Query 022982
Match_columns 289
No_of_seqs 114 out of 173
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 07:35:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022982.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022982hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02679 ComA: (2R)-phospho-3- 100.0 8E-94 1.7E-98 657.2 17.3 237 13-276 1-244 (244)
2 TIGR03849 arch_ComA phosphosul 100.0 9.9E-88 2.1E-92 614.3 22.2 226 26-278 1-234 (237)
3 COG1809 (2R)-phospho-3-sulfola 100.0 7.6E-83 1.6E-87 574.6 16.1 244 8-278 1-253 (258)
4 PRK08195 4-hyroxy-2-oxovalerat 97.4 0.0042 9.1E-08 60.1 14.1 167 24-230 78-246 (337)
5 PRK13209 L-xylulose 5-phosphat 97.4 0.0027 5.9E-08 58.1 12.2 159 90-264 11-192 (283)
6 TIGR03217 4OH_2_O_val_ald 4-hy 97.2 0.0045 9.9E-08 59.8 12.4 167 24-230 77-245 (333)
7 cd07937 DRE_TIM_PC_TC_5S Pyruv 97.1 0.0068 1.5E-07 56.7 12.0 165 32-230 83-249 (275)
8 cd07939 DRE_TIM_NifV Streptomy 97.0 0.014 3E-07 53.8 12.2 152 44-228 73-237 (259)
9 PRK08446 coproporphyrinogen II 96.9 0.011 2.5E-07 56.8 11.9 124 53-206 51-186 (350)
10 PRK06294 coproporphyrinogen II 96.9 0.0082 1.8E-07 58.3 10.8 121 52-204 57-189 (370)
11 cd03174 DRE_TIM_metallolyase D 96.9 0.0044 9.6E-08 56.0 8.3 144 54-229 88-246 (265)
12 cd03174 DRE_TIM_metallolyase D 96.8 0.042 9.2E-07 49.6 14.2 141 44-227 25-183 (265)
13 PRK13210 putative L-xylulose 5 96.8 0.037 7.9E-07 50.4 13.8 159 90-264 6-187 (284)
14 cd07943 DRE_TIM_HOA 4-hydroxy- 96.8 0.031 6.6E-07 51.7 13.3 165 24-229 75-241 (263)
15 PF00682 HMGL-like: HMGL-like 96.8 0.011 2.4E-07 53.1 9.8 157 40-228 66-236 (237)
16 TIGR00736 nifR3_rel_arch TIM-b 96.7 0.059 1.3E-06 49.9 14.5 134 39-213 78-227 (231)
17 PRK05628 coproporphyrinogen II 96.7 0.017 3.7E-07 55.9 11.3 124 52-204 58-194 (375)
18 cd07944 DRE_TIM_HOA_like 4-hyd 96.7 0.015 3.2E-07 54.4 10.4 164 24-227 72-237 (266)
19 TIGR00542 hxl6Piso_put hexulos 96.6 0.046 1E-06 50.2 12.5 156 92-263 8-186 (279)
20 cd07937 DRE_TIM_PC_TC_5S Pyruv 96.4 0.052 1.1E-06 50.8 12.3 151 43-228 26-187 (275)
21 TIGR00539 hemN_rel putative ox 96.4 0.031 6.7E-07 53.9 10.6 126 52-205 50-187 (360)
22 PRK05660 HemN family oxidoredu 96.3 0.033 7.1E-07 54.3 10.3 125 52-203 57-192 (378)
23 PRK05904 coproporphyrinogen II 96.3 0.062 1.3E-06 52.2 12.1 125 52-206 55-191 (353)
24 TIGR03128 RuMP_HxlA 3-hexulose 96.2 0.27 5.9E-06 43.2 15.0 167 39-253 10-181 (206)
25 TIGR00538 hemN oxygen-independ 96.2 0.06 1.3E-06 53.6 12.0 127 53-206 102-239 (455)
26 PRK11858 aksA trans-homoaconit 96.2 0.083 1.8E-06 51.7 12.5 149 42-226 80-241 (378)
27 PRK13347 coproporphyrinogen II 96.1 0.093 2E-06 52.4 12.7 126 53-206 103-240 (453)
28 PRK07379 coproporphyrinogen II 96.0 0.04 8.6E-07 54.2 9.6 125 52-203 65-200 (400)
29 TIGR02660 nifV_homocitr homoci 96.0 0.09 2E-06 51.1 11.9 148 50-230 82-243 (365)
30 PRK09249 coproporphyrinogen II 96.0 0.055 1.2E-06 53.9 10.6 127 53-206 102-239 (453)
31 cd07940 DRE_TIM_IPMS 2-isoprop 96.0 0.16 3.5E-06 47.1 12.7 158 42-229 74-245 (268)
32 TIGR01212 radical SAM protein, 95.9 0.17 3.7E-06 48.0 12.9 151 57-236 81-259 (302)
33 PRK05692 hydroxymethylglutaryl 95.8 0.15 3.2E-06 48.3 11.9 150 51-230 90-262 (287)
34 PLN02746 hydroxymethylglutaryl 95.8 0.14 3.1E-06 50.1 12.0 157 40-229 124-303 (347)
35 cd00408 DHDPS-like Dihydrodipi 95.7 0.33 7.1E-06 44.8 13.8 147 101-275 18-197 (281)
36 PRK03170 dihydrodipicolinate s 95.7 0.27 5.9E-06 45.9 13.4 144 101-275 22-201 (292)
37 cd07941 DRE_TIM_LeuA3 Desulfob 95.7 0.2 4.4E-06 46.8 12.5 145 51-226 89-248 (273)
38 PRK08208 coproporphyrinogen II 95.7 0.13 2.8E-06 51.0 11.6 127 54-206 92-229 (430)
39 cd00950 DHDPS Dihydrodipicolin 95.6 0.24 5.2E-06 45.9 12.6 144 101-275 21-200 (284)
40 cd00951 KDGDH 5-dehydro-4-deox 95.6 0.35 7.7E-06 45.4 13.8 143 102-276 22-201 (289)
41 cd07944 DRE_TIM_HOA_like 4-hyd 95.5 0.56 1.2E-05 43.8 14.6 144 42-228 24-176 (266)
42 PRK05799 coproporphyrinogen II 95.5 0.16 3.4E-06 49.1 11.2 124 53-204 51-185 (374)
43 PRK03620 5-dehydro-4-deoxygluc 95.5 0.59 1.3E-05 44.3 14.8 144 101-276 28-208 (303)
44 TIGR03249 KdgD 5-dehydro-4-deo 95.5 0.46 1E-05 44.7 14.0 146 101-275 26-205 (296)
45 TIGR02090 LEU1_arch isopropylm 95.4 0.2 4.3E-06 48.8 11.7 141 54-227 85-238 (363)
46 PF00682 HMGL-like: HMGL-like 95.4 0.14 3E-06 46.0 9.8 144 42-226 18-173 (237)
47 PRK13813 orotidine 5'-phosphat 95.4 0.35 7.7E-06 43.0 12.2 37 39-75 14-50 (215)
48 TIGR03151 enACPred_II putative 95.3 0.2 4.2E-06 47.9 11.0 112 67-229 45-161 (307)
49 PRK01060 endonuclease IV; Prov 95.2 0.35 7.6E-06 44.2 12.1 148 102-263 13-183 (281)
50 cd00377 ICL_PEPM Members of th 95.2 0.4 8.6E-06 44.3 12.5 123 102-251 85-219 (243)
51 COG0826 Collagenase and relate 95.2 0.49 1.1E-05 46.3 13.7 145 42-238 15-172 (347)
52 PRK08207 coproporphyrinogen II 95.2 0.25 5.3E-06 50.3 12.0 128 52-206 217-357 (488)
53 cd07945 DRE_TIM_CMS Leptospira 95.2 0.27 5.8E-06 46.4 11.5 150 42-225 79-243 (280)
54 PRK08599 coproporphyrinogen II 95.2 0.67 1.4E-05 44.9 14.5 125 53-205 51-187 (377)
55 cd02911 arch_FMN Archeal FMN-b 95.1 0.31 6.7E-06 44.8 11.5 124 40-208 84-222 (233)
56 TIGR01037 pyrD_sub1_fam dihydr 95.1 0.34 7.3E-06 45.4 11.9 75 43-125 108-193 (300)
57 PRK12331 oxaloacetate decarbox 95.1 0.22 4.7E-06 50.3 11.2 155 42-231 97-255 (448)
58 PRK09057 coproporphyrinogen II 95.1 0.13 2.9E-06 50.1 9.4 125 52-204 54-189 (380)
59 cd07948 DRE_TIM_HCS Saccharomy 95.1 0.3 6.4E-06 45.7 11.2 151 40-226 74-237 (262)
60 TIGR03551 F420_cofH 7,8-dideme 94.9 0.68 1.5E-05 44.5 13.6 200 39-264 71-308 (343)
61 PRK06582 coproporphyrinogen II 94.9 0.31 6.7E-06 48.0 11.3 123 52-204 61-196 (390)
62 cd07938 DRE_TIM_HMGL 3-hydroxy 94.8 0.54 1.2E-05 44.2 12.4 156 40-230 76-256 (274)
63 TIGR03217 4OH_2_O_val_ald 4-hy 94.8 0.89 1.9E-05 44.1 14.1 141 42-228 28-181 (333)
64 PRK09856 fructoselysine 3-epim 94.8 0.62 1.3E-05 42.4 12.4 145 102-260 14-182 (275)
65 TIGR02320 PEP_mutase phosphoen 94.8 0.69 1.5E-05 44.1 13.1 102 100-229 91-206 (285)
66 TIGR02090 LEU1_arch isopropylm 94.8 0.78 1.7E-05 44.7 13.8 144 41-229 25-180 (363)
67 TIGR03234 OH-pyruv-isom hydrox 94.6 0.69 1.5E-05 41.7 12.2 148 102-264 15-182 (254)
68 cd02810 DHOD_DHPD_FMN Dihydroo 94.6 0.4 8.6E-06 44.4 10.9 80 40-125 110-200 (289)
69 PRK13361 molybdenum cofactor b 94.6 0.46 1E-05 45.3 11.5 130 39-207 46-192 (329)
70 TIGR01108 oadA oxaloacetate de 94.6 0.52 1.1E-05 49.1 12.6 157 42-231 92-250 (582)
71 PRK01130 N-acetylmannosamine-6 94.6 0.97 2.1E-05 40.4 12.9 113 104-252 78-196 (221)
72 TIGR03470 HpnH hopanoid biosyn 94.5 0.86 1.9E-05 43.5 13.0 126 39-205 60-198 (318)
73 TIGR02668 moaA_archaeal probab 94.5 0.69 1.5E-05 43.1 12.1 130 39-207 41-186 (302)
74 PF00701 DHDPS: Dihydrodipicol 94.5 1.4 3.1E-05 41.0 14.2 146 102-276 23-202 (289)
75 smart00729 Elp3 Elongator prot 94.5 2.3 4.9E-05 35.6 14.2 120 54-205 52-187 (216)
76 PRK00915 2-isopropylmalate syn 94.5 0.55 1.2E-05 48.0 12.3 146 42-228 30-187 (513)
77 PRK00278 trpC indole-3-glycero 94.3 0.96 2.1E-05 42.2 12.7 111 107-256 126-238 (260)
78 PRK00311 panB 3-methyl-2-oxobu 94.3 0.24 5.2E-06 46.8 8.6 86 104-206 97-182 (264)
79 COG1082 IolE Sugar phosphate i 94.2 0.94 2E-05 40.7 12.1 146 101-264 15-182 (274)
80 PRK09282 pyruvate carboxylase 94.2 0.72 1.6E-05 48.2 12.6 153 40-229 95-253 (592)
81 PRK07259 dihydroorotate dehydr 94.2 0.77 1.7E-05 43.1 11.8 79 40-125 103-193 (301)
82 PRK12344 putative alpha-isopro 94.1 0.5 1.1E-05 48.5 11.2 171 20-225 69-253 (524)
83 PRK14042 pyruvate carboxylase 94.0 0.93 2E-05 47.5 13.0 171 23-231 75-255 (596)
84 TIGR02666 moaA molybdenum cofa 93.9 2.3 5E-05 40.3 14.6 130 39-207 44-191 (334)
85 PRK12581 oxaloacetate decarbox 93.9 2 4.3E-05 43.9 14.8 156 41-231 105-264 (468)
86 TIGR02109 PQQ_syn_pqqE coenzym 93.9 1.9 4.1E-05 41.2 14.1 97 39-147 38-149 (358)
87 cd06557 KPHMT-like Ketopantoat 93.9 0.33 7.2E-06 45.6 8.7 86 104-206 94-179 (254)
88 PRK13397 3-deoxy-7-phosphohept 93.9 0.93 2E-05 42.7 11.6 143 49-230 94-249 (250)
89 PRK14040 oxaloacetate decarbox 93.8 1.6 3.4E-05 45.7 14.3 151 42-229 98-254 (593)
90 PRK14041 oxaloacetate decarbox 93.8 0.98 2.1E-05 46.0 12.5 146 50-230 105-253 (467)
91 PRK09058 coproporphyrinogen II 93.5 0.56 1.2E-05 46.9 10.2 124 53-204 114-249 (449)
92 PRK00230 orotidine 5'-phosphat 93.5 0.72 1.6E-05 42.2 10.1 41 183-226 185-225 (230)
93 cd04743 NPD_PKS 2-Nitropropane 93.5 0.42 9.1E-06 46.4 8.9 115 41-207 17-132 (320)
94 PRK12331 oxaloacetate decarbox 93.5 0.73 1.6E-05 46.6 10.9 96 102-228 97-192 (448)
95 PRK14040 oxaloacetate decarbox 93.4 0.73 1.6E-05 48.2 11.1 96 102-228 98-193 (593)
96 TIGR02317 prpB methylisocitrat 93.3 0.76 1.6E-05 43.9 10.1 123 71-229 61-197 (285)
97 cd06547 GH85_ENGase Endo-beta- 93.3 0.34 7.3E-06 47.2 7.9 179 51-238 30-242 (339)
98 COG0159 TrpA Tryptophan syntha 93.3 1.4 3E-05 42.0 11.7 150 39-228 29-200 (265)
99 TIGR02660 nifV_homocitr homoci 93.3 1.5 3.3E-05 42.7 12.4 141 41-228 26-180 (365)
100 PRK00164 moaA molybdenum cofac 93.2 1.3 2.7E-05 42.0 11.6 101 39-152 50-167 (331)
101 PRK07094 biotin synthase; Prov 93.2 3.9 8.4E-05 38.6 14.8 173 53-263 86-286 (323)
102 PRK05301 pyrroloquinoline quin 93.1 2.1 4.5E-05 41.4 13.0 129 39-206 47-190 (378)
103 cd06556 ICL_KPHMT Members of t 93.0 0.8 1.7E-05 42.6 9.6 97 108-230 96-192 (240)
104 PRK12330 oxaloacetate decarbox 93.0 0.79 1.7E-05 47.1 10.3 97 101-228 97-193 (499)
105 cd02801 DUS_like_FMN Dihydrour 92.9 1.4 3E-05 39.1 10.8 96 40-141 66-180 (231)
106 PF03060 NMO: Nitronate monoox 92.8 1.3 2.9E-05 42.5 11.1 100 66-207 44-165 (330)
107 TIGR00683 nanA N-acetylneurami 92.8 3.1 6.6E-05 39.3 13.3 80 101-206 21-104 (290)
108 PRK04147 N-acetylneuraminate l 92.6 1.8 3.9E-05 40.6 11.6 143 101-270 24-177 (293)
109 PRK00915 2-isopropylmalate syn 92.5 1 2.2E-05 46.1 10.4 142 54-226 93-249 (513)
110 TIGR02313 HpaI-NOT-DapA 2,4-di 92.5 3.4 7.4E-05 39.0 13.3 78 101-207 21-104 (294)
111 PRK10076 pyruvate formate lyas 92.3 0.66 1.4E-05 42.2 7.9 117 83-233 41-162 (213)
112 PRK09282 pyruvate carboxylase 92.2 1.3 2.8E-05 46.4 10.9 96 102-228 97-192 (592)
113 PRK13111 trpA tryptophan synth 92.2 2 4.4E-05 40.2 11.3 103 39-148 24-147 (258)
114 cd07947 DRE_TIM_Re_CS Clostrid 92.2 1.6 3.4E-05 41.4 10.6 155 40-228 77-258 (279)
115 cd00952 CHBPH_aldolase Trans-o 92.2 2.6 5.7E-05 40.1 12.2 124 101-251 29-160 (309)
116 cd07943 DRE_TIM_HOA 4-hydroxy- 92.2 1.5 3.2E-05 40.6 10.2 91 105-228 89-179 (263)
117 PRK05692 hydroxymethylglutaryl 92.1 1.1 2.5E-05 42.4 9.6 97 107-228 85-193 (287)
118 PRK08195 4-hyroxy-2-oxovalerat 92.1 1.3 2.9E-05 42.9 10.2 91 105-228 92-182 (337)
119 cd07939 DRE_TIM_NifV Streptomy 92.0 1.3 2.8E-05 40.8 9.6 141 41-228 23-177 (259)
120 PRK06015 keto-hydroxyglutarate 92.0 1.8 3.9E-05 39.4 10.3 123 39-212 39-178 (201)
121 PRK12330 oxaloacetate decarbox 92.0 1.8 3.8E-05 44.6 11.3 172 24-231 77-258 (499)
122 cd00954 NAL N-Acetylneuraminic 91.9 5.8 0.00013 37.1 14.0 111 102-238 22-137 (288)
123 COG2896 MoaA Molybdenum cofact 91.9 2.2 4.7E-05 41.7 11.3 135 39-208 44-190 (322)
124 TIGR02321 Pphn_pyruv_hyd phosp 91.8 4 8.7E-05 39.1 13.0 134 70-237 62-213 (290)
125 cd04738 DHOD_2_like Dihydrooro 91.8 1.9 4.1E-05 41.3 10.9 80 40-127 147-242 (327)
126 cd04740 DHOD_1B_like Dihydroor 91.8 3.1 6.8E-05 38.8 12.1 78 41-125 102-190 (296)
127 cd04724 Tryptophan_synthase_al 91.8 5 0.00011 36.9 13.2 102 40-148 13-134 (242)
128 TIGR01108 oadA oxaloacetate de 91.7 1.5 3.3E-05 45.8 10.7 96 102-228 92-187 (582)
129 PLN02746 hydroxymethylglutaryl 91.7 1.5 3.1E-05 43.1 10.0 149 42-228 72-235 (347)
130 PRK11320 prpB 2-methylisocitra 91.7 0.88 1.9E-05 43.6 8.4 116 78-229 73-202 (292)
131 PRK11858 aksA trans-homoaconit 91.6 6.6 0.00014 38.6 14.6 142 42-228 30-183 (378)
132 TIGR02319 CPEP_Pphonmut carbox 91.6 2.3 4.9E-05 40.9 11.0 124 71-230 65-202 (294)
133 cd04726 KGPDC_HPS 3-Keto-L-gul 91.6 2.3 5.1E-05 36.9 10.3 93 39-146 11-106 (202)
134 COG3623 SgaU Putative L-xylulo 91.5 0.87 1.9E-05 43.1 7.9 57 91-148 9-72 (287)
135 PLN03228 methylthioalkylmalate 91.4 2.1 4.6E-05 44.0 11.3 145 54-227 182-340 (503)
136 TIGR00222 panB 3-methyl-2-oxob 91.4 1.7 3.6E-05 41.3 9.8 82 108-206 100-181 (263)
137 TIGR02495 NrdG2 anaerobic ribo 91.4 8.2 0.00018 33.3 13.5 96 39-147 48-157 (191)
138 TIGR03128 RuMP_HxlA 3-hexulose 91.4 6.5 0.00014 34.4 13.0 135 42-225 68-203 (206)
139 cd04729 NanE N-acetylmannosami 91.3 1.7 3.6E-05 38.9 9.4 89 105-228 83-176 (219)
140 PLN03228 methylthioalkylmalate 91.3 1.9 4E-05 44.4 10.7 152 41-228 109-277 (503)
141 TIGR01211 ELP3 histone acetylt 91.3 1.6 3.6E-05 44.9 10.4 136 46-206 126-296 (522)
142 TIGR01361 DAHP_synth_Bsub phos 91.3 2.9 6.2E-05 39.2 11.2 136 51-228 106-257 (260)
143 PLN02951 Molybderin biosynthes 91.3 6.9 0.00015 38.4 14.3 130 39-207 91-237 (373)
144 PLN02417 dihydrodipicolinate s 91.2 0.65 1.4E-05 43.5 6.8 78 101-207 22-105 (280)
145 cd07948 DRE_TIM_HCS Saccharomy 91.1 4.1 8.8E-05 38.2 12.1 143 41-228 25-179 (262)
146 TIGR00674 dapA dihydrodipicoli 91.0 3.5 7.5E-05 38.5 11.5 143 101-276 19-199 (285)
147 PRK12344 putative alpha-isopro 90.9 2.8 6E-05 43.2 11.6 153 42-228 31-196 (524)
148 PRK14041 oxaloacetate decarbox 90.9 2.2 4.8E-05 43.5 10.7 96 102-228 96-191 (467)
149 PRK10812 putative DNAse; Provi 90.9 7.5 0.00016 36.3 13.5 169 22-241 30-208 (265)
150 PRK08649 inosine 5-monophospha 90.8 2 4.3E-05 42.4 10.1 95 70-207 118-216 (368)
151 cd02810 DHOD_DHPD_FMN Dihydroo 90.7 1.7 3.8E-05 40.2 9.1 79 102-207 112-198 (289)
152 cd02803 OYE_like_FMN_family Ol 90.5 3.2 6.9E-05 39.1 10.9 87 102-207 142-250 (327)
153 TIGR00973 leuA_bact 2-isopropy 90.4 4.2 9.1E-05 41.5 12.3 142 54-226 90-246 (494)
154 PRK09389 (R)-citramalate synth 90.4 3.5 7.6E-05 42.1 11.7 150 42-227 78-240 (488)
155 cd04731 HisF The cyclase subun 90.3 2 4.4E-05 38.8 9.1 103 25-142 71-191 (243)
156 PRK12581 oxaloacetate decarbox 90.3 2.4 5.2E-05 43.3 10.4 98 101-229 105-202 (468)
157 cd04740 DHOD_1B_like Dihydroor 90.3 1.4 3.1E-05 41.0 8.2 73 102-204 103-185 (296)
158 smart00518 AP2Ec AP endonuclea 90.3 4.2 9.1E-05 37.0 11.1 142 102-263 11-177 (273)
159 cd00019 AP2Ec AP endonuclease 90.2 1 2.2E-05 41.3 7.1 144 102-263 11-180 (279)
160 PLN02424 ketopantoate hydroxym 90.2 1.8 3.8E-05 42.5 9.0 83 108-206 121-203 (332)
161 TIGR03699 mena_SCO4550 menaqui 90.1 4.5 9.8E-05 38.6 11.7 111 39-150 73-201 (340)
162 PRK05286 dihydroorotate dehydr 90.0 1.6 3.4E-05 42.3 8.6 79 40-126 156-250 (344)
163 cd04730 NPD_like 2-Nitropropan 90.0 2.6 5.6E-05 37.5 9.4 108 47-207 22-131 (236)
164 TIGR00737 nifR3_yhdG putative 89.9 2.3 4.9E-05 40.5 9.4 134 40-211 74-227 (319)
165 PRK13398 3-deoxy-7-phosphohept 89.9 7.6 0.00016 36.6 12.8 137 50-228 107-259 (266)
166 COG0157 NadC Nicotinate-nucleo 89.8 1.4 3E-05 42.3 7.8 117 72-238 113-240 (280)
167 cd02803 OYE_like_FMN_family Ol 89.8 0.64 1.4E-05 43.8 5.5 77 102-211 229-316 (327)
168 COG0084 TatD Mg-dependent DNas 89.7 13 0.00028 35.0 14.1 170 20-240 25-207 (256)
169 cd00331 IGPS Indole-3-glycerol 89.7 2.5 5.3E-05 37.6 8.9 25 188-213 184-208 (217)
170 TIGR00262 trpA tryptophan synt 89.4 18 0.0004 33.7 18.2 176 39-254 22-223 (256)
171 PLN02321 2-isopropylmalate syn 89.3 2.2 4.8E-05 45.1 9.5 141 56-227 185-341 (632)
172 cd02940 DHPD_FMN Dihydropyrimi 89.3 4.6 9.9E-05 38.2 10.9 58 62-126 146-205 (299)
173 cd07940 DRE_TIM_IPMS 2-isoprop 89.1 3.5 7.7E-05 38.2 9.8 140 42-228 24-181 (268)
174 cd00331 IGPS Indole-3-glycerol 89.1 13 0.00028 33.0 13.1 124 83-254 72-197 (217)
175 PRK11449 putative deoxyribonuc 89.0 19 0.0004 33.5 14.5 167 22-240 29-209 (258)
176 PRK12999 pyruvate carboxylase; 89.0 3.5 7.7E-05 46.3 11.3 102 102-228 628-729 (1146)
177 cd02801 DUS_like_FMN Dihydrour 88.9 4 8.7E-05 36.1 9.7 101 100-226 66-180 (231)
178 COG2513 PrpB PEP phosphonomuta 88.9 2.8 6E-05 40.4 9.1 124 70-229 65-202 (289)
179 cd00946 FBP_aldolase_IIA Class 88.7 9.2 0.0002 37.7 12.7 136 73-224 77-230 (345)
180 PRK08898 coproporphyrinogen II 88.7 6.8 0.00015 38.5 12.0 124 52-203 72-206 (394)
181 PRK09389 (R)-citramalate synth 88.7 8.1 0.00017 39.5 12.8 143 42-229 28-182 (488)
182 PRK14042 pyruvate carboxylase 88.6 3.9 8.4E-05 43.0 10.7 97 101-228 96-192 (596)
183 PRK10415 tRNA-dihydrouridine s 88.6 3.1 6.7E-05 39.9 9.3 80 57-142 106-192 (321)
184 TIGR00423 radical SAM domain p 88.4 13 0.00027 35.2 13.2 109 39-148 37-163 (309)
185 cd04732 HisA HisA. Phosphorib 88.4 3.5 7.6E-05 36.7 9.0 97 102-236 30-127 (234)
186 PRK01130 N-acetylmannosamine-6 88.2 2.9 6.3E-05 37.3 8.4 97 70-211 105-207 (221)
187 PRK09997 hydroxypyruvate isome 88.2 2.1 4.6E-05 38.8 7.6 48 95-148 11-58 (258)
188 PRK12999 pyruvate carboxylase; 88.0 5 0.00011 45.2 11.6 159 39-230 625-791 (1146)
189 PF13714 PEP_mutase: Phosphoen 87.9 2.4 5.2E-05 39.4 7.8 128 69-229 55-191 (238)
190 PRK13523 NADPH dehydrogenase N 87.8 9.2 0.0002 37.1 12.1 116 71-207 82-249 (337)
191 PRK07259 dihydroorotate dehydr 87.8 2.2 4.7E-05 40.1 7.6 74 102-204 105-188 (301)
192 PRK08508 biotin synthase; Prov 87.8 11 0.00024 35.3 12.3 98 70-204 75-185 (279)
193 PRK05926 hypothetical protein; 87.6 15 0.00033 36.1 13.6 119 58-202 119-253 (370)
194 PF01261 AP_endonuc_2: Xylose 87.6 3.7 7.9E-05 34.7 8.2 148 107-266 1-171 (213)
195 PRK05718 keto-hydroxyglutarate 87.6 5.2 0.00011 36.5 9.7 94 70-213 95-190 (212)
196 PRK06801 hypothetical protein; 87.5 22 0.00049 33.9 14.3 174 42-236 5-210 (286)
197 PRK15452 putative protease; Pr 87.4 9.1 0.0002 38.8 12.1 88 39-142 12-107 (443)
198 CHL00200 trpA tryptophan synth 87.4 9.5 0.00021 35.9 11.6 106 39-151 27-152 (263)
199 PRK04302 triosephosphate isome 87.4 5.8 0.00013 35.8 9.8 116 103-253 74-197 (223)
200 TIGR03581 EF_0839 conserved hy 87.3 7.4 0.00016 36.4 10.5 95 103-227 137-233 (236)
201 PLN02591 tryptophan synthase 87.2 1.8 4E-05 40.5 6.6 105 39-150 14-138 (250)
202 cd00953 KDG_aldolase KDG (2-ke 87.1 3.9 8.5E-05 38.3 8.8 110 99-239 18-131 (279)
203 PRK05718 keto-hydroxyglutarate 87.1 2.5 5.4E-05 38.6 7.3 116 74-235 7-134 (212)
204 PRK13957 indole-3-glycerol-pho 87.0 6.6 0.00014 36.9 10.2 110 107-256 117-228 (247)
205 TIGR01182 eda Entner-Doudoroff 86.9 7.3 0.00016 35.5 10.2 94 69-212 87-182 (204)
206 TIGR01858 tag_bisphos_ald clas 86.8 25 0.00053 33.7 14.1 138 105-257 86-230 (282)
207 PF09370 TIM-br_sig_trns: TIM- 86.4 3.3 7.2E-05 39.5 7.9 70 102-206 96-178 (268)
208 TIGR01362 KDO8P_synth 3-deoxy- 86.4 3.2 7E-05 39.4 7.8 147 46-228 85-249 (258)
209 TIGR00736 nifR3_rel_arch TIM-b 86.4 12 0.00026 34.7 11.5 120 68-228 53-189 (231)
210 cd02930 DCR_FMN 2,4-dienoyl-Co 86.4 10 0.00022 36.7 11.4 22 183-204 222-243 (353)
211 cd04739 DHOD_like Dihydroorota 85.9 19 0.00041 34.6 13.0 80 40-127 111-201 (325)
212 PRK02083 imidazole glycerol ph 85.8 7.8 0.00017 35.5 9.9 103 25-142 74-195 (253)
213 PRK07998 gatY putative fructos 85.8 21 0.00045 34.2 13.1 190 42-257 5-229 (283)
214 PRK08318 dihydropyrimidine deh 85.8 13 0.00028 36.7 12.1 60 60-126 144-205 (420)
215 PRK09989 hypothetical protein; 85.6 1.5 3.2E-05 39.9 5.1 42 102-147 16-57 (258)
216 PRK07565 dihydroorotate dehydr 85.5 19 0.00042 34.4 12.9 26 102-127 178-203 (334)
217 PLN02446 (5-phosphoribosyl)-5- 85.4 6.3 0.00014 37.4 9.3 47 189-237 95-141 (262)
218 TIGR00973 leuA_bact 2-isopropy 85.4 11 0.00024 38.6 11.6 146 42-228 27-184 (494)
219 PRK15108 biotin synthase; Prov 85.3 5.6 0.00012 38.6 9.1 131 66-225 75-207 (345)
220 cd08574 GDPD_GDE_2_3_6 Glycero 84.9 8.5 0.00018 35.4 9.8 123 42-206 115-252 (252)
221 PRK13802 bifunctional indole-3 84.9 11 0.00024 40.4 11.7 111 107-256 126-238 (695)
222 PRK09195 gatY tagatose-bisphos 84.8 38 0.00082 32.4 14.5 138 105-257 88-232 (284)
223 PRK08185 hypothetical protein; 84.7 31 0.00067 33.0 13.7 174 57-257 42-228 (283)
224 PF04055 Radical_SAM: Radical 84.6 9.1 0.0002 30.5 8.8 96 39-146 29-143 (166)
225 PRK04302 triosephosphate isome 84.5 13 0.00029 33.4 10.7 91 70-206 101-203 (223)
226 PRK10550 tRNA-dihydrouridine s 84.4 9.3 0.0002 36.7 10.1 78 58-142 105-192 (312)
227 PF00215 OMPdecase: Orotidine 84.0 2.5 5.4E-05 38.1 5.7 97 39-143 11-111 (226)
228 PF00218 IGPS: Indole-3-glycer 83.9 8.2 0.00018 36.3 9.3 115 103-256 119-236 (254)
229 cd07941 DRE_TIM_LeuA3 Desulfob 83.8 9.3 0.0002 35.7 9.6 148 42-226 24-187 (273)
230 TIGR00735 hisF imidazoleglycer 83.6 13 0.00027 34.3 10.3 99 102-238 31-130 (254)
231 cd02932 OYE_YqiM_FMN Old yello 83.6 3.5 7.5E-05 39.5 6.8 40 102-141 242-287 (336)
232 PRK12737 gatY tagatose-bisphos 83.4 29 0.00062 33.2 12.9 137 104-257 87-232 (284)
233 PRK10415 tRNA-dihydrouridine s 83.4 14 0.00031 35.5 10.9 94 108-228 84-193 (321)
234 PRK07028 bifunctional hexulose 83.3 25 0.00054 34.9 12.9 128 71-242 95-229 (430)
235 PF00290 Trp_syntA: Tryptophan 83.3 18 0.0004 34.1 11.3 148 39-226 22-191 (259)
236 cd07942 DRE_TIM_LeuA Mycobacte 83.2 16 0.00035 34.8 11.1 158 43-229 81-265 (284)
237 cd01335 Radical_SAM Radical SA 83.2 23 0.00051 28.8 12.1 99 42-152 33-147 (204)
238 cd07945 DRE_TIM_CMS Leptospira 83.0 13 0.00028 35.1 10.4 142 44-228 26-185 (280)
239 TIGR01182 eda Entner-Doudoroff 82.9 5.1 0.00011 36.5 7.3 68 102-206 21-88 (204)
240 TIGR03700 mena_SCO4494 putativ 82.9 31 0.00067 33.4 13.1 114 61-200 103-232 (351)
241 PF01081 Aldolase: KDPG and KH 82.6 4.4 9.6E-05 36.7 6.7 69 101-206 20-88 (196)
242 TIGR03239 GarL 2-dehydro-3-deo 82.6 5.6 0.00012 37.1 7.6 68 105-205 24-91 (249)
243 PRK08445 hypothetical protein; 82.6 30 0.00064 33.7 12.9 101 49-149 85-201 (348)
244 TIGR01501 MthylAspMutase methy 82.5 5.5 0.00012 34.1 6.9 94 39-145 17-112 (134)
245 TIGR00977 LeuA_rel 2-isopropyl 82.4 13 0.00028 38.4 10.8 119 73-222 125-247 (526)
246 cd00947 TBP_aldolase_IIB Tagat 82.3 47 0.001 31.7 14.8 136 105-257 83-226 (276)
247 COG1060 ThiH Thiamine biosynth 82.3 2.2 4.7E-05 42.2 5.0 157 17-202 46-216 (370)
248 smart00642 Aamy Alpha-amylase 82.3 3.4 7.3E-05 36.0 5.7 49 106-154 24-94 (166)
249 PRK13307 bifunctional formalde 82.3 16 0.00035 36.5 11.1 38 188-228 341-378 (391)
250 PRK13523 NADPH dehydrogenase N 82.2 2.4 5.2E-05 41.1 5.2 119 70-231 193-325 (337)
251 cd02932 OYE_YqiM_FMN Old yello 82.0 17 0.00038 34.7 10.9 23 183-205 239-261 (336)
252 PRK05927 hypothetical protein; 82.0 35 0.00076 33.4 13.2 89 59-148 98-203 (350)
253 TIGR02026 BchE magnesium-proto 81.9 38 0.00081 34.4 13.8 120 54-204 240-372 (497)
254 cd04731 HisF The cyclase subun 81.9 11 0.00024 34.0 9.2 96 102-238 28-127 (243)
255 PRK10550 tRNA-dihydrouridine s 81.5 20 0.00043 34.5 11.1 75 108-207 82-170 (312)
256 PRK09722 allulose-6-phosphate 81.5 17 0.00038 33.6 10.4 143 30-225 62-216 (229)
257 PRK13586 1-(5-phosphoribosyl)- 81.5 11 0.00024 34.6 9.1 92 106-235 35-126 (232)
258 PRK08091 ribulose-phosphate 3- 81.4 16 0.00035 33.9 10.1 79 1-94 47-133 (228)
259 TIGR01210 conserved hypothetic 81.2 20 0.00042 34.4 10.9 133 42-206 54-209 (313)
260 PTZ00170 D-ribulose-5-phosphat 81.2 38 0.00082 30.9 12.4 145 30-226 68-219 (228)
261 PF04476 DUF556: Protein of un 81.0 50 0.0011 31.1 13.2 149 42-228 69-234 (235)
262 PRK07360 FO synthase subunit 2 80.9 43 0.00092 32.8 13.4 200 39-265 92-331 (371)
263 smart00481 POLIIIAc DNA polyme 80.9 3.7 8.1E-05 29.8 4.7 46 100-148 14-59 (67)
264 PRK02083 imidazole glycerol ph 80.9 15 0.00034 33.5 9.8 99 102-238 31-130 (253)
265 PRK08446 coproporphyrinogen II 80.7 8.1 0.00017 37.3 8.2 116 27-145 54-180 (350)
266 TIGR00676 fadh2 5,10-methylene 80.6 38 0.00083 31.6 12.5 140 41-206 15-165 (272)
267 TIGR01859 fruc_bis_ald_ fructo 80.4 22 0.00048 33.7 10.9 133 105-257 88-230 (282)
268 PRK07709 fructose-bisphosphate 80.3 28 0.00061 33.3 11.6 195 42-257 5-233 (285)
269 TIGR03822 AblA_like_2 lysine-2 80.3 49 0.0011 31.7 13.3 169 41-239 122-308 (321)
270 PRK11815 tRNA-dihydrouridine s 80.2 8.9 0.00019 37.0 8.3 80 104-207 80-173 (333)
271 TIGR01769 GGGP geranylgeranylg 80.1 5.1 0.00011 36.6 6.3 68 101-204 134-204 (205)
272 cd07938 DRE_TIM_HMGL 3-hydroxy 80.1 15 0.00032 34.6 9.5 148 41-228 23-187 (274)
273 TIGR03849 arch_ComA phosphosul 80.0 20 0.00043 33.7 10.2 181 41-276 41-236 (237)
274 PF04131 NanE: Putative N-acet 80.0 7.1 0.00015 35.6 7.0 116 40-206 54-174 (192)
275 PRK14024 phosphoribosyl isomer 79.9 22 0.00047 32.6 10.4 101 25-142 75-188 (241)
276 cd04723 HisA_HisF Phosphoribos 79.8 12 0.00027 34.0 8.7 100 102-240 36-135 (233)
277 PRK12857 fructose-1,6-bisphosp 79.7 59 0.0013 31.1 14.1 136 105-257 88-232 (284)
278 TIGR00587 nfo apurinic endonuc 79.6 28 0.00062 32.2 11.2 148 102-263 12-181 (274)
279 PRK13585 1-(5-phosphoribosyl)- 79.4 19 0.0004 32.4 9.7 143 24-215 75-231 (241)
280 cd02933 OYE_like_FMN Old yello 79.4 52 0.0011 31.8 13.3 82 105-204 156-260 (338)
281 cd06557 KPHMT-like Ketopantoat 79.3 8.9 0.00019 36.1 7.7 75 110-207 28-113 (254)
282 TIGR00977 LeuA_rel 2-isopropyl 79.2 9.6 0.00021 39.4 8.6 151 42-228 27-192 (526)
283 cd04739 DHOD_like Dihydroorota 79.1 7.9 0.00017 37.2 7.6 77 102-207 113-197 (325)
284 COG0413 PanB Ketopantoate hydr 79.0 13 0.00028 35.6 8.7 87 103-206 96-182 (268)
285 PRK10558 alpha-dehydro-beta-de 78.9 6.5 0.00014 36.8 6.7 68 105-205 31-98 (256)
286 PF01212 Beta_elim_lyase: Beta 78.8 5.3 0.00012 37.9 6.2 78 39-122 107-193 (290)
287 TIGR00737 nifR3_yhdG putative 78.8 19 0.00041 34.2 10.0 103 101-229 75-192 (319)
288 COG0635 HemN Coproporphyrinoge 78.8 35 0.00076 34.2 12.2 126 53-206 87-225 (416)
289 cd04722 TIM_phosphate_binding 78.6 36 0.00078 28.0 12.7 96 42-142 13-111 (200)
290 TIGR00126 deoC deoxyribose-pho 78.5 20 0.00044 32.7 9.7 123 39-205 16-152 (211)
291 cd02874 GH18_CFLE_spore_hydrol 78.3 7.5 0.00016 36.5 7.0 93 45-141 17-128 (313)
292 PRK09250 fructose-bisphosphate 78.3 26 0.00056 34.7 10.9 85 56-143 129-230 (348)
293 COG0329 DapA Dihydrodipicolina 78.2 48 0.001 31.6 12.5 110 102-238 26-139 (299)
294 PRK07114 keto-hydroxyglutarate 78.1 5 0.00011 37.1 5.6 91 75-206 8-99 (222)
295 PRK13585 1-(5-phosphoribosyl)- 78.1 18 0.0004 32.5 9.3 97 102-236 33-130 (241)
296 PF01301 Glyco_hydro_35: Glyco 78.1 4.8 0.0001 38.7 5.7 53 100-152 23-85 (319)
297 PRK06015 keto-hydroxyglutarate 78.0 9.4 0.0002 34.8 7.3 69 101-206 16-84 (201)
298 cd06543 GH18_PF-ChiA-like PF-C 77.8 6.1 0.00013 37.7 6.3 74 69-142 53-136 (294)
299 PRK13125 trpA tryptophan synth 77.8 10 0.00022 34.8 7.6 22 189-211 198-219 (244)
300 CHL00073 chlN photochlorophyll 77.8 31 0.00066 35.3 11.6 183 39-268 206-407 (457)
301 cd00959 DeoC 2-deoxyribose-5-p 77.7 5.9 0.00013 35.3 5.9 129 39-205 15-151 (203)
302 cd02940 DHPD_FMN Dihydropyrimi 77.7 16 0.00036 34.4 9.2 74 102-204 114-199 (299)
303 PRK10425 DNase TatD; Provision 77.7 61 0.0013 30.2 14.3 169 22-240 25-205 (258)
304 cd08205 RuBisCO_IV_RLP Ribulos 77.7 10 0.00022 37.3 8.0 85 99-206 144-231 (367)
305 PRK13758 anaerobic sulfatase-m 77.6 63 0.0014 30.9 13.2 79 56-145 60-159 (370)
306 cd02812 PcrB_like PcrB_like pr 77.6 7.5 0.00016 35.9 6.6 74 100-211 134-209 (219)
307 TIGR00238 KamA family protein. 77.5 38 0.00083 32.7 11.8 128 41-200 145-283 (331)
308 PRK05985 cytosine deaminase; P 77.4 9.8 0.00021 36.7 7.7 77 69-149 190-271 (391)
309 PRK13587 1-(5-phosphoribosyl)- 77.4 31 0.00068 31.6 10.6 114 23-152 74-201 (234)
310 PRK02227 hypothetical protein; 77.2 54 0.0012 30.9 12.2 153 41-229 68-234 (238)
311 PRK05286 dihydroorotate dehydr 77.1 19 0.0004 34.9 9.5 80 102-207 155-247 (344)
312 PRK08255 salicylyl-CoA 5-hydro 77.1 12 0.00026 40.0 8.9 24 183-206 636-659 (765)
313 PF02548 Pantoate_transf: Keto 77.1 20 0.00043 34.1 9.4 76 108-206 30-116 (261)
314 PRK06552 keto-hydroxyglutarate 76.8 16 0.00034 33.4 8.4 118 75-235 6-135 (213)
315 COG0119 LeuA Isopropylmalate/h 76.8 50 0.0011 33.2 12.6 152 42-222 81-240 (409)
316 cd02809 alpha_hydroxyacid_oxid 76.8 22 0.00047 33.6 9.6 76 99-208 127-203 (299)
317 PRK10128 2-keto-3-deoxy-L-rham 76.6 10 0.00022 35.9 7.3 89 71-204 8-96 (267)
318 PRK14057 epimerase; Provisiona 76.6 15 0.00034 34.7 8.5 59 27-93 75-146 (254)
319 PRK08610 fructose-bisphosphate 76.6 41 0.00089 32.3 11.5 195 42-257 5-233 (286)
320 TIGR01304 IMP_DH_rel_2 IMP deh 76.0 22 0.00047 35.3 9.8 71 68-146 117-191 (369)
321 PRK13125 trpA tryptophan synth 75.9 64 0.0014 29.5 19.5 176 39-254 16-210 (244)
322 PRK12677 xylose isomerase; Pro 75.6 13 0.00027 36.9 8.0 46 102-147 32-84 (384)
323 PF01116 F_bP_aldolase: Fructo 75.4 40 0.00086 32.2 11.0 152 59-228 17-203 (287)
324 TIGR00742 yjbN tRNA dihydrouri 75.2 22 0.00048 34.3 9.4 82 57-142 96-192 (318)
325 cd04738 DHOD_2_like Dihydrooro 75.2 22 0.00048 34.1 9.4 81 102-207 146-238 (327)
326 PRK06256 biotin synthase; Vali 75.1 33 0.00072 32.5 10.5 70 72-145 151-231 (336)
327 PRK06552 keto-hydroxyglutarate 75.1 18 0.0004 32.9 8.4 96 66-212 92-189 (213)
328 PTZ00170 D-ribulose-5-phosphat 74.9 23 0.00051 32.3 9.1 77 99-207 17-97 (228)
329 TIGR01235 pyruv_carbox pyruvat 74.8 9.4 0.0002 43.1 7.6 81 103-212 691-771 (1143)
330 PRK08745 ribulose-phosphate 3- 74.7 57 0.0012 30.0 11.6 146 22-224 57-215 (223)
331 cd04732 HisA HisA. Phosphorib 74.7 11 0.00024 33.5 6.8 140 25-213 73-226 (234)
332 PF07071 DUF1341: Protein of u 74.7 8.4 0.00018 35.7 6.0 71 103-203 137-207 (218)
333 TIGR01740 pyrF orotidine 5'-ph 74.6 13 0.00027 33.4 7.1 93 39-143 9-102 (213)
334 PRK09427 bifunctional indole-3 74.5 14 0.00031 37.5 8.2 93 107-238 125-218 (454)
335 PRK08318 dihydropyrimidine deh 74.2 18 0.00038 35.8 8.6 74 101-203 113-198 (420)
336 PF01026 TatD_DNase: TatD rela 74.2 42 0.0009 30.7 10.6 170 22-240 24-207 (255)
337 PLN02389 biotin synthase 73.7 71 0.0015 31.7 12.7 70 70-148 153-231 (379)
338 COG1105 FruK Fructose-1-phosph 73.7 31 0.00067 33.6 9.9 177 26-232 101-308 (310)
339 TIGR01949 AroFGH_arch predicte 73.6 36 0.00079 31.3 10.1 156 20-214 67-235 (258)
340 PLN02617 imidazole glycerol ph 73.5 39 0.00084 35.2 11.2 112 106-238 272-393 (538)
341 cd00945 Aldolase_Class_I Class 73.5 20 0.00043 30.2 7.8 72 100-207 12-87 (201)
342 TIGR00167 cbbA ketose-bisphosp 73.5 51 0.0011 31.6 11.3 195 42-257 5-236 (288)
343 COG0535 Predicted Fe-S oxidore 73.4 74 0.0016 29.3 12.2 127 43-206 56-194 (347)
344 PRK00125 pyrF orotidine 5'-pho 73.4 16 0.00035 34.8 7.9 94 42-143 42-141 (278)
345 PRK13396 3-deoxy-7-phosphohept 72.9 13 0.00028 36.7 7.3 54 187-240 288-347 (352)
346 PRK08645 bifunctional homocyst 72.9 55 0.0012 34.3 12.3 141 40-206 337-499 (612)
347 PRK01122 potassium-transportin 72.9 9 0.0002 40.9 6.6 62 68-145 446-509 (679)
348 PRK11815 tRNA-dihydrouridine s 72.8 14 0.0003 35.7 7.4 81 57-141 106-201 (333)
349 PRK09234 fbiC FO synthase; Rev 72.7 48 0.001 36.4 12.1 117 57-200 577-710 (843)
350 PRK13307 bifunctional formalde 72.7 21 0.00045 35.8 8.7 95 39-146 183-279 (391)
351 PLN02826 dihydroorotate dehydr 72.6 52 0.0011 33.1 11.6 131 39-204 202-369 (409)
352 PRK05660 HemN family oxidoredu 72.5 20 0.00043 35.0 8.5 119 27-145 61-189 (378)
353 cd02875 GH18_chitobiase Chitob 72.4 8.8 0.00019 37.4 6.0 67 73-141 67-140 (358)
354 PRK13347 coproporphyrinogen II 72.4 18 0.00039 36.3 8.3 121 27-147 106-236 (453)
355 PRK13745 anaerobic sulfatase-m 72.2 45 0.00097 32.9 11.0 96 39-145 49-168 (412)
356 TIGR00433 bioB biotin syntheta 72.2 50 0.0011 30.4 10.7 148 70-253 98-268 (296)
357 PRK14847 hypothetical protein; 72.1 58 0.0012 32.0 11.5 143 55-228 125-295 (333)
358 PRK07379 coproporphyrinogen II 72.0 19 0.00042 35.4 8.4 119 27-145 69-197 (400)
359 PRK12595 bifunctional 3-deoxy- 71.9 35 0.00076 33.6 10.1 138 49-228 197-350 (360)
360 cd04729 NanE N-acetylmannosami 71.9 21 0.00046 31.8 7.9 91 71-205 110-206 (219)
361 PRK14010 potassium-transportin 71.4 10 0.00022 40.4 6.7 63 67-145 441-505 (673)
362 cd06545 GH18_3CO4_chitinase Th 71.3 12 0.00027 34.1 6.4 71 70-141 46-126 (253)
363 PF01136 Peptidase_U32: Peptid 71.2 26 0.00056 31.3 8.3 33 102-144 3-35 (233)
364 PRK12738 kbaY tagatose-bisphos 71.2 58 0.0012 31.3 11.1 167 42-230 5-203 (286)
365 TIGR00539 hemN_rel putative ox 71.1 18 0.00039 34.9 7.8 118 27-145 54-182 (360)
366 cd02931 ER_like_FMN Enoate red 71.0 25 0.00053 34.6 8.8 25 183-207 250-274 (382)
367 PLN02951 Molybderin biosynthes 71.0 85 0.0018 30.8 12.5 114 66-206 89-206 (373)
368 cd04734 OYE_like_3_FMN Old yel 70.9 20 0.00044 34.6 8.1 56 70-126 192-254 (343)
369 COG5016 Pyruvate/oxaloacetate 70.5 8.6 0.00019 39.1 5.5 82 54-142 112-197 (472)
370 cd06556 ICL_KPHMT Members of t 70.5 29 0.00063 32.3 8.7 137 111-272 29-216 (240)
371 PRK00748 1-(5-phosphoribosyl)- 70.2 42 0.00092 29.8 9.5 102 24-141 73-187 (233)
372 TIGR01302 IMP_dehydrog inosine 70.2 10 0.00022 38.2 6.0 67 107-206 279-357 (450)
373 TIGR01235 pyruv_carbox pyruvat 70.0 38 0.00081 38.5 10.9 103 101-228 625-727 (1143)
374 TIGR00735 hisF imidazoleglycer 70.0 90 0.002 28.6 13.0 109 25-142 74-197 (254)
375 PF01207 Dus: Dihydrouridine s 69.8 23 0.00051 33.7 8.1 105 100-229 65-183 (309)
376 PF10566 Glyco_hydro_97: Glyco 69.7 8.7 0.00019 36.7 5.1 109 101-234 32-152 (273)
377 PRK07226 fructose-bisphosphate 69.7 31 0.00066 32.1 8.7 156 21-213 71-238 (267)
378 PF02548 Pantoate_transf: Keto 69.7 17 0.00038 34.6 7.1 138 42-206 27-183 (261)
379 COG3010 NanE Putative N-acetyl 69.6 23 0.00049 33.1 7.6 117 43-206 88-210 (229)
380 PRK05437 isopentenyl pyrophosp 69.5 77 0.0017 31.0 11.8 76 39-123 136-219 (352)
381 PLN02428 lipoic acid synthase 69.5 30 0.00065 34.2 8.9 75 104-204 195-281 (349)
382 PRK09061 D-glutamate deacylase 69.4 30 0.00064 35.3 9.2 106 43-154 171-286 (509)
383 COG0134 TrpC Indole-3-glycerol 69.3 39 0.00085 32.1 9.4 111 107-256 122-234 (254)
384 TIGR01037 pyrD_sub1_fam dihydr 69.3 40 0.00086 31.5 9.5 71 106-205 108-189 (300)
385 cd04725 OMP_decarboxylase_like 69.3 19 0.00042 32.4 7.1 93 39-143 9-102 (216)
386 TIGR02311 HpaI 2,4-dihydroxyhe 69.2 22 0.00048 33.0 7.6 69 104-205 23-91 (249)
387 PRK05835 fructose-bisphosphate 69.2 71 0.0015 31.1 11.3 191 43-254 5-230 (307)
388 COG1038 PycA Pyruvate carboxyl 69.2 14 0.00029 40.8 6.9 69 71-148 68-138 (1149)
389 PRK08208 coproporphyrinogen II 69.1 27 0.00058 34.8 8.7 116 27-145 94-223 (430)
390 PRK07565 dihydroorotate dehydr 69.1 71 0.0015 30.6 11.3 77 102-207 115-199 (334)
391 cd04734 OYE_like_3_FMN Old yel 69.0 27 0.00059 33.8 8.5 22 183-204 226-248 (343)
392 TIGR02127 pyrF_sub2 orotidine 69.0 61 0.0013 30.5 10.6 94 42-143 42-140 (261)
393 PRK08883 ribulose-phosphate 3- 68.9 33 0.00072 31.4 8.6 147 28-225 59-212 (220)
394 cd00740 MeTr MeTr subgroup of 68.9 51 0.0011 30.8 10.0 96 42-140 31-147 (252)
395 COG0269 SgbH 3-hexulose-6-phos 68.8 72 0.0016 29.7 10.7 131 42-226 72-210 (217)
396 PRK00278 trpC indole-3-glycero 68.8 45 0.00099 31.1 9.7 25 188-213 223-247 (260)
397 TIGR00010 hydrolase, TatD fami 68.8 50 0.0011 29.1 9.5 46 189-240 158-203 (252)
398 PLN02540 methylenetetrahydrofo 68.7 59 0.0013 34.2 11.3 137 54-206 29-177 (565)
399 cd00381 IMPDH IMPDH: The catal 68.5 24 0.00052 34.0 8.0 95 68-205 68-163 (325)
400 PRK08444 hypothetical protein; 68.4 1.2E+02 0.0027 29.6 13.9 95 54-148 97-207 (353)
401 PRK09240 thiH thiamine biosynt 68.4 1.1E+02 0.0024 29.9 12.7 106 39-156 105-227 (371)
402 PRK09249 coproporphyrinogen II 68.3 22 0.00048 35.5 8.0 119 27-145 105-233 (453)
403 TIGR03572 WbuZ glycosyl amidat 68.3 60 0.0013 29.1 10.1 105 25-142 74-195 (232)
404 TIGR03471 HpnJ hopanoid biosyn 68.0 1.4E+02 0.003 29.9 14.0 117 54-204 246-372 (472)
405 cd01011 nicotinamidase Nicotin 67.8 15 0.00033 32.3 6.1 65 75-146 129-195 (196)
406 PRK15108 biotin synthase; Prov 67.8 1E+02 0.0022 30.0 12.1 68 70-148 111-189 (345)
407 PRK07084 fructose-bisphosphate 67.7 82 0.0018 30.9 11.4 202 41-263 10-254 (321)
408 PF00977 His_biosynth: Histidi 67.7 11 0.00024 34.3 5.3 92 111-240 39-131 (229)
409 cd01299 Met_dep_hydrolase_A Me 67.1 31 0.00068 32.1 8.3 113 23-202 53-197 (342)
410 cd04735 OYE_like_4_FMN Old yel 67.0 27 0.00059 33.8 8.1 25 183-207 233-257 (353)
411 cd00598 GH18_chitinase-like Th 66.9 36 0.00079 29.3 8.2 119 2-141 2-135 (210)
412 TIGR02631 xylA_Arthro xylose i 66.8 12 0.00027 36.9 5.8 46 102-147 33-85 (382)
413 TIGR01497 kdpB K+-transporting 66.8 15 0.00032 39.2 6.7 63 67-145 446-510 (675)
414 PLN02591 tryptophan synthase 66.6 41 0.00088 31.5 8.9 63 71-145 94-158 (250)
415 PRK06267 hypothetical protein; 66.6 62 0.0014 31.4 10.5 112 53-204 79-201 (350)
416 TIGR02129 hisA_euk phosphoribo 66.3 45 0.00097 31.6 9.1 94 105-238 42-135 (253)
417 cd08210 RLP_RrRLP Ribulose bis 66.1 19 0.00041 35.5 6.9 115 101-238 141-286 (364)
418 cd06542 GH18_EndoS-like Endo-b 65.8 31 0.00066 31.3 7.7 94 47-141 21-139 (255)
419 PRK13587 1-(5-phosphoribosyl)- 65.7 50 0.0011 30.3 9.2 88 113-239 44-132 (234)
420 TIGR01919 hisA-trpF 1-(5-phosp 65.7 60 0.0013 30.0 9.8 90 39-141 85-190 (243)
421 PTZ00331 alpha/beta hydrolase; 65.6 14 0.00031 33.2 5.4 64 77-147 139-204 (212)
422 PRK00311 panB 3-methyl-2-oxobu 65.4 30 0.00065 32.8 7.8 117 110-250 31-195 (264)
423 cd04733 OYE_like_2_FMN Old yel 65.3 48 0.0011 31.8 9.4 82 107-207 155-258 (338)
424 PRK09196 fructose-1,6-bisphosp 65.3 11 0.00024 37.1 5.1 107 57-202 95-274 (347)
425 PRK08255 salicylyl-CoA 5-hydro 65.2 18 0.00039 38.7 6.9 123 70-232 602-738 (765)
426 PRK00507 deoxyribose-phosphate 65.0 27 0.00059 32.1 7.2 146 20-204 54-207 (221)
427 PRK08323 phenylhydantoinase; V 64.8 84 0.0018 30.8 11.1 97 52-153 140-262 (459)
428 cd04733 OYE_like_2_FMN Old yel 64.7 19 0.00041 34.5 6.4 23 103-125 238-260 (338)
429 PRK07709 fructose-bisphosphate 64.7 32 0.0007 32.9 7.9 99 71-207 119-235 (285)
430 TIGR01768 GGGP-family geranylg 64.6 32 0.0007 31.9 7.7 17 188-204 191-207 (223)
431 PF03644 Glyco_hydro_85: Glyco 64.5 8.1 0.00018 37.2 3.9 92 51-145 26-133 (311)
432 COG4130 Predicted sugar epimer 64.5 8.1 0.00018 36.4 3.7 47 102-148 18-67 (272)
433 PRK02261 methylaspartate mutas 64.4 25 0.00054 29.8 6.4 94 39-145 19-114 (137)
434 TIGR00007 phosphoribosylformim 64.4 67 0.0015 28.6 9.6 103 25-142 72-187 (230)
435 TIGR00126 deoC deoxyribose-pho 64.3 9.3 0.0002 34.9 4.0 141 22-202 52-201 (211)
436 PRK13209 L-xylulose 5-phosphat 64.2 33 0.00072 31.2 7.7 109 40-151 23-159 (283)
437 PRK07998 gatY putative fructos 64.0 36 0.00078 32.6 8.1 103 71-207 116-231 (283)
438 cd00452 KDPG_aldolase KDPG and 63.9 38 0.00081 29.7 7.7 22 188-210 154-175 (190)
439 cd01948 EAL EAL domain. This d 63.6 17 0.00037 31.4 5.5 80 22-118 142-227 (240)
440 PF00128 Alpha-amylase: Alpha 63.5 10 0.00022 33.8 4.1 50 103-152 6-74 (316)
441 smart00052 EAL Putative diguan 63.4 24 0.00052 30.6 6.4 79 22-118 143-228 (241)
442 TIGR03551 F420_cofH 7,8-dideme 63.1 16 0.00035 35.0 5.7 111 65-200 68-194 (343)
443 TIGR00542 hxl6Piso_put hexulos 63.0 80 0.0017 28.8 10.0 82 69-150 51-153 (279)
444 KOG2949 Ketopantoate hydroxyme 62.8 41 0.00089 32.1 8.0 160 17-206 31-206 (306)
445 PHA02754 hypothetical protein; 62.5 5.5 0.00012 30.1 1.8 20 40-59 20-39 (67)
446 TIGR01304 IMP_DH_rel_2 IMP deh 62.5 84 0.0018 31.2 10.6 106 104-254 102-212 (369)
447 cd00958 DhnA Class I fructose- 62.4 68 0.0015 28.7 9.3 133 42-213 81-221 (235)
448 TIGR00970 leuA_yeast 2-isoprop 62.4 1E+02 0.0022 32.3 11.6 145 56-229 120-293 (564)
449 PRK06256 biotin synthase; Vali 62.3 51 0.0011 31.2 8.9 99 71-205 127-236 (336)
450 PLN02460 indole-3-glycerol-pho 62.1 14 0.0003 36.4 5.1 115 103-256 191-315 (338)
451 PRK05904 coproporphyrinogen II 62.1 42 0.00091 32.7 8.4 116 27-145 59-185 (353)
452 TIGR01521 FruBisAldo_II_B fruc 62.1 19 0.00041 35.6 6.0 111 57-202 93-272 (347)
453 PRK09140 2-dehydro-3-deoxy-6-p 62.0 35 0.00076 30.8 7.3 70 101-206 22-91 (206)
454 PRK08673 3-deoxy-7-phosphohept 61.9 1.5E+02 0.0033 29.1 12.1 42 187-228 279-325 (335)
455 cd02072 Glm_B12_BD B12 binding 61.8 21 0.00045 30.4 5.4 94 39-145 15-110 (128)
456 PRK13399 fructose-1,6-bisphosp 61.6 14 0.00031 36.4 5.0 110 57-202 95-274 (347)
457 smart00518 AP2Ec AP endonuclea 61.5 72 0.0016 28.9 9.4 97 44-140 13-125 (273)
458 PRK13306 ulaD 3-keto-L-gulonat 61.3 23 0.0005 32.2 6.0 93 39-144 14-107 (216)
459 TIGR02617 tnaA_trp_ase tryptop 61.1 34 0.00073 35.2 7.7 101 39-141 168-292 (467)
460 cd04747 OYE_like_5_FMN Old yel 60.9 48 0.001 32.6 8.6 22 183-204 233-254 (361)
461 PLN02858 fructose-bisphosphate 60.8 1E+02 0.0022 35.8 12.2 166 42-228 1101-1297(1378)
462 TIGR00538 hemN oxygen-independ 60.5 46 0.00099 33.3 8.5 108 39-146 117-234 (455)
463 PRK12313 glycogen branching en 60.5 19 0.0004 37.8 6.0 50 103-152 173-242 (633)
464 PRK06852 aldolase; Validated 60.5 1.2E+02 0.0026 29.5 11.0 144 56-214 96-273 (304)
465 PRK15447 putative protease; Pr 60.5 39 0.00085 32.1 7.7 86 42-145 16-109 (301)
466 cd00530 PTE Phosphotriesterase 60.4 1.4E+02 0.003 27.4 12.4 53 189-242 192-248 (293)
467 cd01315 L-HYD_ALN L-Hydantoina 60.4 1.3E+02 0.0029 29.4 11.6 125 23-152 81-263 (447)
468 PRK07114 keto-hydroxyglutarate 60.4 11 0.00024 34.8 3.9 97 66-211 95-193 (222)
469 PRK15447 putative protease; Pr 60.4 41 0.00089 32.0 7.8 122 101-250 15-152 (301)
470 cd04726 KGPDC_HPS 3-Keto-L-gul 59.7 1.2E+02 0.0025 26.3 11.6 24 189-213 170-193 (202)
471 PRK07315 fructose-bisphosphate 59.6 1.4E+02 0.0031 28.6 11.3 190 42-257 5-232 (293)
472 PF01081 Aldolase: KDPG and KH 59.4 7 0.00015 35.4 2.3 95 68-212 86-182 (196)
473 PRK08629 coproporphyrinogen II 59.1 77 0.0017 31.8 9.8 121 51-205 99-234 (433)
474 cd01314 D-HYD D-hydantoinases 59.1 98 0.0021 30.3 10.4 95 54-153 144-264 (447)
475 TIGR03470 HpnH hopanoid biosyn 58.9 20 0.00044 34.2 5.5 50 71-123 150-200 (318)
476 PRK13210 putative L-xylulose 5 58.9 43 0.00093 30.3 7.4 84 68-151 50-154 (284)
477 PF01487 DHquinase_I: Type I 3 58.8 73 0.0016 28.5 8.8 84 103-207 9-97 (224)
478 PLN02274 inosine-5'-monophosph 58.7 27 0.00059 35.9 6.7 19 189-207 364-382 (505)
479 cd02931 ER_like_FMN Enoate red 58.7 49 0.0011 32.5 8.3 21 105-125 256-276 (382)
480 cd00950 DHDPS Dihydrodipicolin 58.6 1.5E+02 0.0033 27.3 12.8 155 54-253 35-199 (284)
481 TIGR01036 pyrD_sub2 dihydrooro 58.5 82 0.0018 30.5 9.6 80 102-206 152-245 (335)
482 TIGR00742 yjbN tRNA dihydrouri 58.3 42 0.00091 32.4 7.5 78 107-207 73-163 (318)
483 PRK00748 1-(5-phosphoribosyl)- 58.3 96 0.0021 27.5 9.4 73 102-207 31-105 (233)
484 TIGR01515 branching_enzym alph 58.2 22 0.00047 37.2 6.0 49 104-152 160-228 (613)
485 PRK06978 nicotinate-nucleotide 58.2 44 0.00096 32.3 7.6 41 188-238 215-255 (294)
486 TIGR00007 phosphoribosylformim 58.1 76 0.0016 28.2 8.8 96 102-235 29-125 (230)
487 PF01261 AP_endonuc_2: Xylose 58.1 4.9 0.00011 33.9 1.1 99 54-152 9-134 (213)
488 TIGR01163 rpe ribulose-phospha 58.1 37 0.00079 29.5 6.6 41 101-141 11-53 (210)
489 cd00945 Aldolase_Class_I Class 58.1 1.1E+02 0.0024 25.6 11.3 99 102-229 66-170 (201)
490 COG0502 BioB Biotin synthase a 57.8 1.2E+02 0.0025 30.1 10.5 125 104-254 144-290 (335)
491 PF13380 CoA_binding_2: CoA bi 57.7 14 0.0003 30.3 3.6 42 100-147 65-106 (116)
492 TIGR00262 trpA tryptophan synt 57.6 1E+02 0.0023 28.7 9.9 19 189-207 211-229 (256)
493 TIGR00433 bioB biotin syntheta 57.6 1.1E+02 0.0023 28.2 9.9 69 73-145 123-202 (296)
494 PTZ00314 inosine-5'-monophosph 57.6 32 0.00069 35.3 6.9 70 105-207 294-375 (495)
495 COG0119 LeuA Isopropylmalate/h 57.5 1.5E+02 0.0032 30.0 11.4 143 42-226 28-182 (409)
496 PRK01033 imidazole glycerol ph 57.2 85 0.0018 29.0 9.2 92 105-235 34-127 (258)
497 TIGR01496 DHPS dihydropteroate 57.1 1.3E+02 0.0028 28.0 10.4 74 72-145 63-163 (257)
498 COG1891 Uncharacterized protei 57.0 12 0.00026 34.4 3.3 58 49-117 118-183 (235)
499 PF01791 DeoC: DeoC/LacD famil 57.0 13 0.00028 33.7 3.7 75 107-202 82-163 (236)
500 TIGR01919 hisA-trpF 1-(5-phosp 56.9 70 0.0015 29.6 8.5 82 110-229 40-121 (243)
No 1
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=100.00 E-value=8e-94 Score=657.17 Aligned_cols=237 Identities=40% Similarity=0.681 Sum_probs=197.0
Q ss_pred CCCCCCCCCCCCCceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCC-cH
Q 022982 13 EYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DW 91 (289)
Q Consensus 13 ~~~~R~~KPR~~GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~G-tl 91 (289)
++|.|++|||++|+|||+|||+ |+++++|+|++||+|||++|||||||+|||++.|++||++||+|||+|||| |+
T Consensus 1 ~~~~R~~KPR~~GlT~v~Dkgl----g~~~~~dlLe~ag~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl 76 (244)
T PF02679_consen 1 NLPERPEKPRSRGLTMVIDKGL----GLRYLEDLLESAGDYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTL 76 (244)
T ss_dssp -TTGGG-SS-SSS-EEEEESS------HHHHHHHHHHHGGG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHH
T ss_pred CCCCCCCCCCCCCcEEEecCCC----CHHHHHHHHHHhhhhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHH
Confidence 4799999999999999999998 888999999999999999999999999999999999999999999999997 69
Q ss_pred HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 022982 92 AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (289)
Q Consensus 92 fE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~ 171 (289)
||+|++|+ ++++|+++||++||++|||||||++||+++|+++|++++++||+|+||||+|++..+ .
T Consensus 77 ~E~a~~q~--~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~EvG~K~~~~~------~------ 142 (244)
T PF02679_consen 77 FEVAYQQG--KFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFKVLSEVGKKDPESD------F------ 142 (244)
T ss_dssp HHHHHHTT---HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSEEEEEES-SSHHHH------T------
T ss_pred HHHHHhcC--hHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCEEeecccCCCchhc------c------
Confidence 99999999 999999999999999999999999999999999999999999999999999875321 1
Q ss_pred ccCCCCccccccHHHHHHHHHHHHHccCcEEEEecc-----ccccCCCCccHHHHHHHHhccCCCceEEecCCchhHHHH
Q 022982 172 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-----DVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWF 246 (289)
Q Consensus 172 ~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-----GI~d~~G~~r~d~v~~ii~~l~~eklifEAP~k~qQ~~~ 246 (289)
..|++++|+++++||+|||++|||||| ||||++|+||+|++++|++++|++|||||||+|+||+||
T Consensus 143 ---------~~~~~~~i~~~~~dLeAGA~~ViiEarEsG~~Gi~~~~g~~r~d~v~~i~~~~~~~~lifEAp~k~qq~~~ 213 (244)
T PF02679_consen 143 ---------SLDPEELIEQAKRDLEAGADKVIIEARESGKGGIYDNDGEVRTDLVEKIIERLGLEKLIFEAPQKEQQEWF 213 (244)
T ss_dssp ---------T--CCHHHHHHHHHHHHTECEEEE--TTT--STTB-TTS-B-HHHHHHHHTTS-GGGEEEE--SHHHHHHH
T ss_pred ---------cCCHHHHHHHHHHHHHCCCCEEEEeeeccCCCCccCCCCCccHHHHHHHHHhCCHhHEEEeCCCHhHHHHH
Confidence 225788899999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHhCCCcccc-cCCCCchhhhhhhcccCCC
Q 022982 247 IRRYGPKVNLF-VDHSQVMDLECLRGRNLGK 276 (289)
Q Consensus 247 I~~fG~~VNLg-I~~~eVl~LE~LR~g~~G~ 276 (289)
|++|||||||| |+|+||++|||||+|+||.
T Consensus 214 I~~~G~~VNLgNI~~~eVl~LE~LR~GLrgD 244 (244)
T PF02679_consen 214 IKRFGPNVNLGNIAPSEVLALETLRRGLRGD 244 (244)
T ss_dssp HHHH-TT--EEEEEGGGHHHHHHHHCT-SGG
T ss_pred HHHhCCCcCcccCCHHHHHHHHHHhccccCC
Confidence 99999999998 9999999999999999983
No 2
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=100.00 E-value=9.9e-88 Score=614.32 Aligned_cols=226 Identities=24% Similarity=0.419 Sum_probs=215.5
Q ss_pred ceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHH
Q 022982 26 VTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFK 104 (289)
Q Consensus 26 lT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~G-tlfE~a~~qg~~~~~ 104 (289)
+|||+|||| |+++++|+|++||+|||++||||||++|||++.|||||++||+|||+|||| ||||+|+.|+ +++
T Consensus 1 lT~v~dkgl----~~~~~~d~Le~~g~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~GGtl~E~~~~q~--~~~ 74 (237)
T TIGR03849 1 ITMVLDKGL----PPKFVEDYLKVCGDYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPGGTLFEIAHSKG--KFD 74 (237)
T ss_pred CceEecCCC----CHHHHHHHHHHhhhheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCCccHHHHHHHhh--hHH
Confidence 699999999 888999999999999999999999999999999999999999999999997 6999999998 999
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccH
Q 022982 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184 (289)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~ 184 (289)
+|+++||++||++|||||||++||+++|+++|++++++||+|+||||+|++.. +. ..++
T Consensus 75 ~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~EvG~K~~~~------~~---------------~~~~ 133 (237)
T TIGR03849 75 EYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMVLSEVGKKSPEK------DS---------------ELTP 133 (237)
T ss_pred HHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeEeccccccCCcc------cc---------------cCCH
Confidence 99999999999999999999999999999999999999999999999998521 11 1258
Q ss_pred HHHHHHHHHHHHccCcEEEEecc------ccccCCCCccHHHHHHHHhccCCCceEEecCCchhHHHHHHHhCCCcccc-
Q 022982 185 DLLIRRAERCLEAGADMIMIDSD------DVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYGPKVNLF- 257 (289)
Q Consensus 185 ~~~I~~~~~dLeAGA~~ViiEar------GI~d~~G~~r~d~v~~ii~~l~~eklifEAP~k~qQ~~~I~~fG~~VNLg- 257 (289)
+++|+++++||+|||++|||||| |||+++|+||+|++++|++++|++|||||||+|+||+|||++|||||||+
T Consensus 134 ~~~i~~~~~~LeAGA~~ViiEarEsg~~~Gi~~~~g~~r~d~v~~i~~~l~~eklifEAp~k~~q~~~I~~~G~~VNL~N 213 (237)
T TIGR03849 134 DDRIKLINKDLEAGADYVIIEGRESGKNIGLFDEKGNVKEDELDVLAENVDINKVIFEAPQKNQQVEFILKFGPDVNLGN 213 (237)
T ss_pred HHHHHHHHHHHHCCCcEEEEeehhcCCCcceeCCCCCCchHHHHHHHhhCChhcEEEECCCHHHHHHHHHHhCCCccccc
Confidence 99999999999999999999995 89999999999999999999999999999999999999999999999997
Q ss_pred cCCCCchhhhhhhcccCCCcc
Q 022982 258 VDHSQVMDLECLRGRNLGKSH 278 (289)
Q Consensus 258 I~~~eVl~LE~LR~g~~G~~~ 278 (289)
|+|+||++|||||+|+||.++
T Consensus 214 I~~~evi~LE~LR~GLrgDT~ 234 (237)
T TIGR03849 214 IPPEEVISLETLRRGLRGDTF 234 (237)
T ss_pred CCHHHHHHHHHHhcccccccc
Confidence 999999999999999999765
No 3
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=100.00 E-value=7.6e-83 Score=574.62 Aligned_cols=244 Identities=26% Similarity=0.470 Sum_probs=230.1
Q ss_pred ccccCC-CCCCCCCCCCCCceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCcee
Q 022982 8 WKSFDE-YEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV 86 (289)
Q Consensus 8 ~~~f~~-~~~R~~KPR~~GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v 86 (289)
|+.|.- .|.|++|||.+|+|+|+|||| ||+.++|+|++||+|||++||||||+.|.+++.+++||++||+|||+|
T Consensus 1 m~aF~f~~~~r~~kPr~~G~T~vldkg~----~p~f~~D~~~vagdyVDfvKfgwGT~~Li~kd~V~ekid~y~e~~i~v 76 (258)
T COG1809 1 MNAFEFLPPARPEKPRTFGMTVVLDKGL----GPRFVEDVLKVAGDYVDFVKFGWGTSSLIDKDQVKEKIDMYKENDIYV 76 (258)
T ss_pred CCcccccCCCCCCCCccCCeEEEEeCCC----ChHHHHHHHHhhhhheeeeeecccccccccHHHHHHHHHHHHHcCcee
Confidence 345664 467999999999999999999 888999999999999999999999999999999999999999999999
Q ss_pred cCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccc
Q 022982 87 STG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDR 165 (289)
Q Consensus 87 ~~G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~ 165 (289)
||| |+||+++.|+ +|++|+++|+++||++|||||||++|+.++||++|+++.+.||+|+||+|+|.+. .|+
T Consensus 77 ~pGGtlfe~a~~~~--kvdeyl~e~~~lGfe~iEIS~G~i~m~~eek~~lIe~a~d~Gf~vlsEvGkk~~e------~~~ 148 (258)
T COG1809 77 FPGGTLFEIAYSQD--KVDEYLNEAKELGFEAIEISNGTIPMSTEEKCRLIERAVDEGFMVLSEVGKKDPE------SDS 148 (258)
T ss_pred cCCceEEEeehhcc--cHHHHHHHHHHcCccEEEecCCeeecchHHHHHHHHHHHhcccEEehhhcccCcc------hhh
Confidence 996 7999999999 9999999999999999999999999999999999999999999999999999863 233
Q ss_pred ccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEecc------ccccCCCCccHHHHHHHHhccCCCceEEecCC
Q 022982 166 AFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD------DVCKHADSLRADIIAKVIGRLGLEKTMFEATN 239 (289)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar------GI~d~~G~~r~d~v~~ii~~l~~eklifEAP~ 239 (289)
. .+++++++.+..|++|||++||+||| |||++.|+||++.++.|++++|++|+|||||+
T Consensus 149 ~---------------l~~~d~~k~i~~dvdaGa~~vi~eAresg~~~Gi~~~~g~~r~~~~~~ii~~l~i~rviFEAp~ 213 (258)
T COG1809 149 A---------------LSPDDRVKLINDDVDAGAEYVIAEARESGKEIGITDNEGEVREGELDSIIKGLGINRVIFEAPQ 213 (258)
T ss_pred h---------------cChHHHHHHHHHHHHcchHHhhhhhhhhccccCccccccchhhhHHHHHHhcCCchheeeecCC
Confidence 2 14889999999999999999999998 79999999999999999999999999999999
Q ss_pred chhHHHHHHHhCCCcccc-cCCCCchhhhhhhcccCCCcc
Q 022982 240 PRTSEWFIRRYGPKVNLF-VDHSQVMDLECLRGRNLGKSH 278 (289)
Q Consensus 240 k~qQ~~~I~~fG~~VNLg-I~~~eVl~LE~LR~g~~G~~~ 278 (289)
|.||+|||++|||+|||+ |||+||++|||||+|+||.+.
T Consensus 214 k~qq~~fI~k~GpevNLanip~~eii~LEtLR~gLrgdT~ 253 (258)
T COG1809 214 KSQQVWFILKIGPEVNLANIPFEEIIALETLRRGLRGDTF 253 (258)
T ss_pred cchhhhHHHHhCCcCcccCCCHHHHHHHHHHHhhccccch
Confidence 999999999999999999 999999999999999888554
No 4
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=97.39 E-value=0.0042 Score=60.06 Aligned_cols=167 Identities=15% Similarity=0.149 Sum_probs=124.4
Q ss_pred CCceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH
Q 022982 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF 103 (289)
Q Consensus 24 ~GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~ 103 (289)
.=+++++.||. + ..+|+-.....-+|.+.++.. ....+.+++-++.+|++|..++.. ++.+....++.+
T Consensus 78 ~~~~~ll~pg~----~--~~~dl~~a~~~gvd~iri~~~---~~e~~~~~~~i~~ak~~G~~v~~~--l~~a~~~~~e~l 146 (337)
T PRK08195 78 AKIAALLLPGI----G--TVDDLKMAYDAGVRVVRVATH---CTEADVSEQHIGLARELGMDTVGF--LMMSHMAPPEKL 146 (337)
T ss_pred CEEEEEeccCc----c--cHHHHHHHHHcCCCEEEEEEe---cchHHHHHHHHHHHHHCCCeEEEE--EEeccCCCHHHH
Confidence 45677788876 2 356776667778999998864 445568999999999999877653 233334455678
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccc
Q 022982 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (289)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~ 183 (289)
.++.+.+.++|.++|-|.|-.-.+.+++-.++|+.++++ +.....+|.... .|
T Consensus 147 ~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~-l~~~i~ig~H~H--------------------------nn 199 (337)
T PRK08195 147 AEQAKLMESYGAQCVYVVDSAGALLPEDVRDRVRALRAA-LKPDTQVGFHGH--------------------------NN 199 (337)
T ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCHHHHHHHHHHHHHh-cCCCCeEEEEeC--------------------------CC
Confidence 888889999999999999999999999999999999984 211223444321 12
Q ss_pred HHHHHHHHHHHHHccCcEEEEecc--ccccCCCCccHHHHHHHHhccCC
Q 022982 184 VDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLGL 230 (289)
Q Consensus 184 ~~~~I~~~~~dLeAGA~~ViiEar--GI~d~~G~~r~d~v~~ii~~l~~ 230 (289)
...-+-.....++|||+ +|++. |+=...||..++.+-..+++.|.
T Consensus 200 lGla~ANslaAi~aGa~--~iD~Sl~GlG~~aGN~~tE~lv~~L~~~g~ 246 (337)
T PRK08195 200 LGLGVANSLAAVEAGAT--RIDGSLAGLGAGAGNTPLEVLVAVLDRMGW 246 (337)
T ss_pred cchHHHHHHHHHHhCCC--EEEecChhhcccccCccHHHHHHHHHhcCC
Confidence 33346777788999999 67886 89889999999988777766553
No 5
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=97.39 E-value=0.0027 Score=58.14 Aligned_cols=159 Identities=17% Similarity=0.255 Sum_probs=93.6
Q ss_pred cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------ccCChhHHHHHHHHHHHcCCccccee-eeecCCCCCCC
Q 022982 90 DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------LEIPEETLLRYVRLVKSAGLKAKPKF-AVMFNKSDIPS 161 (289)
Q Consensus 90 tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt-------i~i~~~~r~~lI~~~~~~G~~v~~E~-g~k~~~~evg~ 161 (289)
|.+|+++.++ -.+++.++.++++||++||++-.. ..++.++..++-+.+++.|+++-+-- +...+. ..+
T Consensus 11 ~~~~~~~~~~-~~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~-~~~- 87 (283)
T PRK13209 11 GIYEKALPAG-ECWLEKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVNSMCLSAHRRF-PLG- 87 (283)
T ss_pred eeecccCCCC-CCHHHHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCceeEEeccccccc-CCC-
Confidence 6789999765 379999999999999999998543 24477778888888889999865311 110000 000
Q ss_pred ccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCC--Ccc---H---HHHHHHHhccCCCce
Q 022982 162 DRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHAD--SLR---A---DIIAKVIGRLGLEKT 233 (289)
Q Consensus 162 ~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G--~~r---~---d~v~~ii~~l~~ekl 233 (289)
..|+.. .....+.+-+.++..-+.|+.+|.+-+........ ... . ..+.++++..|+ +|
T Consensus 88 ~~~~~~------------r~~~~~~~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV-~i 154 (283)
T PRK13209 88 SEDDAV------------RAQALEIMRKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELASRASV-TL 154 (283)
T ss_pred CCCHHH------------HHHHHHHHHHHHHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHHHHhCC-EE
Confidence 001100 00113445566677778999999986542211111 100 1 223334444454 57
Q ss_pred EEec---C---CchhHHHHHHHhC-CCcccccCCCCch
Q 022982 234 MFEA---T---NPRTSEWFIRRYG-PKVNLFVDHSQVM 264 (289)
Q Consensus 234 ifEA---P---~k~qQ~~~I~~fG-~~VNLgI~~~eVl 264 (289)
.+|. + ...+-..+++..| |+|.|..|+.++.
T Consensus 155 ~iE~~~~~~~~~~~~~~~ll~~v~~~~lgl~~D~~h~~ 192 (283)
T PRK13209 155 AFEIMDTPFMNSISKALGYAHYLNSPWFQLYPDIGNLS 192 (283)
T ss_pred EEeecCCcccCCHHHHHHHHHHhCCCccceEeccchHH
Confidence 7775 1 3334556788888 5666656766655
No 6
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=97.24 E-value=0.0045 Score=59.78 Aligned_cols=167 Identities=16% Similarity=0.165 Sum_probs=123.9
Q ss_pred CCceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH
Q 022982 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF 103 (289)
Q Consensus 24 ~GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~ 103 (289)
.=+++++.||. + ..+|+=.....-||.+-++.. ....+.+++-|+.+|+.|..++.. ++.+....|+.+
T Consensus 77 ~~~~~ll~pg~----~--~~~dl~~a~~~gvd~iri~~~---~~e~d~~~~~i~~ak~~G~~v~~~--l~~s~~~~~e~l 145 (333)
T TIGR03217 77 AKVAVLLLPGI----G--TVHDLKAAYDAGARTVRVATH---CTEADVSEQHIGMARELGMDTVGF--LMMSHMTPPEKL 145 (333)
T ss_pred CEEEEEeccCc----c--CHHHHHHHHHCCCCEEEEEec---cchHHHHHHHHHHHHHcCCeEEEE--EEcccCCCHHHH
Confidence 45788888876 2 346665555567999998864 445568999999999999877642 233334556688
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccc
Q 022982 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (289)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~ 183 (289)
.++.+.+.+.|.++|-|.|-.-.+.+++-.++|+.++++ +..-.++|.... .|
T Consensus 146 ~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~-l~~~i~ig~H~H--------------------------nn 198 (333)
T TIGR03217 146 AEQAKLMESYGADCVYIVDSAGAMLPDDVRDRVRALKAV-LKPETQVGFHAH--------------------------HN 198 (333)
T ss_pred HHHHHHHHhcCCCEEEEccCCCCCCHHHHHHHHHHHHHh-CCCCceEEEEeC--------------------------CC
Confidence 888899999999999999999999999999999999974 221123555321 12
Q ss_pred HHHHHHHHHHHHHccCcEEEEecc--ccccCCCCccHHHHHHHHhccCC
Q 022982 184 VDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLGL 230 (289)
Q Consensus 184 ~~~~I~~~~~dLeAGA~~ViiEar--GI~d~~G~~r~d~v~~ii~~l~~ 230 (289)
...-+-.....++|||++ |++. |+=...||..++.+-..++..|.
