDSIESAKKFVETPG- 171 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTC----------------CEEEEEEEEESSHHHHHHHHHCTT-
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCC----------------CcccEEEEEECCHHHHHHHHHhCC-
Confidence 468999999999999999999999999999999987653 679999999999999999998664
Q ss_pred cccCCccccceeeeeccC
Q 022981 204 TEFRNPWARGRITVKRYD 221 (289)
Q Consensus 204 ~~~~~~~~g~~i~v~~~~ 221 (289)
..+. |+.|.|....
T Consensus 172 ~~~~----Gr~l~V~~~~ 185 (193)
T 2voo_A 172 QKYK----ETDLLILFKD 185 (193)
T ss_dssp CEET----TEECEEEETT
T ss_pred CeEC----CEEEEEEEhH
Confidence 4666 8999998764
No 361
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.39 E-value=1.1e-12 Score=92.40 Aligned_cols=72 Identities=17% Similarity=0.384 Sum_probs=65.0
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHhc----C-------CeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCC
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRKA----G-------DVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTN 190 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~~----g-------~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~ 190 (289)
.+..+|||+|||..+++++|.++|.+| | .|..+.+..+ +|||||+|.+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~---------------------kg~afV~f~~ 62 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---------------------KNFAFLEFRS 62 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS---------------------SSEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC---------------------CcEEEEEcCC
Confidence 356799999999999999999999999 8 8988888753 4799999999
Q ss_pred hHHHHHHHHhcCCcccCCccccceeeeec
Q 022981 191 PEDMKYAIRKLDDTEFRNPWARGRITVKR 219 (289)
Q Consensus 191 ~~~a~~a~~~~~~~~~~~~~~g~~i~v~~ 219 (289)
.++|.+|+ .|++..+. |+.|.|+.
T Consensus 63 ~~~a~~A~-~l~g~~~~----g~~l~V~r 86 (87)
T 2hzc_A 63 VDETTQAM-AFDGIIFQ----GQSLKIRR 86 (87)
T ss_dssp HHHHHHHG-GGTTCEET----TEECEEEC
T ss_pred HHHHHHHH-hcCCCEEC----CeEEEEeC
Confidence 99999999 99999998 89998874
No 362
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.37 E-value=2e-12 Score=97.04 Aligned_cols=77 Identities=16% Similarity=0.202 Sum_probs=68.3
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhc
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKL 201 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 201 (289)
.+.++|||+|| .+++++|.++|.+||.|..+.+.. ++|||||+|.+.++|.+|++.|
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~---------------------~kg~aFV~f~~~~~A~~Ai~~l 93 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP---------------------PRNCAFVTYEKMESADQAVAEL 93 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET---------------------TTTEEEEECSSHHHHHHHHHHH
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC---------------------CCCEEEEEECCHHHHHHHHHHh
Confidence 45779999996 699999999999999999998852 2589999999999999999999
Q ss_pred CCcccCCccccceeeeeccCCCCC
Q 022981 202 DDTEFRNPWARGRITVKRYDRSPS 225 (289)
Q Consensus 202 ~~~~~~~~~~g~~i~v~~~~~~~~ 225 (289)
++..+. |+.|.|..+...+.
T Consensus 94 ng~~~~----g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 94 NGTQVE----SVQLKVNIARKQPM 113 (121)
T ss_dssp TTCBCS----SCBCEEEECCSSCC
T ss_pred CCCEEC----CeEEEEEEeCCCCC
Confidence 999998 99999999875443
No 363
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.37 E-value=9.6e-13 Score=93.24 Aligned_cols=76 Identities=11% Similarity=0.175 Sum_probs=60.9
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 121 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
..+.++|||+|||+++++++|+++|++||.|..+.|+.+ ++|||||+|.+.++|.+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~--------------------srGfaFV~F~~~~~A~~---- 63 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP--------------------FRAFAFVTFADDKVAQS---- 63 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS--------------------CCSEEEEEESCHHHHHH----
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC--------------------CCCEEEEEECCHHHHHH----
Confidence 456679999999999999999999999999999999874 25899999999999983
Q ss_pred cCCcccCCccccceeeeeccCC
Q 022981 201 LDDTEFRNPWARGRITVKRYDR 222 (289)
Q Consensus 201 ~~~~~~~~~~~g~~i~v~~~~~ 222 (289)
+++..+. ..++.|.|..+..
T Consensus 64 ~~~~~~~--~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 64 LCGEDLI--IKGISVHISNAEP 83 (89)
T ss_dssp HTTCEEE--ETTEEEEEEECC-
T ss_pred HcCCCcc--cCCEEEEEEEcCC
Confidence 4555433 2278888888764
No 364
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=9.3e-13 Score=93.03 Aligned_cols=77 Identities=9% Similarity=0.131 Sum_probs=62.5
Q ss_pred CcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcC
Q 022981 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLD 202 (289)
Q Consensus 123 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~ 202 (289)
..++|||+|||..+++++|.++|.+||.|..+.|..+. +|||||+|.+.++|++| +
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--------------------~g~afV~f~~~~~a~~~----~ 59 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPF--------------------RAFAFVTFADDQIAQSL----C 59 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSC--------------------CSCCEEECSCHHHHHHT----T
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCC--------------------CCEEEEEECCHHHHHHH----h
Confidence 45699999999999999999999999999999998752 58999999999999754 4
Q ss_pred CcccCCccccceeeeeccCCCCC
Q 022981 203 DTEFRNPWARGRITVKRYDRSPS 225 (289)
Q Consensus 203 ~~~~~~~~~g~~i~v~~~~~~~~ 225 (289)
+..+. ..+..|.|..+.....
T Consensus 60 ~~~~~--~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 60 GEDLI--IKGISVHISNAEPKHN 80 (88)
T ss_dssp TCEEE--ETTEEEEEECCCCCCC
T ss_pred cCCce--eCCEEEEEEecCCCCC
Confidence 44332 2288999988865443
No 365
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=1.1e-11 Score=91.61 Aligned_cols=80 Identities=24% Similarity=0.364 Sum_probs=67.3
Q ss_pred CCcceeeecCCCCCCC-----------HHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCC
Q 022981 122 HSEYRVIVRGLPSSAS-----------WQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTN 190 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~-----------~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~ 190 (289)
.+..+|+|.||..... +++|.++|.+||.|..+.|. +. .++|||||+|.+
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~-~~------------------~~~G~afV~f~~ 73 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF-DR------------------HPDGVASVSFRD 73 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEE-TT------------------CTTCEEEEECSC
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEe-cC------------------CCCEEEEEEECC
Confidence 4567999999954432 57999999999999999763 22 247999999999
Q ss_pred hHHHHHHHHhcCCcccCCccccceeeeeccCCCC
Q 022981 191 PEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSP 224 (289)
Q Consensus 191 ~~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~~~~ 224 (289)
.++|.+|+..|+|..+. |+.|.|..+....
T Consensus 74 ~~~A~~Ai~~lng~~~~----gr~l~v~~a~~~~ 103 (112)
T 2dit_A 74 PEEADYCIQTLDGRWFG----GRQITAQAWDGTT 103 (112)
T ss_dssp HHHHHHHHHHSTTCEET----TEECEEEECCSCC
T ss_pred HHHHHHHHHHcCCCEEC----CcEEEEEEeCCCC
Confidence 99999999999999998 9999999987543
No 366
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=1.1e-11 Score=91.84 Aligned_cols=76 Identities=14% Similarity=0.153 Sum_probs=68.4
Q ss_pred CCCCeEEEcCCCCC-ccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEcc-HHHHHHHHHHh--CCceeCCceEEEEE
Q 022981 4 RFSRTIYVGNLPSD-IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFEN-ARDAEDAIRGR--DGYNFDGCRLRVEL 79 (289)
Q Consensus 4 ~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~-~~~A~~A~~~l--~g~~~~g~~l~v~~ 79 (289)
.+...|||+||+.+ ++.++|+++|++||+|..|.+..+. ..|||.|.+ +++|..|+..| ++..|.|..+.++.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~---~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA---KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC---SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC---CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 57889999999999 9999999999999999999998763 379999999 89999999999 47889999999987
Q ss_pred ccC
Q 022981 80 AHG 82 (289)
Q Consensus 80 ~~~ 82 (289)
...
T Consensus 93 L~G 95 (121)
T 1owx_A 93 LEG 95 (121)
T ss_dssp CCH
T ss_pred CCC
Confidence 753
No 367
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.29 E-value=5.1e-12 Score=92.24 Aligned_cols=82 Identities=22% Similarity=0.233 Sum_probs=68.9
Q ss_pred CcceeeecCC--CCCCC--------HHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChH
Q 022981 123 SEYRVIVRGL--PSSAS--------WQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPE 192 (289)
Q Consensus 123 ~~~~l~v~nl--p~~~~--------~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~ 192 (289)
+...|.+.|+ |..+. +++|+++|++||.|..+.|+.+..+. ++.++|+|||+|.+.+
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~-------------~~~~~G~~fV~f~~~~ 70 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGV-------------EVPGCGKIFVEFTSVF 70 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTB-------------CCTTTTEEEEEESSHH
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCC-------------CcCCcEEEEEEECCHH
Confidence 4568899998 43443 36899999999999999999876531 2357899999999999
Q ss_pred HHHHHHHhcCCcccCCccccceeeeeccC
Q 022981 193 DMKYAIRKLDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 193 ~a~~a~~~~~~~~~~~~~~g~~i~v~~~~ 221 (289)
+|.+|++.|||+.+. |+.|.+..+.
