BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022982
(289 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O27710|PSLS_METTH Phosphosulfolactate synthase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=comA PE=3 SV=1
Length = 258
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 118/273 (43%), Gaps = 37/273 (13%)
Query: 17 RAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVV 76
R+ KPR+ G+T + +S+ D+ E +VD +KF G+ L + ++E V
Sbjct: 11 RSGKPRKNGITMVLDKGMGPASAR----DLMEISSDYVDFIKFGWGTLPLHRRDTVKEKV 66
Query: 77 KRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYV 136
DV G I + +EY ++ + +GF+T+E++ G++EI E R +
Sbjct: 67 DMYRSFDVEPYPGGTLFE-IAHLNDKVEEYFQEARSLGFETLEISNGTVEIETEEKCRLI 125
Query: 137 RLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLE 196
+ G F V+ +RDR + D +R L
Sbjct: 126 EMAVDEG------FMVLSEVGKKDPERDRLL---------------EPDDRVRLVRADLR 164
Query: 197 AGADMIMIDSDD------VCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRY 250
AGA M+++++ + + ++R D + RL +++ ++EA +FI +
Sbjct: 165 AGASMVLMEARESGQNIGIYDERGNIREDEFNHLTDRLPMDRIIWEAPQKSQQVYFILKI 224
Query: 251 GPKVNL-FVDHSQVMDLEC----LRGRNLGKSH 278
GP VNL + ++ LE LRG LGK +
Sbjct: 225 GPDVNLGNIPPEEITALETIRRGLRGDTLGKVN 257
>sp|Q57703|PSLS_METJA Phosphosulfolactate synthase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=comA PE=1 SV=1
Length = 251
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 106/249 (42%), Gaps = 41/249 (16%)
Query: 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV-STGDWAEHLIRNGPS 101
+ED + G ++D +KF G+ +++ + ++E + + V G E+ G
Sbjct: 28 VEDYLKVCGDYIDFVKFGWGTSAVIDRDVVKEKINYYKDWGIKVYPGGTLFEYAYSKGK- 86
Query: 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPS 161
F E++ +C+++GF+ +E++ GS +I E ++ K G F V+
Sbjct: 87 -FDEFLNECEKLGFEAVEISDGSSDISLEERKNAIKRAKDNG------FMVLTEVGKKMP 139
Query: 162 DRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK---------H 212
D+D+ +D I+ L+AGAD ++I+ + K
Sbjct: 140 DKDKQL---------------TIDDRIKLINFDLDAGADYVIIEGRESGKGIGLFDKEGK 184
Query: 213 ADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYGPKVNLF-VDHSQVMDLEC--- 268
D++AK + + K +FEA FI ++G VNL + +V+ LE
Sbjct: 185 VKENELDVLAK---NVDINKVIFEAPQKSQQVAFILKFGSSVNLANIAFDEVISLETLRR 241
Query: 269 -LRGRNLGK 276
LRG GK
Sbjct: 242 GLRGDTFGK 250
>sp|O06739|PSLS_BACSU Phosphosulfolactate synthase OS=Bacillus subtilis (strain 168)
GN=yitD PE=1 SV=1
Length = 252
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 113/263 (42%), Gaps = 40/263 (15%)
Query: 17 RAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVV 76
R KPR G + + Y L +D ++D +KF G+ SL+ K +EE +
Sbjct: 11 RTNKPRETGQSILIDNGYPL----QFFKDAIAGASDYIDFVKFGWGT-SLLTKD-LEEKI 64
Query: 77 KRAHQHDVYVSTGD--WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLR 134
+HD+ G + +++ + + F Y C G + IE++ G+L + +
Sbjct: 65 STLKEHDITFFFGGTLFEKYVSQKKVNEFHRY---CTYFGCEYIEISNGTLPMTNKEKAA 121
Query: 135 YVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERC 194
Y+ +F V+ S++ S A +A S E++E +
Sbjct: 122 YIA-------DFSDEFLVL---SEVGSKD-----AELASRQSSEEWLEYI-------VED 159
Query: 195 LEAGADMIMIDSDD-----VCKHADSLRADIIAKVIGRLGL-EKTMFEATNPRTSEWFIR 248
+EAGA+ ++ ++ + +C + +R I+ +I + +FEA N + FI+
Sbjct: 160 MEAGAEKVITEARESGTGGICSSSGDVRFQIVDDIISSDIDINRLIFEAPNKTLQQGFIQ 219
Query: 249 RYGPKVNLF-VDHSQVMDLECLR 270
+ GP VNL + + LE LR
Sbjct: 220 KIGPNVNLANIPFHDAIALETLR 242
>sp|Q9AF21|PSLS_XANP2 Phosphosulfolactate synthase OS=Xanthobacter autotrophicus (strain
ATCC BAA-1158 / Py2) GN=xecG PE=3 SV=2
Length = 303
Score = 34.3 bits (77), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 50/265 (18%), Positives = 109/265 (41%), Gaps = 39/265 (14%)
Query: 17 RAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVV 76
R +PR+ G+T + ++ L DI ++D K + G+ +LMP + + +
Sbjct: 24 RVTQPRKRGITMVIDKGIGPAA----LADIDAVAAPYIDHWKLAFGTSALMPPQVLADKL 79
Query: 77 KRAHQHDVYV-STGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRY 135
+ V G E + + +++ +++GF +E++ G++++P + R
Sbjct: 80 AFLRERGVLTYPGGTLLEAAVVQ--QHCRVFMQRAEELGFTAVEISDGTIDLPRDRRRRI 137
Query: 136 VRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCL 195
+ + AGL K D P + E E +A L
Sbjct: 138 IDCAREAGL----VVITEVGKKDPQCQ------------PEAAELAE-------QALDDL 174
Query: 196 EAGADMIMIDSDD------VCKHADSLRADIIAKVIGRLG--LEKTMFEATNPRTSEWFI 247
+ G+ +++++ + + LR+ + ++ LG +++ ++EA +
Sbjct: 175 KWGSSFVIVEARESGRGIGIYDKTGELRSSFLEEIANLLGDKIDQLIWEAPQKEQQAALV 234
Query: 248 RRYGPKVNLF-VDHSQVMDLECLRG 271
R+G V+L V ++V+ LE LR
Sbjct: 235 ARFGANVSLGNVAVNEVLALEALRA 259
>sp|Q6P7H4|NIPA_XENLA NIPA-like protein OS=Xenopus laevis GN=zc3hc1 PE=2 SV=1
Length = 477
Score = 32.0 bits (71), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Query: 72 IEEVVKRAHQHDVYVSTGDWAEH----LIRNGPSAFKEYVEDCKQVGFDTIEL------N 121
++E +++AH+ + EH L+ S ++VE + ++L +
Sbjct: 137 LQEALRKAHEKFCFWPDSPCPEHFWALLVTEPSSVLSDFVERFHNLCHLEMQLPSLKHED 196
Query: 122 VGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSD 162
V S++I E+T+ R +RL++ + KPK N +PSD
Sbjct: 197 VKSMDITEDTVSRLLRLIED---ELKPKEGREANSHSLPSD 234
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,754,108
Number of Sequences: 539616
Number of extensions: 4522544
Number of successful extensions: 11885
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 11853
Number of HSP's gapped (non-prelim): 38
length of query: 289
length of database: 191,569,459
effective HSP length: 116
effective length of query: 173
effective length of database: 128,974,003
effective search space: 22312502519
effective search space used: 22312502519
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)