T Consensus 199 lGla~ANslaAi~aGa~~--iD~Sl~G~G~~aGN~~~E~lv~~l~~~g~ 245 (333)
T TIGR03217 199 LSLAVANSIAAIEAGATR--IDASLRGLGAGAGNAPLEVFVAVLDRLGW 245 (333)
T ss_pred CchHHHHHHHHHHhCCCE--EEeecccccccccCccHHHHHHHHHhcCC
Confidence 333467777889999998 6775 99999999999988877776553
No 7
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=97.12 E-value=0.0068 Score=56.74 Aligned_cols=165 Identities=12% Similarity=0.116 Sum_probs=117.3
Q ss_pred CCCCCCCchhHHHHHHHhhccc-ccEEEecCccccccChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHH
Q 022982 32 PHYTLSSSHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVED 109 (289)
Q Consensus 32 kGl~~~~g~~~~~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~G-tlfE~a~~qg~~~~~~yl~~ 109 (289)
+|+... +....++.++.+.+. +|.+-+...++-+ +.+++-++.++++|..+... .. +.+-...++.+.++.+.
T Consensus 83 ~~~~~~-p~~~~~~di~~~~~~g~~~iri~~~~~~~---~~~~~~i~~ak~~G~~v~~~i~~-~~~~~~~~~~~~~~~~~ 157 (275)
T cd07937 83 VGYRHY-PDDVVELFVEKAAKNGIDIFRIFDALNDV---RNLEVAIKAVKKAGKHVEGAICY-TGSPVHTLEYYVKLAKE 157 (275)
T ss_pred cCccCC-CcHHHHHHHHHHHHcCCCEEEEeecCChH---HHHHHHHHHHHHCCCeEEEEEEe-cCCCCCCHHHHHHHHHH
Confidence 455433 344567777766665 8999998766654 57999999999999876541 11 11112344578888899
Q ss_pred HHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHH
Q 022982 110 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (289)
Q Consensus 110 ~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~ 189 (289)
+.++|.+.|-+.|-.-.+.+++-.++|+.++++ +. ..+++.+ .. |...-..
T Consensus 158 ~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~--~~l~~H~-Hn-------------------------d~GlA~a 208 (275)
T cd07937 158 LEDMGADSICIKDMAGLLTPYAAYELVKALKKE-VG--LPIHLHT-HD-------------------------TSGLAVA 208 (275)
T ss_pred HHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHh-CC--CeEEEEe-cC-------------------------CCChHHH
Confidence 999999999999999999999999999999985 11 2344432 11 1223367
Q ss_pred HHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCC
Q 022982 190 RAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGL 230 (289)
Q Consensus 190 ~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~ 230 (289)
.+...++|||++|=.=--|+=+..||..++.+-..++..+.
T Consensus 209 N~laA~~aGa~~vd~sv~GlG~~aGN~~~E~l~~~L~~~g~ 249 (275)
T cd07937 209 TYLAAAEAGVDIVDTAISPLSGGTSQPSTESMVAALRGTGR 249 (275)
T ss_pred HHHHHHHhCCCEEEEecccccCCcCChhHHHHHHHHHccCC
Confidence 77778999999754444589888999999988777765543
No 8
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=96.95 E-value=0.014 Score=53.81 Aligned_cols=152 Identities=18% Similarity=0.232 Sum_probs=110.9
Q ss_pred HHHHHhhcccccEEEecCccccccCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHH
Q 022982 44 EDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQ 112 (289)
Q Consensus 44 ~DlLe~ag~yID~lKfg~GTs~l~p~-----------~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~ 112 (289)
+|+=......+|.+.+...+|-.+.+ +.+++-++.++++|..|+.+- |.+-...++.+.++.+.+.+
T Consensus 73 ~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~--~~~~~~~~~~~~~~~~~~~~ 150 (259)
T cd07939 73 EDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGA--EDASRADPDFLIEFAEVAQE 150 (259)
T ss_pred HHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEee--ccCCCCCHHHHHHHHHHHHH
Confidence 34333344568999998877766433 357789999999999887653 23333445678888889999
Q ss_pred cCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHH
Q 022982 113 VGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAE 192 (289)
Q Consensus 113 lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~ 192 (289)
.|.+.|-+.|-+-.+.+++-.++++.+++. +. ..++..+. . |...-.-.+-
T Consensus 151 ~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~--~~l~~H~H-n-------------------------~~Gla~An~l 201 (259)
T cd07939 151 AGADRLRFADTVGILDPFTTYELIRRLRAA-TD--LPLEFHAH-N-------------------------DLGLATANTL 201 (259)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHHHHHh-cC--CeEEEEec-C-------------------------CCChHHHHHH
Confidence 999999999999999999999999999974 22 23555331 1 1223356777
Q ss_pred HHHHccCcEEEEecc--ccccCCCCccHHHHHHHHhcc
Q 022982 193 RCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 193 ~dLeAGA~~ViiEar--GI~d~~G~~r~d~v~~ii~~l 228 (289)
..+++||++ |++. |+=+..||.-++.+-..++..
T Consensus 202 aAi~aG~~~--vd~s~~G~G~~aGN~~tE~lv~~l~~~ 237 (259)
T cd07939 202 AAVRAGATH--VSVTVNGLGERAGNAALEEVVMALKHL 237 (259)
T ss_pred HHHHhCCCE--EEEecccccccccCcCHHHHHHHHHHh
Confidence 789999986 5886 888999999998877766544
No 9
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=96.92 E-value=0.011 Score=56.83 Aligned_cols=124 Identities=17% Similarity=0.278 Sum_probs=92.1
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc-----
Q 022982 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE----- 126 (289)
Q Consensus 53 yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~----- 126 (289)
-|+.+-||+||..+.|.+.+++.++..+++ +.++ .|+.+.-+|+.+ ++.++.+++.||+.|.|+--+.+
T Consensus 51 ~v~~iyfGGGTPs~l~~~~l~~ll~~i~~~---~~~~--~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~ 125 (350)
T PRK08446 51 KIESVFIGGGTPSTVSAKFYEPIFEIISPY---LSKD--CEITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLK 125 (350)
T ss_pred ceeEEEECCCccccCCHHHHHHHHHHHHHh---cCCC--ceEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHH
Confidence 589999999999999999999999999988 2333 244444455543 78999999999999998776662
Q ss_pred -----CChhHHHHHHHHHHHcCCccc-ceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCc
Q 022982 127 -----IPEETLLRYVRLVKSAGLKAK-PKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (289)
Q Consensus 127 -----i~~~~r~~lI~~~~~~G~~v~-~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~ 200 (289)
-+.++-.+.|+.+++.||..+ ..+-. +. |. +|.+.+.+.++..++.|++
T Consensus 126 ~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~--Gl----------------Pg-------qt~~~~~~~l~~~~~l~~~ 180 (350)
T PRK08446 126 FLGRIHSQKQIIKAIENAKKAGFENISIDLIY--DT----------------PL-------DNKKLLKEELKLAKELPIN 180 (350)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCCCEEEEEeec--CC----------------CC-------CCHHHHHHHHHHHHhcCCC
Confidence 345666789999999998622 22211 11 11 1478888999999999999
Q ss_pred EEEEec
Q 022982 201 MIMIDS 206 (289)
Q Consensus 201 ~ViiEa 206 (289)
+|-+-.
T Consensus 181 ~is~y~ 186 (350)
T PRK08446 181 HLSAYS 186 (350)
T ss_pred EEEecc
Confidence 886533
No 10
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=96.91 E-value=0.0082 Score=58.33 Aligned_cols=121 Identities=17% Similarity=0.374 Sum_probs=89.7
Q ss_pred ccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc----
Q 022982 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE---- 126 (289)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~---- 126 (289)
..|+-+-||+||..+.|.+.|++.++..+++.. .|+.+.-+|+.+ ++.++.+++.||+.|.|.--|.+
T Consensus 57 ~~i~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~-------~eit~E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L 129 (370)
T PRK06294 57 HFIDTVFFGGGTPSLVPPALIQDILKTLEAPHA-------TEITLEANPENLSESYIRALALTGINRISIGVQTFDDPLL 129 (370)
T ss_pred CceeEEEECCCccccCCHHHHHHHHHHHHhCCC-------CeEEEEeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHH
Confidence 458899999999999999999999999987622 133334466665 78999999999999988776662
Q ss_pred ------CChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccC
Q 022982 127 ------IPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 199 (289)
Q Consensus 127 ------i~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA 199 (289)
-+.++-.+.|+.+++.||. +.-.+ -.+. |. +|.+++.+.++..++.+.
T Consensus 130 ~~l~R~~~~~~~~~ai~~~~~~g~~~v~~Dl--i~Gl----------------Pg-------qt~~~~~~~l~~~~~l~~ 184 (370)
T PRK06294 130 KLLGRTHSSSKAIDAVQECSEHGFSNLSIDL--IYGL----------------PT-------QSLSDFIVDLHQAITLPI 184 (370)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCCCeEEEEe--ecCC----------------CC-------CCHHHHHHHHHHHHccCC
Confidence 3455667788999999986 22221 1111 11 148888999999999999
Q ss_pred cEEEE
Q 022982 200 DMIMI 204 (289)
Q Consensus 200 ~~Vii 204 (289)
++|-+
T Consensus 185 ~~is~ 189 (370)
T PRK06294 185 THISL 189 (370)
T ss_pred CeEEE
Confidence 87754
No 11
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=96.90 E-value=0.0044 Score=55.98 Aligned_cols=144 Identities=19% Similarity=0.228 Sum_probs=107.1
Q ss_pred ccEEEecCcccccc-----------ChhHHHHHHHHHHhCCceecCCcHHHHHHH--hCCchHHHHHHHHHHcCCCEEEe
Q 022982 54 VDGLKFSGGSHSLM-----------PKPFIEEVVKRAHQHDVYVSTGDWAEHLIR--NGPSAFKEYVEDCKQVGFDTIEL 120 (289)
Q Consensus 54 ID~lKfg~GTs~l~-----------p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~--qg~~~~~~yl~~~k~lGF~~IEI 120 (289)
+|.+-+...++-.+ ..+.+.+-++.++++|+.+... +|.+.. .+++.+.++++.+.++|.+.|-+
T Consensus 88 ~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~--~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l 165 (265)
T cd03174 88 VDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGS--LEDAFGCKTDPEYVLEVAKALEEAGADEISL 165 (265)
T ss_pred cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE--EEeecCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 78888887766211 1236888999999999977653 122223 56668999999999999999999
Q ss_pred cCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCc
Q 022982 121 NVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (289)
Q Consensus 121 SdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~ 200 (289)
.|-+-.+.+++..++|+.+++.-=. ..++..+ . .|...-+..+-..++|||+
T Consensus 166 ~Dt~G~~~P~~v~~li~~l~~~~~~--~~~~~H~-H-------------------------n~~gla~an~laA~~aG~~ 217 (265)
T cd03174 166 KDTVGLATPEEVAELVKALREALPD--VPLGLHT-H-------------------------NTLGLAVANSLAALEAGAD 217 (265)
T ss_pred chhcCCcCHHHHHHHHHHHHHhCCC--CeEEEEe-C-------------------------CCCChHHHHHHHHHHcCCC
Confidence 9999999999999999999985211 2344422 1 1233347778888999997
Q ss_pred EEEEecc--ccccCCCCccHHHHHHHHhccC
Q 022982 201 MIMIDSD--DVCKHADSLRADIIAKVIGRLG 229 (289)
Q Consensus 201 ~ViiEar--GI~d~~G~~r~d~v~~ii~~l~ 229 (289)
+ |++- |+=+..||..++.+-..++..+
T Consensus 218 ~--id~s~~G~G~~~Gn~~~e~~~~~l~~~~ 246 (265)
T cd03174 218 R--VDGSVNGLGERAGNAATEDLVAALEGLG 246 (265)
T ss_pred E--EEeccccccccccCccHHHHHHHHHhcC
Confidence 7 4886 8889999999998887777655
No 12
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=96.83 E-value=0.042 Score=49.61 Aligned_cols=141 Identities=19% Similarity=0.245 Sum_probs=98.2
Q ss_pred HHHHHhhcccccEEEecCcccc----ccChhHHHHHHHHHHhCC--ceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022982 44 EDIFESMGQFVDGLKFSGGSHS----LMPKPFIEEVVKRAHQHD--VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (289)
Q Consensus 44 ~DlLe~ag~yID~lKfg~GTs~----l~p~~~l~eKI~l~~~~g--V~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (289)
-+.|..+| ||.+=+|++.+. +++ ...+.++.+++.+ +.+. ++.++ . .+.++.+++.|++.
T Consensus 25 ~~~L~~~G--V~~IEvg~~~~~~~~p~~~--~~~~~i~~l~~~~~~~~~~-------~l~~~--~-~~~i~~a~~~g~~~ 90 (265)
T cd03174 25 AEALDEAG--VDSIEVGSGASPKAVPQME--DDWEVLRAIRKLVPNVKLQ-------ALVRN--R-EKGIERALEAGVDE 90 (265)
T ss_pred HHHHHHcC--CCEEEeccCcCccccccCC--CHHHHHHHHHhccCCcEEE-------EEccC--c-hhhHHHHHhCCcCE
Confidence 34455556 999999999986 444 3556666666665 5442 11122 1 67788899999999
Q ss_pred EEecCCcccC------------ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHH
Q 022982 118 IELNVGSLEI------------PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVD 185 (289)
Q Consensus 118 IEISdGti~i------------~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~ 185 (289)
|-|+....+. ..+.-.+.|+.+++.|+.+..-+-.-+ . + ..+++
T Consensus 91 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~-------~----------~-------~~~~~ 146 (265)
T cd03174 91 VRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAF-------G----------C-------KTDPE 146 (265)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeec-------C----------C-------CCCHH
Confidence 9999876631 345566889999999986443331100 0 0 12588
Q ss_pred HHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhc
Q 022982 186 LLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGR 227 (289)
Q Consensus 186 ~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~ 227 (289)
++.+.++...++||+.|. +.|..|...++.+.++++.
T Consensus 147 ~l~~~~~~~~~~g~~~i~-----l~Dt~G~~~P~~v~~li~~ 183 (265)
T cd03174 147 YVLEVAKALEEAGADEIS-----LKDTVGLATPEEVAELVKA 183 (265)
T ss_pred HHHHHHHHHHHcCCCEEE-----echhcCCcCHHHHHHHHHH
Confidence 899999999999999887 7788888888888888753
No 13
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=96.83 E-value=0.037 Score=50.42 Aligned_cols=159 Identities=15% Similarity=0.221 Sum_probs=90.2
Q ss_pred cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------ccCChhHHHHHHHHHHHcCCcccceeeeecCC-CCCCC
Q 022982 90 DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNK-SDIPS 161 (289)
Q Consensus 90 tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt-------i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~-~evg~ 161 (289)
|.|+.++-++ -.+++.++.++++||+.||++-.. ...+.++..++-+.+++.|+++-+ +..-... -..+
T Consensus 6 g~~~~~~~~~-~~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~-~~~~~~~~~~~~- 82 (284)
T PRK13210 6 GIYEKALPKH-LSWEERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPS-MCLSGHRRFPFG- 82 (284)
T ss_pred chhhhhcCCC-CCHHHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceE-EecccccCcCCC-
Confidence 4566666542 379999999999999999997322 245667788888899999998653 2210000 0011
Q ss_pred ccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccc-cCCC-CccH------HHHHHHHhccCCCce
Q 022982 162 DRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVC-KHAD-SLRA------DIIAKVIGRLGLEKT 233 (289)
Q Consensus 162 ~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~-d~~G-~~r~------d~v~~ii~~l~~ekl 233 (289)
..|++. .....+.+.+.++..-+.||..|.+-+-..+ .... .... ..+.++++..|+ +|
T Consensus 83 ~~d~~~------------r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv-~l 149 (284)
T PRK13210 83 SRDPAT------------RERALEIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQV-ML 149 (284)
T ss_pred CCCHHH------------HHHHHHHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCC-EE
Confidence 111100 0012344455555566889999998532211 1111 1111 223334444554 57
Q ss_pred EEec------CCchhHHHHHHHhC-CCcccccCCCCch
Q 022982 234 MFEA------TNPRTSEWFIRRYG-PKVNLFVDHSQVM 264 (289)
Q Consensus 234 ifEA------P~k~qQ~~~I~~fG-~~VNLgI~~~eVl 264 (289)
.+|. +...+-..+++.++ |+|.+..|+.++.
T Consensus 150 ~lE~~~~~~~~~~~~~~~l~~~v~~~~~~~~~D~~h~~ 187 (284)
T PRK13210 150 AVEIMDTPFMNSISKWKKWDKEIDSPWLTVYPDVGNLS 187 (284)
T ss_pred EEEecCccccCCHHHHHHHHHHcCCCceeEEecCChhh
Confidence 7776 33456778899998 4455446666543
No 14
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=96.81 E-value=0.031 Score=51.69 Aligned_cols=165 Identities=16% Similarity=0.166 Sum_probs=119.0
Q ss_pred CCceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH
Q 022982 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF 103 (289)
Q Consensus 24 ~GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~ 103 (289)
.-++++..++. + ..+|+-.....-+|.+-+..-.+- .+.+++-++.+|++|..+...- |.+....|+.+
T Consensus 75 ~~~~~~~~~~~----~--~~~~i~~a~~~g~~~iri~~~~s~---~~~~~~~i~~ak~~G~~v~~~~--~~~~~~~~~~~ 143 (263)
T cd07943 75 AKLGVLLLPGI----G--TVDDLKMAADLGVDVVRVATHCTE---ADVSEQHIGAARKLGMDVVGFL--MMSHMASPEEL 143 (263)
T ss_pred CEEEEEecCCc----c--CHHHHHHHHHcCCCEEEEEechhh---HHHHHHHHHHHHHCCCeEEEEE--EeccCCCHHHH
Confidence 34555666655 2 346665556667999888765553 3479999999999998776531 22333455678
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccc
Q 022982 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (289)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~ 183 (289)
.++.+.+.+.|.+.|-+.|-+-.+.+++-.++++.++++ +.+ -.++..+ .. |
T Consensus 144 ~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~-~~~-~~l~~H~-Hn-------------------------~ 195 (263)
T cd07943 144 AEQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALREA-LDP-TPVGFHG-HN-------------------------N 195 (263)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCcCHHHHHHHHHHHHHh-CCC-ceEEEEe-cC-------------------------C
Confidence 888999999999999999999999999999999999884 111 1344432 11 2
Q ss_pred HHHHHHHHHHHHHccCcEEEEecc--ccccCCCCccHHHHHHHHhccC
Q 022982 184 VDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLG 229 (289)
Q Consensus 184 ~~~~I~~~~~dLeAGA~~ViiEar--GI~d~~G~~r~d~v~~ii~~l~ 229 (289)
...-+-.+...++|||++ |++. |+=+..||..++.+-..++..+
T Consensus 196 ~GlA~AN~laAi~aGa~~--vd~s~~GlG~~aGN~~~E~lv~~L~~~g 241 (263)
T cd07943 196 LGLAVANSLAAVEAGATR--IDGSLAGLGAGAGNTPLEVLVAVLERMG 241 (263)
T ss_pred cchHHHHHHHHHHhCCCE--EEeecccccCCcCCccHHHHHHHHHhcC
Confidence 334467778889999996 6775 8888899999998777666544
No 15
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=96.76 E-value=0.011 Score=53.10 Aligned_cols=157 Identities=24% Similarity=0.233 Sum_probs=107.4
Q ss_pred hhHHHHHHH-hhcccccEEEecCccccccC-----------hhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHH
Q 022982 40 HNVLEDIFE-SMGQFVDGLKFSGGSHSLMP-----------KPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYV 107 (289)
Q Consensus 40 ~~~~~DlLe-~ag~yID~lKfg~GTs~l~p-----------~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl 107 (289)
....+..++ ....=+|.+-+...+|-++. -+.+++-++.++++|..++.+. |.+-...++.+.++.
T Consensus 66 ~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~--~~~~~~~~~~~~~~~ 143 (237)
T PF00682_consen 66 EEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGC--EDASRTDPEELLELA 143 (237)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEE--TTTGGSSHHHHHHHH
T ss_pred HHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCc--cccccccHHHHHHHH
Confidence 334444333 23355777777776665322 3468888999999999987653 222234455788899
Q ss_pred HHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHH
Q 022982 108 EDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLL 187 (289)
Q Consensus 108 ~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~ 187 (289)
+.+.++|.+.|-|.|..-.+++++-.++|+.+++.--. .+++... .. |...-
T Consensus 144 ~~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~--~~l~~H~-Hn-------------------------d~Gla 195 (237)
T PF00682_consen 144 EALAEAGADIIYLADTVGIMTPEDVAELVRALREALPD--IPLGFHA-HN-------------------------DLGLA 195 (237)
T ss_dssp HHHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTT--SEEEEEE-BB-------------------------TTS-H
T ss_pred HHHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccC--CeEEEEe-cC-------------------------Cccch
Confidence 99999999999999999999999999999999996332 3455533 11 12233
Q ss_pred HHHHHHHHHccCcEEEEecc--ccccCCCCccHHHHHHHHhcc
Q 022982 188 IRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 188 I~~~~~dLeAGA~~ViiEar--GI~d~~G~~r~d~v~~ii~~l 228 (289)
+-.+-..++|||++| ++- |+=+..||...+.+-..++..
T Consensus 196 ~An~laA~~aGa~~i--d~t~~GlG~~~Gn~~le~lv~~L~~~ 236 (237)
T PF00682_consen 196 VANALAALEAGADRI--DGTLGGLGERAGNAPLEELVAALERM 236 (237)
T ss_dssp HHHHHHHHHTT-SEE--EEBGGGGSSTTSB-BHHHHHHHHHHT
T ss_pred hHHHHHHHHcCCCEE--EccCccCCCCCCCccHHHHHHHHhhc
Confidence 677888999999994 664 899999999998877666544
No 16
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=96.73 E-value=0.059 Score=49.89 Aligned_cols=134 Identities=16% Similarity=0.199 Sum_probs=91.5
Q ss_pred chhHHHHHHHhhcccccEEEe------------cCccccccChhHHHHHHHHHHhCCceec----CCcHHHHHHHhCCch
Q 022982 39 SHNVLEDIFESMGQFVDGLKF------------SGGSHSLMPKPFIEEVVKRAHQHDVYVS----TGDWAEHLIRNGPSA 102 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKf------------g~GTs~l~p~~~l~eKI~l~~~~gV~v~----~GtlfE~a~~qg~~~ 102 (289)
.+..+..+.+...+|.|++=+ |.|++.+.+++.+.+.++..++.+++|+ +| + ....
T Consensus 78 ~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~-~-------~~~~ 149 (231)
T TIGR00736 78 DLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGN-C-------IPLD 149 (231)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCC-C-------Ccch
Confidence 456777777777777777665 6777889999999999999998888766 34 2 1113
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 022982 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (289)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 182 (289)
..++.+.+.+.|.+.|-|..+.-.-+..+ .++|+++++. +..+|=+|. . | ..+
T Consensus 150 ~~~~a~~l~~aGad~i~Vd~~~~g~~~a~-~~~I~~i~~~-~~~ipIIgN---G-------g-----I~s---------- 202 (231)
T TIGR00736 150 ELIDALNLVDDGFDGIHVDAMYPGKPYAD-MDLLKILSEE-FNDKIIIGN---N-------S-----IDD---------- 202 (231)
T ss_pred HHHHHHHHHHcCCCEEEEeeCCCCCchhh-HHHHHHHHHh-cCCCcEEEE---C-------C-----cCC----------
Confidence 45778889999999999975443222233 4889999884 212444444 1 1 111
Q ss_pred cHHHHHHHHHHHHHccCcEEEEeccccccCC
Q 022982 183 DVDLLIRRAERCLEAGADMIMIDSDDVCKHA 213 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~ 213 (289)
.+.+.+.|++||+.||| +|++..++
T Consensus 203 -----~eda~e~l~~GAd~Vmv-gR~~l~~~ 227 (231)
T TIGR00736 203 -----IESAKEMLKAGADFVSV-ARAILKGN 227 (231)
T ss_pred -----HHHHHHHHHhCCCeEEE-cHhhccCC
Confidence 46666777789999998 56666543
No 17
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=96.72 E-value=0.017 Score=55.86 Aligned_cols=124 Identities=20% Similarity=0.270 Sum_probs=90.5
Q ss_pred ccccEEEecCccccccChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCcc----
Q 022982 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSL---- 125 (289)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~~GtlfE~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti---- 125 (289)
..|+-+-||+||..++|.+.|++.++.++++ ++.. . .|..+.-+|+.+ ++.++.++++||+.|.|.--|.
T Consensus 58 ~~i~~i~~GGGTPs~l~~~~l~~ll~~i~~~~~~~~--~--~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~ 133 (375)
T PRK05628 58 PPVSTVFVGGGTPSLLGAEGLARVLDAVRDTFGLAP--G--AEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHV 133 (375)
T ss_pred CceeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCC--C--CEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHH
Confidence 4589999999999999999999999999874 4422 1 133333344444 5799999999999999987666
Q ss_pred ------cCChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHcc
Q 022982 126 ------EIPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG 198 (289)
Q Consensus 126 ------~i~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAG 198 (289)
..+.++-.+.++.+++.||. |...+-. +. |. +|.+++.+.++..++.|
T Consensus 134 L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~--Gl----------------Pg-------qt~~~~~~tl~~~~~l~ 188 (375)
T PRK05628 134 LAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIY--GT----------------PG-------ESDDDWRASLDAALEAG 188 (375)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEec--cC----------------CC-------CCHHHHHHHHHHHHhcC
Confidence 34566777899999999987 4333222 11 11 14788899999999999
Q ss_pred CcEEEE
Q 022982 199 ADMIMI 204 (289)
Q Consensus 199 A~~Vii 204 (289)
.+.|-+
T Consensus 189 ~~~i~~ 194 (375)
T PRK05628 189 VDHVSA 194 (375)
T ss_pred CCEEEe
Confidence 998843
No 18
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=96.70 E-value=0.015 Score=54.36 Aligned_cols=164 Identities=14% Similarity=0.168 Sum_probs=119.7
Q ss_pred CCceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH
Q 022982 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF 103 (289)
Q Consensus 24 ~GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~ 103 (289)
.=+..+.+++- ...+|+......-||.+.+++..+.+ +.+++-++.++++|..|+.+ +|.+....++.+
T Consensus 72 ~~~~~~~~~~~------~~~~~l~~a~~~gv~~iri~~~~~~~---~~~~~~i~~ak~~G~~v~~~--~~~a~~~~~~~~ 140 (266)
T cd07944 72 TKIAVMVDYGN------DDIDLLEPASGSVVDMIRVAFHKHEF---DEALPLIKAIKEKGYEVFFN--LMAISGYSDEEL 140 (266)
T ss_pred CEEEEEECCCC------CCHHHHHHHhcCCcCEEEEecccccH---HHHHHHHHHHHHCCCeEEEE--EEeecCCCHHHH
Confidence 34455555542 14667777777889999999877644 56999999999999988754 111223456688
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccc
Q 022982 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (289)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~ 183 (289)
.++++.+.+.|.+.|-+.|-+-.+.+++-.++++.++++ +..-..++... =.|
T Consensus 141 ~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~~~~~i~~H~--------------------------Hn~ 193 (266)
T cd07944 141 LELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSN-LDKDIKLGFHA--------------------------HNN 193 (266)
T ss_pred HHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHh-cCCCceEEEEe--------------------------CCC
Confidence 899999999999999999999999999999999999873 11001233321 113
Q ss_pred HHHHHHHHHHHHHccCcEEEEecc--ccccCCCCccHHHHHHHHhc
Q 022982 184 VDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGR 227 (289)
Q Consensus 184 ~~~~I~~~~~dLeAGA~~ViiEar--GI~d~~G~~r~d~v~~ii~~ 227 (289)
...-+..+...++|||+. |++- |+=+..||..++.+-..++.
T Consensus 194 ~Gla~AN~laA~~aGa~~--vd~s~~G~G~~aGN~~~E~~v~~l~~ 237 (266)
T cd07944 194 LQLALANTLEAIELGVEI--IDATVYGMGRGAGNLPTELLLDYLNN 237 (266)
T ss_pred ccHHHHHHHHHHHcCCCE--EEEecccCCCCcCcHHHHHHHHHHHH
Confidence 444577788889999975 6665 88889999999887666643
No 19
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=96.56 E-value=0.046 Score=50.20 Aligned_cols=156 Identities=17% Similarity=0.279 Sum_probs=90.7
Q ss_pred HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------ccCChhHHHHHHHHHHHcCCcccceeeeecC-CCCCCCcc
Q 022982 92 AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFN-KSDIPSDR 163 (289)
Q Consensus 92 fE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt-------i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~-~~evg~~~ 163 (289)
|+.++.++ -.+.+-++.++++||++||++-+. .+.+.+++..+-+.+++.|+++.+ +..-.. ....+ ..
T Consensus 8 ~~~~~~~~-~~~~e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~-~~~~~~~~~~l~-~~ 84 (279)
T TIGR00542 8 YEKALPKG-ECWLERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIPS-MCLSAHRRFPLG-SK 84 (279)
T ss_pred ehhhCCCC-CCHHHHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCcee-eecCCCccCcCC-Cc
Confidence 34555532 368888999999999999997443 356788888899999999998753 111000 00001 11
Q ss_pred ccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccc-cCC-CCccHH------HHHHHHhccCCCceEE
Q 022982 164 DRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVC-KHA-DSLRAD------IIAKVIGRLGLEKTMF 235 (289)
Q Consensus 164 d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~-d~~-G~~r~d------~v~~ii~~l~~eklif 235 (289)
|++ .+ ....+.+-+.++..-+.||..|.+-+.... +.. .+.... .+.++++..|+ +|.+
T Consensus 85 ~~~--------~r----~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv-~l~l 151 (279)
T TIGR00542 85 DKA--------VR----QQGLEIMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAARAQV-TLAV 151 (279)
T ss_pred CHH--------HH----HHHHHHHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCC-EEEE
Confidence 110 00 112445566666677889999998775432 111 111111 23334455555 5788
Q ss_pred ec---C---CchhHHHHHHHhC-CCcccccCCCCc
Q 022982 236 EA---T---NPRTSEWFIRRYG-PKVNLFVDHSQV 263 (289)
Q Consensus 236 EA---P---~k~qQ~~~I~~fG-~~VNLgI~~~eV 263 (289)
|. | ...+-..+++..| |+|.+..|+.++
T Consensus 152 E~~~~~~~~t~~~~~~li~~v~~~~v~~~~D~~h~ 186 (279)
T TIGR00542 152 EIMDTPFMSSISKWLKWDHYLNSPWFTLYPDIGNL 186 (279)
T ss_pred eeCCCchhcCHHHHHHHHHHcCCCceEEEeCcChh
Confidence 85 1 3345567889888 555554566554
No 20
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=96.45 E-value=0.052 Score=50.83 Aligned_cols=151 Identities=19% Similarity=0.271 Sum_probs=98.2
Q ss_pred HHHHHHhhcccccEEEecCccc--------cccChhHHHHHHHHHHhCCceecC-Cc-HHHHHHHhCCc-hHHHHHHHHH
Q 022982 43 LEDIFESMGQFVDGLKFSGGSH--------SLMPKPFIEEVVKRAHQHDVYVST-GD-WAEHLIRNGPS-AFKEYVEDCK 111 (289)
Q Consensus 43 ~~DlLe~ag~yID~lKfg~GTs--------~l~p~~~l~eKI~l~~~~gV~v~~-Gt-lfE~a~~qg~~-~~~~yl~~~k 111 (289)
.-..|..+| ||.+=+|+|++ .-.|.+.+++..+...+..+.... |. +.- +..-|. -.++.++.+.
T Consensus 26 ia~~L~~~G--v~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~--~~~~p~~~~~~di~~~~ 101 (275)
T cd07937 26 IAEALDEAG--FFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVG--YRHYPDDVVELFVEKAA 101 (275)
T ss_pred HHHHHHHcC--CCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccC--ccCCCcHHHHHHHHHHH
Confidence 345677778 99999999884 334444444444333222221110 10 000 111122 3788999999
Q ss_pred HcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHH
Q 022982 112 QVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRA 191 (289)
Q Consensus 112 ~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~ 191 (289)
+.|.+.|-|+...-++ +.-...|+.+++.|++|.. .+....+ + .+ |++.+.+.+
T Consensus 102 ~~g~~~iri~~~~~~~--~~~~~~i~~ak~~G~~v~~--~i~~~~~-------~---------~~------~~~~~~~~~ 155 (275)
T cd07937 102 KNGIDIFRIFDALNDV--RNLEVAIKAVKKAGKHVEG--AICYTGS-------P---------VH------TLEYYVKLA 155 (275)
T ss_pred HcCCCEEEEeecCChH--HHHHHHHHHHHHCCCeEEE--EEEecCC-------C---------CC------CHHHHHHHH
Confidence 9999999998766654 4556799999999987653 4421110 0 01 588889999
Q ss_pred HHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 192 ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 192 ~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
+.-.++||+.|- |.|..|...++.+.++++.+
T Consensus 156 ~~~~~~Ga~~i~-----l~DT~G~~~P~~v~~lv~~l 187 (275)
T cd07937 156 KELEDMGADSIC-----IKDMAGLLTPYAAYELVKAL 187 (275)
T ss_pred HHHHHcCCCEEE-----EcCCCCCCCHHHHHHHHHHH
Confidence 999999999874 68999999999888888654
No 21
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=96.37 E-value=0.031 Score=53.89 Aligned_cols=126 Identities=14% Similarity=0.238 Sum_probs=90.6
Q ss_pred ccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc----
Q 022982 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE---- 126 (289)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~---- 126 (289)
.-|+.+=||+||..+.+++.|.+.++..+++- .+..+ .|+.+.-+|+.+ ++.++.++++|++.|.|+--+.+
T Consensus 50 ~~v~~i~~GGGtPs~l~~~~l~~ll~~i~~~~-~~~~~--~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l 126 (360)
T TIGR00539 50 EPLESIFIGGGTPNTLSVEAFERLFESIYQHA-SLSDD--CEITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKL 126 (360)
T ss_pred CcccEEEeCCCchhcCCHHHHHHHHHHHHHhC-CCCCC--CEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHH
Confidence 34889999999999999999999999987641 11122 344444455554 58899999999999999877663
Q ss_pred ------CChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccC
Q 022982 127 ------IPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 199 (289)
Q Consensus 127 ------i~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA 199 (289)
-+.++-.+.|+.+++.||. +-..+ ..+. |. +|.+++.+.++..++.|+
T Consensus 127 ~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dl--i~Gl----------------Pg-------qt~~~~~~~l~~~~~l~~ 181 (360)
T TIGR00539 127 LFLGRQHSAKNIAPAIETALKSGIENISLDL--MYGL----------------PL-------QTLNSLKEELKLAKELPI 181 (360)
T ss_pred HHhCCCCCHHHHHHHHHHHHHcCCCeEEEec--cCCC----------------CC-------CCHHHHHHHHHHHHccCC
Confidence 4667778899999999986 22211 1111 11 147788888998999999
Q ss_pred cEEEEe
Q 022982 200 DMIMID 205 (289)
Q Consensus 200 ~~ViiE 205 (289)
+.|-+=
T Consensus 182 ~~is~y 187 (360)
T TIGR00539 182 NHLSAY 187 (360)
T ss_pred CEEEee
Confidence 988553
No 22
>PRK05660 HemN family oxidoreductase; Provisional
Probab=96.28 E-value=0.033 Score=54.30 Aligned_cols=125 Identities=14% Similarity=0.237 Sum_probs=91.4
Q ss_pred ccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc----
Q 022982 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE---- 126 (289)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti~---- 126 (289)
.-|+-+=||+||..+.+++.|.+.++.++++= .+.++ .|+.+.-+|+. -++.++.++++||+.|.|+--+.+
T Consensus 57 ~~v~ti~~GGGtPs~l~~~~l~~ll~~l~~~~-~~~~~--~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L 133 (378)
T PRK05660 57 REVHSIFIGGGTPSLFSAEAIQRLLDGVRARL-PFAPD--AEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKL 133 (378)
T ss_pred CceeEEEeCCCccccCCHHHHHHHHHHHHHhC-CCCCC--cEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHH
Confidence 45899999999999999999999999998751 11112 24444444444 358889999999999999877663
Q ss_pred ------CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCc
Q 022982 127 ------IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (289)
Q Consensus 127 ------i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~ 200 (289)
-+.++-.+.|+.+++.||+..+ +....+. |. ++.+.+.+.++..++.|.+
T Consensus 134 ~~l~r~~~~~~~~~ai~~~~~~G~~~v~-~dli~Gl----------------pg-------qt~~~~~~~l~~~~~l~p~ 189 (378)
T PRK05660 134 KRLGRIHGPDEAKRAAKLAQGLGLRSFN-LDLMHGL----------------PD-------QSLEEALDDLRQAIALNPP 189 (378)
T ss_pred HHhCCCCCHHHHHHHHHHHHHcCCCeEE-EEeecCC----------------CC-------CCHHHHHHHHHHHHhcCCC
Confidence 3566777889999999997422 2222221 11 1488889999999999999
Q ss_pred EEE
Q 022982 201 MIM 203 (289)
Q Consensus 201 ~Vi 203 (289)
+|-
T Consensus 190 ~is 192 (378)
T PRK05660 190 HLS 192 (378)
T ss_pred eEE
Confidence 884
No 23
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=96.26 E-value=0.062 Score=52.15 Aligned_cols=125 Identities=14% Similarity=0.182 Sum_probs=93.2
Q ss_pred ccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCcc-----
Q 022982 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSL----- 125 (289)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti----- 125 (289)
..++-+=||+||..+.|.+.|++.++.++++ + .++ .|+.+.-+|+.+ ++.++.+++.|++.|.|.--+.
T Consensus 55 ~~~~tiy~GGGTPs~L~~~~l~~ll~~i~~~-~--~~~--~eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL 129 (353)
T PRK05904 55 KQFKTIYLGGGTPNCLNDQLLDILLSTIKPY-V--DNN--CEFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNIL 129 (353)
T ss_pred CCeEEEEECCCccccCCHHHHHHHHHHHHHh-c--CCC--CeEEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHH
Confidence 5688999999999999999999999999997 2 223 355555566654 6999999999999998876665
Q ss_pred -----cCChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccC
Q 022982 126 -----EIPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 199 (289)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA 199 (289)
.-+.++-.+.|+.+++.||. +-..+ -.+. |. ++.+++.+.++...+.+.
T Consensus 130 ~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dl--I~Gl----------------Pg-------qt~e~~~~tl~~~~~l~p 184 (353)
T PRK05904 130 KQLNRTHTIQDSKEAINLLHKNGIYNISCDF--LYCL----------------PI-------LKLKDLDEVFNFILKHKI 184 (353)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCCCcEEEEE--eecC----------------CC-------CCHHHHHHHHHHHHhcCC
Confidence 34566777899999999986 22222 1111 11 147778888888889999
Q ss_pred cEEEEec
Q 022982 200 DMIMIDS 206 (289)
Q Consensus 200 ~~ViiEa 206 (289)
++|-+-.
T Consensus 185 ~~is~y~ 191 (353)
T PRK05904 185 NHISFYS 191 (353)
T ss_pred CEEEEEe
Confidence 9886655
No 24
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=96.23 E-value=0.27 Score=43.20 Aligned_cols=167 Identities=16% Similarity=0.155 Sum_probs=91.5
Q ss_pred chhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhC-CceecCCc-HHHHHHHhCCchHHHH-HHHHHHcCC
Q 022982 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGD-WAEHLIRNGPSAFKEY-VEDCKQVGF 115 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~~Gt-lfE~a~~qg~~~~~~y-l~~~k~lGF 115 (289)
.+.....+.+..++.||++|+|+ +...+. -++..-++.+.| +..+.-++ ++ +|+ .| ++.+.+.|.
T Consensus 10 ~~~~a~~~~~~l~~~v~~iev~~--~l~~~~-g~~~i~~l~~~~~~~~i~~d~k~~------d~~---~~~~~~~~~~Ga 77 (206)
T TIGR03128 10 DIEEALELAEKVADYVDIIEIGT--PLIKNE-GIEAVKEMKEAFPDRKVLADLKTM------DAG---EYEAEQAFAAGA 77 (206)
T ss_pred CHHHHHHHHHHcccCeeEEEeCC--HHHHHh-CHHHHHHHHHHCCCCEEEEEEeec------cch---HHHHHHHHHcCC
Confidence 45677778888899999999963 333332 232222333333 33333232 22 322 34 677889999
Q ss_pred CEEEecCCcccCChhHHHHHHHHHHHcCCccccee-eeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHH
Q 022982 116 DTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF-AVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERC 194 (289)
Q Consensus 116 ~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~-g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~d 194 (289)
|+|=+.--+ +...-.++++.++++|+++.+++ +. ....+.++..
T Consensus 78 d~i~vh~~~---~~~~~~~~i~~~~~~g~~~~~~~~~~--------------------------------~t~~~~~~~~ 122 (206)
T TIGR03128 78 DIVTVLGVA---DDATIKGAVKAAKKHGKEVQVDLINV--------------------------------KDKVKRAKEL 122 (206)
T ss_pred CEEEEeccC---CHHHHHHHHHHHHHcCCEEEEEecCC--------------------------------CChHHHHHHH
Confidence 999655322 34455789999999998866643 22 0114555666
Q ss_pred HHccCcEEEEeccccc-cCCCCccHHHHHHHHhccCCCceEEecCCchhHHHHHHHhCCC
Q 022982 195 LEAGADMIMIDSDDVC-KHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYGPK 253 (289)
Q Consensus 195 LeAGA~~ViiEarGI~-d~~G~~r~d~v~~ii~~l~~eklifEAP~k~qQ~~~I~~fG~~ 253 (289)
.+.|+++|.+.. |.- ..-+....+.+.++.+.++.-.++..-=-..+-..-+...|.+
T Consensus 123 ~~~g~d~v~~~p-g~~~~~~~~~~~~~i~~l~~~~~~~~i~v~GGI~~~n~~~~~~~Ga~ 181 (206)
T TIGR03128 123 KELGADYIGVHT-GLDEQAKGQNPFEDLQTILKLVKEARVAVAGGINLDTIPDVIKLGPD 181 (206)
T ss_pred HHcCCCEEEEcC-CcCcccCCCCCHHHHHHHHHhcCCCcEEEECCcCHHHHHHHHHcCCC
Confidence 788999998863 111 1122334555666665555323332322222223233355555
No 25
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=96.21 E-value=0.06 Score=53.64 Aligned_cols=127 Identities=17% Similarity=0.354 Sum_probs=89.8
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc-----
Q 022982 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE----- 126 (289)
Q Consensus 53 yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti~----- 126 (289)
-|+-+-||+||..+++++.+.+.++.++++ .....+ .|+.+.-+|+. -++.++.+++.||+.|.|+--+.+
T Consensus 102 ~v~~I~fgGGtP~~l~~~~l~~ll~~i~~~-~~~~~~--~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~ 178 (455)
T TIGR00538 102 HVSQLHWGGGTPTYLSPEQISRLMKLIREN-FPFNAD--AEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQ 178 (455)
T ss_pred ceEEEEECCCCcCCCCHHHHHHHHHHHHHh-CCCCCC--CeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHH
Confidence 477889999999999999999999999986 111112 23333233333 368999999999999999866653
Q ss_pred -----CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcE
Q 022982 127 -----IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 201 (289)
Q Consensus 127 -----i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ 201 (289)
-+.++-.+.|+.+++.|++.. -+....+. |. +|.+.+.+.++..++.|++.
T Consensus 179 ~l~r~~~~~~~~~ai~~l~~~G~~~v-~~dli~Gl----------------Pg-------qt~e~~~~tl~~~~~l~~~~ 234 (455)
T TIGR00538 179 AVNRIQPEEMIFELMNHAREAGFTSI-NIDLIYGL----------------PK-------QTKESFAKTLEKVAELNPDR 234 (455)
T ss_pred HhCCCCCHHHHHHHHHHHHhcCCCcE-EEeEEeeC----------------CC-------CCHHHHHHHHHHHHhcCCCE
Confidence 455666789999999998621 12222221 11 14788889999999999999
Q ss_pred EEEec
Q 022982 202 IMIDS 206 (289)
Q Consensus 202 ViiEa 206 (289)
|-+-.
T Consensus 235 is~y~ 239 (455)
T TIGR00538 235 LAVFN 239 (455)
T ss_pred EEEec
Confidence 86653
No 26
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=96.16 E-value=0.083 Score=51.73 Aligned_cols=149 Identities=18% Similarity=0.209 Sum_probs=110.7
Q ss_pred HHHHHHHhhcccccEEEecCccccccCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHH
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDC 110 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~-----------~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~ 110 (289)
.++..+++ -+|.+-+...+|-++-+ +.+++-++.++++|..|+.+ +|.+-..+++.+.++++.+
T Consensus 80 di~~a~~~---g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~--~ed~~r~~~~~l~~~~~~~ 154 (378)
T PRK11858 80 DIDASIDC---GVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFS--AEDASRTDLDFLIEFAKAA 154 (378)
T ss_pred HHHHHHhC---CcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE--eccCCCCCHHHHHHHHHHH
Confidence 34444443 47888888887776433 45778899999999988765 4555556667889999999
Q ss_pred HHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHH
Q 022982 111 KQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRR 190 (289)
Q Consensus 111 k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~ 190 (289)
.+.|.+.|-+.|-.-.+.+++-.++|+.+++.= .+ .+++.+ .. |...-+-.
T Consensus 155 ~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~~-~~--~l~~H~-Hn-------------------------d~GlA~AN 205 (378)
T PRK11858 155 EEAGADRVRFCDTVGILDPFTMYELVKELVEAV-DI--PIEVHC-HN-------------------------DFGMATAN 205 (378)
T ss_pred HhCCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CC--eEEEEe-cC-------------------------CcCHHHHH
Confidence 999999999999999999999999999998752 22 344432 11 22333666
Q ss_pred HHHHHHccCcEEEEecc--ccccCCCCccHHHHHHHHh
Q 022982 191 AERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIG 226 (289)
Q Consensus 191 ~~~dLeAGA~~ViiEar--GI~d~~G~~r~d~v~~ii~ 226 (289)
+...++|||++| ++- |+=+..||...+.+-..+.
T Consensus 206 ~laAv~aGa~~v--d~tv~GlGeraGNa~lE~vv~~L~ 241 (378)
T PRK11858 206 ALAGIEAGAKQV--HTTVNGLGERAGNAALEEVVMALK 241 (378)
T ss_pred HHHHHHcCCCEE--EEeeccccccccCccHHHHHHHHH
Confidence 777899999975 664 8889999999887766554
No 27
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=96.09 E-value=0.093 Score=52.37 Aligned_cols=126 Identities=20% Similarity=0.392 Sum_probs=91.1
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc----
Q 022982 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE---- 126 (289)
Q Consensus 53 yID~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~~GtlfE~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~---- 126 (289)
-|+-+=||+||..+.|++.|++.++.++++ ++ .++ .|+.+.-+|+.+ ++.++.++++||+.|.|+--+.+
T Consensus 103 ~v~~i~fgGGTPs~l~~~~l~~ll~~i~~~~~~--~~~--~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl 178 (453)
T PRK13347 103 RVSQLHWGGGTPTILNPDQFERLMAALRDAFDF--APE--AEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQ 178 (453)
T ss_pred eEEEEEEcCcccccCCHHHHHHHHHHHHHhCCC--CCC--ceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHH
Confidence 367788999999999999999999999886 22 111 233333334333 78999999999999999876663
Q ss_pred ------CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCc
Q 022982 127 ------IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (289)
Q Consensus 127 ------i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~ 200 (289)
-+.++-.+.|+.+++.||.... +....+. |. +|.+.+.+.++..++.|.+
T Consensus 179 ~~l~R~~~~~~~~~ai~~lr~~G~~~v~-~dli~Gl----------------Pg-------qt~e~~~~tl~~~~~l~p~ 234 (453)
T PRK13347 179 KAINRIQPEEMVARAVELLRAAGFESIN-FDLIYGL----------------PH-------QTVESFRETLDKVIALSPD 234 (453)
T ss_pred HHhCCCCCHHHHHHHHHHHHhcCCCcEE-EeEEEeC----------------CC-------CCHHHHHHHHHHHHhcCCC
Confidence 5677778999999999986211 1111111 11 1488889999999999999
Q ss_pred EEEEec
Q 022982 201 MIMIDS 206 (289)
Q Consensus 201 ~ViiEa 206 (289)
.|-+-+
T Consensus 235 ~i~~y~ 240 (453)
T PRK13347 235 RIAVFG 240 (453)
T ss_pred EEEEec
Confidence 997754
No 28
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=96.04 E-value=0.04 Score=54.18 Aligned_cols=125 Identities=17% Similarity=0.292 Sum_probs=90.9
Q ss_pred ccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCcc-----
Q 022982 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSL----- 125 (289)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti----- 125 (289)
.-|+-+=||+||..++|.+.|++.++..+++ ..+.+. .|+.+.-+|+.+ ++.++.+++.|++.|.|.--|.
T Consensus 65 ~~i~~iy~GGGTps~l~~~~l~~ll~~i~~~-~~~~~~--~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L 141 (400)
T PRK07379 65 QPLQTVFFGGGTPSLLSVEQLERILTTLDQR-FGIAPD--AEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELL 141 (400)
T ss_pred CceeEEEECCCccccCCHHHHHHHHHHHHHh-CCCCCC--CEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHH
Confidence 4589999999999999999999999999876 222222 244443445444 5899999999999998876665
Q ss_pred -----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCc
Q 022982 126 -----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (289)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~ 200 (289)
..+.++-.+.++.+++.||.... +....+. |. +|.+.+.+.++..++.+.+
T Consensus 142 ~~l~R~~~~~~~~~ai~~l~~~G~~~v~-~dlI~Gl----------------Pg-------qt~e~~~~tl~~~~~l~p~ 197 (400)
T PRK07379 142 ALCGRSHRVKDIFAAVDLIHQAGIENFS-LDLISGL----------------PH-------QTLEDWQASLEAAIALNPT 197 (400)
T ss_pred HHhCCCCCHHHHHHHHHHHHHcCCCeEE-EEeecCC----------------CC-------CCHHHHHHHHHHHHcCCCC
Confidence 45677778899999999987211 1222221 11 1478888999999999999
Q ss_pred EEE
Q 022982 201 MIM 203 (289)
Q Consensus 201 ~Vi 203 (289)
.|-
T Consensus 198 ~is 200 (400)
T PRK07379 198 HLS 200 (400)
T ss_pred EEE
Confidence 884
No 29
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=96.02 E-value=0.09 Score=51.15 Aligned_cols=148 Identities=18% Similarity=0.218 Sum_probs=109.1
Q ss_pred hcccccEEEecCccccccCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 022982 50 MGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (289)
Q Consensus 50 ag~yID~lKfg~GTs~l~p~-----------~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~I 118 (289)
...-+|.+-+...+|-++-+ +.+++-|+.++++|..|+.+ +|.+-...++.+.++.+.+.+.|.+.|
T Consensus 82 ~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~--~ed~~r~~~~~l~~~~~~~~~~Ga~~i 159 (365)
T TIGR02660 82 ARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVG--GEDASRADPDFLVELAEVAAEAGADRF 159 (365)
T ss_pred HcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEe--ecCCCCCCHHHHHHHHHHHHHcCcCEE
Confidence 33457888888887754332 23558899999999988765 555555566788899999999999999
Q ss_pred EecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHcc
Q 022982 119 ELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG 198 (289)
Q Consensus 119 EISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAG 198 (289)
-+.|-.--+.+++-.++|+.+++. +.+ .+++.+ .. |...-+-.+...++||
T Consensus 160 ~l~DT~G~~~P~~v~~lv~~l~~~-~~v--~l~~H~-HN-------------------------d~GlA~ANalaA~~aG 210 (365)
T TIGR02660 160 RFADTVGILDPFSTYELVRALRQA-VDL--PLEMHA-HN-------------------------DLGMATANTLAAVRAG 210 (365)
T ss_pred EEcccCCCCCHHHHHHHHHHHHHh-cCC--eEEEEe-cC-------------------------CCChHHHHHHHHHHhC
Confidence 999999999999999999999874 122 244432 11 1223367777889999
Q ss_pred CcEEEEecc--ccccCCCCccHHHHHHHH-hccCC
Q 022982 199 ADMIMIDSD--DVCKHADSLRADIIAKVI-GRLGL 230 (289)
Q Consensus 199 A~~ViiEar--GI~d~~G~~r~d~v~~ii-~~l~~ 230 (289)
|++| ++- |+=+..||.-.+.+-..+ ...|.
T Consensus 211 a~~v--d~tl~GiGeraGN~~lE~lv~~L~~~~g~ 243 (365)
T TIGR02660 211 ATHV--NTTVNGLGERAGNAALEEVAMALKRLLGR 243 (365)
T ss_pred CCEE--EEEeeccccccccCCHHHHHHHHHHhcCC
Confidence 9964 765 888999999888776666 44443
No 30
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=96.00 E-value=0.055 Score=53.91 Aligned_cols=127 Identities=18% Similarity=0.325 Sum_probs=90.7
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc-----
Q 022982 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE----- 126 (289)
Q Consensus 53 yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti~----- 126 (289)
-|+-+=||+||..++|.+.|.+.++.++++- .+.++ .|+.+.-+|+. -++.++.+++.|++.|.|+--+.+
T Consensus 102 ~v~~i~~gGGtPs~l~~~~l~~ll~~l~~~~-~~~~~--~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~ 178 (453)
T PRK09249 102 PVSQLHWGGGTPTFLSPEQLRRLMALLREHF-NFAPD--AEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQK 178 (453)
T ss_pred ceEEEEECCcccccCCHHHHHHHHHHHHHhC-CCCCC--CEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHH
Confidence 4889999999999999999999999998861 11222 12222233333 368999999999999999876663
Q ss_pred -----CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcE
Q 022982 127 -----IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 201 (289)
Q Consensus 127 -----i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ 201 (289)
-+.++-.+.|+.+++.||+.. -+....+. |. ++.+++.+.++..++.|++.
T Consensus 179 ~l~r~~~~~~~~~ai~~l~~~G~~~v-~~dli~Gl----------------Pg-------qt~e~~~~~l~~~~~l~~~~ 234 (453)
T PRK09249 179 AVNRIQPFEFTFALVEAARELGFTSI-NIDLIYGL----------------PK-------QTPESFARTLEKVLELRPDR 234 (453)
T ss_pred HhCCCCCHHHHHHHHHHHHHcCCCcE-EEEEEccC----------------CC-------CCHHHHHHHHHHHHhcCCCE
Confidence 566777899999999998421 12222221 11 14778888999999999998
Q ss_pred EEEec
Q 022982 202 IMIDS 206 (289)
Q Consensus 202 ViiEa 206 (289)
|-+-.
T Consensus 235 i~~y~ 239 (453)
T PRK09249 235 LAVFN 239 (453)
T ss_pred EEEcc
Confidence 87654
No 31
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=95.95 E-value=0.16 Score=47.08 Aligned_cols=158 Identities=17% Similarity=0.154 Sum_probs=109.6
Q ss_pred HHHHHHHhhc-ccccEEEecCcccccc-----------ChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHH
Q 022982 42 VLEDIFESMG-QFVDGLKFSGGSHSLM-----------PKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVED 109 (289)
Q Consensus 42 ~~~DlLe~ag-~yID~lKfg~GTs~l~-----------p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~ 109 (289)
.++..++.-. ..+|.+.+...+|-+. .-+.+++-++.++++|..++.+. |.+-...++.+.++.+.
T Consensus 74 ~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~--~~~~~~~~~~~~~~~~~ 151 (268)
T cd07940 74 DIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSA--EDATRTDLDFLIEVVEA 151 (268)
T ss_pred hHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEee--ecCCCCCHHHHHHHHHH
Confidence 4444444322 2289998877665442 11457788999999999888542 22223345577888899
Q ss_pred HHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHH
Q 022982 110 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (289)
Q Consensus 110 ~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~ 189 (289)
+.++|.+.|-+.|-+-.+.+++-.++++.+++.==..-..++..+ . .|...-+.
T Consensus 152 ~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~-H-------------------------n~~GlA~A 205 (268)
T cd07940 152 AIEAGATTINIPDTVGYLTPEEFGELIKKLKENVPNIKVPISVHC-H-------------------------NDLGLAVA 205 (268)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCCceeEEEEe-c-------------------------CCcchHHH
Confidence 999999999999999999999999999999984100001233322 1 12334467
Q ss_pred HHHHHHHccCcEEEEecc--ccccCCCCccHHHHHHHHhccC
Q 022982 190 RAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLG 229 (289)
Q Consensus 190 ~~~~dLeAGA~~ViiEar--GI~d~~G~~r~d~v~~ii~~l~ 229 (289)
.+...+++||++| ++. |+=+..||..++.+-..++..+
T Consensus 206 n~laAi~aG~~~i--D~s~~GlG~~aGN~~tE~lv~~L~~~~ 245 (268)
T cd07940 206 NSLAAVEAGARQV--ECTINGIGERAGNAALEEVVMALKTRY 245 (268)
T ss_pred HHHHHHHhCCCEE--EEEeeccccccccccHHHHHHHHHhcc
Confidence 7778899999964 775 8889999999998877775543
No 32
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=95.89 E-value=0.17 Score=47.97 Aligned_cols=151 Identities=17% Similarity=0.244 Sum_probs=99.0
Q ss_pred EEecCccccccChhHHHHHHHHHHhCC--ceecCCcHHHHHHHhCCchHHHHHHHHHHcCC-CEEEecCCcc--------
Q 022982 57 LKFSGGSHSLMPKPFIEEVVKRAHQHD--VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGF-DTIELNVGSL-------- 125 (289)
Q Consensus 57 lKfg~GTs~l~p~~~l~eKI~l~~~~g--V~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF-~~IEISdGti-------- 125 (289)
+=||.||....|.+.|++.++.++++. +.++-+|=-+.+ +...-+.++.+++.|+ ..||+.-=|.
T Consensus 81 iyf~ggt~t~l~~~~L~~l~~~i~~~~~~~~isi~trpd~l----~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i 156 (302)
T TIGR01212 81 AYFQAYTNTYAPVEVLKEMYEQALSYDDVVGLSVGTRPDCV----PDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKI 156 (302)
T ss_pred EEEECCCcCCCCHHHHHHHHHHHhCCCCEEEEEEEecCCcC----CHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHH
Confidence 668999999999999999999998753 122222211111 1133456666667799 4688853333
Q ss_pred --cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEE
Q 022982 126 --EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIM 203 (289)
Q Consensus 126 --~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~Vi 203 (289)
..+.++..+.++.++++|++|...+=+ +. |. ++.+++++.++...+.+.+.|-
T Consensus 157 ~Rg~t~~~~~~ai~~l~~~gi~v~~~lI~--Gl----------------Pg-------et~e~~~~t~~~l~~l~~d~i~ 211 (302)
T TIGR01212 157 NRGHDFACYVDAVKRARKRGIKVCSHVIL--GL----------------PG-------EDREEMMETAKIVSLLDVDGIK 211 (302)
T ss_pred cCcChHHHHHHHHHHHHHcCCEEEEeEEE--CC----------------CC-------CCHHHHHHHHHHHHhcCCCEEE
Confidence 235678889999999999987665433 21 11 1478888999999999999776
Q ss_pred E------ecccccc--CCCCcc-------HHHHHHHHhccCCCceEEe
Q 022982 204 I------DSDDVCK--HADSLR-------ADIIAKVIGRLGLEKTMFE 236 (289)
Q Consensus 204 i------EarGI~d--~~G~~r-------~d~v~~ii~~l~~eklifE 236 (289)
+ ++-.+++ ..|.+. .+++..+++.++++.+|+-
T Consensus 212 i~~l~~~pgT~L~~~~~~g~~~~~~~~e~~~~~~~~l~~l~~~~~i~R 259 (302)
T TIGR01212 212 IHPLHVVKGTKMAKMYEKGELKTLSLEEYISLACDFLEHLPPEVVIHR 259 (302)
T ss_pred EEEEEecCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCcCeEEEE
Confidence 5 2222322 234443 3455667788888888776
No 33
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=95.77 E-value=0.15 Score=48.34 Aligned_cols=150 Identities=16% Similarity=0.120 Sum_probs=104.1
Q ss_pred cccccEEEecCccccccChh-----------HHHHHHHHHHhCCceec------CCcHHHHHHHhCCchHHHHHHHHHHc
Q 022982 51 GQFVDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVYVS------TGDWAEHLIRNGPSAFKEYVEDCKQV 113 (289)
Q Consensus 51 g~yID~lKfg~GTs~l~p~~-----------~l~eKI~l~~~~gV~v~------~GtlfE~a~~qg~~~~~~yl~~~k~l 113 (289)
..-+|.+-+...+|-.+.+. .+++-|+.++++|..+. .|..++. .-.++.+.++.+.+.++
T Consensus 90 ~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 167 (287)
T PRK05692 90 AAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEG--EVPPEAVADVAERLFAL 167 (287)
T ss_pred HcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCC--CCCHHHHHHHHHHHHHc
Confidence 33577777777776553332 37789999999999874 2333333 23455788899999999
Q ss_pred CCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHH
Q 022982 114 GFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAER 193 (289)
Q Consensus 114 GF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~ 193 (289)
|.+.|-+.|-.--+.+.+-.++++.+++. +.. ..+++.+ ..+ ...-+..+-.
T Consensus 168 G~d~i~l~DT~G~~~P~~v~~lv~~l~~~-~~~-~~i~~H~-Hn~-------------------------~Gla~AN~la 219 (287)
T PRK05692 168 GCYEISLGDTIGVGTPGQVRAVLEAVLAE-FPA-ERLAGHF-HDT-------------------------YGQALANIYA 219 (287)
T ss_pred CCcEEEeccccCccCHHHHHHHHHHHHHh-CCC-CeEEEEe-cCC-------------------------CCcHHHHHHH
Confidence 99999999999999999999999999984 211 1345533 111 2223667778
Q ss_pred HHHccCcEEEEecccccc------CCCCccHHHHHHHHhccCC
Q 022982 194 CLEAGADMIMIDSDDVCK------HADSLRADIIAKVIGRLGL 230 (289)
Q Consensus 194 dLeAGA~~ViiEarGI~d------~~G~~r~d~v~~ii~~l~~ 230 (289)
.++|||++|=.=--||=. ..||.-++.+-..++..|.
T Consensus 220 A~~aG~~~id~s~~GlGecpfa~g~aGN~~~E~lv~~L~~~g~ 262 (287)
T PRK05692 220 SLEEGITVFDASVGGLGGCPYAPGASGNVATEDVLYMLHGLGI 262 (287)
T ss_pred HHHhCCCEEEEEccccCCCCCCCCccccccHHHHHHHHHhcCC
Confidence 899999974332237765 6899888877666655443
No 34
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=95.76 E-value=0.14 Score=50.09 Aligned_cols=157 Identities=15% Similarity=0.123 Sum_probs=107.0
Q ss_pred hhHHHHHHHhhcccccEEEecCcccccc--------ChhHH---HHHHHHHHhCCceec------CCcHHHHHHHhCCch
Q 022982 40 HNVLEDIFESMGQFVDGLKFSGGSHSLM--------PKPFI---EEVVKRAHQHDVYVS------TGDWAEHLIRNGPSA 102 (289)
Q Consensus 40 ~~~~~DlLe~ag~yID~lKfg~GTs~l~--------p~~~l---~eKI~l~~~~gV~v~------~GtlfE~a~~qg~~~ 102 (289)
.+.++..+++- +|.+-+...+|-.+ +++.+ ++-|++++++|..+. .|..++. .-+++.
T Consensus 124 ~~die~A~~~g---~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~--r~~~~~ 198 (347)
T PLN02746 124 LKGFEAAIAAG---AKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEG--PVPPSK 198 (347)
T ss_pred HHHHHHHHHcC---cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccC--CCCHHH
Confidence 34555556553 45666665554322 33333 489999999999773 2433332 235568
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 022982 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (289)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 182 (289)
+.++.+.+.+.|.+.|-|.|-.--+.+.+-.++++.+++. +. ..+++..+. .
T Consensus 199 l~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~-~~-~~~i~~H~H-n------------------------- 250 (347)
T PLN02746 199 VAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAV-VP-VDKLAVHFH-D------------------------- 250 (347)
T ss_pred HHHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHh-CC-CCeEEEEEC-C-------------------------
Confidence 8899999999999999999999999999999999999874 32 123566431 1
Q ss_pred cHHHHHHHHHHHHHccCcEEEEecccccc------CCCCccHHHHHHHHhccC
Q 022982 183 DVDLLIRRAERCLEAGADMIMIDSDDVCK------HADSLRADIIAKVIGRLG 229 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAGA~~ViiEarGI~d------~~G~~r~d~v~~ii~~l~ 229 (289)
|...-+-.+-..++|||++|=.=--||=. ..||.-++.+-..++.+|
T Consensus 251 d~GlA~AN~lAA~~aGa~~vd~sv~GlGecPfa~graGN~atE~lv~~L~~~G 303 (347)
T PLN02746 251 TYGQALANILVSLQMGISTVDSSVAGLGGCPYAKGASGNVATEDVVYMLNGLG 303 (347)
T ss_pred CCChHHHHHHHHHHhCCCEEEEecccccCCCCCCCCCCChhHHHHHHHHHhcC
Confidence 12334677788999999975333347765 789988877766665444
No 35
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=95.74 E-value=0.33 Score=44.81 Aligned_cols=147 Identities=17% Similarity=0.154 Sum_probs=97.7
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCC
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 177 (289)
+.+.++++++.+.|.+.|=+...+ ..|+.++|.++++.+.+.- ...+.+-.+ |+
T Consensus 18 ~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~---~~~~~vi~g---v~----------------- 74 (281)
T cd00408 18 DALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAV---AGRVPVIAG---VG----------------- 74 (281)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHh---CCCCeEEEe---cC-----------------
Confidence 478899999999999999665443 4899999999999998841 111111110 11
Q ss_pred ccccccHHHHHHHHHHHHHccCcEEEEecc-------------------------ccccCC----CCccHHHHHHHHhcc
Q 022982 178 TEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKHA----DSLRADIIAKVIGRL 228 (289)
Q Consensus 178 ~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-------------------------GI~d~~----G~~r~d~v~~ii~~l 228 (289)
..+..+.+++++..-++||+.|++=.- -||+.- -.+..+++.++++ .
T Consensus 75 ---~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~-~ 150 (281)
T cd00408 75 ---ANSTREAIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAE-H 150 (281)
T ss_pred ---CccHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHhc-C
Confidence 113678899999999999999999763 145443 2455777777764 3
Q ss_pred C-CCceEEecCCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022982 229 G-LEKTMFEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 275 (289)
Q Consensus 229 ~-~eklifEAP~k~qQ~~~I~~fG~~VNLgI~~~eVl~LE~LR~g~~G 275 (289)
+ +-=+=...++..+...+++..++++.+..-. |-.-++.|..|--|
T Consensus 151 ~~v~giK~s~~d~~~~~~~~~~~~~~~~v~~G~-d~~~~~~l~~G~~G 197 (281)
T cd00408 151 PNIVGIKDSSGDLDRLTRLIALLGPDFAVLSGD-DDLLLPALALGADG 197 (281)
T ss_pred CCEEEEEeCCCCHHHHHHHHHhcCCCeEEEEcc-hHHHHHHHHcCCCE
Confidence 2 2222234566777777888887777775444 55666777766544
No 36
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=95.74 E-value=0.27 Score=45.90 Aligned_cols=144 Identities=15% Similarity=0.166 Sum_probs=90.5
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcc----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCC
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVGSL----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti----~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~ 176 (289)
+.++++++++.+.|.+.|=+. |+. .|+.++|.++++.+.+. +...+-+-. .|+
T Consensus 22 ~~l~~~i~~l~~~Gv~gi~~~-Gs~GE~~~ls~~Er~~~~~~~~~~---~~~~~~vi~---gv~---------------- 78 (292)
T PRK03170 22 AALRKLVDYLIANGTDGLVVV-GTTGESPTLTHEEHEELIRAVVEA---VNGRVPVIA---GTG---------------- 78 (292)
T ss_pred HHHHHHHHHHHHcCCCEEEEC-CcCCccccCCHHHHHHHHHHHHHH---hCCCCcEEe---ecC----------------
Confidence 368889999999999999884 665 89999999999999884 111111110 011
Q ss_pred CccccccHHHHHHHHHHHHHccCcEEEEecc-------------------------ccccC---CC-CccHHHHHHHHhc
Q 022982 177 STEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKH---AD-SLRADIIAKVIGR 227 (289)
Q Consensus 177 ~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-------------------------GI~d~---~G-~~r~d~v~~ii~~ 227 (289)
..+.++.+++++..-++||+.|++=.- -||+. .| .+..+++.++. +
T Consensus 79 ----~~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~pv~lYn~P~~~g~~l~~~~~~~L~-~ 153 (292)
T PRK03170 79 ----SNSTAEAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATDLPIILYNVPGRTGVDILPETVARLA-E 153 (292)
T ss_pred ----CchHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHH-c
Confidence 114788899999999999999999552 14442 12 34566666663 3
Q ss_pred cCCCceEE--e-cCCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022982 228 LGLEKTMF--E-ATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 275 (289)
Q Consensus 228 l~~eklif--E-AP~k~qQ~~~I~~fG~~VNLgI~~~eVl~LE~LR~g~~G 275 (289)
.| +++. + .++..+-..++++++++..++...++. -+.+++.|.-|
T Consensus 154 ~p--~v~giK~s~~d~~~~~~~~~~~~~~~~v~~G~d~~-~~~~l~~G~~G 201 (292)
T PRK03170 154 HP--NIVGIKEATGDLERVSELIELVPDDFAVYSGDDAL-ALPFLALGGVG 201 (292)
T ss_pred CC--CEEEEEECCCCHHHHHHHHHhCCCCeEEEECChHh-HHHHHHcCCCE
Confidence 32 2221 2 334455555666666665555444443 35667766544
No 37
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=95.71 E-value=0.2 Score=46.76 Aligned_cols=145 Identities=14% Similarity=0.125 Sum_probs=102.2
Q ss_pred cccccEEEecCccccccCh-----------hHHHHHHHHHHhCCceecCC-c-HHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022982 51 GQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTG-D-WAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (289)
Q Consensus 51 g~yID~lKfg~GTs~l~p~-----------~~l~eKI~l~~~~gV~v~~G-t-lfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (289)
..-+|.+.+...+|-.+.+ +.+++-++++|++|..|+.+ . +++. ....++.+.++++.+.+.|.+.
T Consensus 89 ~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~-~~~~~~~~~~~~~~~~~~g~~~ 167 (273)
T cd07941 89 EAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDG-YKANPEYALATLKAAAEAGADW 167 (273)
T ss_pred hCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEecccc-CCCCHHHHHHHHHHHHhCCCCE
Confidence 3356777777666544322 24688999999999988775 2 3231 1223456778888889999999
Q ss_pred EEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHc
Q 022982 118 IELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEA 197 (289)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeA 197 (289)
|-|.|-.-.+.+++-.++++.++++ +. -..++..+ .. |...-...+...++|
T Consensus 168 i~l~DT~G~~~P~~v~~lv~~l~~~-~~-~~~l~~H~-Hn-------------------------d~Gla~An~laA~~a 219 (273)
T cd07941 168 LVLCDTNGGTLPHEIAEIVKEVRER-LP-GVPLGIHA-HN-------------------------DSGLAVANSLAAVEA 219 (273)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHh-CC-CCeeEEEe-cC-------------------------CCCcHHHHHHHHHHc
Confidence 9999999999999999999999984 11 01244432 11 122336777788999
Q ss_pred cCcEEEEecc--ccccCCCCccHHHHHHHHh
Q 022982 198 GADMIMIDSD--DVCKHADSLRADIIAKVIG 226 (289)
Q Consensus 198 GA~~ViiEar--GI~d~~G~~r~d~v~~ii~ 226 (289)
||++ +++. |+=+..||...+.+-..+.
T Consensus 220 Ga~~--id~s~~GlGeraGn~~~e~~~~~L~ 248 (273)
T cd07941 220 GATQ--VQGTINGYGERCGNANLCSIIPNLQ 248 (273)
T ss_pred CCCE--EEEeccccccccccccHHHHHHHHH
Confidence 9996 6665 8999999998877665554
No 38
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=95.68 E-value=0.13 Score=51.05 Aligned_cols=127 Identities=11% Similarity=0.226 Sum_probs=89.3
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc------
Q 022982 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE------ 126 (289)
Q Consensus 54 ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~------ 126 (289)
+.-+=||+||-.+++.+.|++.++.++++- .+.++. .|+.+.-+|+.+ ++.++.++++||+.|.|.--|.+
T Consensus 92 i~~i~~GGGTPs~l~~~~l~~Ll~~i~~~~-~~~~~~-~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~ 169 (430)
T PRK08208 92 FASFAVGGGTPTLLNAAELEKLFDSVERVL-GVDLGN-IPKSVETSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHA 169 (430)
T ss_pred eeEEEEcCCccccCCHHHHHHHHHHHHHhC-CCCCCC-ceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHH
Confidence 667789999999999999999999998652 122211 133333344444 78999999999999999877762
Q ss_pred ----CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEE
Q 022982 127 ----IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMI 202 (289)
Q Consensus 127 ----i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~V 202 (289)
-+.++-.+.|+.+++.||.+.. +....+. |. +|.+.+.+.++..++.|.+.|
T Consensus 170 l~R~~~~~~~~~ai~~l~~~g~~~i~-~dlI~Gl----------------P~-------qt~e~~~~~l~~~~~l~~~~i 225 (430)
T PRK08208 170 LHRPQKRADVHQALEWIRAAGFPILN-IDLIYGI----------------PG-------QTHASWMESLDQALVYRPEEL 225 (430)
T ss_pred hCCCCCHHHHHHHHHHHHHcCCCeEE-EEeecCC----------------CC-------CCHHHHHHHHHHHHhCCCCEE
Confidence 3556777899999999987421 2222221 11 147788888888899999987
Q ss_pred EEec
Q 022982 203 MIDS 206 (289)
Q Consensus 203 iiEa 206 (289)
-+=.
T Consensus 226 s~y~ 229 (430)
T PRK08208 226 FLYP 229 (430)
T ss_pred EEcc
Confidence 6554
No 39
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=95.64 E-value=0.24 Score=45.94 Aligned_cols=144 Identities=15% Similarity=0.189 Sum_probs=92.8
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcc----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCC
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVGSL----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti----~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~ 176 (289)
+.+.++++++.+.|.+.|=+. ||. .|+.++|.++++.+.+. +...+-+-.+ |+
T Consensus 21 ~~~~~~i~~l~~~Gv~gl~v~-GstGE~~~lt~~Er~~l~~~~~~~---~~~~~~vi~g---v~---------------- 77 (284)
T cd00950 21 DALERLIEFQIENGTDGLVVC-GTTGESPTLSDEEHEAVIEAVVEA---VNGRVPVIAG---TG---------------- 77 (284)
T ss_pred HHHHHHHHHHHHcCCCEEEEC-CCCcchhhCCHHHHHHHHHHHHHH---hCCCCcEEec---cC----------------
Confidence 468899999999999999887 666 99999999999999884 1111111110 11
Q ss_pred CccccccHHHHHHHHHHHHHccCcEEEEeccc-------------------------cccCC---C-CccHHHHHHHHhc
Q 022982 177 STEYVEDVDLLIRRAERCLEAGADMIMIDSDD-------------------------VCKHA---D-SLRADIIAKVIGR 227 (289)
Q Consensus 177 ~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarG-------------------------I~d~~---G-~~r~d~v~~ii~~ 227 (289)
..+.++.+++++..-++||+.|++=.-. ||+.- | .+..+++.+|++
T Consensus 78 ----~~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~pi~lYn~P~~~g~~ls~~~~~~L~~- 152 (284)
T cd00950 78 ----SNNTAEAIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATDLPVILYNVPGRTGVNIEPETVLRLAE- 152 (284)
T ss_pred ----CccHHHHHHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcCCCCEEEEEChhHhCCCCCHHHHHHHhc-
Confidence 1147788999999999999999997631 45432 2 455667777764
Q ss_pred cCCCceE-E-ec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022982 228 LGLEKTM-F-EA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 275 (289)
Q Consensus 228 l~~ekli-f-EA-P~k~qQ~~~I~~fG~~VNLgI~~~eVl~LE~LR~g~~G 275 (289)
.| +++ + ++ ++...-..+++++++++.+....++ .-+..++.|--|
T Consensus 153 ~p--~v~giK~s~~~~~~~~~~~~~~~~~~~v~~G~d~-~~~~~~~~G~~G 200 (284)
T cd00950 153 HP--NIVGIKEATGDLDRVSELIALCPDDFAVLSGDDA-LTLPFLALGGVG 200 (284)
T ss_pred CC--CEEEEEECCCCHHHHHHHHHhCCCCeEEEeCChH-hHHHHHHCCCCE
Confidence 32 221 1 22 3444445566777777766544443 345666655433
No 40
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=95.62 E-value=0.35 Score=45.41 Aligned_cols=143 Identities=18% Similarity=0.174 Sum_probs=100.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccCC
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~ 175 (289)
.++++++++-+.|.+.|=+.-.| ..|+.++|.++++.+.+. | +.|+ +|+ +
T Consensus 22 ~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi--~gv-------~--------------- 77 (289)
T cd00951 22 AYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVL--AGA-------G--------------- 77 (289)
T ss_pred HHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEE--Eec-------C---------------
Confidence 68888999999999999765443 589999999999998884 1 1111 111 0
Q ss_pred CCccccccHHHHHHHHHHHHHccCcEEEEecc-------------------------ccccCCC-CccHHHHHHHHhccC
Q 022982 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKHAD-SLRADIIAKVIGRLG 229 (289)
Q Consensus 176 ~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-------------------------GI~d~~G-~~r~d~v~~ii~~l~ 229 (289)
. +..+.++.+++.-++||+.|++=.- -||+..| .+..+++.++.++.+
T Consensus 78 -----~-~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~~g~~l~~~~l~~L~~~~p 151 (289)
T cd00951 78 -----Y-GTATAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYNRANAVLTADSLARLAERCP 151 (289)
T ss_pred -----C-CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHhcCC
Confidence 1 3677799999999999999998541 2687766 577888888875344
Q ss_pred CCceEE--e-cCCchhHHHHHHHhCCCcccccCC--CCchhhhhhhcccCCC
Q 022982 230 LEKTMF--E-ATNPRTSEWFIRRYGPKVNLFVDH--SQVMDLECLRGRNLGK 276 (289)
Q Consensus 230 ~eklif--E-AP~k~qQ~~~I~~fG~~VNLgI~~--~eVl~LE~LR~g~~G~ 276 (289)
+|+. + ..+-.+...+++.++.+..+..-+ .|.+.++++..|--|-
T Consensus 152 --nivgiKds~~d~~~~~~~~~~~~~~~~v~~G~~~~d~~~~~~l~~Ga~G~ 201 (289)
T cd00951 152 --NLVGFKDGVGDIELMRRIVAKLGDRLLYLGGLPTAEVFALAYLAMGVPTY 201 (289)
T ss_pred --CEEEEEeCCCCHHHHHHHHHhcCCCeEEEeCCCcchHhHHHHHHCCCCEE
Confidence 3332 3 355566677788887766554333 5888888888775553
No 41
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=95.50 E-value=0.56 Score=43.82 Aligned_cols=144 Identities=15% Similarity=0.200 Sum_probs=99.2
Q ss_pred HHHHHHHhhcccccEEEecCcccc---------ccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHH
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHS---------LMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQ 112 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~---------l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~ 112 (289)
.+-..|+.+| ||++=+||.++. ..+++.+++...+.+ .+.++.. | ........+.++.+.+
T Consensus 24 ~ia~~L~~~G--Vd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~--~-----~~~~~~~~~~l~~a~~ 93 (266)
T cd07944 24 AIYRALAAAG--IDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAV--M-----VDYGNDDIDLLEPASG 93 (266)
T ss_pred HHHHHHHHCC--CCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEE--E-----ECCCCCCHHHHHHHhc
Confidence 4456677887 999999986553 234666777766653 1222221 0 1110023567888899
Q ss_pred cCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHH
Q 022982 113 VGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAE 192 (289)
Q Consensus 113 lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~ 192 (289)
.|++.|-|+...-.+ +.-.+.|+.++++|++|. ++..+.. .+ +++.+++.++
T Consensus 94 ~gv~~iri~~~~~~~--~~~~~~i~~ak~~G~~v~--~~~~~a~------------------~~------~~~~~~~~~~ 145 (266)
T cd07944 94 SVVDMIRVAFHKHEF--DEALPLIKAIKEKGYEVF--FNLMAIS------------------GY------SDEELLELLE 145 (266)
T ss_pred CCcCEEEEecccccH--HHHHHHHHHHHHCCCeEE--EEEEeec------------------CC------CHHHHHHHHH
Confidence 999999998755543 445679999999998754 5553311 01 5888899999
Q ss_pred HHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 193 RCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 193 ~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
...++||+.|. |.|..|...+..+.+++..+
T Consensus 146 ~~~~~g~~~i~-----l~DT~G~~~P~~v~~lv~~l 176 (266)
T cd07944 146 LVNEIKPDVFY-----IVDSFGSMYPEDIKRIISLL 176 (266)
T ss_pred HHHhCCCCEEE-----EecCCCCCCHHHHHHHHHHH
Confidence 99999999874 78899999999999988743
No 42
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=95.50 E-value=0.16 Score=49.07 Aligned_cols=124 Identities=14% Similarity=0.246 Sum_probs=86.0
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc-----
Q 022982 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE----- 126 (289)
Q Consensus 53 yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti~----- 126 (289)
.++.+=||+||..+.+.+.+++..+..+++++. ++ .|+.+.-+|+. -++.++.+++.|++.|.|+--+.+
T Consensus 51 ~~~~i~~gGGtps~l~~~~l~~L~~~i~~~~~~--~~--~eitie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L~ 126 (374)
T PRK05799 51 KIKSIFIGGGTPTYLSLEALEILKETIKKLNKK--ED--LEFTVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLLK 126 (374)
T ss_pred ceeEEEECCCcccCCCHHHHHHHHHHHHhCCCC--CC--CEEEEEeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHH
Confidence 478899999999999999999888888765542 22 13333223333 468999999999999988766552
Q ss_pred -----CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcE
Q 022982 127 -----IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 201 (289)
Q Consensus 127 -----i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ 201 (289)
-+.++-.+.|+.+++.||.... +....+. |. +|.+++.+.++..++.|.+.
T Consensus 127 ~l~R~~~~~~~~~ai~~l~~~g~~~v~-~dli~Gl----------------Pg-------qt~e~~~~~l~~~~~l~~~~ 182 (374)
T PRK05799 127 YLGRIHTFEEFLENYKLARKLGFNNIN-VDLMFGL----------------PN-------QTLEDWKETLEKVVELNPEH 182 (374)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCCCcEE-EEeecCC----------------CC-------CCHHHHHHHHHHHHhcCCCE
Confidence 3456677889999999986111 2222221 11 14788888899899999998
Q ss_pred EEE
Q 022982 202 IMI 204 (289)
Q Consensus 202 Vii 204 (289)
|-+
T Consensus 183 is~ 185 (374)
T PRK05799 183 ISC 185 (374)
T ss_pred EEE
Confidence 744
No 43
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=95.48 E-value=0.59 Score=44.28 Aligned_cols=144 Identities=17% Similarity=0.173 Sum_probs=102.8
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccC
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 174 (289)
+.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. | ..|+ +|+ +
T Consensus 28 ~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi--~gv-------~-------------- 84 (303)
T PRK03620 28 AAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVI--AGA-------G-------------- 84 (303)
T ss_pred HHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEE--Eec-------C--------------
Confidence 368888999999999999774433 589999999999988773 0 1111 122 0
Q ss_pred CCCccccccHHHHHHHHHHHHHccCcEEEEecc-------------------------ccccCCC-CccHHHHHHHHhcc
Q 022982 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKHAD-SLRADIIAKVIGRL 228 (289)
Q Consensus 175 ~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-------------------------GI~d~~G-~~r~d~v~~ii~~l 228 (289)
. +..+.++++++.-++||+.|++=.- -||+..| .+-.+++.++.++.