T Consensus 71 ~A~~Ai~~lnG~~f~----GR~i~v~~~~ 95 (105)
T 3v4m_A 71 DCQKAMQGLTGRKFA----NRVVVTKYCD 95 (105)
T ss_dssp HHHHHHHHHTTCEET----TEECEEEEEC
T ss_pred HHHHHHHHhCCCEeC----CCEEEEEEeC
Confidence 999999999999999 9999998764
No 368
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=3.2e-11 Score=83.98 Aligned_cols=75 Identities=17% Similarity=0.249 Sum_probs=64.3
Q ss_pred CCCCCeEEEcCCCC----CccH----HHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCce
Q 022981 3 GRFSRTIYVGNLPS----DIRE----YEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR 74 (289)
Q Consensus 3 ~~~~~~l~V~nLp~----~~t~----~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 74 (289)
+.|.-||+|.-++. +.-+ .+|.+.|.+||.|..+++..+ .+||+|.+.++|.+|+. |||..+.|+.
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-----~~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-----KMWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-----SEEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-----CEEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 37888999977662 3333 678999999999999999864 48999999999999999 9999999999
Q ss_pred EEEEEccCC
Q 022981 75 LRVELAHGG 83 (289)
Q Consensus 75 l~v~~~~~~ 83 (289)
|+|.++.+.
T Consensus 78 LkV~lkt~d 86 (91)
T 2dnr_A 78 ITIALKSPS 86 (91)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999998754
No 369
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.24 E-value=1.1e-11 Score=103.22 Aligned_cols=84 Identities=14% Similarity=0.287 Sum_probs=69.8
Q ss_pred CCCcceeeecCCCCCC---------CHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCCh
Q 022981 121 RHSEYRVIVRGLPSSA---------SWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNP 191 (289)
Q Consensus 121 ~~~~~~l~v~nlp~~~---------~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~ 191 (289)
.....+|||+||+..+ ++++|.++|.+||.|..+.|+.. +|||||+|.+.
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~---------------------kG~AFV~F~~~ 189 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES---------------------KNCGFVKFKYQ 189 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG---------------------GTEEEEEESSH
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC---------------------CCEEEEEeCCH
Confidence 3456799999999998 79999999999999999998852 57999999999
Q ss_pred HHHHHHHHhcCCcccC----Ccc----ccceeeeeccCCCCC
Q 022981 192 EDMKYAIRKLDDTEFR----NPW----ARGRITVKRYDRSPS 225 (289)
Q Consensus 192 ~~a~~a~~~~~~~~~~----~~~----~g~~i~v~~~~~~~~ 225 (289)
++|+.|++.|++..+. ..| .|+.|.|+.+...+.
T Consensus 190 ~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 190 ANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp HHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred HHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCCC
Confidence 9999999999999991 111 389999999975543
No 370
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.21 E-value=5e-12 Score=92.15 Aligned_cols=72 Identities=22% Similarity=0.222 Sum_probs=60.4
Q ss_pred ecCCCCCCCHHHHHHHH------------HhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHH
Q 022981 129 VRGLPSSASWQDLKDHM------------RKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKY 196 (289)
Q Consensus 129 v~nlp~~~~~~~l~~~f------------~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~ 196 (289)
+.+||..+++++|+++| ++||.|..+.|+.+..+ .++|||||+|.+.++|.+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~----------------~~~G~~fV~f~~~~~A~~ 83 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGD----------------HLVGNVYVKFRREEDAEK 83 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSS----------------SSEEEEEEEESCHHHHHH
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCC----------------CccEEEEEEECCHHHHHH
Confidence 45566666776666555 99999999999986553 679999999999999999
Q ss_pred HHHhcCCcccCCccccceeeeecc
Q 022981 197 AIRKLDDTEFRNPWARGRITVKRY 220 (289)
Q Consensus 197 a~~~~~~~~~~~~~~g~~i~v~~~ 220 (289)
|+..|||..+. |+.|.|+.+
T Consensus 84 A~~~lng~~~~----Gr~i~v~~s 103 (104)
T 1jmt_A 84 AVIDLNNRWFN----GQPIHAELS 103 (104)
T ss_dssp HHHHHTTCEET----TEECCEEEC
T ss_pred HHHHHCCCEEC----CEEEEEEEc
Confidence 99999999999 999998764
No 371
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.18 E-value=4.1e-11 Score=89.21 Aligned_cols=84 Identities=14% Similarity=0.148 Sum_probs=69.7
Q ss_pred CcceeeecCCC--CCC---CHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHH
Q 022981 123 SEYRVIVRGLP--SSA---SWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYA 197 (289)
Q Consensus 123 ~~~~l~v~nlp--~~~---~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 197 (289)
+..+|++.|+- .++ -+++|+++|++||.|..+.|+.+..+. ..++.++|++||+|.+.++|.+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~-----------~~~~~~~G~~FV~F~~~e~A~~A 87 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGE-----------EEDAEIIVKIFVEFSIASETHKA 87 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESS-----------STTCEEEEEEEEEESSHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCc-----------ccCCcceEEEEEEECCHHHHHHH
Confidence 56689999983 222 368999999999999999999875420 01456789999999999999999
Q ss_pred HHhcCCcccCCccccceeeeeccC
Q 022981 198 IRKLDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 198 ~~~~~~~~~~~~~~g~~i~v~~~~ 221 (289)
++.|||+.|. |+.|.+..+.
T Consensus 88 i~~LnGr~f~----GR~i~v~~~~ 107 (118)
T 3ue2_A 88 IQALNGRWFA----GRKVVAEVYD 107 (118)
T ss_dssp HHHHTTCEET----TEECEEEEEC
T ss_pred HHHHCCCEEC----CcEEEEEEcC
Confidence 9999999999 9999998765
No 372
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=7.2e-10 Score=79.86 Aligned_cols=65 Identities=15% Similarity=0.158 Sum_probs=56.0
Q ss_pred CCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccc
Q 022981 134 SSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 213 (289)
Q Consensus 134 ~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~ 213 (289)
..+++++|+++|.+||.|..+.|+. .++|||||+|++.++|..|++.+++. . ++
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~--------------------~~rGfaFVeF~~~~~A~~Ai~~~~~~--~----g~ 80 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS--------------------KKPGTAVVEFATVKAAELAVQNEVGL--V----DN 80 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES--------------------SSSSEEEEEESCHHHHHHHHHTCCBC--S----SS
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc--------------------CCCCEEEEEECCHHHHHHHHHhcCCC--C----CC
Confidence 5689999999999999999999984 34789999999999999999986653 3 89
Q ss_pred eeeeeccCCCC
Q 022981 214 RITVKRYDRSP 224 (289)
Q Consensus 214 ~i~v~~~~~~~ 224 (289)
+|+|+.+...+
T Consensus 81 ~l~V~~a~~~~ 91 (100)
T 2d9o_A 81 PLKISWLEGQP 91 (100)
T ss_dssp BCEEECSSCCC
T ss_pred eEEEEEccCCC
Confidence 99999887554
No 373
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.12 E-value=2.2e-10 Score=84.62 Aligned_cols=77 Identities=16% Similarity=0.086 Sum_probs=64.1
Q ss_pred CCcceeeecCCCCCCC----------HHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCCh
Q 022981 122 HSEYRVIVRGLPSSAS----------WQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNP 191 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~----------~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~ 191 (289)
.+..+|.+.|+-.... +++|.++|++||.|..+.|.++.. +|+|||+|.+.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~-------------------~G~~fV~f~~~ 65 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSA-------------------QGNVYVKCPSI 65 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCT-------------------TCCEEEECSSH
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCC-------------------cEEEEEEECCH
Confidence 3456888888832221 358999999999999999876532 79999999999
Q ss_pred HHHHHHHHhcCCcccCCccccceeeeeccC
Q 022981 192 EDMKYAIRKLDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 192 ~~a~~a~~~~~~~~~~~~~~g~~i~v~~~~ 221 (289)
++|.+|++.|||..|. |+.|.|..+.
