BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022982
(289 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QWG|A Chain A, Crystal Structure Of Methanococcus Jannaschii
Phosphosulfolactate Synthase
Length = 251
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 106/249 (42%), Gaps = 41/249 (16%)
Query: 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV-STGDWAEHLIRNGPS 101
+ED + G ++D +KF G+ +++ + ++E + + V G E+ G
Sbjct: 28 VEDYLKVCGDYIDFVKFGWGTSAVIDRDVVKEKINYYKDWGIKVYPGGTLFEYAYSKGK- 86
Query: 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPS 161
F E++ +C+++GF+ +E++ GS +I E ++ K G F V+
Sbjct: 87 -FDEFLNECEKLGFEAVEISDGSSDISLEERNNAIKRAKDNG------FMVLTEVGKKMP 139
Query: 162 DRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK---------H 212
D+D+ +D I+ L+AGAD ++I+ + K
Sbjct: 140 DKDKQL---------------TIDDRIKLINFDLDAGADYVIIEGRESGKGKGLFDKEGK 184
Query: 213 ADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYGPKVNLF-VDHSQVMDLEC--- 268
D++AK + + K +FEA FI ++G VNL + +V+ LE
Sbjct: 185 VKENELDVLAK---NVDINKVIFEAPQKSQQVAFILKFGSSVNLANIAFDEVISLETLRR 241
Query: 269 -LRGRNLGK 276
LRG GK
Sbjct: 242 GLRGDTFGK 250
>pdb|1U83|A Chain A, Psl Synthase From Bacillus Subtilis
Length = 276
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 111/263 (42%), Gaps = 40/263 (15%)
Query: 17 RAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVV 76
R KPR G + + Y L +D ++D +KF G+ SL+ K +EE +
Sbjct: 33 RTNKPRETGQSILIDNGYPL----QFFKDAIAGASDYIDFVKFGWGT-SLLTKD-LEEKI 86
Query: 77 KRAHQHDVYVSTGD--WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLR 134
+HD+ G + +++ + + F Y C G + IE++ G+L +
Sbjct: 87 STLKEHDITFFFGGTLFEKYVSQKKVNEFHRY---CTYFGCEYIEISNGTLPXTNKEKAA 143
Query: 135 YVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERC 194
Y+ +F V+ S++ S A +A S E++E +
Sbjct: 144 YIA-------DFSDEFLVL---SEVGSKD-----AELASRQSSEEWLEYI-------VED 181
Query: 195 LEAGADMIMIDSDD-----VCKHADSLRADIIAKVIGRLGL-EKTMFEATNPRTSEWFIR 248
EAGA+ ++ ++ + +C + +R I+ +I + +FEA N + FI+
Sbjct: 182 XEAGAEKVITEARESGTGGICSSSGDVRFQIVDDIISSDIDINRLIFEAPNKTLQQGFIQ 241
Query: 249 RYGPKVNLF-VDHSQVMDLECLR 270
+ GP VNL + + LE LR
Sbjct: 242 KIGPNVNLANIPFHDAIALETLR 264
>pdb|1JCJ|A Chain A, Observation Of Covalent Intermediates In An Enzyme
Mechanism At Atomic Resolution
pdb|1JCJ|B Chain B, Observation Of Covalent Intermediates In An Enzyme
Mechanism At Atomic Resolution
Length = 260
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 187 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM--FEATNPRTS 243
LIR+A E ++AGAD I + V +A A I+ +VI +G+EKT+ A RT+
Sbjct: 151 LIRKASEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTVGFLPAGGVRTA 210
Query: 244 E 244
E
Sbjct: 211 E 211
>pdb|3NPX|A Chain A, Optimization Of The In Silico Designed Kemp Eliminase Ke70
By Computational Design And Directed Evolution
pdb|3NPX|B Chain B, Optimization Of The In Silico Designed Kemp Eliminase Ke70
By Computational Design And Directed Evolution
Length = 264
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 187 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM--FEATNPRTS 243
LIR+A E ++AGAD I+ + V A A I+ +VI +G+EKT+ A RT+
Sbjct: 151 LIRKASEISIKAGADHIVTSTGKVAVGATPESARIMMEVIRDMGVEKTVGFIPAGGVRTA 210
Query: 244 E 244
E
Sbjct: 211 E 211
>pdb|3NPW|A Chain A, In Silico Designed Of An Improved Kemp Eliminase Ke70
Mutant By Computational Design And Directed Evolution
pdb|3NPW|B Chain B, In Silico Designed Of An Improved Kemp Eliminase Ke70
Mutant By Computational Design And Directed Evolution
Length = 264
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 187 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM--FEATNPRTS 243
LIR+A E ++AGAD I+ + V A A I+ +VI +G+EKT+ A RT+
Sbjct: 151 LIRKASEISIKAGADHIVTSTGKVAVGATPESARIMMEVIRDMGVEKTVGFIPAGGVRTA 210
Query: 244 E 244
E
Sbjct: 211 E 211
>pdb|3NPU|A Chain A, Optimization Of The In Silico Designed Kemp Eliminase Ke70
By Computational Design And Directed Evolution
pdb|3NPU|B Chain B, Optimization Of The In Silico Designed Kemp Eliminase Ke70
By Computational Design And Directed Evolution
pdb|3NPV|B Chain B, Optimization Of The In Silico Designed Kemp Eliminase Ke70
By Computational Design And Directed Evolution