T Consensus 85 ------~-~t~~~i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn~~g~~l~~~~l~~L~~~~ 157 (303)
T PRK03620 85 ------G-GTAQAIEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYNRDNAVLTADTLARLAERC 157 (303)
T ss_pred ------C-CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHhhC
Confidence 1 3677899999999999999998652 2687766 67788888888555
Q ss_pred CCCceEE---ecCCchhHHHHHHHhCCCcccc--cCCCCchhhhhhhcccCCC
Q 022982 229 GLEKTMF---EATNPRTSEWFIRRYGPKVNLF--VDHSQVMDLECLRGRNLGK 276 (289)
Q Consensus 229 ~~eklif---EAP~k~qQ~~~I~~fG~~VNLg--I~~~eVl~LE~LR~g~~G~ 276 (289)
+ +|+. ..++..+...++++++++..+. -+.+|.+.+.++..|.-|-
T Consensus 158 p--ni~giK~s~~d~~~~~~~~~~~~~~f~vl~G~d~~e~~~~~~~~~G~~G~ 208 (303)
T PRK03620 158 P--NLVGFKDGVGDIELMQRIVRALGDRLLYLGGLPTAEVFAAAYLALGVPTY 208 (303)
T ss_pred C--CEEEEEeCCCCHHHHHHHHHHcCCCeEEEeCCCcchhhHHHHHhCCCCEE
Confidence 4 4444 3567777788888888876654 4445777788887665553
No 44
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=95.47 E-value=0.46 Score=44.73 Aligned_cols=146 Identities=18% Similarity=0.165 Sum_probs=100.8
Q ss_pred chHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCC
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 177 (289)
+.+.+.++++.+.|++.|=+.-. +..|+.++|.++++.+.+. +.-.+-+-. -||
T Consensus 26 ~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~---~~g~~pvi~---gv~----------------- 82 (296)
T TIGR03249 26 AAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVST---AKGKVPVYT---GVG----------------- 82 (296)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHH---hCCCCcEEE---ecC-----------------
Confidence 36888999999999999987433 2689999999999998883 111111100 011
Q ss_pred ccccccHHHHHHHHHHHHHccCcEEEEecc-------------------------ccccCCC-CccHHHHHHHHhccCCC
Q 022982 178 TEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKHAD-SLRADIIAKVIGRLGLE 231 (289)
Q Consensus 178 ~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-------------------------GI~d~~G-~~r~d~v~~ii~~l~~e 231 (289)
. +..+.+++++..-++|||.|++=.- =||+..| ++-.+++.+++++.+
T Consensus 83 ---~-~t~~ai~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn~~g~~l~~~~~~~La~~~~-- 156 (296)
T TIGR03249 83 ---G-NTSDAIEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQRDNAVLNADTLERLADRCP-- 156 (296)
T ss_pred ---c-cHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHhhCC--
Confidence 1 3677899999999999999998551 1677666 677888888876555
Q ss_pred ceEE---ecCCchhHHHHHHHhCCCcccc--cCCCCchhhhhhhcccCC
Q 022982 232 KTMF---EATNPRTSEWFIRRYGPKVNLF--VDHSQVMDLECLRGRNLG 275 (289)
Q Consensus 232 klif---EAP~k~qQ~~~I~~fG~~VNLg--I~~~eVl~LE~LR~g~~G 275 (289)
+|+. ..++..+...++++++++..+. -+..|.+.++++..|--|
T Consensus 157 nvvgiKds~~d~~~~~~~~~~~~~~~~v~~G~~~~d~~~~~~~~~Ga~G 205 (296)
T TIGR03249 157 NLVGFKDGIGDMEQMIEITQRLGDRLGYLGGMPTAEVTAPAYLPLGVTS 205 (296)
T ss_pred CEEEEEeCCCCHHHHHHHHHHcCCCeEEEeCCCcchhhHHHHHhCCCCE
Confidence 3332 3567777777888888766554 333577788887765433
No 45
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=95.41 E-value=0.2 Score=48.84 Aligned_cols=141 Identities=16% Similarity=0.199 Sum_probs=102.7
Q ss_pred ccEEEecCccccccCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 022982 54 VDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 122 (289)
Q Consensus 54 ID~lKfg~GTs~l~p~-----------~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISd 122 (289)
+|.+-+...+|-.+.+ +.+.+-++.++++|..+..+ +|.+....++.+.++++.+.++|.+.|-+.|
T Consensus 85 ~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~--~eda~r~~~~~l~~~~~~~~~~g~~~i~l~D 162 (363)
T TIGR02090 85 VDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFS--AEDATRTDIDFLIKVFKRAEEAGADRINIAD 162 (363)
T ss_pred cCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEE--EeecCCCCHHHHHHHHHHHHhCCCCEEEEeC
Confidence 7777777776655321 35668888999999877643 2444455566788888889999999999999
Q ss_pred CcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEE
Q 022982 123 GSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMI 202 (289)
Q Consensus 123 Gti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~V 202 (289)
-.-.+.+++-.++|+.++++ +.+ .++..+ .. |...-+-.+...++|||++
T Consensus 163 T~G~~~P~~v~~li~~l~~~-~~~--~l~~H~-Hn-------------------------d~GlA~AN~laA~~aGa~~- 212 (363)
T TIGR02090 163 TVGVLTPQKMEELIKKLKEN-VKL--PISVHC-HN-------------------------DFGLATANSIAGVKAGAEQ- 212 (363)
T ss_pred CCCccCHHHHHHHHHHHhcc-cCc--eEEEEe-cC-------------------------CCChHHHHHHHHHHCCCCE-
Confidence 99999999999999999874 121 244422 11 1223366777889999986
Q ss_pred EEecc--ccccCCCCccHHHHHHHHhc
Q 022982 203 MIDSD--DVCKHADSLRADIIAKVIGR 227 (289)
Q Consensus 203 iiEar--GI~d~~G~~r~d~v~~ii~~ 227 (289)
|++- |+=+..||...+.+-..+..
T Consensus 213 -vd~s~~GlGeraGN~~lE~vv~~L~~ 238 (363)
T TIGR02090 213 -VHVTVNGIGERAGNAALEEVVMALKY 238 (363)
T ss_pred -EEEEeeccccccccccHHHHHHHHHH
Confidence 5554 89899999998877666644
No 46
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=95.39 E-value=0.14 Score=45.99 Aligned_cols=144 Identities=18% Similarity=0.225 Sum_probs=94.9
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (289)
.+-..|..+| ||.+=.|+....-.+.+.+++-.+.... ..+. +|.- .+...++.-++.+++.|.+.|.+.
T Consensus 18 ~i~~~L~~~G--v~~iEvg~~~~~~~~~~~v~~~~~~~~~--~~~~--~~~~----~~~~~i~~~~~~~~~~g~~~i~i~ 87 (237)
T PF00682_consen 18 EIAKALDEAG--VDYIEVGFPFASEDDFEQVRRLREALPN--ARLQ--ALCR----ANEEDIERAVEAAKEAGIDIIRIF 87 (237)
T ss_dssp HHHHHHHHHT--TSEEEEEHCTSSHHHHHHHHHHHHHHHS--SEEE--EEEE----SCHHHHHHHHHHHHHTTSSEEEEE
T ss_pred HHHHHHHHhC--CCEEEEcccccCHHHHHHhhhhhhhhcc--cccc--eeee----ehHHHHHHHHHhhHhccCCEEEec
Confidence 3445677777 8888888555555555567766666666 2221 1111 121235555677889999999998
Q ss_pred CCcccC--------C----hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHH
Q 022982 122 VGSLEI--------P----EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (289)
Q Consensus 122 dGti~i--------~----~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~ 189 (289)
...-++ + .+.-.++|+.+++.|++| .|+..+.. -.+++.+.+
T Consensus 88 ~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v--~~~~~~~~------------------------~~~~~~~~~ 141 (237)
T PF00682_consen 88 ISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV--AFGCEDAS------------------------RTDPEELLE 141 (237)
T ss_dssp EETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE--EEEETTTG------------------------GSSHHHHHH
T ss_pred CcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce--EeCccccc------------------------cccHHHHHH
Confidence 655441 1 234457899999999998 55553210 015889999
Q ss_pred HHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHh
Q 022982 190 RAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIG 226 (289)
Q Consensus 190 ~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~ 226 (289)
.+++..++|++.| .|.|..|...++.+.++++
T Consensus 142 ~~~~~~~~g~~~i-----~l~Dt~G~~~P~~v~~lv~ 173 (237)
T PF00682_consen 142 LAEALAEAGADII-----YLADTVGIMTPEDVAELVR 173 (237)
T ss_dssp HHHHHHHHT-SEE-----EEEETTS-S-HHHHHHHHH
T ss_pred HHHHHHHcCCeEE-----EeeCccCCcCHHHHHHHHH
Confidence 9999999999988 4788889999988888876
No 47
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=95.36 E-value=0.35 Score=42.99 Aligned_cols=37 Identities=22% Similarity=0.185 Sum_probs=26.4
Q ss_pred chhHHHHHHHhhcccccEEEecCccccccChhHHHHH
Q 022982 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEV 75 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eK 75 (289)
.......+++..++++|++|.|..-..-+..+.+++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~vk~g~~l~~~~G~~~v~~i 50 (215)
T PRK13813 14 DRERALKIAEELDDYVDAIKVGWPLVLASGLGIIEEL 50 (215)
T ss_pred CHHHHHHHHHhccccCCEEEEcHHHHHhhCHHHHHHH
Confidence 4567788999999999999999655444554444433
No 48
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=95.29 E-value=0.2 Score=47.92 Aligned_cols=112 Identities=18% Similarity=0.315 Sum_probs=75.6
Q ss_pred cChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCc
Q 022982 67 MPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (289)
Q Consensus 67 ~p~~~l~eKI~l~~~~gV~v~~G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~ 145 (289)
++.+.|++-|+.+++.-=.++ | .++ +... ..++.++.+.+.|.+.|.++-|. |. ++|+++++.|.+
T Consensus 45 ~~~~~l~~~i~~~~~~t~~pf-gvn~~---~~~~--~~~~~~~~~~~~~v~~v~~~~g~---p~----~~i~~lk~~g~~ 111 (307)
T TIGR03151 45 APPDVVRKEIRKVKELTDKPF-GVNIM---LLSP--FVDELVDLVIEEKVPVVTTGAGN---PG----KYIPRLKENGVK 111 (307)
T ss_pred CCHHHHHHHHHHHHHhcCCCc-EEeee---cCCC--CHHHHHHHHHhCCCCEEEEcCCC---cH----HHHHHHHHcCCE
Confidence 467789999999987521111 2 221 1122 56888999999999999998663 32 489999998877
Q ss_pred ccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEecc---ccccCCCCc-cHHHH
Q 022982 146 AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD---DVCKHADSL-RADII 221 (289)
Q Consensus 146 v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar---GI~d~~G~~-r~d~v 221 (289)
|.+.++- ++.+++..++|||.|+++++ |-. |.. ..+++
T Consensus 112 v~~~v~s-----------------------------------~~~a~~a~~~GaD~Ivv~g~eagGh~---g~~~~~~ll 153 (307)
T TIGR03151 112 VIPVVAS-----------------------------------VALAKRMEKAGADAVIAEGMESGGHI---GELTTMALV 153 (307)
T ss_pred EEEEcCC-----------------------------------HHHHHHHHHcCCCEEEEECcccCCCC---CCCcHHHHH
Confidence 6643311 45677788999999999887 322 222 35667
Q ss_pred HHHHhccC
Q 022982 222 AKVIGRLG 229 (289)
Q Consensus 222 ~~ii~~l~ 229 (289)
.++.+.++
T Consensus 154 ~~v~~~~~ 161 (307)
T TIGR03151 154 PQVVDAVS 161 (307)
T ss_pred HHHHHHhC
Confidence 77766554
No 49
>PRK01060 endonuclease IV; Provisional
Probab=95.25 E-value=0.35 Score=44.21 Aligned_cols=148 Identities=15% Similarity=0.252 Sum_probs=80.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cc---cCChhHHHHHHHHHHHcCCcccceeeeecCCC-CCCCccccccccccccC
Q 022982 102 AFKEYVEDCKQVGFDTIELNVG---SL---EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKS-DIPSDRDRAFGAYVARA 174 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti---~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~-evg~~~d~~~~~~~~~~ 174 (289)
.+++.++.++++||++||+.-+ +. .++++...++-+.+++.|+++.+ +.+..+.. ... ..|++.
T Consensus 13 ~~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~~~~-~~~h~~~~~nl~-~~d~~~------- 83 (281)
T PRK01060 13 GLEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGISPED-ILVHAPYLINLG-NPNKEI------- 83 (281)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCCCCc-eEEecceEecCC-CCCHHH-------
Confidence 3788899999999999999754 22 45666777777788899998421 11111100 000 111100
Q ss_pred CCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCC--cc---HHHHHHHHhccCCCceEEecC---------Cc
Q 022982 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADS--LR---ADIIAKVIGRLGLEKTMFEAT---------NP 240 (289)
Q Consensus 175 ~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~--~r---~d~v~~ii~~l~~eklifEAP---------~k 240 (289)
...+.+.+.+.++..-+.||..|++-.-..+...-. .. .+.+.++++.-.-=+|.+|.- ..
T Consensus 84 -----r~~s~~~~~~~i~~A~~lga~~vv~h~G~~~~~~~~~~~~~~~~e~l~~l~~~~~gv~l~iEn~~~~~~~~~~~~ 158 (281)
T PRK01060 84 -----LEKSRDFLIQEIERCAALGAKLLVFHPGSHLGDIDEEDCLARIAESLNEALDKTQGVTIVLENTAGQGSELGRRF 158 (281)
T ss_pred -----HHHHHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcHHHHHHHHHHHHHHHHhcCCCCEEEEecCCCCCCcccCCH
Confidence 011245566666666688999999865332211110 00 113333432212235788862 23
Q ss_pred hhHHHHHHHhCCC--cccccCCCCc
Q 022982 241 RTSEWFIRRYGPK--VNLFVDHSQV 263 (289)
Q Consensus 241 ~qQ~~~I~~fG~~--VNLgI~~~eV 263 (289)
.+-..+++.++.. |.+.+|..++
T Consensus 159 ~~~~~l~~~v~~~~~vg~~lD~gH~ 183 (281)
T PRK01060 159 EELARIIDGVEDKSRVGVCLDTCHA 183 (281)
T ss_pred HHHHHHHHhcCCcccEEEEEeHHhH
Confidence 4566788888753 4444665544
No 50
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=95.23 E-value=0.4 Score=44.31 Aligned_cols=123 Identities=18% Similarity=0.213 Sum_probs=80.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc-----------ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGS-----------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAY 170 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt-----------i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~ 170 (289)
.+.+.++.+.+.|+..|=|-|+. --+|.+++.+.|+.+++.-=.. +++-+-- . -|.-
T Consensus 85 ~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~-~~~~IiA---R----TDa~---- 152 (243)
T cd00377 85 NVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDL-PDFVIIA---R----TDAL---- 152 (243)
T ss_pred HHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhcc-CCeEEEE---E----cCch----
Confidence 44555677777999999996655 4679999999999888841111 4555421 1 1110
Q ss_pred cccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecCCch-hHHHHHHH
Q 022982 171 VARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPR-TSEWFIRR 249 (289)
Q Consensus 171 ~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklifEAP~k~-qQ~~~I~~ 249 (289)
+. +..+.++.|+++++..+||||.|++++-- ..+.+.++.+.++.--++.-.|..+ ....=+.+
T Consensus 153 -----~~--~~~~~~eai~Ra~ay~~AGAD~v~v~~~~--------~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~l~~ 217 (243)
T cd00377 153 -----LA--GEEGLDEAIERAKAYAEAGADGIFVEGLK--------DPEEIRAFAEAPDVPLNVNMTPGGNLLTVAELAE 217 (243)
T ss_pred -----hc--cCCCHHHHHHHHHHHHHcCCCEEEeCCCC--------CHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHH
Confidence 00 01248899999999999999999999752 5588888988877555555555543 23333444
Q ss_pred hC
Q 022982 250 YG 251 (289)
Q Consensus 250 fG 251 (289)
.|
T Consensus 218 lG 219 (243)
T cd00377 218 LG 219 (243)
T ss_pred CC
Confidence 44
No 51
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.49 Score=46.34 Aligned_cols=145 Identities=17% Similarity=0.176 Sum_probs=94.7
Q ss_pred HHHHHHHhhcccccEEEecCc-----ccc-ccChhHHHHHHHHHHhCCceec-CC-cHHHHHHHhCCchHHHHHHHHHHc
Q 022982 42 VLEDIFESMGQFVDGLKFSGG-----SHS-LMPKPFIEEVVKRAHQHDVYVS-TG-DWAEHLIRNGPSAFKEYVEDCKQV 113 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~G-----Ts~-l~p~~~l~eKI~l~~~~gV~v~-~G-tlfE~a~~qg~~~~~~yl~~~k~l 113 (289)
.++++-.......|-+=+|.- ..+ -++.+.|++-|+++|+||+++| +. +++--.-. ..+.+|++.+.++
T Consensus 15 ~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~---~~~~~~l~~l~e~ 91 (347)
T COG0826 15 NLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDEL---ETLERYLDRLVEL 91 (347)
T ss_pred CHHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchh---hHHHHHHHHHHHc
Confidence 555555554444788777743 122 2455669999999999999666 34 54322111 1478999999999
Q ss_pred CCCEEEecCCcccCChhHHHHHHHHHHHcC--CcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHH
Q 022982 114 GFDTIELNVGSLEIPEETLLRYVRLVKSAG--LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRA 191 (289)
Q Consensus 114 GF~~IEISdGti~i~~~~r~~lI~~~~~~G--~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~ 191 (289)
|.|+|+++| .-+|+.+++.| +. +.+....+ + .- .+.+
T Consensus 92 GvDaviv~D----------pg~i~l~~e~~p~l~----ih~S~q~~-------------v--~N------------~~~~ 130 (347)
T COG0826 92 GVDAVIVAD----------PGLIMLARERGPDLP----IHVSTQAN-------------V--TN------------AETA 130 (347)
T ss_pred CCCEEEEcC----------HHHHHHHHHhCCCCc----EEEeeeEe-------------c--CC------------HHHH
Confidence 999999999 57899999977 43 33311100 0 00 3666
Q ss_pred HHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccC---CCceEEecC
Q 022982 192 ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG---LEKTMFEAT 238 (289)
Q Consensus 192 ~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~---~eklifEAP 238 (289)
+-.-+.||..| |=+| +++.+.|.+|.++.+ +|-+++.|=
T Consensus 131 ~f~~~~G~~rv-Vl~r-------Els~~ei~~i~~~~~~veiEvfVhGal 172 (347)
T COG0826 131 KFWKELGAKRV-VLPR-------ELSLEEIKEIKEQTPDVEIEVFVHGAL 172 (347)
T ss_pred HHHHHcCCEEE-EeCc-------cCCHHHHHHHHHhCCCceEEEEEecch
Confidence 77778895554 4455 556777888887764 556666653
No 52
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=95.22 E-value=0.25 Score=50.30 Aligned_cols=128 Identities=15% Similarity=0.260 Sum_probs=91.6
Q ss_pred ccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHh-CCch-HHHHHHHHHHcCCCEEEecCCccc---
Q 022982 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRN-GPSA-FKEYVEDCKQVGFDTIELNVGSLE--- 126 (289)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~q-g~~~-~~~yl~~~k~lGF~~IEISdGti~--- 126 (289)
.-|+.+=||+||-.+.+.+.+.+.++.++++-..+. ..-|+.+.- .|+. -++.++.+++.|++.|.|+--|.+
T Consensus 217 ~~v~tIyfGGGTPt~L~~~~L~~Ll~~i~~~f~~~~--~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~d~v 294 (488)
T PRK08207 217 LKITTIYFGGGTPTSLTAEELERLLEEIYENFPDVK--NVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQTMNDET 294 (488)
T ss_pred CceeEEEEeCCCccCCCHHHHHHHHHHHHHhccccC--CceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCcCCHHH
Confidence 358899999999999999999999999987521111 111333322 2322 368899999999999999887774
Q ss_pred -------CChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHcc
Q 022982 127 -------IPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG 198 (289)
Q Consensus 127 -------i~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAG 198 (289)
-+.++-.+.++.+++.||. +...+ -.+. |. ++.+++.+.++..++.+
T Consensus 295 Lk~igR~ht~e~v~~ai~~ar~~Gf~~In~DL--I~GL----------------Pg-------Et~ed~~~tl~~l~~L~ 349 (488)
T PRK08207 295 LKAIGRHHTVEDIIEKFHLAREMGFDNINMDL--IIGL----------------PG-------EGLEEVKHTLEEIEKLN 349 (488)
T ss_pred HHHhCCCCCHHHHHHHHHHHHhCCCCeEEEEE--EeCC----------------CC-------CCHHHHHHHHHHHHhcC
Confidence 6778888999999999994 32222 1111 11 14788889999999999
Q ss_pred CcEEEEec
Q 022982 199 ADMIMIDS 206 (289)
Q Consensus 199 A~~ViiEa 206 (289)
.+.|-+=.
T Consensus 350 pd~isv~~ 357 (488)
T PRK08207 350 PESLTVHT 357 (488)
T ss_pred cCEEEEEe
Confidence 99887654
No 53
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=95.20 E-value=0.27 Score=46.44 Aligned_cols=150 Identities=15% Similarity=0.147 Sum_probs=104.3
Q ss_pred HHHHHHHhhcccccEEEecCccccccChh-----------HHHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHH
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVE 108 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~-----------~l~eKI~l~~~~gV~v~~G--tlfE~a~~qg~~~~~~yl~ 108 (289)
.++..+++- +|.+.+...+|-.+.+. .+++-|+.++++|..+..+ +|.- .+.-.|+.+.++.+
T Consensus 79 ~~~~A~~~g---~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~-~~r~~~~~~~~~~~ 154 (280)
T cd07945 79 SVDWIKSAG---AKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSN-GMRDSPDYVFQLVD 154 (280)
T ss_pred HHHHHHHCC---CCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCC-CCcCCHHHHHHHHH
Confidence 344444443 45566666665444332 2566689999999977764 3221 11345678899999
Q ss_pred HHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHH
Q 022982 109 DCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 188 (289)
Q Consensus 109 ~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I 188 (289)
.+.++|.+.|-+.|-.--+.+.+-.++++.+++. + ....++..+. . |...-+
T Consensus 155 ~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~-~-~~~~i~~H~H-n-------------------------d~Gla~ 206 (280)
T cd07945 155 FLSDLPIKRIMLPDTLGILSPFETYTYISDMVKR-Y-PNLHFDFHAH-N-------------------------DYDLAV 206 (280)
T ss_pred HHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHhh-C-CCCeEEEEeC-C-------------------------CCCHHH
Confidence 9999999999999999999999999999999873 1 1123444321 1 233346
Q ss_pred HHHHHHHHccCcEEEEecc--ccccCCCCccHHHHHHHH
Q 022982 189 RRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVI 225 (289)
Q Consensus 189 ~~~~~dLeAGA~~ViiEar--GI~d~~G~~r~d~v~~ii 225 (289)
..+...++|||++ +++- |+=+..||..++.+-..+
T Consensus 207 AN~laA~~aGa~~--vd~s~~GlGe~aGN~~~E~~v~~L 243 (280)
T cd07945 207 ANVLAAVKAGIKG--LHTTVNGLGERAGNAPLASVIAVL 243 (280)
T ss_pred HHHHHHHHhCCCE--EEEecccccccccCccHHHHHHHH
Confidence 7778899999995 6665 888999999888776666
No 54
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=95.19 E-value=0.67 Score=44.86 Aligned_cols=125 Identities=15% Similarity=0.247 Sum_probs=88.4
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCcc-----
Q 022982 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSL----- 125 (289)
Q Consensus 53 yID~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~~GtlfE~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti----- 125 (289)
-|+.+=||+||..+.+++.|++.++.++++ ++. + ..|+.+.-+|+. -++.++.+++.|++.|.|+--|.
T Consensus 51 ~i~~i~~gGGtpt~l~~~~l~~ll~~i~~~~~~~--~--~~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l 126 (377)
T PRK08599 51 KLKTIYIGGGTPTALSAEQLERLLTAIHRNLPLS--G--LEEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELL 126 (377)
T ss_pred ceeEEEeCCCCcccCCHHHHHHHHHHHHHhCCCC--C--CCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHH
Confidence 367788899999999999999999999986 321 0 012222223333 36889999999999999987776
Q ss_pred -----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCc
Q 022982 126 -----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (289)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~ 200 (289)
..+.++..+.|+.+++.|+.... +....+. |. +|.+++.+.++...+.|.+
T Consensus 127 ~~l~r~~~~~~~~~~i~~l~~~g~~~v~-~dli~Gl----------------Pg-------qt~~~~~~~l~~~~~l~~~ 182 (377)
T PRK08599 127 KKIGRTHNEEDVYEAIANAKKAGFDNIS-IDLIYAL----------------PG-------QTIEDFKESLAKALALDIP 182 (377)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCCCcEE-EeeecCC----------------CC-------CCHHHHHHHHHHHHccCCC
Confidence 35677888999999999986321 1222221 11 1477788888888899999
Q ss_pred EEEEe
Q 022982 201 MIMID 205 (289)
Q Consensus 201 ~ViiE 205 (289)
.|-+-
T Consensus 183 ~i~~y 187 (377)
T PRK08599 183 HYSAY 187 (377)
T ss_pred EEeee
Confidence 88553
No 55
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=95.15 E-value=0.31 Score=44.79 Aligned_cols=124 Identities=17% Similarity=0.144 Sum_probs=82.2
Q ss_pred hhHHHHHHHhhcccccEE------------EecCccccccChhHHHHHHHHHHhCCceecC---CcHHHHHHHhCCchHH
Q 022982 40 HNVLEDIFESMGQFVDGL------------KFSGGSHSLMPKPFIEEVVKRAHQHDVYVST---GDWAEHLIRNGPSAFK 104 (289)
Q Consensus 40 ~~~~~DlLe~ag~yID~l------------Kfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~---GtlfE~a~~qg~~~~~ 104 (289)
+..+....+...+|.|++ |-|.|+..+.+++.+.+.++-.++.+++|+- .+|- . ...
T Consensus 84 ~~~~~~aa~~~~~~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~~~pVsvKir~g~~------~--~~~ 155 (233)
T cd02911 84 LEPLLNAAALVAKNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKETGVPVSVKIRAGVD------V--DDE 155 (233)
T ss_pred HHHHHHHHHHHhhcCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhcCCCEEEEEcCCcC------c--CHH
Confidence 555555555555555555 4467888888899999999999998887773 2331 1 456
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccH
Q 022982 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184 (289)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~ 184 (289)
+..+.+.+.|.|+|-++.+.-. +..+ .++|++++ .. +|=++. . | ..+
T Consensus 156 ~la~~l~~aG~d~ihv~~~~~g-~~ad-~~~I~~i~-~~---ipVIgn---G-------g-----I~s------------ 202 (233)
T cd02911 156 ELARLIEKAGADIIHVDAMDPG-NHAD-LKKIRDIS-TE---LFIIGN---N-------S-----VTT------------ 202 (233)
T ss_pred HHHHHHHHhCCCEEEECcCCCC-CCCc-HHHHHHhc-CC---CEEEEE---C-------C-----cCC------------
Confidence 7778889999999999876543 2223 36777775 11 343443 1 1 111
Q ss_pred HHHHHHHHHHHHccCcEEEEeccc
Q 022982 185 DLLIRRAERCLEAGADMIMIDSDD 208 (289)
Q Consensus 185 ~~~I~~~~~dLeAGA~~ViiEarG 208 (289)
.+.+++.++.|||.||| ||+
T Consensus 203 ---~eda~~~l~~GaD~Vmi-GR~ 222 (233)
T cd02911 203 ---IESAKEMFSYGADMVSV-ARA 222 (233)
T ss_pred ---HHHHHHHHHcCCCEEEE-cCC
Confidence 46667777889999998 554
No 56
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=95.15 E-value=0.34 Score=45.37 Aligned_cols=75 Identities=17% Similarity=0.191 Sum_probs=51.8
Q ss_pred HHHHHHhhcccccEEEecCcc--------ccccChhHHHHHHHHHHhC-CceecC--CcHHHHHHHhCCchHHHHHHHHH
Q 022982 43 LEDIFESMGQFVDGLKFSGGS--------HSLMPKPFIEEVVKRAHQH-DVYVST--GDWAEHLIRNGPSAFKEYVEDCK 111 (289)
Q Consensus 43 ~~DlLe~ag~yID~lKfg~GT--------s~l~p~~~l~eKI~l~~~~-gV~v~~--GtlfE~a~~qg~~~~~~yl~~~k 111 (289)
..+.++.++.|.|++=+-.|| +....++.+.+.++-.++. ++++.- .. +.+...++.+.+.
T Consensus 108 ~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~--------~~~~~~~~a~~l~ 179 (300)
T TIGR01037 108 VAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSP--------NVTDITEIAKAAE 179 (300)
T ss_pred HHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECCC--------ChhhHHHHHHHHH
Confidence 344444455678888776664 4556778899999998875 665553 21 1124667888899
Q ss_pred HcCCCEEEecCCcc
Q 022982 112 QVGFDTIELNVGSL 125 (289)
Q Consensus 112 ~lGF~~IEISdGti 125 (289)
+.|.|.|.|++++-
T Consensus 180 ~~G~d~i~v~nt~~ 193 (300)
T TIGR01037 180 EAGADGLTLINTLR 193 (300)
T ss_pred HcCCCEEEEEccCC
Confidence 99999999997653
No 57
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=95.11 E-value=0.22 Score=50.28 Aligned_cols=155 Identities=14% Similarity=0.169 Sum_probs=108.3
Q ss_pred HHHHHHHh-hcccccEEEecCccccccChhHHHHHHHHHHhCCceec--CC-cHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022982 42 VLEDIFES-MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS--TG-DWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (289)
Q Consensus 42 ~~~DlLe~-ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~--~G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (289)
..+..++. +..-||.+-+....+-+ +++++-|+.++++|..+. .. ++-. ...++.+.++.+.+.+.|.+.
T Consensus 97 vv~~~v~~A~~~Gvd~irif~~lnd~---~n~~~~v~~ak~~G~~v~~~i~~t~~p---~~~~~~~~~~a~~l~~~Gad~ 170 (448)
T PRK12331 97 VVESFVQKSVENGIDIIRIFDALNDV---RNLETAVKATKKAGGHAQVAISYTTSP---VHTIDYFVKLAKEMQEMGADS 170 (448)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecCcH---HHHHHHHHHHHHcCCeEEEEEEeecCC---CCCHHHHHHHHHHHHHcCCCE
Confidence 44555555 44459999988866655 369999999999996532 11 1111 133456777888889999999
Q ss_pred EEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHc
Q 022982 118 IELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEA 197 (289)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeA 197 (289)
|=|.|-.--+.+.+-.++|+.+++. +. ..+++.+ ... ...-+-.+-..++|
T Consensus 171 I~i~Dt~G~l~P~~v~~lv~alk~~-~~--~pi~~H~-Hnt-------------------------~GlA~AN~laAiea 221 (448)
T PRK12331 171 ICIKDMAGILTPYVAYELVKRIKEA-VT--VPLEVHT-HAT-------------------------SGIAEMTYLKAIEA 221 (448)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHh-cC--CeEEEEe-cCC-------------------------CCcHHHHHHHHHHc
Confidence 9999999999999999999999984 22 1244422 111 22236677778999
Q ss_pred cCcEEEEeccccccCCCCccHHHHHHHHhccCCC
Q 022982 198 GADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE 231 (289)
Q Consensus 198 GA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~e 231 (289)
||+.|=.=-.|+-...||..++.+-..++..|.+
T Consensus 222 Gad~vD~sv~glg~gaGN~~tE~lv~~L~~~g~~ 255 (448)
T PRK12331 222 GADIIDTAISPFAGGTSQPATESMVAALQDLGYD 255 (448)
T ss_pred CCCEEEeeccccCCCcCCHhHHHHHHHHHhcCCC
Confidence 9996533334888889999988877777666643
No 58
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=95.09 E-value=0.13 Score=50.06 Aligned_cols=125 Identities=14% Similarity=0.220 Sum_probs=85.8
Q ss_pred ccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHH-HHHHHHHHcCCCEEEecCCcc-----
Q 022982 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFK-EYVEDCKQVGFDTIELNVGSL----- 125 (289)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~-~yl~~~k~lGF~~IEISdGti----- 125 (289)
.-|+-+=||+||..+.|.+.|++.++.++++= .+.+ -.|+.+.-+|+.++ ++++.+++.||+.|.|---|.
T Consensus 54 ~~i~tiy~GGGTPs~l~~~~L~~ll~~i~~~f-~~~~--~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL 130 (380)
T PRK09057 54 RTLTSIFFGGGTPSLMQPETVAALLDAIARLW-PVAD--DIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADL 130 (380)
T ss_pred CCcCeEEeCCCccccCCHHHHHHHHHHHHHhC-CCCC--CccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHH
Confidence 35889999999999999999999999998731 1111 13555555565554 899999999999988865554
Q ss_pred -----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCc
Q 022982 126 -----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (289)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~ 200 (289)
.-+.++-.+.++.+++.+..|--.+ ..+. |. ++.+.+.+.++..++.+.+
T Consensus 131 ~~l~R~~~~~~~~~ai~~~~~~~~~v~~dl--i~Gl----------------Pg-------qt~~~~~~~l~~~~~l~p~ 185 (380)
T PRK09057 131 RFLGRLHSVAEALAAIDLAREIFPRVSFDL--IYAR----------------PG-------QTLAAWRAELKEALSLAAD 185 (380)
T ss_pred HHcCCCCCHHHHHHHHHHHHHhCccEEEEe--ecCC----------------CC-------CCHHHHHHHHHHHHhcCCC
Confidence 2345555678888888744322222 1111 11 1467778888889999999
Q ss_pred EEEE
Q 022982 201 MIMI 204 (289)
Q Consensus 201 ~Vii 204 (289)
.|-+
T Consensus 186 ~is~ 189 (380)
T PRK09057 186 HLSL 189 (380)
T ss_pred eEEe
Confidence 7644
No 59
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=95.06 E-value=0.3 Score=45.72 Aligned_cols=151 Identities=15% Similarity=0.139 Sum_probs=105.5
Q ss_pred hhHHHHHHHhhcccccEEEecCcccccc-----------ChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHH
Q 022982 40 HNVLEDIFESMGQFVDGLKFSGGSHSLM-----------PKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVE 108 (289)
Q Consensus 40 ~~~~~DlLe~ag~yID~lKfg~GTs~l~-----------p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~ 108 (289)
...++-.+++ =+|.+-+...+|-.+ .-+.+++-++.++++|+.|+.+- |.+..-.++.+.++++
T Consensus 74 ~~di~~a~~~---g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~--eda~r~~~~~l~~~~~ 148 (262)
T cd07948 74 MDDARIAVET---GVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS--EDSFRSDLVDLLRVYR 148 (262)
T ss_pred HHHHHHHHHc---CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE--EeeCCCCHHHHHHHHH
Confidence 3455555554 456666655544221 12345666799999998777542 3333344567889999
Q ss_pred HHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHH
Q 022982 109 DCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 188 (289)
Q Consensus 109 ~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I 188 (289)
.+.++|.+.|-+.|-+--+.+++-.++++.+++. +. .+++..+. . |...-+
T Consensus 149 ~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~-~~--~~i~~H~H-n-------------------------~~Gla~ 199 (262)
T cd07948 149 AVDKLGVNRVGIADTVGIATPRQVYELVRTLRGV-VS--CDIEFHGH-N-------------------------DTGCAI 199 (262)
T ss_pred HHHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHh-cC--CeEEEEEC-C-------------------------CCChHH
Confidence 9999999999999999999999999999999885 22 34555331 1 122236
Q ss_pred HHHHHHHHccCcEEEEecc--ccccCCCCccHHHHHHHHh
Q 022982 189 RRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIG 226 (289)
Q Consensus 189 ~~~~~dLeAGA~~ViiEar--GI~d~~G~~r~d~v~~ii~ 226 (289)
-.+...++|||++ +++. |+=+..||.-.+.+-..+.
T Consensus 200 an~~~a~~aG~~~--vd~s~~GlGeraGn~~~e~~~~~l~ 237 (262)
T cd07948 200 ANAYAALEAGATH--IDTTVLGIGERNGITPLGGLIARMY 237 (262)
T ss_pred HHHHHHHHhCCCE--EEEeccccccccCCccHHHHHHHHH
Confidence 6777789999995 7776 9999999998887766664
No 60
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=94.91 E-value=0.68 Score=44.47 Aligned_cols=200 Identities=11% Similarity=0.113 Sum_probs=118.8
Q ss_pred chhHHHHHHHhhcc-cccEEEecCccccccChhHHHHHHHHHHhC--CceecCCcHHHHHHH--hCCchHHHHHHHHHHc
Q 022982 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIR--NGPSAFKEYVEDCKQV 113 (289)
Q Consensus 39 g~~~~~DlLe~ag~-yID~lKfg~GTs~l~p~~~l~eKI~l~~~~--gV~v~~GtlfE~a~~--qg~~~~~~yl~~~k~l 113 (289)
.+.++.+.++.+-+ .+.-+-|..|.....+.+.+.+.++..+++ ++.++.-|-.|+.+. ...-..++.++..|+.
T Consensus 71 s~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeA 150 (343)
T TIGR03551 71 SLEEIAERAAEAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEA 150 (343)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 45555555544444 477788888877777888899999999998 455554355565332 2112468999999999
Q ss_pred CCCEEE-ecCCcc-----------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 022982 114 GFDTIE-LNVGSL-----------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (289)
Q Consensus 114 GF~~IE-ISdGti-----------~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 181 (289)
|++.+- .+.-+. .++.++|.+.|+.+++.|+++-+ |.-.+..|
T Consensus 151 Gl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s--~~i~G~~E----------------------- 205 (343)
T TIGR03551 151 GLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTA--TIMYGHVE----------------------- 205 (343)
T ss_pred CcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccc--eEEEecCC-----------------------
Confidence 999874 222222 26888999999999999998766 33332211
Q ss_pred ccHHHHHHHHHHHHHccCcE------EEE----eccccccCC---CCccHHHHHHHH--hccCCCc--eEEecCC---ch
Q 022982 182 EDVDLLIRRAERCLEAGADM------IMI----DSDDVCKHA---DSLRADIIAKVI--GRLGLEK--TMFEATN---PR 241 (289)
Q Consensus 182 ~~~~~~I~~~~~dLeAGA~~------Vii----EarGI~d~~---G~~r~d~v~~ii--~~l~~ek--lifEAP~---k~ 241 (289)
+.+++++.+..--+.+.++ |-+ ++-.+++.. ..+..+..-+++ .++=+.+ +-.-|+. ..
T Consensus 206 -t~ed~~~~l~~lr~l~~~~~~~~~~iP~~f~~~gT~l~~~~~~~~~~~~~~~lr~iAv~Rl~lp~~~~~i~a~~~~l~~ 284 (343)
T TIGR03551 206 -TPEHWVDHLLILREIQEETGGFTEFVPLPFVHYNAPLYLKGMARPGPTGREDLKVHAIARILLHGLIDNIQASWVKLGK 284 (343)
T ss_pred -CHHHHHHHHHHHHHhhHHhCCeeEEEeccccCCCCccccccCCCCCCCHHHHHHHHHHHHHhCCCcccCeeccccccCH
Confidence 3555666665555555543 221 244566531 223343333333 4444333 2466663 22
Q ss_pred hHHHHHHHhCCCcccc-cCCCCch
Q 022982 242 TSEWFIRRYGPKVNLF-VDHSQVM 264 (289)
Q Consensus 242 qQ~~~I~~fG~~VNLg-I~~~eVl 264 (289)
.+..+...+|.|.==| +-+++|.
T Consensus 285 ~~~~~~l~~Gan~~~g~~~~e~v~ 308 (343)
T TIGR03551 285 KLAQVALRCGANDLGGTLMEESIS 308 (343)
T ss_pred HHHHHHHhCCCccCCccceecccc
Confidence 2335556778776445 5555554
No 61
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=94.87 E-value=0.31 Score=47.99 Aligned_cols=123 Identities=14% Similarity=0.328 Sum_probs=88.0
Q ss_pred ccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc----
Q 022982 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE---- 126 (289)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~---- 126 (289)
..|+-+=||+||-.+.+.+.|++.++.++++. .+.+. .|+.+.-+|+.+ +++++.++++|++.|.|.--|.+
T Consensus 61 ~~i~tiy~GGGTPs~l~~~~l~~ll~~i~~~~-~~~~~--~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~L 137 (390)
T PRK06582 61 KYIKSIFFGGGTPSLMNPVIVEGIINKISNLA-IIDNQ--TEITLETNPTSFETEKFKAFKLAGINRVSIGVQSLKEDDL 137 (390)
T ss_pred CceeEEEECCCccccCCHHHHHHHHHHHHHhC-CCCCC--CEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcCCHHHH
Confidence 46999999999999999999999999999863 11111 244555567666 79999999999999988766652
Q ss_pred ------CChhHHHHHHHHHHHcCCcccceeee--ecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHcc
Q 022982 127 ------IPEETLLRYVRLVKSAGLKAKPKFAV--MFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG 198 (289)
Q Consensus 127 ------i~~~~r~~lI~~~~~~G~~v~~E~g~--k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAG 198 (289)
-+.++-.+.++.+++.+. .+.+ ..+. |. +|.+.+.+.++..++.+
T Consensus 138 ~~lgR~h~~~~~~~ai~~~~~~~~----~v~~DlI~Gl----------------Pg-------qt~e~~~~~l~~~~~l~ 190 (390)
T PRK06582 138 KKLGRTHDCMQAIKTIEAANTIFP----RVSFDLIYAR----------------SG-------QTLKDWQEELKQAMQLA 190 (390)
T ss_pred HHcCCCCCHHHHHHHHHHHHHhCC----cEEEEeecCC----------------CC-------CCHHHHHHHHHHHHhcC
Confidence 345566677888877522 2333 2211 11 14778889999999999
Q ss_pred CcEEEE
Q 022982 199 ADMIMI 204 (289)
Q Consensus 199 A~~Vii 204 (289)
.++|-+
T Consensus 191 p~his~ 196 (390)
T PRK06582 191 TSHISL 196 (390)
T ss_pred CCEEEE
Confidence 987744
No 62
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=94.84 E-value=0.54 Score=44.20 Aligned_cols=156 Identities=18% Similarity=0.173 Sum_probs=106.3
Q ss_pred hhHHHHHHHhhcccccEEEecCccccccCh-----------hHHHHHHHHHHhCCceec------CCcHHHHHHHhCCch
Q 022982 40 HNVLEDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVS------TGDWAEHLIRNGPSA 102 (289)
Q Consensus 40 ~~~~~DlLe~ag~yID~lKfg~GTs~l~p~-----------~~l~eKI~l~~~~gV~v~------~GtlfE~a~~qg~~~ 102 (289)
.+.++..+++- +|.+.+...+|-.+.+ +.+++.++.++++|..+. .|..++--. .++.
T Consensus 76 ~~dv~~A~~~g---~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~--~~~~ 150 (274)
T cd07938 76 LRGAERALAAG---VDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEV--PPER 150 (274)
T ss_pred HHHHHHHHHcC---cCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCC--CHHH
Confidence 34555556543 6777777766643222 456677999999999873 232222111 3347
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 022982 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (289)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 182 (289)
+.++.+.+.++|.+.|-+.|-.-.+.+.+-.++|+.+++. +. ..++++.. ..
T Consensus 151 ~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~-~~~i~~H~-Hn------------------------- 202 (274)
T cd07938 151 VAEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLER-FP-DEKLALHF-HD------------------------- 202 (274)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHHHH-CC-CCeEEEEE-CC-------------------------
Confidence 7888889999999999999999999999999999999985 21 12345532 11
Q ss_pred cHHHHHHHHHHHHHccCcEEEEecc--ccc------cCCCCccHHHHHHHHhccCC
Q 022982 183 DVDLLIRRAERCLEAGADMIMIDSD--DVC------KHADSLRADIIAKVIGRLGL 230 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAGA~~ViiEar--GI~------d~~G~~r~d~v~~ii~~l~~ 230 (289)
|...-+-.+...++|||++ +++- ||= +..||..++.+-..++..+.
T Consensus 203 d~GlA~AN~laA~~aGa~~--id~t~~GlGgcpfa~eraGN~~~E~lv~~L~~~g~ 256 (274)
T cd07938 203 TRGQALANILAALEAGVRR--FDSSVGGLGGCPFAPGATGNVATEDLVYMLEGMGI 256 (274)
T ss_pred CCChHHHHHHHHHHhCCCE--EEEeccccCCCCCCCCccCCcCHHHHHHHHHhcCC
Confidence 2233467788899999995 5664 654 56899998877766665443
No 63
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=94.82 E-value=0.89 Score=44.08 Aligned_cols=141 Identities=16% Similarity=0.249 Sum_probs=94.5
Q ss_pred HHHHHHHhhcccccEEEecC-----------ccccccChhHHHHHHHHHHhCCce--ecCCcHHHHHHHhCCchHHHHHH
Q 022982 42 VLEDIFESMGQFVDGLKFSG-----------GSHSLMPKPFIEEVVKRAHQHDVY--VSTGDWAEHLIRNGPSAFKEYVE 108 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~-----------GTs~l~p~~~l~eKI~l~~~~gV~--v~~GtlfE~a~~qg~~~~~~yl~ 108 (289)
.+-..|+.+| ||.+=+|. |.....+.+.+++-.+..+..-+- .-|| .+ .. +-++
T Consensus 28 ~ia~~Ld~aG--V~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg--------~~--~~-~dl~ 94 (333)
T TIGR03217 28 AIAAALDEAG--VDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPG--------IG--TV-HDLK 94 (333)
T ss_pred HHHHHHHHcC--CCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccC--------cc--CH-HHHH
Confidence 4445566677 77777752 344445556666666554432221 1133 11 23 4578
Q ss_pred HHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHH
Q 022982 109 DCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 188 (289)
Q Consensus 109 ~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I 188 (289)
.+.+.|.+.|-|....-+.+ .-.+.|+.+++.|++|.. ...... ..+++.++
T Consensus 95 ~a~~~gvd~iri~~~~~e~d--~~~~~i~~ak~~G~~v~~--~l~~s~------------------------~~~~e~l~ 146 (333)
T TIGR03217 95 AAYDAGARTVRVATHCTEAD--VSEQHIGMARELGMDTVG--FLMMSH------------------------MTPPEKLA 146 (333)
T ss_pred HHHHCCCCEEEEEeccchHH--HHHHHHHHHHHcCCeEEE--EEEccc------------------------CCCHHHHH
Confidence 89999999999987655543 346899999999987542 332100 11589999
Q ss_pred HHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 189 RRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 189 ~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
++++.-.++||+.| .|.|..|...++.+.+++..+
T Consensus 147 ~~a~~~~~~Ga~~i-----~i~DT~G~~~P~~v~~~v~~l 181 (333)
T TIGR03217 147 EQAKLMESYGADCV-----YIVDSAGAMLPDDVRDRVRAL 181 (333)
T ss_pred HHHHHHHhcCCCEE-----EEccCCCCCCHHHHHHHHHHH
Confidence 99999999999976 478999999999988888644
No 64
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=94.82 E-value=0.62 Score=42.36 Aligned_cols=145 Identities=14% Similarity=0.178 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc-----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCC-CccccccccccccCC
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSL-----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIP-SDRDRAFGAYVARAP 175 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti-----~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg-~~~d~~~~~~~~~~~ 175 (289)
.+.+-++.++++||+.||+..+.. +++..+..++-+.+++.|+++.+ ++.-...-... ...|+. .
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s-~~~~~~~~~~~~~~~~~~--------~ 84 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIG-YTPETNGYPYNMMLGDEH--------M 84 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEE-ecCcccCcCccccCCCHH--------H
Confidence 689999999999999999965421 34455677788888999998754 22100000000 000100 0
Q ss_pred CCccccccHHHHHHHHHHHHHccCcEEEEecc--ccccCCCCcc------HHHHHHHHhccCCCceEEec--C-------
Q 022982 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLR------ADIIAKVIGRLGLEKTMFEA--T------- 238 (289)
Q Consensus 176 ~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar--GI~d~~G~~r------~d~v~~ii~~l~~eklifEA--P------- 238 (289)
.....+.+.+.++.+-..||..|++-+- +........+ -..+.+++++.|+ +|.+|- |
T Consensus 85 ----r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv-~l~iE~~~~~~~~~~~ 159 (275)
T PRK09856 85 ----RRESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGM-DLILEPLTPYESNVVC 159 (275)
T ss_pred ----HHHHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-EEEEecCCCCcccccC
Confidence 0112455566667777899999988652 1111111111 1233444455565 577885 2
Q ss_pred CchhHHHHHHHhC-CCcccccCC
Q 022982 239 NPRTSEWFIRRYG-PKVNLFVDH 260 (289)
Q Consensus 239 ~k~qQ~~~I~~fG-~~VNLgI~~ 260 (289)
.+..-..+++..+ |+|-+.+++
T Consensus 160 t~~~~~~l~~~~~~~~v~~~~D~ 182 (275)
T PRK09856 160 NANDVLHALALVPSPRLFSMVDI 182 (275)
T ss_pred CHHHHHHHHHHcCCCcceeEEee
Confidence 3567888999998 566443443
No 65
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=94.81 E-value=0.69 Score=44.09 Aligned_cols=102 Identities=23% Similarity=0.264 Sum_probs=69.6
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCc--------------ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccc
Q 022982 100 PSAFKEYVEDCKQVGFDTIELNVGS--------------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDR 165 (289)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGt--------------i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~ 165 (289)
+..+.+.++++.+.|...|=|-|.+ --+|.+++++.|+.+++. +.-++|-+ .. .-|.
T Consensus 91 ~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a--~~~~~~~I---iA----RTDa 161 (285)
T TIGR02320 91 FEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDA--QTTEDFMI---IA----RVES 161 (285)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHh--ccCCCeEE---EE----eccc
Confidence 3366777888888999999996643 357999999999999885 11233433 11 1111
Q ss_pred ccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccC
Q 022982 166 AFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (289)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~ 229 (289)
. +.. ...++.|+++++..+||||.|++++ +....+.+.++.+.++
T Consensus 162 ----~-----~~~---~~~~eAi~Ra~ay~eAGAD~ifv~~-------~~~~~~ei~~~~~~~~ 206 (285)
T TIGR02320 162 ----L-----ILG---KGMEDALKRAEAYAEAGADGIMIHS-------RKKDPDEILEFARRFR 206 (285)
T ss_pred ----c-----ccc---CCHHHHHHHHHHHHHcCCCEEEecC-------CCCCHHHHHHHHHHhh
Confidence 0 101 1378999999999999999999994 1234566777776664
No 66
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=94.81 E-value=0.78 Score=44.74 Aligned_cols=144 Identities=23% Similarity=0.316 Sum_probs=96.1
Q ss_pred hHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 022982 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (289)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEI 120 (289)
..+-+.|..+| ||.+=.||= ..+++ -.+.++.+.+.+.....-+|. + ...+-++.+.+.|.+.|.|
T Consensus 25 ~~ia~~L~~~G--v~~IEvG~p---~~~~~-~~e~i~~i~~~~~~~~v~~~~-----r---~~~~di~~a~~~g~~~i~i 90 (363)
T TIGR02090 25 VEIARKLDELG--VDVIEAGFP---IASEG-EFEAIKKISQEGLNAEICSLA-----R---ALKKDIDKAIDCGVDSIHT 90 (363)
T ss_pred HHHHHHHHHcC--CCEEEEeCC---CCChH-HHHHHHHHHhcCCCcEEEEEc-----c---cCHHHHHHHHHcCcCEEEE
Confidence 35566777888 888888763 33433 245555555544322222333 2 1244578889999999999
Q ss_pred cCCcccC--------Ch----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHH
Q 022982 121 NVGSLEI--------PE----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 188 (289)
Q Consensus 121 SdGti~i--------~~----~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I 188 (289)
+..+-++ +. +.-.+.|+.+++.|++| +++..+.. ..|++.++
T Consensus 91 ~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v--~~~~eda~------------------------r~~~~~l~ 144 (363)
T TIGR02090 91 FIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIV--EFSAEDAT------------------------RTDIDFLI 144 (363)
T ss_pred EEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEE--EEEEeecC------------------------CCCHHHHH
Confidence 7765333 33 44457889999999875 45553210 01588899
Q ss_pred HHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccC
Q 022982 189 RRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (289)
Q Consensus 189 ~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~ 229 (289)
+.+++..++||+.|. |+|..|...++.+.++++.+-
T Consensus 145 ~~~~~~~~~g~~~i~-----l~DT~G~~~P~~v~~li~~l~ 180 (363)
T TIGR02090 145 KVFKRAEEAGADRIN-----IADTVGVLTPQKMEELIKKLK 180 (363)
T ss_pred HHHHHHHhCCCCEEE-----EeCCCCccCHHHHHHHHHHHh
Confidence 999999999998764 688889999888888887653
No 67
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=94.64 E-value=0.69 Score=41.73 Aligned_cols=148 Identities=17% Similarity=0.156 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 181 (289)
.+++.++.++++||+.||+..-. ..+..++-+.+++.|+++.. ++. +..... ..++. ....|..- .
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~----~~~~~~l~~~l~~~gl~v~~-~~~--~~~~~~-~~~~~--~~~~~~~~----~ 80 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY----DWDAEALKARLAAAGLEQVL-FNL--PAGDWA-AGERG--IACLPGRE----E 80 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc----cCCHHHHHHHHHHcCCeEEE-EeC--CCCccc-cCCCc--cccCCccH----H
Confidence 79999999999999999996521 23566777788899999754 221 110000 00000 00000000 0
Q ss_pred ccHHHHHHHHHHHHHccCcEEEEeccccccCC--CCccH---HHHHHH---HhccCCCceEEec-----------CCchh
Q 022982 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHA--DSLRA---DIIAKV---IGRLGLEKTMFEA-----------TNPRT 242 (289)
Q Consensus 182 ~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~--G~~r~---d~v~~i---i~~l~~eklifEA-----------P~k~q 242 (289)
+..+.+-+.++..-+.||..|.+.+-...++. .+... +.+.++ +++.|+ ++.+|. ....+
T Consensus 81 ~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi-~l~lE~~~~~~~~~~~l~t~~~ 159 (254)
T TIGR03234 81 EFREGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGL-TLLIEPINSFDMPGFFLTTTEQ 159 (254)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC-EEEEEECCcccCCCChhcCHHH
Confidence 00122223444455779999887653221110 01111 223333 344443 377784 24566
Q ss_pred HHHHHHHhC-CCcccccCCCCch
Q 022982 243 SEWFIRRYG-PKVNLFVDHSQVM 264 (289)
Q Consensus 243 Q~~~I~~fG-~~VNLgI~~~eVl 264 (289)
-..+|+..+ |||.+-.|+.+..
T Consensus 160 ~~~li~~v~~~~~~i~~D~~h~~ 182 (254)
T TIGR03234 160 ALAVIDDVGRENLKLQYDLYHMQ 182 (254)
T ss_pred HHHHHHHhCCCCEeEeeehhhhh
Confidence 678899988 6666656666544
No 68
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=94.64 E-value=0.4 Score=44.44 Aligned_cols=80 Identities=8% Similarity=0.073 Sum_probs=51.8
Q ss_pred hhHHHHHHHhhccc-ccEEEecCcccc-------ccChhHHHHHHHHHHhC-CceecC--CcHHHHHHHhCCchHHHHHH
Q 022982 40 HNVLEDIFESMGQF-VDGLKFSGGSHS-------LMPKPFIEEVVKRAHQH-DVYVST--GDWAEHLIRNGPSAFKEYVE 108 (289)
Q Consensus 40 ~~~~~DlLe~ag~y-ID~lKfg~GTs~-------l~p~~~l~eKI~l~~~~-gV~v~~--GtlfE~a~~qg~~~~~~yl~ 108 (289)
+..+.+..+.+-++ +|.+=+-++|-. +...+.+.+.++-.++. ++++.- ++.. ..+.+.+..+
T Consensus 110 ~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~------~~~~~~~~a~ 183 (289)
T cd02810 110 KEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF------DLEDIVELAK 183 (289)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCC------CHHHHHHHHH
Confidence 34555555566666 788877766543 33456778888888776 444332 2111 1125777888
Q ss_pred HHHHcCCCEEEecCCcc
Q 022982 109 DCKQVGFDTIELNVGSL 125 (289)
Q Consensus 109 ~~k~lGF~~IEISdGti 125 (289)
.+.+.|.|.|.+++++.
T Consensus 184 ~l~~~Gad~i~~~~~~~ 200 (289)
T cd02810 184 AAERAGADGLTAINTIS 200 (289)
T ss_pred HHHHcCCCEEEEEcccC
Confidence 89999999999998764
No 69
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=94.61 E-value=0.46 Score=45.31 Aligned_cols=130 Identities=18% Similarity=0.298 Sum_probs=88.2
Q ss_pred chhHHHHHHHhhcc-cccEEEecCccccccChhHHHHHHHHHHhCC-c---eecC-CcHHHHHHHhCCchHHHHHHHHHH
Q 022982 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-V---YVST-GDWAEHLIRNGPSAFKEYVEDCKQ 112 (289)
Q Consensus 39 g~~~~~DlLe~ag~-yID~lKfg~GTs~l~p~~~l~eKI~l~~~~g-V---~v~~-GtlfE~a~~qg~~~~~~yl~~~k~ 112 (289)
...++..+++.+.+ -+..+.|.+|.-.+.+ .+.+.++.+++++ + .+.+ |+++ .++.+.+++
T Consensus 46 s~eei~~li~~~~~~Gv~~I~~tGGEPllr~--dl~~li~~i~~~~~l~~i~itTNG~ll-----------~~~~~~L~~ 112 (329)
T PRK13361 46 SLEELAWLAQAFTELGVRKIRLTGGEPLVRR--GCDQLVARLGKLPGLEELSLTTNGSRL-----------ARFAAELAD 112 (329)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECcCCCccc--cHHHHHHHHHhCCCCceEEEEeChhHH-----------HHHHHHHHH
Confidence 45577777665433 3788999999988776 5889999888875 2 2334 5443 345677889
Q ss_pred cCCCEEEecCCccc----------CChhHHHHHHHHHHHcCC-cccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 022982 113 VGFDTIELNVGSLE----------IPEETLLRYVRLVKSAGL-KAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (289)
Q Consensus 113 lGF~~IEISdGti~----------i~~~~r~~lI~~~~~~G~-~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 181 (289)
.|++.|-||=.+++ -+.+.-.+.|+.+++.|+ .++-.+-+..+
T Consensus 113 aGl~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g-------------------------- 166 (329)
T PRK13361 113 AGLKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRG-------------------------- 166 (329)
T ss_pred cCCCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECC--------------------------
Confidence 99999999987763 234567788889999888 44433322110
Q ss_pred ccHHHHHHHHHHHHHccCcEEEEecc
Q 022982 182 EDVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 182 ~~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
.+.+++.+.++-..+-|+++..+|--
T Consensus 167 ~N~~ei~~~~~~~~~~gi~~~~ie~m 192 (329)
T PRK13361 167 QNDDEVLDLVEFCRERGLDIAFIEEM 192 (329)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEEecc
Confidence 02445555566666789999999864
No 70
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=94.60 E-value=0.52 Score=49.14 Aligned_cols=157 Identities=11% Similarity=0.142 Sum_probs=107.3
Q ss_pred HHHHHHHhhccc-ccEEEecCccccccChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEE
Q 022982 42 VLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIE 119 (289)
Q Consensus 42 ~~~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~IE 119 (289)
-.+..++.|.+. ||.+-+....+-+ +.+++-|+.+|++|..+... .+.- +=...++.+-++.+.+.+.|.+.|-
T Consensus 92 vv~~~v~~a~~~Gvd~irif~~lnd~---~n~~~~i~~ak~~G~~v~~~i~~t~-~p~~~~~~~~~~~~~~~~~Gad~I~ 167 (582)
T TIGR01108 92 VVERFVKKAVENGMDVFRIFDALNDP---RNLQAAIQAAKKHGAHAQGTISYTT-SPVHTLETYLDLAEELLEMGVDSIC 167 (582)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecCcH---HHHHHHHHHHHHcCCEEEEEEEecc-CCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 355556655444 9998888655443 57999999999999876643 1100 1012234666777778889999999
Q ss_pred ecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccC
Q 022982 120 LNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 199 (289)
Q Consensus 120 ISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA 199 (289)
|.|-.--+.+.+-.++|+.+++. +. . .++..+ ..+ ...-+-..-..++|||
T Consensus 168 i~Dt~G~~~P~~v~~lv~~lk~~-~~-~-pi~~H~-Hnt-------------------------~Gla~An~laAveaGa 218 (582)
T TIGR01108 168 IKDMAGILTPKAAYELVSALKKR-FG-L-PVHLHS-HAT-------------------------TGMAEMALLKAIEAGA 218 (582)
T ss_pred ECCCCCCcCHHHHHHHHHHHHHh-CC-C-ceEEEe-cCC-------------------------CCcHHHHHHHHHHhCC
Confidence 99999999999999999999884 11 1 244432 111 2223566777899999
Q ss_pred cEEEEeccccccCCCCccHHHHHHHHhccCCC
Q 022982 200 DMIMIDSDDVCKHADSLRADIIAKVIGRLGLE 231 (289)
Q Consensus 200 ~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~e 231 (289)
+.|=.=-.|+=...||...+.+-..++..+.+
T Consensus 219 ~~vd~ai~GlG~~tGn~~le~vv~~L~~~g~~ 250 (582)
T TIGR01108 219 DGIDTAISSMSGGTSHPPTETMVAALRGTGYD 250 (582)
T ss_pred CEEEeccccccccccChhHHHHHHHHHhcCCC
Confidence 96544335888899998888776666655543
No 71
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=94.58 E-value=0.97 Score=40.43 Aligned_cols=113 Identities=16% Similarity=0.180 Sum_probs=70.2
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCCh-hHHHHHHHHHHH-cCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 022982 104 KEYVEDCKQVGFDTIELNVGSLEIPE-ETLLRYVRLVKS-AGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (289)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~-~~r~~lI~~~~~-~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 181 (289)
.++++.|++.|-|.|-+......-|. ++..++++.+++ .|+.+.+++.
T Consensus 78 ~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v~------------------------------ 127 (221)
T PRK01130 78 LKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMADCS------------------------------ 127 (221)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeCC------------------------------
Confidence 46789999999999988654443332 566789999998 6666443221
Q ss_pred ccHHHHHHHHHHHHHccCcEEEEeccccccCC---CCccHHHHHHHHhccCCCceEEecCCc-hhHHHHHHHhCC
Q 022982 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHA---DSLRADIIAKVIGRLGLEKTMFEATNP-RTSEWFIRRYGP 252 (289)
Q Consensus 182 ~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~---G~~r~d~v~~ii~~l~~eklifEAP~k-~qQ~~~I~~fG~ 252 (289)
+ .+++++..++|+++|.+..+|..... .....+.+.++.+.++ -.++-+---+ ..+..-+...|.
T Consensus 128 -t----~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~-iPvia~GGI~t~~~~~~~l~~Ga 196 (221)
T PRK01130 128 -T----LEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVG-CPVIAEGRINTPEQAKKALELGA 196 (221)
T ss_pred -C----HHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCC-CCEEEECCCCCHHHHHHHHHCCC
Confidence 1 23456788999999999877765432 2234566777766553 2344444432 334444445553
No 72
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=94.48 E-value=0.86 Score=43.50 Aligned_cols=126 Identities=18% Similarity=0.235 Sum_probs=80.3
Q ss_pred chhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCc--eecC-CcHHHHHHHhCCchHHHHHHHHHHcCC
Q 022982 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV--YVST-GDWAEHLIRNGPSAFKEYVEDCKQVGF 115 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV--~v~~-GtlfE~a~~qg~~~~~~yl~~~k~lGF 115 (289)
.+....+.++..|. -.+-|.+|=-.+.| .+.+.++.+++.|+ .+.| |++++- .+ +..++.|.
T Consensus 60 s~ee~~~~i~e~g~--~~V~i~GGEPLL~p--dl~eiv~~~~~~g~~v~l~TNG~ll~~-------~~----~~l~~~~~ 124 (318)
T TIGR03470 60 SVEECLRAVDECGA--PVVSIPGGEPLLHP--EIDEIVRGLVARKKFVYLCTNALLLEK-------KL----DKFEPSPY 124 (318)
T ss_pred CHHHHHHHHHHcCC--CEEEEeCccccccc--cHHHHHHHHHHcCCeEEEecCceehHH-------HH----HHHHhCCC
Confidence 34455555555553 35778889888877 58999999999986 4446 776542 22 23466788
Q ss_pred CEEEec-CCcccCC---------hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHH
Q 022982 116 DTIELN-VGSLEIP---------EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVD 185 (289)
Q Consensus 116 ~~IEIS-dGti~i~---------~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~ 185 (289)
..|-|| ||.-+.- .+.-.+.|+.++++|+.|...+.+-. .. +++
T Consensus 125 ~~i~VSLDG~~e~hd~~~~~~g~f~~~l~~I~~l~~~G~~v~v~~tv~~-------~~-------------------n~~ 178 (318)
T TIGR03470 125 LTFSVHLDGLREHHDASVCREGVFDRAVEAIREAKARGFRVTTNTTLFN-------DT-------------------DPE 178 (318)
T ss_pred cEEEEEEecCchhhchhhcCCCcHHHHHHHHHHHHHCCCcEEEEEEEeC-------CC-------------------CHH
Confidence 889998 6643221 23345789999999987655544411 00 244
Q ss_pred HHHHHHHHHHHccCcEEEEe
Q 022982 186 LLIRRAERCLEAGADMIMID 205 (289)
Q Consensus 186 ~~I~~~~~dLeAGA~~ViiE 205 (289)
++.+.++..-+.|++.|.+-
T Consensus 179 ei~~~~~~~~~lGv~~i~i~ 198 (318)
T TIGR03470 179 EVAEFFDYLTDLGVDGMTIS 198 (318)
T ss_pred HHHHHHHHHHHcCCCEEEEe
Confidence 45555555567899888773
No 73
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=94.46 E-value=0.69 Score=43.10 Aligned_cols=130 Identities=21% Similarity=0.312 Sum_probs=88.1
Q ss_pred chhHHHHHHHhhccc-ccEEEecCccccccChhHHHHHHHHHHhCCc-e--ecC-CcHHHHHHHhCCchHHHHHHHHHHc
Q 022982 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-Y--VST-GDWAEHLIRNGPSAFKEYVEDCKQV 113 (289)
Q Consensus 39 g~~~~~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV-~--v~~-GtlfE~a~~qg~~~~~~yl~~~k~l 113 (289)
...++..+++.+.++ +..+.|.+|--.+.+ .+.+.++.++++|+ . +.+ |+++ +++++.+++.
T Consensus 41 s~eei~~~i~~~~~~gi~~I~~tGGEPll~~--~l~~iv~~l~~~g~~~v~i~TNG~ll-----------~~~~~~l~~~ 107 (302)
T TIGR02668 41 SPEEIERIVRVASEFGVRKVKITGGEPLLRK--DLIEIIRRIKDYGIKDVSMTTNGILL-----------EKLAKKLKEA 107 (302)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECccccccc--CHHHHHHHHHhCCCceEEEEcCchHH-----------HHHHHHHHHC
Confidence 566788888766554 788999999987766 47789999999976 3 344 5543 3456667889
Q ss_pred CCCEEEecCCccc----------CChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 022982 114 GFDTIELNVGSLE----------IPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (289)
Q Consensus 114 GF~~IEISdGti~----------i~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 182 (289)
|++.|-||=.+.+ -+.+...+.|+.+++.|+. ++-.+-+..+ .
T Consensus 108 g~~~v~iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~v~~~g-------~------------------- 161 (302)
T TIGR02668 108 GLDRVNVSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLNMVVLKG-------I------------------- 161 (302)
T ss_pred CCCEEEEEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEEEEEeCC-------C-------------------
Confidence 9999999876652 2456678899999999986 4443333110 0
Q ss_pred cHHHHHHHHHHHHHccCcEEEEecc
Q 022982 183 DVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
+.+++.+.++-..+.|++.-.+|--
T Consensus 162 n~~ei~~~~~~~~~~g~~~~~ie~~ 186 (302)
T TIGR02668 162 NDNEIPDMVEFAAEGGAILQLIELM 186 (302)
T ss_pred CHHHHHHHHHHHHhcCCEEEEEEEe
Confidence 1334444444445689987777754
No 74
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=94.45 E-value=1.4 Score=40.96 Aligned_cols=146 Identities=16% Similarity=0.201 Sum_probs=102.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCC
Q 022982 102 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 177 (289)
.++++++++-+.|.+.+=+... +..|+.++|.++++.+.+. +=++.-=+|+-
T Consensus 23 ~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~------------------------ 78 (289)
T PF00701_consen 23 ALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVG------------------------ 78 (289)
T ss_dssp HHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEE------------------------
T ss_pred HHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCc------------------------
Confidence 6888999999999999988654 4689999999999998873 11111112331
Q ss_pred ccccccHHHHHHHHHHHHHccCcEEEEecc-------------------------ccccCC----CCccHHHHHHHHhcc
Q 022982 178 TEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKHA----DSLRADIIAKVIGRL 228 (289)
Q Consensus 178 ~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-------------------------GI~d~~----G~~r~d~v~~ii~~l 228 (289)
..+.++.|++++..-++||+.|++=.- -||+.- -++..+.+.++.+ +
T Consensus 79 ---~~st~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~-~ 154 (289)
T PF00701_consen 79 ---ANSTEEAIELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADATDLPIIIYNNPARTGNDLSPETLARLAK-I 154 (289)
T ss_dssp ---SSSHHHHHHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTSHHHHHHHHHT-S
T ss_pred ---chhHHHHHHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHhhcCCCEEEEECCCccccCCCHHHHHHHhc-C
Confidence 014788899999999999999998751 267663 4777888888887 5
Q ss_pred C-CCceEEecCCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCCC
Q 022982 229 G-LEKTMFEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLGK 276 (289)
Q Consensus 229 ~-~eklifEAP~k~qQ~~~I~~fG~~VNLgI~~~eVl~LE~LR~g~~G~ 276 (289)
+ +-=+=....+..+...++++.++++.+... +|-.-+.+|..|.-|-
T Consensus 155 ~nv~giK~s~~~~~~~~~~~~~~~~~~~v~~G-~d~~~~~~l~~G~~G~ 202 (289)
T PF00701_consen 155 PNVVGIKDSSGDLERLIQLLRAVGPDFSVFCG-DDELLLPALAAGADGF 202 (289)
T ss_dssp TTEEEEEESSSBHHHHHHHHHHSSTTSEEEES-SGGGHHHHHHTTSSEE
T ss_pred CcEEEEEcCchhHHHHHHHhhhcccCeeeecc-ccccccccccccCCEE
Confidence 5 222223445555677788888999888666 4444579998887665
No 75
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=94.45 E-value=2.3 Score=35.57 Aligned_cols=120 Identities=22% Similarity=0.261 Sum_probs=80.8
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhCC-----ceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc---
Q 022982 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-----VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL--- 125 (289)
Q Consensus 54 ID~lKfg~GTs~l~p~~~l~eKI~l~~~~g-----V~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti--- 125 (289)
++.+-|+.|+..+.+.+.+.+.++.++++. ..+...| .+...-++.++.+++.|++.|-+|=-+.
T Consensus 52 ~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t-------n~~~~~~~~~~~l~~~~~~~i~isl~~~~~~ 124 (216)
T smart00729 52 VGTVFIGGGTPTLLSPEQLEELLEAIREILGLADDVEITIET-------RPGTLTEELLEALKEAGVNRVSLGVQSGSDE 124 (216)
T ss_pred eeEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEe-------CcccCCHHHHHHHHHcCCCeEEEecccCCHH
Confidence 588999999999999877888888888874 2222211 1111236788999999999998876653
Q ss_pred -------cCChhHHHHHHHHHHHcC-CcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHc
Q 022982 126 -------EIPEETLLRYVRLVKSAG-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEA 197 (289)
Q Consensus 126 -------~i~~~~r~~lI~~~~~~G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeA 197 (289)
.-+.+...+.|+.+++.| +.|..-+-+ +. .. .+.+++.+.++...+.
T Consensus 125 ~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~~--g~-----~~------------------~~~~~~~~~~~~~~~~ 179 (216)
T smart00729 125 VLKAINRGHTVEDVLEAVEKLREAGPIKVSTDLIV--GL-----PG------------------ETEEDFEETLKLLKEL 179 (216)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHhCCcceEEeEEe--cC-----CC------------------CCHHHHHHHHHHHHHc
Confidence 345688899999999999 444333322 11 00 1255666666666788
Q ss_pred cCcEEEEe
Q 022982 198 GADMIMID 205 (289)
Q Consensus 198 GA~~ViiE 205 (289)
|++.|.+-
T Consensus 180 ~~~~i~~~ 187 (216)
T smart00729 180 GPDRVSIF 187 (216)
T ss_pred CCCeEEee
Confidence 99866543
No 76
>PRK00915 2-isopropylmalate synthase; Validated
Probab=94.45 E-value=0.55 Score=47.99 Aligned_cols=146 Identities=18% Similarity=0.195 Sum_probs=97.7
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (289)
.+-..|..+| ||.+=+||..+.=.+.+.+++..+.. .+..++. |. .-.+..++.-++..++.|.+.|-+.
T Consensus 30 ~ia~~L~~~G--v~~IE~G~p~~s~~d~~~v~~i~~~~--~~~~i~a--~~----r~~~~did~a~~a~~~~~~~~v~i~ 99 (513)
T PRK00915 30 QIAKQLERLG--VDVIEAGFPASSPGDFEAVKRIARTV--KNSTVCG--LA----RAVKKDIDAAAEALKPAEAPRIHTF 99 (513)
T ss_pred HHHHHHHHcC--CCEEEEcCCCCChHHHHHHHHHHhhC--CCCEEEE--Ec----cCCHHHHHHHHHHhhcCCCCEEEEE
Confidence 5566778888 99999998654333444454443322 2344432 11 0112257777777778999999998
Q ss_pred CCcccCCh--------hH----HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHH
Q 022982 122 VGSLEIPE--------ET----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (289)
Q Consensus 122 dGti~i~~--------~~----r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~ 189 (289)
..+-++-. ++ -.+.|+.+++.|++| +|+..+.. -.|++.+++
T Consensus 100 ~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v--~f~~ed~~------------------------r~d~~~l~~ 153 (513)
T PRK00915 100 IATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDV--EFSAEDAT------------------------RTDLDFLCR 153 (513)
T ss_pred ECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeE--EEEeCCCC------------------------CCCHHHHHH
Confidence 87754432 22 247899999999886 45553210 015888999
Q ss_pred HHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 190 RAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 190 ~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
.++...++||+.| .|+|..|-..+..+.++++.+
T Consensus 154 ~~~~~~~~Ga~~i-----~l~DTvG~~~P~~~~~~i~~l 187 (513)
T PRK00915 154 VVEAAIDAGATTI-----NIPDTVGYTTPEEFGELIKTL 187 (513)
T ss_pred HHHHHHHcCCCEE-----EEccCCCCCCHHHHHHHHHHH
Confidence 9999999999865 478999999999888888654
No 77
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=94.33 E-value=0.96 Score=42.18 Aligned_cols=111 Identities=18% Similarity=0.213 Sum_probs=86.5
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHH
Q 022982 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (289)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (289)
++.++..|-|+|=+.... ++.++..++++.+++.|+.+.-|+.-
T Consensus 126 i~~a~~~GAD~VlLi~~~--l~~~~l~~li~~a~~lGl~~lvevh~---------------------------------- 169 (260)
T PRK00278 126 IYEARAAGADAILLIVAA--LDDEQLKELLDYAHSLGLDVLVEVHD---------------------------------- 169 (260)
T ss_pred HHHHHHcCCCEEEEEecc--CCHHHHHHHHHHHHHcCCeEEEEeCC----------------------------------
Confidence 778999999999998877 46788999999999999887777654
Q ss_pred HHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCC-ceEEecCC-chhHHHHHHHhCCCccc
Q 022982 187 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE-KTMFEATN-PRTSEWFIRRYGPKVNL 256 (289)
Q Consensus 187 ~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~e-klifEAP~-k~qQ~~~I~~fG~~VNL 256 (289)
.+++++.+++||+.|-+-.|.+-. -....+...+++..++-+ .+|-|+=- ...+...+...|.+.=|
T Consensus 170 -~~E~~~A~~~gadiIgin~rdl~~--~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vl 238 (260)
T PRK00278 170 -EEELERALKLGAPLIGINNRNLKT--FEVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVL 238 (260)
T ss_pred -HHHHHHHHHcCCCEEEECCCCccc--ccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEE
Confidence 244566779999999987775422 234477888888877644 67889875 47788888888988766
No 78
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=94.30 E-value=0.24 Score=46.81 Aligned_cols=86 Identities=19% Similarity=0.283 Sum_probs=61.4
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccc
Q 022982 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (289)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~ 183 (289)
..-.+..++.|.++|-|-|| ++..+.|+.+.++|.-|.-.+|..-. + +..++.+....+- ...
T Consensus 97 ~~a~r~~~~aGa~aVkiEdg------~~~~~~I~al~~agIpV~gHiGL~pq-~------~~~~gg~~i~grt----~~~ 159 (264)
T PRK00311 97 RNAGRLMKEAGAHAVKLEGG------EEVAETIKRLVERGIPVMGHLGLTPQ-S------VNVLGGYKVQGRD----EEA 159 (264)
T ss_pred HHHHHHHHHhCCeEEEEcCc------HHHHHHHHHHHHCCCCEeeeecccce-e------ecccCCeeeecCC----HHH
Confidence 33456677899999999998 46778999999999999888888422 1 1111111111110 112
Q ss_pred HHHHHHHHHHHHHccCcEEEEec
Q 022982 184 VDLLIRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 184 ~~~~I~~~~~dLeAGA~~ViiEa 206 (289)
.+++|+++++..+|||+.|.+|+
T Consensus 160 a~~~i~ra~a~~eAGA~~i~lE~ 182 (264)
T PRK00311 160 AEKLLEDAKALEEAGAFALVLEC 182 (264)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcC
Confidence 67999999999999999999998
No 79
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=94.21 E-value=0.94 Score=40.70 Aligned_cols=146 Identities=18% Similarity=0.229 Sum_probs=83.7
Q ss_pred chHHHHHHHHHHcCCCEEEecC-CcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcc
Q 022982 101 SAFKEYVEDCKQVGFDTIELNV-GSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTE 179 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISd-Gti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~ 179 (289)
..+++.++.|+++||+.||++. +....+.++..++.+.+++.|+++..--...+.. . ..+.. .+
T Consensus 15 ~~l~~~l~~~~~~G~~gvEi~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~--~--~~~~~--------~~--- 79 (274)
T COG1082 15 LPLEEILRKAAELGFDGVELSPGDLFPADYKELAELKELLADYGLEITSLAPFSNNL--L--SPDEE--------ER--- 79 (274)
T ss_pred CCHHHHHHHHHHhCCCeEecCCcccCCchhhhHHHHHHHHHHcCcEEEeecccCCCc--C--CCchh--------hH---
Confidence 4789999999999999999998 4444444447888889999999865533332210 0 01100 00
Q ss_pred ccccHHHHHHHHHHHHHccCcEEEEeccccccC------CCCc--cHHHH---HHHHhccCCCceEEec---C-----Cc
Q 022982 180 YVEDVDLLIRRAERCLEAGADMIMIDSDDVCKH------ADSL--RADII---AKVIGRLGLEKTMFEA---T-----NP 240 (289)
Q Consensus 180 ~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~------~G~~--r~d~v---~~ii~~l~~eklifEA---P-----~k 240 (289)
....+.+.+.++-.-+.||.+|++..-..... ...+ -.+.+ ..+++.. -=++-+|. | +.
T Consensus 80 -~~~~~~~~~~i~~a~~lg~~~vv~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~-~i~l~~e~~~~~~~~~~~~ 157 (274)
T COG1082 80 -EEALEELKRAIELAKELGAKVVVVHPGLGAGADDPDSPEEARERWAEALEELAEIAEEL-GIGLALENHHHPGNVVETG 157 (274)
T ss_pred -HHHHHHHHHHHHHHHHcCCCeEEeecccCCcCCCCCCCcccHHHHHHHHHHHHHHHHHh-CCceEEeecCCccceeecC
Confidence 01244444555556678999888776321111 1111 12222 2333334 33455664 3 33
Q ss_pred hhHHHHHHHhCCCcccc--cCCCCch
Q 022982 241 RTSEWFIRRYGPKVNLF--VDHSQVM 264 (289)
Q Consensus 241 ~qQ~~~I~~fG~~VNLg--I~~~eVl 264 (289)
.|...++...+.. |++ +++.+..
T Consensus 158 ~~~~~~~~~~~~~-~v~~~lD~~H~~ 182 (274)
T COG1082 158 ADALDLLREVDSP-NVGLLLDTGHAF 182 (274)
T ss_pred HHHHHHHHhcCCC-ceEEEEecCchh
Confidence 5568888888876 665 6665543
No 80
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=94.19 E-value=0.72 Score=48.16 Aligned_cols=153 Identities=14% Similarity=0.159 Sum_probs=107.3
Q ss_pred hhHHHHHHHhhcc-cccEEEecCccccccChhHHHHHHHHHHhCCceecCC---cHHHHHHHhCCchHHHHHHHHHHcCC
Q 022982 40 HNVLEDIFESMGQ-FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG---DWAEHLIRNGPSAFKEYVEDCKQVGF 115 (289)
Q Consensus 40 ~~~~~DlLe~ag~-yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~G---tlfE~a~~qg~~~~~~yl~~~k~lGF 115 (289)
-+-.+..++.|.+ -||.+.+....+-+ +.+++-++.++++|..+... |+-- ...++.+-++.+.+.+.|.
T Consensus 95 d~vv~~~v~~A~~~Gvd~irif~~lnd~---~n~~~~i~~ak~~G~~v~~~i~~t~~p---~~t~~~~~~~a~~l~~~Ga 168 (592)
T PRK09282 95 DDVVEKFVEKAAENGIDIFRIFDALNDV---RNMEVAIKAAKKAGAHVQGTISYTTSP---VHTIEKYVELAKELEEMGC 168 (592)
T ss_pred chhhHHHHHHHHHCCCCEEEEEEecChH---HHHHHHHHHHHHcCCEEEEEEEeccCC---CCCHHHHHHHHHHHHHcCC
Confidence 3445666666554 59999998766655 57999999999999876521 1100 1223466677777888999
Q ss_pred CEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHH
Q 022982 116 DTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCL 195 (289)
Q Consensus 116 ~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dL 195 (289)
+.|=|.|-.--+.+++-.++++.+++. +. -.+++.. ... ...-+...-..+
T Consensus 169 d~I~i~Dt~G~~~P~~~~~lv~~lk~~-~~--~pi~~H~-Hnt-------------------------~Gla~An~laAv 219 (592)
T PRK09282 169 DSICIKDMAGLLTPYAAYELVKALKEE-VD--LPVQLHS-HCT-------------------------SGLAPMTYLKAV 219 (592)
T ss_pred CEEEECCcCCCcCHHHHHHHHHHHHHh-CC--CeEEEEE-cCC-------------------------CCcHHHHHHHHH
Confidence 999999999999999999999999884 22 1245532 111 122266777789
Q ss_pred HccCcEEEEecc--ccccCCCCccHHHHHHHHhccC
Q 022982 196 EAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLG 229 (289)
Q Consensus 196 eAGA~~ViiEar--GI~d~~G~~r~d~v~~ii~~l~ 229 (289)
+|||+. |++- |+-...||...+.+-..++..+
T Consensus 220 ~aGad~--vD~ai~g~g~~agn~~~e~vv~~L~~~g 253 (592)
T PRK09282 220 EAGVDI--IDTAISPLAFGTSQPPTESMVAALKGTP 253 (592)
T ss_pred HhCCCE--EEeeccccCCCcCCHhHHHHHHHHHhCC
Confidence 999996 5554 8888889888877666665544
No 81
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=94.18 E-value=0.77 Score=43.06 Aligned_cols=79 Identities=18% Similarity=0.132 Sum_probs=51.3
Q ss_pred hhHHHHHHHhhccc--ccEEEecC--------ccccccChhHHHHHHHHHHhC-CceecC-CcHHHHHHHhCCchHHHHH
Q 022982 40 HNVLEDIFESMGQF--VDGLKFSG--------GSHSLMPKPFIEEVVKRAHQH-DVYVST-GDWAEHLIRNGPSAFKEYV 107 (289)
Q Consensus 40 ~~~~~DlLe~ag~y--ID~lKfg~--------GTs~l~p~~~l~eKI~l~~~~-gV~v~~-GtlfE~a~~qg~~~~~~yl 107 (289)
+..+.+..+.+-++ .|++=+-. |.......+.+.+-++-.+++ ++++.- -+. +.+.+.++.
T Consensus 103 ~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~-------~~~~~~~~a 175 (301)
T PRK07259 103 EEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTP-------NVTDIVEIA 175 (301)
T ss_pred HHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCC-------CchhHHHHH
Confidence 34444445555555 67775511 556667778889999988887 665543 111 112466778
Q ss_pred HHHHHcCCCEEEecCCcc
Q 022982 108 EDCKQVGFDTIELNVGSL 125 (289)
Q Consensus 108 ~~~k~lGF~~IEISdGti 125 (289)
+.+.+.|.|.|.+++.+.