T Consensus 66 e~A~~Ai~~lnG~~f~----GR~i~v~~~~ 91 (114)
T 3s6e_A 66 AAAIAAVNALHGRWFA----GKMITAAYVP 91 (114)
T ss_dssp HHHHHHHHHHTTCEET----TEECEEEEEC
T ss_pred HHHHHHHHHhCCCEEC----CEEEEEEEEc
Confidence 9999999999999999 9999999874
No 374
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=1.5e-10 Score=80.88 Aligned_cols=73 Identities=18% Similarity=0.271 Sum_probs=62.6
Q ss_pred CCCCCeEEEcCCCCC-----ccH----HHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCc
Q 022981 3 GRFSRTIYVGNLPSD-----IRE----YEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC 73 (289)
Q Consensus 3 ~~~~~~l~V~nLp~~-----~t~----~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 73 (289)
+.|.-||+|.-++.. .-+ .+|.+.|.+||.|..+++..+ -+||+|.+.++|.+||. |||..+.|+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-----~~fVtF~d~~sAl~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-----QMLVTFADSHSALSVLD-VDGMKVKGR 85 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-----EEEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-----cEEEEEcChHHHHHHHh-cCCeeeCCe
Confidence 378899999877643 222 568999999999999999866 39999999999999999 999999999
Q ss_pred eEEEEEcc
Q 022981 74 RLRVELAH 81 (289)
Q Consensus 74 ~l~v~~~~ 81 (289)
.|+|.+..
T Consensus 86 ~L~V~~k~ 93 (95)
T 1ufw_A 86 AVKISGPS 93 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEeccC
Confidence 99999754
No 375
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.04 E-value=2.9e-10 Score=99.70 Aligned_cols=79 Identities=18% Similarity=0.176 Sum_probs=63.8
Q ss_pred CCCCcceeeecC--CCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHH
Q 022981 120 SRHSEYRVIVRG--LPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYA 197 (289)
Q Consensus 120 ~~~~~~~l~v~n--lp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 197 (289)
...+..+|||+| |+..+++++|.++|++||.|..+.+.. . +|||||+|.+.++|++|
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~-------------------kgfaFV~f~~~~~A~~A 72 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--N-------------------KPYSFARYRTTEESKRA 72 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--T-------------------CSEEEEEESSHHHHHHH
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--C-------------------CCEEEEEECCHHHHHHH
Confidence 345677999999 578999999999999999999877653 2 58999999999999999
Q ss_pred HHhcCCcccCCccccc--eeeeecc
Q 022981 198 IRKLDDTEFRNPWARG--RITVKRY 220 (289)
Q Consensus 198 ~~~~~~~~~~~~~~g~--~i~v~~~ 220 (289)
++.|||..+... .|. .|.+...
T Consensus 73 i~~lnG~~~~~~-~g~~~~ly~~~~ 96 (345)
T 3tht_A 73 YVTLNGKEVVDD-LGQKITLYLNFV 96 (345)
T ss_dssp HHHTTTCEEECT-TSCEEECEEEEC
T ss_pred HHHhCCCccccc-cCCceEEEEEEe
Confidence 999999988411 123 4555554
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=2.9e-09 Score=78.90 Aligned_cols=76 Identities=11% Similarity=0.223 Sum_probs=65.0
Q ss_pred CCCCCcceeeecCCCCC-CCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCC-hHHHHH
Q 022981 119 ISRHSEYRVIVRGLPSS-ASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTN-PEDMKY 196 (289)
Q Consensus 119 ~~~~~~~~l~v~nlp~~-~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~-~~~a~~ 196 (289)
....+++.|+|+||+.. ++.++|+++|++||+|.+|++..+.. .|||.|.+ .++|..
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~---------------------tgfVrf~~~~~~A~~ 71 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK---------------------EGIILFKEKAKEALG 71 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS---------------------EEEEEESSCHHHHHH
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC---------------------EEEEEECCChHHHHH
Confidence 44567889999999999 99999999999999999999988766 59999999 899999
Q ss_pred HHHhcC--CcccCCccccceeeeec
Q 022981 197 AIRKLD--DTEFRNPWARGRITVKR 219 (289)
Q Consensus 197 a~~~~~--~~~~~~~~~g~~i~v~~ 219 (289)
|+..++ +..+. +..++++.
T Consensus 72 av~~ln~~~~~i~----g~~~~~ev 92 (121)
T 1owx_A 72 KAKDANNGNLQLR----NKEVTWEV 92 (121)
T ss_dssp HHHHTTTSCBCTT----SSSEEEEE
T ss_pred HHHHhhcCCcEEe----CcEEEEEE
Confidence 999995 55555 56666654
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.91 E-value=2.6e-09 Score=88.43 Aligned_cols=76 Identities=25% Similarity=0.293 Sum_probs=63.3
Q ss_pred CCeEEEcCCC-----CCccHHHHHHHHhhcCCeeEEEEcc-------CCCCCceEEEEEccHHHHHHHHHHhCCceeCCc
Q 022981 6 SRTIYVGNLP-----SDIREYEVEDLFYKYGRILDIELKI-------PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC 73 (289)
Q Consensus 6 ~~~l~V~nLp-----~~~t~~~L~~~F~~~G~i~~v~~~~-------~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 73 (289)
...+.+.|+- .+-.+++|.+.|++||.|..+.|.. +++++|++||+|.+.++|++|+..|||..|.|+
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 4445555542 2356789999999999999999953 237789999999999999999999999999999
Q ss_pred eEEEEEcc
Q 022981 74 RLRVELAH 81 (289)
Q Consensus 74 ~l~v~~~~ 81 (289)
.|.|.+..
T Consensus 204 ~i~~~~~~ 211 (222)
T 3dxb_A 204 KVVAEVYD 211 (222)
T ss_dssp BCEEEECC
T ss_pred EEEEEEcC
Confidence 99999975
No 378
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.80 E-value=3.6e-08 Score=70.23 Aligned_cols=73 Identities=15% Similarity=0.118 Sum_probs=67.8
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhc-----CCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEE
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKY-----GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~-----G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 79 (289)
..++|-|-|||..+++..|+.|+..+ |.|..|.+..+ -+=|+|+|.+...|.+|.-.|+|..|.|+.|+|.-
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD---H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD---FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT---TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC---CCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 47899999999999999999999999 99999999876 57899999999999999988999999999999975
Q ss_pred c
Q 022981 80 A 80 (289)
Q Consensus 80 ~ 80 (289)
.
T Consensus 97 v 97 (117)
T 2l9w_A 97 I 97 (117)
T ss_dssp H
T ss_pred H
Confidence 4
No 379
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.61 E-value=6.3e-08 Score=67.33 Aligned_cols=70 Identities=17% Similarity=0.128 Sum_probs=57.7
Q ss_pred ceeeecCCCC----CCCH----HHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHH
Q 022981 125 YRVIVRGLPS----SASW----QDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKY 196 (289)
Q Consensus 125 ~~l~v~nlp~----~~~~----~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~ 196 (289)
.+|+|.-.+. ..-+ .+|.+.|.+||.|..+++..+ .+||+|.+.++|.+
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-----------------------~~fVtF~d~~sAla 64 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-----------------------KMWVTFLEGSSALN 64 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-----------------------SEEEEESSHHHHHH
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-----------------------CEEEEECChHHHHH
Confidence 3777766552 2323 579999999999999988873 48999999999999
Q ss_pred HHHhcCCcccCCccccceeeeeccCC
Q 022981 197 AIRKLDDTEFRNPWARGRITVKRYDR 222 (289)
Q Consensus 197 a~~~~~~~~~~~~~~g~~i~v~~~~~ 222 (289)
|++ |+|..+. |+.|+|+.+..
T Consensus 65 Ai~-mnG~~v~----Gr~LkV~lkt~ 85 (91)
T 2dnr_A 65 VLS-LNGKELL----NRTITIALKSP 85 (91)
T ss_dssp GGG-GTTCEET----TEEEEEEECCC
T ss_pred HHh-cCCeEeC----CeEEEEEeCCC
Confidence 998 9999999 99999998753
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.58 E-value=1.1e-07 Score=78.64 Aligned_cols=72 Identities=15% Similarity=0.132 Sum_probs=62.0
Q ss_pred CCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCcccCCccccce
Q 022981 135 SASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 214 (289)
Q Consensus 135 ~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~g~~ 214 (289)
.-.+++|.+.|.+||.|..+.|..+..+. ..++.++|++||+|.+.++|.+|++.|+|+.+. |+.
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~-----------~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~----gr~ 204 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGE-----------EEDAEIIVKIFVEFSIASETHKAIQALNGRWFA----GRK 204 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCS-----------STTCCEEEEEEEEESSHHHHHHHHHHHTTCBSS----SSB
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCc-----------ccCcCceeEEEEEECCHHHHHHHHHHhcCceEC----CeE
Confidence 34567999999999999999998765531 226688999999999999999999999999999 999
Q ss_pred eeeeccC
Q 022981 215 ITVKRYD 221 (289)
Q Consensus 215 i~v~~~~ 221 (289)
|.+....