pdb|3NPV|A Chain A, Optimization Of The In Silico Designed Kemp Eliminase Ke70
By Computational Design And Directed Evolution
Length = 263
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 187 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM--FEATNPRTS 243
LIR+A E ++AGAD I+ + V A A I+ +VI +G+EKT+ A RT+
Sbjct: 150 LIRKASEISIKAGADHIVTSTGKVAVGATPESARIMMEVIRDMGVEKTVGFIPAGGVRTA 209
Query: 244 E 244
E
Sbjct: 210 E 210
>pdb|3NQ2|A Chain A, Optimization Of The In Silico Designed Kemp Eliminase Ke70
By Computational Design And Directed Evolution R2 35G
pdb|3NQ2|B Chain B, Optimization Of The In Silico Designed Kemp Eliminase Ke70
By Computational Design And Directed Evolution R2 35G
Length = 264
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 187 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 234
LIR+A E ++AGAD I+ + V + A A I+ +VI +G+EKT+
Sbjct: 151 LIRKASEISIKAGADHIVTSTGKVAEGATPESARIMMEVIRDMGVEKTV 199
>pdb|1JCL|A Chain A, Observation Of Covalent Intermediates In An Enzyme
Mechanism At Atomic Resolution
pdb|1JCL|B Chain B, Observation Of Covalent Intermediates In An Enzyme
Mechanism At Atomic Resolution
pdb|1P1X|A Chain A, Comparison Of Class I Aldolase Binding Site Architecture
Based On The Crystal Structure Of
2-Deoxyribose-5-Phosphate Aldolase Determined At 0.99
Angstrom Resolution
pdb|1P1X|B Chain B, Comparison Of Class I Aldolase Binding Site Architecture
Based On The Crystal Structure Of
2-Deoxyribose-5-Phosphate Aldolase Determined At 0.99
Angstrom Resolution
Length = 260
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 187 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 234
LIR+A E ++AGAD I + V +A A I+ +VI +G+EKT+
Sbjct: 151 LIRKASEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTV 199
>pdb|4F7C|A Chain A, Crystal Structure Of Bovine Cd1d With Bound
C12-Di-Sulfatide
pdb|4F7C|C Chain C, Crystal Structure Of Bovine Cd1d With Bound
C12-Di-Sulfatide
pdb|4F7E|A Chain A, Crystal Structure Of Bovine Cd1d With Bound
C16:0-Alpha-Galactosyl Ceramide
Length = 283
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 41 NVLEDIFESMGQFVDGLKFSGGSHSLMP--KPFIEEVVKRAHQHDVYVSTGDWAEHLIRN 98
N+ E + Q D L F G S P PFI+EV+K +Q+ T W H I
Sbjct: 108 NISESFLRAAFQGRDVLSFQGMSWVSAPDAPPFIQEVIKVLNQNQGTKETVHWLLHDI-- 165
Query: 99 GPSAFKEYVEDCKQVGFDTIELNV 122
+ E V Q G +E V
Sbjct: 166 ----WPELVRGVLQTGKSELEKQV 185
>pdb|1KTN|A Chain A, Structural Genomics, Protein Ec1535
pdb|1KTN|B Chain B, Structural Genomics, Protein Ec1535
Length = 250
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 187 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 234
LIR+A E ++AGAD I + V +A A I+ +VI +G+EKT+
Sbjct: 150 LIRKASEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTV 198
>pdb|3NR0|A Chain A, Optimization Of The In Silico Designed Kemp Eliminase Ke70
By Computational Design And Directed Evolution R6 610A
pdb|3NR0|B Chain B, Optimization Of The In Silico Designed Kemp Eliminase Ke70
By Computational Design And Directed Evolution R6 610A
Length = 271
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 187 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 234
LIR+A E ++AGAD I+ + V A A I+ +VI +G+EKT+
Sbjct: 151 LIRKASEISIKAGADNIVTSTGKVAVGATPESARIMMEVIRDMGVEKTV 199
>pdb|3Q2D|A Chain A, Optimization Of The In Silico Designed Kemp Eliminase Ke70
By Computational Design And Directed Evolution
pdb|3Q2D|B Chain B, Optimization Of The In Silico Designed Kemp Eliminase Ke70
By Computational Design And Directed Evolution
Length = 272
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 187 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 234
LIR+A E ++AGAD I+ + V A A I+ +VI +G+EKT+
Sbjct: 152 LIRKASEISIKAGADNIVTSTGKVAVGATPESARIMMEVIRDMGVEKTV 200
>pdb|2QJK|B Chain B, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|E Chain E, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|H Chain H, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|K Chain K, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|N Chain N, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|Q Chain Q, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJP|B Chain B, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