T Consensus 176 ~~l~~~G~d~i~~~nt~~ 193 (301)
T PRK07259 176 KAAEEAGADGLSLINTLK 193 (301)
T ss_pred HHHHHcCCCEEEEEcccc
Confidence 888999999999977554
No 82
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=94.11 E-value=0.5 Score=48.50 Aligned_cols=171 Identities=13% Similarity=0.075 Sum_probs=114.4
Q ss_pred CCCCCCceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccChh-----------HHHHHHHHHHhCCceecC
Q 022982 20 KPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVYVST 88 (289)
Q Consensus 20 KPR~~GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~-----------~l~eKI~l~~~~gV~v~~ 88 (289)
+++-.++++.+.+++... -...++.+++ .-+|.+-+...||-++-+. .+++-++.++++|..|..
T Consensus 69 ~~~i~~~~~~~~~~i~~~-~d~~~e~~~~---~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~ 144 (524)
T PRK12344 69 HAKLAAFGSTRRAGVSAE-EDPNLQALLD---AGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIF 144 (524)
T ss_pred CcEEEEEeeccccCCCcc-cHHHHHHHHh---CCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 345555555555655321 1223333333 3467788887777654333 345888999999999877
Q ss_pred Cc-HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccc
Q 022982 89 GD-WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAF 167 (289)
Q Consensus 89 Gt-lfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~ 167 (289)
+. ++.-+....++.+-++++.+.+.|.+.|-+.|-.--+.+.+-.++|+.++++ +. ..+++.+ ..
T Consensus 145 ~~e~~~Da~r~d~~~l~~~~~~~~~~Gad~i~l~DTvG~~~P~~v~~li~~l~~~-~~--v~i~~H~-HN---------- 210 (524)
T PRK12344 145 DAEHFFDGYKANPEYALATLKAAAEAGADWVVLCDTNGGTLPHEVAEIVAEVRAA-PG--VPLGIHA-HN---------- 210 (524)
T ss_pred ccccccccccCCHHHHHHHHHHHHhCCCCeEEEccCCCCcCHHHHHHHHHHHHHh-cC--CeEEEEE-CC----------
Confidence 53 3322334455567788888899999999999999999999999999999885 22 2344432 11
Q ss_pred ccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEecc--ccccCCCCccHHHHHHHH
Q 022982 168 GAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVI 225 (289)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar--GI~d~~G~~r~d~v~~ii 225 (289)
|...-+-.....++|||+. ||+- |+=+..||...+.+-..+
T Consensus 211 ---------------D~GlA~ANslaAi~aGa~~--Vd~Tl~GlGERaGNa~lE~lv~~L 253 (524)
T PRK12344 211 ---------------DSGCAVANSLAAVEAGARQ--VQGTINGYGERCGNANLCSIIPNL 253 (524)
T ss_pred ---------------CCChHHHHHHHHHHhCCCE--EEEecccccccccCcCHHHHHHHH
Confidence 2233366777789999996 5765 888888998877665333
No 83
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=93.98 E-value=0.93 Score=47.49 Aligned_cols=171 Identities=12% Similarity=0.049 Sum_probs=123.0
Q ss_pred CCCceeEe----cCCCCCCCchhHHHHHHHhhccc-ccEEEecCccccccChhHHHHHHHHHHhCCceec-----CCcHH
Q 022982 23 RFGVTEMR----SPHYTLSSSHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS-----TGDWA 92 (289)
Q Consensus 23 ~~GlT~V~----DkGl~~~~g~~~~~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~-----~Gtlf 92 (289)
++-+-|.+ -+||... .-+-.+-+++.|.++ ||++-..- +|-.-++++.-|+.++++|..+. ++.-
T Consensus 75 nt~lqmL~Rg~N~vGy~~~-~d~vv~~~v~~a~~~Gidv~Rifd---~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp- 149 (596)
T PRK14042 75 NTQLSMLLRGQNLLGYRNY-ADDVVRAFVKLAVNNGVDVFRVFD---ALNDARNLKVAIDAIKSHKKHAQGAICYTTSP- 149 (596)
T ss_pred CCceEEEeccccccccccC-ChHHHHHHHHHHHHcCCCEEEEcc---cCcchHHHHHHHHHHHHcCCEEEEEEEecCCC-
Confidence 45677777 7788666 556667788875555 99988875 67777889999999999998543 3321
Q ss_pred HHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccc
Q 022982 93 EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVA 172 (289)
Q Consensus 93 E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~ 172 (289)
...++.+.++.+.+.++|.+.|=|.|-.--+.+.+-.++|+.+++. +. -.++... ...
T Consensus 150 ----~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~-~~--ipi~~H~-Hnt-------------- 207 (596)
T PRK14042 150 ----VHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQA-TG--LPVHLHS-HST-------------- 207 (596)
T ss_pred ----CCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhh-cC--CEEEEEe-CCC--------------
Confidence 2333466677777888999999999999999999999999999984 22 2244432 111
Q ss_pred cCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCC
Q 022982 173 RAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE 231 (289)
Q Consensus 173 ~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~e 231 (289)
...-+-..-..++|||+.|=.=-.|+-...||.-++.+-..++..+.+
T Consensus 208 -----------~Gla~an~laAieaGad~iD~ai~glGg~tGn~~tE~lv~~L~~~g~~ 255 (596)
T PRK14042 208 -----------SGLASICHYEAVLAGCNHIDTAISSFSGGASHPPTEALVAALTDTPYD 255 (596)
T ss_pred -----------CCcHHHHHHHHHHhCCCEEEeccccccCCCCcHhHHHHHHHHHhcCCC
Confidence 222356666789999996544445888888999988877777766643
No 84
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=93.91 E-value=2.3 Score=40.33 Aligned_cols=130 Identities=22% Similarity=0.290 Sum_probs=88.8
Q ss_pred chhHHHHHHHhhccc-ccEEEecCccccccChhHHHHHHHHHHh-CCc-e--ecC-CcHHHHHHHhCCchHHHHHHHHHH
Q 022982 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQ-HDV-Y--VST-GDWAEHLIRNGPSAFKEYVEDCKQ 112 (289)
Q Consensus 39 g~~~~~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~-~gV-~--v~~-GtlfE~a~~qg~~~~~~yl~~~k~ 112 (289)
.+.++.++++.+.++ |.-+.|.+|-..+.+ .+.+.++.+++ .|+ . +.| |.++ +++++..++
T Consensus 44 s~eei~~~i~~~~~~gv~~V~ltGGEPll~~--~l~~li~~i~~~~gi~~v~itTNG~ll-----------~~~~~~L~~ 110 (334)
T TIGR02666 44 TFEEIERLVRAFVGLGVRKVRLTGGEPLLRK--DLVELVARLAALPGIEDIALTTNGLLL-----------ARHAKDLKE 110 (334)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECccccccC--CHHHHHHHHHhcCCCCeEEEEeCchhH-----------HHHHHHHHH
Confidence 566777777765444 888999999988876 58888888777 455 3 334 5443 345677899
Q ss_pred cCCCEEEecCCccc-----------CChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCCccc
Q 022982 113 VGFDTIELNVGSLE-----------IPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (289)
Q Consensus 113 lGF~~IEISdGti~-----------i~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 180 (289)
.|++.|-||=.+.+ -+.+...+.|+.+++.|+. ++-.+-+..+.
T Consensus 111 ~gl~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~------------------------ 166 (334)
T TIGR02666 111 AGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGV------------------------ 166 (334)
T ss_pred cCCCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCC------------------------
Confidence 99999999965542 2457778899999999986 55443331100
Q ss_pred cccHHHHHHHHHHHHHccCcEEEEecc
Q 022982 181 VEDVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 181 ~~~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
+.+++.+.++...+.|+..-.+|--
T Consensus 167 --n~~ei~~l~~~~~~~gv~~~~ie~m 191 (334)
T TIGR02666 167 --NDDEIVDLAEFAKERGVTLRFIELM 191 (334)
T ss_pred --CHHHHHHHHHHHHhcCCeEEEEecc
Confidence 2445556666666889987777754
No 85
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=93.90 E-value=2 Score=43.90 Aligned_cols=156 Identities=11% Similarity=0.099 Sum_probs=109.4
Q ss_pred hHHHHHHHhh-cccccEEEecCccccccChhHHHHHHHHHHhCCceecC--C-cHHHHHHHhCCchHHHHHHHHHHcCCC
Q 022982 41 NVLEDIFESM-GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST--G-DWAEHLIRNGPSAFKEYVEDCKQVGFD 116 (289)
Q Consensus 41 ~~~~DlLe~a-g~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~--G-tlfE~a~~qg~~~~~~yl~~~k~lGF~ 116 (289)
.-.+-+++.| .+.||++-..- .+..-++++.-|+.++++|..+.. + |.-- ....+-+.++.+.+.++|.+
T Consensus 105 dvv~~fv~~a~~~Gidi~Rifd---~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp---~~t~~y~~~~a~~l~~~Gad 178 (468)
T PRK12581 105 DIVDKFISLSAQNGIDVFRIFD---ALNDPRNIQQALRAVKKTGKEAQLCIAYTTSP---VHTLNYYLSLVKELVEMGAD 178 (468)
T ss_pred hHHHHHHHHHHHCCCCEEEEcc---cCCCHHHHHHHHHHHHHcCCEEEEEEEEEeCC---cCcHHHHHHHHHHHHHcCCC
Confidence 3345556665 55699988875 677888999999999999987542 1 2100 01112366677778899999
Q ss_pred EEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHH
Q 022982 117 TIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLE 196 (289)
Q Consensus 117 ~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLe 196 (289)
.|=|.|-.--+.+++-.++|+.+++. . .-.++..+ .. |...-+-..-..++
T Consensus 179 ~I~IkDtaG~l~P~~v~~Lv~alk~~-~--~~pi~~H~-Hn-------------------------t~GlA~An~laAie 229 (468)
T PRK12581 179 SICIKDMAGILTPKAAKELVSGIKAM-T--NLPLIVHT-HA-------------------------TSGISQMTYLAAVE 229 (468)
T ss_pred EEEECCCCCCcCHHHHHHHHHHHHhc-c--CCeEEEEe-CC-------------------------CCccHHHHHHHHHH
Confidence 99999999999999999999999873 1 23355533 11 12233667777899
Q ss_pred ccCcEEEEeccccccCCCCccHHHHHHHHhccCCC
Q 022982 197 AGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE 231 (289)
Q Consensus 197 AGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~e 231 (289)
|||+.|=.=-.|+-...||.-++.+-..++..+.+
T Consensus 230 AGad~vD~ai~g~g~gagN~~tE~lv~~L~~~g~~ 264 (468)
T PRK12581 230 AGADRIDTALSPFSEGTSQPATESMYLALKEAGYD 264 (468)
T ss_pred cCCCEEEeeccccCCCcCChhHHHHHHHHHhcCCC
Confidence 99996533334888888999988877777665543
No 86
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=93.90 E-value=1.9 Score=41.22 Aligned_cols=97 Identities=26% Similarity=0.369 Sum_probs=68.0
Q ss_pred chhHHHHHHHhhccc-ccEEEecCccccccChhHHHHHHHHHHhCCcee--cC-CcHHHHHHHhCCchHHHHHHHHHHcC
Q 022982 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV--ST-GDWAEHLIRNGPSAFKEYVEDCKQVG 114 (289)
Q Consensus 39 g~~~~~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v--~~-GtlfE~a~~qg~~~~~~yl~~~k~lG 114 (289)
....+.++++.+.+. +..+-|++|--.+.| .+.+.++.++++|+.+ .| |+++ -++.++.+++.|
T Consensus 38 ~~e~~~~ii~~~~~~g~~~v~~~GGEPll~~--~~~~ii~~~~~~g~~~~l~TNG~ll----------~~e~~~~L~~~g 105 (358)
T TIGR02109 38 TTEEWTDVLTQAAELGVLQLHFSGGEPLARP--DLVELVAHARRLGLYTNLITSGVGL----------TEARLDALADAG 105 (358)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEeCccccccc--cHHHHHHHHHHcCCeEEEEeCCccC----------CHHHHHHHHhCC
Confidence 455677777665443 567889999998876 4889999999999854 34 6543 145677788899
Q ss_pred CCEEEecCCccc---------C--ChhHHHHHHHHHHHcCCccc
Q 022982 115 FDTIELNVGSLE---------I--PEETLLRYVRLVKSAGLKAK 147 (289)
Q Consensus 115 F~~IEISdGti~---------i--~~~~r~~lI~~~~~~G~~v~ 147 (289)
++.|.||=...+ . +.+.-.+.|+.+++.|+.+.
T Consensus 106 ~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v~ 149 (358)
T TIGR02109 106 LDHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKAAGLPLT 149 (358)
T ss_pred CCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCCceE
Confidence 999999965542 1 12333567788888887643
No 87
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=93.89 E-value=0.33 Score=45.58 Aligned_cols=86 Identities=21% Similarity=0.316 Sum_probs=61.8
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccc
Q 022982 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (289)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~ 183 (289)
..-.+..++.|.++|-|-|| ++..+.|+.+.+.|..|..++|..-. + +..++.+....+- ...
T Consensus 94 ~~a~r~~~~aGa~aVkiEd~------~~~~~~I~al~~agipV~gHiGL~pq-~------~~~~gg~~~~grt----~~~ 156 (254)
T cd06557 94 RNAARLMKEAGADAVKLEGG------AEVAETIRALVDAGIPVMGHIGLTPQ-S------VNQLGGYKVQGKT----EEE 156 (254)
T ss_pred HHHHHHHHHhCCeEEEEcCc------HHHHHHHHHHHHcCCCeeccccccce-e------eeccCCceeccCC----HHH
Confidence 33456677899999999998 47889999999999999988888422 1 1111111110000 112
Q ss_pred HHHHHHHHHHHHHccCcEEEEec
Q 022982 184 VDLLIRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 184 ~~~~I~~~~~dLeAGA~~ViiEa 206 (289)
.+++|+++++..+|||+.|.+|+
T Consensus 157 a~~~i~ra~a~~~AGA~~i~lE~ 179 (254)
T cd06557 157 AERLLEDALALEEAGAFALVLEC 179 (254)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcC
Confidence 68999999999999999999997
No 88
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=93.89 E-value=0.93 Score=42.65 Aligned_cols=143 Identities=18% Similarity=0.191 Sum_probs=86.3
Q ss_pred hhcccccEEEecCccccccChhHHHHHHHHHHhCCc--eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC-Ccc
Q 022982 49 SMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV--YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV-GSL 125 (289)
Q Consensus 49 ~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV--~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISd-Gti 125 (289)
.+.+|+|++|+|-+...=+ +.|++ +-+.|. .+..|.+.-.. .+..-++++++-|-+-|=+=. |+-
T Consensus 94 ~~~e~vdilqIgs~~~~n~--~LL~~----va~tgkPVilk~G~~~t~~------e~~~A~e~i~~~Gn~~i~L~eRg~~ 161 (250)
T PRK13397 94 EAYDYLDVIQVGARNMQNF--EFLKT----LSHIDKPILFKRGLMATIE------EYLGALSYLQDTGKSNIILCERGVR 161 (250)
T ss_pred HHHhcCCEEEECcccccCH--HHHHH----HHccCCeEEEeCCCCCCHH------HHHHHHHHHHHcCCCeEEEEccccC
Confidence 3445899999997654443 34433 223455 44567322111 122223344566775555555 766
Q ss_pred cCChhHH----HHHHHHHHH-cCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCc
Q 022982 126 EIPEETL----LRYVRLVKS-AGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (289)
Q Consensus 126 ~i~~~~r----~~lI~~~~~-~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~ 200 (289)
.-|...+ ++.|..+++ .++. +.+ +.| .+.+. .+.+...++..+.+||+
T Consensus 162 ~Y~~~~~n~~dl~ai~~lk~~~~lP----Viv--d~S--Hs~G~-------------------r~~v~~~a~AAvA~GAd 214 (250)
T PRK13397 162 GYDVETRNMLDIMAVPIIQQKTDLP----IIV--DVS--HSTGR-------------------RDLLLPAAKIAKAVGAN 214 (250)
T ss_pred CCCCccccccCHHHHHHHHHHhCCC----eEE--CCC--CCCcc-------------------cchHHHHHHHHHHhCCC
Confidence 6665544 466777776 2322 112 111 11122 23346778899999999
Q ss_pred EEEEecc-----ccccCCCCccHHHHHHHHhccCC
Q 022982 201 MIMIDSD-----DVCKHADSLRADIIAKVIGRLGL 230 (289)
Q Consensus 201 ~ViiEar-----GI~d~~G~~r~d~v~~ii~~l~~ 230 (289)
-+|||-- -++|....+..+.++++++++..
T Consensus 215 Gl~IE~H~~P~~A~sD~~q~l~~~~l~~l~~~~~~ 249 (250)
T PRK13397 215 GIMMEVHPDPDHALSDAAQQIDYKQLEQLGQELWQ 249 (250)
T ss_pred EEEEEecCCcccccCchhhhCCHHHHHHHHHHhcc
Confidence 9999983 69999999999999999987753
No 89
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=93.84 E-value=1.6 Score=45.72 Aligned_cols=151 Identities=11% Similarity=0.097 Sum_probs=107.5
Q ss_pred HHHHHHHhhccc-ccEEEecCccccccChhHHHHHHHHHHhCCcee-----cCCcHHHHHHHhCCchHHHHHHHHHHcCC
Q 022982 42 VLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV-----STGDWAEHLIRNGPSAFKEYVEDCKQVGF 115 (289)
Q Consensus 42 ~~~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v-----~~GtlfE~a~~qg~~~~~~yl~~~k~lGF 115 (289)
..+..++.|.+. ||.+-+.-. +-+-+.++.-|+.++++|..+ |+++- + ..++.+.++.+.+.+.|.
T Consensus 98 vv~~~v~~a~~~Gid~~rifd~---lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p-~----~~~~~~~~~a~~l~~~Ga 169 (593)
T PRK14040 98 VVERFVERAVKNGMDVFRVFDA---MNDPRNLETALKAVRKVGAHAQGTLSYTTSP-V----HTLQTWVDLAKQLEDMGV 169 (593)
T ss_pred HHHHHHHHHHhcCCCEEEEeee---CCcHHHHHHHHHHHHHcCCeEEEEEEEeeCC-c----cCHHHHHHHHHHHHHcCC
Confidence 456667766554 999988854 334467999999999999853 23321 1 123467778888889999
Q ss_pred CEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHH
Q 022982 116 DTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCL 195 (289)
Q Consensus 116 ~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dL 195 (289)
+.|=|.|-.--+.+.+-.++|+.+++. +. -.+++.+ .. |...-+......+
T Consensus 170 d~i~i~Dt~G~l~P~~~~~lv~~lk~~-~~--~pi~~H~-Hn-------------------------t~GlA~An~laAi 220 (593)
T PRK14040 170 DSLCIKDMAGLLKPYAAYELVSRIKKR-VD--VPLHLHC-HA-------------------------TTGLSTATLLKAI 220 (593)
T ss_pred CEEEECCCCCCcCHHHHHHHHHHHHHh-cC--CeEEEEE-CC-------------------------CCchHHHHHHHHH
Confidence 999999999999999999999999984 11 2345533 11 1233366777789
Q ss_pred HccCcEEEEeccccccCCCCccHHHHHHHHhccC
Q 022982 196 EAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (289)
Q Consensus 196 eAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~ 229 (289)
+|||+.|=.=-.|+=...||...+.+-..++..+
T Consensus 221 eAGa~~vD~ai~glG~~~Gn~~le~vv~~L~~~~ 254 (593)
T PRK14040 221 EAGIDGVDTAISSMSMTYGHSATETLVATLEGTE 254 (593)
T ss_pred HcCCCEEEeccccccccccchhHHHHHHHHHhcC
Confidence 9999965443358888889998887766666554
No 90
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=93.81 E-value=0.98 Score=45.97 Aligned_cols=146 Identities=14% Similarity=0.101 Sum_probs=102.9
Q ss_pred hcccccEEEecCccccccChhHHHHHHHHHHhCCceecCC---cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc
Q 022982 50 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG---DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE 126 (289)
Q Consensus 50 ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~G---tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~ 126 (289)
+..-||.+-+....+- .+.+++-|+.++++|..+... |+- - ...++.+-++.+.+.+.|.+.|=|.|-.--
T Consensus 105 ~~~Gvd~irif~~lnd---~~n~~~~i~~ak~~G~~v~~~i~~t~~-p--~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~ 178 (467)
T PRK14041 105 AEYGLDIIRIFDALND---IRNLEKSIEVAKKHGAHVQGAISYTVS-P--VHTLEYYLEFARELVDMGVDSICIKDMAGL 178 (467)
T ss_pred HHCCcCEEEEEEeCCH---HHHHHHHHHHHHHCCCEEEEEEEeccC-C--CCCHHHHHHHHHHHHHcCCCEEEECCccCC
Confidence 4446999998876665 457999999999999977621 110 0 112245667777788899999999999999
Q ss_pred CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEec
Q 022982 127 IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 127 i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEa 206 (289)
+.+.+-.++|+.+++. +.+ .++..+ ... ...-+-..-..++|||+.|=.=-
T Consensus 179 l~P~~v~~Lv~~lk~~-~~v--pI~~H~-Hnt-------------------------~GlA~AN~laAieaGad~vD~sv 229 (467)
T PRK14041 179 LTPKRAYELVKALKKK-FGV--PVEVHS-HCT-------------------------TGLASLAYLAAVEAGADMFDTAI 229 (467)
T ss_pred cCHHHHHHHHHHHHHh-cCC--ceEEEe-cCC-------------------------CCcHHHHHHHHHHhCCCEEEeec
Confidence 9999999999999984 221 234422 111 22236667778999999643333
Q ss_pred cccccCCCCccHHHHHHHHhccCC
Q 022982 207 DDVCKHADSLRADIIAKVIGRLGL 230 (289)
Q Consensus 207 rGI~d~~G~~r~d~v~~ii~~l~~ 230 (289)
.|+-...||..++.+-..++..+.
T Consensus 230 ~~~g~gagN~atE~lv~~L~~~g~ 253 (467)
T PRK14041 230 SPFSMGTSQPPFESMYYAFRENGK 253 (467)
T ss_pred cccCCCCCChhHHHHHHHHHhcCC
Confidence 488888899988887777766653
No 91
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=93.55 E-value=0.56 Score=46.94 Aligned_cols=124 Identities=11% Similarity=0.152 Sum_probs=85.6
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCcc-----
Q 022982 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSL----- 125 (289)
Q Consensus 53 yID~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~~GtlfE~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti----- 125 (289)
-|+-+=||+||..+.+.+.|++.++.++++ ++. + -.|+.+.-+|+. =++.++.+++.||+.|.|---|.
T Consensus 114 ~i~~iy~GGGTPs~L~~~~l~~ll~~i~~~~~l~--~--~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~vL 189 (449)
T PRK09058 114 PIHAVYFGGGTPTALSAEDLARLITALREYLPLA--P--DCEITLEGRINGFDDEKADAALDAGANRFSIGVQSFNTQVR 189 (449)
T ss_pred eeeEEEECCCccccCCHHHHHHHHHHHHHhCCCC--C--CCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHHH
Confidence 488999999999999999999999999885 221 1 123333233333 36889999999999998765554
Q ss_pred -----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCc
Q 022982 126 -----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (289)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~ 200 (289)
.-+.++-.+.|+.+++.||.... +..-++. |. +|.+.+.+.++..++.|.+
T Consensus 190 k~lgR~~~~~~~~~~i~~l~~~g~~~v~-~DlI~Gl----------------Pg-------qT~e~~~~~l~~~~~l~~~ 245 (449)
T PRK09058 190 RRAGRKDDREEVLARLEELVARDRAAVV-CDLIFGL----------------PG-------QTPEIWQQDLAIVRDLGLD 245 (449)
T ss_pred HHhCCCCCHHHHHHHHHHHHhCCCCcEE-EEEEeeC----------------CC-------CCHHHHHHHHHHHHhcCCC
Confidence 23455666778888888865222 2222221 11 1478888999999999999
Q ss_pred EEEE
Q 022982 201 MIMI 204 (289)
Q Consensus 201 ~Vii 204 (289)
.|-+
T Consensus 246 ~is~ 249 (449)
T PRK09058 246 GVDL 249 (449)
T ss_pred EEEE
Confidence 7754
No 92
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=93.55 E-value=0.72 Score=42.17 Aligned_cols=41 Identities=17% Similarity=0.328 Sum_probs=30.7
Q ss_pred cHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHh
Q 022982 183 DVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIG 226 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~ 226 (289)
+-++++.+.+..+++||+.|++ ||.||.++.- ...+.+|.+
T Consensus 185 ~dq~~~~~~~~ai~~Gad~iVv-GR~I~~a~dP--~~~a~~i~~ 225 (230)
T PRK00230 185 GDQKRVMTPAQAIAAGSDYIVV-GRPITQAADP--AAAYEAILA 225 (230)
T ss_pred chHHHHhCHHHHHHcCCCEEEE-CCcccCCCCH--HHHHHHHHH
Confidence 5677888899999999998866 8999988754 334455544
No 93
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=93.54 E-value=0.42 Score=46.45 Aligned_cols=115 Identities=10% Similarity=0.035 Sum_probs=78.6
Q ss_pred hHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEE
Q 022982 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIE 119 (289)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IE 119 (289)
..|-.-.+.+|-. |+=....++.+.|++.|+-+++. .-.++.=+++ .......+++.++.|.+.+...|.
T Consensus 17 ~~LaaAVS~AGgL------G~la~~~~~~e~l~~~i~~~~~l~tdkPfGVnl~---~~~~~~~~~~~l~vi~e~~v~~V~ 87 (320)
T cd04743 17 AEFAVAVAEGGGL------PFIALALMRGEQVKALLEETAELLGDKPWGVGIL---GFVDTELRAAQLAVVRAIKPTFAL 87 (320)
T ss_pred HHHHHHHHhCCcc------ccCCCCCCCHHHHHHHHHHHHHhccCCCeEEEEe---ccCCCcchHHHHHHHHhcCCcEEE
Confidence 3555556666632 33334567788899999999884 3333321220 001112478999999999999999
Q ss_pred ecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccC
Q 022982 120 LNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 199 (289)
Q Consensus 120 ISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA 199 (289)
++-|. |. . ++++++.|.+|.+.++- ++++++.+++||
T Consensus 88 ~~~G~---P~----~-~~~lk~~Gi~v~~~v~s-----------------------------------~~~A~~a~~~Ga 124 (320)
T cd04743 88 IAGGR---PD----Q-ARALEAIGISTYLHVPS-----------------------------------PGLLKQFLENGA 124 (320)
T ss_pred EcCCC---hH----H-HHHHHHCCCEEEEEeCC-----------------------------------HHHHHHHHHcCC
Confidence 98663 32 1 58889999988764432 567788999999
Q ss_pred cEEEEecc
Q 022982 200 DMIMIDSD 207 (289)
Q Consensus 200 ~~ViiEar 207 (289)
|.||+|+.
T Consensus 125 D~vVaqG~ 132 (320)
T cd04743 125 RKFIFEGR 132 (320)
T ss_pred CEEEEecC
Confidence 99999997
No 94
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=93.50 E-value=0.73 Score=46.55 Aligned_cols=96 Identities=22% Similarity=0.339 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 181 (289)
-++++++.+.+.|++.|-|.+..-++. .....|+.+++.|+.| ++.+-... + |.
T Consensus 97 vv~~~v~~A~~~Gvd~irif~~lnd~~--n~~~~v~~ak~~G~~v--~~~i~~t~---~------------p~------- 150 (448)
T PRK12331 97 VVESFVQKSVENGIDIIRIFDALNDVR--NLETAVKATKKAGGHA--QVAISYTT---S------------PV------- 150 (448)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecCcHH--HHHHHHHHHHHcCCeE--EEEEEeec---C------------CC-------
Confidence 578999999999999999999877775 3567899999999876 44442110 0 10
Q ss_pred ccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 182 ~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
-+++.+++.+++..++||+.|- |.|..|-..+..+.++++.+
T Consensus 151 ~~~~~~~~~a~~l~~~Gad~I~-----i~Dt~G~l~P~~v~~lv~al 192 (448)
T PRK12331 151 HTIDYFVKLAKEMQEMGADSIC-----IKDMAGILTPYVAYELVKRI 192 (448)
T ss_pred CCHHHHHHHHHHHHHcCCCEEE-----EcCCCCCCCHHHHHHHHHHH
Confidence 1588889999999999999764 67888888888887777654
No 95
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=93.44 E-value=0.73 Score=48.16 Aligned_cols=96 Identities=16% Similarity=0.229 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 181 (289)
.++.+++.+.+.|.+.|-|.|..-++ +.-...|+.+++.|+.+...+.... + +.
T Consensus 98 vv~~~v~~a~~~Gid~~rifd~lnd~--~~~~~ai~~ak~~G~~~~~~i~yt~--~---p~------------------- 151 (593)
T PRK14040 98 VVERFVERAVKNGMDVFRVFDAMNDP--RNLETALKAVRKVGAHAQGTLSYTT--S---PV------------------- 151 (593)
T ss_pred HHHHHHHHHHhcCCCEEEEeeeCCcH--HHHHHHHHHHHHcCCeEEEEEEEee--C---Cc-------------------
Confidence 68999999999999999999977776 3455789999999997654443321 1 11
Q ss_pred ccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 182 ~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
.|++.+++.++.-.++||+.|- |+|..|-..+..+.++++.+
T Consensus 152 ~~~~~~~~~a~~l~~~Gad~i~-----i~Dt~G~l~P~~~~~lv~~l 193 (593)
T PRK14040 152 HTLQTWVDLAKQLEDMGVDSLC-----IKDMAGLLKPYAAYELVSRI 193 (593)
T ss_pred cCHHHHHHHHHHHHHcCCCEEE-----ECCCCCCcCHHHHHHHHHHH
Confidence 1477888999999999999764 78999999999988888755
No 96
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=93.28 E-value=0.76 Score=43.89 Aligned_cols=123 Identities=19% Similarity=0.246 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhCCceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-----------cCChhHHHHHH
Q 022982 71 FIEEVVKRAHQHDVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL-----------EIPEETLLRYV 136 (289)
Q Consensus 71 ~l~eKI~l~~~~gV~v~~---GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti-----------~i~~~~r~~lI 136 (289)
.+..-=++++..+|+|.- .||-+ +..+.+.++...+.|...|-|-|.+. -+|.++..+-|
T Consensus 61 ~~~~~~~I~~~~~iPviaD~d~GyG~------~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI 134 (285)
T TIGR02317 61 VAEDARRITRVTDLPLLVDADTGFGE------AFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKI 134 (285)
T ss_pred HHHHHHHHHhccCCCEEEECCCCCCC------HHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHH
Confidence 333334456667887774 24543 22556677788899999999998653 36888888888
Q ss_pred HHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCc
Q 022982 137 RLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSL 216 (289)
Q Consensus 137 ~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~ 216 (289)
+.+++.-- -++|-+ ... -|. + .....++.|+++++..+||||.|.+|+- -
T Consensus 135 ~Aa~~a~~--~~d~~I---iAR----TDa-~------------~~~g~deAI~Ra~ay~~AGAD~vfi~g~--------~ 184 (285)
T TIGR02317 135 AAAVDAKR--DEDFVI---IAR----TDA-R------------AVEGLDAAIERAKAYVEAGADMIFPEAL--------T 184 (285)
T ss_pred HHHHHhcc--CCCEEE---EEE----cCc-c------------cccCHHHHHHHHHHHHHcCCCEEEeCCC--------C
Confidence 88887421 133433 111 111 0 0124789999999999999999999972 1
Q ss_pred cHHHHHHHHhccC
Q 022982 217 RADIIAKVIGRLG 229 (289)
Q Consensus 217 r~d~v~~ii~~l~ 229 (289)
..+.++++.+.++
T Consensus 185 ~~e~i~~~~~~i~ 197 (285)
T TIGR02317 185 SLEEFRQFAKAVK 197 (285)
T ss_pred CHHHHHHHHHhcC
Confidence 3566777777765
No 97
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=93.27 E-value=0.34 Score=47.20 Aligned_cols=179 Identities=20% Similarity=0.252 Sum_probs=97.0
Q ss_pred cccccEEEecCccccccChhHHHHHHHHHHhCCceecC--------C-cHHHHHHHhCCc----hHHHHHHHHHHcCCCE
Q 022982 51 GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST--------G-DWAEHLIRNGPS----AFKEYVEDCKQVGFDT 117 (289)
Q Consensus 51 g~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~--------G-tlfE~a~~qg~~----~~~~yl~~~k~lGF~~ 117 (289)
=+|||.+ .-|+-+++..+. ..-|+.||+|||+|.+ + .+++.++.++++ -+++.++.|+.+|||.
T Consensus 30 W~yvD~f-vywsh~~~~iPp--~~~idaAHknGV~Vlgti~~e~~~~~~~~~~lL~~~~~~~~~~a~kLv~lak~yGfDG 106 (339)
T cd06547 30 WQYVDTF-VYFSHSAVTIPP--ADWINAAHRNGVPVLGTFIFEWTGQVEWLEDFLKKDEDGSFPVADKLVEVAKYYGFDG 106 (339)
T ss_pred hhhhhee-ecccCccccCCC--cHHHHHHHhcCCeEEEEEEecCCCchHHHHHHhccCcccchHHHHHHHHHHHHhCCCc
Confidence 3688887 445555544421 4678899999999873 2 256667765221 2788999999999999
Q ss_pred EEecCCcccCChhHHHHHH---HHHHHcCCcccceeeeec--CC---------CCCCCcccccc----ccccccCCCCcc
Q 022982 118 IELNVGSLEIPEETLLRYV---RLVKSAGLKAKPKFAVMF--NK---------SDIPSDRDRAF----GAYVARAPRSTE 179 (289)
Q Consensus 118 IEISdGti~i~~~~r~~lI---~~~~~~G~~v~~E~g~k~--~~---------~evg~~~d~~~----~~~~~~~~~~~~ 179 (289)
+=|+-=+..-+.+++.+++ +.+++..=+-.|.+-+.- .. .+.. .++..| ..+..-+.|...
T Consensus 107 w~iN~E~~~~~~~~~~~l~~F~~~L~~~~~~~~~~~~v~WYDs~t~~G~l~wQn~Ln-~~N~~ff~~~D~~FlNY~W~~~ 185 (339)
T cd06547 107 WLINIETELGDAEKAKRLIAFLRYLKAKLHENVPGSLVIWYDSMTEDGKLSWQNELN-SKNKPFFDVCDGIFLNYWWTEE 185 (339)
T ss_pred eEeeeeccCCcHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCCCccchhhhhh-HHHHHHHhhhcceeEecCCCcc
Confidence 8887766643444444444 444443111111111110 00 0000 011110 012345667544
Q ss_pred ccccHHHHHHHH---HHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecC
Q 022982 180 YVEDVDLLIRRA---ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT 238 (289)
Q Consensus 180 ~~~~~~~~I~~~---~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklifEAP 238 (289)
..+...+..+.+ ..||=||.|. .+||.+ ..+++.++..-..+.+.++.-=|| ||
T Consensus 186 ~l~~s~~~a~~~g~~~~dvy~GiDv---~grg~~-~~~~~~~~~~~~~~~~~~~Svalf-ap 242 (339)
T cd06547 186 SLERSVQLAEGLGRSPYDVYVGVDV---WGRGTK-GGGGWNSDKALDEIKKAGLSVALF-AP 242 (339)
T ss_pred hHHHHHHHHHHcCCCHhHEEEEEEE---EcCCcc-cCCCCchhhhhhhhcccCeEEEEE-cC
Confidence 333332222222 3466677664 478754 356666565555666677776777 66
No 98
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=93.27 E-value=1.4 Score=41.95 Aligned_cols=150 Identities=17% Similarity=0.230 Sum_probs=104.5
Q ss_pred chhHHHHHHHh-hcccccEEEecCcccc---------------c---cChhHHHHHHHHHHhCCceecCC--cHHHHHHH
Q 022982 39 SHNVLEDIFES-MGQFVDGLKFSGGSHS---------------L---MPKPFIEEVVKRAHQHDVYVSTG--DWAEHLIR 97 (289)
Q Consensus 39 g~~~~~DlLe~-ag~yID~lKfg~GTs~---------------l---~p~~~l~eKI~l~~~~gV~v~~G--tlfE~a~~ 97 (289)
++..+.+++.. --.-.|++=||+=.|= | +..+..-+.++..++.++.+.-+ |++--.+.
T Consensus 29 ~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~ 108 (265)
T COG0159 29 DLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFN 108 (265)
T ss_pred CHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHH
Confidence 44566666665 4455899999986551 1 12233446677777777766555 78888888
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCC
Q 022982 98 NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (289)
Q Consensus 98 qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 177 (289)
+| +++|++.|++.|+|.+=| .++|.|+..++...++++|+..++=+-..
T Consensus 109 ~G---ie~F~~~~~~~GvdGliv----pDLP~ee~~~~~~~~~~~gi~~I~lvaPt------------------------ 157 (265)
T COG0159 109 YG---IEKFLRRAKEAGVDGLLV----PDLPPEESDELLKAAEKHGIDPIFLVAPT------------------------ 157 (265)
T ss_pred hh---HHHHHHHHHHcCCCEEEe----CCCChHHHHHHHHHHHHcCCcEEEEeCCC------------------------
Confidence 85 999999999999999876 57999999999999999988877643331
Q ss_pred ccccccHHHHHHHHHHHHHccCcEEEEecc-ccccCCCCccHHHHHHHHhcc
Q 022982 178 TEYVEDVDLLIRRAERCLEAGADMIMIDSD-DVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 178 ~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-GI~d~~G~~r~d~v~~ii~~l 228 (289)
+++++++++ .++..-+|-.=++ |++........+ +.++++++
T Consensus 158 -----t~~~rl~~i---~~~a~GFiY~vs~~GvTG~~~~~~~~-~~~~v~~v 200 (265)
T COG0159 158 -----TPDERLKKI---AEAASGFIYYVSRMGVTGARNPVSAD-VKELVKRV 200 (265)
T ss_pred -----CCHHHHHHH---HHhCCCcEEEEecccccCCCcccchh-HHHHHHHH
Confidence 234444444 4666677777788 888877765555 55555443
No 99
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=93.25 E-value=1.5 Score=42.71 Aligned_cols=141 Identities=19% Similarity=0.229 Sum_probs=92.5
Q ss_pred hHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCC--ceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 022982 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD--VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (289)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~g--V~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~I 118 (289)
..+-+.|..+| ||.+=+||-++.=.+ .+.++.+++.+ ..+. +| .+ ...+-++.+.+.|.+.|
T Consensus 26 ~~ia~~L~~~G--v~~IEvG~p~~~~~~----~e~i~~i~~~~~~~~i~--~~-----~r---~~~~di~~a~~~g~~~i 89 (365)
T TIGR02660 26 LAIARALDEAG--VDELEVGIPAMGEEE----RAVIRAIVALGLPARLM--AW-----CR---ARDADIEAAARCGVDAV 89 (365)
T ss_pred HHHHHHHHHcC--CCEEEEeCCCCCHHH----HHHHHHHHHcCCCcEEE--EE-----cC---CCHHHHHHHHcCCcCEE
Confidence 35566778888 888999976644222 33344444432 2222 11 22 22556788889999999
Q ss_pred EecCCccc--------CChhH----HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHH
Q 022982 119 ELNVGSLE--------IPEET----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (289)
Q Consensus 119 EISdGti~--------i~~~~----r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (289)
-+...+-+ .+.++ -.+.|+.+++.|++| +|+..+. . -.|++.
T Consensus 90 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v--~~~~ed~---------~---------------r~~~~~ 143 (365)
T TIGR02660 90 HISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFV--SVGGEDA---------S---------------RADPDF 143 (365)
T ss_pred EEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEE--EEeecCC---------C---------------CCCHHH
Confidence 98876533 22222 337899999999874 3443221 0 015888
Q ss_pred HHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 187 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 187 ~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
+++.++...++||+.| .|+|..|-..+..+.++++.+
T Consensus 144 l~~~~~~~~~~Ga~~i-----~l~DT~G~~~P~~v~~lv~~l 180 (365)
T TIGR02660 144 LVELAEVAAEAGADRF-----RFADTVGILDPFSTYELVRAL 180 (365)
T ss_pred HHHHHHHHHHcCcCEE-----EEcccCCCCCHHHHHHHHHHH
Confidence 8999999999999976 478999999988888887654
No 100
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=93.24 E-value=1.3 Score=42.01 Aligned_cols=101 Identities=20% Similarity=0.316 Sum_probs=72.5
Q ss_pred chhHHHHHHHhhccc-ccEEEecCccccccChhHHHHHHHHHHhC----CceecC-CcHHHHHHHhCCchHHHHHHHHHH
Q 022982 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQH----DVYVST-GDWAEHLIRNGPSAFKEYVEDCKQ 112 (289)
Q Consensus 39 g~~~~~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~----gV~v~~-GtlfE~a~~qg~~~~~~yl~~~k~ 112 (289)
.+.++.++++.+.++ +.-+.|.+|--.+.+ .+.+.++.++++ .|.+.| |++ ++++++.+++
T Consensus 50 s~eei~~~i~~~~~~gi~~I~~tGGEPll~~--~l~~li~~i~~~~~~~~i~itTNG~l-----------l~~~~~~L~~ 116 (331)
T PRK00164 50 SLEEIERLVRAFVALGVRKVRLTGGEPLLRK--DLEDIIAALAALPGIRDLALTTNGYL-----------LARRAAALKD 116 (331)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCcCcc--CHHHHHHHHHhcCCCceEEEEcCchh-----------HHHHHHHHHH
Confidence 556777777766555 788999999988775 588999999887 234455 543 3345677788
Q ss_pred cCCCEEEecCCccc----------CChhHHHHHHHHHHHcCC-cccceeee
Q 022982 113 VGFDTIELNVGSLE----------IPEETLLRYVRLVKSAGL-KAKPKFAV 152 (289)
Q Consensus 113 lGF~~IEISdGti~----------i~~~~r~~lI~~~~~~G~-~v~~E~g~ 152 (289)
.|.+.|-||=.+.+ -+.+...+.|+.+++.|+ .|+-.+-+
T Consensus 117 agl~~i~ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv 167 (331)
T PRK00164 117 AGLDRVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVL 167 (331)
T ss_pred cCCCEEEEEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEE
Confidence 99999999955432 346777889999999998 55544433
No 101
>PRK07094 biotin synthase; Provisional
Probab=93.23 E-value=3.9 Score=38.56 Aligned_cols=173 Identities=18% Similarity=0.170 Sum_probs=108.0
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHh-CCceec--CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc----
Q 022982 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQ-HDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL---- 125 (289)
Q Consensus 53 yID~lKfg~GTs~l~p~~~l~eKI~l~~~-~gV~v~--~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti---- 125 (289)
-+..+-|..|+...++.+.+.+.++..++ .++.+. +|. .-++.++..++.|++.|-++--+.
T Consensus 86 g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~l~i~~~~g~-----------~~~e~l~~Lk~aG~~~v~~glEs~~~~~ 154 (323)
T PRK07094 86 GYRTIVLQSGEDPYYTDEKIADIIKEIKKELDVAITLSLGE-----------RSYEEYKAWKEAGADRYLLRHETADKEL 154 (323)
T ss_pred CCCEEEEecCCCCCCCHHHHHHHHHHHHccCCceEEEecCC-----------CCHHHHHHHHHcCCCEEEeccccCCHHH
Confidence 46778888887666777889999999998 477543 332 336788899999999987765444
Q ss_pred ------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccC
Q 022982 126 ------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 199 (289)
Q Consensus 126 ------~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA 199 (289)
..+.+++.+.|+.+++.|+.|.+-+-+ +.. + ++.+++.+.++...+.++
T Consensus 155 ~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~ii--Glp----g-------------------et~ed~~~~l~~l~~l~~ 209 (323)
T PRK07094 155 YAKLHPGMSFENRIACLKDLKELGYEVGSGFMV--GLP----G-------------------QTLEDLADDILFLKELDL 209 (323)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHcCCeecceEEE--ECC----C-------------------CCHHHHHHHHHHHHhCCC
Confidence 477899999999999999987654433 110 0 136677777777778888
Q ss_pred cEEEEecc------ccccCCCCccHHHHHHHHh--ccCCCc--e----EEecCCchhHHHHHHHhCCCcccc-cCCCCc
Q 022982 200 DMIMIDSD------DVCKHADSLRADIIAKVIG--RLGLEK--T----MFEATNPRTSEWFIRRYGPKVNLF-VDHSQV 263 (289)
Q Consensus 200 ~~ViiEar------GI~d~~G~~r~d~v~~ii~--~l~~ek--l----ifEAP~k~qQ~~~I~~fG~~VNLg-I~~~eV 263 (289)
+.|-+-.= -+++.. ....+..-++++ ++=+.+ | =|+.=.|.+| ......|.|+=.+ +.|.++
T Consensus 210 ~~v~~~~~~P~pgTpl~~~~-~~~~~~~~~~~a~~R~~lp~~~i~~~~~~~~~~~~~~-~~~l~~Gan~~~~~~~~~~~ 286 (323)
T PRK07094 210 DMIGIGPFIPHPDTPLKDEK-GGSLELTLKVLALLRLLLPDANIPATTALGTLNPDGR-EKGLKAGANVVMPNLTPGEY 286 (323)
T ss_pred CeeeeeccccCCCCCcccCC-CCCHHHHHHHHHHHHHhCcCCCCcccCCccccCchhH-HHHHHcCCceecCCCCchhh
Confidence 87765431 244433 223333333331 111111 2 1222234433 3666777666555 776654
No 102
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=93.08 E-value=2.1 Score=41.37 Aligned_cols=129 Identities=25% Similarity=0.302 Sum_probs=85.8
Q ss_pred chhHHHHHHHhhccc-ccEEEecCccccccChhHHHHHHHHHHhCCcee--cC-CcHHHHHHHhCCchHHHHHHHHHHcC
Q 022982 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV--ST-GDWAEHLIRNGPSAFKEYVEDCKQVG 114 (289)
Q Consensus 39 g~~~~~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v--~~-GtlfE~a~~qg~~~~~~yl~~~k~lG 114 (289)
....+.++++.+.++ +-.+-|.+|--.+.| .+.+.++.+++.|+.+ .| |+++ -++.++..++.|
T Consensus 47 ~~e~~~~ii~~~~~~g~~~v~~~GGEPll~~--~~~~il~~~~~~g~~~~i~TNG~ll----------~~~~~~~L~~~g 114 (378)
T PRK05301 47 STEEWIRVLREARALGALQLHFSGGEPLLRK--DLEELVAHARELGLYTNLITSGVGL----------TEARLAALKDAG 114 (378)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEECCccCCch--hHHHHHHHHHHcCCcEEEECCCccC----------CHHHHHHHHHcC
Confidence 455677777765443 456788889988877 4889999999999844 45 5542 134556678889
Q ss_pred CCEEEecCCccc---------C--ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccc
Q 022982 115 FDTIELNVGSLE---------I--PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (289)
Q Consensus 115 F~~IEISdGti~---------i--~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~ 183 (289)
++.|.||=...+ . +.+.-.+.|+.+++.|++|.--+.+.. . +
T Consensus 115 ~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~vv~~--------~-------------------N 167 (378)
T PRK05301 115 LDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTLNAVIHR--------H-------------------N 167 (378)
T ss_pred CCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEEEEEeec--------C-------------------C
Confidence 999999965541 1 355667788899999887543333310 0 2
Q ss_pred HHHHHHHHHHHHHccCcEEEEec
Q 022982 184 VDLLIRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 184 ~~~~I~~~~~dLeAGA~~ViiEa 206 (289)
.+++.+.++-..+.|++.|.+..
T Consensus 168 ~~~i~~~~~~~~~lgv~~i~~~~ 190 (378)
T PRK05301 168 IDQIPRIIELAVELGADRLELAN 190 (378)
T ss_pred HHHHHHHHHHHHHcCCCEEEEec
Confidence 44555555555678999987643
No 103
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=92.98 E-value=0.8 Score=42.57 Aligned_cols=97 Identities=16% Similarity=0.198 Sum_probs=64.2
Q ss_pred HHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHH
Q 022982 108 EDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLL 187 (289)
Q Consensus 108 ~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~ 187 (289)
+..-+.|.++|-|-|+. +..+.|+.+++.++.|.-..+.... +-.-...++.++. . ..+.++.
T Consensus 96 ~~l~~aGa~gv~iED~~------~~~~~i~ai~~a~i~ViaRtd~~pq-~~~~~gg~~~~~~------~----~~~~~~a 158 (240)
T cd06556 96 KTFMRAGAAGVKIEGGE------WHIETLQMLTAAAVPVIAHTGLTPQ-SVNTSGGDEGQYR------G----DEAGEQL 158 (240)
T ss_pred HHHHHcCCcEEEEcCcH------HHHHHHHHHHHcCCeEEEEeCCchh-hhhccCCceeecc------C----HHHHHHH
Confidence 33445999999999984 4566788889998776665554210 0000011111110 0 2247899
Q ss_pred HHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCC
Q 022982 188 IRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGL 230 (289)
Q Consensus 188 I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~ 230 (289)
|++++...+|||+.|.+|+- ..+++.+|.+.++.
T Consensus 159 i~Ra~ay~~AGAd~i~~e~~---------~~e~~~~i~~~~~~ 192 (240)
T cd06556 159 IADALAYAPAGADLIVMECV---------PVELAKQITEALAI 192 (240)
T ss_pred HHHHHHHHHcCCCEEEEcCC---------CHHHHHHHHHhCCC
Confidence 99999999999999999963 46778888877663
No 104
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=92.97 E-value=0.79 Score=47.06 Aligned_cols=97 Identities=21% Similarity=0.302 Sum_probs=76.5
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 180 (289)
+-++.+++.+.+.|+|.+-|.|..-++ +.....|+.+++.|..+...+...- + +
T Consensus 97 dvv~~fv~~a~~~Gidi~RIfd~lndv--~nl~~ai~~vk~ag~~~~~~i~yt~--s-------p--------------- 150 (499)
T PRK12330 97 EVVDRFVEKSAENGMDVFRVFDALNDP--RNLEHAMKAVKKVGKHAQGTICYTV--S-------P--------------- 150 (499)
T ss_pred hHHHHHHHHHHHcCCCEEEEEecCChH--HHHHHHHHHHHHhCCeEEEEEEEec--C-------C---------------
Confidence 368899999999999999999999988 5556789999999987766554411 1 0
Q ss_pred cccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 181 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 181 ~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
.-|++.+++.+++-.++||+.|- |.|..|-..+..+.++++.+
T Consensus 151 ~~t~e~~~~~a~~l~~~Gad~I~-----IkDtaGll~P~~~~~LV~~L 193 (499)
T PRK12330 151 IHTVEGFVEQAKRLLDMGADSIC-----IKDMAALLKPQPAYDIVKGI 193 (499)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEE-----eCCCccCCCHHHHHHHHHHH
Confidence 11588899999999999999774 67788888888777777654
No 105
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=92.95 E-value=1.4 Score=39.11 Aligned_cols=96 Identities=15% Similarity=0.270 Sum_probs=63.3
Q ss_pred hhHHHHHHHhhcc-cccEEEec------------CccccccChhHHHHHHHHHHhC-CceecC---CcHHHHHHHhCCch
Q 022982 40 HNVLEDIFESMGQ-FVDGLKFS------------GGSHSLMPKPFIEEVVKRAHQH-DVYVST---GDWAEHLIRNGPSA 102 (289)
Q Consensus 40 ~~~~~DlLe~ag~-yID~lKfg------------~GTs~l~p~~~l~eKI~l~~~~-gV~v~~---GtlfE~a~~qg~~~ 102 (289)
+..+.+.-+.+-+ ..|.+++- +|++.+-..+.+.+.++-.++. ++.+.- .+|-+. ..
T Consensus 66 ~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~------~~ 139 (231)
T cd02801 66 PETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDE------EE 139 (231)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCc------hH
Confidence 4555555555444 68999885 5666677778899999988764 223322 234221 26
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccC--ChhHHHHHHHHHHH
Q 022982 103 FKEYVEDCKQVGFDTIELNVGSLEI--PEETLLRYVRLVKS 141 (289)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i--~~~~r~~lI~~~~~ 141 (289)
..++++.+.+.|++.|.|+.++... ...-..++++++++
T Consensus 140 ~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~ 180 (231)
T cd02801 140 TLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKE 180 (231)
T ss_pred HHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHh
Confidence 7888899999999999999987532 11223467777776
No 106
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=92.81 E-value=1.3 Score=42.46 Aligned_cols=100 Identities=21% Similarity=0.322 Sum_probs=65.3
Q ss_pred ccChhHHHHHHHHHHhC-----Ccee--cCC---cH------------HHHHHHhCCchHHHHHHHHHHcCCCEEEecCC
Q 022982 66 LMPKPFIEEVVKRAHQH-----DVYV--STG---DW------------AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVG 123 (289)
Q Consensus 66 l~p~~~l~eKI~l~~~~-----gV~v--~~G---tl------------fE~a~~qg~~~~~~yl~~~k~lGF~~IEISdG 123 (289)
-++.+.+++.|+-.+++ ||.+ ... .. .+.++..+. .++++++.+-+.+.+.|-.+-|
T Consensus 44 ~~~~~~l~~~i~~~~~~t~~pfgvnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~G 122 (330)
T PF03060_consen 44 GLTPEQLREEIRKIRALTDKPFGVNLFLPPPDPADEEDAWPKELGNAVLELCIEEGV-PFEEQLDVALEAKPDVVSFGFG 122 (330)
T ss_dssp TSSHHHHHHHHHHHHHH-SS-EEEEEETTSTTHHHH-HHHHHHTHHHHHHHHHHTT--SHHHHHHHHHHS--SEEEEESS
T ss_pred ccChHHHHHHHHHHHhhccccccccccccCcccchhhhhhhhhhHHHHHHHHHHhCc-ccccccccccccceEEEEeecc
Confidence 34556677777776665 4422 222 12 445555552 2778888888889999999988
Q ss_pred cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEE
Q 022982 124 SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIM 203 (289)
Q Consensus 124 ti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~Vi 203 (289)
.- . .++|+++++.|.+|.+-++- ++.++..+++|||.|+
T Consensus 123 ~p---~---~~~i~~l~~~gi~v~~~v~s-----------------------------------~~~A~~a~~~G~D~iv 161 (330)
T PF03060_consen 123 LP---P---PEVIERLHAAGIKVIPQVTS-----------------------------------VREARKAAKAGADAIV 161 (330)
T ss_dssp SC-------HHHHHHHHHTT-EEEEEESS-----------------------------------HHHHHHHHHTT-SEEE
T ss_pred cc---h---HHHHHHHHHcCCccccccCC-----------------------------------HHHHHHhhhcCCCEEE
Confidence 53 2 35889999999887764432 6778889999999999
Q ss_pred Eecc
Q 022982 204 IDSD 207 (289)
Q Consensus 204 iEar 207 (289)
+|+-
T Consensus 162 ~qG~ 165 (330)
T PF03060_consen 162 AQGP 165 (330)
T ss_dssp EE-T
T ss_pred Eecc
Confidence 9985
No 107
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=92.75 E-value=3.1 Score=39.25 Aligned_cols=80 Identities=13% Similarity=0.174 Sum_probs=58.6
Q ss_pred chHHHHHHHHHHcC-CCEEEecCC---cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCC
Q 022982 101 SAFKEYVEDCKQVG-FDTIELNVG---SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (289)
Q Consensus 101 ~~~~~yl~~~k~lG-F~~IEISdG---ti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~ 176 (289)
+.+.++++++-+.| .+.|=+.-. +..|+.++|.++++.+.+. +...+-+-.+ |+
T Consensus 21 ~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~---~~~~~pvi~g---v~---------------- 78 (290)
T TIGR00683 21 KGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDE---AKDQIALIAQ---VG---------------- 78 (290)
T ss_pred HHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHH---hCCCCcEEEe---cC----------------
Confidence 36888999999999 999888755 3579999999999998884 1111111111 11
Q ss_pred CccccccHHHHHHHHHHHHHccCcEEEEec
Q 022982 177 STEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 177 ~~~~~~~~~~~I~~~~~dLeAGA~~ViiEa 206 (289)
..+.++.++.++..-++|||.|++=.
T Consensus 79 ----~~~t~~~i~la~~a~~~Gad~v~v~~ 104 (290)
T TIGR00683 79 ----SVNLKEAVELGKYATELGYDCLSAVT 104 (290)
T ss_pred ----CCCHHHHHHHHHHHHHhCCCEEEEeC
Confidence 01377889999999999999999944
No 108
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=92.64 E-value=1.8 Score=40.60 Aligned_cols=143 Identities=11% Similarity=0.025 Sum_probs=91.9
Q ss_pred chHHHHHHHHHH-cCCCEEEecCC---cccCChhHHHHHHHHHHHcCCcccceeeeecC-CCCCCCccccccccccccCC
Q 022982 101 SAFKEYVEDCKQ-VGFDTIELNVG---SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFN-KSDIPSDRDRAFGAYVARAP 175 (289)
Q Consensus 101 ~~~~~yl~~~k~-lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~-~~evg~~~d~~~~~~~~~~~ 175 (289)
+.++++++++.+ .|.+.|=+.-. +..|+.++|+++++.+.+. ..-+.+ ...||
T Consensus 24 ~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~-------~~~~~~viagvg--------------- 81 (293)
T PRK04147 24 QGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEE-------AKGKVKLIAQVG--------------- 81 (293)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHH-------hCCCCCEEecCC---------------
Confidence 368899999999 99999988665 3579999999999998884 211110 00111
Q ss_pred CCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecCCchh---HHHHHHHhCC
Q 022982 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRT---SEWFIRRYGP 252 (289)
Q Consensus 176 ~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklifEAP~k~q---Q~~~I~~fG~ 252 (289)
..+..+.|++++..-++||+.|++=.--.+...-+---+-..++++..++.=+++-.|.... -..++.++-.
T Consensus 82 -----~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~lPv~iYn~P~~tg~~l~~~~l~~L~~ 156 (293)
T PRK04147 82 -----SVNTAEAQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADNPMIVYNIPALTGVNLSLDQFNELFT 156 (293)
T ss_pred -----CCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCchhhccCCCHHHHHHHhc
Confidence 11478889999999999999999987544333211122334556667777777887774322 3445555543
Q ss_pred Cccc-c--cCCCCchhhhhhh
Q 022982 253 KVNL-F--VDHSQVMDLECLR 270 (289)
Q Consensus 253 ~VNL-g--I~~~eVl~LE~LR 270 (289)
.=|+ | -...|+..+..++
T Consensus 157 ~pnvvgiK~s~~d~~~~~~~~ 177 (293)
T PRK04147 157 LPKVIGVKQTAGDLYQLERIR 177 (293)
T ss_pred CCCEEEEEeCCCCHHHHHHHH
Confidence 2344 3 3445565555554
No 109
>PRK00915 2-isopropylmalate synthase; Validated
Probab=92.51 E-value=1 Score=46.07 Aligned_cols=142 Identities=16% Similarity=0.150 Sum_probs=101.1
Q ss_pred ccEEEecCccccccChh-----------HHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 022982 54 VDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 122 (289)
Q Consensus 54 ID~lKfg~GTs~l~p~~-----------~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISd 122 (289)
++.+-+...+|-++-+. .+++-++.++++|..|..+ +|.+...+++.+.++++.+.+.|.+.|-+.|
T Consensus 93 ~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~--~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~D 170 (513)
T PRK00915 93 APRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFS--AEDATRTDLDFLCRVVEAAIDAGATTINIPD 170 (513)
T ss_pred CCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE--eCCCCCCCHHHHHHHHHHHHHcCCCEEEEcc
Confidence 45566666666554322 2478899999999987654 2333344556788888999999999999999
Q ss_pred CcccCChhHHHHHHHHHHHcCCcc--cceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCc
Q 022982 123 GSLEIPEETLLRYVRLVKSAGLKA--KPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (289)
Q Consensus 123 Gti~i~~~~r~~lI~~~~~~G~~v--~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~ 200 (289)
-.--+.+++-.++|+.++++ +.- ...+++.+ . .|....+-.+...++|||+
T Consensus 171 TvG~~~P~~~~~~i~~l~~~-~~~~~~v~l~~H~-H-------------------------ND~GlAvANslaAv~aGa~ 223 (513)
T PRK00915 171 TVGYTTPEEFGELIKTLRER-VPNIDKAIISVHC-H-------------------------NDLGLAVANSLAAVEAGAR 223 (513)
T ss_pred CCCCCCHHHHHHHHHHHHHh-CCCcccceEEEEe-c-------------------------CCCCHHHHHHHHHHHhCCC
Confidence 99999999999999999874 210 01344432 1 1233346777888999999
Q ss_pred EEEEecc--ccccCCCCccHHHHHHHHh
Q 022982 201 MIMIDSD--DVCKHADSLRADIIAKVIG 226 (289)
Q Consensus 201 ~ViiEar--GI~d~~G~~r~d~v~~ii~ 226 (289)
+ |++- |+=+..||...+.+-..+.
T Consensus 224 ~--Vd~Tv~GlGERaGNa~lE~vv~~L~ 249 (513)
T PRK00915 224 Q--VECTINGIGERAGNAALEEVVMALK 249 (513)
T ss_pred E--EEEEeecccccccCccHHHHHHHHH
Confidence 6 4775 8888999988887665554
No 110
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=92.47 E-value=3.4 Score=38.99 Aligned_cols=78 Identities=19% Similarity=0.113 Sum_probs=58.8
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccC
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 174 (289)
+.++++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. | ..|. .|+ +
T Consensus 21 ~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi--~gv-------~-------------- 77 (294)
T TIGR02313 21 EALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFA--PGT-------G-------------- 77 (294)
T ss_pred HHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEE--EEC-------C--------------
Confidence 367888999999999999876554 489999999999988773 1 1111 122 1
Q ss_pred CCCccccccHHHHHHHHHHHHHccCcEEEEecc
Q 022982 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 175 ~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
..+..+.|++++..-++|||.|++-.-
T Consensus 78 ------~~~t~~ai~~a~~A~~~Gad~v~v~pP 104 (294)
T TIGR02313 78 ------ALNHDETLELTKFAEEAGADAAMVIVP 104 (294)
T ss_pred ------cchHHHHHHHHHHHHHcCCCEEEEcCc
Confidence 114778899999999999999999874
No 111
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=92.29 E-value=0.66 Score=42.21 Aligned_cols=117 Identities=15% Similarity=0.247 Sum_probs=65.5
Q ss_pred CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCc
Q 022982 83 DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSD 162 (289)
Q Consensus 83 gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~ 162 (289)
||.++.| |-.++-. -+.+.++.||+.|+...=.++|+. |.+...+++..+-.. -+-+|..
T Consensus 41 GVt~SGG---EPllq~~--fl~~l~~~~k~~gi~~~leTnG~~--~~~~~~~l~~~~D~~------l~DiK~~------- 100 (213)
T PRK10076 41 GVTLSGG---EVLMQAE--FATRFLQRLRLWGVSCAIETAGDA--PASKLLPLAKLCDEV------LFDLKIM------- 100 (213)
T ss_pred EEEEeCc---hHHcCHH--HHHHHHHHHHHcCCCEEEECCCCC--CHHHHHHHHHhcCEE------EEeeccC-------
Confidence 6666666 3222222 467899999999999999999986 455555554432211 2233321
Q ss_pred cccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEecc-----ccccCCCCccHHHHHHHHhccCCCce
Q 022982 163 RDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-----DVCKHADSLRADIIAKVIGRLGLEKT 233 (289)
Q Consensus 163 ~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-----GI~d~~G~~r~d~v~~ii~~l~~ekl 233 (289)
|++.-..++ |. +.+.+++.++.-.++|++ +|-| |+.|+..+++ .+.++++.++++++
T Consensus 101 -d~~~~~~~t-------G~-~~~~il~nl~~l~~~g~~---v~iR~~vIPg~nd~~e~i~--~ia~~l~~l~~~~~ 162 (213)
T PRK10076 101 -DATQARDVV-------KM-NLPRVLENLRLLVSEGVN---VIPRLPLIPGFTLSRENMQ--QALDVLIPLGIKQI 162 (213)
T ss_pred -CHHHHHHHH-------CC-CHHHHHHHHHHHHhCCCc---EEEEEEEECCCCCCHHHHH--HHHHHHHHcCCceE
Confidence 111000011 11 367778889888999986 3446 6655543322 24445555665543
No 112
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=92.21 E-value=1.3 Score=46.35 Aligned_cols=96 Identities=16% Similarity=0.241 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 181 (289)
-++++++.+.+.|+|.|-|.+..-++ +.-.+.|+.+++.|+.|. ..+-.-. +|. +
T Consensus 97 vv~~~v~~A~~~Gvd~irif~~lnd~--~n~~~~i~~ak~~G~~v~--~~i~~t~---------------~p~-~----- 151 (592)
T PRK09282 97 VVEKFVEKAAENGIDIFRIFDALNDV--RNMEVAIKAAKKAGAHVQ--GTISYTT---------------SPV-H----- 151 (592)
T ss_pred hhHHHHHHHHHCCCCEEEEEEecChH--HHHHHHHHHHHHcCCEEE--EEEEecc---------------CCC-C-----
Confidence 58899999999999999999888776 455678999999998754 3331100 111 1
Q ss_pred ccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 182 ~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
|++.+++.+++-.++||+.| .|+|..|-..+..+.++++.+
T Consensus 152 -t~~~~~~~a~~l~~~Gad~I-----~i~Dt~G~~~P~~~~~lv~~l 192 (592)
T PRK09282 152 -TIEKYVELAKELEEMGCDSI-----CIKDMAGLLTPYAAYELVKAL 192 (592)
T ss_pred -CHHHHHHHHHHHHHcCCCEE-----EECCcCCCcCHHHHHHHHHHH
Confidence 58899999999999999977 478999999999888888655
No 113
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=92.20 E-value=2 Score=40.24 Aligned_cols=103 Identities=15% Similarity=0.227 Sum_probs=69.8
Q ss_pred chhHHHHHHH-hhcccccEEEecCccc-cccChhHHH-----------------HHHHHHH--hCCceecCCcHHHHHHH
Q 022982 39 SHNVLEDIFE-SMGQFVDGLKFSGGSH-SLMPKPFIE-----------------EVVKRAH--QHDVYVSTGDWAEHLIR 97 (289)
Q Consensus 39 g~~~~~DlLe-~ag~yID~lKfg~GTs-~l~p~~~l~-----------------eKI~l~~--~~gV~v~~GtlfE~a~~ 97 (289)
.++.+.+++. ..-.-+|++=+|+=.| .+.+-..++ +.+.-.+ ..++++..=|++..++.
T Consensus 24 ~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~ 103 (258)
T PRK13111 24 DLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPIFQ 103 (258)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHhh
Confidence 4455555443 4455699999997542 111111122 2222222 23454443377777777
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 022982 98 NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (289)
Q Consensus 98 qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (289)
.| +++|++.|++.|++.+=|. +||.++..++++.++++|+...+
T Consensus 104 ~G---~e~f~~~~~~aGvdGviip----DLp~ee~~~~~~~~~~~gl~~I~ 147 (258)
T PRK13111 104 YG---VERFAADAAEAGVDGLIIP----DLPPEEAEELRAAAKKHGLDLIF 147 (258)
T ss_pred cC---HHHHHHHHHHcCCcEEEEC----CCCHHHHHHHHHHHHHcCCcEEE
Confidence 75 9999999999999999996 68999999999999999998764
No 114
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=92.18 E-value=1.6 Score=41.44 Aligned_cols=155 Identities=12% Similarity=0.037 Sum_probs=98.3
Q ss_pred hhHHHHHHHhhcccccEEEecCccccccChh-----------HHHHHHHHHHhCCceecCCcHHHHHHHhCCc-----hH
Q 022982 40 HNVLEDIFESMGQFVDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVYVSTGDWAEHLIRNGPS-----AF 103 (289)
Q Consensus 40 ~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~-----------~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~-----~~ 103 (289)
.+.++..+++ =+|.+-+-..+|-.+.+. .+++-+++++++|..|..+- |-+..-+++ -+
T Consensus 77 ~~die~A~~~---g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~--ed~~r~d~~~~v~~~~ 151 (279)
T cd07947 77 KEDLKLVKEM---GLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL--EDITRADIYGFVLPFV 151 (279)
T ss_pred HHHHHHHHHc---CcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE--EcccCCCcccchHHHH
Confidence 3445555554 345666666666554442 35678889999998665421 333333221 46
Q ss_pred HHHHHHHHHcCCC-EEEecCCcccCCh-------hHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccC
Q 022982 104 KEYVEDCKQVGFD-TIELNVGSLEIPE-------ETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (289)
Q Consensus 104 ~~yl~~~k~lGF~-~IEISdGti~i~~-------~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 174 (289)
+++++.+.+.|.+ .|=+.|-.--..+ ++-.++++.+++. ++ +-.+++..+ ..
T Consensus 152 ~~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~~-p~~~l~~H~-Hn----------------- 212 (279)
T cd07947 152 NKLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKDCGV-PSENLEWHG-HN----------------- 212 (279)
T ss_pred HHHHHHHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHHhcCC-CCceEEEEe-cC-----------------
Confidence 6667777779999 6888887765544 4556888888773 21 111344433 11
Q ss_pred CCCccccccHHHHHHHHHHHHHccCcEEEEecc--ccccCCCCccHHHHHHHHhcc
Q 022982 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 175 ~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar--GI~d~~G~~r~d~v~~ii~~l 228 (289)
|...-+..+...++|||++ +++. |+=+..||.-++.+-..+..+
T Consensus 213 --------~~Gla~AN~laA~~aG~~~--vd~sv~GlGe~aGN~~tE~lv~~l~~~ 258 (279)
T cd07947 213 --------DFYKAVANAVAAWLYGASW--VNCTLLGIGERTGNCPLEAMVIEYAQL 258 (279)
T ss_pred --------CCChHHHHHHHHHHhCCCE--EEEecccccccccchhHHHHHHHHHHh
Confidence 2334477788899999997 5664 888999999998887767654
No 115
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=92.18 E-value=2.6 Score=40.13 Aligned_cols=124 Identities=13% Similarity=0.040 Sum_probs=77.3
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCC
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~ 176 (289)
+++.++++++.+.|.+.|=+.-.| ..|+.++|.++++.+.+. +=++.-=+|+ +
T Consensus 29 ~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv-------~---------------- 85 (309)
T cd00952 29 DETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGA-------T---------------- 85 (309)
T ss_pred HHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEe-------c----------------
Confidence 478899999999999999875443 489999999999998873 1011111222 0
Q ss_pred CccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc-CCCceEEecCCc---hhHHHHHHHhC
Q 022982 177 STEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL-GLEKTMFEATNP---RTSEWFIRRYG 251 (289)
Q Consensus 177 ~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l-~~eklifEAP~k---~qQ~~~I~~fG 251 (289)
..++++.+++++..-++|||.|++=.=-.+..+-+---+-..+|++.. ++.=+++-.|.. ..-..+++++-
T Consensus 86 ----~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~~~~l~~L~ 160 (309)
T cd00952 86 ----TLNTRDTIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRAAWAELA 160 (309)
T ss_pred ----cCCHHHHHHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcCchhcCCCCCHHHHHHHh
Confidence 114788899999999999999999875222221111122234445555 355566666532 22344444443
No 116
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=92.17 E-value=1.5 Score=40.57 Aligned_cols=91 Identities=15% Similarity=0.218 Sum_probs=67.9
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccH
Q 022982 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184 (289)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~ 184 (289)
+.++.+.+.|.+.|-|..-.-++ +.-.+.++.+++.|+.|.. ..... ..+ ++
T Consensus 89 ~~i~~a~~~g~~~iri~~~~s~~--~~~~~~i~~ak~~G~~v~~--~~~~~------------------~~~------~~ 140 (263)
T cd07943 89 DDLKMAADLGVDVVRVATHCTEA--DVSEQHIGAARKLGMDVVG--FLMMS------------------HMA------SP 140 (263)
T ss_pred HHHHHHHHcCCCEEEEEechhhH--HHHHHHHHHHHHCCCeEEE--EEEec------------------cCC------CH
Confidence 56788899999999986544333 3556799999999986433 33110 011 58
Q ss_pred HHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 185 DLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 185 ~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
+.+++.+++..++||+.|- |.|..|...++.+.++++.+
T Consensus 141 ~~~~~~~~~~~~~G~d~i~-----l~DT~G~~~P~~v~~lv~~l 179 (263)
T cd07943 141 EELAEQAKLMESYGADCVY-----VTDSAGAMLPDDVRERVRAL 179 (263)
T ss_pred HHHHHHHHHHHHcCCCEEE-----EcCCCCCcCHHHHHHHHHHH
Confidence 8899999999999999764 78899999999998888654
No 117
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=92.13 E-value=1.1 Score=42.37 Aligned_cols=97 Identities=13% Similarity=0.132 Sum_probs=68.0
Q ss_pred HHHHHHcCCCEEEecCCcccC--------Chh----HHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccC
Q 022982 107 VEDCKQVGFDTIELNVGSLEI--------PEE----TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (289)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i--------~~~----~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 174 (289)
++.+.+.|.+.|-+....-+. +.+ .-.+.|+.+++.|++|...+..-+.. + .+.
T Consensus 85 ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~-~----~~~--------- 150 (287)
T PRK05692 85 LEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGC-P----YEG--------- 150 (287)
T ss_pred HHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecC-C----CCC---------
Confidence 477788999999998655332 222 34579999999999876555543321 0 110
Q ss_pred CCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 175 ~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
..|++.+++.+++..++||+.|. |.|..|-..+..+.++++.+
T Consensus 151 ------~~~~~~~~~~~~~~~~~G~d~i~-----l~DT~G~~~P~~v~~lv~~l 193 (287)
T PRK05692 151 ------EVPPEAVADVAERLFALGCYEIS-----LGDTIGVGTPGQVRAVLEAV 193 (287)
T ss_pred ------CCCHHHHHHHHHHHHHcCCcEEE-----eccccCccCHHHHHHHHHHH
Confidence 11589999999999999999764 67788888887777777543
No 118
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=92.06 E-value=1.3 Score=42.90 Aligned_cols=91 Identities=14% Similarity=0.186 Sum_probs=69.7
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccH
Q 022982 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184 (289)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~ 184 (289)
+-++.+.+.|.+.|-|....-+. +.-.+.|+.+++.|++|. +..... + ..++
T Consensus 92 ~dl~~a~~~gvd~iri~~~~~e~--~~~~~~i~~ak~~G~~v~--~~l~~a-~-----------------------~~~~ 143 (337)
T PRK08195 92 DDLKMAYDAGVRVVRVATHCTEA--DVSEQHIGLARELGMDTV--GFLMMS-H-----------------------MAPP 143 (337)
T ss_pred HHHHHHHHcCCCEEEEEEecchH--HHHHHHHHHHHHCCCeEE--EEEEec-c-----------------------CCCH
Confidence 44788999999999998755544 345689999999998753 333211 0 1158
Q ss_pred HHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 185 DLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 185 ~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
+.++++++...++||+.| .|.|..|...++.+.+++..+
T Consensus 144 e~l~~~a~~~~~~Ga~~i-----~i~DT~G~~~P~~v~~~v~~l 182 (337)
T PRK08195 144 EKLAEQAKLMESYGAQCV-----YVVDSAGALLPEDVRDRVRAL 182 (337)
T ss_pred HHHHHHHHHHHhCCCCEE-----EeCCCCCCCCHHHHHHHHHHH
Confidence 999999999999999976 478999999999999888744
No 119
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=91.99 E-value=1.3 Score=40.82 Aligned_cols=141 Identities=21% Similarity=0.241 Sum_probs=90.4
Q ss_pred hHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhC--CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 022982 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (289)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~--gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~I 118 (289)
..+-+.|..+| ||.+=+|+-+. .++ =.+.++.+.+. ++.+. ++.+. -.+-++.+.+.|++.|
T Consensus 23 ~~i~~~L~~~G--v~~iE~g~p~~---~~~-~~e~~~~l~~~~~~~~~~-------~~~r~---~~~~v~~a~~~g~~~i 86 (259)
T cd07939 23 LAIARALDEAG--VDEIEVGIPAM---GEE-EREAIRAIVALGLPARLI-------VWCRA---VKEDIEAALRCGVTAV 86 (259)
T ss_pred HHHHHHHHHcC--CCEEEEecCCC---CHH-HHHHHHHHHhcCCCCEEE-------EeccC---CHHHHHHHHhCCcCEE
Confidence 45566777777 78888886442 211 12344444432 22211 11221 1344677889999999
Q ss_pred EecCCcccCC--------h----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHH
Q 022982 119 ELNVGSLEIP--------E----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (289)
Q Consensus 119 EISdGti~i~--------~----~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (289)
-++...-+.. . +.-.+.|+.+++.|+.|. |+..+. . ..+++.
T Consensus 87 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~--~~~~~~---------~---------------~~~~~~ 140 (259)
T cd07939 87 HISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS--VGAEDA---------S---------------RADPDF 140 (259)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE--EeeccC---------C---------------CCCHHH
Confidence 9976443332 1 334578999999998653 444211 0 015889
Q ss_pred HHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 187 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 187 ~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
+.+.+++..++|++.| .|.|..|...++.+.+++..+
T Consensus 141 ~~~~~~~~~~~G~~~i-----~l~DT~G~~~P~~v~~lv~~l 177 (259)
T cd07939 141 LIEFAEVAQEAGADRL-----RFADTVGILDPFTTYELIRRL 177 (259)
T ss_pred HHHHHHHHHHCCCCEE-----EeCCCCCCCCHHHHHHHHHHH
Confidence 9999999999999976 478999999999998888643
No 120
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=91.97 E-value=1.8 Score=39.40 Aligned_cols=123 Identities=11% Similarity=0.113 Sum_probs=78.8
Q ss_pred chhHHHHHHHhhcccccEEEecCccc---------------cccChhHHHHHHHHHHhCCceecCC--cHHHHHHHhCCc
Q 022982 39 SHNVLEDIFESMGQFVDGLKFSGGSH---------------SLMPKPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPS 101 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GTs---------------~l~p~~~l~eKI~l~~~~gV~v~~G--tlfE~a~~qg~~ 101 (289)
.++.++-+-+...+| +-+.+|-||- .++++..-.+.++.|+++||.+.|| |.-|+.-..
T Consensus 39 tp~a~~~I~~l~~~~-~~~~vGAGTVl~~e~a~~ai~aGA~FivSP~~~~~vi~~a~~~~i~~iPG~~TptEi~~A~--- 114 (201)
T PRK06015 39 TPAALDAIRAVAAEV-EEAIVGAGTILNAKQFEDAAKAGSRFIVSPGTTQELLAAANDSDVPLLPGAATPSEVMALR--- 114 (201)
T ss_pred CccHHHHHHHHHHHC-CCCEEeeEeCcCHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEeCCCCCHHHHHHHH---
Confidence 444554444444444 3466776662 2344456778899999999999998 789987554
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 181 (289)
++|++.|-+==...-= -.++|+.++. ++|.+-.. .+| + ++
T Consensus 115 ----------~~Ga~~vK~FPa~~~G----G~~yikal~~----plp~~~l~----ptG--G-------V~--------- 154 (201)
T PRK06015 115 ----------EEGYTVLKFFPAEQAG----GAAFLKALSS----PLAGTFFC----PTG--G-------IS--------- 154 (201)
T ss_pred ----------HCCCCEEEECCchhhC----CHHHHHHHHh----hCCCCcEE----ecC--C-------CC---------
Confidence 6899999875422110 1367777766 45544332 111 0 01
Q ss_pred ccHHHHHHHHHHHHHccCcEEEEeccccccC
Q 022982 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKH 212 (289)
Q Consensus 182 ~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~ 212 (289)
.+.+..+|+||+..+.. +.-++++
T Consensus 155 ------~~n~~~~l~ag~~~~~g-gs~l~~~ 178 (201)
T PRK06015 155 ------LKNARDYLSLPNVVCVG-GSWVAPK 178 (201)
T ss_pred ------HHHHHHHHhCCCeEEEE-chhhCCc
Confidence 47889999999998887 7777754
No 121
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=91.96 E-value=1.8 Score=44.59 Aligned_cols=172 Identities=12% Similarity=0.116 Sum_probs=119.1
Q ss_pred CCceeEe----cCCCCCCCchhHHHHHHHhhc-ccccEEEecCccccccChhHHHHHHHHHHhCCcee----c-CCcHHH
Q 022982 24 FGVTEMR----SPHYTLSSSHNVLEDIFESMG-QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV----S-TGDWAE 93 (289)
Q Consensus 24 ~GlT~V~----DkGl~~~~g~~~~~DlLe~ag-~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v----~-~GtlfE 93 (289)
+-+.|.. =+||.-. .-+-.+..++.+. .-||++-+.-..+-+ +.++.-++.++++|-.+ | +++-
T Consensus 77 t~lqmL~Rg~N~vGy~~y-~ddvv~~fv~~a~~~Gidi~RIfd~lndv---~nl~~ai~~vk~ag~~~~~~i~yt~sp-- 150 (499)
T PRK12330 77 SRLQMLLRGQNLLGYRHY-EDEVVDRFVEKSAENGMDVFRVFDALNDP---RNLEHAMKAVKKVGKHAQGTICYTVSP-- 150 (499)
T ss_pred CeEEEEEcccccCCccCc-chhHHHHHHHHHHHcCCCEEEEEecCChH---HHHHHHHHHHHHhCCeEEEEEEEecCC--
Confidence 4466665 3666554 4445566666654 559999998876666 57999999999999844 2 3321
Q ss_pred HHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccc
Q 022982 94 HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVAR 173 (289)
Q Consensus 94 ~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~ 173 (289)
...++.+.++.+.+.+.|.+.|=|.|-.--+.+++-.++|+.+++. +...-.+++.+ ..
T Consensus 151 ---~~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~-~~~~ipI~~H~-Hn---------------- 209 (499)
T PRK12330 151 ---IHTVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEA-CGEDTRINLHC-HS---------------- 209 (499)
T ss_pred ---CCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHh-CCCCCeEEEEe-CC----------------
Confidence 2344567777888889999999999999999999999999999984 10011244432 11
Q ss_pred CCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCC
Q 022982 174 APRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE 231 (289)
Q Consensus 174 ~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~e 231 (289)
|...-+-..-..++|||+.|=.=-.|+=...|+.-++.+-..++..+.+
T Consensus 210 ---------t~GlA~An~laAieAGad~vDtai~Glg~~aGn~atE~vv~~L~~~g~~ 258 (499)
T PRK12330 210 ---------TTGVTLVSLMKAIEAGVDVVDTAISSMSLGPGHNPTESLVEMLEGTGYT 258 (499)
T ss_pred ---------CCCcHHHHHHHHHHcCCCEEEeecccccccccchhHHHHHHHHHhcCCC
Confidence 1222356677789999996433334888888998888777777766643
No 122
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=91.89 E-value=5.8 Score=37.12 Aligned_cols=111 Identities=17% Similarity=0.158 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHc-CCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCC
Q 022982 102 AFKEYVEDCKQV-GFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (289)
Q Consensus 102 ~~~~yl~~~k~l-GF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 177 (289)
.+.++++++.+. |.+.|=+.-.| ..|+.++|.++++.+.+. +...+.+-.+ |+ .
T Consensus 22 ~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~---~~~~~~viag---v~--~-------------- 79 (288)
T cd00954 22 VLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEA---AKGKVTLIAH---VG--S-------------- 79 (288)
T ss_pred HHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHH---hCCCCeEEec---cC--C--------------
Confidence 688889999888 99998776543 689999999999988884 1111111111 11 0
Q ss_pred ccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc-CCCceEEecC
Q 022982 178 TEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL-GLEKTMFEAT 238 (289)
Q Consensus 178 ~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l-~~eklifEAP 238 (289)
.+.++.|+.++..-++||+.|++=.--.+..+-+---+-...|++.. ++.=++.-.|
T Consensus 80 ----~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~P 137 (288)
T cd00954 80 ----LNLKESQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIYHIP 137 (288)
T ss_pred ----CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeCc
Confidence 14788899999999999999997553222111111122233444555 4555555555
No 123
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=91.86 E-value=2.2 Score=41.66 Aligned_cols=135 Identities=19% Similarity=0.304 Sum_probs=101.0
Q ss_pred chhHHHHHHHhhccc-ccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022982 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (289)
Q Consensus 39 g~~~~~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (289)
.+.++..+...+..+ |+=+|+.+|=-.|=+ .|.+.|+..++++ +.|++++.|.-.+..+.+.+|+.|.+.
T Consensus 44 s~eei~~~~~~~~~~Gv~kvRlTGGEPllR~--dl~eIi~~l~~~~-------~~~islTTNG~~L~~~a~~Lk~AGl~r 114 (322)
T COG2896 44 SLEEIRRLVRAFAELGVEKVRLTGGEPLLRK--DLDEIIARLARLG-------IRDLSLTTNGVLLARRAADLKEAGLDR 114 (322)
T ss_pred CHHHHHHHHHHHHHcCcceEEEeCCCchhhc--CHHHHHHHHhhcc-------cceEEEecchhhHHHHHHHHHHcCCcE
Confidence 567888888888888 889999999988865 7999999999983 344555544345778888999999999
Q ss_pred EEecCCccc------CC----hhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCCccccccHHH
Q 022982 118 IELNVGSLE------IP----EETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (289)
Q Consensus 118 IEISdGti~------i~----~~~r~~lI~~~~~~G~~-v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (289)
|-||-.|++ |. .+.=.+=|+.|.+.||. ||=..-+.-+ + +.++
T Consensus 115 VNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kg---v-----------------------Nd~e 168 (322)
T COG2896 115 VNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKG---V-----------------------NDDE 168 (322)
T ss_pred EEeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecC---C-----------------------CHHH
Confidence 999988763 22 23334567899999997 7766666322 1 2455
Q ss_pred HHHHHHHHHHccCcEEEEeccc
Q 022982 187 LIRRAERCLEAGADMIMIDSDD 208 (289)
Q Consensus 187 ~I~~~~~dLeAGA~~ViiEarG 208 (289)
+...++-.-+-|+..=+||=..