T Consensus 205 i~~~~~~ 211 (222)
T 3dxb_A 205 VVAEVYD 211 (222)
T ss_dssp CEEEECC
T ss_pred EEEEEcC
Confidence 9998865
No 381
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=1.2e-06 Score=61.89 Aligned_cols=74 Identities=19% Similarity=0.238 Sum_probs=62.8
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhh-----cCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEE
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYK-----YGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~-----~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 78 (289)
.-..+|.|.|||+.+.++.|.-+|+. =|+|..+.... +-|+|+|.+.+.|++.|+ -....|.+..|.|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-----~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-----CGGVLTFREPADAERVLA-QADHELHGAQLSLR 79 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-----TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-----CcEEEEEcChHHHHHHhc-CCcceecCeEEEEE
Confidence 45678999999999999999999986 25999998753 789999999999999998 55788899999998
Q ss_pred EccCC
Q 022981 79 LAHGG 83 (289)
Q Consensus 79 ~~~~~ 83 (289)
...+.
T Consensus 80 P~~~~ 84 (104)
T 2dhx_A 80 PAPPR 84 (104)
T ss_dssp ECCCC
T ss_pred cCCCC
Confidence 75543
No 382
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.40 E-value=7.7e-07 Score=62.15 Aligned_cols=69 Identities=9% Similarity=0.191 Sum_probs=57.3
Q ss_pred cceeeecCCCCC-----CCH----HHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHH
Q 022981 124 EYRVIVRGLPSS-----ASW----QDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDM 194 (289)
Q Consensus 124 ~~~l~v~nlp~~-----~~~----~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a 194 (289)
..+|+|.-++.. +-+ .+|.+.|..||.|..+++..+ -+||+|.+.++|
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-----------------------~~fVtF~d~~sA 71 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-----------------------QMLVTFADSHSA 71 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-----------------------EEEEECSCSHHH
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-----------------------cEEEEEcChHHH
Confidence 348888877643 222 469999999999999988874 389999999999
Q ss_pred HHHHHhcCCcccCCccccceeeeecc
Q 022981 195 KYAIRKLDDTEFRNPWARGRITVKRY 220 (289)
Q Consensus 195 ~~a~~~~~~~~~~~~~~g~~i~v~~~ 220 (289)
.+|++ |+|.++. |+.|+|..-
T Consensus 72 l~AI~-ldG~~v~----Gr~L~V~~k 92 (95)
T 1ufw_A 72 LSVLD-VDGMKVK----GRAVKISGP 92 (95)
T ss_dssp HHHHH-GGGSEET----TEEEEEECC
T ss_pred HHHHh-cCCeeeC----CeEEEEecc
Confidence 99998 9999999 999999764
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.23 E-value=1.3e-05 Score=56.98 Aligned_cols=77 Identities=18% Similarity=0.130 Sum_probs=64.8
Q ss_pred CCCCeEEEcCCCCCc-c----HHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEE
Q 022981 4 RFSRTIYVGNLPSDI-R----EYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~-t----~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 78 (289)
.-.++|+|.||+.++ . .+.++++|..|+++..+..... -.-.-|.|.++++|.+|-..||+..|.|+.|+|-
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS---FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS---FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT---TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc---ceEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 345789999998875 2 3577899999999988877644 3367899999999999999999999999999999
Q ss_pred EccCC
Q 022981 79 LAHGG 83 (289)
Q Consensus 79 ~~~~~ 83 (289)
++.+.
T Consensus 80 Fgq~~ 84 (104)
T 1wey_A 80 FAQTL 84 (104)
T ss_dssp CCCCS
T ss_pred ecCCC
Confidence 98844
No 384
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.16 E-value=1.2e-05 Score=57.39 Aligned_cols=72 Identities=13% Similarity=0.124 Sum_probs=65.4
Q ss_pred CcceeeecCCCCCCCHHHHHHHHHhc-----CCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHH
Q 022981 123 SEYRVIVRGLPSSASWQDLKDHMRKA-----GDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYA 197 (289)
Q Consensus 123 ~~~~l~v~nlp~~~~~~~l~~~f~~~-----g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 197 (289)
...+|-+-|||..+++..|+.+...+ |.+..+.+..+..| |+|+|.+...|-+|
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~G---------------------Aivef~d~~~AgKa 78 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNG---------------------AIIIFRDSKFAAKM 78 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTE---------------------EEEECSCHHHHHHH
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCc---------------------eEEEEccchhhHHH
Confidence 45688999999999999999999999 99999988887775 99999999999999
Q ss_pred HHhcCCcccCCccccceeeeec
Q 022981 198 IRKLDDTEFRNPWARGRITVKR 219 (289)
Q Consensus 198 ~~~~~~~~~~~~~~g~~i~v~~ 219 (289)
.-.|+|.+|. |+.|++-.
T Consensus 79 sLaL~G~ef~----gr~Lr~gT 96 (117)
T 2l9w_A 79 LMILNGSQFQ----GKVIRSGT 96 (117)
T ss_dssp HHHHSSEEET----TEEEEEEC
T ss_pred HhhcCCeeec----CeEEEecC
Confidence 9999999999 89998753
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.86 E-value=7.4e-05 Score=52.09 Aligned_cols=66 Identities=17% Similarity=0.226 Sum_probs=55.6
Q ss_pred CeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC-----CCCCceEEEEEccHHHHHHHHHHhCCceeCC
Q 022981 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-----PRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (289)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~-----~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 72 (289)
+.|.|.+||+.+|++++.+.++.+..+....+... .....-|||.|.+.+++....+.++|..|.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 47899999999999999999999988776666321 2345689999999999999999999998854
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.81 E-value=5.5e-05 Score=52.81 Aligned_cols=54 Identities=17% Similarity=0.317 Sum_probs=44.4
Q ss_pred CCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHh
Q 022981 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65 (289)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l 65 (289)
.+.++| ++|+.....||.++|+.||.|.--+|- | .-|||.|.+++.|..|+..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wid-D----TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID-D----TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEE-T----TEEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEEEEEEc-C----CeEEEEecCHHHHHHHHHhc
Confidence 456677 999999999999999999955433333 2 48999999999999999966
No 387
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.73 E-value=0.00017 Score=52.60 Aligned_cols=71 Identities=18% Similarity=0.264 Sum_probs=58.9
Q ss_pred CCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCC-ceEEEEEcc
Q 022981 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG-CRLRVELAH 81 (289)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v~~~~ 81 (289)
.+-|.|-++|+.. .+.|...|++||.|.+.... .......|.|.+..+|++||. .||..|.| -.|-|.+..
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~---~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS---NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC---SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC---CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECC
Confidence 5668888999986 57888999999999998762 235799999999999999999 89999985 666677654
No 388
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.66 E-value=6.3e-05 Score=52.67 Aligned_cols=54 Identities=17% Similarity=0.257 Sum_probs=43.4
Q ss_pred CeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhC
Q 022981 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66 (289)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 66 (289)
+.++| ++|+.....||.++|+.||.|.--+ +-| .-|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~I~W-idD----TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISW-IDD----TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEEEEE-EET----TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEEEEE-EcC----CeEEEEecCHHHHHHHHHhcc
Confidence 45667 9999999999999999999442222 222 489999999999999999764
No 389
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.40 E-value=0.0004 Score=48.68 Aligned_cols=76 Identities=21% Similarity=0.239 Sum_probs=56.3
Q ss_pred CCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccC-----CCCCceEEEEEccHHHHHHHHHHhCCceeCC-----ceE
Q 022981 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-----PRPPCYCFVEFENARDAEDAIRGRDGYNFDG-----CRL 75 (289)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~-----~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~~l 75 (289)
+-.|.|..|||.+|++++.+.++.+-++....+... .....-|||.|.+.+++....+.++|..|.+ -+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 457999999999999999888887656533333221 1234589999999999999999999999844 234
Q ss_pred EEEEcc
Q 022981 76 RVELAH 81 (289)
Q Consensus 76 ~v~~~~ 81 (289)
.|++|.
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 466654
No 390
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.12 E-value=0.0015 Score=46.36 Aligned_cols=73 Identities=14% Similarity=0.085 Sum_probs=60.7
Q ss_pred cceeeecCCCCCC-C----HHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHH
Q 022981 124 EYRVIVRGLPSSA-S----WQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAI 198 (289)
Q Consensus 124 ~~~l~v~nlp~~~-~----~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~ 198 (289)
.++|+|.||+.++ . .+.++++|..|+++......+.-. -..|.|.+.++|.+|.
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR---------------------Rirv~F~~~~~A~~AR 63 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK---------------------RVRINFSNPLSAADAR 63 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT---------------------EEEEECSSTTHHHHHH
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce---------------------EEEEEeCChHHHHHHH
Confidence 3589999998755 2 257899999999888766665433 5789999999999999
Q ss_pred HhcCCcccCCccccceeeeeccC
Q 022981 199 RKLDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 199 ~~~~~~~~~~~~~g~~i~v~~~~ 221 (289)
..||+..+. |..+++-.+.