pdb|2QJP|E Chain E, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
pdb|2QJP|H Chain H, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
pdb|2QJP|K Chain K, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
Length = 256
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 12/70 (17%)
Query: 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDC--- 110
+G+K + GS MP P ++++V+ A HD V H + SAF + +
Sbjct: 172 ANGVKTTAGSWIAMPPPLMDDLVEYADGHDASV-------HAMAEDVSAFLMWAAEPKLM 224
Query: 111 --KQVGFDTI 118
KQ GF +
Sbjct: 225 ARKQAGFTAV 234
>pdb|2FYN|B Chain B, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|E Chain E, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|H Chain H, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|K Chain K, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|N Chain N, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|Q Chain Q, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2QJY|B Chain B, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|E Chain E, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|H Chain H, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|K Chain K, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|N Chain N, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|Q Chain Q, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
Length = 269
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 12/70 (17%)
Query: 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDC--- 110
+G+K + GS MP P ++++V+ A HD V H + SAF + +
Sbjct: 172 ANGVKTTAGSWIAMPPPLMDDLVEYADGHDASV-------HAMAEDVSAFLMWAAEPKLM 224
Query: 111 --KQVGFDTI 118
KQ GF +
Sbjct: 225 ARKQAGFTAV 234
>pdb|3NQ8|A Chain A, Optimization Of The In Silico Designed Kemp Eliminase Ke70
By Computational Design And Directed Evolution R4 85A
Length = 269
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 187 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 234
LIR+A E ++AGAD I+ + V A A I+ +VI +G+E T+
Sbjct: 152 LIRKASEISIKAGADYIVTSTGKVAVGATPESARIMMEVIRDMGVENTV 200
>pdb|3HL2|A Chain A, The Crystal Structure Of The Human Sepsecs-Trnasec Complex
pdb|3HL2|B Chain B, The Crystal Structure Of The Human Sepsecs-Trnasec Complex
pdb|3HL2|C Chain C, The Crystal Structure Of The Human Sepsecs-Trnasec Complex
pdb|3HL2|D Chain D, The Crystal Structure Of The Human Sepsecs-Trnasec Complex
Length = 501
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 169 AYVARAPRSTEYVEDVDLLIRRAERCLEA 197
AY+ A ++DVDL I+R +RCL+A
Sbjct: 432 AYLNAASAIGMKMQDVDLFIKRLDRCLKA 460
>pdb|1I8J|A Chain A, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4,7-Dioxosebacic Acid
pdb|1I8J|B Chain B, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4,7-Dioxosebacic Acid
Length = 323
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 115 FDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174
+ +E G + IPE+ L R + + +AG+++ F + + + SD R G VAR
Sbjct: 43 YKAVEAMPGVMRIPEKHLAREIERIANAGIRSVMTFGISHHTDETGSDAWREDG-LVARM 101
Query: 175 PR 176
R
Sbjct: 102 SR 103
>pdb|3CT7|A Chain A, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CT7|B Chain B, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CT7|C Chain C, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CT7|D Chain D, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CT7|E Chain E, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CT7|F Chain F, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CTL|A Chain A, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
pdb|3CTL|B Chain B, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
pdb|3CTL|C Chain C, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
pdb|3CTL|D Chain D, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
pdb|3CTL|E Chain E, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
pdb|3CTL|F Chain F, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
Length = 231
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 70/182 (38%), Gaps = 27/182 (14%)
Query: 51 GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQ----HDVYVSTGDWAEHLIRNGPSAFKEY 106
G FV L S F+ +V K A + H + D+ L R G +
Sbjct: 36 GHFVPNLTLSPF--------FVSQVKKLATKPLDCHLMVTRPQDYIAQLARAGADFITLH 87
Query: 107 VEDCKQVGFDTIE------LNVGSL---EIPEETLLRYV-RLVKSAGLKAKPKFAVMFNK 156