T Consensus 169 i~~l~e~~~~~~~~lrfIE~m~ 190 (322)
T COG2896 169 IEDLLEFAKERGAQLRFIELMP 190 (322)
T ss_pred HHHHHHHHhhcCCceEEEEEee
Confidence 5666666779999999999763
No 124
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=91.84 E-value=4 Score=39.06 Aligned_cols=134 Identities=16% Similarity=0.161 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHhCCceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-------------cCChhHHH
Q 022982 70 PFIEEVVKRAHQHDVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL-------------EIPEETLL 133 (289)
Q Consensus 70 ~~l~eKI~l~~~~gV~v~~---GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti-------------~i~~~~r~ 133 (289)
+.+..-=++++.-+|+|.- .||-+.. .+.+-++...+.|.-.|-|-|+.. -+|.++..
T Consensus 62 e~~~~~~~I~~~~~lPv~aD~d~GyG~~~------~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~ 135 (290)
T TIGR02321 62 THLEMMRAIASTVSIPLIADIDTGFGNAV------NVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQ 135 (290)
T ss_pred HHHHHHHHHHhccCCCEEEECCCCCCCcH------HHHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHH
Confidence 3444444566777787774 1343221 344556666799999999988751 25888888
Q ss_pred HHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCC
Q 022982 134 RYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHA 213 (289)
Q Consensus 134 ~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~ 213 (289)
+-|+.+++. +--++|-+ ... -|. .|.. ...++.|+++++..+||||.|.+|+.
T Consensus 136 ~kI~Aa~~a--~~~~d~~I---~AR----TDa---------~~~~---~g~deAI~Ra~aY~eAGAD~ifv~~~------ 188 (290)
T TIGR02321 136 GKIAAATAA--RADRDFVV---IAR----VEA---------LIAG---LGQQEAVRRGQAYEEAGADAILIHSR------ 188 (290)
T ss_pred HHHHHHHHh--CCCCCEEE---EEE----ecc---------cccc---CCHHHHHHHHHHHHHcCCCEEEecCC------
Confidence 888888775 22234444 111 111 0111 13688999999999999999999972
Q ss_pred CCccHHHHHHHHhccCC-Cce-EEec
Q 022982 214 DSLRADIIAKVIGRLGL-EKT-MFEA 237 (289)
Q Consensus 214 G~~r~d~v~~ii~~l~~-ekl-ifEA 237 (289)
....+.+.++.+.++. -.+ +.+.
T Consensus 189 -~~~~~ei~~~~~~~~~p~pv~~~~~ 213 (290)
T TIGR02321 189 -QKTPDEILAFVKSWPGKVPLVLVPT 213 (290)
T ss_pred -CCCHHHHHHHHHhcCCCCCeEEecC
Confidence 2357889999988873 234 5554
No 125
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=91.82 E-value=1.9 Score=41.33 Aligned_cols=80 Identities=14% Similarity=0.166 Sum_probs=52.4
Q ss_pred hhHHHHHHHhhcccccEEEecCcccc------ccChhHHHHHHHHHHhC------Cc----eecCCcHHHHHHHhCCchH
Q 022982 40 HNVLEDIFESMGQFVDGLKFSGGSHS------LMPKPFIEEVVKRAHQH------DV----YVSTGDWAEHLIRNGPSAF 103 (289)
Q Consensus 40 ~~~~~DlLe~ag~yID~lKfg~GTs~------l~p~~~l~eKI~l~~~~------gV----~v~~GtlfE~a~~qg~~~~ 103 (289)
...+..+++.++++.|++=+-++|-. ...++.+.+.++..++. ++ ++.|+ +- .. .+
T Consensus 147 ~~d~~~~~~~~~~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~-~~-----~~--~~ 218 (327)
T cd04738 147 VEDYVIGVRKLGPYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPD-LS-----DE--EL 218 (327)
T ss_pred HHHHHHHHHHHHhhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCC-CC-----HH--HH
Confidence 34566666777888888888775543 34456677776666542 13 34343 11 11 46
Q ss_pred HHHHHHHHHcCCCEEEecCCcccC
Q 022982 104 KEYVEDCKQVGFDTIELNVGSLEI 127 (289)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i 127 (289)
.+..+.|.+.|.|.|.+++.+..+
T Consensus 219 ~~ia~~l~~aGad~I~~~n~~~~~ 242 (327)
T cd04738 219 EDIADVALEHGVDGIIATNTTISR 242 (327)
T ss_pred HHHHHHHHHcCCcEEEEECCcccc
Confidence 677788899999999999987654
No 126
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=91.81 E-value=3.1 Score=38.76 Aligned_cols=78 Identities=15% Similarity=0.136 Sum_probs=51.1
Q ss_pred hHHHHHHHhhccc-ccEEEecCcc--------ccccChhHHHHHHHHHHhC-CceecCC-cHHHHHHHhCCchHHHHHHH
Q 022982 41 NVLEDIFESMGQF-VDGLKFSGGS--------HSLMPKPFIEEVVKRAHQH-DVYVSTG-DWAEHLIRNGPSAFKEYVED 109 (289)
Q Consensus 41 ~~~~DlLe~ag~y-ID~lKfg~GT--------s~l~p~~~l~eKI~l~~~~-gV~v~~G-tlfE~a~~qg~~~~~~yl~~ 109 (289)
..+.+..+.+-++ .|++=+-++| +....++.+.+.++-.+++ ++++..- +. +.+.+.+..+.
T Consensus 102 ~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~-------~~~~~~~~a~~ 174 (296)
T cd04740 102 EEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTP-------NVTDIVEIARA 174 (296)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCC-------CchhHHHHHHH
Confidence 3444444444455 6777664443 4446667888999999888 7766642 11 11246677888
Q ss_pred HHHcCCCEEEecCCcc
Q 022982 110 CKQVGFDTIELNVGSL 125 (289)
Q Consensus 110 ~k~lGF~~IEISdGti 125 (289)
+.+.|.|.|-++|.+.
T Consensus 175 ~~~~G~d~i~~~nt~~ 190 (296)
T cd04740 175 AEEAGADGLTLINTLK 190 (296)
T ss_pred HHHcCCCEEEEECCCc
Confidence 9999999999886543
No 127
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=91.76 E-value=5 Score=36.88 Aligned_cols=102 Identities=16% Similarity=0.265 Sum_probs=63.4
Q ss_pred hhHHHHHHHhhcc-cccEEEecCcc-ccccChhHHH-----------------HHHHHHHhC-CceecCCcHHHHHHHhC
Q 022982 40 HNVLEDIFESMGQ-FVDGLKFSGGS-HSLMPKPFIE-----------------EVVKRAHQH-DVYVSTGDWAEHLIRNG 99 (289)
Q Consensus 40 ~~~~~DlLe~ag~-yID~lKfg~GT-s~l~p~~~l~-----------------eKI~l~~~~-gV~v~~GtlfE~a~~qg 99 (289)
+..+.+.+...-+ -+|++=+|.=. -.+++-..++ +.++..+++ ++++..=+.+...+..
T Consensus 13 ~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~- 91 (242)
T cd04724 13 LETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPILQY- 91 (242)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHHHh-
Confidence 3445554443333 49999999411 1134433444 233344432 4443221344444444
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 022982 100 PSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (289)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (289)
.+++|++.|++.|++.|=+-| +|.++..++++.++++|+++.+
T Consensus 92 --G~~~fi~~~~~aG~~giiipD----l~~ee~~~~~~~~~~~g~~~i~ 134 (242)
T cd04724 92 --GLERFLRDAKEAGVDGLIIPD----LPPEEAEEFREAAKEYGLDLIF 134 (242)
T ss_pred --CHHHHHHHHHHCCCcEEEECC----CCHHHHHHHHHHHHHcCCcEEE
Confidence 389999999999999998864 5678888999999999887544
No 128
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=91.73 E-value=1.5 Score=45.75 Aligned_cols=96 Identities=18% Similarity=0.258 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 181 (289)
-++++++.+.+.|+|.|-|.+..-++ +.-.+.|+.++++|+.|. +.+-... +|.
T Consensus 92 vv~~~v~~a~~~Gvd~irif~~lnd~--~n~~~~i~~ak~~G~~v~--~~i~~t~---------------~p~------- 145 (582)
T TIGR01108 92 VVERFVKKAVENGMDVFRIFDALNDP--RNLQAAIQAAKKHGAHAQ--GTISYTT---------------SPV------- 145 (582)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecCcH--HHHHHHHHHHHHcCCEEE--EEEEecc---------------CCC-------
Confidence 48889999999999999999777665 456678999999998654 3331100 111
Q ss_pred ccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 182 ~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
-|++.+++.+++..++||+.| .|+|..|-..+..+.++++.+
T Consensus 146 ~~~~~~~~~~~~~~~~Gad~I-----~i~Dt~G~~~P~~v~~lv~~l 187 (582)
T TIGR01108 146 HTLETYLDLAEELLEMGVDSI-----CIKDMAGILTPKAAYELVSAL 187 (582)
T ss_pred CCHHHHHHHHHHHHHcCCCEE-----EECCCCCCcCHHHHHHHHHHH
Confidence 158889999999999999976 478999999998888888655
No 129
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=91.71 E-value=1.5 Score=43.12 Aligned_cols=149 Identities=8% Similarity=0.035 Sum_probs=89.2
Q ss_pred HHHHHHHhhcccccEEEecCcccc-ccCh-hHHHHHHHHHHh-CCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHS-LMPK-PFIEEVVKRAHQ-HDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~-l~p~-~~l~eKI~l~~~-~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~I 118 (289)
.+-+.|..+| ||.+=.|+..+. ..|. ..-++-++.+++ .++. +...+ .+ .+=++.+.+.|.+.|
T Consensus 72 ~ia~~L~~~G--V~~IEvGs~vspk~vPqmad~~ev~~~i~~~~~~~-----~~~l~--~n----~~die~A~~~g~~~v 138 (347)
T PLN02746 72 ELIQRLVSSG--LPVVEATSFVSPKWVPQLADAKDVMAAVRNLEGAR-----FPVLT--PN----LKGFEAAIAAGAKEV 138 (347)
T ss_pred HHHHHHHHcC--CCEEEECCCcCcccccccccHHHHHHHHHhccCCc-----eeEEc--CC----HHHHHHHHHcCcCEE
Confidence 4556677788 888888865432 1110 011222333332 2221 11111 12 455677888999999
Q ss_pred EecCCc--------ccCChhHH----HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHH
Q 022982 119 ELNVGS--------LEIPEETL----LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (289)
Q Consensus 119 EISdGt--------i~i~~~~r----~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (289)
-+.-.+ +..+.++= .++|+.+++.|++|.--+..-|+. ..+. ..|++.
T Consensus 139 ~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~-----p~~~---------------r~~~~~ 198 (347)
T PLN02746 139 AVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGC-----PIEG---------------PVPPSK 198 (347)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecC-----CccC---------------CCCHHH
Confidence 887433 23444443 369999999999874333332311 1110 116899
Q ss_pred HHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 187 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 187 ~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
+++.+++..++||+.|. |.|..|-..+..+.++++.+
T Consensus 199 l~~~~~~~~~~Gad~I~-----l~DT~G~a~P~~v~~lv~~l 235 (347)
T PLN02746 199 VAYVAKELYDMGCYEIS-----LGDTIGVGTPGTVVPMLEAV 235 (347)
T ss_pred HHHHHHHHHHcCCCEEE-----ecCCcCCcCHHHHHHHHHHH
Confidence 99999999999999874 67888888877777777554
No 130
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=91.71 E-value=0.88 Score=43.60 Aligned_cols=116 Identities=19% Similarity=0.302 Sum_probs=77.6
Q ss_pred HHHhCCceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-----------ccCChhHHHHHHHHHHHcC
Q 022982 78 RAHQHDVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-----------LEIPEETLLRYVRLVKSAG 143 (289)
Q Consensus 78 l~~~~gV~v~~---GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt-----------i~i~~~~r~~lI~~~~~~G 143 (289)
++..-+|+|.- .||- ++..+.+.++...+.|.-.|-|-|.. --+|.++..+-|+.+++.-
T Consensus 73 I~~~~~iPviaD~d~GyG------~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~ 146 (292)
T PRK11320 73 ITDACDLPLLVDIDTGFG------GAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDAR 146 (292)
T ss_pred HHhccCCCEEEECCCCCC------CHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhc
Confidence 34555677664 1442 23356677788889999999998854 2379999888888887741
Q ss_pred CcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHH
Q 022982 144 LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAK 223 (289)
Q Consensus 144 ~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ 223 (289)
- -++|-+ ... -|. . + ....++.|+++++..+||||.|.+|+- -..+.+.+
T Consensus 147 ~--~~d~~I---iAR----TDa----~-----~----~~g~deAI~Ra~aY~eAGAD~ifi~~~--------~~~~~i~~ 196 (292)
T PRK11320 147 T--DPDFVI---MAR----TDA----L-----A----VEGLDAAIERAQAYVEAGADMIFPEAM--------TELEMYRR 196 (292)
T ss_pred c--CCCeEE---EEe----cCc----c-----c----ccCHHHHHHHHHHHHHcCCCEEEecCC--------CCHHHHHH
Confidence 1 133433 111 111 0 0 124789999999999999999999972 13677777
Q ss_pred HHhccC
Q 022982 224 VIGRLG 229 (289)
Q Consensus 224 ii~~l~ 229 (289)
+.+.++
T Consensus 197 ~~~~~~ 202 (292)
T PRK11320 197 FADAVK 202 (292)
T ss_pred HHHhcC
Confidence 887665
No 131
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=91.63 E-value=6.6 Score=38.56 Aligned_cols=142 Identities=21% Similarity=0.320 Sum_probs=91.8
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (289)
.+-+.|..+| ||.+=+||=.+ .++ =.+.++.+.+.+.....-+| .+ ...+-++.+.+.|++.|.|+
T Consensus 30 ~ia~~L~~~G--V~~IE~G~p~~---~~~-~~e~i~~i~~~~~~~~i~~~-----~r---~~~~di~~a~~~g~~~i~i~ 95 (378)
T PRK11858 30 AIARMLDEIG--VDQIEAGFPAV---SED-EKEAIKAIAKLGLNASILAL-----NR---AVKSDIDASIDCGVDAVHIF 95 (378)
T ss_pred HHHHHHHHhC--CCEEEEeCCCc---ChH-HHHHHHHHHhcCCCeEEEEE-----cc---cCHHHHHHHHhCCcCEEEEE
Confidence 4556677777 78888886433 222 23445555555554222233 11 12445778888999999998
Q ss_pred CCcccC--------Ch----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHH
Q 022982 122 VGSLEI--------PE----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (289)
Q Consensus 122 dGti~i--------~~----~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~ 189 (289)
..+-++ +. +.-.+.|+.+++.|+.| .|+..+. . -.|++.+++
T Consensus 96 ~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v--~~~~ed~---------~---------------r~~~~~l~~ 149 (378)
T PRK11858 96 IATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYV--SFSAEDA---------S---------------RTDLDFLIE 149 (378)
T ss_pred EcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeE--EEEeccC---------C---------------CCCHHHHHH
Confidence 765443 22 33345888999999874 3332110 0 015888999
Q ss_pred HHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 190 RAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 190 ~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
.++...++||+.|. |+|..|-..+..+.+++..+
T Consensus 150 ~~~~~~~~Ga~~I~-----l~DT~G~~~P~~v~~lv~~l 183 (378)
T PRK11858 150 FAKAAEEAGADRVR-----FCDTVGILDPFTMYELVKEL 183 (378)
T ss_pred HHHHHHhCCCCEEE-----EeccCCCCCHHHHHHHHHHH
Confidence 99999999999864 67888988888888877654
No 132
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=91.55 E-value=2.3 Score=40.89 Aligned_cols=124 Identities=18% Similarity=0.180 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhCCceecC-C--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-----------cCChhHHHHHH
Q 022982 71 FIEEVVKRAHQHDVYVST-G--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL-----------EIPEETLLRYV 136 (289)
Q Consensus 71 ~l~eKI~l~~~~gV~v~~-G--tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti-----------~i~~~~r~~lI 136 (289)
.+..--++++..+++|.- + ||-+. ..+.+.++...+.|.-.|-|-|... -+|.++..+-|
T Consensus 65 ~~~~~~~I~~~~~lPv~aD~dtGyG~~------~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI 138 (294)
T TIGR02319 65 QAINAKNIVLAVDVPVIMDADAGYGNA------MSVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKI 138 (294)
T ss_pred HHHHHHHHHhccCCCEEEECCCCCCCc------HHHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHH
Confidence 344444566777887774 1 34221 1244556777899999999988754 26888888888
Q ss_pred HHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCc
Q 022982 137 RLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSL 216 (289)
Q Consensus 137 ~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~ 216 (289)
+.+++.-= -++|-+ ...+ |. + . ....++.|+++++..+||||.|.+|+- .
T Consensus 139 ~Aa~~A~~--~~d~~I---~ART----Da-~--------~----~~g~deaI~Ra~aY~eAGAD~ifi~~~--------~ 188 (294)
T TIGR02319 139 EAAVEARE--DEDFTI---IART----DA-R--------E----SFGLDEAIRRSREYVAAGADCIFLEAM--------L 188 (294)
T ss_pred HHHHHhcc--CCCeEE---EEEe----cc-c--------c----cCCHHHHHHHHHHHHHhCCCEEEecCC--------C
Confidence 88776411 134444 1111 11 0 0 124789999999999999999999962 2
Q ss_pred cHHHHHHHHhccCC
Q 022982 217 RADIIAKVIGRLGL 230 (289)
Q Consensus 217 r~d~v~~ii~~l~~ 230 (289)
..+.+.++.+.++.
T Consensus 189 ~~~ei~~~~~~~~~ 202 (294)
T TIGR02319 189 DVEEMKRVRDEIDA 202 (294)
T ss_pred CHHHHHHHHHhcCC
Confidence 45778888887763
No 133
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=91.55 E-value=2.3 Score=36.91 Aligned_cols=93 Identities=16% Similarity=0.105 Sum_probs=60.5
Q ss_pred chhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhC--CceecCC-cHHHHHHHhCCchHHHHHHHHHHcCC
Q 022982 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGF 115 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~--gV~v~~G-tlfE~a~~qg~~~~~~yl~~~k~lGF 115 (289)
.+....++++...++||.+|+|+ ...++.. .+-|+..+++ ++++... ... + --..+++.+.+.|.
T Consensus 11 ~~~~~~~~~~~l~~~i~~ieig~--~~~~~~g--~~~i~~i~~~~~~~~i~~~~~v~------~--~~~~~~~~~~~aGa 78 (202)
T cd04726 11 DLEEALELAKKVPDGVDIIEAGT--PLIKSEG--MEAVRALREAFPDKIIVADLKTA------D--AGALEAEMAFKAGA 78 (202)
T ss_pred CHHHHHHHHHHhhhcCCEEEcCC--HHHHHhC--HHHHHHHHHHCCCCEEEEEEEec------c--ccHHHHHHHHhcCC
Confidence 56788899999999999999964 2222211 2344444443 6655432 222 2 11234688999999
Q ss_pred CEEEecCCcccCChhHHHHHHHHHHHcCCcc
Q 022982 116 DTIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (289)
Q Consensus 116 ~~IEISdGti~i~~~~r~~lI~~~~~~G~~v 146 (289)
+.|=+..-+ +.+.-.++++.++++|.++
T Consensus 79 d~i~~h~~~---~~~~~~~~i~~~~~~g~~~ 106 (202)
T cd04726 79 DIVTVLGAA---PLSTIKKAVKAAKKYGKEV 106 (202)
T ss_pred CEEEEEeeC---CHHHHHHHHHHHHHcCCeE
Confidence 999987654 2345567999999988653
No 134
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=91.54 E-value=0.87 Score=43.12 Aligned_cols=57 Identities=26% Similarity=0.453 Sum_probs=45.9
Q ss_pred HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------ccCChhHHHHHHHHHHHcCCcccc
Q 022982 91 WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------LEIPEETLLRYVRLVKSAGLKAKP 148 (289)
Q Consensus 91 lfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt-------i~i~~~~r~~lI~~~~~~G~~v~~ 148 (289)
..|.|+-.+ -+..+=+..+|++|||.||+|-.- ++-+.++|..+++.+.+.|+..-|
T Consensus 9 IYEKAlp~~-~sW~erl~~AK~~GFDFvEmSvDEsDeRLaRLDWs~~er~~l~~ai~etgv~ipS 72 (287)
T COG3623 9 IYEKALPNG-FSWLERLALAKELGFDFVEMSVDESDERLARLDWSKEERLALVNAIQETGVRIPS 72 (287)
T ss_pred eehhhccCC-CCHHHHHHHHHHcCCCeEEEeccchHHHHHhcCCCHHHHHHHHHHHHHhCCCccc
Confidence 346666554 356777888899999999999754 588999999999999999988654
No 135
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=91.45 E-value=2.1 Score=44.01 Aligned_cols=145 Identities=11% Similarity=0.052 Sum_probs=101.7
Q ss_pred ccEEEecCccccccChhH-----------HHHHHHHHHhCCce-ecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 022982 54 VDGLKFSGGSHSLMPKPF-----------IEEVVKRAHQHDVY-VSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (289)
Q Consensus 54 ID~lKfg~GTs~l~p~~~-----------l~eKI~l~~~~gV~-v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (289)
+|.+-+-..+|-++-+.. +.+-|+.++++|.. +..|. |.+..-+++-+.++++.+.+.|-+.|-+.
T Consensus 182 ~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~--EDa~Rtd~efl~~~~~~a~~~Gad~I~l~ 259 (503)
T PLN03228 182 RPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGC--EDGGRSDKEFLCKILGEAIKAGATSVGIA 259 (503)
T ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEecc--ccccccCHHHHHHHHHHHHhcCCCEEEEe
Confidence 356777777776664332 47788899999974 55443 44555555677889999999999999999
Q ss_pred CCcccCChhHHHHHHHHHHHcCCccc--ceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccC
Q 022982 122 VGSLEIPEETLLRYVRLVKSAGLKAK--PKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 199 (289)
Q Consensus 122 dGti~i~~~~r~~lI~~~~~~G~~v~--~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA 199 (289)
|-.--+.+.+-.++|+.+++. +... ..+++.+ . .|...-+-.+-..++|||
T Consensus 260 DTvG~~tP~~v~~lV~~l~~~-~~~~~~i~I~~H~-H-------------------------ND~GlAvANslaAi~aGa 312 (503)
T PLN03228 260 DTVGINMPHEFGELVTYVKAN-TPGIDDIVFSVHC-H-------------------------NDLGLATANTIAGICAGA 312 (503)
T ss_pred cCCCCCCHHHHHHHHHHHHHH-hccccCceeEecc-c-------------------------CCcChHHHHHHHHHHhCC
Confidence 999999999999999999873 1100 1123321 1 122333566777889999
Q ss_pred cEEEEeccccccCCCCccHHHHHHHHhc
Q 022982 200 DMIMIDSDDVCKHADSLRADIIAKVIGR 227 (289)
Q Consensus 200 ~~ViiEarGI~d~~G~~r~d~v~~ii~~ 227 (289)
++|=.=--||=+..||.-.+.+-..++.
T Consensus 313 ~~Vd~Tv~GiGERaGNa~lEevv~~L~~ 340 (503)
T PLN03228 313 RQVEVTINGIGERSGNASLEEVVMALKC 340 (503)
T ss_pred CEEEEeccccccccCCccHHHHHHHHHh
Confidence 9985533488889999988876666543
No 136
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=91.45 E-value=1.7 Score=41.32 Aligned_cols=82 Identities=20% Similarity=0.310 Sum_probs=58.7
Q ss_pred HHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHH
Q 022982 108 EDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLL 187 (289)
Q Consensus 108 ~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~ 187 (289)
+..++-|.++|-|-+| .+....|+.+.+.|.-|.-.+|..-.... .+ +.+....+ ..++.+++
T Consensus 100 rl~~eaGa~aVkiEgg------~~~~~~i~~l~~~gIpV~gHiGltPq~a~----~~---ggy~~qgr----t~~~a~~~ 162 (263)
T TIGR00222 100 RVMQETGANAVKLEGG------EWLVETVQMLTERGVPVVGHLGLTPQSVN----IL---GGYKVQGK----DEEAAKKL 162 (263)
T ss_pred HHHHHhCCeEEEEcCc------HhHHHHHHHHHHCCCCEEEecCCCceeEe----ec---CCeeecCC----CHHHHHHH
Confidence 6677889999999998 55678899999999999977777432111 00 10111000 01236789
Q ss_pred HHHHHHHHHccCcEEEEec
Q 022982 188 IRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 188 I~~~~~dLeAGA~~ViiEa 206 (289)
|+++++..+|||+.|.+|+
T Consensus 163 i~~A~a~e~AGA~~ivlE~ 181 (263)
T TIGR00222 163 LEDALALEEAGAQLLVLEC 181 (263)
T ss_pred HHHHHHHHHcCCCEEEEcC
Confidence 9999999999999999998
No 137
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=91.39 E-value=8.2 Score=33.25 Aligned_cols=96 Identities=17% Similarity=0.345 Sum_probs=68.0
Q ss_pred chhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceec--CCcHHHHHHHhCCchHHHHHHHHHHcC-C
Q 022982 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVG-F 115 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~--~GtlfE~a~~qg~~~~~~yl~~~k~lG-F 115 (289)
.+.++.++++.+..++..+.|.+|-..+.|+ +.+-++.+++.|+.++ +.|. .+++++...+.| .
T Consensus 48 ~~~~i~~~i~~~~~~~~~i~~sGGEPll~~~--l~~li~~~~~~g~~v~i~TNg~-----------~~~~l~~l~~~g~~ 114 (191)
T TIGR02495 48 EVEFLLEFLRSRQGLIDGVVITGGEPTLQAG--LPDFLRKVRELGFEVKLDTNGS-----------NPRVLEELLEEGLV 114 (191)
T ss_pred CHHHHHHHHHHhcCCCCeEEEECCcccCcHh--HHHHHHHHHHCCCeEEEEeCCC-----------CHHHHHHHHhcCCC
Confidence 5678888888888889999999999988773 8999999999998554 3221 234555666678 4
Q ss_pred CEEEecCCcc-c----C-----Ch-hHHHHHHHHHHHcCCccc
Q 022982 116 DTIELNVGSL-E----I-----PE-ETLLRYVRLVKSAGLKAK 147 (289)
Q Consensus 116 ~~IEISdGti-~----i-----~~-~~r~~lI~~~~~~G~~v~ 147 (289)
+.|-+|-... + + .. ++-.+.|+.+++.|+.+.
T Consensus 115 ~~v~isl~~~~~~~~~~~g~~~~~~~~~~~~i~~l~~~gi~~~ 157 (191)
T TIGR02495 115 DYVAMDVKAPPEKYPELYGLEKNGSNNILKSLEILLRSGIPFE 157 (191)
T ss_pred cEEEEeccCChHHHHHHHCCCCchHHHHHHHHHHHHHcCCCEE
Confidence 8887754421 1 1 11 145678888999887644
No 138
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=91.36 E-value=6.5 Score=34.43 Aligned_cols=135 Identities=19% Similarity=0.265 Sum_probs=72.6
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (289)
..+.+.+.-+++|=+- +..+...+.+-++.++++|+++.++ ..+|....+..+.+.++|.|.|-+.
T Consensus 68 ~~~~~~~~Gad~i~vh-------~~~~~~~~~~~i~~~~~~g~~~~~~-------~~~~~t~~~~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 68 EAEQAFAAGADIVTVL-------GVADDATIKGAVKAAKKHGKEVQVD-------LINVKDKVKRAKELKELGADYIGVH 133 (206)
T ss_pred HHHHHHHcCCCEEEEe-------ccCCHHHHHHHHHHHHHcCCEEEEE-------ecCCCChHHHHHHHHHcCCCEEEEc
Confidence 3677676666666433 2234456788999999999987642 0012223344455577899999886
Q ss_pred CCcccCCh-hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCc
Q 022982 122 VGSLEIPE-ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (289)
Q Consensus 122 dGti~i~~-~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~ 200 (289)
.|+-.-.. ....+.|+.+++. +. .+.+-+ . | + + + .+.++..+++||+
T Consensus 134 pg~~~~~~~~~~~~~i~~l~~~-~~-~~~i~v---~---G--G-----------------I-~----~~n~~~~~~~Ga~ 181 (206)
T TIGR03128 134 TGLDEQAKGQNPFEDLQTILKL-VK-EARVAV---A---G--G-----------------I-N----LDTIPDVIKLGPD 181 (206)
T ss_pred CCcCcccCCCCCHHHHHHHHHh-cC-CCcEEE---E---C--C-----------------c-C----HHHHHHHHHcCCC
Confidence 65431110 0122344444441 00 011211 0 0 0 0 0 3556678899999
Q ss_pred EEEEeccccccCCCCccHHHHHHHH
Q 022982 201 MIMIDSDDVCKHADSLRADIIAKVI 225 (289)
Q Consensus 201 ~ViiEarGI~d~~G~~r~d~v~~ii 225 (289)
.|++= +.||+++. ..+.+.++.
T Consensus 182 ~v~vG-sai~~~~d--~~~~~~~l~ 203 (206)
T TIGR03128 182 IVIVG-GAITKAAD--PAEAARQIR 203 (206)
T ss_pred EEEEe-ehhcCCCC--HHHHHHHHH
Confidence 88874 45887543 344455543
No 139
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=91.34 E-value=1.7 Score=38.92 Aligned_cols=89 Identities=17% Similarity=0.223 Sum_probs=58.4
Q ss_pred HHHHHHHHcCCCEEEecCCcccCCh-hHHHHHHHHHHHcC-CcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 022982 105 EYVEDCKQVGFDTIELNVGSLEIPE-ETLLRYVRLVKSAG-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (289)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~-~~r~~lI~~~~~~G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 182 (289)
+.++.|.+.|-+.|.+.......|. ++-.++++.+++.| +.+.+ ++ .
T Consensus 83 ~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv--~v---~-------------------------- 131 (219)
T cd04729 83 EEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEYNCLLMA--DI---S-------------------------- 131 (219)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEE--EC---C--------------------------
Confidence 4779999999999988655555555 36668999999987 43332 11 0
Q ss_pred cHHHHHHHHHHHHHccCcEEEEeccccccCC---CCccHHHHHHHHhcc
Q 022982 183 DVDLLIRRAERCLEAGADMIMIDSDDVCKHA---DSLRADIIAKVIGRL 228 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~---G~~r~d~v~~ii~~l 228 (289)
++ +.+++..++|+++|.++..|.+... .....+.+.++.+.+
T Consensus 132 t~----~ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~ 176 (219)
T cd04729 132 TL----EEALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL 176 (219)
T ss_pred CH----HHHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhc
Confidence 13 3346677899999998877754432 122345666666544
No 140
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=91.33 E-value=1.9 Score=44.42 Aligned_cols=152 Identities=16% Similarity=0.076 Sum_probs=86.9
Q ss_pred hHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCC---ceecCCcHHHH-HHHhC-CchHHHHHHHHHHcCC
Q 022982 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD---VYVSTGDWAEH-LIRNG-PSAFKEYVEDCKQVGF 115 (289)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~g---V~v~~GtlfE~-a~~qg-~~~~~~yl~~~k~lGF 115 (289)
..+-+.|..+| ||.+-.||-.+. | + -.+.++...+.. ...+.+....+ ++.+- .+.++.-++..++-|.
T Consensus 109 i~Ia~~L~~~G--Vd~IEvG~Pa~s--~-~-e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~dId~a~~a~~~a~~ 182 (503)
T PLN03228 109 LEIARQLAKLR--VDIMEVGFPGSS--E-E-EFEAVKTIAKTVGNEVDEETGYVPVICGIARCKKRDIEAAWEALKYAKR 182 (503)
T ss_pred HHHHHHHHHcC--CCEEEEeCCCCC--H-H-HHHHHHHHHHhcccccccccccceEEeeecccCHhhHHHHHHhhcccCC
Confidence 35567788888 888888883322 2 1 222233333221 11111211111 22221 0013333332334477
Q ss_pred CEEEecCCcccCChhHH------------HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccc
Q 022982 116 DTIELNVGSLEIPEETL------------LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (289)
Q Consensus 116 ~~IEISdGti~i~~~~r------------~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~ 183 (289)
+.|-+.-.+-++-.+.+ .+.|+.++++|+++ .+|+-.+ . . -.|
T Consensus 183 ~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~-v~f~~ED----------a----~----------Rtd 237 (503)
T PLN03228 183 PRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHD-IQFGCED----------G----G----------RSD 237 (503)
T ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCce-EEecccc----------c----c----------ccC
Confidence 88887666554443322 57888999998861 2333321 1 0 115
Q ss_pred HHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 184 VDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 184 ~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
++.+.+.++...++||+.| .|+|..|-..+..+.++++.+
T Consensus 238 ~efl~~~~~~a~~~Gad~I-----~l~DTvG~~tP~~v~~lV~~l 277 (503)
T PLN03228 238 KEFLCKILGEAIKAGATSV-----GIADTVGINMPHEFGELVTYV 277 (503)
T ss_pred HHHHHHHHHHHHhcCCCEE-----EEecCCCCCCHHHHHHHHHHH
Confidence 7888999999999999986 478899999988888877554
No 141
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=91.31 E-value=1.6 Score=44.95 Aligned_cols=136 Identities=22% Similarity=0.281 Sum_probs=91.0
Q ss_pred HHHhhcccccEE--EecCccccccChhHHHHHHHHHHhCC-ceecC--C-cHHHHHHH---------------hCCch-H
Q 022982 46 IFESMGQFVDGL--KFSGGSHSLMPKPFIEEVVKRAHQHD-VYVST--G-DWAEHLIR---------------NGPSA-F 103 (289)
Q Consensus 46 lLe~ag~yID~l--Kfg~GTs~l~p~~~l~eKI~l~~~~g-V~v~~--G-tlfE~a~~---------------qg~~~-~ 103 (289)
-|+..|+.+|=+ =|.+||+.-+|.+..+.-++.++++= -+... + .-+|-+.. -.|+. -
T Consensus 126 ~l~~~g~~~~kvE~i~~GGTft~l~~~y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiEtRPD~i~ 205 (522)
T TIGR01211 126 QLEQIGHPVDKVELIIMGGTFPARDLDYQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIETRPDYCR 205 (522)
T ss_pred HHHHhCCCCceEEEEEECCCcccCCHHHHHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEEEcCCcCC
Confidence 345577887643 38999999999999999999998761 11111 1 00222211 22333 4
Q ss_pred HHHHHHHHHcCCCEEEecCCcc----------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccc
Q 022982 104 KEYVEDCKQVGFDTIELNVGSL----------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVAR 173 (289)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti----------~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~ 173 (289)
++.++.++++|++.||+--=|. .-+.++-.+.++.+++.||++...+ ..++. .
T Consensus 206 ~e~L~~L~~~G~~rVslGVQS~~d~VL~~inRght~~~v~~Ai~~lr~~G~~v~~~L--M~GLP----g----------- 268 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGVQTIYNDILERTKRGHTVRDVVEATRLLRDAGLKVVYHI--MPGLP----G----------- 268 (522)
T ss_pred HHHHHHHHHcCCCEEEEECccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEEEEe--ecCCC----C-----------
Confidence 7899999999999999866555 3455666788999999999755443 22220 1
Q ss_pred CCCCccccccHHHHHHHHHHHHH---ccCcEEEEec
Q 022982 174 APRSTEYVEDVDLLIRRAERCLE---AGADMIMIDS 206 (289)
Q Consensus 174 ~~~~~~~~~~~~~~I~~~~~dLe---AGA~~ViiEa 206 (289)
+|.+..++.++..++ .+.|.|-+-.
T Consensus 269 --------qt~e~~~~t~~~l~~~~~l~pD~Ikiyp 296 (522)
T TIGR01211 269 --------SSFERDLEMFREIFEDPRFKPDMLKIYP 296 (522)
T ss_pred --------CCHHHHHHHHHHHHhccCCCcCEEEEec
Confidence 136667777777664 7899887666
No 142
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=91.29 E-value=2.9 Score=39.23 Aligned_cols=136 Identities=18% Similarity=0.217 Sum_probs=81.0
Q ss_pred cccccEEEecCccccccChhHHHHHHHHHHhCCc--eecCCc---HHHHHHHhCCchHHHHHHHHHHcCCCEEEecC-Cc
Q 022982 51 GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV--YVSTGD---WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV-GS 124 (289)
Q Consensus 51 g~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV--~v~~Gt---lfE~a~~qg~~~~~~yl~~~k~lGF~~IEISd-Gt 124 (289)
.+++|++|+|-++..=++ |.+ .+-+.|. .+++|. +-| ++.-++.+++-|-+-|=+-. |+
T Consensus 106 ~~~~d~lkI~s~~~~n~~---LL~---~~a~~gkPVilk~G~~~t~~e---------~~~Ave~i~~~Gn~~i~l~~rG~ 170 (260)
T TIGR01361 106 AEYADILQIGARNMQNFE---LLK---EVGKQGKPVLLKRGMGNTIEE---------WLYAAEYILSSGNGNVILCERGI 170 (260)
T ss_pred HhhCCEEEECcccccCHH---HHH---HHhcCCCcEEEeCCCCCCHHH---------HHHHHHHHHHcCCCcEEEEECCC
Confidence 377999999977544333 333 3344565 455673 322 22334555666775444422 44
Q ss_pred ccC-C---hhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccC
Q 022982 125 LEI-P---EETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 199 (289)
Q Consensus 125 i~i-~---~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA 199 (289)
-+- | .+--++.|..+++. ++. +|.- +... .++ .+.....+...+.+||
T Consensus 171 s~y~~~~~~~~dl~~i~~lk~~~~~p----V~~d-s~Hs---~G~-------------------r~~~~~~~~aAva~Ga 223 (260)
T TIGR01361 171 RTFEKATRNTLDLSAVPVLKKETHLP----IIVD-PSHA---AGR-------------------RDLVIPLAKAAIAAGA 223 (260)
T ss_pred CCCCCCCcCCcCHHHHHHHHHhhCCC----EEEc-CCCC---CCc-------------------cchHHHHHHHHHHcCC
Confidence 333 2 23445677777763 322 4441 1111 111 2233566778999999
Q ss_pred cEEEEec-----cccccCCCCccHHHHHHHHhcc
Q 022982 200 DMIMIDS-----DDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 200 ~~ViiEa-----rGI~d~~G~~r~d~v~~ii~~l 228 (289)
+-+|||. +.+.|..-.+..+.+.++++++
T Consensus 224 ~gl~iE~H~t~d~a~~D~~~sl~p~~l~~lv~~i 257 (260)
T TIGR01361 224 DGLMIEVHPDPEKALSDSKQQLTPEEFKRLVKEL 257 (260)
T ss_pred CEEEEEeCCCccccCCcchhcCCHHHHHHHHHHH
Confidence 9999998 3678999999999999998653
No 143
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=91.29 E-value=6.9 Score=38.40 Aligned_cols=130 Identities=16% Similarity=0.213 Sum_probs=84.8
Q ss_pred chhHHHHHHHhh-cccccEEEecCccccccChhHHHHHHHHHHhC-Cce---ecC-CcHHHHHHHhCCchHHHHHHHHHH
Q 022982 39 SHNVLEDIFESM-GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVY---VST-GDWAEHLIRNGPSAFKEYVEDCKQ 112 (289)
Q Consensus 39 g~~~~~DlLe~a-g~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~---v~~-GtlfE~a~~qg~~~~~~yl~~~k~ 112 (289)
...++.++++.+ ..-+..+.|.+|--.+.+ .+.+.++.+++. |+. +.| |++ +++.++..++
T Consensus 91 s~eei~~~i~~~~~~Gv~~I~~tGGEPllr~--dl~eli~~l~~~~gi~~i~itTNG~l-----------L~~~~~~L~~ 157 (373)
T PLN02951 91 SQDEIVRLAGLFVAAGVDKIRLTGGEPTLRK--DIEDICLQLSSLKGLKTLAMTTNGIT-----------LSRKLPRLKE 157 (373)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCcchh--hHHHHHHHHHhcCCCceEEEeeCcch-----------HHHHHHHHHh
Confidence 455666666543 234788999999988776 588999999986 653 344 544 2334557788
Q ss_pred cCCCEEEecCCccc----------CChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 022982 113 VGFDTIELNVGSLE----------IPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (289)
Q Consensus 113 lGF~~IEISdGti~----------i~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 181 (289)
.|++.|-||=.+++ -+.+..++.|+.+++.|+. |+-.+.+-.+.
T Consensus 158 aGld~VnISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vkin~vv~~g~------------------------- 212 (373)
T PLN02951 158 AGLTSLNISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKVNCVVMRGF------------------------- 212 (373)
T ss_pred CCCCeEEEeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEEEEEEecCCC-------------------------
Confidence 99999999966541 1236677889999999984 55444431110
Q ss_pred ccHHHHHHHHHHHHHccCcEEEEecc
Q 022982 182 EDVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 182 ~~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
+.+++.+.++-..+-|+..-.+|=-
T Consensus 213 -N~~Ei~~li~~a~~~gi~vr~ie~m 237 (373)
T PLN02951 213 -NDDEICDFVELTRDKPINVRFIEFM 237 (373)
T ss_pred -CHHHHHHHHHHHHhCCCeEEEEEcc
Confidence 1334445555555688887777764
No 144
>PLN02417 dihydrodipicolinate synthase
Probab=91.16 E-value=0.65 Score=43.51 Aligned_cols=78 Identities=10% Similarity=0.071 Sum_probs=58.8
Q ss_pred chHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccC
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 174 (289)
+.+.++++++-+.|.+.|=+.-. +..|+.++|.++++.+.+. | +.|. +|+ +
T Consensus 22 ~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi--~gv-------~-------------- 78 (280)
T PLN02417 22 EAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVI--GNT-------G-------------- 78 (280)
T ss_pred HHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEE--EEC-------C--------------
Confidence 46888999999999999987544 3489999999999998874 1 1111 122 1
Q ss_pred CCCccccccHHHHHHHHHHHHHccCcEEEEecc
Q 022982 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 175 ~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
..++.+.+++++..-++|||.|++-.-
T Consensus 79 ------~~~t~~~i~~a~~a~~~Gadav~~~~P 105 (280)
T PLN02417 79 ------SNSTREAIHATEQGFAVGMHAALHINP 105 (280)
T ss_pred ------CccHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 114788899999999999999999764
No 145
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=91.14 E-value=4.1 Score=38.15 Aligned_cols=143 Identities=13% Similarity=0.188 Sum_probs=92.3
Q ss_pred hHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 022982 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (289)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEI 120 (289)
..+-+.|..+| ||.+=+|+..+. | ...+-++...+.+.....-+|. . .-.+.++.+.+.|.+.|-+
T Consensus 25 ~~i~~~L~~~G--v~~IEvG~P~~~--~--~~~~~~~~l~~~~~~~~v~~~~-----r---~~~~di~~a~~~g~~~i~i 90 (262)
T cd07948 25 IEIAKALDAFG--VDYIELTSPAAS--P--QSRADCEAIAKLGLKAKILTHI-----R---CHMDDARIAVETGVDGVDL 90 (262)
T ss_pred HHHHHHHHHcC--CCEEEEECCCCC--H--HHHHHHHHHHhCCCCCcEEEEe-----c---CCHHHHHHHHHcCcCEEEE
Confidence 45667788888 999999975443 3 2344455554444321112231 2 2234688888899999998
Q ss_pred cCCc--------ccCChhH----HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHH
Q 022982 121 NVGS--------LEIPEET----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 188 (289)
Q Consensus 121 SdGt--------i~i~~~~----r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I 188 (289)
.... ...+.++ -.++|+.+++.|++| .++..+.. + + +++.+.
T Consensus 91 ~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v--~~~~eda~-----------r---~----------~~~~l~ 144 (262)
T cd07948 91 VFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEV--RFSSEDSF-----------R---S----------DLVDLL 144 (262)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeE--EEEEEeeC-----------C---C----------CHHHHH
Confidence 5432 2333333 456678999999763 44553211 0 1 367788
Q ss_pred HHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 189 RRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 189 ~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
+.+++..++||+.| .|.|..|-..++.+.++++.+
T Consensus 145 ~~~~~~~~~g~~~i-----~l~Dt~G~~~P~~v~~~~~~~ 179 (262)
T cd07948 145 RVYRAVDKLGVNRV-----GIADTVGIATPRQVYELVRTL 179 (262)
T ss_pred HHHHHHHHcCCCEE-----EECCcCCCCCHHHHHHHHHHH
Confidence 88888899999966 478889999999998888754
No 146
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=91.04 E-value=3.5 Score=38.51 Aligned_cols=143 Identities=13% Similarity=0.098 Sum_probs=96.6
Q ss_pred chHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccC
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 174 (289)
+.+.++++++-+.|.+.|=+.-. +..|+.++|.++++.+.+. | ..|+ +|+ +
T Consensus 19 ~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi--~gv-------~-------------- 75 (285)
T TIGR00674 19 AALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVI--AGT-------G-------------- 75 (285)
T ss_pred HHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEE--EeC-------C--------------
Confidence 36788899999999999987322 2689999999999998884 1 1111 122 0
Q ss_pred CCCccccccHHHHHHHHHHHHHccCcEEEEecc-------------------------ccccC---CC-CccHHHHHHHH
Q 022982 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKH---AD-SLRADIIAKVI 225 (289)
Q Consensus 175 ~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-------------------------GI~d~---~G-~~r~d~v~~ii 225 (289)
..+.++.|++++..-++|||.|++=.- -||+. .| .+..+++.+++
T Consensus 76 ------~~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~ 149 (285)
T TIGR00674 76 ------SNATEEAISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLYPETVKRLA 149 (285)
T ss_pred ------CccHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECcHHhcCCCCHHHHHHHH
Confidence 114788899999999999999998752 14543 23 56677888776
Q ss_pred hccCCCceEE--e-cCCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCCC
Q 022982 226 GRLGLEKTMF--E-ATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLGK 276 (289)
Q Consensus 226 ~~l~~eklif--E-AP~k~qQ~~~I~~fG~~VNLgI~~~eVl~LE~LR~g~~G~ 276 (289)
+ .+ +++- + .++......+++++++++.+..-.+ -+-+++++.|.-|-
T Consensus 150 ~-~~--~v~giK~s~~d~~~~~~l~~~~~~~~~v~~G~d-~~~~~~~~~G~~G~ 199 (285)
T TIGR00674 150 E-EP--NIVAIKEATGNLERISEIKAIAPDDFVVLSGDD-ALTLPMMALGGKGV 199 (285)
T ss_pred c-CC--CEEEEEeCCCCHHHHHHHHHhcCCCeEEEECch-HHHHHHHHcCCCEE
Confidence 4 33 4443 3 3445666667788877776654433 45578888775554
No 147
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=90.89 E-value=2.8 Score=43.17 Aligned_cols=153 Identities=14% Similarity=0.208 Sum_probs=92.3
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCC-chHHHHHHHHHHcCCCEEEe
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGP-SAFKEYVEDCKQVGFDTIEL 120 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~-~~~~~yl~~~k~lGF~~IEI 120 (289)
.+-+.|..+| ||.+=.||..+.-...+.+++..++-- .+..++. |. .+...+- ..-+.-++.+.+.|.+.|-+
T Consensus 31 ~ia~~L~~~G--vd~IEvG~p~as~~d~~~~~~i~~~~l-~~~~i~~--~~-~~~~~~i~~~~d~~~e~~~~~g~~~i~i 104 (524)
T PRK12344 31 RIARKLDELG--VDYIEGGWPGSNPKDTEFFKRAKELKL-KHAKLAA--FG-STRRAGVSAEEDPNLQALLDAGTPVVTI 104 (524)
T ss_pred HHHHHHHHcC--CCEEEEcCCcCChhHHHHHHHHHHhCC-CCcEEEE--Ee-eccccCCCcccHHHHHHHHhCCCCEEEE
Confidence 4556677788 899999996544333333333333110 1233322 11 1111110 01245567788999999999
Q ss_pred cCCcccCChh------------HHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHH
Q 022982 121 NVGSLEIPEE------------TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 188 (289)
Q Consensus 121 SdGti~i~~~------------~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I 188 (289)
...+-++-.+ .-.+.|+.+++.|++|. |+-.+- -| ++ ..|++.++
T Consensus 105 ~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~--~~~e~~-------~D----a~----------r~d~~~l~ 161 (524)
T PRK12344 105 FGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVI--FDAEHF-------FD----GY----------KANPEYAL 161 (524)
T ss_pred EECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEE--Eccccc-------cc----cc----------cCCHHHHH
Confidence 8765443222 22367888999888752 333100 01 00 11588889
Q ss_pred HHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 189 RRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 189 ~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
+.++...++||+.|. |.|..|-..+..+.++++.+
T Consensus 162 ~~~~~~~~~Gad~i~-----l~DTvG~~~P~~v~~li~~l 196 (524)
T PRK12344 162 ATLKAAAEAGADWVV-----LCDTNGGTLPHEVAEIVAEV 196 (524)
T ss_pred HHHHHHHhCCCCeEE-----EccCCCCcCHHHHHHHHHHH
Confidence 999999999999887 88899999988888887654
No 148
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=90.87 E-value=2.2 Score=43.48 Aligned_cols=96 Identities=17% Similarity=0.280 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 181 (289)
-++.|++.+.+.|++.|-|.+..-++ +.-.+.|+.+++.|+.|. ..+-. .. +| ..
T Consensus 96 vv~~fv~~A~~~Gvd~irif~~lnd~--~n~~~~i~~ak~~G~~v~--~~i~~---t~------------~p-~~----- 150 (467)
T PRK14041 96 VVELFVKKVAEYGLDIIRIFDALNDI--RNLEKSIEVAKKHGAHVQ--GAISY---TV------------SP-VH----- 150 (467)
T ss_pred hhHHHHHHHHHCCcCEEEEEEeCCHH--HHHHHHHHHHHHCCCEEE--EEEEe---cc------------CC-CC-----
Confidence 68899999999999999999877775 345568999999998654 33311 00 11 11
Q ss_pred ccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 182 ~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
+++.+++.+++-.++||+.|- |.|..|-..+..+.++++.+
T Consensus 151 -t~e~~~~~a~~l~~~Gad~I~-----i~Dt~G~l~P~~v~~Lv~~l 191 (467)
T PRK14041 151 -TLEYYLEFARELVDMGVDSIC-----IKDMAGLLTPKRAYELVKAL 191 (467)
T ss_pred -CHHHHHHHHHHHHHcCCCEEE-----ECCccCCcCHHHHHHHHHHH
Confidence 478889999999999999764 67888888888887777654
No 149
>PRK10812 putative DNAse; Provisional
Probab=90.86 E-value=7.5 Score=36.31 Aligned_cols=169 Identities=15% Similarity=0.176 Sum_probs=104.8
Q ss_pred CCCCceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccC--hhHHHHHHHHHHhCCceecC---C-cHH---
Q 022982 22 RRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMP--KPFIEEVVKRAHQHDVYVST---G-DWA--- 92 (289)
Q Consensus 22 R~~GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p--~~~l~eKI~l~~~~gV~v~~---G-tlf--- 92 (289)
+..|+..++.+|. .+...+..++.+..| +.+..+.|-+...- +..+.+..+++.+..| +.- | .+.
T Consensus 30 ~~~gv~~~~~~~~----~~~~~~~~~~l~~~~-~~v~~~~GiHP~~~~~~~~~~~l~~~~~~~~v-vaIGEiGLD~~~~~ 103 (265)
T PRK10812 30 AARDVKFCLAVAT----TLPGYRHMRDLVGER-DNVVFSCGVHPLNQDEPYDVEELRRLAAEEGV-VAMGETGLDYYYTP 103 (265)
T ss_pred HHcCCCEEEEeCC----CHHHHHHHHHHHhhC-CCeEEEEEeCCCCCCChhHHHHHHHHhcCCCE-EEEEeeecCcCCCC
Confidence 4669999999999 666888889988887 35777888776432 3445555555543333 222 3 232
Q ss_pred -HHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 022982 93 -EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (289)
Q Consensus 93 -E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~ 171 (289)
....++. -|+..++.++++|...+==+-+.. .+.++.+++.+... .-++-... .| +
T Consensus 104 ~~~~~Q~~--vf~~ql~lA~e~~~Pv~iH~r~a~-------~~~l~iL~~~~~~~--~~~v~H~f--sG---~------- 160 (265)
T PRK10812 104 ETKVRQQE--SFRHHIQIGRELNKPVIVHTRDAR-------ADTLAILREEKVTD--CGGVLHCF--TE---D------- 160 (265)
T ss_pred CCHHHHHH--HHHHHHHHHHHhCCCeEEEeeCch-------HHHHHHHHhhcCCC--CCEEEEee--cC---C-------
Confidence 1233444 799999999999988875444322 25556666544321 11221111 11 1
Q ss_pred ccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecCCch
Q 022982 172 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPR 241 (289)
Q Consensus 172 ~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklifEAP~k~ 241 (289)
.+++++.++.|.+.=+- |... .-+.+.+.++++.+|+++|+.|...|.
T Consensus 161 ----------------~~~a~~~~~~G~~is~~---g~~t---~~~~~~~~~~~~~ipldrlLlETD~P~ 208 (265)
T PRK10812 161 ----------------RETAGKLLDLGFYISFS---GIVT---FRNAEQLRDAARYVPLDRLLVETDSPY 208 (265)
T ss_pred ----------------HHHHHHHHHCCCEEEEC---eeee---cCccHHHHHHHHhCChhhEEEecCCCC
Confidence 56788888888765443 2211 124567888999999999999987653
No 150
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=90.84 E-value=2 Score=42.44 Aligned_cols=95 Identities=13% Similarity=0.138 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCCh----hHHHHHHHHHHHcCCc
Q 022982 70 PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPE----ETLLRYVRLVKSAGLK 145 (289)
Q Consensus 70 ~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~----~~r~~lI~~~~~~G~~ 145 (289)
+.+.+.|+-.++++|.+..+. ++....++.+.+.+.|.|.|.|+-.|.+-.+ .++..+++..++.+..
T Consensus 118 ~l~~~iv~~~~~~~V~v~vr~--------~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ip 189 (368)
T PRK08649 118 ELITERIAEIRDAGVIVAVSL--------SPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVP 189 (368)
T ss_pred HHHHHHHHHHHhCeEEEEEec--------CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCC
Confidence 444555555666666554332 3346889999999999999999766554221 1456677777775544
Q ss_pred ccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEecc
Q 022982 146 AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 146 v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
|+- |. +. + .+.+++.+++|||.|++ ++
T Consensus 190 VIa--G~------V~-----------t---------------~e~A~~l~~aGAD~V~V-G~ 216 (368)
T PRK08649 190 VIV--GG------CV-----------T---------------YTTALHLMRTGAAGVLV-GI 216 (368)
T ss_pred EEE--eC------CC-----------C---------------HHHHHHHHHcCCCEEEE-CC
Confidence 321 11 10 1 45677778899999999 66
No 151
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=90.66 E-value=1.7 Score=40.17 Aligned_cols=79 Identities=22% Similarity=0.334 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC--------ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEI--------PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVAR 173 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i--------~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~ 173 (289)
.+.+..+.+.+.|+|+|||+-++-.. ..+.-.++++.+++. . -+| +.+|-...
T Consensus 112 ~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~-~-~~p-v~vKl~~~---------------- 172 (289)
T cd02810 112 DYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAA-V-DIP-LLVKLSPY---------------- 172 (289)
T ss_pred HHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHc-c-CCC-EEEEeCCC----------------
Confidence 56666777788899999998775432 234556788888874 1 112 45553210
Q ss_pred CCCCccccccHHHHHHHHHHHHHccCcEEEEecc
Q 022982 174 APRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 174 ~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
+ +.++.++.++...++|||.|.+-.+
T Consensus 173 --~------~~~~~~~~a~~l~~~Gad~i~~~~~ 198 (289)
T cd02810 173 --F------DLEDIVELAKAAERAGADGLTAINT 198 (289)
T ss_pred --C------CHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 1 3667788999999999999999765
No 152
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=90.52 E-value=3.2 Score=39.06 Aligned_cols=87 Identities=22% Similarity=0.275 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC------------------ChhHH----HHHHHHHHHcCCcccceeeeecCCCCC
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEI------------------PEETL----LRYVRLVKSAGLKAKPKFAVMFNKSDI 159 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i------------------~~~~r----~~lI~~~~~~G~~v~~E~g~k~~~~ev 159 (289)
.+-+..+.|++.|||.|||.-+.--| +.+.| .++|+.+++. +..-.-+++|....+.
T Consensus 142 ~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~-~g~d~~i~vris~~~~ 220 (327)
T cd02803 142 DFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREA-VGPDFPVGVRLSADDF 220 (327)
T ss_pred HHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHH-cCCCceEEEEechhcc
Confidence 44555566777999999998752111 12344 3555666653 1011135555432110
Q ss_pred CCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEecc
Q 022982 160 PSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 160 g~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
.+..+ +.++.++.++..-++|+++|-+=++
T Consensus 221 ------------~~~g~------~~~e~~~la~~l~~~G~d~i~vs~g 250 (327)
T cd02803 221 ------------VPGGL------TLEEAIEIAKALEEAGVDALHVSGG 250 (327)
T ss_pred ------------CCCCC------CHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 00112 5788899999999999999988655
No 153
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=90.43 E-value=4.2 Score=41.53 Aligned_cols=142 Identities=13% Similarity=0.081 Sum_probs=101.2
Q ss_pred ccEEEecCccccccCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 022982 54 VDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 122 (289)
Q Consensus 54 ID~lKfg~GTs~l~p~-----------~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISd 122 (289)
.+.+-+-..||-++-+ +.+.+-+++++++|..|..+ .|.+..-+++-+.+.++.+.+.|-+.|-+.|
T Consensus 90 ~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~--~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~D 167 (494)
T TIGR00973 90 KFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFS--CEDAGRTEIPFLARIVEAAINAGATTINIPD 167 (494)
T ss_pred CCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE--cCCCCCCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 5666666666665532 33557888999999876655 3444455566788888999999999999999
Q ss_pred CcccCChhHHHHHHHHHHHcCCcc--cceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCc
Q 022982 123 GSLEIPEETLLRYVRLVKSAGLKA--KPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (289)
Q Consensus 123 Gti~i~~~~r~~lI~~~~~~G~~v--~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~ 200 (289)
-.--+.+++-.++|+.++++ +.- ...+++.+ -.|....+-.+...++|||+
T Consensus 168 TvG~~~P~~~~~~i~~l~~~-~~~~~~v~l~~H~--------------------------HND~GlAvANalaAv~aGa~ 220 (494)
T TIGR00973 168 TVGYALPAEYGNLIKGLREN-VPNIDKAILSVHC--------------------------HNDLGLAVANSLAAVQNGAR 220 (494)
T ss_pred CCCCCCHHHHHHHHHHHHHh-hccccCceEEEEe--------------------------CCCCChHHHHHHHHHHhCCC
Confidence 99999999999999999874 110 11244422 11233346777888999999
Q ss_pred EEEEecc--ccccCCCCccHHHHHHHHh
Q 022982 201 MIMIDSD--DVCKHADSLRADIIAKVIG 226 (289)
Q Consensus 201 ~ViiEar--GI~d~~G~~r~d~v~~ii~ 226 (289)
+ ||+- |+=+..||...+.+-..+.
T Consensus 221 ~--vd~tv~GlGERaGNa~le~vv~~L~ 246 (494)
T TIGR00973 221 Q--VECTINGIGERAGNAALEEVVMALK 246 (494)
T ss_pred E--EEEEeecccccccCccHHHHHHHHH
Confidence 5 5775 8888899988877665553
No 154
>PRK09389 (R)-citramalate synthase; Provisional
Probab=90.43 E-value=3.5 Score=42.07 Aligned_cols=150 Identities=17% Similarity=0.201 Sum_probs=105.4
Q ss_pred HHHHHHHhhcccccEEEecCccccccCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHH
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDC 110 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~-----------~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~ 110 (289)
.++..+++ | +|.+-+...+|-++-+ +.+.+-++.++++|..|..+ +|.+...+++-+.++++.+
T Consensus 78 di~~a~~~-g--~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~--~ed~~r~~~~~l~~~~~~~ 152 (488)
T PRK09389 78 DIDAALEC-D--VDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELS--GEDASRADLDFLKELYKAG 152 (488)
T ss_pred HHHHHHhC-C--cCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEE--EeeCCCCCHHHHHHHHHHH
Confidence 44444443 3 5778888888776422 34566678999999866542 1334444555677788888
Q ss_pred HHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHH
Q 022982 111 KQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRR 190 (289)
Q Consensus 111 k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~ 190 (289)
.+.|.+.|-+.|-.--+.+.+-.++|+.+++. +. ..+++.+ .. |...-+-.
T Consensus 153 ~~~Ga~~i~l~DTvG~~~P~~~~~lv~~l~~~-~~--v~l~~H~-HN-------------------------D~GlAvAN 203 (488)
T PRK09389 153 IEAGADRICFCDTVGILTPEKTYELFKRLSEL-VK--GPVSIHC-HN-------------------------DFGLAVAN 203 (488)
T ss_pred HhCCCCEEEEecCCCCcCHHHHHHHHHHHHhh-cC--CeEEEEe-cC-------------------------CccHHHHH
Confidence 99999999999999999999999999999874 22 2344432 11 23334677
Q ss_pred HHHHHHccCcEEEEecc--ccccCCCCccHHHHHHHHhc
Q 022982 191 AERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGR 227 (289)
Q Consensus 191 ~~~dLeAGA~~ViiEar--GI~d~~G~~r~d~v~~ii~~ 227 (289)
+...++|||++ ||+- |+=+..||...+.+-..+..
T Consensus 204 alaAv~aGa~~--Vd~Ti~GiGERaGNa~lE~lv~~L~~ 240 (488)
T PRK09389 204 TLAALAAGADQ--VHVTINGIGERAGNASLEEVVMALKH 240 (488)
T ss_pred HHHHHHcCCCE--EEEEcccccccccCccHHHHHHHHHh
Confidence 88899999996 6775 88899999998877666643
No 155
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=90.34 E-value=2 Score=38.84 Aligned_cols=103 Identities=21% Similarity=0.142 Sum_probs=64.1
Q ss_pred CceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceec--------------CCc
Q 022982 25 GVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS--------------TGD 90 (289)
Q Consensus 25 GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~--------------~Gt 90 (289)
++..+.+=|+ . ....++++++. | +|.+ ..|+..+.+++.+++..+.+++..|.++ +=+
T Consensus 71 ~~pv~~~GGI--~-s~~d~~~~l~~-G--~~~v--~ig~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~ 142 (243)
T cd04731 71 FIPLTVGGGI--R-SLEDARRLLRA-G--ADKV--SINSAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHG 142 (243)
T ss_pred CCCEEEeCCC--C-CHHHHHHHHHc-C--CceE--EECchhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcC
Confidence 3455555555 2 45566666663 2 5554 5678888888888888887765445433 212
Q ss_pred HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc----ccCChhHHHHHHHHHHHc
Q 022982 91 WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS----LEIPEETLLRYVRLVKSA 142 (289)
Q Consensus 91 lfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt----i~i~~~~r~~lI~~~~~~ 142 (289)
|.+. ......++.+.+.+.|++.|.+++=+ ..-+ ..++++++++.
T Consensus 143 ~~~~----~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~---~~~~i~~i~~~ 191 (243)
T cd04731 143 GRKP----TGLDAVEWAKEVEELGAGEILLTSMDRDGTKKGY---DLELIRAVSSA 191 (243)
T ss_pred Ccee----cCCCHHHHHHHHHHCCCCEEEEeccCCCCCCCCC---CHHHHHHHHhh
Confidence 4332 12356788899999999999996522 2222 24667777663
No 156
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=90.33 E-value=2.4 Score=43.31 Aligned_cols=98 Identities=17% Similarity=0.231 Sum_probs=74.9
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 180 (289)
+-++.|++.+.+.|+|.+-|-|..-+++. -...|+.+++.|..|..-+.... + |
T Consensus 105 dvv~~fv~~a~~~Gidi~Rifd~lnd~~n--~~~ai~~ak~~G~~~~~~i~yt~---------s--------p------- 158 (468)
T PRK12581 105 DIVDKFISLSAQNGIDVFRIFDALNDPRN--IQQALRAVKKTGKEAQLCIAYTT---------S--------P------- 158 (468)
T ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCHHH--HHHHHHHHHHcCCEEEEEEEEEe---------C--------C-------
Confidence 46889999999999999999997775544 45699999999987653333311 1 1
Q ss_pred cccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccC
Q 022982 181 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (289)
Q Consensus 181 ~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~ 229 (289)
.-|.+-+++.++.-.++||+.|- |.|..|-..+..+.++++.+-
T Consensus 159 ~~t~~y~~~~a~~l~~~Gad~I~-----IkDtaG~l~P~~v~~Lv~alk 202 (468)
T PRK12581 159 VHTLNYYLSLVKELVEMGADSIC-----IKDMAGILTPKAAKELVSGIK 202 (468)
T ss_pred cCcHHHHHHHHHHHHHcCCCEEE-----ECCCCCCcCHHHHHHHHHHHH
Confidence 01477889999999999999775 678888888888888887653
No 157
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=90.30 E-value=1.4 Score=41.03 Aligned_cols=73 Identities=32% Similarity=0.424 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc---------cCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccccccccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSL---------EIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti---------~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~ 171 (289)
.+.+..+.+++.|||+|||+=++- --+.+.-.++++.+++. ++ | +.+|...
T Consensus 103 ~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~---P-v~vKl~~--------------- 163 (296)
T cd04740 103 EFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDV---P-VIVKLTP--------------- 163 (296)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCC---C-EEEEeCC---------------
Confidence 556666777888999999975542 23445556788888875 22 2 4554311
Q ss_pred ccCCCCccccccHHHHHHHHHHHHHccCcEEEE
Q 022982 172 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 204 (289)
Q Consensus 172 ~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~Vii 204 (289)
+.++..+.++...++|||.|.+
T Consensus 164 -----------~~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 164 -----------NVTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred -----------CchhHHHHHHHHHHcCCCEEEE
Confidence 1234567778888999998876
No 158
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=90.26 E-value=4.2 Score=36.96 Aligned_cols=142 Identities=15% Similarity=0.255 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc------cCChhHHHHHHHHHHHcCCcccceeeee-cCCCCCCCccccccccccccC
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSL------EIPEETLLRYVRLVKSAGLKAKPKFAVM-FNKSDIPSDRDRAFGAYVARA 174 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti------~i~~~~r~~lI~~~~~~G~~v~~E~g~k-~~~~evg~~~d~~~~~~~~~~ 174 (289)
.+.+.++++.++||+.||+.-+.. .++.+...++.+.+++.|+++.. .+.- .+.+ ..|++
T Consensus 11 ~~~~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~ls~-h~p~~~nl~----s~d~~-------- 77 (273)
T smart00518 11 GLYKAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENNIDVSV-HAPYLINLA----SPDKE-------- 77 (273)
T ss_pred cHhHHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEE-ECCceecCC----CCCHH--------
Confidence 567788999999999999986555 47778888888999999987432 1110 0010 11111
Q ss_pred CCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHH-------HHHHHHhccCCCceEEec-C--------
Q 022982 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRAD-------IIAKVIGRLGLEKTMFEA-T-------- 238 (289)
Q Consensus 175 ~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d-------~v~~ii~~l~~eklifEA-P-------- 238 (289)
.+ ..+.+.+.+.++..-+.||..|.+.+ |-+.. .-+.+ .+.++++.-.--+|.+|. |
T Consensus 78 ~r----~~~~~~l~~~i~~A~~lGa~~vv~h~-g~~~~--~~~e~~~~~~~~~l~~l~~~~~gv~l~lEn~~~~~~~~~~ 150 (273)
T smart00518 78 KV----EKSIERLIDEIKRCEELGIKALVFHP-GSYLK--QSKEEALNRIIESLNEVIDETKGVVILLETTAGKGSQIGS 150 (273)
T ss_pred HH----HHHHHHHHHHHHHHHHcCCCEEEEcc-ccccC--CCHHHHHHHHHHHHHHHHhccCCcEEEEeccCCCCCccCC
Confidence 01 11245555566666677999999865 32221 11233 333444320112467785 1
Q ss_pred CchhHHHHHHHhC--CCcccccCCCCc
Q 022982 239 NPRTSEWFIRRYG--PKVNLFVDHSQV 263 (289)
Q Consensus 239 ~k~qQ~~~I~~fG--~~VNLgI~~~eV 263 (289)
.+.+-..+++..+ |+|.+.+|+.+.
T Consensus 151 ~~~~~~~ll~~v~~~~~~g~~lD~gH~ 177 (273)
T smart00518 151 TFEDLKEIIDLIKELDRIGVCIDTCHI 177 (273)
T ss_pred CHHHHHHHHHhcCCCCCeEEEEEccch
Confidence 3345778888887 467665655554
No 159
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=90.24 E-value=1 Score=41.25 Aligned_cols=144 Identities=15% Similarity=0.301 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc------cCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccC
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSL------EIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti------~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 174 (289)
.+++-++.++++||+.||++-+.. ..+.++..++.+.++++ |+.+.. .+.-. ..-. ..|++
T Consensus 11 ~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~-~~~~~-~~~~--~~~~~-------- 78 (279)
T cd00019 11 GLENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSV-HAPYL-INLA--SPDKE-------- 78 (279)
T ss_pred cHHHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEE-EcCce-eccC--CCCHH--------
Confidence 788999999999999999975433 12457777777777887 444321 11100 0000 00100
Q ss_pred CCCccccccHHHHHHHHHHHHHccCcEEEEecccccc--CCCCccH---HHHHHHHh---ccCCCceEEec---------
Q 022982 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK--HADSLRA---DIIAKVIG---RLGLEKTMFEA--------- 237 (289)
Q Consensus 175 ~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d--~~G~~r~---d~v~~ii~---~l~~eklifEA--------- 237 (289)
......+.+-+.++..-+.||.+|++-.- -+. ....... +.+.++++ ..|+ +|-+|-
T Consensus 79 ----~r~~~~~~~~~~i~~A~~lG~~~v~~~~g-~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi-~l~lEn~~~~~~~~~ 152 (279)
T cd00019 79 ----KREKSIERLKDEIERCEELGIRLLVFHPG-SYLGQSKEEGLKRVIEALNELIDKAETKGV-VIALETMAGQGNEIG 152 (279)
T ss_pred ----HHHHHHHHHHHHHHHHHHcCCCEEEECCC-CCCCCCHHHHHHHHHHHHHHHHHhccCCCC-EEEEeCCCCCCCCCC
Confidence 01123455566666666789999888432 111 1111112 33444443 2333 466664
Q ss_pred CCchhHHHHHHHhC--CCcccccCCCCc
Q 022982 238 TNPRTSEWFIRRYG--PKVNLFVDHSQV 263 (289)
Q Consensus 238 P~k~qQ~~~I~~fG--~~VNLgI~~~eV 263 (289)
+...+-..+|+..| |+|.+-.|+.+.
T Consensus 153 ~t~~~~~~li~~v~~~~~~g~~lD~~h~ 180 (279)
T cd00019 153 SSFEELKEIIDLIKEKPRVGVCIDTCHI 180 (279)
T ss_pred CCHHHHHHHHHhcCCCCCeEEEEEhhhH
Confidence 22344577999997 777665555554
No 160
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=90.22 E-value=1.8 Score=42.49 Aligned_cols=83 Identities=17% Similarity=0.245 Sum_probs=60.3
Q ss_pred HHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHH
Q 022982 108 EDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLL 187 (289)
Q Consensus 108 ~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~ 187 (289)
+.+++-|.++|-|-+|+ ..+...|+.+.+.|.-|.-.+|..-. + +..++.+-. .-...+...++
T Consensus 121 rl~~eaGa~aVKlEGg~-----~~~~~~I~~l~~~GIPV~gHiGLtPQ-s------~~~lGGykv----qGr~~~~a~~l 184 (332)
T PLN02424 121 RMLKEGGMDAVKLEGGS-----PSRVTAAKAIVEAGIAVMGHVGLTPQ-A------ISVLGGFRP----QGRTAESAVKV 184 (332)
T ss_pred HHHHHhCCcEEEECCCc-----HHHHHHHHHHHHcCCCEEEeecccce-e------ehhhcCccc----cCCCHHHHHHH
Confidence 44477899999999997 56789999999999999999998432 1 111111100 00001236789
Q ss_pred HHHHHHHHHccCcEEEEec
Q 022982 188 IRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 188 I~~~~~dLeAGA~~ViiEa 206 (289)
++.++..-+|||+.|.+|+
T Consensus 185 i~dA~ale~AGAf~ivLE~ 203 (332)
T PLN02424 185 VETALALQEAGCFAVVLEC 203 (332)
T ss_pred HHHHHHHHHcCCcEEEEcC
Confidence 9999999999999999998
No 161
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=90.15 E-value=4.5 Score=38.58 Aligned_cols=111 Identities=16% Similarity=0.156 Sum_probs=73.9
Q ss_pred chhHHHHHHHhhc-ccccEEEecCccccccChhHHHHHHHHHHhCCceecC--CcHHHHHHHh---CCchHHHHHHHHHH
Q 022982 39 SHNVLEDIFESMG-QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST--GDWAEHLIRN---GPSAFKEYVEDCKQ 112 (289)
Q Consensus 39 g~~~~~DlLe~ag-~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~--GtlfE~a~~q---g~~~~~~yl~~~k~ 112 (289)
.+.++.+.++.+. .-++-+=|.+|.....+.+.+.+.++..++++..+.. =+..|+.... | -..++-++.+|+
T Consensus 73 s~eei~~~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g-~~~~e~l~~Lk~ 151 (340)
T TIGR03699 73 SVEEILQKIEELVAYGGTQILLQGGVNPDLGLDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEG-LSLREVLERLKE 151 (340)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCC-CCHHHHHHHHHH
Confidence 4445444443222 2266777777877777888889999999987643332 2566664332 3 124899999999
Q ss_pred cCCCEEEe-----c-CCcc------cCChhHHHHHHHHHHHcCCccccee
Q 022982 113 VGFDTIEL-----N-VGSL------EIPEETLLRYVRLVKSAGLKAKPKF 150 (289)
Q Consensus 113 lGF~~IEI-----S-dGti------~i~~~~r~~lI~~~~~~G~~v~~E~ 150 (289)
.|++.+-- . +-+. ..+.+++.+.|+.+++.|+++.+-+
T Consensus 152 aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~ 201 (340)
T TIGR03699 152 AGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATM 201 (340)
T ss_pred cCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCcccee
Confidence 99987641 1 1111 3488899999999999999977643
No 162
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=90.05 E-value=1.6 Score=42.28 Aligned_cols=79 Identities=11% Similarity=0.093 Sum_probs=53.8
Q ss_pred hhHHHHHHHhhcccccEEEecCcccc------ccChhHHHHHHHHHHhC-C-----ceec----CCcHHHHHHHhCCchH
Q 022982 40 HNVLEDIFESMGQFVDGLKFSGGSHS------LMPKPFIEEVVKRAHQH-D-----VYVS----TGDWAEHLIRNGPSAF 103 (289)
Q Consensus 40 ~~~~~DlLe~ag~yID~lKfg~GTs~------l~p~~~l~eKI~l~~~~-g-----V~v~----~GtlfE~a~~qg~~~~ 103 (289)
...+..+++.+++|.|++=+-++|-. ...++.+.+.++-.++. + ++|. |+. .. +.+
T Consensus 156 ~~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~------~~--~~~ 227 (344)
T PRK05286 156 VDDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDL------SD--EEL 227 (344)
T ss_pred HHHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCC------CH--HHH
Confidence 45777888888889999888775543 33445566666666652 2 4333 330 01 146
Q ss_pred HHHHHHHHHcCCCEEEecCCccc
Q 022982 104 KEYVEDCKQVGFDTIELNVGSLE 126 (289)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~ 126 (289)
.+..+.|.+.|.|.|.+++++.+
T Consensus 228 ~~ia~~l~~~Gadgi~~~nt~~~ 250 (344)
T PRK05286 228 DDIADLALEHGIDGVIATNTTLS 250 (344)
T ss_pred HHHHHHHHHhCCcEEEEeCCccc
Confidence 77888889999999999999854
No 163
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=90.01 E-value=2.6 Score=37.55 Aligned_cols=108 Identities=17% Similarity=0.258 Sum_probs=63.3
Q ss_pred HHhhcccccEEEecCccccccChhHHHHHHHHHHhCC-ceecCCcHHHHHHHhCC-chHHHHHHHHHHcCCCEEEecCCc
Q 022982 47 FESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-VYVSTGDWAEHLIRNGP-SAFKEYVEDCKQVGFDTIELNVGS 124 (289)
Q Consensus 47 Le~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~g-V~v~~GtlfE~a~~qg~-~~~~~yl~~~k~lGF~~IEISdGt 124 (289)
+..+| ++.++ ++-.+ +.+.+.+.++..+++- .++.-+.++ ..+ ...+++++.|++.|.+.|.++++
T Consensus 22 ~~~~G-~ig~i----~~~~~-~~~~~~~~~~~i~~~~~~~~~v~~i~-----~~~~~~~~~~~~~~~~~g~d~v~l~~~- 89 (236)
T cd04730 22 VSNAG-GLGFI----GAGYL-TPEALRAEIRKIRALTDKPFGVNLLV-----PSSNPDFEALLEVALEEGVPVVSFSFG- 89 (236)
T ss_pred HHhCC-Ccccc----CCCCC-CHHHHHHHHHHHHHhcCCCeEEeEec-----CCCCcCHHHHHHHHHhCCCCEEEEcCC-
Confidence 33444 56665 22333 4455666677666542 211111111 111 26889999999999999999988
Q ss_pred ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEE
Q 022982 125 LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 204 (289)
Q Consensus 125 i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~Vii 204 (289)
.+ .++++.+++.++.+. .+-. + .+++++..++||++|++
T Consensus 90 --~~----~~~~~~~~~~~i~~i----~~v~---------------------------~----~~~~~~~~~~gad~i~~ 128 (236)
T cd04730 90 --PP----AEVVERLKAAGIKVI----PTVT---------------------------S----VEEARKAEAAGADALVA 128 (236)
T ss_pred --CC----HHHHHHHHHcCCEEE----EeCC---------------------------C----HHHHHHHHHcCCCEEEE
Confidence 22 346666776655432 2100 1 24456667899999999
Q ss_pred ecc
Q 022982 205 DSD 207 (289)
Q Consensus 205 Ear 207 (289)
.+.
T Consensus 129 ~~~ 131 (236)
T cd04730 129 QGA 131 (236)
T ss_pred eCc
Confidence 886
No 164
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=89.94 E-value=2.3 Score=40.46 Aligned_cols=134 Identities=19% Similarity=0.240 Sum_probs=77.8
Q ss_pred hhHHHHHHHhhccc-ccEEEec------------CccccccChhHHHHHHHHHHhC-CceecC---CcHHHHHHHhCCch
Q 022982 40 HNVLEDIFESMGQF-VDGLKFS------------GGSHSLMPKPFIEEVVKRAHQH-DVYVST---GDWAEHLIRNGPSA 102 (289)
Q Consensus 40 ~~~~~DlLe~ag~y-ID~lKfg------------~GTs~l~p~~~l~eKI~l~~~~-gV~v~~---GtlfE~a~~qg~~~ 102 (289)
+..+.+..+.+-++ .|.+=+- .|+..+-.++.+.+.++-.++. ++++.- +||-+ +...
T Consensus 74 ~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~-----~~~~ 148 (319)
T TIGR00737 74 PDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDD-----AHIN 148 (319)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCC-----Ccch
Confidence 34444444443333 5666553 3444555677888888877653 554432 34532 2124
Q ss_pred HHHHHHHHHHcCCCEEEecCCccc--CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 022982 103 FKEYVEDCKQVGFDTIELNVGSLE--IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (289)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~--i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 180 (289)
..++.+.+.+.|.+.|-|+..+.. .+..-..++++.+++. .. +|=++. ++
T Consensus 149 ~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~-~~-ipvi~n----------Gg---------------- 200 (319)
T TIGR00737 149 AVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQA-VR-IPVIGN----------GD---------------- 200 (319)
T ss_pred HHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHc-CC-CcEEEe----------CC----------------
Confidence 678889999999999999865432 2212235788888773 11 121111 11
Q ss_pred cccHHHHHHHHHHHH-HccCcEEEEecccccc
Q 022982 181 VEDVDLLIRRAERCL-EAGADMIMIDSDDVCK 211 (289)
Q Consensus 181 ~~~~~~~I~~~~~dL-eAGA~~ViiEarGI~d 211 (289)
+.|+ +.+.+.| +.|||.||+ ||+++.
T Consensus 201 I~~~----~da~~~l~~~gad~Vmi-gR~~l~ 227 (319)
T TIGR00737 201 IFSP----EDAKAMLETTGCDGVMI-GRGALG 227 (319)
T ss_pred CCCH----HHHHHHHHhhCCCEEEE-Chhhhh
Confidence 1123 4455556 579999999 888764
No 165
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=89.90 E-value=7.6 Score=36.63 Aligned_cols=137 Identities=20% Similarity=0.269 Sum_probs=80.8
Q ss_pred hcccccEEEecCccccccChhHHHHHHHHHHhCCc--eecCCc---HHHHHHHhCCchHHHHHHHHHHcCCC-EEEecCC
Q 022982 50 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV--YVSTGD---WAEHLIRNGPSAFKEYVEDCKQVGFD-TIELNVG 123 (289)
Q Consensus 50 ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV--~v~~Gt---lfE~a~~qg~~~~~~yl~~~k~lGF~-~IEISdG 123 (289)
+.+++|++|+|-++..=+| .|++- -+.|. .+..|+ +-|..-+ .+.++.-|-. .+=+--|
T Consensus 107 l~~~vd~~kIga~~~~n~~--LL~~~----a~~gkPV~lk~G~~~s~~e~~~A---------~e~i~~~Gn~~i~L~~rG 171 (266)
T PRK13398 107 VADYADMLQIGSRNMQNFE--LLKEV----GKTKKPILLKRGMSATLEEWLYA---------AEYIMSEGNENVVLCERG 171 (266)
T ss_pred HHHhCCEEEECcccccCHH--HHHHH----hcCCCcEEEeCCCCCCHHHHHHH---------HHHHHhcCCCeEEEEECC
Confidence 3478999999977654433 44443 34555 444573 3332211 2334555553 2223333
Q ss_pred cccC----ChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHcc
Q 022982 124 SLEI----PEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG 198 (289)
Q Consensus 124 ti~i----~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAG 198 (289)
+-+. +..--++.|..+++. ++ | +++- +...+| ..+.....+...+.+|
T Consensus 172 ~~t~~~Y~~~~vdl~~i~~lk~~~~~---p-V~~D-~sHs~G----------------------~~~~v~~~~~aAva~G 224 (266)
T PRK13398 172 IRTFETYTRNTLDLAAVAVIKELSHL---P-IIVD-PSHATG----------------------RRELVIPMAKAAIAAG 224 (266)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCC---C-EEEe-CCCccc----------------------chhhHHHHHHHHHHcC
Confidence 3111 334455677777764 32 2 5552 112222 1344577889999999
Q ss_pred CcEEEEecc-----ccccCCCCccHHHHHHHHhcc
Q 022982 199 ADMIMIDSD-----DVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 199 A~~ViiEar-----GI~d~~G~~r~d~v~~ii~~l 228 (289)
|+-+|||.- -+.|..-.+..+.+.++++.+
T Consensus 225 a~Gl~iE~H~~pd~a~~D~~~sl~p~~l~~l~~~i 259 (266)
T PRK13398 225 ADGLMIEVHPEPEKALSDARQTLNFEEMKELVDEL 259 (266)
T ss_pred CCEEEEeccCCccccCCchhhcCCHHHHHHHHHHH
Confidence 999999983 678999999999999998754
No 166
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=89.85 E-value=1.4 Score=42.28 Aligned_cols=117 Identities=24% Similarity=0.404 Sum_probs=85.0
Q ss_pred HHHHHHHHHhCCceec------CCc-HHHH-HHHhCCchHHHHHHHHHHcCC-CEEEecCCcccCChhHHHHHHHHHHHc
Q 022982 72 IEEVVKRAHQHDVYVS------TGD-WAEH-LIRNGPSAFKEYVEDCKQVGF-DTIELNVGSLEIPEETLLRYVRLVKSA 142 (289)
Q Consensus 72 l~eKI~l~~~~gV~v~------~Gt-lfE~-a~~qg~~~~~~yl~~~k~lGF-~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (289)
.++.++.+++.++.+. ||. +||. |+.-|. ... +++|. |+|=|.|.-+.+-- ...+.|+++++.