T Consensus 64 ~~Lh~~~f~----g~~~r~YFgq 82 (104)
T 1wey_A 64 LRLHKTEFL----GKEMKLYFAQ 82 (104)
T ss_dssp HTSTTSEET----TEECEEECCC
T ss_pred HHhccceec----CceeEEEecC
Confidence 999999999 8899998886
No 391
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.05 E-value=0.0039 Score=43.33 Aligned_cols=71 Identities=17% Similarity=0.305 Sum_probs=57.4
Q ss_pred ceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCCc
Q 022981 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDDT 204 (289)
Q Consensus 125 ~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 204 (289)
++|.|.+||+.++++++.+.+.....+.+.......... ......-|||.|.+.+++....+.++|.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~-------------~~~~~SRaYi~f~~~e~v~~f~~~~~g~ 68 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSL-------------YPHMYARAYINFKNQEDIILFRDRFDGY 68 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSS-------------TTCCCEEEEEEESSSHHHHHHHHHHTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCC-------------CCCcceEEEEEeCCHHHHHHHHHHhCCc
Confidence 378999999999999999999998887776665544311 0123468999999999999999999999
Q ss_pred ccCC
Q 022981 205 EFRN 208 (289)
Q Consensus 205 ~~~~ 208 (289)
.|.+
T Consensus 69 ~F~D 72 (91)
T 1uw4_A 69 VFLD 72 (91)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9874
No 392
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.97 E-value=0.0023 Score=47.30 Aligned_cols=76 Identities=22% Similarity=0.268 Sum_probs=56.4
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEE-EccC-----------C-----CCCceEEEEEccHHHHHHHHHHhCC
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIE-LKIP-----------P-----RPPCYCFVEFENARDAEDAIRGRDG 67 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~-~~~~-----------~-----~~~g~afV~f~~~~~A~~A~~~l~g 67 (289)
.+.-|.|-+.|+..+ ..|.+.|++||.|.+-. +..+ . .......|+|.+..+|.+||. .||
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 455677888876665 67778999999997721 1110 0 124577999999999999999 899
Q ss_pred ceeCCceEEEEEccC
Q 022981 68 YNFDGCRLRVELAHG 82 (289)
Q Consensus 68 ~~~~g~~l~v~~~~~ 82 (289)
..|.|..|-|.+..+
T Consensus 84 ~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 84 AVFNGVLLGVIPYTK 98 (132)
T ss_dssp CEETTEECEEEECCH
T ss_pred eEeCcEEEEEEECCH
Confidence 999999888887753
No 393
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.86 E-value=0.00058 Score=61.85 Aligned_cols=56 Identities=20% Similarity=0.231 Sum_probs=43.4
Q ss_pred CCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHH
Q 022981 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (289)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~ 63 (289)
..++|+|. .|..+++.+|.++|++||+|.++.+..+. .-||.|||.+.++++.++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--SEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--CeEEEEEeCCHHHHHHHHh
Confidence 46889996 79999999999999999999999887543 4699999999999997765
No 394
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.85 E-value=0.0088 Score=42.19 Aligned_cols=71 Identities=21% Similarity=0.280 Sum_probs=55.1
Q ss_pred CcceeeecCCCCCCCHHHHHHHHHhc-----CCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHH
Q 022981 123 SEYRVIVRGLPSSASWQDLKDHMRKA-----GDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYA 197 (289)
Q Consensus 123 ~~~~l~v~nlp~~~~~~~l~~~f~~~-----g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 197 (289)
...+|.|.|||+.+.++.|.-+|++- |.|..++... . -|+|+|.+.+.|+..
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~---------------------~AvItF~d~~va~rV 63 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--C---------------------GGVLTFREPADAERV 63 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--T---------------------EEEEEESSHHHHHHH
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--C---------------------cEEEEEcChHHHHHH
Confidence 34599999999999999999999982 6887777654 3 489999999999998
Q ss_pred HHhcCCcccCCccccceeeeeccC
Q 022981 198 IRKLDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 198 ~~~~~~~~~~~~~~g~~i~v~~~~ 221 (289)
++. ....+. +..|.|...-
T Consensus 64 L~k-~~H~L~----~~~LsV~P~~ 82 (104)
T 2dhx_A 64 LAQ-ADHELH----GAQLSLRPAP 82 (104)
T ss_dssp HTC-SCCBSS----SSBCEEEECC
T ss_pred hcC-Ccceec----CeEEEEEcCC
Confidence 874 234444 5777776554
No 395
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.39 E-value=0.022 Score=39.71 Aligned_cols=53 Identities=21% Similarity=0.305 Sum_probs=42.3
Q ss_pred eeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcC
Q 022981 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLD 202 (289)
Q Consensus 126 ~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~ 202 (289)
.++| ++|..+...||.++|..||.|.--+| .+ ..|||.|.+++.|..|+..+.
T Consensus 18 Vf~l-~FP~ewKt~DI~~lFs~fggv~I~Wi-dD----------------------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 18 VLHV-TFPKEWKTSDLYQLFSAFGNIQISWI-DD----------------------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp EEEE-ECCTTCCHHHHHHHHTTTCSCCCEEE-ET----------------------TEEEEECSCHHHHHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHhhccCCEEEEEE-cC----------------------CeEEEEecCHHHHHHHHHhcc
Confidence 4555 99999999999999999996543333 22 359999999999999998653
No 396
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.34 E-value=0.013 Score=42.59 Aligned_cols=73 Identities=19% Similarity=0.228 Sum_probs=56.9
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 121 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
.....-|.|-+.|+.. ...|..+|.+||.|...... .. .+...|.|.+..+|++|+.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~--~~-------------------~NWihI~Y~s~~~A~rAL~- 77 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS--NT-------------------GNWMHIRYQSKLQARKALS- 77 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC--SS-------------------SSEEEEEESSHHHHHHHHT-
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC--CC-------------------CCeEEEEeCCHHHHHHHHH-
Confidence 3456688899999885 67789999999999877762 12 3689999999999999998
Q ss_pred cCCcccCCccccceeeeec
Q 022981 201 LDDTEFRNPWARGRITVKR 219 (289)
Q Consensus 201 ~~~~~~~~~~~g~~i~v~~ 219 (289)
.||..+.+ +..|-|..
T Consensus 78 kNG~ii~g---~~mIGV~p 93 (119)
T 1wwh_A 78 KDGRIFGE---SIMIGVKP 93 (119)
T ss_dssp TTTCEETT---TEECEEEE
T ss_pred hCCeEecC---CEEEEEEE
Confidence 68888873 35555555
No 397
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.48 E-value=0.017 Score=40.38 Aligned_cols=84 Identities=17% Similarity=0.183 Sum_probs=55.8
Q ss_pred cceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCC
Q 022981 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDD 203 (289)
Q Consensus 124 ~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~ 203 (289)
..+|.|..||+.+|++++.+.+...-.+.+........ .. -...-..|||.|.+.+++....+.++|
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~---s~----------~~~~~SRAYI~F~~~edv~~F~~~f~g 75 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADL---SL----------YPHLYSRAYINFRNPDDILLFRDRFDG 75 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCS---SS----------CCSCCCCCEEEESCHHHHHHHHHHSTT
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCcc---CC----------CCCcceEEEEEeCCHHHHHHHHHHcCC
Confidence 45899999999999999888877654443322222111 00 011235799999999999999999999
Q ss_pred cccCCccc-cceeeeecc
Q 022981 204 TEFRNPWA-RGRITVKRY 220 (289)
Q Consensus 204 ~~~~~~~~-g~~i~v~~~ 220 (289)
..|.+..+ .-+..|+.|
T Consensus 76 ~~F~D~kg~~~~a~VE~A 93 (97)
T 2l08_A 76 YIFLDSKGLEYPAVVEFA 93 (97)
T ss_dssp EEEECTTCCEEEEEEEEC
T ss_pred cEEEeCCCCEeeeEEEec
Confidence 99874322 233345544
No 398
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.08 E-value=0.022 Score=39.79 Aligned_cols=53 Identities=23% Similarity=0.327 Sum_probs=41.9
Q ss_pred eeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcC
Q 022981 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLD 202 (289)
Q Consensus 126 ~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~ 202 (289)
.++| ++|..+.-.||.++|+.||.| .|..-.+ ..|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv---~I~WidD--------------------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI---QISWIDD--------------------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE---EEEEEET--------------------TEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE---EEEEEcC--------------------CeEEEEecCHHHHHHHHHhcc
Confidence 4455 999999999999999999943 3333223 369999999999999998764
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.97 E-value=0.041 Score=49.85 Aligned_cols=54 Identities=15% Similarity=0.184 Sum_probs=41.3
Q ss_pred ceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHH
Q 022981 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIR 199 (289)
Q Consensus 125 ~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 199 (289)
..|+|. .|..+++.+|.++|.+||+|.++.+..+.. .||.|+|.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g--------------------~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG--------------------LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS--------------------EEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC--------------------eEEEEEeCCHHHHHHHHh