E F I+ + VG + E P E + Y+ + K + P FA +
Sbjct: 88 PETINGQAFRLIDEIRRHDMKVGLILNPETPVEAMKYYIHKADKITVMTVDPGFA---GQ 144
Query: 157 SDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRA--ERCLEAGADMIMIDSDDVCKHAD 214
IP D+ R EY +VD +A E+ + AGAD+ ++ + + HA+
Sbjct: 145 PFIPEMLDKLAELKAWREREGLEYEIEVDGSCNQATYEKLMAAGADVFIVGTSGLFNHAE 204
Query: 215 SL 216
++
Sbjct: 205 NI 206
>pdb|1B4E|A Chain A, X-Ray Structure Of 5-Aminolevulinic Acid Dehydratase
Complexed With The Inhibitor Levulinic Acid
Length = 323
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 115 FDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174
+ +E G + IPE+ L R + + +AG+++ F + + + SD R G VAR
Sbjct: 43 YKAVEAMPGVMRIPEKHLAREIERIANAGIRSVMTFGISHHTDETGSDAWREDG-LVARM 101
Query: 175 PR 176
R
Sbjct: 102 SR 103
>pdb|1L6S|A Chain A, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4,7-Dioxosebacic Acid
pdb|1L6S|B Chain B, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4,7-Dioxosebacic Acid
pdb|1L6Y|A Chain A, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4-Oxosebacic Acid
pdb|1L6Y|B Chain B, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4-Oxosebacic Acid
Length = 323
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 115 FDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174
+ +E G + IPE+ L R + + +AG+++ F + + + SD R G VAR
Sbjct: 43 YKAVEAMPGVMRIPEKHLAREIERIANAGIRSVMTFGISHHTDETGSDAWREDG-LVARM 101
Query: 175 PR 176
R
Sbjct: 102 SR 103
>pdb|3NGW|A Chain A, Crystal Structure Of Molybdopterin-Guanine Dinucleotide
Biosynthesis Protein A From Archaeoglobus Fulgidus,
Northeast Structural Genomics Consortium Target Gr189
Length = 208
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 218 ADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYGPKVNLFV 258
A ++ V R+G EKT + EW + +Y P +FV
Sbjct: 4 AVLVGGVGRRIGXEKTEVXLCGKKLIEWVLEKYSPFQTVFV 44
>pdb|2WAN|A Chain A, Pullulanase From Bacillus Acidopullulyticus
Length = 921
Score = 28.1 bits (61), Expect = 5.2, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 11/69 (15%)
Query: 62 GSHSLMPKPFIEEVVKRAHQHDVYVSTGD----------WAEHLIRNGPSAFKEYVEDCK 111
G H P ++EV+ AH D + + EH + GP K ++ K
Sbjct: 421 GDHEQTPANPVDEVIYEAHVRDFSIDANSGMKNKGKYLAFTEHGTK-GPDHVKTGIDSLK 479
Query: 112 QVGFDTIEL 120
++G T++L
Sbjct: 480 ELGITTVQL 488
>pdb|1NVM|A Chain A, Crystal Structure Of A Bifunctional Aldolase-Dehydrogenase
: Sequestering A Reactive And Volatile Intermediate
pdb|1NVM|C Chain C, Crystal Structure Of A Bifunctional Aldolase-Dehydrogenase
: Sequestering A Reactive And Volatile Intermediate
pdb|1NVM|E Chain E, Crystal Structure Of A Bifunctional Aldolase-Dehydrogenase
: Sequestering A Reactive And Volatile Intermediate
pdb|1NVM|G Chain G, Crystal Structure Of A Bifunctional Aldolase-Dehydrogenase
: Sequestering A Reactive And Volatile Intermediate
Length = 345
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK----AKPKFAVMFNKSDI 159
K+++E + +G DT+ + S IP E L +L++S G A A+ N DI
Sbjct: 123 KQHIEYARNLGMDTVGFLMMSHMIPAEKLAEQGKLMESYGATCIYMADSGGAMSMN--DI 180
Query: 160 PSDRDRAFGAYV 171
DR RAF A +
Sbjct: 181 -RDRMRAFKAVL 191
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 185 DLLIRRAERCLEAGADMIMIDSDD 208
DL++ A+ C+ AGAD+ D D+
Sbjct: 143 DLIVHEAKECIAAGADVNAXDCDE 166
>pdb|3B4U|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Agrobacterium Tumefaciens Str. C58
pdb|3B4U|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Agrobacterium Tumefaciens Str. C58
Length = 294
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 167 FGAYVA-RAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 204
FG A P T+ D+D +I A RCL G D + +
Sbjct: 5 FGLSAALTTPFKTDGTVDIDAMIAHARRCLSNGCDSVTL 43
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,846,291
Number of Sequences: 62578
Number of extensions: 362729
Number of successful extensions: 941
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 904
Number of HSP's gapped (non-prelim): 49
length of query: 289
length of database: 14,973,337
effective HSP length: 98
effective length of query: 191
effective length of database: 8,840,693
effective search space: 1688572363
effective search space used: 1688572363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)