T Consensus 113 T~~~V~~~~~~~~~i~~TRKT~PglR~leKyAV~~GG-G~n------HR~gLsDavliKDNHia~~g-~i~~Av~~aR~~ 184 (280)
T COG0157 113 TARMVEALRGTNVRIADTRKTTPGLRLLEKYAVRAGG-GDN------HRFGLSDAVLIKDNHIAAAG-SITEAVRRARAA 184 (280)
T ss_pred HHHHHHHhhccCcEEEeccCCCccHHHHHHHHHHhcC-Ccc------ccCCCcceEEehhhHHHHhc-cHHHHHHHHHHh
Confidence 4567888899997553 573 6664 444441 222 45554 68889998888777 556899999886
Q ss_pred -CCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHH
Q 022982 143 -GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADII 221 (289)
Q Consensus 143 -G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v 221 (289)
+|.++=|+=+.+ .+++++.++||||.||. .|+..+.+
T Consensus 185 ~~~~~kIEVEves---------------------------------le~~~eAl~agaDiImL---------DNm~~e~~ 222 (280)
T COG0157 185 APFTKKIEVEVES---------------------------------LEEAEEALEAGADIIML---------DNMSPEEL 222 (280)
T ss_pred CCCCceEEEEcCC---------------------------------HHHHHHHHHcCCCEEEe---------cCCCHHHH
Confidence 666666666611 57888899999999999 47788888
Q ss_pred HHHHhccC-CCceEEecC
Q 022982 222 AKVIGRLG-LEKTMFEAT 238 (289)
Q Consensus 222 ~~ii~~l~-~eklifEAP 238 (289)
.+.++.++ ..+++-||.
T Consensus 223 ~~av~~l~~~~~~~lEaS 240 (280)
T COG0157 223 KEAVKLLGLAGRALLEAS 240 (280)
T ss_pred HHHHHHhccCCceEEEEe
Confidence 88887766 567888887
No 167
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=89.78 E-value=0.64 Score=43.78 Aligned_cols=77 Identities=22% Similarity=0.301 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCC----------hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIP----------EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~----------~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~ 171 (289)
...++++.+.+.|.|.|+||.|+..-+ ......+++.+++. +++ +..-+| .+.
T Consensus 229 e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~-------~~i--PVi~~G--------gi~ 291 (327)
T cd02803 229 EAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKA-------VKI--PVIAVG--------GIR 291 (327)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHH-------CCC--CEEEeC--------CCC
Confidence 456778888899999999999986432 23445677777763 211 111011 111
Q ss_pred ccCCCCccccccHHHHHHHHHHHHHc-cCcEEEEecccccc
Q 022982 172 ARAPRSTEYVEDVDLLIRRAERCLEA-GADMIMIDSDDVCK 211 (289)
Q Consensus 172 ~~~~~~~~~~~~~~~~I~~~~~dLeA-GA~~ViiEarGI~d 211 (289)
+ .+.+++.|++ |||.|.+ +|.++.
T Consensus 292 -----------t----~~~a~~~l~~g~aD~V~i-gR~~la 316 (327)
T cd02803 292 -----------D----PEVAEEILAEGKADLVAL-GRALLA 316 (327)
T ss_pred -----------C----HHHHHHHHHCCCCCeeee-cHHHHh
Confidence 1 4567777888 7999998 676543
No 168
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=89.69 E-value=13 Score=35.03 Aligned_cols=170 Identities=21% Similarity=0.244 Sum_probs=113.5
Q ss_pred CCCCCCceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCcccccc--C--hhHHHHHHHHHHh-CCceecC--C-cH
Q 022982 20 KPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLM--P--KPFIEEVVKRAHQ-HDVYVST--G-DW 91 (289)
Q Consensus 20 KPR~~GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~--p--~~~l~eKI~l~~~-~gV~v~~--G-tl 91 (289)
+-+..|++.+...|. .+..+...++.|..|= .+-.+.|.+... . ++.+.+..+++.+ ..|..-+ | .+
T Consensus 25 ~a~~~gv~~~~~~g~----~~~~~~~~~~la~~y~-~v~~~~G~HP~~~~~~~~~~~~~l~~~~~~~~~vvaIGEiGLDy 99 (256)
T COG0084 25 RAREAGVKKMVVVGT----DLEDFKRALELAEKYP-NVYAAVGVHPLDADEHSEEDLEELEQLAEHHPKVVAIGEIGLDY 99 (256)
T ss_pred HHHHcCCcEEEEeec----CHHHHHHHHHHHHhCC-CeEEEEeeCCCccccccHHHHHHHHHHHhcCCCeEEEEecccCc
Confidence 456779999999999 5558888888888886 888899988877 4 5567777777765 4443322 4 21
Q ss_pred -H----HHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccc
Q 022982 92 -A----EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRA 166 (289)
Q Consensus 92 -f----E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~ 166 (289)
. +.-.++- .|..+++.+++++...|==+-+ ....+++.+++.+. +--|+-...+ +
T Consensus 100 ~~~~~~~~~~Q~~--~F~~ql~lA~~~~lPviIH~R~-------A~~d~~~iL~~~~~---~~~gi~HcFs-----G--- 159 (256)
T COG0084 100 YWDKEPDKERQEE--VFEAQLELAKELNLPVIIHTRD-------AHEDTLEILKEEGA---PVGGVLHCFS-----G--- 159 (256)
T ss_pred cccccccHHHHHH--HHHHHHHHHHHcCCCEEEEccc-------cHHHHHHHHHhcCC---CCCEEEEccC-----C---
Confidence 1 3444555 7999999999999877654443 23356666666544 1223422221 1
Q ss_pred cccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecCCc
Q 022982 167 FGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNP 240 (289)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklifEAP~k 240 (289)
. ++++++.++.| .+|=+=+- |+..+ ...+.+++..+|+++|+.|..-|
T Consensus 160 --------------s------~e~a~~~~d~G-~yisisG~-itfk~----a~~~~ev~~~iPldrLL~ETDsP 207 (256)
T COG0084 160 --------------S------AEEARKLLDLG-FYISISGI-VTFKN----AEKLREVARELPLDRLLLETDAP 207 (256)
T ss_pred --------------C------HHHHHHHHHcC-eEEEECce-eecCC----cHHHHHHHHhCCHhHeEeccCCC
Confidence 1 68999999999 44433222 44443 34578899999999999996533
No 169
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=89.66 E-value=2.5 Score=37.65 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=17.8
Q ss_pred HHHHHHHHHccCcEEEEeccccccCC
Q 022982 188 IRRAERCLEAGADMIMIDSDDVCKHA 213 (289)
Q Consensus 188 I~~~~~dLeAGA~~ViiEarGI~d~~ 213 (289)
.+.+++.+++||+-|+|=+ .|++..
T Consensus 184 ~edi~~~~~~Ga~gvivGs-ai~~~~ 208 (217)
T cd00331 184 PEDVKRLAEAGADAVLIGE-SLMRAP 208 (217)
T ss_pred HHHHHHHHHcCCCEEEECH-HHcCCC
Confidence 3566777889999999844 366544
No 170
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=89.41 E-value=18 Score=33.69 Aligned_cols=176 Identities=14% Similarity=0.132 Sum_probs=104.4
Q ss_pred chhHHHHHHH-hhcccccEEEecCccc---------------ccc---ChhHHHHHHHHHHh--CCceecCC-cHHHHHH
Q 022982 39 SHNVLEDIFE-SMGQFVDGLKFSGGSH---------------SLM---PKPFIEEVVKRAHQ--HDVYVSTG-DWAEHLI 96 (289)
Q Consensus 39 g~~~~~DlLe-~ag~yID~lKfg~GTs---------------~l~---p~~~l~eKI~l~~~--~gV~v~~G-tlfE~a~ 96 (289)
.+..+.+++. ..-.-+|++=+|+=.| +|- .-+.+-+-++-.++ .++++. - +...-.+
T Consensus 22 ~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv-~m~Y~Npi~ 100 (256)
T TIGR00262 22 TLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIG-LLTYYNLIF 100 (256)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE-EEEeccHHh
Confidence 4445555444 3345699999997321 110 00122233444443 355544 3 5566666
Q ss_pred HhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCC
Q 022982 97 RNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (289)
Q Consensus 97 ~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~ 176 (289)
.. .+++|++.|++.|++.|=|=| +|.++..++++.++++|+.+.+=+.- .
T Consensus 101 ~~---G~e~f~~~~~~aGvdgviipD----lp~ee~~~~~~~~~~~gl~~i~lv~P---------------------~-- 150 (256)
T TIGR00262 101 RK---GVEEFYAKCKEVGVDGVLVAD----LPLEESGDLVEAAKKHGVKPIFLVAP---------------------N-- 150 (256)
T ss_pred hh---hHHHHHHHHHHcCCCEEEECC----CChHHHHHHHHHHHHCCCcEEEEECC---------------------C--
Confidence 66 489999999999999998875 57788899999999998875432222 0
Q ss_pred CccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHH---HHHhccCCCceEEecCCc-hhHHHHHHHhCC
Q 022982 177 STEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIA---KVIGRLGLEKTMFEATNP-RTSEWFIRRYGP 252 (289)
Q Consensus 177 ~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~---~ii~~l~~eklifEAP~k-~qQ~~~I~~fG~ 252 (289)
++.++++.+.+. ..|--++|- ..|++........++.+ ++-+..+ ..|+.+-=-+ ..|..-+..+|.
T Consensus 151 ------T~~eri~~i~~~-~~gfiy~vs-~~G~TG~~~~~~~~~~~~i~~lr~~~~-~pi~vgfGI~~~e~~~~~~~~GA 221 (256)
T TIGR00262 151 ------ADDERLKQIAEK-SQGFVYLVS-RAGVTGARNRAASALNELVKRLKAYSA-KPVLVGFGISKPEQVKQAIDAGA 221 (256)
T ss_pred ------CCHHHHHHHHHh-CCCCEEEEE-CCCCCCCcccCChhHHHHHHHHHhhcC-CCEEEeCCCCCHHHHHHHHHcCC
Confidence 133344444432 344555544 23777665555555333 2223223 2577776655 678888888888
Q ss_pred Cc
Q 022982 253 KV 254 (289)
Q Consensus 253 ~V 254 (289)
|.
T Consensus 222 Dg 223 (256)
T TIGR00262 222 DG 223 (256)
T ss_pred CE
Confidence 73
No 171
>PLN02321 2-isopropylmalate synthase
Probab=89.35 E-value=2.2 Score=45.08 Aligned_cols=141 Identities=12% Similarity=0.089 Sum_probs=99.5
Q ss_pred EEEecCccccccChh-----------HHHHHHHHHHhCCc-eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCC
Q 022982 56 GLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVG 123 (289)
Q Consensus 56 ~lKfg~GTs~l~p~~-----------~l~eKI~l~~~~gV-~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdG 123 (289)
.+-+-..||-++-+. .+++-+++++++|. .|..+ .|.+..-+++.+.++++.+.+.|.+.|=|.|-
T Consensus 185 ~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs--~EDa~rtd~d~l~~~~~~a~~aGa~~I~L~DT 262 (632)
T PLN02321 185 RIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFS--PEDAGRSDPEFLYRILGEVIKAGATTLNIPDT 262 (632)
T ss_pred EEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEe--cccCCCCCHHHHHHHHHHHHHcCCCEEEeccc
Confidence 355555666554322 36678889999987 34444 34444555668889999999999999999999
Q ss_pred cccCChhHHHHHHHHHHHcCCcc--cceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcE
Q 022982 124 SLEIPEETLLRYVRLVKSAGLKA--KPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 201 (289)
Q Consensus 124 ti~i~~~~r~~lI~~~~~~G~~v--~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ 201 (289)
.--+.+.+-.++|+.++++ +.. ...+++.+ -.|....+-.....++|||+.
T Consensus 263 vG~~~P~~v~~li~~l~~~-~~~~~~v~i~vH~--------------------------HND~GlAvANslaAv~AGA~~ 315 (632)
T PLN02321 263 VGYTLPSEFGQLIADIKAN-TPGIENVIISTHC--------------------------QNDLGLSTANTLAGAHAGARQ 315 (632)
T ss_pred ccCCCHHHHHHHHHHHHHh-cCCCCCceEEEEe--------------------------CCCCCHHHHHHHHHHHhCCCE
Confidence 9999999999999999874 111 11234432 123344467777789999998
Q ss_pred EEEecc--ccccCCCCccHHHHHHHHhc
Q 022982 202 IMIDSD--DVCKHADSLRADIIAKVIGR 227 (289)
Q Consensus 202 ViiEar--GI~d~~G~~r~d~v~~ii~~ 227 (289)
| |+- ||=+..||...+.+-..+..
T Consensus 316 V--d~TinGlGERaGNa~LEevv~~L~~ 341 (632)
T PLN02321 316 V--EVTINGIGERAGNASLEEVVMAIKC 341 (632)
T ss_pred E--EEecccccccccCccHHHHHHHHHh
Confidence 4 775 88899999998877766654
No 172
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=89.29 E-value=4.6 Score=38.15 Aligned_cols=58 Identities=14% Similarity=0.106 Sum_probs=40.3
Q ss_pred ccccccChhHHHHHHHHHHhC-CceecC-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc
Q 022982 62 GSHSLMPKPFIEEVVKRAHQH-DVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE 126 (289)
Q Consensus 62 GTs~l~p~~~l~eKI~l~~~~-gV~v~~-GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~ 126 (289)
|......++.+.+.++..++. ++++.- -+. +.+.+.++.+.|.+.|.+.|=++|-+..
T Consensus 146 G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~-------~~~~~~~~a~~~~~~Gadgi~~~Nt~~~ 205 (299)
T cd02940 146 GAAVGQDPELVEEICRWVREAVKIPVIAKLTP-------NITDIREIARAAKEGGADGVSAINTVNS 205 (299)
T ss_pred chhhccCHHHHHHHHHHHHHhcCCCeEEECCC-------CchhHHHHHHHHHHcCCCEEEEeccccc
Confidence 445557788899999888764 555443 111 1125778888899999999998886643
No 173
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=89.11 E-value=3.5 Score=38.16 Aligned_cols=140 Identities=23% Similarity=0.337 Sum_probs=87.8
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhC--CceecCCcHHHHHHHhCCchHHHHHHHHHHcC----C
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVG----F 115 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~--gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lG----F 115 (289)
.+-+.|..+| ||.+=+|+.. .-|.+. +.++.+++. ++.+. .| .+. -.+.++.+.+.| +
T Consensus 24 ~i~~~L~~~G--v~~iEvg~~~--~~~~~~--~~~~~l~~~~~~~~~~--~l-----~r~---~~~~v~~a~~~~~~~~~ 87 (268)
T cd07940 24 EIARQLDELG--VDVIEAGFPA--ASPGDF--EAVKRIAREVLNAEIC--GL-----ARA---VKKDIDAAAEALKPAKV 87 (268)
T ss_pred HHHHHHHHcC--CCEEEEeCCC--CCHHHH--HHHHHHHHhCCCCEEE--EE-----ccC---CHhhHHHHHHhCCCCCC
Confidence 4445566677 7788887533 233332 555555543 33222 11 121 133345555556 9
Q ss_pred CEEEecCCccc--------CCh----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccc
Q 022982 116 DTIELNVGSLE--------IPE----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (289)
Q Consensus 116 ~~IEISdGti~--------i~~----~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~ 183 (289)
+.|-+....-+ .+. +.-.+.|+.+++.|++|. |+..+. . ..|
T Consensus 88 ~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~--~~~~~~---------~---------------~~~ 141 (268)
T cd07940 88 DRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVE--FSAEDA---------T---------------RTD 141 (268)
T ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE--EeeecC---------C---------------CCC
Confidence 99999775422 222 344578899999998754 443221 0 015
Q ss_pred HHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 184 VDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 184 ~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
++.+.+.+++..++||+.| .|.|..|...++.+.++++.+
T Consensus 142 ~~~~~~~~~~~~~~G~~~i-----~l~DT~G~~~P~~v~~lv~~l 181 (268)
T cd07940 142 LDFLIEVVEAAIEAGATTI-----NIPDTVGYLTPEEFGELIKKL 181 (268)
T ss_pred HHHHHHHHHHHHHcCCCEE-----EECCCCCCCCHHHHHHHHHHH
Confidence 8888999999999999876 578999999999999888744
No 174
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=89.11 E-value=13 Score=33.00 Aligned_cols=124 Identities=16% Similarity=0.164 Sum_probs=78.4
Q ss_pred CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCc
Q 022982 83 DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSD 162 (289)
Q Consensus 83 gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~ 162 (289)
+|++-.+++ .. -...++.|.+.|.|.|=+..- .++.++-.++++.++..|+.+..++.-
T Consensus 72 ~iPi~~~~~-----i~----~~~~v~~~~~~Gad~v~l~~~--~~~~~~~~~~~~~~~~~g~~~~v~v~~---------- 130 (217)
T cd00331 72 SLPVLRKDF-----II----DPYQIYEARAAGADAVLLIVA--ALDDEQLKELYELARELGMEVLVEVHD---------- 130 (217)
T ss_pred CCCEEECCe-----ec----CHHHHHHHHHcCCCEEEEeec--cCCHHHHHHHHHHHHHcCCeEEEEECC----------
Confidence 777776551 11 124789999999999998544 455677778999998877776444421
Q ss_pred cccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCC-CceEEecCCch
Q 022982 163 RDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGL-EKTMFEATNPR 241 (289)
Q Consensus 163 ~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~-eklifEAP~k~ 241 (289)
.+++++.+++|+++|.+=++..... ....+.+.++.+.++. -.++-+.=-.+
T Consensus 131 -------------------------~~e~~~~~~~g~~~i~~t~~~~~~~--~~~~~~~~~l~~~~~~~~pvia~gGI~s 183 (217)
T cd00331 131 -------------------------EEELERALALGAKIIGINNRDLKTF--EVDLNTTERLAPLIPKDVILVSESGIST 183 (217)
T ss_pred -------------------------HHHHHHHHHcCCCEEEEeCCCcccc--CcCHHHHHHHHHhCCCCCEEEEEcCCCC
Confidence 2447778889999998776532211 2334667777766642 24555554433
Q ss_pred -hHHHHHHHhCCCc
Q 022982 242 -TSEWFIRRYGPKV 254 (289)
Q Consensus 242 -qQ~~~I~~fG~~V 254 (289)
.+..-+...|.+.
T Consensus 184 ~edi~~~~~~Ga~g 197 (217)
T cd00331 184 PEDVKRLAEAGADA 197 (217)
T ss_pred HHHHHHHHHcCCCE
Confidence 5555566666543
No 175
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=89.02 E-value=19 Score=33.51 Aligned_cols=167 Identities=17% Similarity=0.214 Sum_probs=102.9
Q ss_pred CCCCceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCcccccc----ChhHHHHHHHHHHhC--Cceec--CC-cHH
Q 022982 22 RRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLM----PKPFIEEVVKRAHQH--DVYVS--TG-DWA 92 (289)
Q Consensus 22 R~~GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~----p~~~l~eKI~l~~~~--gV~v~--~G-tlf 92 (289)
+..|++.++.+|. .++..+..++.+..|-. +..+.|-+.-. +.+.+.+..+++..+ .|.-- .| .++
T Consensus 29 ~~~gv~~~~~~~~----~~~~~~~~~~l~~~~~~-v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~~~~~aIGEiGLD~~ 103 (258)
T PRK11449 29 AQAGVGKIIVPAT----EAENFARVLALAERYQP-LYAALGLHPGMLEKHSDVSLDQLQQALERRPAKVVAVGEIGLDLF 103 (258)
T ss_pred HHCCCCEEEEeeC----CHHHHHHHHHHHHhCCC-EEEEEeeCcCccccCCHHHHHHHHHHHHhCCCCEEEEEecccCCC
Confidence 3669999999998 66688889999888864 66777776532 233455555455433 22111 13 222
Q ss_pred --H--HHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccc
Q 022982 93 --E--HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFG 168 (289)
Q Consensus 93 --E--~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~ 168 (289)
+ ...++. -|++.++.|++++...+==+-+ .. .++++.+++.+... -++=...+ +
T Consensus 104 ~~~~~~~~Q~~--vf~~ql~lA~~~~~Pv~iH~r~----a~---~~~~~il~~~~~~~---~~i~H~fs-----G----- 161 (258)
T PRK11449 104 GDDPQFERQQW--LLDEQLKLAKRYDLPVILHSRR----TH---DKLAMHLKRHDLPR---TGVVHGFS-----G----- 161 (258)
T ss_pred CCCCCHHHHHH--HHHHHHHHHHHhCCCEEEEecC----cc---HHHHHHHHhcCCCC---CeEEEcCC-----C-----
Confidence 1 122333 7999999999999998855554 22 24555566654321 12211111 1
Q ss_pred cccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccc-cccCCCCccHHHHHHHHhccCCCceEEecCCc
Q 022982 169 AYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDD-VCKHADSLRADIIAKVIGRLGLEKTMFEATNP 240 (289)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarG-I~d~~G~~r~d~v~~ii~~l~~eklifEAP~k 240 (289)
. .+++++.++.|.+. =+ -| ++.+ +.+.+.++++.+|+++|++|..-|
T Consensus 162 ------------~------~~~a~~~l~~G~~i-S~--~g~it~~----~~~~~~~~~~~ipldriL~ETD~P 209 (258)
T PRK11449 162 ------------S------LQQAERFVQLGYKI-GV--GGTITYP----RASKTRDVIAKLPLASLLLETDAP 209 (258)
T ss_pred ------------C------HHHHHHHHHCCCEE-Ee--Ccccccc----CcHHHHHHHHhCChhhEEEecCCC
Confidence 1 57888999999763 11 12 2222 335678899999999999998766
No 176
>PRK12999 pyruvate carboxylase; Reviewed
Probab=89.01 E-value=3.5 Score=46.31 Aligned_cols=102 Identities=20% Similarity=0.272 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 181 (289)
.+++|++.+.+.|+|.+-|.|..-++ +.....|+.+++.|..+...++.. .++ .|+ ... .
T Consensus 628 v~~~~i~~a~~~Gid~~rifd~lnd~--~~~~~~i~~vk~~g~~~~~~i~yt---g~~---~d~--------~~~----~ 687 (1146)
T PRK12999 628 VVRAFVREAAAAGIDVFRIFDSLNWV--ENMRVAIDAVRETGKIAEAAICYT---GDI---LDP--------ARA----K 687 (1146)
T ss_pred HHHHHHHHHHHcCCCEEEEeccCChH--HHHHHHHHHHHHcCCeEEEEEEEE---ecC---CCC--------CCC----C
Confidence 57789999999999999999988886 446678999999988655555542 110 121 110 1
Q ss_pred ccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 182 ~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
-|++.+++.++.-.++||+.|- |.|..|-..+..+.++++.+
T Consensus 688 ~~~~~~~~~a~~l~~~Ga~~i~-----ikDt~G~l~P~~~~~lv~~l 729 (1146)
T PRK12999 688 YDLDYYVDLAKELEKAGAHILA-----IKDMAGLLKPAAAYELVSAL 729 (1146)
T ss_pred CCHHHHHHHHHHHHHcCCCEEE-----ECCccCCCCHHHHHHHHHHH
Confidence 1688999999999999999664 67888888888887777654
No 177
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=88.91 E-value=4 Score=36.13 Aligned_cols=101 Identities=22% Similarity=0.255 Sum_probs=56.4
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcc-------------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccc
Q 022982 100 PSAFKEYVEDCKQVGFDTIELNVGSL-------------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRA 166 (289)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGti-------------~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~ 166 (289)
|+.+.+..+.+++.|||.|||+-|+- .=..+.-.++|+.+++. .. .-+.+|...+
T Consensus 66 ~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~-~~--~~v~vk~r~~--------- 133 (231)
T cd02801 66 PETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREA-VP--IPVTVKIRLG--------- 133 (231)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHh-cC--CCEEEEEeec---------
Confidence 34555666677888999999997651 12333345667777653 10 1244543211
Q ss_pred cccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEecccccc-CCCCccHHHHHHHHh
Q 022982 167 FGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK-HADSLRADIIAKVIG 226 (289)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d-~~G~~r~d~v~~ii~ 226 (289)
|. +.++.++.++..-++|+++|.+-++.-.. ..+....+.+.++.+
T Consensus 134 ---------~~-----~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~ 180 (231)
T cd02801 134 ---------WD-----DEEETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKE 180 (231)
T ss_pred ---------cC-----CchHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHh
Confidence 10 01355677777778999999997762111 122234455555544
No 178
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=88.89 E-value=2.8 Score=40.40 Aligned_cols=124 Identities=19% Similarity=0.258 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHhCCceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc-----------CChhHHHHH
Q 022982 70 PFIEEVVKRAHQHDVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE-----------IPEETLLRY 135 (289)
Q Consensus 70 ~~l~eKI~l~~~~gV~v~~---GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~-----------i~~~~r~~l 135 (289)
+.+..-=++...-+++|.- .||-| + . .+-+.++.+.+.|.-.|-|-|-... +|.++-++-
T Consensus 65 e~~~~vrrI~~a~~lPv~vD~dtGfG~-~--~---nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~r 138 (289)
T COG2513 65 EVLADARRITDAVDLPVLVDIDTGFGE-A--L---NVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDR 138 (289)
T ss_pred HHHHHHHHHHhhcCCceEEeccCCCCc-H--H---HHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHH
Confidence 3455555556666776664 25665 2 1 5678888999999999888776664 888888888
Q ss_pred HHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCC
Q 022982 136 VRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADS 215 (289)
Q Consensus 136 I~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~ 215 (289)
|+-+++. ...+.|-+-- .-|. + ...-.++.|++++..+|||||.|-+|+. .
T Consensus 139 IkAa~~a--~~~~~fvi~A-------RTda----------~---~~~~ld~AI~Ra~AY~eAGAD~if~~al------~- 189 (289)
T COG2513 139 IKAAVEA--RRDPDFVIIA-------RTDA----------L---LVEGLDDAIERAQAYVEAGADAIFPEAL------T- 189 (289)
T ss_pred HHHHHHh--ccCCCeEEEe-------ehHH----------H---HhccHHHHHHHHHHHHHcCCcEEccccC------C-
Confidence 8888874 2224555411 1111 1 1122688999999999999999999986 1
Q ss_pred ccHHHHHHHHhccC
Q 022982 216 LRADIIAKVIGRLG 229 (289)
Q Consensus 216 ~r~d~v~~ii~~l~ 229 (289)
..+.+.++.+.++
T Consensus 190 -~~e~i~~f~~av~ 202 (289)
T COG2513 190 -DLEEIRAFAEAVP 202 (289)
T ss_pred -CHHHHHHHHHhcC
Confidence 1555666666555
No 179
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=88.71 E-value=9.2 Score=37.70 Aligned_cols=136 Identities=15% Similarity=0.141 Sum_probs=85.6
Q ss_pred HHHHHHHHhCCceecC----C-c----HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHH----HHHHHH
Q 022982 73 EEVVKRAHQHDVYVST----G-D----WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLL----RYVRLV 139 (289)
Q Consensus 73 ~eKI~l~~~~gV~v~~----G-t----lfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~----~lI~~~ 139 (289)
.--..+++++.|+|+. | + |||.++.- +.+++..|.+.||+.|=+..-. +|.++=. ++++++
T Consensus 77 ~~v~~~A~~~~VPValHLDHg~~~~~~~~~~~~~a----~~~~~~~a~~~GftSVMiDgS~--lp~eENI~~TkevVe~A 150 (345)
T cd00946 77 HHVRSMAEHYGVPVVLHTDHCAKKLLPWFDGLLEA----DEEYFKQHGEPLFSSHMLDLSE--EPLEENIEICKKYLERM 150 (345)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCccchhhHHHHHH----HHHHHHHhccCCCceEEeeCCC--CCHHHHHHHHHHHHHHH
Confidence 3334688899998874 5 4 68888765 4689999999999999775443 5555433 566777
Q ss_pred HHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHH-ccCcEEEEe---cccccc-CCC
Q 022982 140 KSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLE-AGADMIMID---SDDVCK-HAD 214 (289)
Q Consensus 140 ~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLe-AGA~~ViiE---arGI~d-~~G 214 (289)
+..|.-|--|+|.--+ .+|..- ....+. ....-||++..+.+++--. -|.|.+=+= +-|+|. ..-
T Consensus 151 h~~gvsVEaElG~igg------~ed~~~-~~~~~~---~~~yTdPeeA~~Fv~~t~~~tgvD~LAvaiGt~HG~Y~~~~p 220 (345)
T cd00946 151 AKINMWLEMEIGITGG------EEDGVD-NSGVDN---AELYTQPEDVWYVYEALSKISPNFSIAAAFGNVHGVYKPGNV 220 (345)
T ss_pred HHcCCEEEEEecccCC------cccCcc-cccccc---cccCCCHHHHHHHHHHhccCCCceeeeeeccccccCCCCCCC
Confidence 8889999999998321 112100 000000 0001257666666553211 277755332 239998 477
Q ss_pred CccHHHHHHH
Q 022982 215 SLRADIIAKV 224 (289)
Q Consensus 215 ~~r~d~v~~i 224 (289)
+++-+.+++|
T Consensus 221 ~L~~~~L~~I 230 (345)
T cd00946 221 KLQPEILGEH 230 (345)
T ss_pred ccCHHHHHHH
Confidence 8999999999
No 180
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=88.70 E-value=6.8 Score=38.47 Aligned_cols=124 Identities=13% Similarity=0.179 Sum_probs=82.0
Q ss_pred ccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCcc-----
Q 022982 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSL----- 125 (289)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti----- 125 (289)
.-|+-+=||+||..+++.+.|++.++.++++= +..+. .|+.+.-+|+. -++.++.++++||+.|.|---|.
T Consensus 72 ~~i~siy~GGGTPs~L~~~~L~~ll~~i~~~~-~~~~~--~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L 148 (394)
T PRK08898 72 RQVHTVFIGGGTPSLLSAAGLDRLLSDVRALL-PLDPD--AEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHL 148 (394)
T ss_pred CceeEEEECCCCcCCCCHHHHHHHHHHHHHhC-CCCCC--CeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHH
Confidence 45888999999999999999999999998751 11111 23333333333 25789999999999988855444
Q ss_pred -----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCc
Q 022982 126 -----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (289)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~ 200 (289)
.-+.++-.+.|+.+++.+..|- +....+. |.+ +.+.+.+.++..++.+.+
T Consensus 149 ~~l~R~~~~~~~~~~i~~~~~~~~~v~--~dlI~Gl----------------Pgq-------t~~~~~~~l~~~~~l~p~ 203 (394)
T PRK08898 149 KALGRIHDGAEARAAIEIAAKHFDNFN--LDLMYAL----------------PGQ-------TLDEALADVETALAFGPP 203 (394)
T ss_pred HHhCCCCCHHHHHHHHHHHHHhCCceE--EEEEcCC----------------CCC-------CHHHHHHHHHHHHhcCCC
Confidence 1234555567887777533221 2222221 111 477888889999999998
Q ss_pred EEE
Q 022982 201 MIM 203 (289)
Q Consensus 201 ~Vi 203 (289)
+|-
T Consensus 204 ~is 206 (394)
T PRK08898 204 HLS 206 (394)
T ss_pred EEE
Confidence 763
No 181
>PRK09389 (R)-citramalate synthase; Provisional
Probab=88.67 E-value=8.1 Score=39.47 Aligned_cols=143 Identities=22% Similarity=0.303 Sum_probs=91.9
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (289)
.+-+.|..+| ||.+=.||=.+.-.+.+.+++..++. .+..++. |. + ...+-++.+.+.|.+.|-+.
T Consensus 28 ~ia~~L~~~G--v~~IE~G~p~~~~~d~e~v~~i~~~~--~~~~i~a--~~-----r---~~~~di~~a~~~g~~~v~i~ 93 (488)
T PRK09389 28 EIARKLDELG--VDVIEAGSAITSEGEREAIKAVTDEG--LNAEICS--FA-----R---AVKVDIDAALECDVDSVHLV 93 (488)
T ss_pred HHHHHHHHcC--CCEEEEeCCcCCHHHHHHHHHHHhcC--CCcEEEe--ec-----c---cCHHHHHHHHhCCcCEEEEE
Confidence 4556677777 89999997554433334444433321 1223322 21 2 12344778888999999998
Q ss_pred CCcccCC--------h----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHH
Q 022982 122 VGSLEIP--------E----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (289)
Q Consensus 122 dGti~i~--------~----~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~ 189 (289)
..+-++- . +.-.+.|+.+++.|++| +|...+. + -.|++.+++
T Consensus 94 ~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v--~~~~ed~-~-----------------------r~~~~~l~~ 147 (488)
T PRK09389 94 VPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIV--ELSGEDA-S-----------------------RADLDFLKE 147 (488)
T ss_pred EccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEE--EEEEeeC-C-----------------------CCCHHHHHH
Confidence 8765542 2 23345678888888764 3444221 0 015888899
Q ss_pred HHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccC
Q 022982 190 RAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (289)
Q Consensus 190 ~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~ 229 (289)
.++...++||+.|. |+|..|-..+..+.+++..+-
T Consensus 148 ~~~~~~~~Ga~~i~-----l~DTvG~~~P~~~~~lv~~l~ 182 (488)
T PRK09389 148 LYKAGIEAGADRIC-----FCDTVGILTPEKTYELFKRLS 182 (488)
T ss_pred HHHHHHhCCCCEEE-----EecCCCCcCHHHHHHHHHHHH
Confidence 99999999999874 689999999988888887653
No 182
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=88.64 E-value=3.9 Score=42.97 Aligned_cols=97 Identities=15% Similarity=0.202 Sum_probs=76.1
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 180 (289)
+-++.|++.+.+.|+|.+-|-|..-+++.-.. .|+.+++.|..+..-+-.. . ++
T Consensus 96 ~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~--~i~~~k~~G~~~~~~i~yt--~-------sp--------------- 149 (596)
T PRK14042 96 DVVRAFVKLAVNNGVDVFRVFDALNDARNLKV--AIDAIKSHKKHAQGAICYT--T-------SP--------------- 149 (596)
T ss_pred HHHHHHHHHHHHcCCCEEEEcccCcchHHHHH--HHHHHHHcCCEEEEEEEec--C-------CC---------------
Confidence 46888999999999999999998888877765 8999999998765543231 0 11
Q ss_pred cccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 181 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 181 ~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
.-|++.+++.++.-.++||+.|- |.|..|-..+..+.+++..+
T Consensus 150 ~~t~e~~~~~ak~l~~~Gad~I~-----IkDtaG~l~P~~v~~lv~al 192 (596)
T PRK14042 150 VHTLDNFLELGKKLAEMGCDSIA-----IKDMAGLLTPTVTVELYAGL 192 (596)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEE-----eCCcccCCCHHHHHHHHHHH
Confidence 11588999999999999998764 67888888888887777654
No 183
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=88.58 E-value=3.1 Score=39.94 Aligned_cols=80 Identities=18% Similarity=0.245 Sum_probs=56.1
Q ss_pred EEecCccccccChhHHHHHHHHHHhC-Cceec--C-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc-C--Ch
Q 022982 57 LKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVS--T-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE-I--PE 129 (289)
Q Consensus 57 lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~--~-GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~-i--~~ 129 (289)
.|-|.|++++-+++.+++.++-.++. ++++. . .||-+ ......++.+.+.+.|.+.|.|...+.+ + ..
T Consensus 106 ~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~-----~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~ 180 (321)
T PRK10415 106 NRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAP-----EHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGE 180 (321)
T ss_pred cCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccC-----CcchHHHHHHHHHHhCCCEEEEecCccccccCCC
Confidence 56677888899999999999988764 44443 2 35533 1125678888899999999999987642 1 12
Q ss_pred hHHHHHHHHHHHc
Q 022982 130 ETLLRYVRLVKSA 142 (289)
Q Consensus 130 ~~r~~lI~~~~~~ 142 (289)
.+ .++|++++++
T Consensus 181 a~-~~~i~~ik~~ 192 (321)
T PRK10415 181 AE-YDSIRAVKQK 192 (321)
T ss_pred cC-hHHHHHHHHh
Confidence 33 3788888873
No 184
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=88.40 E-value=13 Score=35.25 Aligned_cols=109 Identities=14% Similarity=0.192 Sum_probs=72.6
Q ss_pred chhHHHHHHHhhcc-cccEEEecCccccccChhHHHHHHHHHHhCCc--eecCCcHHHHHHHh---CCchHHHHHHHHHH
Q 022982 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV--YVSTGDWAEHLIRN---GPSAFKEYVEDCKQ 112 (289)
Q Consensus 39 g~~~~~DlLe~ag~-yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV--~v~~GtlfE~a~~q---g~~~~~~yl~~~k~ 112 (289)
.+..+.+.++.+-+ =++-+-|..|.....+.+.+.+.++..+++.. .++.=+-.|+.+.- | -..++.++..|+
T Consensus 37 s~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~~i~~~~~s~~e~~~~~~~~g-~~~~e~l~~Lke 115 (309)
T TIGR00423 37 SLEEILEKVKEAVAKGATEVCIQGGLNPQLDIEYYEELFRAIKQEFPDVHIHAFSPMEVYFLAKNEG-LSIEEVLKRLKK 115 (309)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcC-CCHHHHHHHHHH
Confidence 44454444443222 24566666777666777889999999998853 33323566765322 2 135899999999
Q ss_pred cCCCEE-EecCCcc-----------cCChhHHHHHHHHHHHcCCcccc
Q 022982 113 VGFDTI-ELNVGSL-----------EIPEETLLRYVRLVKSAGLKAKP 148 (289)
Q Consensus 113 lGF~~I-EISdGti-----------~i~~~~r~~lI~~~~~~G~~v~~ 148 (289)
.|.+.+ .++.-+. ..+.++|.+.|+.+++.|+++.+
T Consensus 116 AGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~s 163 (309)
T TIGR00423 116 AGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTTA 163 (309)
T ss_pred cCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCcee
Confidence 999977 2321111 35788999999999999988775
No 185
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=88.39 E-value=3.5 Score=36.73 Aligned_cols=97 Identities=15% Similarity=0.175 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCC-hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIP-EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~-~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 180 (289)
..-++.+..++.|++.+-|.|=+-... ...-..+|+++++.=. +| +-+. + ...
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~~--~p-v~~~---------G-----gI~--------- 83 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAVG--IP-VQVG---------G-----GIR--------- 83 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHhcC--CC-EEEe---------C-----CcC---------
Confidence 455666777789999999997654432 4444678888877310 01 2220 0 111
Q ss_pred cccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEe
Q 022982 181 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFE 236 (289)
Q Consensus 181 ~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklifE 236 (289)
+ .+.+++.+++||+.|++=.. ..+ ..+.+.++++.++.+++++=
T Consensus 84 --~----~e~~~~~~~~Gad~vvigs~-~l~-----dp~~~~~i~~~~g~~~i~~s 127 (234)
T cd04732 84 --S----LEDIERLLDLGVSRVIIGTA-AVK-----NPELVKELLKEYGGERIVVG 127 (234)
T ss_pred --C----HHHHHHHHHcCCCEEEECch-HHh-----ChHHHHHHHHHcCCceEEEE
Confidence 1 56778888899999998443 332 25677778877776666554
No 186
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=88.18 E-value=2.9 Score=37.34 Aligned_cols=97 Identities=21% Similarity=0.286 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHh-CCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCC-cccC---ChhHHHHHHHHHHHc-C
Q 022982 70 PFIEEVVKRAHQ-HDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVG-SLEI---PEETLLRYVRLVKSA-G 143 (289)
Q Consensus 70 ~~l~eKI~l~~~-~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdG-ti~i---~~~~r~~lI~~~~~~-G 143 (289)
+.+++.++.+|+ .++.+.++.- ..++ ...+.+.|+|+|-++.+ .... .......+++.+++. +
T Consensus 105 ~~~~~~i~~~~~~~~i~vi~~v~----------t~ee-~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~ 173 (221)
T PRK01130 105 ETLAELVKRIKEYPGQLLMADCS----------TLEE-GLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVG 173 (221)
T ss_pred CCHHHHHHHHHhCCCCeEEEeCC----------CHHH-HHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCC
Confidence 568899999999 8888776521 1122 24578899999977532 2111 112224567777664 4
Q ss_pred CcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEecccccc
Q 022982 144 LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK 211 (289)
Q Consensus 144 ~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d 211 (289)
..|....|++. .+.+++.+++||+-|++=+ .|++
T Consensus 174 iPvia~GGI~t---------------------------------~~~~~~~l~~GadgV~iGs-ai~~ 207 (221)
T PRK01130 174 CPVIAEGRINT---------------------------------PEQAKKALELGAHAVVVGG-AITR 207 (221)
T ss_pred CCEEEECCCCC---------------------------------HHHHHHHHHCCCCEEEEch-HhcC
Confidence 55555555521 3667778899999999853 3554
No 187
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=88.17 E-value=2.1 Score=38.85 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=35.3
Q ss_pred HHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 022982 95 LIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (289)
Q Consensus 95 a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (289)
++.+. .+++.++.+++.||+.||+.. ...+ +..++-+.+++.|+++..
T Consensus 11 ~~~~~--~l~~~l~~~a~~Gf~~VEl~~-~~~~---~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 11 LFGEY--DFLARFEKAAQCGFRGVEFMF-PYDY---DIEELKQVLASNKLEHTL 58 (258)
T ss_pred hccCC--CHHHHHHHHHHhCCCEEEEcC-CCCC---CHHHHHHHHHHcCCcEEE
Confidence 44555 799999999999999999954 2222 445666677899999743
No 188
>PRK12999 pyruvate carboxylase; Reviewed
Probab=88.01 E-value=5 Score=45.18 Aligned_cols=159 Identities=9% Similarity=0.084 Sum_probs=108.0
Q ss_pred chhHHHHHHHhh-cccccEEEecCccccccChhHHHHHHHHHHhCCc--ee--c-CCcHHHHHHH--hCCchHHHHHHHH
Q 022982 39 SHNVLEDIFESM-GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV--YV--S-TGDWAEHLIR--NGPSAFKEYVEDC 110 (289)
Q Consensus 39 g~~~~~DlLe~a-g~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV--~v--~-~GtlfE~a~~--qg~~~~~~yl~~~ 110 (289)
+-.-.+++++.| ..-||++-+.-...- -+.++.-|+.++++|- .+ | +|..+ -+.. ..++.+-++.+++
T Consensus 625 p~~v~~~~i~~a~~~Gid~~rifd~lnd---~~~~~~~i~~vk~~g~~~~~~i~ytg~~~-d~~~~~~~~~~~~~~a~~l 700 (1146)
T PRK12999 625 PDNVVRAFVREAAAAGIDVFRIFDSLNW---VENMRVAIDAVRETGKIAEAAICYTGDIL-DPARAKYDLDYYVDLAKEL 700 (1146)
T ss_pred CchHHHHHHHHHHHcCCCEEEEeccCCh---HHHHHHHHHHHHHcCCeEEEEEEEEecCC-CCCCCCCCHHHHHHHHHHH
Confidence 344667766654 455999998864444 4579999999999993 22 2 24322 1111 2333556667778
Q ss_pred HHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHH
Q 022982 111 KQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRR 190 (289)
Q Consensus 111 k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~ 190 (289)
.++|.+.|=|.|-.--+.+..-.++|+.++++ +.+ .++... .. |...-+-.
T Consensus 701 ~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~-~~i--pi~~H~-Hn-------------------------t~Gla~an 751 (1146)
T PRK12999 701 EKAGAHILAIKDMAGLLKPAAAYELVSALKEE-VDL--PIHLHT-HD-------------------------TSGNGLAT 751 (1146)
T ss_pred HHcCCCEEEECCccCCCCHHHHHHHHHHHHHH-cCC--eEEEEe-CC-------------------------CCchHHHH
Confidence 88999999999999999999999999999984 111 233322 11 12233667
Q ss_pred HHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCC
Q 022982 191 AERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGL 230 (289)
Q Consensus 191 ~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~ 230 (289)
.-..++|||+.|=+=-.|+-...||...+.+-..++..+.
T Consensus 752 ~laA~~aGad~vD~av~glg~~tgn~~le~vv~~L~~~~~ 791 (1146)
T PRK12999 752 YLAAAEAGVDIVDVAVASMSGLTSQPSLNSIVAALEGTER 791 (1146)
T ss_pred HHHHHHhCCCEEEecchhhcCCcCCHHHHHHHHHHHhcCC
Confidence 7789999999765555688888888888777666665543
No 189
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=87.85 E-value=2.4 Score=39.36 Aligned_cols=128 Identities=21% Similarity=0.328 Sum_probs=78.7
Q ss_pred hhHHHHHHHHHHhCCceecC-C--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc------ccCChhHHHHHHHHH
Q 022982 69 KPFIEEVVKRAHQHDVYVST-G--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS------LEIPEETLLRYVRLV 139 (289)
Q Consensus 69 ~~~l~eKI~l~~~~gV~v~~-G--tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt------i~i~~~~r~~lI~~~ 139 (289)
.+.+..-=++++.-++++.- + ||-. .|..+.+-++...+.|.-.|-|-|.- --+|.++.+.=|+.+
T Consensus 55 ~e~~~~~~~I~~~~~iPv~vD~d~GyG~-----~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa 129 (238)
T PF13714_consen 55 TEMLAAVRRIARAVSIPVIVDADTGYGN-----DPENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAA 129 (238)
T ss_dssp HHHHHHHHHHHHHSSSEEEEE-TTTSSS-----SHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcCcEEEEcccccCc-----hhHHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHH
Confidence 34444445566777888875 2 4422 12356667778889999999999881 135888888888877
Q ss_pred HHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHH
Q 022982 140 KSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRAD 219 (289)
Q Consensus 140 ~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d 219 (289)
++.-= .+.|-+ .. .-|. +.. .....++.|++++...+||||.|.+++- ...+
T Consensus 130 ~~a~~--~~~~~I---~A----RTDa----~~~-------~~~~~deaI~R~~aY~eAGAD~ifi~~~--------~~~~ 181 (238)
T PF13714_consen 130 VDARR--DPDFVI---IA----RTDA----FLR-------AEEGLDEAIERAKAYAEAGADMIFIPGL--------QSEE 181 (238)
T ss_dssp HHHHS--STTSEE---EE----EECH----HCH-------HHHHHHHHHHHHHHHHHTT-SEEEETTS--------SSHH
T ss_pred HHhcc--CCeEEE---EE----eccc----ccc-------CCCCHHHHHHHHHHHHHcCCCEEEeCCC--------CCHH
Confidence 76300 011222 00 1111 000 0124799999999999999999999975 3466
Q ss_pred HHHHHHhccC
Q 022982 220 IIAKVIGRLG 229 (289)
Q Consensus 220 ~v~~ii~~l~ 229 (289)
.++++.+.++
T Consensus 182 ~i~~~~~~~~ 191 (238)
T PF13714_consen 182 EIERIVKAVD 191 (238)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHhcC
Confidence 6888888887
No 190
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=87.84 E-value=9.2 Score=37.10 Aligned_cols=116 Identities=22% Similarity=0.273 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhCCceec-----CCcHHHH--------------------HHHhC--CchHHHHHH---HHHHcCCCEEEe
Q 022982 71 FIEEVVKRAHQHDVYVS-----TGDWAEH--------------------LIRNG--PSAFKEYVE---DCKQVGFDTIEL 120 (289)
Q Consensus 71 ~l~eKI~l~~~~gV~v~-----~GtlfE~--------------------a~~qg--~~~~~~yl~---~~k~lGF~~IEI 120 (289)
.+++.++.+|+||-.++ +|-+.+. +++.. ..-+++|.+ .|++.|||.|||
T Consensus 82 ~~r~l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVei 161 (337)
T PRK13523 82 GLHKLVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAKEAGFDVIEI 161 (337)
T ss_pred HHHHHHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 67889999999997653 2322210 00000 012444544 566779999999
Q ss_pred cCCc---------ccC---------ChhHHHHHH----HHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCc
Q 022982 121 NVGS---------LEI---------PEETLLRYV----RLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (289)
Q Consensus 121 SdGt---------i~i---------~~~~r~~lI----~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~ 178 (289)
.-|- --. +.+.|.|++ +.+++. +-.-+++|....+. ..
T Consensus 162 h~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~---~~~~v~vRis~~d~-----------------~~ 221 (337)
T PRK13523 162 HGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEV---WDGPLFVRISASDY-----------------HP 221 (337)
T ss_pred ccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHh---cCCCeEEEeccccc-----------------CC
Confidence 8772 111 345566544 444443 11125666533221 11
Q ss_pred cccccHHHHHHHHHHHHHccCcEEEEecc
Q 022982 179 EYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 179 ~~~~~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
.|. ++++.++.++..-++|+|+|-|=++
T Consensus 222 ~G~-~~~e~~~i~~~l~~~gvD~i~vs~g 249 (337)
T PRK13523 222 GGL-TVQDYVQYAKWMKEQGVDLIDVSSG 249 (337)
T ss_pred CCC-CHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 122 4788888888888899999998554
No 191
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=87.84 E-value=2.2 Score=40.07 Aligned_cols=74 Identities=27% Similarity=0.341 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHcC-CCEEEecCCccc---------CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 022982 102 AFKEYVEDCKQVG-FDTIELNVGSLE---------IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (289)
Q Consensus 102 ~~~~yl~~~k~lG-F~~IEISdGti~---------i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~ 171 (289)
.+.+..+.+++.| ||+|||+-++-. -..+.-.++|+.+++.- -+| +.+|-..
T Consensus 105 ~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~--~~p-v~vKl~~--------------- 166 (301)
T PRK07259 105 EYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV--KVP-VIVKLTP--------------- 166 (301)
T ss_pred HHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc--CCC-EEEEcCC---------------
Confidence 5666677778889 999999653322 23466678888888752 122 4554310
Q ss_pred ccCCCCccccccHHHHHHHHHHHHHccCcEEEE
Q 022982 172 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 204 (289)
Q Consensus 172 ~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~Vii 204 (289)
+.++.++.++...++||+.|.+
T Consensus 167 -----------~~~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 167 -----------NVTDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred -----------CchhHHHHHHHHHHcCCCEEEE
Confidence 2345577778888999998876
No 192
>PRK08508 biotin synthase; Provisional
Probab=87.78 E-value=11 Score=35.25 Aligned_cols=98 Identities=16% Similarity=0.144 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHhC--Ccee--cCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc---------cCChhHHHHHH
Q 022982 70 PFIEEVVKRAHQH--DVYV--STGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL---------EIPEETLLRYV 136 (289)
Q Consensus 70 ~~l~eKI~l~~~~--gV~v--~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti---------~i~~~~r~~lI 136 (289)
+.+.+-++..|++ ++.+ +.|-. -++-++..|+.|++.+-++..|- .-+.+++.+.|
T Consensus 75 e~~~ei~~~ik~~~p~l~i~~s~G~~-----------~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i 143 (279)
T PRK08508 75 EYVAEAAKAVKKEVPGLHLIACNGTA-----------SVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTC 143 (279)
T ss_pred HHHHHHHHHHHhhCCCcEEEecCCCC-----------CHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHH
Confidence 4566777777776 4544 32322 36777888999999887654332 24457888899
Q ss_pred HHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEE
Q 022982 137 RLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 204 (289)
Q Consensus 137 ~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~Vii 204 (289)
+.+++.|+++.+ |.-.+.. ++.+++++.+..--+-+.+.|-+
T Consensus 144 ~~a~~~Gi~v~s--g~I~GlG------------------------Et~ed~~~~l~~lr~L~~~svpl 185 (279)
T PRK08508 144 ENAKEAGLGLCS--GGIFGLG------------------------ESWEDRISFLKSLASLSPHSTPI 185 (279)
T ss_pred HHHHHcCCeecc--eeEEecC------------------------CCHHHHHHHHHHHHcCCCCEEee
Confidence 999999998777 3333321 14777888887777888886654
No 193
>PRK05926 hypothetical protein; Provisional
Probab=87.58 E-value=15 Score=36.13 Aligned_cols=119 Identities=15% Similarity=0.221 Sum_probs=80.7
Q ss_pred EecCccccccChhHHHHHHHHHHhC--CceecCCcHHHHHHHhCC--chHHHHHHHHHHcCCCEE-----EecCCcc---
Q 022982 58 KFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNGP--SAFKEYVEDCKQVGFDTI-----ELNVGSL--- 125 (289)
Q Consensus 58 Kfg~GTs~l~p~~~l~eKI~l~~~~--gV~v~~GtlfE~a~~qg~--~~~~~yl~~~k~lGF~~I-----EISdGti--- 125 (289)
=+-.|-..-.+-+.+.+.++..+++ ++.++.=+-.|+++.... -..++.++..|+.|++.+ |+.+-++
T Consensus 119 ~iv~G~~p~~~~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~~~~~~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~ 198 (370)
T PRK05926 119 HIVAGCFPSCNLAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKLDNLPVKEVLQTLKIAGLDSIPGGGAEILVDEIRET 198 (370)
T ss_pred EEEeCcCCCCCHHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhhcCCCHHHHHHHHHHcCcCccCCCCchhcCHHHHHh
Confidence 3334665556667888888888876 677664455677765431 246899999999999764 3333333
Q ss_pred ----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcE
Q 022982 126 ----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 201 (289)
Q Consensus 126 ----~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ 201 (289)
..+.++|.+.++.+++.|+++-+= .-++.. ++++++++.+..--+-+.+.
T Consensus 199 ~~p~~~t~~e~l~~i~~a~~~Gi~~~sg--mi~G~g------------------------Et~edrv~~l~~Lr~Lq~~t 252 (370)
T PRK05926 199 LAPGRLSSQGFLEIHKTAHSLGIPSNAT--MLCYHR------------------------ETPEDIVTHMSKLRALQDKT 252 (370)
T ss_pred hCCCCCCHHHHHHHHHHHHHcCCcccCc--eEEeCC------------------------CCHHHHHHHHHHHHhcCCcc
Confidence 346799999999999999997773 322221 24778888877766666654
Q ss_pred E
Q 022982 202 I 202 (289)
Q Consensus 202 V 202 (289)
+
T Consensus 253 ~ 253 (370)
T PRK05926 253 S 253 (370)
T ss_pred C
Confidence 3
No 194
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=87.57 E-value=3.7 Score=34.71 Aligned_cols=148 Identities=18% Similarity=0.234 Sum_probs=82.8
Q ss_pred HHHHHHcCCCEEEecCCcccCCh---hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccc
Q 022982 107 VEDCKQVGFDTIELNVGSLEIPE---ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (289)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~---~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~ 183 (289)
|+.++++||+.||++-....... ++..++.+.+++.|+++..--...+.........++ ..+ ....
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~-----~~~------r~~~ 69 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSA-----NDE------REEA 69 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTS-----SSH------HHHH
T ss_pred ChHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEecccccccccccccCc-----chh------hHHH
Confidence 57899999999999987765554 577789999999999955533222211100000000 000 0011
Q ss_pred HHHHHHHHHHHHHccCcEEEEeccc--cccCCCC--cc---H---HHHHHHHhccCCCceEEecCC------c---hhHH
Q 022982 184 VDLLIRRAERCLEAGADMIMIDSDD--VCKHADS--LR---A---DIIAKVIGRLGLEKTMFEATN------P---RTSE 244 (289)
Q Consensus 184 ~~~~I~~~~~dLeAGA~~ViiEarG--I~d~~G~--~r---~---d~v~~ii~~l~~eklifEAP~------k---~qQ~ 244 (289)
.+.+.+.++..=+.|+.+|++-+-. ....... .. . ..+.+++++.|+ ++.+|--. . .+..
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv-~i~lE~~~~~~~~~~~~~~~~~ 148 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGV-RIALENHPGPFSETPFSVEEIY 148 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTS-EEEEE-SSSSSSSEESSHHHHH
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcc-eEEEecccCccccchhhHHHHH
Confidence 4444555555556799999998541 1111110 00 1 222333344453 47777432 2 5678
Q ss_pred HHHHHhC-CCcccccCCCCchhh
Q 022982 245 WFIRRYG-PKVNLFVDHSQVMDL 266 (289)
Q Consensus 245 ~~I~~fG-~~VNLgI~~~eVl~L 266 (289)
++++.++ |+|++.++..+...-
T Consensus 149 ~~l~~~~~~~~~i~~D~~h~~~~ 171 (213)
T PF01261_consen 149 RLLEEVDSPNVGICFDTGHLIMA 171 (213)
T ss_dssp HHHHHHTTTTEEEEEEHHHHHHT
T ss_pred HHHhhcCCCcceEEEehHHHHHc
Confidence 9999999 567776766665543
No 195
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=87.56 E-value=5.2 Score=36.54 Aligned_cols=94 Identities=9% Similarity=0.056 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccc
Q 022982 70 PFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAK 147 (289)
Q Consensus 70 ~~l~eKI~l~~~~gV~v~~G--tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~ 147 (289)
..-.+-++.|++++|.+.|| |.-|+. .+.++|++.|-+-+..... -..+|+.++. ++
T Consensus 95 ~~~~~vi~~a~~~~i~~iPG~~TptEi~-------------~a~~~Ga~~vKlFPa~~~g----g~~~lk~l~~----p~ 153 (212)
T PRK05718 95 GLTPPLLKAAQEGPIPLIPGVSTPSELM-------------LGMELGLRTFKFFPAEASG----GVKMLKALAG----PF 153 (212)
T ss_pred CCCHHHHHHHHHcCCCEeCCCCCHHHHH-------------HHHHCCCCEEEEccchhcc----CHHHHHHHhc----cC
Confidence 33457777888888888887 567733 3478999999995433221 1356666665 23
Q ss_pred ceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCC
Q 022982 148 PKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHA 213 (289)
Q Consensus 148 ~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~ 213 (289)
|.+... -+| + ++ .+.+...|++|+..+.. +.-+++.+
T Consensus 154 p~~~~~----ptG--G-------V~---------------~~ni~~~l~ag~v~~vg-gs~L~~~~ 190 (212)
T PRK05718 154 PDVRFC----PTG--G-------IS---------------PANYRDYLALPNVLCIG-GSWMVPKD 190 (212)
T ss_pred CCCeEE----EeC--C-------CC---------------HHHHHHHHhCCCEEEEE-ChHhCCcc
Confidence 433221 111 0 11 47889999999666666 66677543
No 196
>PRK06801 hypothetical protein; Provisional
Probab=87.46 E-value=22 Score=33.95 Aligned_cols=174 Identities=16% Similarity=0.211 Sum_probs=96.9
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceec----CCc--------HHHHHH--HhC--------
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS----TGD--------WAEHLI--RNG-------- 99 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~----~Gt--------lfE~a~--~qg-------- 99 (289)
.++++|..|-+- +++-|.+-+++-+.++.-|+-+.+.+.++. +|+ +...+. ++.
T Consensus 5 ~~~~~l~~A~~~----~yaV~Afn~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~lH 80 (286)
T PRK06801 5 SLANGLAHARKH----GYALGAFNVLDSHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHDIPVVLN 80 (286)
T ss_pred cHHHHHHHHHHC----CceEEEEeeCCHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 455555544321 455666666666666666666666665432 121 111110 000
Q ss_pred --CchHHHHHHHHHHcCCCEEEecCCcccCChhHHH----HHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccc
Q 022982 100 --PSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLL----RYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVAR 173 (289)
Q Consensus 100 --~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~----~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~ 173 (289)
-...-+.++.|-+.||+.|=+ ||+- +|.++-. ++.+.++..|.-|--|+|. +|..++.. ...+
T Consensus 81 lDH~~~~e~i~~Ai~~GftSVm~-D~S~-l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~------vgg~e~~v---~~~~ 149 (286)
T PRK06801 81 LDHGLHFEAVVRALRLGFSSVMF-DGST-LEYEENVRQTREVVKMCHAVGVSVEAELGA------VGGDEGGA---LYGE 149 (286)
T ss_pred CCCCCCHHHHHHHHHhCCcEEEE-cCCC-CCHHHHHHHHHHHHHHHHHcCCeEEeecCc------ccCCCCCc---ccCC
Confidence 012346677888999999999 4443 4555544 4566677888887778877 22122210 0000
Q ss_pred CCCCccccccHHHHHHHHHHHHHccCcEEEEecc----ccccCCCCccHHHHHHHHhccCCCceEEe
Q 022982 174 APRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD----DVCKHADSLRADIIAKVIGRLGLEKTMFE 236 (289)
Q Consensus 174 ~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar----GI~d~~G~~r~d~v~~ii~~l~~eklifE 236 (289)
.. .....+|++..+.++ +.|+|++=+ += |.|+..-.++-+.+.+|-+.++.--++-=
T Consensus 150 ~~--~~~~T~pe~a~~f~~---~tgvD~LAv-aiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVlHG 210 (286)
T PRK06801 150 AD--SAKFTDPQLARDFVD---RTGIDALAV-AIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVLHG 210 (286)
T ss_pred cc--cccCCCHHHHHHHHH---HHCcCEEEe-ccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEC
Confidence 00 000114554444443 579999999 63 78987667999999999887654334333
No 197
>PRK15452 putative protease; Provisional
Probab=87.38 E-value=9.1 Score=38.76 Aligned_cols=88 Identities=10% Similarity=0.002 Sum_probs=59.9
Q ss_pred chhHHHHHHHhhcccccEEEecCcccc------ccChhHHHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHH
Q 022982 39 SHNVLEDIFESMGQFVDGLKFSGGSHS------LMPKPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDC 110 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GTs~------l~p~~~l~eKI~l~~~~gV~v~~G--tlfE~a~~qg~~~~~~yl~~~ 110 (289)
.+..++..++.- .|-+=+|+.... -+..+.|++-++++|++|+++|.- ++..-- ... .+.+|++.+
T Consensus 12 ~~e~l~aAi~~G---ADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~-el~--~~~~~l~~l 85 (443)
T PRK15452 12 TLKNMRYAFAYG---ADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNA-KLK--TFIRDLEPV 85 (443)
T ss_pred CHHHHHHHHHCC---CCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHH-HHH--HHHHHHHHH
Confidence 566777777654 455555543222 344567999999999999988753 332211 112 688889999
Q ss_pred HHcCCCEEEecCCcccCChhHHHHHHHHHHHc
Q 022982 111 KQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (289)
Q Consensus 111 k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (289)
.++|+|+|=|+| ..+++.+++.
T Consensus 86 ~~~gvDgvIV~d----------~G~l~~~ke~ 107 (443)
T PRK15452 86 IAMKPDALIMSD----------PGLIMMVREH 107 (443)
T ss_pred HhCCCCEEEEcC----------HHHHHHHHHh
Confidence 999999999998 3566677765
No 198
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=87.37 E-value=9.5 Score=35.93 Aligned_cols=106 Identities=10% Similarity=0.156 Sum_probs=69.1
Q ss_pred chhHHHHHHHhh-cccccEEEecCccc-cccChhHHHHH--------------HHHH----HhCCceecCCcHHHHHHHh
Q 022982 39 SHNVLEDIFESM-GQFVDGLKFSGGSH-SLMPKPFIEEV--------------VKRA----HQHDVYVSTGDWAEHLIRN 98 (289)
Q Consensus 39 g~~~~~DlLe~a-g~yID~lKfg~GTs-~l~p~~~l~eK--------------I~l~----~~~gV~v~~GtlfE~a~~q 98 (289)
.++.+.+++... -.-+|++=+|+=.| .+.+-..+++- .+++ +++++++..=|++...+..
T Consensus 27 ~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~ 106 (263)
T CHL00200 27 DIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTYYNPVLHY 106 (263)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHh
Confidence 445566644433 34599999997443 12222222222 2222 2245544333677777777
Q ss_pred CCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceee
Q 022982 99 GPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFA 151 (289)
Q Consensus 99 g~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g 151 (289)
| +++|++.|++.|+|.|=|= ++|.++..++++.++++|+.+.+=+.
T Consensus 107 G---~e~F~~~~~~aGvdgviip----DLP~ee~~~~~~~~~~~gi~~I~lv~ 152 (263)
T CHL00200 107 G---INKFIKKISQAGVKGLIIP----DLPYEESDYLISVCNLYNIELILLIA 152 (263)
T ss_pred C---HHHHHHHHHHcCCeEEEec----CCCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 5 9999999999999999774 57889999999999999988665443
No 199
>PRK04302 triosephosphate isomerase; Provisional
Probab=87.37 E-value=5.8 Score=35.79 Aligned_cols=116 Identities=11% Similarity=0.088 Sum_probs=73.1
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 022982 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (289)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 182 (289)
-+.+.+.++++|.++|-+-+.--.++.++-.++++.+++.|+.++-+++-
T Consensus 74 g~~~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~~I~~v~~------------------------------ 123 (223)
T PRK04302 74 GHILPEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLESVVCVNN------------------------------ 123 (223)
T ss_pred hhhHHHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCeEEEEcCC------------------------------
Confidence 34568999999999999988766688888889999999999987742221
Q ss_pred cHHHHHHHHHHHHHccCcEEEEecccccc---CCCCccHHHHHHHHhccC----CCceEEecCC-chhHHHHHHHhCCC
Q 022982 183 DVDLLIRRAERCLEAGADMIMIDSDDVCK---HADSLRADIIAKVIGRLG----LEKTMFEATN-PRTSEWFIRRYGPK 253 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAGA~~ViiEarGI~d---~~G~~r~d~v~~ii~~l~----~eklifEAP~-k~qQ~~~I~~fG~~ 253 (289)
.+++++-.+.|.+.|=+|.+++.. .......+.++++++.+. --.++-+.-- ...+...+..-|.+
T Consensus 124 -----~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gad 197 (223)
T PRK04302 124 -----PETSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGAD 197 (223)
T ss_pred -----HHHHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCC
Confidence 123334456788999999875321 111123444554433332 1245555542 44555555556655
No 200
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=87.33 E-value=7.4 Score=36.41 Aligned_cols=95 Identities=13% Similarity=0.162 Sum_probs=60.1
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 022982 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (289)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 182 (289)
++.-+..++++|-+.|-.=.=--.=..++...+-+.+.++||..-|--|+
T Consensus 137 vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGI------------------------------ 186 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGI------------------------------ 186 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCc------------------------------
Confidence 66777777777777766432111123445555556666666653332222
Q ss_pred cHHHHHHHHHHHHHccCcEEEEecc-ccc-cCCCCccHHHHHHHHhc
Q 022982 183 DVDLLIRRAERCLEAGADMIMIDSD-DVC-KHADSLRADIIAKVIGR 227 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAGA~~ViiEar-GI~-d~~G~~r~d~v~~ii~~ 227 (289)
|.+..-+-.+-+|+||+.+||=-== .|. ...|+-|.+.+.+|+..
T Consensus 187 dl~Nf~~I~~i~ldaGv~kviPHIYssiIDk~tG~TrpedV~~l~~~ 233 (236)
T TIGR03581 187 DLDNFEEIVQIALDAGVEKVIPHVYSSIIDKETGNTRVEDVKQLLAI 233 (236)
T ss_pred cHHhHHHHHHHHHHcCCCeeccccceeccccccCCCCHHHHHHHHHH
Confidence 4666677788899999999984332 244 44699999999988864
No 201
>PLN02591 tryptophan synthase
Probab=87.15 E-value=1.8 Score=40.47 Aligned_cols=105 Identities=10% Similarity=0.134 Sum_probs=69.2
Q ss_pred chhHHHHHHH-hhcccccEEEecCcccc-ccChhHHH--------------HHHHHHHh----CCceecCCcHHHHHHHh
Q 022982 39 SHNVLEDIFE-SMGQFVDGLKFSGGSHS-LMPKPFIE--------------EVVKRAHQ----HDVYVSTGDWAEHLIRN 98 (289)
Q Consensus 39 g~~~~~DlLe-~ag~yID~lKfg~GTs~-l~p~~~l~--------------eKI~l~~~----~gV~v~~GtlfE~a~~q 98 (289)
.+..+.+++. ..-..+|++=+|+=.|= +.+-..++ +-.++.++ +++++..=|++-..+..
T Consensus 14 ~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~ 93 (250)
T PLN02591 14 DLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTYYNPILKR 93 (250)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHh
Confidence 3445555444 33456999999974431 11111111 22333322 44543333677777766
Q ss_pred CCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccccee
Q 022982 99 GPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 150 (289)
Q Consensus 99 g~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~ 150 (289)
.+++|++.|++.|.+.+=|- +||.++..++++.++++|+...+=+
T Consensus 94 ---G~~~F~~~~~~aGv~Gviip----DLP~ee~~~~~~~~~~~gl~~I~lv 138 (250)
T PLN02591 94 ---GIDKFMATIKEAGVHGLVVP----DLPLEETEALRAEAAKNGIELVLLT 138 (250)
T ss_pred ---HHHHHHHHHHHcCCCEEEeC----CCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 49999999999999999887 5889999999999999999876644
No 202
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=87.12 E-value=3.9 Score=38.28 Aligned_cols=110 Identities=12% Similarity=0.071 Sum_probs=71.7
Q ss_pred CCchHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCC
Q 022982 99 GPSAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (289)
Q Consensus 99 g~~~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~ 175 (289)
+.+.+.++++++.+.|.+.|=+.-.| ..|+.++|.++++.+.+.-=+|. +|+ |
T Consensus 18 D~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~~vi--~gv-------g--------------- 73 (279)
T cd00953 18 DKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITDKVI--FQV-------G--------------- 73 (279)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcCCEE--EEe-------C---------------
Confidence 34578899999999999999886543 58999999999998887421111 222 1
Q ss_pred CCccccccHHHHHHHHHHHHHccCcEEEEeccccccC-CCCccHHHHHHHHhccCCCceEEecCC
Q 022982 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKH-ADSLRADIIAKVIGRLGLEKTMFEATN 239 (289)
Q Consensus 176 ~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~-~G~~r~d~v~~ii~~l~~eklifEAP~ 239 (289)
..++++.|++++..-++|||.|++=.--.+.. +-+--.+-...|++ ++.=++...|.
T Consensus 74 -----~~~~~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~--~lpv~iYn~P~ 131 (279)
T cd00953 74 -----SLNLEESIELARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISS--PYPTFIYNYPK 131 (279)
T ss_pred -----cCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCCHHHHHHHHHHHHh--cCCEEEEeCcc
Confidence 01378889999999999999999855432221 11111222233444 55556666663
No 203
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=87.06 E-value=2.5 Score=38.63 Aligned_cols=116 Identities=16% Similarity=0.157 Sum_probs=71.0
Q ss_pred HHHHHHHhCCc-eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeee
Q 022982 74 EVVKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV 152 (289)
Q Consensus 74 eKI~l~~~~gV-~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~ 152 (289)
+-++...+++| .|.-|.=.| ..-+..+.+.+.|+++|||. +......+.|+.+++.. |++-+
T Consensus 7 ~~~~~l~~~~~iaV~r~~~~~--------~a~~i~~al~~~Gi~~iEit-----l~~~~~~~~I~~l~~~~----p~~~I 69 (212)
T PRK05718 7 SIEEILRAGPVVPVIVINKLE--------DAVPLAKALVAGGLPVLEVT-----LRTPAALEAIRLIAKEV----PEALI 69 (212)
T ss_pred HHHHHHHHCCEEEEEEcCCHH--------HHHHHHHHHHHcCCCEEEEe-----cCCccHHHHHHHHHHHC----CCCEE
Confidence 34456677887 444453333 33455678889999999998 55567889999998731 22222
Q ss_pred ecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEecc-----------ccccCCCCccHHHH
Q 022982 153 MFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-----------DVCKHADSLRADII 221 (289)
Q Consensus 153 k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-----------GI~d~~G~~r~d~v 221 (289)
| -+ ..+ | .++++..++|||++++.=+= ++--==|-....++
T Consensus 70 -------G--AG----TVl-----------~----~~~a~~a~~aGA~FivsP~~~~~vi~~a~~~~i~~iPG~~TptEi 121 (212)
T PRK05718 70 -------G--AG----TVL-----------N----PEQLAQAIEAGAQFIVSPGLTPPLLKAAQEGPIPLIPGVSTPSEL 121 (212)
T ss_pred -------E--Ee----ecc-----------C----HHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEeCCCCCHHHH
Confidence 1 01 111 1 38899999999999997652 21111255555555
Q ss_pred HHHHhccCCCceEE
Q 022982 222 AKVIGRLGLEKTMF 235 (289)
Q Consensus 222 ~~ii~~l~~eklif 235 (289)
.+.. +.|.+-+-+
T Consensus 122 ~~a~-~~Ga~~vKl 134 (212)
T PRK05718 122 MLGM-ELGLRTFKF 134 (212)
T ss_pred HHHH-HCCCCEEEE
Confidence 5543 477665555
No 204
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=86.95 E-value=6.6 Score=36.95 Aligned_cols=110 Identities=17% Similarity=0.252 Sum_probs=79.7
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHH
Q 022982 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (289)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (289)
+.+++.+|-|+|=+--.. ++.++..++++.+.+.||.|+-|++-
T Consensus 117 I~ea~~~GADavLLI~~~--L~~~~l~~l~~~a~~lGle~LVEVh~---------------------------------- 160 (247)
T PRK13957 117 IREARAFGASAILLIVRI--LTPSQIKSFLKHASSLGMDVLVEVHT---------------------------------- 160 (247)
T ss_pred HHHHHHcCCCEEEeEHhh--CCHHHHHHHHHHHHHcCCceEEEECC----------------------------------
Confidence 567788999999665544 46778889999999999999999876
Q ss_pred HHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCce-EEecCCc-hhHHHHHHHhCCCccc
Q 022982 187 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKT-MFEATNP-RTSEWFIRRYGPKVNL 256 (289)
Q Consensus 187 ~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~ekl-ifEAP~k-~qQ~~~I~~fG~~VNL 256 (289)
-+.+++.+++||..|-|..|.+..- ++..+...+++..+|-+.+ |-|.=-+ ..+...+++. .|-=|
T Consensus 161 -~~El~~a~~~ga~iiGINnRdL~t~--~vd~~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~~-~davL 228 (247)
T PRK13957 161 -EDEAKLALDCGAEIIGINTRDLDTF--QIHQNLVEEVAAFLPPNIVKVGESGIESRSDLDKFRKL-VDAAL 228 (247)
T ss_pred -HHHHHHHHhCCCCEEEEeCCCCccc--eECHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHh-CCEEE
Confidence 2566778899999999999977443 4456667888888886655 4454433 2444555554 44333
No 205
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=86.92 E-value=7.3 Score=35.52 Aligned_cols=94 Identities=13% Similarity=0.146 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcc
Q 022982 69 KPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (289)
Q Consensus 69 ~~~l~eKI~l~~~~gV~v~~G--tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v 146 (289)
+..-.+-++.|+++||.+.|| |.-|+.-.. ++|++.|-+==...-= =..+|+.++. +
T Consensus 87 P~~~~~v~~~~~~~~i~~iPG~~TptEi~~A~-------------~~Ga~~vKlFPA~~~G----G~~yikal~~----p 145 (204)
T TIGR01182 87 PGLTPELAKHAQDHGIPIIPGVATPSEIMLAL-------------ELGITALKLFPAEVSG----GVKMLKALAG----P 145 (204)
T ss_pred CCCCHHHHHHHHHcCCcEECCCCCHHHHHHHH-------------HCCCCEEEECCchhcC----CHHHHHHHhc----c
Confidence 345678889999999999998 788887554 5899999875432110 0256776665 4
Q ss_pred cceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccC
Q 022982 147 KPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKH 212 (289)
Q Consensus 147 ~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~ 212 (289)
+|.+-.. .+| + ++ .+.+..+|+|||.-|-+=+ .|++.
T Consensus 146 lp~i~~~----ptG--G-------V~---------------~~N~~~~l~aGa~~vg~Gs-~L~~~ 182 (204)
T TIGR01182 146 FPQVRFC----PTG--G-------IN---------------LANVRDYLAAPNVACGGGS-WLVPK 182 (204)
T ss_pred CCCCcEE----ecC--C-------CC---------------HHHHHHHHhCCCEEEEECh-hhcCc
Confidence 5544332 111 1 11 4788999999999988744 36543
No 206
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=86.81 E-value=25 Score=33.67 Aligned_cols=138 Identities=12% Similarity=0.082 Sum_probs=84.6
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHH--HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 022982 105 EYVEDCKQVGFDTIELNVGSLEIPEETL--LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (289)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r--~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 182 (289)
+.+..|-+.||+.|=+....+++.+--+ +++++.++..|.-|--|+|.=-+ .+|..-.. . .....-
T Consensus 86 e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg------~e~~~~~~-----~-~~~~~T 153 (282)
T TIGR01858 86 DDIRQKVHAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGG------VEDDLSVD-----E-EDALYT 153 (282)
T ss_pred HHHHHHHHcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCC------ccCCCccc-----c-chhccC
Confidence 5678889999999999766544433222 36778888889999999998321 11210000 0 000112
Q ss_pred cHHHHHHHHHHHHHccCcEEEEec---cccccCCCCccHHHHHHHHhccCCCceEEecC-C-chhHHHHHHHhCCCcccc
Q 022982 183 DVDLLIRRAERCLEAGADMIMIDS---DDVCKHADSLRADIIAKVIGRLGLEKTMFEAT-N-PRTSEWFIRRYGPKVNLF 257 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAGA~~ViiEa---rGI~d~~G~~r~d~v~~ii~~l~~eklifEAP-~-k~qQ~~~I~~fG~~VNLg 257 (289)
||++..+.++ +-|+|.+=|== -|+|...-+++-|.+++|-+.++.-=++==+. . .+|....|+.==..||++
T Consensus 154 ~peea~~Fv~---~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~ 230 (282)
T TIGR01858 154 DPQEAKEFVE---ATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVDVPLVLHGASDVPDEDVRRTIELGICKVNVA 230 (282)
T ss_pred CHHHHHHHHH---HHCcCEEecccCccccCcCCCCccCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEEEeC
Confidence 6777777766 56998775543 39999888999999999988776322222211 2 234444444333567765
No 207
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=86.45 E-value=3.3 Score=39.50 Aligned_cols=70 Identities=20% Similarity=0.354 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHcCCCEEEec------CCcc-------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccc
Q 022982 102 AFKEYVEDCKQVGFDTIELN------VGSL-------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFG 168 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEIS------dGti-------~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~ 168 (289)
.++.|++.+|++||..|-=- ||.. -|.-+.=.++|++|++.||...|=+-
T Consensus 96 ~~~~fl~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T~~yvf----------------- 158 (268)
T PF09370_consen 96 DMDRFLDELKELGFSGVQNFPTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEKGLFTTAYVF----------------- 158 (268)
T ss_dssp -HHHHHHHHHHHT-SEEEE-S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE--EE------------------
T ss_pred cHHHHHHHHHHhCCceEEECCcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHCCCeeeeeec-----------------
Confidence 58899999999999887522 2221 34556667899999998887544211
Q ss_pred cccccCCCCccccccHHHHHHHHHHHHHccCcEEEEec
Q 022982 169 AYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEa 206 (289)
+ .+++++-.+||||.|.+--
T Consensus 159 --------------~----~e~A~~M~~AGaDiiv~H~ 178 (268)
T PF09370_consen 159 --------------N----EEQARAMAEAGADIIVAHM 178 (268)
T ss_dssp --------------S----HHHHHHHHHHT-SEEEEE-
T ss_pred --------------C----HHHHHHHHHcCCCEEEecC
Confidence 0 4677788899999988765
No 208
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=86.40 E-value=3.2 Score=39.37 Aligned_cols=147 Identities=13% Similarity=0.160 Sum_probs=84.5
Q ss_pred HHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecC--C---c---H---HHHHHHhCCchHHHHHHHHHHcC
Q 022982 46 IFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST--G---D---W---AEHLIRNGPSAFKEYVEDCKQVG 114 (289)
Q Consensus 46 lLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~--G---t---l---fE~a~~qg~~~~~~yl~~~k~lG 114 (289)
-++.+++|+|++.+|- .+|..- +.+.-+-+.|-+|-. | | | .|++...|..++ .+.+-|
T Consensus 85 ~~~~vae~vDilQIgA---rn~rn~---~LL~a~g~t~kpV~lKrG~~~t~~e~l~aaeyi~~~Gn~~v-----iLcERG 153 (258)
T TIGR01362 85 QCEPVAEVVDIIQIPA---FLCRQT---DLLVAAAKTGRIVNVKKGQFLSPWDMKNVVEKVLSTGNKNI-----LLCERG 153 (258)
T ss_pred HHHHHHhhCcEEEeCc---hhcchH---HHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHcCCCcE-----EEEeCC
Confidence 3567789999999984 222211 223333344555543 4 2 2 344444442211 123445
Q ss_pred CCEEEecCCcccCChhHHHHHHHHHHHcCCccccee--eeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHH
Q 022982 115 FDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF--AVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAE 192 (289)
Q Consensus 115 F~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~--g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~ 192 (289)
++. |.-.+..|- +.|-.+++.++-|+..- .+|.+.. .++.. -| ..+.+...++
T Consensus 154 ~tf-----~y~r~~~D~--~~ip~~k~~~~PVi~DpSHsvq~pg~----~g~~s------------~G--~r~~v~~la~ 208 (258)
T TIGR01362 154 TSF-----GYNNLVVDM--RSLPIMRELGCPVIFDATHSVQQPGG----LGGAS------------GG--LREFVPTLAR 208 (258)
T ss_pred CCc-----CCCCcccch--hhhHHHHhcCCCEEEeCCccccCCCC----CCCCC------------CC--cHHHHHHHHH
Confidence 422 222222222 35666677777665433 3333321 11110 01 1456678888
Q ss_pred HHHHccCcEEEEecc-----ccccCCCCccHHHHHHHHhcc
Q 022982 193 RCLEAGADMIMIDSD-----DVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 193 ~dLeAGA~~ViiEar-----GI~d~~G~~r~d~v~~ii~~l 228 (289)
..+.+|||-+|||.- -++|....+..+.++++++.+
T Consensus 209 AAvA~GaDGl~iEvHpdP~~AlsDg~q~l~~~~~~~ll~~l 249 (258)
T TIGR01362 209 AAVAVGIDGLFMETHPDPKNAKSDGPNMLPLSELEGLLEKL 249 (258)
T ss_pred HHHHhCCCEEEEEeCCCccccCCCccccCCHHHHHHHHHHH
Confidence 999999999999994 699999999999999998765
No 209
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=86.39 E-value=12 Score=34.75 Aligned_cols=120 Identities=19% Similarity=0.171 Sum_probs=73.2
Q ss_pred ChhHHHHHHHHHHhCCc-eecCCcHHHHHHHhCCchHHHHHH---HHHHcCCCEEEecCCc-------------ccCChh
Q 022982 68 PKPFIEEVVKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYVE---DCKQVGFDTIELNVGS-------------LEIPEE 130 (289)
Q Consensus 68 p~~~l~eKI~l~~~~gV-~v~~GtlfE~a~~qg~~~~~~yl~---~~k~lGF~~IEISdGt-------------i~i~~~ 130 (289)
|++++.+-+..+++... .+.-|+ +..++|++ .+.+ +++.|||+-|+ +--.++
T Consensus 53 ~~~~i~~e~~~~~~~~~vivnv~~----------~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~ 121 (231)
T TIGR00736 53 FNSYIIEQIKKAESRALVSVNVRF----------VDLEEAYDVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKE 121 (231)
T ss_pred HHHHHHHHHHHHhhcCCEEEEEec----------CCHHHHHHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHH
Confidence 45777777777765443 223332 12222222 2333 79999999887 334677
Q ss_pred HHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccc
Q 022982 131 TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVC 210 (289)
Q Consensus 131 ~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~ 210 (289)
.-.++++.+++.+ +| +.+|-... | +....++.++...++||+.|.|+++ |
T Consensus 122 ~l~~iv~av~~~~---~P-VsvKiR~~------------------~------~~~~~~~~a~~l~~aGad~i~Vd~~--~ 171 (231)
T TIGR00736 122 LLKEFLTKMKELN---KP-IFVKIRGN------------------C------IPLDELIDALNLVDDGFDGIHVDAM--Y 171 (231)
T ss_pred HHHHHHHHHHcCC---Cc-EEEEeCCC------------------C------CcchHHHHHHHHHHcCCCEEEEeeC--C
Confidence 7788888888643 33 67765321 1 1223468888888999999999753 3
Q ss_pred cCCCCccHHHHHHHHhcc
Q 022982 211 KHADSLRADIIAKVIGRL 228 (289)
Q Consensus 211 d~~G~~r~d~v~~ii~~l 228 (289)
...+....+.|.++.+.+
T Consensus 172 ~g~~~a~~~~I~~i~~~~ 189 (231)
T TIGR00736 172 PGKPYADMDLLKILSEEF 189 (231)
T ss_pred CCCchhhHHHHHHHHHhc
Confidence 222225566677766654
No 210
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=86.36 E-value=10 Score=36.72 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=19.0
Q ss_pred cHHHHHHHHHHHHHccCcEEEE
Q 022982 183 DVDLLIRRAERCLEAGADMIMI 204 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAGA~~Vii 204 (289)
++++.++.+++.-++|+|+|-+
T Consensus 222 ~~~e~~~i~~~Le~~G~d~i~v 243 (353)
T cd02930 222 TWEEVVALAKALEAAGADILNT 243 (353)
T ss_pred CHHHHHHHHHHHHHcCCCEEEe
Confidence 5788888888888899999988
No 211
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=85.93 E-value=19 Score=34.63 Aligned_cols=80 Identities=13% Similarity=0.105 Sum_probs=45.5
Q ss_pred hhHHHHHHHhhccc-ccEEEecCccccccC-------hhHHHHHHHHHHhC-CceecC--CcHHHHHHHhCCchHHHHHH
Q 022982 40 HNVLEDIFESMGQF-VDGLKFSGGSHSLMP-------KPFIEEVVKRAHQH-DVYVST--GDWAEHLIRNGPSAFKEYVE 108 (289)
Q Consensus 40 ~~~~~DlLe~ag~y-ID~lKfg~GTs~l~p-------~~~l~eKI~l~~~~-gV~v~~--GtlfE~a~~qg~~~~~~yl~ 108 (289)
+..+.|+.+.+-++ .|++=+-.++....+ ++.+.+.++-.++. ++++.. ...+ +.+.+..+
T Consensus 111 ~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p~~--------~~~~~~a~ 182 (325)
T cd04739 111 AGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSPFF--------SALAHMAK 182 (325)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCCCc--------cCHHHHHH
Confidence 33444554444332 666666655422221 13455666655544 444432 1111 25778888
Q ss_pred HHHHcCCCEEEecCCcccC
Q 022982 109 DCKQVGFDTIELNVGSLEI 127 (289)
Q Consensus 109 ~~k~lGF~~IEISdGti~i 127 (289)
.+.+.|.|+|-+++.+..+
T Consensus 183 ~l~~~Gadgi~~~nt~~~~ 201 (325)
T cd04739 183 QLDAAGADGLVLFNRFYQP 201 (325)
T ss_pred HHHHcCCCeEEEEcCcCCC
Confidence 8999999999999987443
No 212
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=85.82 E-value=7.8 Score=35.46 Aligned_cols=103 Identities=18% Similarity=0.135 Sum_probs=64.8
Q ss_pred CceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCce---------------ecCC
Q 022982 25 GVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVY---------------VSTG 89 (289)
Q Consensus 25 GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~---------------v~~G 89 (289)
.++.+.+=|+. ....++.+++ +| .|. +..||..+.+++.+++-.+.+.+-.|. |.+-
T Consensus 74 ~ipv~~~GGi~---s~~~~~~~l~-~G--a~~--Viigt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~ 145 (253)
T PRK02083 74 FIPLTVGGGIR---SVEDARRLLR-AG--ADK--VSINSAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTH 145 (253)
T ss_pred CCCEEeeCCCC---CHHHHHHHHH-cC--CCE--EEEChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEc
Confidence 45666666662 4566677777 33 444 466888888888888866655211122 2222
Q ss_pred cHHHHHHHhCCchHHHHHHHHHHcCCCEEEe----cCCcccCChhHHHHHHHHHHHc
Q 022982 90 DWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL----NVGSLEIPEETLLRYVRLVKSA 142 (289)
Q Consensus 90 tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEI----SdGti~i~~~~r~~lI~~~~~~ 142 (289)
+|.+. ......++.+.+.++|++.|=+ .+|+..-++ ..+|+.+++.