Confidence 479997 799999999999999999999998887443 699999999999887754
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=92.36 E-value=0.28 Score=36.13 Aligned_cols=88 Identities=17% Similarity=0.268 Sum_probs=52.7
Q ss_pred cceeeecCCCCCCCHHHHHHHHHhcCCeeEE-EEeeCCCCCCch--hHHHhhhhhcccccceEEEEecCChHHHHHHHHh
Q 022981 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFA-EVSRDSEGWQSP--AMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRK 200 (289)
Q Consensus 124 ~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~-~i~~~~~~~~~~--~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 200 (289)
..-|.|-+.|+..+ ..|.++|++||.|..- .+..+......+ ....|+.+ ...+...|+|.+..+|.+|+.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f----~g~NWikItYds~~~A~rAL~- 80 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIF----SGNSWTKITYDNPASAVDALL- 80 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCC----EETTEEEEEBSSHHHHHHHHT-
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCcc----CCCcEEEEEcCCHHHHHHHHH-
Confidence 44677888876655 4678899999998652 111100000000 00000000 124678999999999999998
Q ss_pred cCCcccCCccccceeeeeccC
Q 022981 201 LDDTEFRNPWARGRITVKRYD 221 (289)
Q Consensus 201 ~~~~~~~~~~~g~~i~v~~~~ 221 (289)
.+|..+. |..|-|...+
T Consensus 81 ~NG~ii~----G~mIGV~Py~ 97 (132)
T 3p3d_A 81 ENGAVFN----GVLLGVIPYT 97 (132)
T ss_dssp TTTCEET----TEECEEEECC
T ss_pred hCCeEeC----cEEEEEEECC
Confidence 8898888 6666666543
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.36 E-value=0.45 Score=43.71 Aligned_cols=55 Identities=18% Similarity=0.345 Sum_probs=44.2
Q ss_pred CCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhC
Q 022981 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66 (289)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 66 (289)
.+.++|+ +|+.+...+|.++|+.||.| +|..+- ...|||.|.+.+.|..++..+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid----dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID----DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS----SSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc----CCeEEEEECCHHHHHHHHHHHH
Confidence 3467775 99999999999999999955 343322 3579999999999999999884
No 402
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=89.23 E-value=1.6 Score=28.55 Aligned_cols=68 Identities=19% Similarity=0.220 Sum_probs=45.4
Q ss_pred eEEEcCC-CCCccHHHHHHHHhhcC-----CeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEEcc
Q 022981 8 TIYVGNL-PSDIREYEVEDLFYKYG-----RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (289)
Q Consensus 8 ~l~V~nL-p~~~t~~~L~~~F~~~G-----~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 81 (289)
+|||..= -..+.+.+|..++..-+ .|-.|.+. ..|.||+-.. +.|..+++.|++..+.|+.+.|+.+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~-----d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM-----DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC-----SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe-----CCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 5677322 23478888888887654 45556665 3599999875 56788999999999999999998764
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=88.05 E-value=4.6 Score=27.35 Aligned_cols=69 Identities=19% Similarity=0.217 Sum_probs=54.8
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCceEEEEE
Q 022981 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (289)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 79 (289)
+.++-|.|-|+|..+-..++.-.....|---.|..+ -|.|.|.|.+.++...|++.|- .-....|.++.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi-----dgqamirfqnsdeqrlaiqkll--nhnnnklqiei 78 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-----DGQAMIRFQNSDEQRLAIQKLL--NHNNNKLQIEI 78 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-----SSCEEEEESSHHHHHHHHHHHE--ETTTTEEEEEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-----cCeeEEEecCChHHHHHHHHHH--hcCCCEEEEEE
Confidence 567889999999999999998888888876677665 4789999999999999998772 12345566654
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=76.54 E-value=15 Score=24.83 Aligned_cols=61 Identities=13% Similarity=0.270 Sum_probs=49.9
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhc
Q 022981 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKL 201 (289)
Q Consensus 122 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 201 (289)
...+.|.|-|+|..+-..++.-.....|---+++... |-|.+.|.+.++..-|+..|
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid-----------------------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID-----------------------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS-----------------------SCEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec-----------------------CeeEEEecCChHHHHHHHHH
Confidence 3467889999999999999888888888777776554 56899999999999999877
Q ss_pred CCcc
Q 022981 202 DDTE 205 (289)
Q Consensus 202 ~~~~ 205 (289)
-+..
T Consensus 67 lnhn 70 (129)
T 4eyt_A 67 LNHN 70 (129)
T ss_dssp EETT
T ss_pred HhcC
Confidence 5544
No 405
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=67.35 E-value=11 Score=34.58 Aligned_cols=54 Identities=20% Similarity=0.299 Sum_probs=42.3
Q ss_pred eeeecCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHHHHhcCC
Q 022981 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYAIRKLDD 203 (289)
Q Consensus 126 ~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~ 203 (289)
.++|+ +|..+...+|.+.|+.||.| .|.+-.+ ..|||.|.+.+.|..++..+..
T Consensus 442 vl~v~-f~~~~~~~~i~~~fs~fg~v---~V~widd--------------------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 442 VLHVT-FPKEWKTSDLYQLFSAFGNI---QISWIDD--------------------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp EEEEE-CCTTCCHHHHHHHGGGGCCC---EEEECSS--------------------SEEEEECSCHHHHHHHHHHHTT
T ss_pred EEEEe-CCCCCCHHHHHHHHHhcCCE---EEEEEcC--------------------CeEEEEECCHHHHHHHHHHHHh
Confidence 55555 89999999999999999954 3333222 4699999999999999998753
No 406
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=56.67 E-value=40 Score=22.73 Aligned_cols=34 Identities=26% Similarity=0.321 Sum_probs=26.0
Q ss_pred CeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCC
Q 022981 32 RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG 67 (289)
Q Consensus 32 ~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 67 (289)
.|..+.+.. ..+||.||++...++...++....|
T Consensus 39 ~i~~v~vP~--~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 39 DVYSILASE--SLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp CEEEEEECT--TSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred cEEEEEEec--ccCCEEEEEEecchhHHHHHHCCCC
Confidence 366665542 3689999999999999999886655
No 407
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=56.36 E-value=1.9 Score=32.49 Aligned_cols=28 Identities=11% Similarity=0.132 Sum_probs=19.2
Q ss_pred HHHHHHHhhcCCeeEEEEccCCCCCceEEEEEc
Q 022981 21 YEVEDLFYKYGRILDIELKIPPRPPCYCFVEFE 53 (289)
Q Consensus 21 ~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~ 53 (289)
+|+.++|...|.|+.+... +||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn~~-----kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNVR-----MGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEETT-----TTEEEEEEE
T ss_pred CcccccccceeEEEEEECC-----CCeeEEeeC
Confidence 5666778888888776543 899999976
No 408
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=56.30 E-value=16 Score=28.13 Aligned_cols=56 Identities=14% Similarity=0.092 Sum_probs=37.2
Q ss_pred eEEEcCCCCC---------ccHHHHHHHH--hhcCCeeEEEEccCCCCCceEEEEEccH-HHHHHHHH
Q 022981 8 TIYVGNLPSD---------IREYEVEDLF--YKYGRILDIELKIPPRPPCYCFVEFENA-RDAEDAIR 63 (289)
Q Consensus 8 ~l~V~nLp~~---------~t~~~L~~~F--~~~G~i~~v~~~~~~~~~g~afV~f~~~-~~A~~A~~ 63 (289)
++.|-|+|.. .+..+|.+.| ..|.++.-..+.-.....|+|.|+|..- .--..|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHH
Confidence 3556688872 4567899977 9999886555544445578999999753 33334443
No 409
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=53.96 E-value=47 Score=22.27 Aligned_cols=56 Identities=9% Similarity=0.158 Sum_probs=39.5
Q ss_pred EEcCCCCCccHHHHHHHHhh-cC-CeeEEEEccCCCCCceEEEEEccHHHHHHHHHHh
Q 022981 10 YVGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65 (289)
Q Consensus 10 ~V~nLp~~~t~~~L~~~F~~-~G-~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l 65 (289)
|+-.+...++.-+|++.+++ |+ .|..|.........--|||.+....+|......+
T Consensus 26 ~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 26 LTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAARL 83 (86)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHHHS
T ss_pred EEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHHhh
Confidence 34456789999999999987 55 5666666443333447999999888887765433
No 410
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=44.13 E-value=51 Score=22.04 Aligned_cols=54 Identities=13% Similarity=0.112 Sum_probs=37.8
Q ss_pred EEcCCCCCccHHHHHHHHhh-cC-CeeEEEEccCCCCCceEEEEEccHHHHHHHHH
Q 022981 10 YVGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (289)
Q Consensus 10 ~V~nLp~~~t~~~L~~~F~~-~G-~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~ 63 (289)
|+-.+...++.-||++.+++ || +|..|.........--|||.+...++|.....