T Consensus 146 ~~~~~----~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d---~~~i~~~~~~ 195 (253)
T PRK02083 146 GGRKP----TGLDAVEWAKEVEELGAGEILLTSMDRDGTKNGYD---LELTRAVSDA 195 (253)
T ss_pred CCcee----cCCCHHHHHHHHHHcCCCEEEEcCCcCCCCCCCcC---HHHHHHHHhh
Confidence 34432 1226778899999999999888 457777664 4566666663
No 213
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=85.81 E-value=21 Score=34.24 Aligned_cols=190 Identities=12% Similarity=0.189 Sum_probs=113.1
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCcee----cCCcH----HHHHHH----------------
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV----STGDW----AEHLIR---------------- 97 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v----~~Gtl----fE~a~~---------------- 97 (289)
.++++|..|-+- +++-|.+-+++-+.++.-|+-|.+.+-++ ++|+. ++.+..
T Consensus 5 ~~k~ll~~A~~~----~yaV~AfN~~n~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~vPV~lH 80 (283)
T PRK07998 5 NGRILLDRIQEK----HVLAGAFNTTNLETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDVPVSLH 80 (283)
T ss_pred cHHHHHHHHHHC----CCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 566666655432 46777778888888888888888877432 22211 121111
Q ss_pred --hCCchHHHHHHHHHHcCCCEEEecCCcccCChhH----HHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 022982 98 --NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEET----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (289)
Q Consensus 98 --qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~----r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~ 171 (289)
++ .--+.+..|-+.||+.|=+ |||- +|.++ =.++++.++..|.-|--|+|.=-+ ++|...
T Consensus 81 LDH~--~~~e~i~~Ai~~GftSVM~-DgS~-l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg------~ed~~~---- 146 (283)
T PRK07998 81 LDHG--KTFEDVKQAVRAGFTSVMI-DGAA-LPFEENIAFTKEAVDFAKSYGVPVEAELGAILG------KEDDHV---- 146 (283)
T ss_pred CcCC--CCHHHHHHHHHcCCCEEEE-eCCC-CCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCC------cccccc----
Confidence 22 2236777888999999999 5654 56543 346778888889999999988221 222100
Q ss_pred ccCCCCccccccHHHHHHHHHHHHHccCcEEEEec---cccccCCCCccHHHHHHHHhccCCCceEEecC-Cc-hhHHHH
Q 022982 172 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS---DDVCKHADSLRADIIAKVIGRLGLEKTMFEAT-NP-RTSEWF 246 (289)
Q Consensus 172 ~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEa---rGI~d~~G~~r~d~v~~ii~~l~~eklifEAP-~k-~qQ~~~ 246 (289)
. .. ....||++..+.++ +-|+|.+=+== -|+|.. -+++.|.+++|-+.++.-=+|==++ .+ +|....
T Consensus 147 ~---~~-~~~T~pe~a~~Fv~---~TgvD~LAvaiGt~HG~Y~~-p~l~~~~l~~I~~~~~vPLVlHGgSG~~~e~~~~a 218 (283)
T PRK07998 147 S---EA-DCKTEPEKVKDFVE---RTGCDMLAVSIGNVHGLEDI-PRIDIPLLKRIAEVSPVPLVIHGGSGIPPEILRSF 218 (283)
T ss_pred c---cc-cccCCHHHHHHHHH---HhCcCeeehhccccccCCCC-CCcCHHHHHHHHhhCCCCEEEeCCCCCCHHHHHHH
Confidence 0 00 01126777655555 46888665543 289987 7788999999988765433333222 22 333334
Q ss_pred HHHhCCCcccc
Q 022982 247 IRRYGPKVNLF 257 (289)
Q Consensus 247 I~~fG~~VNLg 257 (289)
|+.==..||.+
T Consensus 219 i~~Gi~KiNi~ 229 (283)
T PRK07998 219 VNYKVAKVNIA 229 (283)
T ss_pred HHcCCcEEEEC
Confidence 44333456665
No 214
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=85.79 E-value=13 Score=36.70 Aligned_cols=60 Identities=15% Similarity=0.072 Sum_probs=40.6
Q ss_pred cCccccccChhHHHHHHHHHHhC-CceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc
Q 022982 60 SGGSHSLMPKPFIEEVVKRAHQH-DVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE 126 (289)
Q Consensus 60 g~GTs~l~p~~~l~eKI~l~~~~-gV~v~~G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~ 126 (289)
+.|......++.+.+.++..++. ++++..= + -+...+.+..+.+.+.|.+.|=+.|-+..
T Consensus 144 ~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~-------p~~~~~~~~a~~~~~~Gadgi~~~Nt~~~ 205 (420)
T PRK08318 144 GMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLT-------PNITDIREPARAAKRGGADAVSLINTINS 205 (420)
T ss_pred CCcccccCCHHHHHHHHHHHHhccCCcEEEEcC-------CCcccHHHHHHHHHHCCCCEEEEecccCc
Confidence 34556667888999999999875 4544421 1 11124667778888999999987766654
No 215
>PRK09989 hypothetical protein; Provisional
Probab=85.64 E-value=1.5 Score=39.87 Aligned_cols=42 Identities=19% Similarity=0.368 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAK 147 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~ 147 (289)
.+.+.++.++++||+.||+.. ....+ ..++-+.+++.|+++.
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~-~~~~~---~~~~~~~l~~~Gl~v~ 57 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLF-PYDYS---TLQIQKQLEQNHLTLA 57 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECC-cccCC---HHHHHHHHHHcCCcEE
Confidence 789999999999999999964 33344 3457777889999865
No 216
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=85.49 E-value=19 Score=34.45 Aligned_cols=26 Identities=12% Similarity=0.063 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEI 127 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i 127 (289)
.+.++.+.|++.|.|+|.+++.+..+
T Consensus 178 ~~~~~a~~l~~~G~dgI~~~n~~~~~ 203 (334)
T PRK07565 178 NLANMAKRLDAAGADGLVLFNRFYQP 203 (334)
T ss_pred hHHHHHHHHHHcCCCeEEEECCcCCC
Confidence 45788899999999999999887544
No 217
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=85.43 E-value=6.3 Score=37.42 Aligned_cols=47 Identities=15% Similarity=0.296 Sum_probs=39.8
Q ss_pred HHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEec
Q 022982 189 RRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEA 237 (289)
Q Consensus 189 ~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklifEA 237 (289)
+++++.|++||++|||=+--+. ++.+.++++.++++++|.++|+.=-
T Consensus 95 e~i~~~l~~Ga~rViigT~Av~--~~~~~p~~v~~~~~~~G~~~Ivvsi 141 (262)
T PLN02446 95 ENAMSYLDAGASHVIVTSYVFR--DGQIDLERLKDLVRLVGKQRLVLDL 141 (262)
T ss_pred HHHHHHHHcCCCEEEEchHHHh--CCCCCHHHHHHHHHHhCCCCEEEEE
Confidence 8899999999999999654444 4788999999999999999988733
No 218
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=85.41 E-value=11 Score=38.58 Aligned_cols=146 Identities=16% Similarity=0.132 Sum_probs=90.6
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (289)
.+-+.|..+| ||.+=.||-.+.=.+.+.+++..+..+ +..++ .|. .-.+..++.-++..++.+.+.|-+.
T Consensus 27 ~ia~~L~~~G--V~~IEvG~p~~s~~d~e~v~~i~~~~~--~~~i~--al~----r~~~~did~a~~al~~~~~~~v~i~ 96 (494)
T TIGR00973 27 QIALALERLG--VDIIEAGFPVSSPGDFEAVQRIARTVK--NPRVC--GLA----RCVEKDIDAAAEALKPAEKFRIHTF 96 (494)
T ss_pred HHHHHHHHcC--CCEEEEECCCCCHHHHHHHHHHHHhCC--CCEEE--EEc----CCCHHhHHHHHHhccccCCCEEEEE
Confidence 4556777787 899998886554333444443333222 22222 121 1112245555555566688888887
Q ss_pred CCccc--------CChhH----HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHH
Q 022982 122 VGSLE--------IPEET----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (289)
Q Consensus 122 dGti~--------i~~~~----r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~ 189 (289)
-.+-+ .+.++ -.+.|+.+++.|+. .+|+-.+. .+. |++.+++
T Consensus 97 ~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~--v~f~~Ed~------------------~r~------d~~~l~~ 150 (494)
T TIGR00973 97 IATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDD--VEFSCEDA------------------GRT------EIPFLAR 150 (494)
T ss_pred EccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCe--EEEEcCCC------------------CCC------CHHHHHH
Confidence 66533 23333 23678888898875 24443221 011 5889999
Q ss_pred HHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 190 RAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 190 ~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
.++...++||+.| .|+|..|-..++.+.++++.+
T Consensus 151 ~~~~~~~~Ga~~i-----~l~DTvG~~~P~~~~~~i~~l 184 (494)
T TIGR00973 151 IVEAAINAGATTI-----NIPDTVGYALPAEYGNLIKGL 184 (494)
T ss_pred HHHHHHHcCCCEE-----EeCCCCCCCCHHHHHHHHHHH
Confidence 9999999999865 478999999999888888654
No 219
>PRK15108 biotin synthase; Provisional
Probab=85.29 E-value=5.6 Score=38.64 Aligned_cols=131 Identities=17% Similarity=0.279 Sum_probs=68.0
Q ss_pred ccChhHHHHHHHHHHhCCc-eecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcC
Q 022982 66 LMPKPFIEEVVKRAHQHDV-YVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAG 143 (289)
Q Consensus 66 l~p~~~l~eKI~l~~~~gV-~v~~G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G 143 (289)
+++.+.+.++...+.+.|+ .++.| +|.+- ....-+.+.+-++.+|+.|...+ +|.|. ++.+. .++++++|
T Consensus 75 ~ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p-~~~~~e~i~~~i~~ik~~~i~v~-~s~G~--ls~e~----l~~LkeAG 146 (345)
T PRK15108 75 LMEVEQVLESARKAKAAGSTRFCMGAAWKNP-HERDMPYLEQMVQGVKAMGLETC-MTLGT--LSESQ----AQRLANAG 146 (345)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEecCCCC-CcchHHHHHHHHHHHHhCCCEEE-EeCCc--CCHHH----HHHHHHcC
Confidence 4555667777777777888 55443 34211 01111135555666677776544 77774 34433 34446777
Q ss_pred CcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHH
Q 022982 144 LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAK 223 (289)
Q Consensus 144 ~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ 223 (289)
+.. +++.- |+ ++.+.+.+.+ ..+.+++++.++...++|- -+-+-+|+-- |+..+|.++-
T Consensus 147 ld~---~n~~l---eT----~p~~f~~I~~-------~~~~~~rl~~i~~a~~~G~---~v~sg~i~Gl-gEt~ed~v~~ 205 (345)
T PRK15108 147 LDY---YNHNL---DT----SPEFYGNIIT-------TRTYQERLDTLEKVRDAGI---KVCSGGIVGL-GETVKDRAGL 205 (345)
T ss_pred CCE---Eeecc---cc----ChHhcCCCCC-------CCCHHHHHHHHHHHHHcCC---ceeeEEEEeC-CCCHHHHHHH
Confidence 762 22211 00 1111111110 1246778888888888884 2222345554 7777777776
Q ss_pred HH
Q 022982 224 VI 225 (289)
Q Consensus 224 ii 225 (289)
+.
T Consensus 206 ~~ 207 (345)
T PRK15108 206 LL 207 (345)
T ss_pred HH
Confidence 65
No 220
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=84.92 E-value=8.5 Score=35.37 Aligned_cols=123 Identities=12% Similarity=0.154 Sum_probs=75.0
Q ss_pred HHHHHHHhhcc-----cccEEEecCccccccChhHHHHHHHHHHhCCce---ec-C-CcHHHHHHHhCCch-----HHHH
Q 022982 42 VLEDIFESMGQ-----FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVY---VS-T-GDWAEHLIRNGPSA-----FKEY 106 (289)
Q Consensus 42 ~~~DlLe~ag~-----yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~---v~-~-GtlfE~a~~qg~~~-----~~~y 106 (289)
.|+|+|+.+.+ +|+ +|-.-+. .-++.+.++..+++++++|.. +. . -...+.+-...|+. ...+
T Consensus 115 tL~evl~~~~~~~~~l~iE-iK~~~~~-~~~~~~~~~~v~~~l~~~~~~~~~v~~s~~~~~~~~~~~~p~~~~~~~~~~~ 192 (252)
T cd08574 115 SLAELLRLAKKHNKSVIFD-LRRPPPN-HPYYQSYVNITLDTILASGIPQHQVFWLPDEYRALVRKVAPGFQQVSGRKLP 192 (252)
T ss_pred CHHHHHHHHHHcCCeEEEE-ecCCccc-CccHHHHHHHHHHHHHHcCCCcccEEEccHHHHHHHHHHCCCCeEeeccccc
Confidence 78888887753 233 4743321 123345778899999999862 22 2 12333443334331 1233
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHH
Q 022982 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (289)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (289)
....+++|++.+-++...++ .++|+.++++|++|.+ .++. +
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~g~~v~~-WTVn--------------------------------~ 233 (252)
T cd08574 193 VESLRENGISRLNLEYSQLS------AQEIREYSKANISVNL-YVVN--------------------------------E 233 (252)
T ss_pred hHHHHhcCCeEEccCcccCC------HHHHHHHHHCCCEEEE-EccC--------------------------------C
Confidence 44556788887766655442 3689999999888655 3331 1
Q ss_pred HHHHHHHHHHccCcEEEEec
Q 022982 187 LIRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 187 ~I~~~~~dLeAGA~~ViiEa 206 (289)
.+++++.++.|+|-||..+
T Consensus 234 -~~~~~~l~~~GVdgIiTD~ 252 (252)
T cd08574 234 -PWLYSLLWCSGVQSVTTNA 252 (252)
T ss_pred -HHHHHHHHHcCCCEEecCc
Confidence 3678888999999999754
No 221
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=84.88 E-value=11 Score=40.44 Aligned_cols=111 Identities=18% Similarity=0.190 Sum_probs=87.0
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHH
Q 022982 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (289)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (289)
+.+++.+|-|+|=+-...+ +.++..++++.+++.||.|+-|++-
T Consensus 126 I~ea~~~GADavLLI~~~L--~~~~l~~l~~~a~~lGme~LvEvh~---------------------------------- 169 (695)
T PRK13802 126 IWEARAHGADLVLLIVAAL--DDAQLKHLLDLAHELGMTVLVETHT---------------------------------- 169 (695)
T ss_pred HHHHHHcCCCEeehhHhhc--CHHHHHHHHHHHHHcCCeEEEEeCC----------------------------------
Confidence 6789999999999887766 4788999999999999999999876
Q ss_pred HHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCce-EEecCCc-hhHHHHHHHhCCCccc
Q 022982 187 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKT-MFEATNP-RTSEWFIRRYGPKVNL 256 (289)
Q Consensus 187 ~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~ekl-ifEAP~k-~qQ~~~I~~fG~~VNL 256 (289)
-+.+++.+++||..|-|..|.+..- ++..+.-.+|+..+|-+.+ |-|.=-+ ..+...+.+.|.|-=|
T Consensus 170 -~~el~~a~~~ga~iiGINnRdL~tf--~vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l~~~G~davL 238 (695)
T PRK13802 170 -REEIERAIAAGAKVIGINARNLKDL--KVDVNKYNELAADLPDDVIKVAESGVFGAVEVEDYARAGADAVL 238 (695)
T ss_pred -HHHHHHHHhCCCCEEEEeCCCCccc--eeCHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHCCCCEEE
Confidence 2566778999999999999977443 4446667778888886655 4455433 4677788888877655
No 222
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=84.75 E-value=38 Score=32.44 Aligned_cols=138 Identities=13% Similarity=0.152 Sum_probs=82.2
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhH--HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 022982 105 EYVEDCKQVGFDTIELNVGSLEIPEET--LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (289)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~--r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 182 (289)
+.+..|-++||+.|=+..-.+++.+-- =+++++.++..|.-|--|+|.=- . ++|..- .. .- .....
T Consensus 88 e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vg-g-----~e~~~~---~~--~~-~~~~T 155 (284)
T PRK09195 88 DDIAQKVRSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLG-G-----QEDDLQ---VD--EA-DALYT 155 (284)
T ss_pred HHHHHHHHcCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccc-C-----cccCcc---cc--cc-cccCC
Confidence 567778899999999976654443322 23677788888999999998832 1 112100 00 00 00012
Q ss_pred cHHHHHHHHHHHHHccCcEEEEec---cccccCCCCccHHHHHHHHhccCCCceEEecC-CchhHHHHHHHhC-CCcccc
Q 022982 183 DVDLLIRRAERCLEAGADMIMIDS---DDVCKHADSLRADIIAKVIGRLGLEKTMFEAT-NPRTSEWFIRRYG-PKVNLF 257 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAGA~~ViiEa---rGI~d~~G~~r~d~v~~ii~~l~~eklifEAP-~k~qQ~~~I~~fG-~~VNLg 257 (289)
||++..+.++ +-|+|..-|== -|+|...-+++-+.+++|-+.++.--++==+. .|..|.-=.-+.| ..||++
T Consensus 156 ~peea~~Fv~---~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~ 232 (284)
T PRK09195 156 DPAQAREFVE---ATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVNIPLVLHGASGLPTKDIQQTIKLGICKVNVA 232 (284)
T ss_pred CHHHHHHHHH---HHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEEEeC
Confidence 5666555555 46988776543 39999888999999999988765332332222 2333332223344 467776
No 223
>PRK08185 hypothetical protein; Provisional
Probab=84.75 E-value=31 Score=33.01 Aligned_cols=174 Identities=17% Similarity=0.259 Sum_probs=97.2
Q ss_pred EEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHH-
Q 022982 57 LKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRY- 135 (289)
Q Consensus 57 lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~l- 135 (289)
+-++-|+...++.+...--..+++++.|+|.. -+-++ .=.+.++.|-+.||+.|=+..-. +|.++-.++
T Consensus 42 l~~~~~~~~~~~~~~~~~~~~~a~~~~vPV~l------HLDHg--~~~e~i~~ai~~Gf~SVM~D~S~--l~~eeNi~~t 111 (283)
T PRK08185 42 IAIHPNELDFLGDNFFAYVRERAKRSPVPFVI------HLDHG--ATIEDVMRAIRCGFTSVMIDGSL--LPYEENVALT 111 (283)
T ss_pred EEeCcchhhhccHHHHHHHHHHHHHCCCCEEE------ECCCC--CCHHHHHHHHHcCCCEEEEeCCC--CCHHHHHHHH
Confidence 33444444444444444455566677776653 01111 11345666778999999887655 566666554
Q ss_pred ---HHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCc-cccccHHHHHHHHHHHHHc-cCcEEEEe---cc
Q 022982 136 ---VRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST-EYVEDVDLLIRRAERCLEA-GADMIMID---SD 207 (289)
Q Consensus 136 ---I~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~-~~~~~~~~~I~~~~~dLeA-GA~~ViiE---ar 207 (289)
++.++..|..|--|+|. -+.. .|.. .. ..+ ...-|| ++++++.+. |+|++-+= +-
T Consensus 112 ~~vv~~a~~~gv~vE~ElG~-vg~~-----e~~~---~~----~~~~~~~t~p----eea~~f~~~TgvD~LAvaiGt~H 174 (283)
T PRK08185 112 KEVVELAHKVGVSVEGELGT-IGNT-----GTSI---EG----GVSEIIYTDP----EQAEDFVSRTGVDTLAVAIGTAH 174 (283)
T ss_pred HHHHHHHHHcCCeEEEEEee-ccCc-----cccc---cc----ccccccCCCH----HHHHHHHHhhCCCEEEeccCccc
Confidence 45556779999889988 2221 1110 00 000 001134 555667766 99998883 35
Q ss_pred ccccC--CCCccHHHHHHHHhccCCCceEEecC-CchhHHHHHHHhC-CCcccc
Q 022982 208 DVCKH--ADSLRADIIAKVIGRLGLEKTMFEAT-NPRTSEWFIRRYG-PKVNLF 257 (289)
Q Consensus 208 GI~d~--~G~~r~d~v~~ii~~l~~eklifEAP-~k~qQ~~~I~~fG-~~VNLg 257 (289)
|+|.. .-+++-+.+.+|-+.++.--++-=.. .|..|.-=.-+.| ..||++
T Consensus 175 G~y~~~~kp~L~~e~l~~I~~~~~iPLVlHGgsg~~~e~~~~ai~~GI~KiNi~ 228 (283)
T PRK08185 175 GIYPKDKKPELQMDLLKEINERVDIPLVLHGGSANPDAEIAESVQLGVGKINIS 228 (283)
T ss_pred CCcCCCCCCCcCHHHHHHHHHhhCCCEEEECCCCCCHHHHHHHHHCCCeEEEeC
Confidence 89987 45788999999987765433333322 2333333233444 456665
No 224
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=84.57 E-value=9.1 Score=30.55 Aligned_cols=96 Identities=23% Similarity=0.378 Sum_probs=70.3
Q ss_pred chhHHHHHHHhhc-cc-ccEEEecCccccccChhHHHHHHHHHHhC---CceecC---CcHHHHHHHhCCchHHHHHHHH
Q 022982 39 SHNVLEDIFESMG-QF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQH---DVYVST---GDWAEHLIRNGPSAFKEYVEDC 110 (289)
Q Consensus 39 g~~~~~DlLe~ag-~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~---gV~v~~---GtlfE~a~~qg~~~~~~yl~~~ 110 (289)
.+..+.+.+.... +. +..+=++.|...+.| ...+++..+++. ++.+.. |++.. +++++.+
T Consensus 29 ~~e~i~~~~~~~~~~~~~~~i~~~~gep~~~~--~~~~~~~~~~~~~~~~~~i~~~t~~~~~~----------~~~l~~l 96 (166)
T PF04055_consen 29 SPEEILEEIKELKQDKGVKEIFFGGGEPTLHP--DFIELLELLRKIKKRGIRISINTNGTLLD----------EELLDEL 96 (166)
T ss_dssp HHHHHHHHHHHHHHHTTHEEEEEESSTGGGSC--HHHHHHHHHHHCTCTTEEEEEEEESTTHC----------HHHHHHH
T ss_pred CHHHHHHHHHHHhHhcCCcEEEEeecCCCcch--hHHHHHHHHHHhhccccceeeeccccchh----------HHHHHHH
Confidence 4455555555552 32 899999999999998 667777777775 775553 55443 6788889
Q ss_pred HHcCCCEEEecCCcc-----------cCChhHHHHHHHHHHHcCCcc
Q 022982 111 KQVGFDTIELNVGSL-----------EIPEETLLRYVRLVKSAGLKA 146 (289)
Q Consensus 111 k~lGF~~IEISdGti-----------~i~~~~r~~lI~~~~~~G~~v 146 (289)
+++|++.|.+|=-+. .-+.++..+.++.+++.|+..
T Consensus 97 ~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~ 143 (166)
T PF04055_consen 97 KKLGVDRIRISLESLDEESVLRIINRGKSFERVLEALERLKEAGIPR 143 (166)
T ss_dssp HHTTCSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHHTTSET
T ss_pred HhcCccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHHcCCCc
Confidence 999999999875554 235677788999999999884
No 225
>PRK04302 triosephosphate isomerase; Provisional
Probab=84.45 E-value=13 Score=33.43 Aligned_cols=91 Identities=23% Similarity=0.231 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHhCCc--eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC----Ccc-c---CChhHHHHHHHHH
Q 022982 70 PFIEEVVKRAHQHDV--YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV----GSL-E---IPEETLLRYVRLV 139 (289)
Q Consensus 70 ~~l~eKI~l~~~~gV--~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISd----Gti-~---i~~~~r~~lI~~~ 139 (289)
+.+++|++.++++|+ .+|.|+.- . ++.+.++|.+.|.+-. ||- . -+++.-.++++.+
T Consensus 101 ~e~~~~v~~a~~~Gl~~I~~v~~~~---------~----~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~i 167 (223)
T PRK04302 101 ADIEAVVERAKKLGLESVVCVNNPE---------T----SAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAV 167 (223)
T ss_pred HHHHHHHHHHHHCCCeEEEEcCCHH---------H----HHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHH
Confidence 347888888888888 33456621 1 1223556777777532 221 2 3345555666666
Q ss_pred HHc--CCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEec
Q 022982 140 KSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 140 ~~~--G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEa 206 (289)
++. ...+..++|++. -+.+++.+++|||-|+|=+
T Consensus 168 r~~~~~~pvi~GggI~~---------------------------------~e~~~~~~~~gadGvlVGs 203 (223)
T PRK04302 168 KKVNPDVKVLCGAGIST---------------------------------GEDVKAALELGADGVLLAS 203 (223)
T ss_pred HhccCCCEEEEECCCCC---------------------------------HHHHHHHHcCCCCEEEEeh
Confidence 653 466666666632 2555667789999988744
No 226
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=84.40 E-value=9.3 Score=36.71 Aligned_cols=78 Identities=14% Similarity=0.145 Sum_probs=55.3
Q ss_pred EecCccccccChhHHHHHHHHHHhC---Cceec--C-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccC----
Q 022982 58 KFSGGSHSLMPKPFIEEVVKRAHQH---DVYVS--T-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEI---- 127 (289)
Q Consensus 58 Kfg~GTs~l~p~~~l~eKI~l~~~~---gV~v~--~-GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i---- 127 (289)
|-|.|++.+-.++.+.+.++-.++. +++|+ . .||- ..+...++.+.+.+.|.+.|-|+.+|-.=
T Consensus 105 ~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~------~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g 178 (312)
T PRK10550 105 GSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWD------SGERKFEIADAVQQAGATELVVHGRTKEDGYRA 178 (312)
T ss_pred cCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCC------CchHHHHHHHHHHhcCCCEEEECCCCCccCCCC
Confidence 7788888899999999999888874 35444 2 2441 11245688888999999999999887522
Q ss_pred ChhHHHHHHHHHHHc
Q 022982 128 PEETLLRYVRLVKSA 142 (289)
Q Consensus 128 ~~~~r~~lI~~~~~~ 142 (289)
+.-++ ++|++++++
T Consensus 179 ~~~~~-~~i~~ik~~ 192 (312)
T PRK10550 179 EHINW-QAIGEIRQR 192 (312)
T ss_pred CcccH-HHHHHHHhh
Confidence 22233 788888884
No 227
>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....
Probab=83.98 E-value=2.5 Score=38.11 Aligned_cols=97 Identities=15% Similarity=0.184 Sum_probs=70.6
Q ss_pred chhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCCc-HHHHHHHhCCchHHHHHH---HHHHcC
Q 022982 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGD-WAEHLIRNGPSAFKEYVE---DCKQVG 114 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~Gt-lfE~a~~qg~~~~~~yl~---~~k~lG 114 (289)
....+.++++..++|+|++|+|+--..-+..+.+++-++.+++++.++.--. +..+ |+-+..|.+ .+.++|
T Consensus 11 ~~~~a~~i~~~~~~~v~~iKvG~~l~~~~G~~~l~~~i~~l~~~~~~I~~D~K~~Di-----g~t~~~~~~~~~~~~~~g 85 (226)
T PF00215_consen 11 DLEEALRIADELGDYVDIIKVGTPLFLAYGLEALPEIIEELKERGKPIFLDLKLGDI-----GNTVARYAEAGFAAFELG 85 (226)
T ss_dssp SHHHHHHHHHHHGGGSSEEEEEHHHHHHHCHHHHHHHHHHHHHTTSEEEEEEEE-SS-----HHHHHHHHHSCHHHHTTT
T ss_pred CHHHHHHHHHHhcCcceEEEEChHHHhcCChhhHHHHHHHHHHhcCCEeeeeeeccc-----chHHHHHHHHhhhhhcCC
Confidence 4567889999999999999999877777776689999999999997665421 2211 112334444 567889
Q ss_pred CCEEEecCCcccCChhHHHHHHHHHHHcC
Q 022982 115 FDTIELNVGSLEIPEETLLRYVRLVKSAG 143 (289)
Q Consensus 115 F~~IEISdGti~i~~~~r~~lI~~~~~~G 143 (289)
+|++-|+-- .+.+....+++.+++.|
T Consensus 86 aD~vTv~~~---~G~~tl~~~~~~a~~~~ 111 (226)
T PF00215_consen 86 ADAVTVHPF---AGDDTLEAAVKAAKKHG 111 (226)
T ss_dssp ESEEEEEGT---THHHHHHHHHHHHHHTT
T ss_pred CcEEEEecc---CCHHHHHHHHHHHhccC
Confidence 999988643 34777778888888876
No 228
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=83.85 E-value=8.2 Score=36.33 Aligned_cols=115 Identities=22% Similarity=0.295 Sum_probs=80.6
Q ss_pred HHHH-HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 022982 103 FKEY-VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (289)
Q Consensus 103 ~~~y-l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 181 (289)
+++| +.+++..|=|+|=+-... ++.++..++++.+.+.||.++-|++-
T Consensus 119 id~~QI~eA~~~GADaVLLI~~~--L~~~~l~~l~~~a~~lGle~lVEVh~----------------------------- 167 (254)
T PF00218_consen 119 IDPYQIYEARAAGADAVLLIAAI--LSDDQLEELLELAHSLGLEALVEVHN----------------------------- 167 (254)
T ss_dssp -SHHHHHHHHHTT-SEEEEEGGG--SGHHHHHHHHHHHHHTT-EEEEEESS-----------------------------
T ss_pred CCHHHHHHHHHcCCCEeehhHHh--CCHHHHHHHHHHHHHcCCCeEEEECC-----------------------------
Confidence 3444 678999999999887665 55677789999999999999999876
Q ss_pred ccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCc-eEEecCCc-hhHHHHHHHhCCCccc
Q 022982 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEK-TMFEATNP-RTSEWFIRRYGPKVNL 256 (289)
Q Consensus 182 ~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~ek-lifEAP~k-~qQ~~~I~~fG~~VNL 256 (289)
-+.+++.+++||+.|-|-.|.+-.- ++..+...+++..+|.+. +|-|.=-+ ..+...+++.|.|-=|
T Consensus 168 ------~~El~~al~~~a~iiGINnRdL~tf--~vd~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~~G~davL 236 (254)
T PF00218_consen 168 ------EEELERALEAGADIIGINNRDLKTF--EVDLNRTEELAPLIPKDVIVISESGIKTPEDARRLARAGADAVL 236 (254)
T ss_dssp ------HHHHHHHHHTT-SEEEEESBCTTTC--CBHTHHHHHHHCHSHTTSEEEEESS-SSHHHHHHHCTTT-SEEE
T ss_pred ------HHHHHHHHHcCCCEEEEeCccccCc--ccChHHHHHHHhhCccceeEEeecCCCCHHHHHHHHHCCCCEEE
Confidence 2556778899999999999976433 344556677888888554 44555433 4677777777776544
No 229
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=83.80 E-value=9.3 Score=35.69 Aligned_cols=148 Identities=18% Similarity=0.219 Sum_probs=86.9
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCC---ceecCCcHHHHHHHhCCc-hHHHHHHHHHHcCCCE
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD---VYVSTGDWAEHLIRNGPS-AFKEYVEDCKQVGFDT 117 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~g---V~v~~GtlfE~a~~qg~~-~~~~yl~~~k~lGF~~ 117 (289)
.+-+.|..+| ||.+=+||+.+. |.+ .+-++.+.+.+ .... .|.-. -..+-. .-+.-++.+.+.|.+.
T Consensus 24 ~i~~~L~~~G--v~~IE~G~~~~~--~~~--~~~~~~~~~~~~~~~~~~--~~~~~-~~~~i~~~~~~~~~~a~~~g~~~ 94 (273)
T cd07941 24 RIARKLDELG--VDYIEGGWPGSN--PKD--TEFFARAKKLKLKHAKLA--AFGST-RRAGVKAEEDPNLQALLEAGTPV 94 (273)
T ss_pred HHHHHHHHcC--CCEEEecCCcCC--HHH--HHHHHHHHHcCCCCcEEE--EEecc-cccCCCccchHHHHHHHhCCCCE
Confidence 4455677777 899999986533 322 22223332322 2211 11100 001100 0124577788999999
Q ss_pred EEecCCcc--------cCC----hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHH
Q 022982 118 IELNVGSL--------EIP----EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVD 185 (289)
Q Consensus 118 IEISdGti--------~i~----~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~ 185 (289)
|-|...+- ..+ .+.-.++|+++++.|++|. ++... .. |. .. .+++
T Consensus 95 i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~--~~~~~-~~------d~--------~~------~~~~ 151 (273)
T cd07941 95 VTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVI--FDAEH-FF------DG--------YK------ANPE 151 (273)
T ss_pred EEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEE--EeEEe-cc------cc--------CC------CCHH
Confidence 99864432 122 2234678899999998652 22210 00 00 01 1588
Q ss_pred HHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHh
Q 022982 186 LLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIG 226 (289)
Q Consensus 186 ~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~ 226 (289)
.+++.+++..++|++.|. |.|..|...+..+.++++
T Consensus 152 ~~~~~~~~~~~~g~~~i~-----l~DT~G~~~P~~v~~lv~ 187 (273)
T cd07941 152 YALATLKAAAEAGADWLV-----LCDTNGGTLPHEIAEIVK 187 (273)
T ss_pred HHHHHHHHHHhCCCCEEE-----EecCCCCCCHHHHHHHHH
Confidence 889999999999999764 789999999999988885
No 230
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=83.62 E-value=13 Score=34.27 Aligned_cols=99 Identities=16% Similarity=0.201 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc-CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLE-IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~-i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 180 (289)
...+..+...+.|++.+=|-|=+-. .....-.++|+++++. .++-+..+. -..+
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~-----~~~pv~~~G------------Gi~s-------- 85 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAET-----VFIPLTVGG------------GIKS-------- 85 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHHh-----cCCCEEEEC------------CCCC--------
Confidence 4556666677899999988776644 2455556788888773 112221110 0111
Q ss_pred cccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecC
Q 022982 181 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT 238 (289)
Q Consensus 181 ~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklifEAP 238 (289)
++.+++.+++||+.|++ ++.... +.+++.++.++.|.+++++--.
T Consensus 86 -------~~d~~~~~~~Ga~~viv-gt~~~~-----~p~~~~~~~~~~~~~~iv~slD 130 (254)
T TIGR00735 86 -------IEDVDKLLRAGADKVSI-NTAAVK-----NPELIYELADRFGSQCIVVAID 130 (254)
T ss_pred -------HHHHHHHHHcCCCEEEE-ChhHhh-----ChHHHHHHHHHcCCCCEEEEEE
Confidence 57777888999999999 554544 2678899998888888887554
No 231
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=83.57 E-value=3.5 Score=39.49 Aligned_cols=40 Identities=15% Similarity=0.291 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc------CChhHHHHHHHHHHH
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLE------IPEETLLRYVRLVKS 141 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~------i~~~~r~~lI~~~~~ 141 (289)
..-++.+.+.+.|.|+||||.|..+ ++......+.+.+++
T Consensus 242 e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~ 287 (336)
T cd02932 242 DSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQ 287 (336)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHh
Confidence 3456666777889999999988542 223334566666666
No 232
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=83.41 E-value=29 Score=33.23 Aligned_cols=137 Identities=14% Similarity=0.138 Sum_probs=83.9
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHH----HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcc
Q 022982 104 KEYVEDCKQVGFDTIELNVGSLEIPEETL----LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTE 179 (289)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r----~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~ 179 (289)
-+.+..|-+.||+.|=+..-.+ |.++= .++++.++..|.-|--|+|.=- ..+-+...+.. . .
T Consensus 87 ~e~i~~ai~~GftSVMiDgS~l--p~eeNi~~T~~vv~~Ah~~gvsVEaElG~ig-g~e~~~~~~~~------~-----~ 152 (284)
T PRK12737 87 LDDIKKKVRAGIRSVMIDGSHL--SFEENIAIVKEVVEFCHRYDASVEAELGRLG-GQEDDLVVDEK------D-----A 152 (284)
T ss_pred HHHHHHHHHcCCCeEEecCCCC--CHHHHHHHHHHHHHHHHHcCCEEEEEEeecc-CccCCcccccc------c-----c
Confidence 3677888999999999976654 44443 3677788889999999999832 11101000000 0 0
Q ss_pred ccccHHHHHHHHHHHHHccCcEEEEec---cccccCCCCccHHHHHHHHhccCCCceEEecC-CchhHHHHHHHhC-CCc
Q 022982 180 YVEDVDLLIRRAERCLEAGADMIMIDS---DDVCKHADSLRADIIAKVIGRLGLEKTMFEAT-NPRTSEWFIRRYG-PKV 254 (289)
Q Consensus 180 ~~~~~~~~I~~~~~dLeAGA~~ViiEa---rGI~d~~G~~r~d~v~~ii~~l~~eklifEAP-~k~qQ~~~I~~fG-~~V 254 (289)
...||++..+.+++ -|+|.+-|== -|+|...-+++-+.+++|-+.++.--++==+. .|..|.-=.-++| ..|
T Consensus 153 ~~T~peeA~~Fv~~---TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~iPLVlHGgSG~~~e~~~kai~~Gi~Ki 229 (284)
T PRK12737 153 MYTNPDAAAEFVER---TGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVSIPLVLHGASGVPDEDVKKAISLGICKV 229 (284)
T ss_pred cCCCHHHHHHHHHH---hCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHCCCeEE
Confidence 01268777777764 6888776543 39999888899999999988765322322222 2333332223344 456
Q ss_pred ccc
Q 022982 255 NLF 257 (289)
Q Consensus 255 NLg 257 (289)
|++
T Consensus 230 Ni~ 232 (284)
T PRK12737 230 NVA 232 (284)
T ss_pred EeC
Confidence 665
No 233
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=83.40 E-value=14 Score=35.46 Aligned_cols=94 Identities=14% Similarity=0.156 Sum_probs=55.7
Q ss_pred HHHHHcCCCEEEecCCccc-------------CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccC
Q 022982 108 EDCKQVGFDTIELNVGSLE-------------IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (289)
Q Consensus 108 ~~~k~lGF~~IEISdGti~-------------i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 174 (289)
+.+.+.||+.|||+=|+=. -.++.-.++++.+++. .. +| +++|-.. |
T Consensus 84 ~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a-~d-~p-v~vKiR~---G-------------- 143 (321)
T PRK10415 84 RINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNA-VD-VP-VTLKIRT---G-------------- 143 (321)
T ss_pred HHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHh-cC-Cc-eEEEEEc---c--------------
Confidence 3446789999999999631 1144555667766553 11 12 5665421 1
Q ss_pred CCCccccccHHHHHHHHHHHHHccCcEEEEecc---ccccCCCCccHHHHHHHHhcc
Q 022982 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD---DVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 175 ~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar---GI~d~~G~~r~d~v~~ii~~l 228 (289)
|. .+..+.++.++..-++|++.|.+-+| +.|. |....+.+.++.+.+
T Consensus 144 -~~----~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~--G~a~~~~i~~ik~~~ 193 (321)
T PRK10415 144 -WA----PEHRNCVEIAQLAEDCGIQALTIHGRTRACLFN--GEAEYDSIRAVKQKV 193 (321)
T ss_pred -cc----CCcchHHHHHHHHHHhCCCEEEEecCccccccC--CCcChHHHHHHHHhc
Confidence 10 01234567777778999999999998 3443 333445666665544
No 234
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=83.28 E-value=25 Score=34.87 Aligned_cols=128 Identities=18% Similarity=0.229 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc--cCChhHHHHHHHHHHHc-CCccc
Q 022982 71 FIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL--EIPEETLLRYVRLVKSA-GLKAK 147 (289)
Q Consensus 71 ~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti--~i~~~~r~~lI~~~~~~-G~~v~ 147 (289)
.+.+-++.++++|+.+.+|- + ++..-.+..+.+.++|.|+|-+.-|+- ..+. .-.+.++++++. ++.+.
T Consensus 95 ~~~~~i~~a~~~G~~~~~g~-----~--s~~t~~e~~~~a~~~GaD~I~~~pg~~~~~~~~-~~~~~l~~l~~~~~iPI~ 166 (430)
T PRK07028 95 TIEDAVRAARKYGVRLMADL-----I--NVPDPVKRAVELEELGVDYINVHVGIDQQMLGK-DPLELLKEVSEEVSIPIA 166 (430)
T ss_pred HHHHHHHHHHHcCCEEEEEe-----c--CCCCHHHHHHHHHhcCCCEEEEEeccchhhcCC-ChHHHHHHHHhhCCCcEE
Confidence 36677788888887665541 1 111112234566778999997776642 1111 123456666552 12121
Q ss_pred ceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHH--HHHHHH
Q 022982 148 PKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRAD--IIAKVI 225 (289)
Q Consensus 148 ~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d--~v~~ii 225 (289)
...|+ + .+.+...+++||+.|++ ++.|+++. +++.- .+.+.+
T Consensus 167 a~GGI-------------------~---------------~~n~~~~l~aGAdgv~v-GsaI~~~~-d~~~~~~~l~~~i 210 (430)
T PRK07028 167 VAGGL-------------------D---------------AETAAKAVAAGADIVIV-GGNIIKSA-DVTEAARKIREAI 210 (430)
T ss_pred EECCC-------------------C---------------HHHHHHHHHcCCCEEEE-ChHHcCCC-CHHHHHHHHHHHH
Confidence 11122 1 36677889999998876 45688764 33322 233444
Q ss_pred hccCCCce--EEecCCchh
Q 022982 226 GRLGLEKT--MFEATNPRT 242 (289)
Q Consensus 226 ~~l~~ekl--ifEAP~k~q 242 (289)
++..+-|+ .|+.|.++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~ 229 (430)
T PRK07028 211 DSGKPVKIDKFKKSLDEEI 229 (430)
T ss_pred hccCCccccccccCCCHHH
Confidence 55444443 688887754
No 235
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=83.26 E-value=18 Score=34.14 Aligned_cols=148 Identities=16% Similarity=0.260 Sum_probs=92.3
Q ss_pred chhHHHHHHHhhcc-cccEEEecCcccc-ccChhHHHH-----------------HHHHHH--hCCceecCCcHHHHHHH
Q 022982 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHS-LMPKPFIEE-----------------VVKRAH--QHDVYVSTGDWAEHLIR 97 (289)
Q Consensus 39 g~~~~~DlLe~ag~-yID~lKfg~GTs~-l~p~~~l~e-----------------KI~l~~--~~gV~v~~GtlfE~a~~ 97 (289)
.+..+.+++..+-+ -+|++=+|+=.|= +.+-..+++ .++-.| ..++++..=|++...+.
T Consensus 22 ~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~ 101 (259)
T PF00290_consen 22 DLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMTYYNPIFQ 101 (259)
T ss_dssp SHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEeeccHHhc
Confidence 56677777776655 8999999975431 222122222 222222 34455555588888888
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCC
Q 022982 98 NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (289)
Q Consensus 98 qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 177 (289)
.| +++|++.|++.|++.+=| -+||.|+...+.+.++++|+...+=+...
T Consensus 102 ~G---~e~F~~~~~~aGvdGlIi----pDLP~ee~~~~~~~~~~~gl~~I~lv~p~------------------------ 150 (259)
T PF00290_consen 102 YG---IERFFKEAKEAGVDGLII----PDLPPEESEELREAAKKHGLDLIPLVAPT------------------------ 150 (259)
T ss_dssp H----HHHHHHHHHHHTEEEEEE----TTSBGGGHHHHHHHHHHTT-EEEEEEETT------------------------
T ss_pred cc---hHHHHHHHHHcCCCEEEE----cCCChHHHHHHHHHHHHcCCeEEEEECCC------------------------
Confidence 86 999999999999998877 46888999999999999998876644331
Q ss_pred ccccccHHHHHHHHHHHHHccCcEEEEecc-ccccCCCCccHHHHHHHHh
Q 022982 178 TEYVEDVDLLIRRAERCLEAGADMIMIDSD-DVCKHADSLRADIIAKVIG 226 (289)
Q Consensus 178 ~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-GI~d~~G~~r~d~v~~ii~ 226 (289)
+++++|+.+. +.+..+|=.=++ |++-....+.. .+.+.++
T Consensus 151 -----t~~~Ri~~i~---~~a~gFiY~vs~~GvTG~~~~~~~-~l~~~i~ 191 (259)
T PF00290_consen 151 -----TPEERIKKIA---KQASGFIYLVSRMGVTGSRTELPD-ELKEFIK 191 (259)
T ss_dssp -----S-HHHHHHHH---HH-SSEEEEESSSSSSSTTSSCHH-HHHHHHH
T ss_pred -----CCHHHHHHHH---HhCCcEEEeeccCCCCCCcccchH-HHHHHHH
Confidence 2555566554 444556665555 77776665543 3444444
No 236
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=83.23 E-value=16 Score=34.81 Aligned_cols=158 Identities=13% Similarity=0.074 Sum_probs=100.1
Q ss_pred HHHHHHhh-cccccEEEecCccccccChh-----------HHHHHHHHHHhCCceecCCc-----H-HHHHHHhCCchHH
Q 022982 43 LEDIFESM-GQFVDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVYVSTGD-----W-AEHLIRNGPSAFK 104 (289)
Q Consensus 43 ~~DlLe~a-g~yID~lKfg~GTs~l~p~~-----------~l~eKI~l~~~~gV~v~~Gt-----l-fE~a~~qg~~~~~ 104 (289)
++..+++. |-=.+.+.+-..+|-.+.+. .+++.+++++++|.. |.++ | .|-+-.-+++.+.
T Consensus 81 ie~a~~~~~~~~~~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~g~~-~~~~~~~~~~~~EDasr~~~~~l~ 159 (284)
T cd07942 81 IERTFEALRGAKKAIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKELAAK-YPETDWRFEYSPESFSDTELDFAL 159 (284)
T ss_pred HHHHHHHhCCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccc-ccCceEEEEECCccCCCCCHHHHH
Confidence 44445442 22223566666665444332 366788899999874 2110 1 2334344456788
Q ss_pred HHHHHHHHc---C---CCEEEecCCcccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCC
Q 022982 105 EYVEDCKQV---G---FDTIELNVGSLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (289)
Q Consensus 105 ~yl~~~k~l---G---F~~IEISdGti~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 177 (289)
++++.+.+. | .+.|=++|-.--..+.+-.++|+.+++. +-....+++..+
T Consensus 160 ~~~~~~~~~~~~g~~~~~~i~laDTvG~a~P~~v~~~~~~l~~~~~~~~~~~~~~H~----------------------- 216 (284)
T cd07942 160 EVCEAVIDVWQPTPENKIILNLPATVEVATPNVYADQIEWFCRNLSRRESVIISLHP----------------------- 216 (284)
T ss_pred HHHHHHHHhhcCCCCcceEEEccccccccCHHHHHHHHHHHHHhcCCCCCceEEEEe-----------------------
Confidence 888888887 5 4488899999888888888999998873 111112345433
Q ss_pred ccccccHHHHHHHHHHHHHccCcEEEEecc--ccccCCCCccHHHHHHHHhccC
Q 022982 178 TEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLG 229 (289)
Q Consensus 178 ~~~~~~~~~~I~~~~~dLeAGA~~ViiEar--GI~d~~G~~r~d~v~~ii~~l~ 229 (289)
=.|....+..+-..++|||++| ++- |+=+..||.-++.+-..+...+
T Consensus 217 ---Hnd~G~a~AN~laA~~aG~~~i--d~~~~g~GeRaGN~~~E~lv~~l~~~g 265 (284)
T cd07942 217 ---HNDRGTGVAAAELALLAGADRV--EGTLFGNGERTGNVDLVTLALNLYSQG 265 (284)
T ss_pred ---cCCCchHHHHHHHHHHhCCCEE--EeeCccCCccccchhHHHHHHHHHhcC
Confidence 1234445778888999999985 554 7755589998887776665544
No 237
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=83.22 E-value=23 Score=28.82 Aligned_cols=99 Identities=21% Similarity=0.375 Sum_probs=73.4
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhC--Ccee--cC-CcHHHHHHHhCCchHHHHHHHHHHcCCC
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYV--ST-GDWAEHLIRNGPSAFKEYVEDCKQVGFD 116 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~--gV~v--~~-GtlfE~a~~qg~~~~~~yl~~~k~lGF~ 116 (289)
..+...+....++..+=|++|...+.+ .+.+.++.+++. ++.+ .+ |..+ + ++.++.+.+.|++
T Consensus 33 ~~~~~~~~~~~~~~~i~~~ggep~~~~--~~~~~i~~~~~~~~~~~~~i~T~~~~~------~----~~~~~~l~~~g~~ 100 (204)
T cd01335 33 ILDIVLEAKERGVEVVILTGGEPLLYP--ELAELLRRLKKELPGFEISIETNGTLL------T----EELLKELKELGLD 100 (204)
T ss_pred HHHHHHHHHhcCceEEEEeCCcCCccH--hHHHHHHHHHhhCCCceEEEEcCcccC------C----HHHHHHHHhCCCc
Confidence 334445556678888889999999888 788999999988 6544 34 2222 2 5677788888999
Q ss_pred EEEecCCccc-----------CChhHHHHHHHHHHHcCCcccceeee
Q 022982 117 TIELNVGSLE-----------IPEETLLRYVRLVKSAGLKAKPKFAV 152 (289)
Q Consensus 117 ~IEISdGti~-----------i~~~~r~~lI~~~~~~G~~v~~E~g~ 152 (289)
.|.+|--+.+ .+.++..+.|+++++.|..+.+.+-+
T Consensus 101 ~i~i~le~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 147 (204)
T cd01335 101 GVGVSLDSGDEEVADKIRGSGESFKERLEALKELREAGLGLSTTLLV 147 (204)
T ss_pred eEEEEcccCCHHHHHHHhcCCcCHHHHHHHHHHHHHcCCCceEEEEE
Confidence 9999877653 34478888999999988887776655
No 238
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=83.00 E-value=13 Score=35.12 Aligned_cols=142 Identities=12% Similarity=0.124 Sum_probs=86.5
Q ss_pred HHHHHhhcccccEEEecCccccccCh--hHHHHHHHHHHhC----CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022982 44 EDIFESMGQFVDGLKFSGGSHSLMPK--PFIEEVVKRAHQH----DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (289)
Q Consensus 44 ~DlLe~ag~yID~lKfg~GTs~l~p~--~~l~eKI~l~~~~----gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (289)
+.|++.+| ||.+=+|+ .++-|+ +.+++..+...-. ++.+. .| ..+ +.-++.+++.|.+.
T Consensus 26 ~~L~~~~G--v~~IEvg~--~~~s~~e~~av~~~~~~~~~~~~~~~~~~~--a~-----~~~----~~~~~~A~~~g~~~ 90 (280)
T cd07945 26 KILLQELK--VDRIEVAS--ARVSEGEFEAVQKIIDWAAEEGLLDRIEVL--GF-----VDG----DKSVDWIKSAGAKV 90 (280)
T ss_pred HHHHHHhC--CCEEEecC--CCCCHHHHHHHHHHHHHhhhhccccCcEEE--Ee-----cCc----HHHHHHHHHCCCCE
Confidence 33457777 88888884 334442 3344444432211 22221 12 222 34588899999999
Q ss_pred EEecCCc------------ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHH
Q 022982 118 IELNVGS------------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVD 185 (289)
Q Consensus 118 IEISdGt------------i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~ 185 (289)
|-++-.+ .+=..+.-.++|+.+++.|++| .++..+ .+ .|++. +++
T Consensus 91 i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v--~~~~~d-~~--------------~~~r~------~~~ 147 (280)
T cd07945 91 LNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEV--NIYLED-WS--------------NGMRD------SPD 147 (280)
T ss_pred EEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEE--EEEEEe-CC--------------CCCcC------CHH
Confidence 9887532 1222223345688999998763 455532 10 02211 588
Q ss_pred HHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 186 LLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 186 ~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
.+++.+++..++||+.|- |.|..|-..+..+.++++.+
T Consensus 148 ~~~~~~~~~~~~G~~~i~-----l~DT~G~~~P~~v~~l~~~l 185 (280)
T cd07945 148 YVFQLVDFLSDLPIKRIM-----LPDTLGILSPFETYTYISDM 185 (280)
T ss_pred HHHHHHHHHHHcCCCEEE-----ecCCCCCCCHHHHHHHHHHH
Confidence 899999999999999764 67888888888887777654
No 239
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=82.87 E-value=5.1 Score=36.55 Aligned_cols=68 Identities=16% Similarity=0.288 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 181 (289)
...+..+.+.+-|+++|||.- ..+...+.|+++++.. |++-+ |+ |..++
T Consensus 21 ~a~~~~~al~~~Gi~~iEit~-----~t~~a~~~i~~l~~~~----~~~~v-------GA------GTVl~--------- 69 (204)
T TIGR01182 21 DALPLAKALIEGGLRVLEVTL-----RTPVALDAIRLLRKEV----PDALI-------GA------GTVLN--------- 69 (204)
T ss_pred HHHHHHHHHHHcCCCEEEEeC-----CCccHHHHHHHHHHHC----CCCEE-------EE------EeCCC---------
Confidence 455667888999999999976 4466778999998741 23222 10 12223
Q ss_pred ccHHHHHHHHHHHHHccCcEEEEec
Q 022982 182 EDVDLLIRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 182 ~~~~~~I~~~~~dLeAGA~~ViiEa 206 (289)
.+++++.++|||++++-=+
T Consensus 70 ------~~~a~~a~~aGA~FivsP~ 88 (204)
T TIGR01182 70 ------PEQLRQAVDAGAQFIVSPG 88 (204)
T ss_pred ------HHHHHHHHHcCCCEEECCC
Confidence 5788999999999997544
No 240
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=82.86 E-value=31 Score=33.38 Aligned_cols=114 Identities=18% Similarity=0.248 Sum_probs=77.1
Q ss_pred CccccccChhHHHHHHHHHHhCC--ceecCCcHHHHHHHhC--CchHHHHHHHHHHcCCCE-----EEecC----Ccc--
Q 022982 61 GGSHSLMPKPFIEEVVKRAHQHD--VYVSTGDWAEHLIRNG--PSAFKEYVEDCKQVGFDT-----IELNV----GSL-- 125 (289)
Q Consensus 61 ~GTs~l~p~~~l~eKI~l~~~~g--V~v~~GtlfE~a~~qg--~~~~~~yl~~~k~lGF~~-----IEISd----Gti-- 125 (289)
.|...-.+-+.+.+.++..+++. +.++.=+..|+..... ....++-++.+|+.|++. +|+-+ ..+
T Consensus 103 ~G~~p~~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~ 182 (351)
T TIGR03700 103 GGLHPNLPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICP 182 (351)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCC
Confidence 55555556678899999999874 5555446788775442 124688899999999874 55533 111
Q ss_pred -cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCc
Q 022982 126 -EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (289)
Q Consensus 126 -~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~ 200 (289)
..+.++|.+.|+.+++.|+++.+= ...+..| +++++++.+..--+.+.+
T Consensus 183 ~~~~~~~~l~~i~~a~~~Gi~~~sg--~i~GlgE------------------------t~edrv~~l~~Lr~l~~~ 232 (351)
T TIGR03700 183 EKISAERWLEIHRTAHELGLKTNAT--MLYGHIE------------------------TPAHRVDHMLRLRELQDE 232 (351)
T ss_pred CCCCHHHHHHHHHHHHHcCCCcceE--EEeeCCC------------------------CHHHHHHHHHHHHHhhHh
Confidence 467788899999999999997663 3333221 366777777766666664
No 241
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=82.58 E-value=4.4 Score=36.71 Aligned_cols=69 Identities=20% Similarity=0.321 Sum_probs=46.1
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 180 (289)
+...+..+.+.+-|+.+|||.--+ ....+.|+.+++. .|++-+ |+ |..++
T Consensus 20 ~~a~~~~~al~~gGi~~iEiT~~t-----~~a~~~I~~l~~~----~p~~~v-------GA------GTV~~-------- 69 (196)
T PF01081_consen 20 EDAVPIAEALIEGGIRAIEITLRT-----PNALEAIEALRKE----FPDLLV-------GA------GTVLT-------- 69 (196)
T ss_dssp GGHHHHHHHHHHTT--EEEEETTS-----TTHHHHHHHHHHH----HTTSEE-------EE------ES--S--------
T ss_pred HHHHHHHHHHHHCCCCEEEEecCC-----ccHHHHHHHHHHH----CCCCee-------EE------EeccC--------
Confidence 456677788999999999997654 5567899988874 234333 10 12222
Q ss_pred cccHHHHHHHHHHHHHccCcEEEEec
Q 022982 181 VEDVDLLIRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 181 ~~~~~~~I~~~~~dLeAGA~~ViiEa 206 (289)
.+++++.++|||++++-=+
T Consensus 70 -------~e~a~~a~~aGA~FivSP~ 88 (196)
T PF01081_consen 70 -------AEQAEAAIAAGAQFIVSPG 88 (196)
T ss_dssp -------HHHHHHHHHHT-SEEEESS
T ss_pred -------HHHHHHHHHcCCCEEECCC
Confidence 6899999999999999765
No 242
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=82.58 E-value=5.6 Score=37.07 Aligned_cols=68 Identities=16% Similarity=0.062 Sum_probs=53.4
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccH
Q 022982 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184 (289)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~ 184 (289)
...+.+...|||.|-|.-=--.++.++...+|+.++..|..++--+-- .|
T Consensus 24 ~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~----------~~-------------------- 73 (249)
T TIGR03239 24 ITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPW----------NE-------------------- 73 (249)
T ss_pred HHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCC----------CC--------------------
Confidence 455666789999999999999999999999999999888765433311 11
Q ss_pred HHHHHHHHHHHHccCcEEEEe
Q 022982 185 DLLIRRAERCLEAGADMIMID 205 (289)
Q Consensus 185 ~~~I~~~~~dLeAGA~~ViiE 205 (289)
-..+++.||+||+-||+=
T Consensus 74 ---~~~i~r~LD~Ga~gIivP 91 (249)
T TIGR03239 74 ---PVIIKRLLDIGFYNFLIP 91 (249)
T ss_pred ---HHHHHHHhcCCCCEEEec
Confidence 256788999999999973
No 243
>PRK08445 hypothetical protein; Provisional
Probab=82.58 E-value=30 Score=33.73 Aligned_cols=101 Identities=16% Similarity=0.223 Sum_probs=73.0
Q ss_pred hhcccccEEEecCccccccChhHHHHHHHHHHhCC--ceecC--CcHHHHHHHhCCchHHHHHHHHHHcCCC-----EEE
Q 022982 49 SMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD--VYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFD-----TIE 119 (289)
Q Consensus 49 ~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~g--V~v~~--GtlfE~a~~qg~~~~~~yl~~~k~lGF~-----~IE 119 (289)
......+-+=+.+|-..-++.+.+.+.++..+++. +.+.. -+=..++...+.-..++-++..|+.|.+ .+|
T Consensus 85 a~~~g~~~i~~~gg~~~~~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAGl~~~~g~glE 164 (348)
T PRK08445 85 LLAIGGTQILFQGGVHPKLKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKEVLERLQAKGLSSIPGAGAE 164 (348)
T ss_pred HHHcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHHHHHHHHHcCCCCCCCCcee
Confidence 34445677778888888888889999999888875 54432 2223434332312458999999999998 278
Q ss_pred ecCCc----c---cCChhHHHHHHHHHHHcCCcccce
Q 022982 120 LNVGS----L---EIPEETLLRYVRLVKSAGLKAKPK 149 (289)
Q Consensus 120 ISdGt----i---~i~~~~r~~lI~~~~~~G~~v~~E 149 (289)
+++.. + ..+.++|.+.++.+++.|+++-+=
T Consensus 165 ~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi~~~sg 201 (348)
T PRK08445 165 ILSDRVRDIIAPKKLDSDRWLEVHRQAHLIGMKSTAT 201 (348)
T ss_pred eCCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCeeeeE
Confidence 66642 2 678889999999999999997774
No 244
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=82.51 E-value=5.5 Score=34.09 Aligned_cols=94 Identities=20% Similarity=0.308 Sum_probs=53.3
Q ss_pred chhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecC-CcHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022982 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~-GtlfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (289)
|.+-+.-+|+.+|-= .+=+|- -.| .++-++.++++++.+-. ..+. .+.-..+++..+.+++.|...
T Consensus 17 Gk~iv~~~l~~~Gfe--Vi~LG~----~v~---~e~~v~aa~~~~adiVglS~l~----~~~~~~~~~~~~~l~~~gl~~ 83 (134)
T TIGR01501 17 GNKILDHAFTNAGFN--VVNLGV----LSP---QEEFIKAAIETKADAILVSSLY----GHGEIDCKGLRQKCDEAGLEG 83 (134)
T ss_pred hHHHHHHHHHHCCCE--EEECCC----CCC---HHHHHHHHHHcCCCEEEEeccc----ccCHHHHHHHHHHHHHCCCCC
Confidence 445566666666632 333342 122 45566666777664422 2221 111113566777778887743
Q ss_pred EEe-cCCcccCChhHHHHHHHHHHHcCCc
Q 022982 118 IEL-NVGSLEIPEETLLRYVRLVKSAGLK 145 (289)
Q Consensus 118 IEI-SdGti~i~~~~r~~lI~~~~~~G~~ 145 (289)
+=| =-|.+.+|+++.....+++++.||.
T Consensus 84 ~~vivGG~~vi~~~d~~~~~~~l~~~Gv~ 112 (134)
T TIGR01501 84 ILLYVGGNLVVGKQDFPDVEKRFKEMGFD 112 (134)
T ss_pred CEEEecCCcCcChhhhHHHHHHHHHcCCC
Confidence 333 6777788888877777788887654
No 245
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=82.41 E-value=13 Score=38.42 Aligned_cols=119 Identities=15% Similarity=0.148 Sum_probs=87.6
Q ss_pred HHHHHHHHhCCceecC-C-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccccee
Q 022982 73 EEVVKRAHQHDVYVST-G-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 150 (289)
Q Consensus 73 ~eKI~l~~~~gV~v~~-G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~ 150 (289)
.+-+++++++|..|.. . .||+ ++.-+|+.+.++++.+.+.|-+.|=|.|-.--+.+.+-.++|+.++++ +. .+.+
T Consensus 125 ~~~v~~ak~~g~~V~~~~e~f~D-~~r~~~~~l~~~~~~a~~aGad~i~i~DTvG~~~P~~v~~li~~l~~~-~~-~~~i 201 (526)
T TIGR00977 125 YDTVAYLKRQGDEVIYDAEHFFD-GYKANPEYALATLATAQQAGADWLVLCDTNGGTLPHEISEITTKVKRS-LK-QPQL 201 (526)
T ss_pred HHHHHHHHHcCCeEEEEeeeeee-cccCCHHHHHHHHHHHHhCCCCeEEEecCCCCcCHHHHHHHHHHHHHh-CC-CCEE
Confidence 4568899999998764 2 3533 334566789999999999999999999998888999999999999874 22 2335
Q ss_pred eeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEecc--ccccCCCCccHHHHH
Q 022982 151 AVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIA 222 (289)
Q Consensus 151 g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar--GI~d~~G~~r~d~v~ 222 (289)
++.+. . |....+-.....++|||+. ||+- ||=+..||.....+.
T Consensus 202 ~vH~H-N-------------------------D~GlAvANslaAv~AGA~~--Vd~TinGiGERaGNa~Le~v~ 247 (526)
T TIGR00977 202 GIHAH-N-------------------------DSGTAVANSLLAVEAGATM--VQGTINGYGERCGNANLCSLI 247 (526)
T ss_pred EEEEC-C-------------------------CCChHHHHHHHHHHhCCCE--EEEecccccCccCCCcHHHHH
Confidence 55431 1 1233367777899999997 5664 888888887765543
No 246
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=82.34 E-value=47 Score=31.68 Aligned_cols=136 Identities=15% Similarity=0.227 Sum_probs=83.3
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhH--HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 022982 105 EYVEDCKQVGFDTIELNVGSLEIPEET--LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (289)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~--r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 182 (289)
+.+..|-+.||+.|=|....+++.+-- =.++++.++..|.-|--|+|.=-+ .+|... . . .....
T Consensus 83 ~~i~~ai~~GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g------~e~~~~----~--~--~~~~T 148 (276)
T cd00947 83 ELIKRAIRAGFSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGG------EEDGVV----G--D--EGLLT 148 (276)
T ss_pred HHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecC------ccCCcc----c--c--cccCC
Confidence 556677899999999987665443322 246788889999999999998321 112100 0 0 01122
Q ss_pred cHHHHHHHHHHHHHccCcEEEEec---cccccC-CCCccHHHHHHHHhccCCCceEEecC-Cc-hhHHHHHHHhCCCccc
Q 022982 183 DVDLLIRRAERCLEAGADMIMIDS---DDVCKH-ADSLRADIIAKVIGRLGLEKTMFEAT-NP-RTSEWFIRRYGPKVNL 256 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAGA~~ViiEa---rGI~d~-~G~~r~d~v~~ii~~l~~eklifEAP-~k-~qQ~~~I~~fG~~VNL 256 (289)
||++..+.+++ -|+|.+-+=- -|+|.. .-+++.+++.+|-+.++.--++==+. .+ +|....|+.==.+||+
T Consensus 149 ~pe~a~~Fv~~---TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi 225 (276)
T cd00947 149 DPEEAEEFVEE---TGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERVNVPLVLHGGSGIPDEQIRKAIKLGVCKINI 225 (276)
T ss_pred CHHHHHHHHHH---HCCCEEEeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEe
Confidence 57666655553 4888776643 389988 77899999999998775333333222 23 3344444432345776
Q ss_pred c
Q 022982 257 F 257 (289)
Q Consensus 257 g 257 (289)
+
T Consensus 226 ~ 226 (276)
T cd00947 226 N 226 (276)
T ss_pred C
Confidence 5
No 247
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=82.31 E-value=2.2 Score=42.22 Aligned_cols=157 Identities=17% Similarity=0.130 Sum_probs=100.1
Q ss_pred CCCCCCCCCceeEecCCCCCCCchhHHHHHHHh----hcccccEEEecCccccccChhHHHHHHHHHHhCCc-eecC-Cc
Q 022982 17 RAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFES----MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVST-GD 90 (289)
Q Consensus 17 R~~KPR~~GlT~V~DkGl~~~~g~~~~~DlLe~----ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV-~v~~-Gt 90 (289)
|..|....++|.|.+-.+ .+.++... ||=|.+- +-...++++++.++++++-+.+.|+ .+.. ||
T Consensus 46 r~~~~~~~~vtyv~n~~i-------n~TN~C~~~C~fCaF~~~~---~~~~~y~Ls~eeI~~~~~~~~~~G~~Evli~gG 115 (370)
T COG1060 46 RRRKRVGDGVTYVVNRNI-------NYTNICVNDCTFCAFYRKP---GDPKAYTLSPEEILEEVREAVKRGITEVLIVGG 115 (370)
T ss_pred HHhhccCCcEEEEEeecC-------CcchhhcCCCCccccccCC---CCccccccCHHHHHHHHHHHHHcCCeEEEEecC
Confidence 446677789999999888 33344443 3334443 3335577888889999999999999 4543 43
Q ss_pred --------HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCc
Q 022982 91 --------WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSD 162 (289)
Q Consensus 91 --------lfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~ 162 (289)
|+|-++.. --++|. .+.-.+|+..||.--+.......+ +.+++++++|+-..|+.|-.-...+|
T Consensus 116 ~~p~~~~~y~~~~~~~---ik~~~p-~~~i~a~s~~ei~~~~~~~~~s~~-E~l~~Lk~aGldsmpg~~aeil~e~v--- 187 (370)
T COG1060 116 EHPELSLEYYEELFRT---IKEEFP-DLHIHALSAGEILFLAREGGLSYE-EVLKRLKEAGLDSMPGGGAEILSEEV--- 187 (370)
T ss_pred cCCCcchHHHHHHHHH---HHHhCc-chhhcccCHHHhHHHHhccCCCHH-HHHHHHHHcCCCcCcCcceeechHHH---
Confidence 23333222 111233 344488998888766655444443 56788899999999988753211111
Q ss_pred cccccccccccCCCCccccccHHHHHHHHHHHHHccCcEE
Q 022982 163 RDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMI 202 (289)
Q Consensus 163 ~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~V 202 (289)
...+.|.+. ++++|++.+++.-++|-..+
T Consensus 188 -----r~~~~p~K~------~~~~wle~~~~Ah~lGI~~t 216 (370)
T COG1060 188 -----RKIHCPPKK------SPEEWLEIHERAHRLGIPTT 216 (370)
T ss_pred -----HHhhCCCCC------CHHHHHHHHHHHHHcCCCcc
Confidence 112234444 69999999999999997754
No 248
>smart00642 Aamy Alpha-amylase domain.
Probab=82.26 E-value=3.4 Score=36.02 Aligned_cols=49 Identities=18% Similarity=0.169 Sum_probs=36.8
Q ss_pred HHHHHHHcCCCEEEecCCcc-----------------cC-----ChhHHHHHHHHHHHcCCcccceeeeec
Q 022982 106 YVEDCKQVGFDTIELNVGSL-----------------EI-----PEETLLRYVRLVKSAGLKAKPKFAVMF 154 (289)
Q Consensus 106 yl~~~k~lGF~~IEISdGti-----------------~i-----~~~~r~~lI~~~~~~G~~v~~E~g~k~ 154 (289)
-+.+++++||++|.++-=+- .+ +.++..++|+.++++|++|.-.+-...
T Consensus 24 ~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH 94 (166)
T smart00642 24 KLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINH 94 (166)
T ss_pred HHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 35567889999998764211 11 238899999999999999999887743
No 249
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=82.26 E-value=16 Score=36.50 Aligned_cols=38 Identities=24% Similarity=0.487 Sum_probs=25.1
Q ss_pred HHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 188 IRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 188 I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
.+.++..+++||+.+++ +|.||.+.. ..+.++++.+.+
T Consensus 341 ~eti~~l~~aGADivVV-GsaIf~a~D--p~~aak~l~~~i 378 (391)
T PRK13307 341 VENVEEALKAGADILVV-GRAITKSKD--VRRAAEDFLNKL 378 (391)
T ss_pred HHHHHHHHHcCCCEEEE-eHHHhCCCC--HHHHHHHHHHhh
Confidence 35577788999997766 677997653 344455555443
No 250
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=82.19 E-value=2.4 Score=41.12 Aligned_cols=119 Identities=20% Similarity=0.310 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHhC-----CceecCCcHHHHHHHhCCchHHH---HHHHHHHcCCCEEEecCCcccCC-----hhHHHHHH
Q 022982 70 PFIEEVVKRAHQH-----DVYVSTGDWAEHLIRNGPSAFKE---YVEDCKQVGFDTIELNVGSLEIP-----EETLLRYV 136 (289)
Q Consensus 70 ~~l~eKI~l~~~~-----gV~v~~GtlfE~a~~qg~~~~~~---yl~~~k~lGF~~IEISdGti~i~-----~~~r~~lI 136 (289)
..+.|.|+-.|+. +|++++-.+.+- | ...++ +.+.+.+.|+|.|+||.|+...+ +.-...+.
T Consensus 193 Rf~~eii~~ir~~~~~~v~vRis~~d~~~~----G-~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~ 267 (337)
T PRK13523 193 RFLREIIDAVKEVWDGPLFVRISASDYHPG----G-LTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFA 267 (337)
T ss_pred HHHHHHHHHHHHhcCCCeEEEecccccCCC----C-CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHH
Confidence 4556666666664 345554323221 2 13444 44555566999999999985321 22234566
Q ss_pred HHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHcc-CcEEEEeccccccCCCC
Q 022982 137 RLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG-ADMIMIDSDDVCKHADS 215 (289)
Q Consensus 137 ~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAG-A~~ViiEarGI~d~~G~ 215 (289)
+.+++. .+ +|=+++ | .+. | .+.+++.|+.| ||.|++ +|++.-
T Consensus 268 ~~ik~~-~~-ipVi~~-------G--------~i~-----------~----~~~a~~~l~~g~~D~V~~-gR~~ia---- 310 (337)
T PRK13523 268 EHIREH-AN-IATGAV-------G--------LIT-----------S----GAQAEEILQNNRADLIFI-GRELLR---- 310 (337)
T ss_pred HHHHhh-cC-CcEEEe-------C--------CCC-----------C----HHHHHHHHHcCCCChHHh-hHHHHh----
Confidence 666663 11 121111 1 111 1 36677889887 899877 554332
Q ss_pred ccHHHHHHHHhccCCC
Q 022982 216 LRADIIAKVIGRLGLE 231 (289)
Q Consensus 216 ~r~d~v~~ii~~l~~e 231 (289)
+++++.++.+.+..+
T Consensus 311 -dP~~~~k~~~~~~~~ 325 (337)
T PRK13523 311 -NPYFPRIAAKELGFE 325 (337)
T ss_pred -CccHHHHHHHHcCCC
Confidence 246677777666643
No 251
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=82.01 E-value=17 Score=34.71 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=18.5
Q ss_pred cHHHHHHHHHHHHHccCcEEEEe
Q 022982 183 DVDLLIRRAERCLEAGADMIMID 205 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAGA~~ViiE 205 (289)
++++.++.++..-++|.++|-+=
T Consensus 239 ~~~e~~~ia~~Le~~gvd~iev~ 261 (336)
T cd02932 239 DLEDSVELAKALKELGVDLIDVS 261 (336)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEC
Confidence 57888888888778999988663
No 252
>PRK05927 hypothetical protein; Provisional
Probab=82.00 E-value=35 Score=33.38 Aligned_cols=89 Identities=15% Similarity=0.241 Sum_probs=65.5
Q ss_pred ecCccccccChhHHHHHHHHHHhC--CceecCCcHHHHHHH---hCCchHHHHHHHHHHcCCC-----EEEecCCcc---
Q 022982 59 FSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIR---NGPSAFKEYVEDCKQVGFD-----TIELNVGSL--- 125 (289)
Q Consensus 59 fg~GTs~l~p~~~l~eKI~l~~~~--gV~v~~GtlfE~a~~---qg~~~~~~yl~~~k~lGF~-----~IEISdGti--- 125 (289)
|..|-..=.+-+.+.+-++..|+. ++.+..=+-.|+++. -| -..++.++..|+.|.+ ..|+++..+
T Consensus 98 i~gG~~p~~~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G-~~~~e~l~~Lk~aGl~~l~g~~~Et~~~~~~~~ 176 (350)
T PRK05927 98 LQGGVHPQLGIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSG-ISTEQALERLWDAGQRTIPGGGAEILSERVRKI 176 (350)
T ss_pred EeCCCCCCCCHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcC-CCHHHHHHHHHHcCcccCCCCCchhCCHHHhhc
Confidence 556666556667788888888864 454443245555522 23 4689999999999998 899998544
Q ss_pred ----cCChhHHHHHHHHHHHcCCcccc
Q 022982 126 ----EIPEETLLRYVRLVKSAGLKAKP 148 (289)
Q Consensus 126 ----~i~~~~r~~lI~~~~~~G~~v~~ 148 (289)
..+.++|++.|+.|++.|+++-+
T Consensus 177 ~~p~k~~~~~rl~~i~~A~~lGi~~~s 203 (350)
T PRK05927 177 ISPKKMGPDGWIQFHKLAHRLGFRSTA 203 (350)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCcCc
Confidence 56779999999999999998777
No 253
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=81.90 E-value=38 Score=34.39 Aligned_cols=120 Identities=12% Similarity=0.158 Sum_probs=74.5
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhCC-ceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-----
Q 022982 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-VYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL----- 125 (289)
Q Consensus 54 ID~lKfg~GTs~l~p~~~l~eKI~l~~~~g-V~v~~G--tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti----- 125 (289)
+..+-|.-.+..+ +++.+++..+...+.| +.+.-+ +=.... ..+ ++.++.+++.|+..|.+.--|.
T Consensus 240 v~~~~~~Dd~f~~-~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i-~~d----~ell~~l~~aG~~~v~iGiES~~~~~L 313 (497)
T TIGR02026 240 VGFFILADEEPTI-NRKKFQEFCEEIIARNPISVTWGINTRVTDI-VRD----ADILHLYRRAGLVHISLGTEAAAQATL 313 (497)
T ss_pred CCEEEEEeccccc-CHHHHHHHHHHHHhcCCCCeEEEEecccccc-cCC----HHHHHHHHHhCCcEEEEccccCCHHHH
Confidence 4556666555544 4445666666666655 332211 111111 111 5788999999999999854443
Q ss_pred -----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCc
Q 022982 126 -----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (289)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~ 200 (289)
..+.++-.+.|+.++++|+.+...|=+ +. |. ++.+++.+.++..++.+.+
T Consensus 314 ~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~--G~----------------P~-------et~e~~~~t~~~~~~l~~~ 368 (497)
T TIGR02026 314 DHFRKGTTTSTNKEAIRLLRQHNILSEAQFIT--GF----------------EN-------ETDETFEETYRQLLDWDPD 368 (497)
T ss_pred HHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEE--EC----------------CC-------CCHHHHHHHHHHHHHcCCC
Confidence 345677789999999999986544333 21 00 1477778888888888988
Q ss_pred EEEE
Q 022982 201 MIMI 204 (289)
Q Consensus 201 ~Vii 204 (289)
.+.+
T Consensus 369 ~~~~ 372 (497)
T TIGR02026 369 QANW 372 (497)
T ss_pred ceEE
Confidence 7665
No 254
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=81.87 E-value=11 Score=34.02 Aligned_cols=96 Identities=20% Similarity=0.306 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHcCCC---EEEec-CCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCC
Q 022982 102 AFKEYVEDCKQVGFD---TIELN-VGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~---~IEIS-dGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 177 (289)
...++.+.+.+.|++ .+.+| +|+- . ..-..+|+++++. ++++--. .+ .
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~--~-~~~~~~i~~i~~~-------~~~pv~~-----~G-----G-------- 79 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEG--R-ETMLDVVERVAEE-------VFIPLTV-----GG-----G-------- 79 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCccccc--C-cccHHHHHHHHHh-------CCCCEEE-----eC-----C--------
Confidence 567788888899999 55666 3322 2 2234788888773 2211000 00 0
Q ss_pred ccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecC
Q 022982 178 TEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT 238 (289)
Q Consensus 178 ~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklifEAP 238 (289)
+.+ .+.+++.+++||+.|++ +++++. +.+.+.++++.++-+++++--.
T Consensus 80 ---I~s----~~d~~~~l~~G~~~v~i-g~~~~~-----~p~~~~~i~~~~~~~~i~~~ld 127 (243)
T cd04731 80 ---IRS----LEDARRLLRAGADKVSI-NSAAVE-----NPELIREIAKRFGSQCVVVSID 127 (243)
T ss_pred ---CCC----HHHHHHHHHcCCceEEE-Cchhhh-----ChHHHHHHHHHcCCCCEEEEEE
Confidence 111 46667777899999988 566664 3677888888887778885543
No 255
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=81.52 E-value=20 Score=34.48 Aligned_cols=75 Identities=16% Similarity=0.204 Sum_probs=46.8
Q ss_pred HHHHHcCCCEEEecCCcc-------------cCChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCcccccccccccc
Q 022982 108 EDCKQVGFDTIELNVGSL-------------EIPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVAR 173 (289)
Q Consensus 108 ~~~k~lGF~~IEISdGti-------------~i~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~~evg~~~d~~~~~~~~~ 173 (289)
+.+.+.|||.|||+-|.- .=.++.-.++++.+++. .. -+| +++|... |
T Consensus 82 ~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~-~~~~~p-VsvKiR~---g------------- 143 (312)
T PRK10550 82 ARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREA-VPAHLP-VTVKVRL---G------------- 143 (312)
T ss_pred HHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHh-cCCCcc-eEEEEEC---C-------------
Confidence 455778999999997772 12333444556666553 10 022 6666432 1
Q ss_pred CCCCccccccHHHHHHHHHHHHHccCcEEEEecc
Q 022982 174 APRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 174 ~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
| .+.++.++.++..-++|++.|.|=+|
T Consensus 144 --~-----~~~~~~~~~a~~l~~~Gvd~i~Vh~R 170 (312)
T PRK10550 144 --W-----DSGERKFEIADAVQQAGATELVVHGR 170 (312)
T ss_pred --C-----CCchHHHHHHHHHHhcCCCEEEECCC
Confidence 1 12334577888888999999999998
No 256
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=81.49 E-value=17 Score=33.62 Aligned_cols=143 Identities=15% Similarity=0.254 Sum_probs=75.2
Q ss_pred ecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccCh---hHHHHHHHHHHhCCce----ecCCcHHHHHHHhCCch
Q 022982 30 RSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPK---PFIEEVVKRAHQHDVY----VSTGDWAEHLIRNGPSA 102 (289)
Q Consensus 30 ~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~---~~l~eKI~l~~~~gV~----v~~GtlfE~a~~qg~~~ 102 (289)
+|-+|=+..+.++++.+.+.-+++| .+..| +.+.+-|+.+|++|+. +.|+|-+|.
T Consensus 62 ~DvHLMv~~P~~~i~~~~~aGad~i----------t~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~-------- 123 (229)
T PRK09722 62 LDVHLMVTDPQDYIDQLADAGADFI----------TLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVES-------- 123 (229)
T ss_pred eEEEEEecCHHHHHHHHHHcCCCEE----------EECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHH--------
Confidence 4445433323446666666655554 23444 2477888999998874 557886654
Q ss_pred HHHHHHHHHHcCCCEEEecCCcc--cCChhH--HH-HHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCC
Q 022982 103 FKEYVEDCKQVGFDTIELNVGSL--EIPEET--LL-RYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (289)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti--~i~~~~--r~-~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 177 (289)
++.|+..+..+=+=.| .-|+- ..-++. |. ++-+...++|+.+ .+.+ |. . +.