T Consensus 25 ~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~aid~~~ 80 (85)
T 1vq8_S 25 LQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVAS 80 (85)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCcHHHHHH
Confidence 34457889999999999986 66 66666664433334479999988877655443
No 411
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=33.92 E-value=83 Score=19.31 Aligned_cols=56 Identities=7% Similarity=-0.019 Sum_probs=43.1
Q ss_pred CCeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHh
Q 022981 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65 (289)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l 65 (289)
..++.|.++.-.-=...|...+.. ..|..+.+... .+-+.|+|.+.++...++..+
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~---~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN---EAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS---EEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc---CCEEEEEECCHHHHHHHHHHc
Confidence 457889999888778889999999 88888888543 467788887666677777754
No 412
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=33.06 E-value=1.1e+02 Score=22.54 Aligned_cols=55 Identities=16% Similarity=0.274 Sum_probs=37.4
Q ss_pred EcCCCCCccHHHHHHHHhh-cC-CeeEEEEccCCCCCceEEEEEccHHHHHHHHHHh
Q 022981 11 VGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65 (289)
Q Consensus 11 V~nLp~~~t~~~L~~~F~~-~G-~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l 65 (289)
+--+...++.-||.+.++. |+ .|..|.........--|||.+....+|......+
T Consensus 83 vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnki 139 (142)
T 3u5e_X 83 VFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIANRI 139 (142)
T ss_dssp EEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHHHhh
Confidence 3356778999999998886 55 5666666433222346999999887777654433
No 413
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=32.77 E-value=1.2e+02 Score=22.55 Aligned_cols=55 Identities=9% Similarity=0.094 Sum_probs=37.4
Q ss_pred EcCCCCCccHHHHHHHHhh-cC-CeeEEEEccCCCCCceEEEEEccHHHHHHHHHHh
Q 022981 11 VGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65 (289)
Q Consensus 11 V~nLp~~~t~~~L~~~F~~-~G-~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l 65 (289)
+--+...++.-||.+.++. |+ .|..|.........--|||.+....+|......+
T Consensus 91 vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvAnki 147 (150)
T 4a17_R 91 VFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLANKI 147 (150)
T ss_dssp EEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHHHhh
Confidence 3356778999999998887 55 5666666433222347999998887777654433
No 414
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.34 E-value=24 Score=22.30 Aligned_cols=12 Identities=33% Similarity=0.719 Sum_probs=9.7
Q ss_pred CceEEEEEccHH
Q 022981 45 PCYCFVEFENAR 56 (289)
Q Consensus 45 ~g~afV~f~~~~ 56 (289)
++.|||.|++-.
T Consensus 37 ~~~ClV~FeD~s 48 (68)
T 2e5p_A 37 REVCLVQFEDDS 48 (68)
T ss_dssp TTEEEEEETTTE
T ss_pred CcEEEEEEccCC
Confidence 679999998743
No 415
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=31.64 E-value=92 Score=23.83 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=35.5
Q ss_pred eeeecCCCC-C--------CCHHHHHHHH--HhcCCeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChH
Q 022981 126 RVIVRGLPS-S--------ASWQDLKDHM--RKAGDVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPE 192 (289)
Q Consensus 126 ~l~v~nlp~-~--------~~~~~l~~~f--~~~g~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~ 192 (289)
.+.|.|+|. . ...++|.+.| ..|.++. +.....+.| ..|++.|+|.+--
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~G-----------------h~g~aIv~F~~dw 73 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLG-----------------HSGTAIVEFNKDW 73 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSB-----------------EEEEEEEECCSSH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCC-----------------CceeEEEEecCCh
Confidence 677888876 2 3447899977 8898876 566666664 3689999997653
No 416
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=30.88 E-value=1.2e+02 Score=22.81 Aligned_cols=54 Identities=17% Similarity=0.195 Sum_probs=37.4
Q ss_pred EcCCCCCccHHHHHHHHhh-cC-CeeEEEEccCCCCCceEEEEEccHHHHHHHHHH
Q 022981 11 VGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRG 64 (289)
Q Consensus 11 V~nLp~~~t~~~L~~~F~~-~G-~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~ 64 (289)
+--+...++.-||.+.++. || .|..|.........--|||.+....+|......
T Consensus 97 vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~~KKAiVtL~~g~~aid~~~k 152 (156)
T 2zkr_s 97 VFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANK 152 (156)
T ss_dssp EEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSSCEEEEEEECTTSCHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEECCCCcHHHHHHh
Confidence 3456788999999999886 66 666666643322234799999988776665543
No 417
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=30.65 E-value=58 Score=22.70 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=26.0
Q ss_pred CeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCC
Q 022981 32 RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG 67 (289)
Q Consensus 32 ~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 67 (289)
.|..+... +..+||-|||=.++.++..|++.+.+
T Consensus 40 ~I~Si~~~--~~lkGyIyVEA~~~~~V~~ai~gi~~ 73 (106)
T 3h7h_B 40 QIKSVVAP--EHVKGYIYVEAYKQTHVKQAIEGVGN 73 (106)
T ss_dssp CCCEEEEC--TTCCSEEEEEESSHHHHHHHHTTCGG
T ss_pred ceEEEEec--CCCceEEEEEeCCHHHHHHHHhcccc
Confidence 46666443 34699999999999999999986643
No 418
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=27.67 E-value=1e+02 Score=23.09 Aligned_cols=53 Identities=17% Similarity=0.170 Sum_probs=36.4
Q ss_pred EcCCCCCccHHHHHHHHhh-cC-CeeEEEEccCCCCCceEEEEEccHHHHHHHHH
Q 022981 11 VGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (289)
Q Consensus 11 V~nLp~~~t~~~L~~~F~~-~G-~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~ 63 (289)
+--+...++.-||.+.++. |+ .|..|.........--|||.+....+|.....
T Consensus 93 vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAn 147 (152)
T 3iz5_X 93 VFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVAN 147 (152)
T ss_dssp EEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHG
T ss_pred EEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEcCCCCcHHHHHH
Confidence 3346678889999988876 55 56666664433234479999998888776544
No 419
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=27.11 E-value=34 Score=21.69 Aligned_cols=11 Identities=36% Similarity=0.845 Sum_probs=9.5
Q ss_pred CceEEEEEccH
Q 022981 45 PCYCFVEFENA 55 (289)
Q Consensus 45 ~g~afV~f~~~ 55 (289)
.|.|+|.|.+-
T Consensus 41 ~gtC~V~F~D~ 51 (66)
T 2eqj_A 41 KQSCFIIFEDS 51 (66)
T ss_dssp TTEEEEEETTT
T ss_pred CcEEEEEEccC
Confidence 78999999874
No 420
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=26.88 E-value=52 Score=27.11 Aligned_cols=31 Identities=29% Similarity=0.423 Sum_probs=24.9
Q ss_pred CeEEEcCCCCCccHHHHHHHHhhcCCeeEEEE
Q 022981 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIEL 38 (289)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~ 38 (289)
.-+.|+|||+.++..-|..++.. ..+..+.+
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 45789999999999999999987 66554433
No 421
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=25.39 E-value=35 Score=28.27 Aligned_cols=32 Identities=22% Similarity=0.240 Sum_probs=25.4
Q ss_pred CeEEEcCCCCCccHHHHHHHHhhcCCeeEEEE
Q 022981 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIEL 38 (289)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~ 38 (289)
..+.|+|||+.++..-|..++.....+..+.+
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~ 146 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHF 146 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEE
Confidence 45789999999999999999986555555544
No 422
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=24.98 E-value=1.3e+02 Score=22.17 Aligned_cols=42 Identities=14% Similarity=0.257 Sum_probs=29.1
Q ss_pred HHHHHhhcCCeeEEEEc----cCC--------------CCCceEEEEEccHHHHHHHHHH
Q 022981 23 VEDLFYKYGRILDIELK----IPP--------------RPPCYCFVEFENARDAEDAIRG 64 (289)
Q Consensus 23 L~~~F~~~G~i~~v~~~----~~~--------------~~~g~afV~f~~~~~A~~A~~~ 64 (289)
--++|..||.+.-+..- .++ ..--|.+|+|.+.+..+++.+.
T Consensus 50 a~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~~~k 109 (141)
T 2okq_A 50 AAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQK 109 (141)
T ss_dssp HHHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHH
Confidence 34689999977666552 111 1113999999999998888854
No 423
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=24.85 E-value=72 Score=28.14 Aligned_cols=59 Identities=24% Similarity=0.292 Sum_probs=40.6
Q ss_pred EEEcCCCCCc----cHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCCce
Q 022981 9 IYVGNLPSDI----REYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR 74 (289)
Q Consensus 9 l~V~nLp~~~----t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 74 (289)
-+||||..-. ....+.++..+||+|..+++- +.-+|...+++.++.++. -++..+.+++
T Consensus 17 PliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g------~~~~vvv~~p~~~k~il~-~~~~~f~~rp 79 (494)
T 3swz_A 17 PLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG------TKTTVIVGHHQLAKEVLI-KKGKDFSGRP 79 (494)
T ss_dssp CEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET------TEEEEEECSHHHHHHHHT-TTTTTTBBCC
T ss_pred CeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC------CCCEEEECCHHHHHHHHH-hCcHhhCCCC
Confidence 4788886432 235677888899999888773 344677789999998886 3444444443
No 424
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=24.11 E-value=41 Score=21.92 Aligned_cols=12 Identities=33% Similarity=0.719 Sum_probs=9.7
Q ss_pred CceEEEEEccHH
Q 022981 45 PCYCFVEFENAR 56 (289)
Q Consensus 45 ~g~afV~f~~~~ 56 (289)
+..|||.|.+..
T Consensus 54 ~e~ClV~F~D~S 65 (79)
T 2m0o_A 54 REVCLVQFEDDS 65 (79)
T ss_dssp TTEEEEEETTSC
T ss_pred CCEEEEEEcCCC
Confidence 679999998753
No 425
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=23.61 E-value=1.5e+02 Score=20.41 Aligned_cols=48 Identities=17% Similarity=0.244 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHh-cC---CeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHH
Q 022981 134 SSASWQDLKDHMRK-AG---DVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKY 196 (289)
Q Consensus 134 ~~~~~~~l~~~f~~-~g---~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~ 196 (289)
..++..+|++...+ |+ .+..+.-.+..-| .|++.|||.| |.+.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG--------------~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFG--------------KLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSS--------------SSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCC--------------CceEEEEEEE-ECCHHHHHh
Confidence 34556677776665 33 3344443444443 5688899987 777777654
No 426
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=23.11 E-value=53 Score=22.49 Aligned_cols=22 Identities=23% Similarity=0.116 Sum_probs=16.3
Q ss_pred EcCCCCCccHHHHHHHHhh-cCC
Q 022981 11 VGNLPSDIREYEVEDLFYK-YGR 32 (289)
Q Consensus 11 V~nLp~~~t~~~L~~~F~~-~G~ 32 (289)
|.+|.+.||..||...+.+ .|.
T Consensus 21 VsGvT~~TTC~DVV~aL~~~~G~ 43 (95)
T 2cs4_A 21 VCGVTEVTTCQEVVIALAQAIGR 43 (95)
T ss_dssp CSSBCSSSCHHHHHHHHHHHHSC
T ss_pred EECCCCCCcHHHHHHHHHhccCC
Confidence 4478888999999996654 454
No 427
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=23.00 E-value=61 Score=30.53 Aligned_cols=53 Identities=21% Similarity=0.273 Sum_probs=39.5
Q ss_pred CCCCCccHHHHHHHHh----hcCCeeEEEEccC--CCCCceEEEEEccHHHHHHHHHHh
Q 022981 13 NLPSDIREYEVEDLFY----KYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGR 65 (289)
Q Consensus 13 nLp~~~t~~~L~~~F~----~~G~i~~v~~~~~--~~~~g~afV~f~~~~~A~~A~~~l 65 (289)
..+.+.+--||..+|- .+|.|..+.|... .....++++.|.+.++|..|+..+
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHH
Confidence 3455555557888883 6899999988543 333567899999999999998766
No 428
>1x8d_A Hypothetical protein YIIL; mutarotase, L-rhamnose, biosynthetic protein; HET: RNS; 1.80A {Escherichia coli} SCOP: d.58.4.21
Probab=22.40 E-value=1.4e+02 Score=20.54 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=22.1
Q ss_pred HHHHHHhhcCCeeEEEEccCC-CCCceEEEEEcc
Q 022981 22 EVEDLFYKYGRILDIELKIPP-RPPCYCFVEFEN 54 (289)
Q Consensus 22 ~L~~~F~~~G~i~~v~~~~~~-~~~g~afV~f~~ 54 (289)
+|.+.+...| |.+..|..++ ...-|+++++.+
T Consensus 28 Ev~~~L~~aG-i~~ysIfl~~~~~~LF~~~E~~d 60 (104)
T 1x8d_A 28 ELEAVLKSHG-AHNYAIYLDKARNLLFAMVEIES 60 (104)
T ss_dssp HHHHHHHHTT-EEEEEEEEETTTTEEEEEEEESC
T ss_pred HHHHHHHHcC-CeEEEEEEECCCCeEEEEEEEcC
Confidence 5666778887 6666665543 245699999987
No 429
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=22.09 E-value=1.3e+02 Score=17.77 Aligned_cols=55 Identities=9% Similarity=0.102 Sum_probs=39.7
Q ss_pred CeEEEcCCCCCccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEcc---HHHHHHHHHH
Q 022981 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFEN---ARDAEDAIRG 64 (289)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~---~~~A~~A~~~ 64 (289)
.++.|.++.-..-...|...+.....|..+.+... .+-+.|+|.. .++...++..
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~---~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFA---LEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETT---TTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec---CCEEEEEECCCCCHHHHHHHHHH
Confidence 46788888777777889999999888888888544 4677888843 3444555553
No 430
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=22.08 E-value=60 Score=28.40 Aligned_cols=56 Identities=18% Similarity=0.296 Sum_probs=35.2
Q ss_pred EEcCCCC---CccHHHHHHHHhhcCCeeEEEEccCCCCCceEEEEEccHHHHHHHHHHhCCceeCC
Q 022981 10 YVGNLPS---DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (289)
Q Consensus 10 ~V~nLp~---~~t~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 72 (289)
+||||.. .-....+.++..+||+|..+++- +.-+|...+++.++.++. -++..+.+
T Consensus 20 ~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g------~~~~vvv~~p~~i~~vl~-~~~~~f~~ 78 (479)
T 3tbg_A 20 GLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLA------WTPVVVLNGLAAVREALV-THGEDTAD 78 (479)
T ss_dssp TTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEET------TEEEEEEEHHHHHHHHHT-TTGGGSCB
T ss_pred cccchHhhcCCCHHHHHHHHHHHhCCEEEEEEC------CeeEEEECCHHHHHHHHH-hCChhhcC
Confidence 4566532 22345577888999999888773 233466678888888775 33444433
No 431
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=21.96 E-value=1.5e+02 Score=20.45 Aligned_cols=49 Identities=18% Similarity=0.322 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHh-cC---CeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHHH
Q 022981 134 SSASWQDLKDHMRK-AG---DVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKYA 197 (289)
Q Consensus 134 ~~~~~~~l~~~f~~-~g---~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 197 (289)
..++..+|++...+ |+ .+..+.-.+..-| .|++.|||.| |.+.+.|.+-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG--------------~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYG--------------MQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSS--------------SSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCC--------------CceEEEEEEE-ECCHHHHHhh
Confidence 34566777777765 33 3333443343333 5688899977 7777776654
No 432
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=20.86 E-value=41 Score=21.75 Aligned_cols=10 Identities=30% Similarity=0.491 Sum_probs=8.3
Q ss_pred CceEEEEEcc
Q 022981 45 PCYCFVEFEN 54 (289)
Q Consensus 45 ~g~afV~f~~ 54 (289)
+||+||+=.+
T Consensus 14 KGfGFI~~~d 23 (74)
T 2k5n_A 14 KGFGFIKDEN 23 (74)
T ss_dssp TTEEEEEESS
T ss_pred CCeEEEecCC
Confidence 8999998764
No 433
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=20.78 E-value=36 Score=27.75 Aligned_cols=31 Identities=32% Similarity=0.368 Sum_probs=24.6
Q ss_pred eEEEcCCCCCccHHHHHHHHhhcCCeeEEEE
Q 022981 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIEL 38 (289)
Q Consensus 8 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~ 38 (289)
-..|+|||+.++...|..++.....+..+.+
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~l 128 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHF 128 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEE
Confidence 3489999999999999999987666655444
No 434
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=20.28 E-value=1.6e+02 Score=20.49 Aligned_cols=47 Identities=21% Similarity=0.301 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHh-cC---CeeEEEEeeCCCCCCchhHHHhhhhhcccccceEEEEecCChHHHHH
Q 022981 135 SASWQDLKDHMRK-AG---DVCFAEVSRDSEGWQSPAMILLTLNFLCVYSGTYGVVDYTNPEDMKY 196 (289)
Q Consensus 135 ~~~~~~l~~~f~~-~g---~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~ 196 (289)
.++..+|++...+ |+ .+..+.-.+..-| .|.+.|||.| |.+.+.|.+
T Consensus 38 tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG--------------~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 38 TPSRKDVKGKLVAMLDLNPETTVIQYIRSYFG--------------SYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCHHHHHHHHHHHHTCCGGGEEEEEEECCTT--------------CSEEEEEEEE-ESSHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCC--------------CceEEEEEEE-ECCHHHHHh
Confidence 4456677666665 43 2333443344444 5688899987 777777664
No 435
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=20.18 E-value=75 Score=25.76 Aligned_cols=30 Identities=30% Similarity=0.304 Sum_probs=22.9
Q ss_pred CeEEEcCCCCCccHHHHHHHHhhcCCeeEE
Q 022981 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDI 36 (289)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v 36 (289)
..+.|+|||+.++...|..++.....+..+
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~~ 120 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIADM 120 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcceE
Confidence 358899999999999998888754344433
Done!