T Consensus 124 l~~~l~~vD~VLvMsV--~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~--~IeV-----------DG---G-I~----- 179 (229)
T PRK09722 124 IKYYIHLLDKITVMTV--DPGFAGQPFIPEMLDKIAELKALRERNGLEY--LIEV-----------DG---S-CN----- 179 (229)
T ss_pred HHHHHHhcCEEEEEEE--cCCCcchhccHHHHHHHHHHHHHHHhcCCCe--EEEE-----------EC---C-CC-----
Confidence 3456655543222222 22322 222222 22 2222223444432 2233 10 0 01
Q ss_pred ccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHH
Q 022982 178 TEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVI 225 (289)
Q Consensus 178 ~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii 225 (289)
-+.+....+||||.+++=+.+||.++.+ ..+.++.+-
T Consensus 180 ----------~~~i~~~~~aGad~~V~Gss~iF~~~~d-~~~~i~~l~ 216 (229)
T PRK09722 180 ----------QKTYEKLMEAGADVFIVGTSGLFNLDED-IDEAWDIMT 216 (229)
T ss_pred ----------HHHHHHHHHcCCCEEEEChHHHcCCCCC-HHHHHHHHH
Confidence 4677888899999999966679974333 455555553
No 257
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=81.45 E-value=11 Score=34.64 Aligned_cols=92 Identities=11% Similarity=0.180 Sum_probs=58.5
Q ss_pred HHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHH
Q 022982 106 YVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVD 185 (289)
Q Consensus 106 yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~ 185 (289)
+.+...+.|++.+=|=|=.-......-..+|+++.+.-+. | +-+ +. -+.+
T Consensus 35 ~a~~~~~~ga~~lhivDLd~a~~~~~n~~~i~~i~~~~~~--~-v~v--GG------------GIrs------------- 84 (232)
T PRK13586 35 IASKLYNEGYTRIHVVDLDAAEGVGNNEMYIKEISKIGFD--W-IQV--GG------------GIRD------------- 84 (232)
T ss_pred HHHHHHHCCCCEEEEEECCCcCCCcchHHHHHHHHhhCCC--C-EEE--eC------------CcCC-------------
Confidence 3344456889888776544333555556888888773221 1 222 10 1111
Q ss_pred HHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEE
Q 022982 186 LLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMF 235 (289)
Q Consensus 186 ~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklif 235 (289)
++.+++.|++||++|+|=+.-+. ..++++++++++|.+++++
T Consensus 85 --~e~~~~~l~~Ga~kvvigt~a~~------~p~~~~~~~~~~g~~~ivv 126 (232)
T PRK13586 85 --IEKAKRLLSLDVNALVFSTIVFT------NFNLFHDIVREIGSNRVLV 126 (232)
T ss_pred --HHHHHHHHHCCCCEEEECchhhC------CHHHHHHHHHHhCCCCEEE
Confidence 57888899999999998655333 3578888888888777774
No 258
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=81.37 E-value=16 Score=33.92 Aligned_cols=79 Identities=5% Similarity=0.007 Sum_probs=44.3
Q ss_pred CCcccccccccCCCCCCCCCCCCCCceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccCh--hHHHHHHHH
Q 022982 1 MSGYYYGWKSFDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPK--PFIEEVVKR 78 (289)
Q Consensus 1 ~~~~~~~~~~f~~~~~R~~KPR~~GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~--~~l~eKI~l 78 (289)
|-|-|--+-+|.|---+.-++ ++.+|-+|=+..+.++++.+.+.-+++|-+ ..| ..+.+-++.
T Consensus 47 MDG~FVPNitfGp~~i~~i~~-----~~~~DvHLMv~~P~~~i~~~~~aGad~It~----------H~Ea~~~~~~~l~~ 111 (228)
T PRK08091 47 ADGQFSPFFTVGAIAIKQFPT-----HCFKDVHLMVRDQFEVAKACVAAGADIVTL----------QVEQTHDLALTIEW 111 (228)
T ss_pred cCCCcCCccccCHHHHHHhCC-----CCCEEEEeccCCHHHHHHHHHHhCCCEEEE----------cccCcccHHHHHHH
Confidence 345555555665422222211 345677775553455677776666666532 222 247788888
Q ss_pred HHhCCc------eecCCcHHHH
Q 022982 79 AHQHDV------YVSTGDWAEH 94 (289)
Q Consensus 79 ~~~~gV------~v~~GtlfE~ 94 (289)
.|++|+ -+.|+|-+|.
T Consensus 112 Ik~~g~~~kaGlalnP~Tp~~~ 133 (228)
T PRK08091 112 LAKQKTTVLIGLCLCPETPISL 133 (228)
T ss_pred HHHCCCCceEEEEECCCCCHHH
Confidence 888876 5567776553
No 259
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=81.21 E-value=20 Score=34.36 Aligned_cols=133 Identities=20% Similarity=0.312 Sum_probs=78.7
Q ss_pred HHHHHHHhhccc-cc-EEE-ecCccc---cccChhHHHHHHHHHHhCC-c-eecCCcHHHHHHHhCCch-HHHHHHHHHH
Q 022982 42 VLEDIFESMGQF-VD-GLK-FSGGSH---SLMPKPFIEEVVKRAHQHD-V-YVSTGDWAEHLIRNGPSA-FKEYVEDCKQ 112 (289)
Q Consensus 42 ~~~DlLe~ag~y-ID-~lK-fg~GTs---~l~p~~~l~eKI~l~~~~g-V-~v~~GtlfE~a~~qg~~~-~~~yl~~~k~ 112 (289)
+++.+++..+.. -+ .+| |--|++ ...|.+.+++..+.+++.+ + .+...+ .|+. -++.++.+++
T Consensus 54 ~i~~~~~~~~~~~~~~~ikif~sgsf~D~~~~~~~~~~~i~~~l~~~~~~~~i~~es--------rpd~i~~e~L~~l~~ 125 (313)
T TIGR01210 54 QFDEAIEKYKEKIKDFVIKIFTSGSFLDDREVPKETRNYIFEKIAQRDNLKEVVVES--------RPEFIDEEKLEELRK 125 (313)
T ss_pred HHHHHHHHhhcccccEEEEEecCCCcCCcCcCCHHHHHHHHHHHHhcCCcceEEEEe--------CCCcCCHHHHHHHHH
Confidence 445555554432 11 235 533332 3567788888888888876 3 211111 1222 2678888999
Q ss_pred cCCC-EEEecCCcccC-------------ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCc
Q 022982 113 VGFD-TIELNVGSLEI-------------PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (289)
Q Consensus 113 lGF~-~IEISdGti~i-------------~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~ 178 (289)
.|++ .|+| |.=+. +.++-.+.++.++++|+.|+.-|=...|. ..
T Consensus 126 aG~~~~v~i--G~ES~~d~~L~~~inKg~t~~~~~~ai~~~~~~Gi~v~~~~i~G~P~------~s-------------- 183 (313)
T TIGR01210 126 IGVNVEVAV--GLETANDRIREKSINKGSTFEDFIRAAELARKYGAGVKAYLLFKPPF------LS-------------- 183 (313)
T ss_pred cCCCEEEEE--ecCcCCHHHHHHhhCCCCCHHHHHHHHHHHHHcCCcEEEEEEecCCC------CC--------------
Confidence 9997 5666 33333 34455589999999999987766443221 00
Q ss_pred cccccHHHHHHHHHHHHHccCcEEEEec
Q 022982 179 EYVEDVDLLIRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 179 ~~~~~~~~~I~~~~~dLeAGA~~ViiEa 206 (289)
++ ++.+++++.++...+.+ +.|-+-.
T Consensus 184 e~-ea~ed~~~ti~~~~~l~-~~vs~~~ 209 (313)
T TIGR01210 184 EK-EAIADMISSIRKCIPVT-DTVSINP 209 (313)
T ss_pred hh-hhHHHHHHHHHHHHhcC-CcEEEEC
Confidence 00 13677778888887777 7766544
No 260
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=81.20 E-value=38 Score=30.94 Aligned_cols=145 Identities=14% Similarity=0.133 Sum_probs=77.8
Q ss_pred ecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCce----ecCCcHHHHH---HHhCCch
Q 022982 30 RSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVY----VSTGDWAEHL---IRNGPSA 102 (289)
Q Consensus 30 ~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~----v~~GtlfE~a---~~qg~~~ 102 (289)
+|-.+=+..+..+++.+.+.-++||-+. +-.+.+.+++-++.++++|.. +.|.|-+|.+ +.+. .
T Consensus 68 lDvHLm~~~p~~~i~~~~~~Gad~itvH-------~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~--~ 138 (228)
T PTZ00170 68 LDCHLMVSNPEKWVDDFAKAGASQFTFH-------IEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTD--L 138 (228)
T ss_pred EEEEECCCCHHHHHHHHHHcCCCEEEEe-------ccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccc--h
Confidence 3544433324446666666555666542 222333478888888888763 3455533333 2223 5
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 022982 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (289)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 182 (289)
+|.-+-.+.+-||+..-.+... ..-|+++++. ....++.+ |. . +.
T Consensus 139 vD~Vl~m~v~pG~~gq~~~~~~--------~~ki~~~~~~--~~~~~I~V-----------dG---G-I~---------- 183 (228)
T PTZ00170 139 VDMVLVMTVEPGFGGQSFMHDM--------MPKVRELRKR--YPHLNIQV-----------DG---G-IN---------- 183 (228)
T ss_pred hhhHHhhhcccCCCCcEecHHH--------HHHHHHHHHh--cccCeEEE-----------CC---C-CC----------
Confidence 6666677777888743333211 2234444442 00112333 00 0 11
Q ss_pred cHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHh
Q 022982 183 DVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIG 226 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~ 226 (289)
.+.+....+||||.+++ ++.||.++. + .+.+.+|.+
T Consensus 184 -----~~ti~~~~~aGad~iVv-GsaI~~a~d-~-~~~~~~i~~ 219 (228)
T PTZ00170 184 -----LETIDIAADAGANVIVA-GSSIFKAKD-R-KQAIELLRE 219 (228)
T ss_pred -----HHHHHHHHHcCCCEEEE-chHHhCCCC-H-HHHHHHHHH
Confidence 36778888999999988 678997653 2 334555543
No 261
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=81.03 E-value=50 Score=31.10 Aligned_cols=149 Identities=21% Similarity=0.281 Sum_probs=90.3
Q ss_pred HHHHHHHhhcccccEEEecCc-cccccC-hhHHHHHHHHHHh--CCceecCCcHHHHHHHhCCchHH--HHHHHHHHcCC
Q 022982 42 VLEDIFESMGQFVDGLKFSGG-SHSLMP-KPFIEEVVKRAHQ--HDVYVSTGDWAEHLIRNGPSAFK--EYVEDCKQVGF 115 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~G-Ts~l~p-~~~l~eKI~l~~~--~gV~v~~GtlfE~a~~qg~~~~~--~yl~~~k~lGF 115 (289)
.....+..+..=+||+|+|.- +...-. -+.++.-++.+++ .+..+..-.|.... .-| .++ +..+.+++.||
T Consensus 69 ~~~aa~~~a~~GvdyvKvGl~g~~~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~-r~~--~~~p~~l~~~a~~aG~ 145 (235)
T PF04476_consen 69 ASLAALGAAATGVDYVKVGLFGCKDYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQ-RVG--SISPLDLPEIAAEAGF 145 (235)
T ss_pred HHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchh-hhc--CCCHHHHHHHHHHcCC
Confidence 345566666667999999952 111100 1123333333443 34555555566533 223 333 45788999999
Q ss_pred CEEEecCC-----c--ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHH
Q 022982 116 DTIELNVG-----S--LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 188 (289)
Q Consensus 116 ~~IEISdG-----t--i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I 188 (289)
+.+=|... + --++.++..++++.++++|+. .+. . | + +. .
T Consensus 146 ~gvMlDTa~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~----~aL----A--G--------S-L~---------------~ 191 (235)
T PF04476_consen 146 DGVMLDTADKDGGSLFDHLSEEELAEFVAQARAHGLM----CAL----A--G--------S-LR---------------F 191 (235)
T ss_pred CEEEEecccCCCCchhhcCCHHHHHHHHHHHHHccch----hhc----c--c--------c-CC---------------h
Confidence 99988642 2 268999999999999998776 333 1 0 0 11 2
Q ss_pred HHHHHHHHccCcEEEEeccccccC----CCCccHHHHHHHHhcc
Q 022982 189 RRAERCLEAGADMIMIDSDDVCKH----ADSLRADIIAKVIGRL 228 (289)
Q Consensus 189 ~~~~~dLeAGA~~ViiEarGI~d~----~G~~r~d~v~~ii~~l 228 (289)
+.+..-..-|.|++=+=+- +|.. .|.++.+.|.++-+.+
T Consensus 192 ~di~~L~~l~pD~lGfRGA-vC~ggdR~~G~id~~~V~~lr~~~ 234 (235)
T PF04476_consen 192 EDIPRLKRLGPDILGFRGA-VCGGGDRRAGRIDPELVAALRALM 234 (235)
T ss_pred hHHHHHHhcCCCEEEechh-hCCCCCcCccccCHHHHHHHHHhc
Confidence 3344445688888755332 5554 4789999999887644
No 262
>PRK07360 FO synthase subunit 2; Reviewed
Probab=80.94 E-value=43 Score=32.76 Aligned_cols=200 Identities=12% Similarity=0.111 Sum_probs=112.1
Q ss_pred chhHHHHHHHhhcc-cccEEEecCccccccC-hhHHHHHHHHHHhC--CceecCCcHHHHHHHh---CCchHHHHHHHHH
Q 022982 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHSLMP-KPFIEEVVKRAHQH--DVYVSTGDWAEHLIRN---GPSAFKEYVEDCK 111 (289)
Q Consensus 39 g~~~~~DlLe~ag~-yID~lKfg~GTs~l~p-~~~l~eKI~l~~~~--gV~v~~GtlfE~a~~q---g~~~~~~yl~~~k 111 (289)
.+.++.+..+.+-+ -+.-+=+-.|...-.+ -+.+.+.++..|+. +|.++.=+..|+.+.. | -..++.++.+|
T Consensus 92 s~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G-~~~~e~l~~Lk 170 (371)
T PRK07360 92 TIAEILEKAAEAVKRGATEVCIQGGLHPAADSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDG-LSYEEVLKALK 170 (371)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEccCCCCCCCcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcC-CCHHHHHHHHH
Confidence 34444444433333 3666667777555444 45677888888874 4545433566664422 3 34688999999
Q ss_pred HcCCCEE-EecCCc----------c-cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcc
Q 022982 112 QVGFDTI-ELNVGS----------L-EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTE 179 (289)
Q Consensus 112 ~lGF~~I-EISdGt----------i-~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~ 179 (289)
+.|.+.+ |-|+-+ - ..+.++|.+.++.+++.|+++-+ |.-.+..|
T Consensus 171 eAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~s--g~i~G~gE--------------------- 227 (371)
T PRK07360 171 DAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTS--TMMYGHVE--------------------- 227 (371)
T ss_pred HcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCcee--eEEeeCCC---------------------
Confidence 9999998 333221 1 35778999999999999999866 33332211
Q ss_pred ccccHHHHHHHHHHHHHccCcE------EEEe----ccccccCC----CCccHHHHHHHH-hccCCCc--eEEecCC---
Q 022982 180 YVEDVDLLIRRAERCLEAGADM------IMID----SDDVCKHA----DSLRADIIAKVI-GRLGLEK--TMFEATN--- 239 (289)
Q Consensus 180 ~~~~~~~~I~~~~~dLeAGA~~------ViiE----arGI~d~~----G~~r~d~v~~ii-~~l~~ek--lifEAP~--- 239 (289)
+.+++++.+..--+.+.++ |-+- +-=+.+.. +.--.+.+.-|+ .++=+.+ +-.-|+.
T Consensus 228 ---t~edrv~~l~~lr~l~~~~~g~~~fIp~~f~~~~Tpl~~~~~~~~~~~~~~~lr~iAi~Rl~lp~~~~~i~a~~~~l 304 (371)
T PRK07360 228 ---TPEHRIDHLLILREIQQETGGITEFVPLPFVHENAPLYERGRVKGGAPGLEDLLLYAVSRIFLGNWIKNIQASWVKL 304 (371)
T ss_pred ---CHHHHHHHHHHHHHhchhhCCeeEEEeccccCCCCccccccccCCCCCHHHHHHHHHHHHHhcCCCCCCeeccceee
Confidence 3667777776666666554 3211 11111110 011223343333 3333222 3344442
Q ss_pred chhHHHHHHHhCCCcccc-cCCCCchh
Q 022982 240 PRTSEWFIRRYGPKVNLF-VDHSQVMD 265 (289)
Q Consensus 240 k~qQ~~~I~~fG~~VNLg-I~~~eVl~ 265 (289)
...+..+...+|.|+=-+ |.++.|..
T Consensus 305 g~~~~~~~l~~Gan~~~~~~~~~~v~~ 331 (371)
T PRK07360 305 GLKLAQVALNCGANDLGGTLMEEHITK 331 (371)
T ss_pred CHHHHHHHHhcCCccCcCcCcccceec
Confidence 233445667888887655 66666555
No 263
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=80.89 E-value=3.7 Score=29.79 Aligned_cols=46 Identities=20% Similarity=0.293 Sum_probs=34.5
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 022982 100 PSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (289)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (289)
....++|++.|++.|+++|=|+|=.---.. .++-+.+++.|++|+|
T Consensus 14 ~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~---~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 14 ALSPEELVKRAKELGLKAIAITDHGNLFGA---VEFYKAAKKAGIKPII 59 (67)
T ss_pred cCCHHHHHHHHHHcCCCEEEEeeCCcccCH---HHHHHHHHHcCCeEEE
Confidence 347899999999999999999997622222 2445556678988876
No 264
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=80.88 E-value=15 Score=33.50 Aligned_cols=99 Identities=18% Similarity=0.231 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc-CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLE-IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~-i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 180 (289)
...+..+.+.+.|++.+=|-|=+-+ .....-.++|+++++. + .+-+..+ + ...+
T Consensus 31 d~~~~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~---~--~ipv~~~-------G-----Gi~s-------- 85 (253)
T PRK02083 31 DPVELAKRYNEEGADELVFLDITASSEGRDTMLDVVERVAEQ---V--FIPLTVG-------G-----GIRS-------- 85 (253)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHHh---C--CCCEEee-------C-----CCCC--------
Confidence 4555666677899999988887753 3345556788888874 1 1111111 0 0111
Q ss_pred cccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecC
Q 022982 181 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT 238 (289)
Q Consensus 181 ~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklifEAP 238 (289)
.+.+++.+++||+.|++= ++.+. +.+.+.++.+.+|-+++++=.+
T Consensus 86 -------~~~~~~~l~~Ga~~Viig-t~~l~-----~p~~~~ei~~~~g~~~iv~slD 130 (253)
T PRK02083 86 -------VEDARRLLRAGADKVSIN-SAAVA-----NPELISEAADRFGSQCIVVAID 130 (253)
T ss_pred -------HHHHHHHHHcCCCEEEEC-hhHhh-----CcHHHHHHHHHcCCCCEEEEEE
Confidence 566777788999999994 43433 3578999999888888887665
No 265
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=80.71 E-value=8.1 Score=37.31 Aligned_cols=116 Identities=18% Similarity=0.271 Sum_probs=79.5
Q ss_pred eeEecCCCCCCCchhHHHHHHHhhccccc-EEEecCccccccChhHHHHHHHHHHhCCc-eecCC--cHHHHHHH-hC--
Q 022982 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVD-GLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIR-NG-- 99 (289)
Q Consensus 27 T~V~DkGl~~~~g~~~~~DlLe~ag~yID-~lKfg~GTs~l~p~~~l~eKI~l~~~~gV-~v~~G--tlfE~a~~-qg-- 99 (289)
|.-++-|-+..-.+..++++++..-.++. ...+ |.-..|...-.++++.++++|| .++-| ++=+..+. -|
T Consensus 54 ~iyfGGGTPs~l~~~~l~~ll~~i~~~~~~~~ei---tiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lgR~ 130 (350)
T PRK08446 54 SVFIGGGTPSTVSAKFYEPIFEIISPYLSKDCEI---TTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLKFLGRI 130 (350)
T ss_pred EEEECCCccccCCHHHHHHHHHHHHHhcCCCceE---EEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCC
Confidence 56666665533378899999999887721 1222 2334465566899999999999 88888 67554442 23
Q ss_pred --CchHHHHHHHHHHcCCCEE--EecCCcccCChhHHHHHHHHHHHcCCc
Q 022982 100 --PSAFKEYVEDCKQVGFDTI--ELNVGSLEIPEETLLRYVRLVKSAGLK 145 (289)
Q Consensus 100 --~~~~~~yl~~~k~lGF~~I--EISdGti~i~~~~r~~lI~~~~~~G~~ 145 (289)
.+.+.+-++.+++.||+.| -+-=|.-.-+.+++.+-++.+.+.|..
T Consensus 131 ~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgqt~~~~~~~l~~~~~l~~~ 180 (350)
T PRK08446 131 HSQKQIIKAIENAKKAGFENISIDLIYDTPLDNKKLLKEELKLAKELPIN 180 (350)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCCHHHHHHHHHHHHhcCCC
Confidence 2345556778888999854 555555566778888889999887654
No 266
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=80.62 E-value=38 Score=31.63 Aligned_cols=140 Identities=12% Similarity=0.146 Sum_probs=86.2
Q ss_pred hHHHHHHHhhccc-ccEEEecCccccccChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 022982 41 NVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (289)
Q Consensus 41 ~~~~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~I 118 (289)
..+-+-++...++ +|++=+.||...-+..+.+.--..+.+++|+.+.+= |-- -.++..++..+..++++|++.|
T Consensus 15 ~~l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt~r----~~n~~~l~~~L~~~~~~Gi~nv 90 (272)
T TIGR00676 15 ENLWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPTVPHLTCI----GATREEIREILREYRELGIRHI 90 (272)
T ss_pred HHHHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeec----CCCHHHHHHHHHHHHHCCCCEE
Confidence 3444445666677 999999999887666666655555555789977653 321 1233368889999999999988
Q ss_pred EecCCccc--------CChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHH
Q 022982 119 ELNVGSLE--------IPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (289)
Q Consensus 119 EISdGti~--------i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~ 189 (289)
=+=.|--. -+.++=.+||+.+++. | ..-+|+=. . +.+.+ . ..+.++.++
T Consensus 91 L~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~---~f~ig~a~--~---Peghp--------~------~~~~~~~~~ 148 (272)
T TIGR00676 91 LALRGDPPKGEGTPTPGGFNYASELVEFIRNEFG---DFDIGVAA--Y---PEKHP--------E------APNLEEDIE 148 (272)
T ss_pred EEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcC---CeeEEEEe--C---CCCCC--------C------CCCHHHHHH
Confidence 74333221 1223345677777663 2 01233310 0 11111 1 124667789
Q ss_pred HHHHHHHccCcEEEEec
Q 022982 190 RAERCLEAGADMIMIDS 206 (289)
Q Consensus 190 ~~~~dLeAGA~~ViiEa 206 (289)
.+++-++|||+++|.--
T Consensus 149 ~L~~K~~aGA~f~iTQ~ 165 (272)
T TIGR00676 149 NLKRKVDAGADYAITQL 165 (272)
T ss_pred HHHHHHHcCCCeEeecc
Confidence 99999999999998754
No 267
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=80.40 E-value=22 Score=33.74 Aligned_cols=133 Identities=17% Similarity=0.224 Sum_probs=79.4
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHH----HHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 022982 105 EYVEDCKQVGFDTIELNVGSLEIPEETLL----RYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (289)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~----~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 180 (289)
+.++.|-+.||+.|=+..-.. |.++-. ++++.++..|..|--|+|. . |.++|...+ .. ..
T Consensus 88 e~i~~ai~~Gf~sVmid~s~l--~~~eni~~t~~v~~~a~~~gv~Ve~ElG~-~-----gg~ed~~~g-----~~---~~ 151 (282)
T TIGR01859 88 ESCIKAIKAGFSSVMIDGSHL--PFEENLALTKKVVEIAHAKGVSVEAELGT-L-----GGIEDGVDE-----KE---AE 151 (282)
T ss_pred HHHHHHHHcCCCEEEECCCCC--CHHHHHHHHHHHHHHHHHcCCEEEEeeCC-C-----cCccccccc-----cc---cc
Confidence 466677788999999877665 444433 5666667788888778876 2 112221111 00 00
Q ss_pred cccHHHHHHHHHHHHH-ccCcEEEEe-c--cccccCCCCccHHHHHHHHhccCCCceEEec-CCchhHHHHHHHhCC-Cc
Q 022982 181 VEDVDLLIRRAERCLE-AGADMIMID-S--DDVCKHADSLRADIIAKVIGRLGLEKTMFEA-TNPRTSEWFIRRYGP-KV 254 (289)
Q Consensus 181 ~~~~~~~I~~~~~dLe-AGA~~ViiE-a--rGI~d~~G~~r~d~v~~ii~~l~~eklifEA-P~k~qQ~~~I~~fG~-~V 254 (289)
..|+++ ++++.+ .|+|++-+= + -|+|.....+..+.+.+|-+.+++--++-=+ -.+..+.--+.+.|. .|
T Consensus 152 ~t~~ee----a~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~Gi~ki 227 (282)
T TIGR01859 152 LADPDE----AEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGIPEEQIKKAIKLGIAKI 227 (282)
T ss_pred cCCHHH----HHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHcCCCEE
Confidence 114444 455554 699998864 2 4899888899999999998877633233221 233344443444453 46
Q ss_pred ccc
Q 022982 255 NLF 257 (289)
Q Consensus 255 NLg 257 (289)
|++
T Consensus 228 Nv~ 230 (282)
T TIGR01859 228 NID 230 (282)
T ss_pred EEC
Confidence 665
No 268
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=80.33 E-value=28 Score=33.33 Aligned_cols=195 Identities=14% Similarity=0.199 Sum_probs=115.8
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceec----CCc--H----------HHHHHHhC----C-
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS----TGD--W----------AEHLIRNG----P- 100 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~----~Gt--l----------fE~a~~qg----~- 100 (289)
.+.++|..|-+. +++-|.+-+++-+.++.-|+-|.+.+.++. +|+ + +..+..+- |
T Consensus 5 ~~~~lL~~A~~~----~yAV~AfN~~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~~VPV 80 (285)
T PRK07709 5 SMKEMLNKALEG----KYAVGQFNMNNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPV 80 (285)
T ss_pred cHHHHHHHHHHC----CceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCCCCcE
Confidence 566666665443 567777788888888888888887776442 231 1 11111111 0
Q ss_pred ------chHHHHHHHHHHcCCCEEEecCCcccCChhH--HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccc
Q 022982 101 ------SAFKEYVEDCKQVGFDTIELNVGSLEIPEET--LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVA 172 (289)
Q Consensus 101 ------~~~~~yl~~~k~lGF~~IEISdGti~i~~~~--r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~ 172 (289)
..=-+.+..|-++||+.|=+..-..++.+-- =.++++.++..|.-|--|+|.= |..+|.....
T Consensus 81 ~lHLDHg~~~e~i~~ai~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~i------gg~ed~~~~~--- 151 (285)
T PRK07709 81 AIHLDHGSSFEKCKEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTV------GGQEDDVIAE--- 151 (285)
T ss_pred EEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecc------CCccCCcccc---
Confidence 0112566788899999999976654443322 2367778888899999999982 2122211000
Q ss_pred cCCCCccccccHHHHHHHHHHHHHccCcEEEEec---cccccCCCCccHHHHHHHHhccCCCceEEecC-CchhHHHHHH
Q 022982 173 RAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS---DDVCKHADSLRADIIAKVIGRLGLEKTMFEAT-NPRTSEWFIR 248 (289)
Q Consensus 173 ~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEa---rGI~d~~G~~r~d~v~~ii~~l~~eklifEAP-~k~qQ~~~I~ 248 (289)
.+..+ ||++..+.++ +-|+|.+-+== -|+|...-+++.+.+++|-+.++.--++==+. .|..|.--.-
T Consensus 152 ----~~~yT-~peeA~~Fv~---~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~~iPLVLHGgSG~~~e~~~~ai 223 (285)
T PRK07709 152 ----GVIYA-DPAECKHLVE---ATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTGVPLVLHGGTGIPTADIEKAI 223 (285)
T ss_pred ----cccCC-CHHHHHHHHH---HhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHH
Confidence 00012 5766666665 35999876632 28999888999999999988776332332222 3444443333
Q ss_pred HhC-CCcccc
Q 022982 249 RYG-PKVNLF 257 (289)
Q Consensus 249 ~fG-~~VNLg 257 (289)
++| ..||.+
T Consensus 224 ~~Gi~KiNi~ 233 (285)
T PRK07709 224 SLGTSKINVN 233 (285)
T ss_pred HcCCeEEEeC
Confidence 444 457765
No 269
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=80.26 E-value=49 Score=31.73 Aligned_cols=169 Identities=11% Similarity=0.145 Sum_probs=100.8
Q ss_pred hHHHHHHHhhc--ccccEEEecCccccccChhHHHHHHHHHHhCC-ce-ecCCc-HHHHHHHhCCc-hHHHHHHHHHHcC
Q 022982 41 NVLEDIFESMG--QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-VY-VSTGD-WAEHLIRNGPS-AFKEYVEDCKQVG 114 (289)
Q Consensus 41 ~~~~DlLe~ag--~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~g-V~-v~~Gt-lfE~a~~qg~~-~~~~yl~~~k~lG 114 (289)
..++.+++... .-|.-+-|++|--.+.+.+.|.+.++.+++.+ |. +..|| .. ..+|. .-++.++.+++.|
T Consensus 122 ~e~~~~i~~i~~~~~I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~----v~~p~rit~ell~~L~~~g 197 (321)
T TIGR03822 122 AELDAAFAYIADHPEIWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVP----VADPARVTPALIAALKTSG 197 (321)
T ss_pred HHHHHHHHHHHhCCCccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCc----ccChhhcCHHHHHHHHHcC
Confidence 45555555333 23677889999999998888999999999876 21 22243 11 11111 2357777888889
Q ss_pred CCEEEecCCcc---cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHH
Q 022982 115 FDTIELNVGSL---EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRA 191 (289)
Q Consensus 115 F~~IEISdGti---~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~ 191 (289)
.. +-||--+. ++. ++-.+.|+++++.|+.+.-..-+-. .+. .+.+.+.+.+
T Consensus 198 ~~-v~i~l~~~h~~el~-~~~~~ai~~L~~~Gi~v~~q~vLl~---gvN---------------------d~~~~l~~l~ 251 (321)
T TIGR03822 198 KT-VYVALHANHARELT-AEARAACARLIDAGIPMVSQSVLLR---GVN---------------------DDPETLAALM 251 (321)
T ss_pred Cc-EEEEecCCChhhcC-HHHHHHHHHHHHcCCEEEEEeeEeC---CCC---------------------CCHHHHHHHH
Confidence 65 45654442 233 5556899999999987666554411 111 1366778888
Q ss_pred HHHHHccCcEEEEec----cc--cccCCCCccHHHHHHHHhccC---CCceEEecCC
Q 022982 192 ERCLEAGADMIMIDS----DD--VCKHADSLRADIIAKVIGRLG---LEKTMFEATN 239 (289)
Q Consensus 192 ~~dLeAGA~~ViiEa----rG--I~d~~G~~r~d~v~~ii~~l~---~eklifEAP~ 239 (289)
+..++.|+...-+.- .| .|+-.-+--.++++++.++++ .-+++-|.|.
T Consensus 252 ~~l~~~gv~pyyl~~~~p~~g~~~f~~~~~~~~~i~~~l~~~~~g~~~p~~v~~~~~ 308 (321)
T TIGR03822 252 RAFVECRIKPYYLHHLDLAPGTAHFRVTIEEGQALVRALRGRISGLAQPTYVLDIPG 308 (321)
T ss_pred HHHHhcCCeeEEEEecCCCCCcccccCcHHHHHHHHHHHHHhCCCCcceeEEEeCCC
Confidence 888899987444333 23 232111111344455544444 5577777774
No 270
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=80.21 E-value=8.9 Score=36.99 Aligned_cols=80 Identities=26% Similarity=0.390 Sum_probs=48.2
Q ss_pred HHHHHHHHHcCCCEEEecCCcc-------------cCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccccccc
Q 022982 104 KEYVEDCKQVGFDTIELNVGSL-------------EIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGA 169 (289)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti-------------~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~ 169 (289)
-+-.+.|++.|||.|||+-|+= .-..+.-.++++.+++. + +| +.+|.- +|..++
T Consensus 80 ~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~---~p-VsvKiR---~g~~~~----- 147 (333)
T PRK11815 80 AEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVS---IP-VTVKHR---IGIDDQ----- 147 (333)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcC---Cc-eEEEEE---eeeCCC-----
Confidence 3334456778999999997752 11223334666666653 2 22 444431 110010
Q ss_pred ccccCCCCccccccHHHHHHHHHHHHHccCcEEEEecc
Q 022982 170 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
.+.+.+++.++...++||+.+++-+|
T Consensus 148 ------------~t~~~~~~~~~~l~~aG~d~i~vh~R 173 (333)
T PRK11815 148 ------------DSYEFLCDFVDTVAEAGCDTFIVHAR 173 (333)
T ss_pred ------------cCHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 12556788888888999999999987
No 271
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=80.11 E-value=5.1 Score=36.57 Aligned_cols=68 Identities=24% Similarity=0.192 Sum_probs=42.7
Q ss_pred chHHHHHHHHHHcCCCEEEec--CCcccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCC
Q 022982 101 SAFKEYVEDCKQVGFDTIELN--VGSLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEIS--dGti~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 177 (289)
+....|...|+.+|++.|=+- +|+...-. .++|+++++. ...+.-=+|++ +
T Consensus 134 e~~~~~a~aa~~~G~~~i~Le~~sGa~~~v~---~e~i~~Vk~~~~~Pv~vGGGIr------------------s----- 187 (205)
T TIGR01769 134 EIAAAYCLAAKYFGMKWVYLEAGSGASYPVN---PETISLVKKASGIPLIVGGGIR------------------S----- 187 (205)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCCCCCCCC---HHHHHHHHHhhCCCEEEeCCCC------------------C-----
Confidence 457889999999999976554 45532222 4566666663 22222222221 1
Q ss_pred ccccccHHHHHHHHHHHHHccCcEEEE
Q 022982 178 TEYVEDVDLLIRRAERCLEAGADMIMI 204 (289)
Q Consensus 178 ~~~~~~~~~~I~~~~~dLeAGA~~Vii 204 (289)
.++++.-+++|||.|++
T Consensus 188 ----------~e~a~~l~~~GAD~VVV 204 (205)
T TIGR01769 188 ----------PEIAYEIVLAGADAIVT 204 (205)
T ss_pred ----------HHHHHHHHHcCCCEEEe
Confidence 46777778999999987
No 272
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=80.10 E-value=15 Score=34.60 Aligned_cols=148 Identities=17% Similarity=0.194 Sum_probs=90.2
Q ss_pred hHHHHHHHhhcccccEEEecCccccc-cC----hhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCC
Q 022982 41 NVLEDIFESMGQFVDGLKFSGGSHSL-MP----KPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGF 115 (289)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GTs~l-~p----~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF 115 (289)
..+-+.|..+| ||.+=+|+..+.- .| .+.+.+.+.. ..++.+ .+|. . .. +=++.+.+.|.
T Consensus 23 ~~i~~~L~~~G--v~~IEvGs~~~~~~~p~~~d~~~~~~~l~~--~~~~~~--~~~~-----~---~~-~dv~~A~~~g~ 87 (274)
T cd07938 23 IELIDALSAAG--LRRIEVTSFVSPKWVPQMADAEEVLAGLPR--RPGVRY--SALV-----P---NL-RGAERALAAGV 87 (274)
T ss_pred HHHHHHHHHcC--CCEEEeCCCCCcccccccCCHHHHHhhccc--CCCCEE--EEEC-----C---CH-HHHHHHHHcCc
Confidence 34556677777 9999999654433 22 2222222221 112222 2232 1 22 23788888999
Q ss_pred CEEEecCCccc--------CC----hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccc
Q 022982 116 DTIELNVGSLE--------IP----EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (289)
Q Consensus 116 ~~IEISdGti~--------i~----~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~ 183 (289)
+.|-+...+-+ .+ .+.-.+.|+.+++.|++|.--+..-+.. + .+. ..+
T Consensus 88 ~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~-~----~~~---------------~~~ 147 (274)
T cd07938 88 DEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGC-P----YEG---------------EVP 147 (274)
T ss_pred CEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecC-C----CCC---------------CCC
Confidence 99888755433 12 2445567999999999865444332211 1 100 115
Q ss_pred HHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 184 VDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 184 ~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
++.+++.++...++||+.|- |.|..|...+..+.++++.+
T Consensus 148 ~~~~~~~~~~~~~~Ga~~i~-----l~DT~G~~~P~~v~~lv~~l 187 (274)
T cd07938 148 PERVAEVAERLLDLGCDEIS-----LGDTIGVATPAQVRRLLEAV 187 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEE-----ECCCCCccCHHHHHHHHHHH
Confidence 88899999999999998764 67888888888888777644
No 273
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=80.00 E-value=20 Score=33.66 Aligned_cols=181 Identities=15% Similarity=0.155 Sum_probs=93.0
Q ss_pred hHHHHHHHhhcccccEEEecCccccc--cChhHHHHHHHHHHhCCc---eecCCcHHHHHHHhCCchHHHHHHHHHHcCC
Q 022982 41 NVLEDIFESMGQFVDGLKFSGGSHSL--MPKPFIEEVVKRAHQHDV---YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGF 115 (289)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GTs~l--~p~~~l~eKI~l~~~~gV---~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF 115 (289)
..++..++.|-+|==.+=+| ||..- +.+..+++=++.|++.|. .++-|++ + +.. +.-.++++.+++.||
T Consensus 41 ~~l~eki~la~~~~V~v~~G-Gtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~-~--i~~--~~~~rlI~~~~~~g~ 114 (237)
T TIGR03849 41 DIVKEKIEMYKDYGIKVYPG-GTLFEIAHSKGKFDEYLNECDELGFEAVEISDGSM-E--ISL--EERCNLIERAKDNGF 114 (237)
T ss_pred HHHHHHHHHHHHcCCeEeCC-ccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCcc-C--CCH--HHHHHHHHHHHhCCC
Confidence 34555555554441112222 33321 222344444447777776 3444532 1 111 134566777777776
Q ss_pred CEE-Eec----CCcccCChhHHHHHHHHHHHcCCc-cccee---eeecCCCCCCCccccccccccccCCCCccccccHHH
Q 022982 116 DTI-ELN----VGSLEIPEETLLRYVRLVKSAGLK-AKPKF---AVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (289)
Q Consensus 116 ~~I-EIS----dGti~i~~~~r~~lI~~~~~~G~~-v~~E~---g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (289)
.+. |+. .-...++.+++.+.+++.-++|=. |.-|= |+. +|.-++ ...| -.+
T Consensus 115 ~v~~EvG~K~~~~~~~~~~~~~i~~~~~~LeAGA~~ViiEarEsg~~-----~Gi~~~--------~g~~-------r~d 174 (237)
T TIGR03849 115 MVLSEVGKKSPEKDSELTPDDRIKLINKDLEAGADYVIIEGRESGKN-----IGLFDE--------KGNV-------KED 174 (237)
T ss_pred eEeccccccCCcccccCCHHHHHHHHHHHHHCCCcEEEEeehhcCCC-----cceeCC--------CCCC-------chH
Confidence 654 221 112257889999999888888865 33332 110 010000 0112 344
Q ss_pred HHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCce-EEecCCchhHHHHHHHhCCCcccccCCCCchh
Q 022982 187 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKT-MFEATNPRTSEWFIRRYGPKVNLFVDHSQVMD 265 (289)
Q Consensus 187 ~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~ekl-ifEAP~k~qQ~~~I~~fG~~VNLgI~~~eVl~ 265 (289)
++..+-. +.|.++||-||- .++.-..++.++|++-= -+=+|.--.+..=+++
T Consensus 175 ~v~~i~~--~l~~eklifEAp---------~k~~q~~~I~~~G~~VNL~NI~~~evi~LE~LR~---------------- 227 (237)
T TIGR03849 175 ELDVLAE--NVDINKVIFEAP---------QKNQQVEFILKFGPDVNLGNIPPEEVISLETLRR---------------- 227 (237)
T ss_pred HHHHHHh--hCChhcEEEECC---------CHHHHHHHHHHhCCCcccccCCHHHHHHHHHHhc----------------
Confidence 4555554 478999999996 24555666676664422 2233443344444444
Q ss_pred hhhhhcccCCC
Q 022982 266 LECLRGRNLGK 276 (289)
Q Consensus 266 LE~LR~g~~G~ 276 (289)
-||++||||
T Consensus 228 --GLrgDT~~k 236 (237)
T TIGR03849 228 --GLRGDTFGK 236 (237)
T ss_pred --ccccccccc
Confidence 688888887
No 274
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=79.98 E-value=7.1 Score=35.62 Aligned_cols=116 Identities=18% Similarity=0.269 Sum_probs=70.2
Q ss_pred hhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecC--CcHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022982 40 HNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (289)
Q Consensus 40 ~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~--GtlfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (289)
.++.+.+.+.- .|++=+= +|.-.-| ..|.+.+...|++++.+.- .|+=|... |.++|||.
T Consensus 54 ~~ev~~l~~aG---adIIAlD-aT~R~Rp-~~l~~li~~i~~~~~l~MADist~ee~~~-------------A~~~G~D~ 115 (192)
T PF04131_consen 54 LKEVDALAEAG---ADIIALD-ATDRPRP-ETLEELIREIKEKYQLVMADISTLEEAIN-------------AAELGFDI 115 (192)
T ss_dssp HHHHHHHHHCT----SEEEEE--SSSS-S-S-HHHHHHHHHHCTSEEEEE-SSHHHHHH-------------HHHTT-SE
T ss_pred HHHHHHHHHcC---CCEEEEe-cCCCCCC-cCHHHHHHHHHHhCcEEeeecCCHHHHHH-------------HHHcCCCE
Confidence 44555555543 4555544 4666777 6799999999999977776 46655443 35799999
Q ss_pred EEec-CCcccCC--hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHH
Q 022982 118 IELN-VGSLEIP--EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERC 194 (289)
Q Consensus 118 IEIS-dGti~i~--~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~d 194 (289)
|=-- .|..+=+ ..-=.+||+++.+.+..|.-|=++. + -+++++.
T Consensus 116 I~TTLsGYT~~t~~~~pD~~lv~~l~~~~~pvIaEGri~------------------t---------------pe~a~~a 162 (192)
T PF04131_consen 116 IGTTLSGYTPYTKGDGPDFELVRELVQADVPVIAEGRIH------------------T---------------PEQAAKA 162 (192)
T ss_dssp EE-TTTTSSTTSTTSSHHHHHHHHHHHTTSEEEEESS--------------------S---------------HHHHHHH
T ss_pred EEcccccCCCCCCCCCCCHHHHHHHHhCCCcEeecCCCC------------------C---------------HHHHHHH
Confidence 8531 1111111 2222479999988777766665551 1 3778899
Q ss_pred HHccCcEEEEec
Q 022982 195 LEAGADMIMIDS 206 (289)
Q Consensus 195 LeAGA~~ViiEa 206 (289)
|++||+.|+|=+
T Consensus 163 l~~GA~aVVVGs 174 (192)
T PF04131_consen 163 LELGAHAVVVGS 174 (192)
T ss_dssp HHTT-SEEEE-H
T ss_pred HhcCCeEEEECc
Confidence 999999999854
No 275
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=79.95 E-value=22 Score=32.56 Aligned_cols=101 Identities=19% Similarity=0.220 Sum_probs=67.9
Q ss_pred CceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCce----ec-----CCcHHHHH
Q 022982 25 GVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVY----VS-----TGDWAEHL 95 (289)
Q Consensus 25 GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~----v~-----~GtlfE~a 95 (289)
++....|=|+ + .+..++.+|+.-.+ |.+.||+++.+++.+++.++.+.+. |. +. .-||-+
T Consensus 75 ~~pv~vgGGi--r-s~edv~~~l~~Ga~-----kvviGs~~l~~p~l~~~i~~~~~~~-i~vsld~~~~~v~~~Gw~~-- 143 (241)
T PRK14024 75 DVKVELSGGI--R-DDESLEAALATGCA-----RVNIGTAALENPEWCARVIAEHGDR-VAVGLDVRGHTLAARGWTR-- 143 (241)
T ss_pred CCCEEEcCCC--C-CHHHHHHHHHCCCC-----EEEECchHhCCHHHHHHHHHHhhhh-EEEEEEEeccEeccCCeee--
Confidence 4555566655 3 56677777776444 7899999999999999999888654 32 21 124543
Q ss_pred HHhCCchHHHHHHHHHHcCCCEEEecCC----cccCChhHHHHHHHHHHHc
Q 022982 96 IRNGPSAFKEYVEDCKQVGFDTIELNVG----SLEIPEETLLRYVRLVKSA 142 (289)
Q Consensus 96 ~~qg~~~~~~yl~~~k~lGF~~IEISdG----ti~i~~~~r~~lI~~~~~~ 142 (289)
... ...++.+.+.+.|++.+=+-+= +..=+ + .++|+.+++.
T Consensus 144 -~~~--~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~--d-~~~i~~i~~~ 188 (241)
T PRK14024 144 -DGG--DLWEVLERLDSAGCSRYVVTDVTKDGTLTGP--N-LELLREVCAR 188 (241)
T ss_pred -cCc--cHHHHHHHHHhcCCCEEEEEeecCCCCccCC--C-HHHHHHHHhh
Confidence 222 6788999999999998877543 33322 2 4677777763
No 276
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=79.76 E-value=12 Score=34.03 Aligned_cols=100 Identities=12% Similarity=0.148 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 181 (289)
.--++.+..++.|++.+=|=|=.-....+.-..+|+++.+.= .+.++.+. + +.+
T Consensus 36 dp~~~a~~~~~~g~~~l~i~DLd~~~~~~~n~~~i~~i~~~~-----~~~v~vgG------G------ir~--------- 89 (233)
T cd04723 36 DPLDVARAYKELGFRGLYIADLDAIMGRGDNDEAIRELAAAW-----PLGLWVDG------G------IRS--------- 89 (233)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCccccCCCccHHHHHHHHHhC-----CCCEEEec------C------cCC---------
Confidence 344555666677999888766544445666677888887731 11222111 1 111
Q ss_pred ccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecCCc
Q 022982 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNP 240 (289)
Q Consensus 182 ~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklifEAP~k 240 (289)
++.+++.|++||++|++=+.-+.+ +++.++++++|-+++++=-.-+
T Consensus 90 ------~edv~~~l~~Ga~~viigt~~~~~-------~~~~~~~~~~~~~~iivslD~~ 135 (233)
T cd04723 90 ------LENAQEWLKRGASRVIVGTETLPS-------DDDEDRLAALGEQRLVLSLDFR 135 (233)
T ss_pred ------HHHHHHHHHcCCCeEEEcceeccc-------hHHHHHHHhcCCCCeEEEEecc
Confidence 688899999999999996653322 4677777777655777655543
No 277
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=79.72 E-value=59 Score=31.13 Aligned_cols=136 Identities=21% Similarity=0.248 Sum_probs=82.0
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHH----HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 022982 105 EYVEDCKQVGFDTIELNVGSLEIPEETL----LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (289)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r----~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 180 (289)
+.+..|-+.||+.|=+..-.+ |.++= .++++.++..|.-|--|+|.=-+ .+|..- .. .-.+..
T Consensus 88 e~i~~ai~~GftSVM~DgS~l--p~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg------~e~~~~---~~--~~~~~~ 154 (284)
T PRK12857 88 EQVMKCIRNGFTSVMIDGSKL--PLEENIALTKKVVEIAHAVGVSVEAELGKIGG------TEDDIT---VD--EREAAM 154 (284)
T ss_pred HHHHHHHHcCCCeEEEeCCCC--CHHHHHHHHHHHHHHHHHcCCEEEEEeeecCC------ccCCCC---cc--cchhhc
Confidence 467778889999999976654 44443 36778888899999999988321 111100 00 000001
Q ss_pred cccHHHHHHHHHHHHHccCcEEEEec---cccccCCCCccHHHHHHHHhccCCCceEEecC-C-chhHHHHHHHhCCCcc
Q 022982 181 VEDVDLLIRRAERCLEAGADMIMIDS---DDVCKHADSLRADIIAKVIGRLGLEKTMFEAT-N-PRTSEWFIRRYGPKVN 255 (289)
Q Consensus 181 ~~~~~~~I~~~~~dLeAGA~~ViiEa---rGI~d~~G~~r~d~v~~ii~~l~~eklifEAP-~-k~qQ~~~I~~fG~~VN 255 (289)
+ ||++..+.++ +-|+|.+-|== -|+|...-+++-+.+++|-+.++.-=++==+. . .+|....|+.==..||
T Consensus 155 T-~pe~a~~Fv~---~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiN 230 (284)
T PRK12857 155 T-DPEEARRFVE---ETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELVNIPIVLHGSSGVPDEAIRKAISLGVRKVN 230 (284)
T ss_pred C-CHHHHHHHHH---HHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEE
Confidence 2 5766666554 34888766543 39998888999999999988765321222111 2 2344444544445677
Q ss_pred cc
Q 022982 256 LF 257 (289)
Q Consensus 256 Lg 257 (289)
++
T Consensus 231 i~ 232 (284)
T PRK12857 231 ID 232 (284)
T ss_pred eC
Confidence 75
No 278
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.64 E-value=28 Score=32.22 Aligned_cols=148 Identities=12% Similarity=0.154 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc------CChhHHHHHHHHHHHcCCcccceeeeecCCCCCC-CccccccccccccC
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLE------IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIP-SDRDRAFGAYVARA 174 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~------i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg-~~~d~~~~~~~~~~ 174 (289)
.+.+-++.++++|++++||--..=. ++.++..++.+.++++++.+.+ +.+..+.. +. +..|++.
T Consensus 12 ~~~~a~~~~~~~G~~~~qif~~~P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~Hapy~-iNlas~~~~~------- 82 (274)
T TIGR00587 12 GLQAAYNRAAEIGATAFMFFLKSPRWWRRPMLEEEVIDWFKAALETNKNLSQI-VLVHAPYL-INLASPDEEK------- 82 (274)
T ss_pred CHHHHHHHHHHhCCCEEEEEecCccccCCCCCCHHHHHHHHHHHHHcCCCCcc-eeccCCee-eecCCCCHHH-------
Confidence 5666777889999999999544433 4455554555556777765322 22211110 00 0111110
Q ss_pred CCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCC----ccHHHHHHHHhccCCCceEEec---------CCch
Q 022982 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADS----LRADIIAKVIGRLGLEKTMFEA---------TNPR 241 (289)
Q Consensus 175 ~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~----~r~d~v~~ii~~l~~eklifEA---------P~k~ 241 (289)
+ ..+++.+.+.++.+-+-||.+|.+..--..+...+ .-.+-+.++++...-=+|..|- ..++
T Consensus 83 -r----~~sv~~~~~~i~~A~~lga~~vv~H~G~~~~~~~e~~~~~~~~~l~~l~~~~~~v~l~lEN~~~~~~~l~~~~~ 157 (274)
T TIGR00587 83 -E----EKSLDVLDEELKRCELLGIMLYNFHPGSALKCSEEEGLDNLIESLNVVIKETKIVTILLENMAGQGSELGRSFE 157 (274)
T ss_pred -H----HHHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHhccCCCEEEEEeCCCCCCccCCCHH
Confidence 0 12466677777777788999999987322221100 0112233344322223588883 2566
Q ss_pred hHHHHHHHhCC--CcccccCCCCc
Q 022982 242 TSEWFIRRYGP--KVNLFVDHSQV 263 (289)
Q Consensus 242 qQ~~~I~~fG~--~VNLgI~~~eV 263 (289)
+-..+++.++. ++-+.+|...+
T Consensus 158 el~~ll~~~~~~~~lg~~lDt~H~ 181 (274)
T TIGR00587 158 ELAYIIKVIVDKRRIGVCLDTCHF 181 (274)
T ss_pred HHHHHHHhcCCCCceEEEEEhhhH
Confidence 67899999984 44333544443
No 279
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=79.39 E-value=19 Score=32.42 Aligned_cols=143 Identities=18% Similarity=0.155 Sum_probs=75.3
Q ss_pred CCceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceec----CC-----cHHHH
Q 022982 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS----TG-----DWAEH 94 (289)
Q Consensus 24 ~GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~----~G-----tlfE~ 94 (289)
.+++.+.+=|+ . .+...+.+++.-.+.| -.||..+..++.+++..+.+.+..|.++ .| +|.+.
T Consensus 75 ~~~~l~v~GGi--~-~~~~~~~~~~~Ga~~v-----~iGs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~ 146 (241)
T PRK13585 75 VGVPVQLGGGI--R-SAEDAASLLDLGVDRV-----ILGTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEK 146 (241)
T ss_pred cCCcEEEcCCc--C-CHHHHHHHHHcCCCEE-----EEChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCccc
Confidence 34555555444 2 4445555666444444 3377777666666666666544333222 11 22211
Q ss_pred HHHhCCchHHHHHHHHHHcCCCEEEecC----CcccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccccccc
Q 022982 95 LIRNGPSAFKEYVEDCKQVGFDTIELNV----GSLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGA 169 (289)
Q Consensus 95 a~~qg~~~~~~yl~~~k~lGF~~IEISd----Gti~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~ 169 (289)
. .....++.+.+.+.|++.|=+.+ |+..-+ -.++|+.+.+. .+.+...=|
T Consensus 147 ~----~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~~g~---~~~~i~~i~~~~~iPvia~GG------------------ 201 (241)
T PRK13585 147 T----GYTPVEAAKRFEELGAGSILFTNVDVEGLLEGV---NTEPVKELVDSVDIPVIASGG------------------ 201 (241)
T ss_pred C----CCCHHHHHHHHHHcCCCEEEEEeecCCCCcCCC---CHHHHHHHHHhCCCCEEEeCC------------------
Confidence 0 11567777888888998887643 333221 13456666653 111111111
Q ss_pred ccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCC
Q 022982 170 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADS 215 (289)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~ 215 (289)
+.++++ +++.+++||+.|++ ++.++.+.-.
T Consensus 202 -----------I~~~~d----i~~~~~~Ga~gv~v-gsa~~~~~~~ 231 (241)
T PRK13585 202 -----------VTTLDD----LRALKEAGAAGVVV-GSALYKGKFT 231 (241)
T ss_pred -----------CCCHHH----HHHHHHcCCCEEEE-EHHHhcCCcC
Confidence 113444 33346789999999 8878776543
No 280
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=79.38 E-value=52 Score=31.84 Aligned_cols=82 Identities=16% Similarity=0.131 Sum_probs=48.1
Q ss_pred HHHHHHHHcCCCEEEecCCcc-----c-------------CChhHHHH----HHHHHHHc-CCcccceeeeecCCCCCCC
Q 022982 105 EYVEDCKQVGFDTIELNVGSL-----E-------------IPEETLLR----YVRLVKSA-GLKAKPKFAVMFNKSDIPS 161 (289)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti-----~-------------i~~~~r~~----lI~~~~~~-G~~v~~E~g~k~~~~evg~ 161 (289)
+--+.|++.|||.|||.-+.- = =+.+.|.| +|+.+++. |-. + +++|....+..
T Consensus 156 ~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d--~-v~vRis~~~~~- 231 (338)
T cd02933 156 QAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGAD--R-VGIRLSPFGTF- 231 (338)
T ss_pred HHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCC--c-eEEEECccccC-
Confidence 334567778999999987651 0 12234544 45555553 322 3 77766433211
Q ss_pred ccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEE
Q 022982 162 DRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 204 (289)
Q Consensus 162 ~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~Vii 204 (289)
.+. .+ -.+.++.++.++.--++|+|+|=|
T Consensus 232 -~~~---------~~----~~~~ee~~~~~~~l~~~g~d~i~v 260 (338)
T cd02933 232 -NDM---------GD----SDPEATFSYLAKELNKRGLAYLHL 260 (338)
T ss_pred -CCC---------CC----CCCHHHHHHHHHHHHHcCCcEEEE
Confidence 000 00 114788888888888899999987
No 281
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=79.26 E-value=8.9 Score=36.09 Aligned_cols=75 Identities=23% Similarity=0.381 Sum_probs=50.2
Q ss_pred HHHcCCCEEEecCC----------cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcc
Q 022982 110 CKQVGFDTIELNVG----------SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTE 179 (289)
Q Consensus 110 ~k~lGF~~IEISdG----------ti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~ 179 (289)
+.+.||++|=+.|+ +..++.++.+..++.+.+. .+.+. .--|-.|+.+.
T Consensus 28 ~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~---------~~~p~----viaD~~fg~y~-------- 86 (254)
T cd06557 28 ADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRG---------APRAL----VVADMPFGSYQ-------- 86 (254)
T ss_pred HHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhc---------CCCCe----EEEeCCCCccc--------
Confidence 45679999976543 2367888988888887762 11110 00111222221
Q ss_pred ccccHHHHHHHHHHHHH-ccCcEEEEecc
Q 022982 180 YVEDVDLLIRRAERCLE-AGADMIMIDSD 207 (289)
Q Consensus 180 ~~~~~~~~I~~~~~dLe-AGA~~ViiEar 207 (289)
.++++.++.+.+.++ |||+.|-||.-
T Consensus 87 --~~~~~av~~a~r~~~~aGa~aVkiEd~ 113 (254)
T cd06557 87 --TSPEQALRNAARLMKEAGADAVKLEGG 113 (254)
T ss_pred --CCHHHHHHHHHHHHHHhCCeEEEEcCc
Confidence 258999999999999 99999999984
No 282
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=79.22 E-value=9.6 Score=39.38 Aligned_cols=151 Identities=11% Similarity=0.175 Sum_probs=95.2
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCc---hHHHHHHHHHHcCCCEE
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPS---AFKEYVEDCKQVGFDTI 118 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~---~~~~yl~~~k~lGF~~I 118 (289)
.+-+.|..+| ||.+=.||-.+.-...+.+++..+.-. -+..++. |.= ...++ ..+.-++.+.+.|.+.|
T Consensus 27 ~Ia~~L~~~G--Vd~IE~G~p~~s~~d~~~v~~i~~~~~-~~~~i~~--~~r---~~r~~~~~~~d~~~ea~~~~~~~~v 98 (526)
T TIGR00977 27 RIAERLDDLG--IHYIEGGWPGANPKDVQFFWQLKEMNF-KNAKIVA--FCS---TRRPHKKVEEDKMLQALIKAETPVV 98 (526)
T ss_pred HHHHHHHHcC--CCEEEEeCCCCChHHHHHHHHHHHhCC-CCcEEEE--Eee---ecCCCCCCchHHHHHHHhcCCCCEE
Confidence 4556677788 999999986665444444544433211 1233332 110 00111 34677888899999999
Q ss_pred EecCCcc--------cCChhHHH----HHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHH
Q 022982 119 ELNVGSL--------EIPEETLL----RYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (289)
Q Consensus 119 EISdGti--------~i~~~~r~----~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (289)
-|...+- ..+.++=+ +.|+.+++.|+.|. |.-.+.. | ++ + .+++.
T Consensus 99 ~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~--~~~e~f~-------D----~~----r------~~~~~ 155 (526)
T TIGR00977 99 TIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVI--YDAEHFF-------D----GY----K------ANPEY 155 (526)
T ss_pred EEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE--EEeeeee-------e----cc----c------CCHHH
Confidence 9876653 33444433 34788899988763 4332100 1 00 1 15889
Q ss_pred HHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 187 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 187 ~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
+++.++...++||+.|. |+|..|-..+..+.++++.+
T Consensus 156 l~~~~~~a~~aGad~i~-----i~DTvG~~~P~~v~~li~~l 192 (526)
T TIGR00977 156 ALATLATAQQAGADWLV-----LCDTNGGTLPHEISEITTKV 192 (526)
T ss_pred HHHHHHHHHhCCCCeEE-----EecCCCCcCHHHHHHHHHHH
Confidence 99999999999999986 57889998888888887654
No 283
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=79.09 E-value=7.9 Score=37.18 Aligned_cols=77 Identities=29% Similarity=0.390 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCCh--------hHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIPE--------ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVAR 173 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~--------~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~ 173 (289)
.+.+|.+.+++.|+|+|||+=++...+. +...++++.+++. . -+| +.+|-. |
T Consensus 113 ~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~-~-~iP-v~vKl~-----------------p 172 (325)
T cd04739 113 GWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSA-V-TIP-VAVKLS-----------------P 172 (325)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhc-c-CCC-EEEEcC-----------------C
Confidence 4668888889999999999888643332 2235778877764 1 133 455421 0
Q ss_pred CCCCccccccHHHHHHHHHHHHHccCcEEEEecc
Q 022982 174 APRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 174 ~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
+..++.+.++...++||+-|++-.+
T Consensus 173 ---------~~~~~~~~a~~l~~~Gadgi~~~nt 197 (325)
T cd04739 173 ---------FFSALAHMAKQLDAAGADGLVLFNR 197 (325)
T ss_pred ---------CccCHHHHHHHHHHcCCCeEEEEcC
Confidence 1223466667777999999999887
No 284
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=79.01 E-value=13 Score=35.55 Aligned_cols=87 Identities=20% Similarity=0.329 Sum_probs=64.1
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 022982 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (289)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 182 (289)
++.-.+..|+-|-++|-+..| ++..+.|+++.++|.-|.-.+|.--.. + ..+|.+-..- ...+
T Consensus 96 ~~nA~r~~ke~gA~aVKlEGG------~~~~~~i~~L~~~gIPV~gHiGLtPQ~--v-----~~~GGykvqG----r~~~ 158 (268)
T COG0413 96 LKNAARLMKEAGADAVKLEGG------EEMAETIKRLTERGIPVMGHIGLTPQS--V-----NWLGGYKVQG----RTEE 158 (268)
T ss_pred HHHHHHHHHHhCCCEEEEcCC------HHHHHHHHHHHHcCCceEEEecCChhh--h-----hccCCeeeec----CCHH
Confidence 444456678899999999999 778899999999999999999884321 1 0111111100 1123
Q ss_pred cHHHHHHHHHHHHHccCcEEEEec
Q 022982 183 DVDLLIRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAGA~~ViiEa 206 (289)
+.+++++.+++-=+|||..|.+|.
T Consensus 159 ~a~~l~~dA~ale~AGaf~ivlE~ 182 (268)
T COG0413 159 SAEKLLEDAKALEEAGAFALVLEC 182 (268)
T ss_pred HHHHHHHHHHHHHhcCceEEEEec
Confidence 578999999999999999999998
No 285
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=78.91 E-value=6.5 Score=36.77 Aligned_cols=68 Identities=16% Similarity=0.113 Sum_probs=52.3
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccH
Q 022982 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184 (289)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~ 184 (289)
.-.+.+...|||.|-|.-=--.++.++...+|+.++..|..++--+-- .|
T Consensus 31 ~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~----------~~-------------------- 80 (256)
T PRK10558 31 ITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPT----------NE-------------------- 80 (256)
T ss_pred HHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCC----------CC--------------------
Confidence 345566788999999999999999999999999999887665432211 11
Q ss_pred HHHHHHHHHHHHccCcEEEEe
Q 022982 185 DLLIRRAERCLEAGADMIMID 205 (289)
Q Consensus 185 ~~~I~~~~~dLeAGA~~ViiE 205 (289)
-..+++.||+||+-||+=
T Consensus 81 ---~~~i~r~LD~Ga~giivP 98 (256)
T PRK10558 81 ---PVIIKRLLDIGFYNFLIP 98 (256)
T ss_pred ---HHHHHHHhCCCCCeeeec
Confidence 245678999999999974
No 286
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=78.80 E-value=5.3 Score=37.89 Aligned_cols=78 Identities=15% Similarity=0.209 Sum_probs=54.1
Q ss_pred chhHHHHHHHhhcccccEEEe---cCccc----cccChhHHHHHHHHHHhCCceecC-Cc-HHHHHHHhCCchHHHHHHH
Q 022982 39 SHNVLEDIFESMGQFVDGLKF---SGGSH----SLMPKPFIEEVVKRAHQHDVYVST-GD-WAEHLIRNGPSAFKEYVED 109 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKf---g~GTs----~l~p~~~l~eKI~l~~~~gV~v~~-Gt-lfE~a~~qg~~~~~~yl~~ 109 (289)
.+..++..++..+.|---.|+ ..-|- .+|+.+.|++.-++||+|||+++- |. ++|.+...+ ..+.+|.
T Consensus 107 ~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~-~~~~e~~-- 183 (290)
T PF01212_consen 107 TPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALG-VSLAEIA-- 183 (290)
T ss_dssp -HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHH-HHHHHHH--
T ss_pred CHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhccc-ccHHHHh--
Confidence 688999999998874444443 33333 378889999999999999999999 75 899885444 2344444
Q ss_pred HHHcCCCEEEecC
Q 022982 110 CKQVGFDTIELNV 122 (289)
Q Consensus 110 ~k~lGF~~IEISd 122 (289)
-+||.+=||-
T Consensus 184 ---~~~D~v~~~~ 193 (290)
T PF01212_consen 184 ---AGADSVSFGG 193 (290)
T ss_dssp ---TTSSEEEEET
T ss_pred ---hhCCEEEEEE
Confidence 7899999884
No 287
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=78.80 E-value=19 Score=34.19 Aligned_cols=103 Identities=19% Similarity=0.242 Sum_probs=57.0
Q ss_pred chHHHHHHHHHHcCCCEEEecCCccc------------C-ChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccc
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVGSLE------------I-PEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRA 166 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~------------i-~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~ 166 (289)
+.+.+..+.+++.|||.|||+-|+=. + .++.-.++++.+++. + +| +.+|... |
T Consensus 75 ~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~---~p-v~vKir~---g------ 141 (319)
T TIGR00737 75 DTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVD---IP-VTVKIRI---G------ 141 (319)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcC---CC-EEEEEEc---c------
Confidence 34555566778899999999877521 1 223334556666553 2 22 5555321 1
Q ss_pred cccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEecccccc-CCCCccHHHHHHHHhccC
Q 022982 167 FGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK-HADSLRADIIAKVIGRLG 229 (289)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d-~~G~~r~d~v~~ii~~l~ 229 (289)
|. .+....++.++..-++|++.|.+-+|-... -.|....+.+.+|.+.++
T Consensus 142 ---------~~----~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ 192 (319)
T TIGR00737 142 ---------WD----DAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVR 192 (319)
T ss_pred ---------cC----CCcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCC
Confidence 10 011234566777778999999998872110 123344555555555444
No 288
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=78.79 E-value=35 Score=34.16 Aligned_cols=126 Identities=22% Similarity=0.336 Sum_probs=86.9
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCcccCChhH
Q 022982 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLEIPEET 131 (289)
Q Consensus 53 yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~i~~~~ 131 (289)
.|+-+=||+||-.+++++.|+..++..+++=- ....-.|+.+--+|..+ .+.++.+++.||+ -||=|--++.++.
T Consensus 87 ~v~ti~~GGGTPslL~~~~l~~ll~~l~~~~~--~~~~~~EitiE~nP~~~~~e~~~~l~~~GvN--RiSlGVQsf~~~~ 162 (416)
T COG0635 87 EVKTIYFGGGTPSLLSPEQLERLLKALRELFN--DLDPDAEITIEANPGTVEAEKFKALKEAGVN--RISLGVQSFNDEV 162 (416)
T ss_pred eEEEEEECCCccccCCHHHHHHHHHHHHHhcc--cCCCCceEEEEeCCCCCCHHHHHHHHHcCCC--EEEeccccCCHHH
Confidence 48888899999999999999999999987641 01112344444455543 4678889999999 5566766666544
Q ss_pred ------------HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccC
Q 022982 132 ------------LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 199 (289)
Q Consensus 132 ------------r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA 199 (289)
-...++.+++.||.-.. +-.-.+ .|. +|.+++.+..+..++.|.
T Consensus 163 lk~lgR~h~~~~~~~a~~~~~~~g~~~in-~DLIyg----------------lP~-------QT~~~~~~~l~~a~~l~p 218 (416)
T COG0635 163 LKALGRIHDEEEAKEAVELARKAGFTSIN-IDLIYG----------------LPG-------QTLESLKEDLEQALELGP 218 (416)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCCcEE-EEeecC----------------CCC-------CCHHHHHHHHHHHHhCCC
Confidence 44567777777766322 111111 122 258999999999999999
Q ss_pred cEEEEec
Q 022982 200 DMIMIDS 206 (289)
Q Consensus 200 ~~ViiEa 206 (289)
+.|=+.+
T Consensus 219 dhis~y~ 225 (416)
T COG0635 219 DHLSLYS 225 (416)
T ss_pred CEEEEee
Confidence 9998877
No 289
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=78.65 E-value=36 Score=28.05 Aligned_cols=96 Identities=13% Similarity=0.065 Sum_probs=51.9
Q ss_pred HHHHHHHhhccc-ccEEEecCccccccChhHH--HHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 022982 42 VLEDIFESMGQF-VDGLKFSGGSHSLMPKPFI--EEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (289)
Q Consensus 42 ~~~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l--~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~I 118 (289)
...+..+.+.+. +|++-++.-.......... +....+.+.+++++......-... +.+....+.+++.|+|.|
T Consensus 13 ~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~g~d~v 88 (200)
T cd04722 13 DPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAA----AAVDIAAAAARAAGADGV 88 (200)
T ss_pred HHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCch----hhhhHHHHHHHHcCCCEE
Confidence 334444444443 7888887644333322112 124455666777655432210000 011122468899999999
Q ss_pred EecCCcccCChhHHHHHHHHHHHc
Q 022982 119 ELNVGSLEIPEETLLRYVRLVKSA 142 (289)
Q Consensus 119 EISdGti~i~~~~r~~lI~~~~~~ 142 (289)
+|..+....+ +.-.++++.+++.
T Consensus 89 ~l~~~~~~~~-~~~~~~~~~i~~~ 111 (200)
T cd04722 89 EIHGAVGYLA-REDLELIRELREA 111 (200)
T ss_pred EEeccCCcHH-HHHHHHHHHHHHh
Confidence 9999886553 3334667777764
No 290
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=78.46 E-value=20 Score=32.71 Aligned_cols=123 Identities=15% Similarity=0.242 Sum_probs=76.2
Q ss_pred chhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecC------C-cHHHHHHHhCCchHHHHHHHHH
Q 022982 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST------G-DWAEHLIRNGPSAFKEYVEDCK 111 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~------G-tlfE~a~~qg~~~~~~yl~~~k 111 (289)
....++.+.+.|-+| ++.+-.++|. .++.--++++..+|.+++ | ...|.-+.+ .++|-
T Consensus 16 t~~~i~~lc~~A~~~------~~~avcv~p~-~v~~a~~~l~~~~v~v~tVigFP~G~~~~~~K~~E--------~~~Av 80 (211)
T TIGR00126 16 TEEDIITLCAQAKTY------KFAAVCVNPS-YVPLAKELLKGTEVRICTVVGFPLGASTTDVKLYE--------TKEAI 80 (211)
T ss_pred CHHHHHHHHHHHHhh------CCcEEEeCHH-HHHHHHHHcCCCCCeEEEEeCCCCCCCcHHHHHHH--------HHHHH
Confidence 566888888888877 7777666664 577766777777887763 4 234443333 25678
Q ss_pred HcCCCEEEecCCcccCChhHHHH---HHHHHHHc--C--CcccceeeeecCCCCCCCccccccccccccCCCCccccccH
Q 022982 112 QVGFDTIELNVGSLEIPEETLLR---YVRLVKSA--G--LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184 (289)
Q Consensus 112 ~lGF~~IEISdGti~i~~~~r~~---lI~~~~~~--G--~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~ 184 (289)
+.|-|.|.+--..-.+-..++.. -|+.+++. | +||+-|.+. + +.
T Consensus 81 ~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~-----------------------L------~~ 131 (211)
T TIGR00126 81 KYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGL-----------------------L------TD 131 (211)
T ss_pred HcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCC-----------------------C------CH
Confidence 89999999865544333333322 23333321 3 333333222 1 24
Q ss_pred HHHHHHHHHHHHccCcEEEEe
Q 022982 185 DLLIRRAERCLEAGADMIMID 205 (289)
Q Consensus 185 ~~~I~~~~~dLeAGA~~ViiE 205 (289)
++++...+-..++|||+|=+=
T Consensus 132 ~ei~~a~~ia~eaGADfvKTs 152 (211)
T TIGR00126 132 EEIRKACEICIDAGADFVKTS 152 (211)
T ss_pred HHHHHHHHHHHHhCCCEEEeC
Confidence 677888999999999998653
No 291
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=78.32 E-value=7.5 Score=36.45 Aligned_cols=93 Identities=13% Similarity=0.229 Sum_probs=56.3
Q ss_pred HHHHhhcccccEEEecCccc----cccChhHHHHHHHHHHhCCceecC--CcH---------HHHHHHhCCc----hHHH
Q 022982 45 DIFESMGQFVDGLKFSGGSH----SLMPKPFIEEVVKRAHQHDVYVST--GDW---------AEHLIRNGPS----AFKE 105 (289)
Q Consensus 45 DlLe~ag~yID~lKfg~GTs----~l~p~~~l~eKI~l~~~~gV~v~~--Gtl---------fE~a~~qg~~----~~~~ 105 (289)
+.++..++.+|.+=.-|-.. .+.+. ...+.++.+|++|+++.+ |+| +..++ .++. -++.
T Consensus 17 ~~~~~~~~~lt~v~p~w~~~~~~g~~~~~-~~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l-~~~~~r~~fi~~ 94 (313)
T cd02874 17 ESLRANAPYLTYIAPFWYGVDADGTLTGL-PDERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVL-SNPEARQRLINN 94 (313)
T ss_pred HHHHHhcCCCCEEEEEEEEEcCCCCCCCC-CCHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHh-cCHHHHHHHHHH
Confidence 34455566666554333210 12222 246889999999998886 554 33333 2222 3677
Q ss_pred HHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHH
Q 022982 106 YVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKS 141 (289)
Q Consensus 106 yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~ 141 (289)
.++.+++.|||.|+|.=-. ++.+++..++..+++
T Consensus 95 iv~~l~~~~~DGidiDwE~--~~~~d~~~~~~fl~~ 128 (313)
T cd02874 95 ILALAKKYGYDGVNIDFEN--VPPEDREAYTQFLRE 128 (313)
T ss_pred HHHHHHHhCCCcEEEeccc--CCHHHHHHHHHHHHH
Confidence 7888899999999996433 455666655555444
No 292
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=78.27 E-value=26 Score=34.73 Aligned_cols=85 Identities=14% Similarity=0.143 Sum_probs=54.5
Q ss_pred EEEecCccccccCh---h----HHHHHHHH-HHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEE--------
Q 022982 56 GLKFSGGSHSLMPK---P----FIEEVVKR-AHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIE-------- 119 (289)
Q Consensus 56 ~lKfg~GTs~l~p~---~----~l~eKI~l-~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IE-------- 119 (289)
++|+..+|+..++. . .+++-+++ |-.-++.+|+|.=.|.--.+ .+-+-.++|+++|+-.|-
T Consensus 129 Ilkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~tvy~Gs~~E~~ml~---~l~~i~~ea~~~GlPlv~~~YpRG~~ 205 (348)
T PRK09250 129 ILKLNHNELLSYPNTYDQALTASVEDALRLGAVAVGATIYFGSEESRRQIE---EISEAFEEAHELGLATVLWSYLRNSA 205 (348)
T ss_pred EEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCCHHHHHHHH---HHHHHHHHHHHhCCCEEEEecccCcc
Confidence 58999888774433 1 24444444 33334588999877766665 588999999999999985
Q ss_pred ecCCcc-cCChhHHHHHHHHHHHcC
Q 022982 120 LNVGSL-EIPEETLLRYVRLVKSAG 143 (289)
Q Consensus 120 ISdGti-~i~~~~r~~lI~~~~~~G 143 (289)
+++..- +-..+.-.-..+.+.+.|
T Consensus 206 i~~~~d~~~~~d~Ia~AaRiaaELG 230 (348)
T PRK09250 206 FKKDGDYHTAADLTGQANHLAATIG 230 (348)
T ss_pred cCCcccccccHHHHHHHHHHHHHHc
Confidence 444331 223444555556666655
No 293
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=78.21 E-value=48 Score=31.60 Aligned_cols=110 Identities=15% Similarity=0.084 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecC-CCCCCCccccccccccccCCCC
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFN-KSDIPSDRDRAFGAYVARAPRS 177 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~-~~evg~~~d~~~~~~~~~~~~~ 177 (289)
.+.+.++++-+-|.+.|=+.-.| ..++.++|.++++.+++. .+.+-+ ...+|
T Consensus 26 a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~-------~~grvpviaG~g----------------- 81 (299)
T COG0329 26 ALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEA-------VGGRVPVIAGVG----------------- 81 (299)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHH-------HCCCCcEEEecC-----------------
Confidence 57778888888999988775444 379999999999999994 322111 11111
Q ss_pred ccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecC
Q 022982 178 TEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT 238 (289)
Q Consensus 178 ~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklifEAP 238 (289)
..+.++-|+.++..-++|||-|++=.-=.+....+---+-...|++..++.-++.--|
T Consensus 82 ---~~~t~eai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P 139 (299)
T COG0329 82 ---SNSTAEAIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIP 139 (299)
T ss_pred ---CCcHHHHHHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 1147888999999999999999997753333332223333455555555555666666
No 294
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=78.13 E-value=5 Score=37.07 Aligned_cols=91 Identities=15% Similarity=0.105 Sum_probs=55.9
Q ss_pred HHHHHHhCCc-eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeee
Q 022982 75 VVKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVM 153 (289)
Q Consensus 75 KI~l~~~~gV-~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k 153 (289)
-++...+++| .|.-+.=.| ..-+..+.+.+-|+++|||.--| ..-.+.|+.+++ +++.+
T Consensus 8 ~~~~l~~~~vi~Vvr~~~~~--------~a~~~~~al~~gGi~~iEiT~~t-----p~a~~~i~~l~~-------~~~~~ 67 (222)
T PRK07114 8 VLTAMKATGMVPVFYHADVE--------VAKKVIKACYDGGARVFEFTNRG-----DFAHEVFAELVK-------YAAKE 67 (222)
T ss_pred HHHHHHhCCEEEEEEcCCHH--------HHHHHHHHHHHCCCCEEEEeCCC-----CcHHHHHHHHHH-------HHHhh
Confidence 3466678888 444454333 34456678899999999997644 334456766654 23333
Q ss_pred cCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEec
Q 022982 154 FNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 154 ~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEa 206 (289)
++.--+|+ |..++ .++++..++|||++++-=+
T Consensus 68 ~p~~~vGa------GTVl~---------------~e~a~~a~~aGA~FiVsP~ 99 (222)
T PRK07114 68 LPGMILGV------GSIVD---------------AATAALYIQLGANFIVTPL 99 (222)
T ss_pred CCCeEEee------EeCcC---------------HHHHHHHHHcCCCEEECCC
Confidence 22111220 12233 6888999999999999655
No 295
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=78.13 E-value=18 Score=32.45 Aligned_cols=97 Identities=15% Similarity=0.203 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCCh-hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIPE-ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~-~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 180 (289)
..-+..+.+.+.|++.+-+=|=...... ..-.+.|+.+.+. +++... +| + -
T Consensus 33 ~~~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~-------~~~~l~---v~--G-----G----------- 84 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIEA-------VGVPVQ---LG--G-----G----------- 84 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHHH-------cCCcEE---Ec--C-----C-----------
Confidence 3444555567789999988776654422 3445566666552 222111 00 0 0
Q ss_pred cccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEe
Q 022982 181 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFE 236 (289)
Q Consensus 181 ~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklifE 236 (289)
+.| .+.++..+++||+.|++-+.-+. +.+.+.++.+.++.++++.-
T Consensus 85 i~~----~~~~~~~~~~Ga~~v~iGs~~~~------~~~~~~~i~~~~g~~~i~~s 130 (241)
T PRK13585 85 IRS----AEDAASLLDLGVDRVILGTAAVE------NPEIVRELSEEFGSERVMVS 130 (241)
T ss_pred cCC----HHHHHHHHHcCCCEEEEChHHhh------ChHHHHHHHHHhCCCcEEEE
Confidence 111 46677788899999999664322 35677888877777777653
No 296
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=78.06 E-value=4.8 Score=38.68 Aligned_cols=53 Identities=19% Similarity=0.415 Sum_probs=38.8
Q ss_pred CchHHHHHHHHHHcCCCEEEe---------cCCcccCC-hhHHHHHHHHHHHcCCcccceeee
Q 022982 100 PSAFKEYVEDCKQVGFDTIEL---------NVGSLEIP-EETLLRYVRLVKSAGLKAKPKFAV 152 (289)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEI---------SdGti~i~-~~~r~~lI~~~~~~G~~v~~E~g~ 152 (289)
|+...+-++.+|++||++|++ ..|..+.+ ..+..++|+.|+++||.|+--+|-
T Consensus 23 ~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vilrpGp 85 (319)
T PF01301_consen 23 PEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVILRPGP 85 (319)
T ss_dssp GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEEEEEES
T ss_pred hhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEEecccc
Confidence 346788899999999999987 46777776 456789999999999999877764
No 297
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=78.00 E-value=9.4 Score=34.78 Aligned_cols=69 Identities=17% Similarity=0.224 Sum_probs=48.4
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 180 (289)
+...+-.+.+.+-||.+|||.- ......+.|+++++.. |++-+ |+ |..++
T Consensus 16 ~~a~~ia~al~~gGi~~iEit~-----~tp~a~~~I~~l~~~~----~~~~v-------GA------GTVl~-------- 65 (201)
T PRK06015 16 EHAVPLARALAAGGLPAIEITL-----RTPAALDAIRAVAAEV----EEAIV-------GA------GTILN-------- 65 (201)
T ss_pred HHHHHHHHHHHHCCCCEEEEeC-----CCccHHHHHHHHHHHC----CCCEE-------ee------EeCcC--------
Confidence 3456677888999999999864 4566778999998742 33322 10 12222
Q ss_pred cccHHHHHHHHHHHHHccCcEEEEec
Q 022982 181 VEDVDLLIRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 181 ~~~~~~~I~~~~~dLeAGA~~ViiEa 206 (289)
.+++++.++|||++++-=+
T Consensus 66 -------~e~a~~ai~aGA~FivSP~ 84 (201)
T PRK06015 66 -------AKQFEDAAKAGSRFIVSPG 84 (201)
T ss_pred -------HHHHHHHHHcCCCEEECCC
Confidence 5788999999999998654
No 298
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=77.83 E-value=6.1 Score=37.73 Aligned_cols=74 Identities=8% Similarity=0.101 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHHhCCceec--CCcHHHHHHHhCCc----hHHHHHHHHHHcCCCEEEecCCcccCC----hhHHHHHHHH
Q 022982 69 KPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPS----AFKEYVEDCKQVGFDTIELNVGSLEIP----EETLLRYVRL 138 (289)
Q Consensus 69 ~~~l~eKI~l~~~~gV~v~--~GtlfE~a~~qg~~----~~~~yl~~~k~lGF~~IEISdGti~i~----~~~r~~lI~~ 138 (289)
...+...|.-+|+.|++|. .|||-...+.+... -++.|.+.++.+||+.|.|.=-.-... .+.+.++|+.
T Consensus 53 ~~~~~~~i~~lk~~G~kViiS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~ 132 (294)
T cd06543 53 GGWIKSDIAALRAAGGDVIVSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALAL 132 (294)
T ss_pred chhHHHHHHHHHHcCCeEEEEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHH
Confidence 4568889999999998554 58876544443322 266788899999999999842221122 2678888888
Q ss_pred HHHc
Q 022982 139 VKSA 142 (289)
Q Consensus 139 ~~~~ 142 (289)
++++
T Consensus 133 Lq~~ 136 (294)
T cd06543 133 LQKE 136 (294)
T ss_pred HHHH
Confidence 8875
No 299
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=77.80 E-value=10 Score=34.77 Aligned_cols=22 Identities=27% Similarity=0.444 Sum_probs=16.5
Q ss_pred HHHHHHHHccCcEEEEecccccc
Q 022982 189 RRAERCLEAGADMIMIDSDDVCK 211 (289)
Q Consensus 189 ~~~~~dLeAGA~~ViiEarGI~d 211 (289)
++++..+++|||-|++=+ .|++
T Consensus 198 e~i~~~~~~gaD~vvvGS-ai~~ 219 (244)
T PRK13125 198 EDARDALSAGADGVVVGT-AFIE 219 (244)
T ss_pred HHHHHHHHcCCCEEEECH-HHHH
Confidence 677777899999998864 4543
No 300
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=77.80 E-value=31 Score=35.29 Aligned_cols=183 Identities=15% Similarity=0.147 Sum_probs=110.9
Q ss_pred chhHHHHHHHhhccccc----------EEEecCccccc--cChhHH-HHHHHHHHhCCceecCCcHHHHHHHhCCchHHH
Q 022982 39 SHNVLEDIFESMGQFVD----------GLKFSGGSHSL--MPKPFI-EEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKE 105 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID----------~lKfg~GTs~l--~p~~~l-~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~ 105 (289)
-...++.+|+..|==+- .-+.+-++... .| .+ +--..|++++||+.+.--|. -|.+..++
T Consensus 206 ~~~~i~~lL~~lGI~v~~~lp~~~~~eL~~~~~~~~~c~~~P--~ls~aa~~Le~~~gvp~~~~P~P-----iGi~~Td~ 278 (457)
T CHL00073 206 VASQLTLELKRQGIKVSGWLPSQRYTDLPSLGEGVYVCGVNP--FLSRTATTLMRRRKCKLIGAPFP-----IGPDGTRA 278 (457)
T ss_pred cHHHHHHHHHHcCCeEeEEeCCCCHHHHHhhCcccEEEEcCc--chHHHHHHHHHHhCCceeecCCc-----CcHHHHHH
Confidence 35788899987774332 22222221111 12 22 22344446666644432222 34557888
Q ss_pred HHHHHHHc-CCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccH
Q 022982 106 YVEDCKQV-GFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184 (289)
Q Consensus 106 yl~~~k~l-GF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~ 184 (289)
+++.+.++ |.. .-.+ .+++.+++..+.+.-... .|||-. +. -++
T Consensus 279 fLr~Ia~~~G~~-------pe~l-~~Er~rl~dal~d~~~~L---~GKrva--------------i~----------Gdp 323 (457)
T CHL00073 279 WIEKICSVFGIE-------PQGL-EEREEQIWESLKDYLDLV---RGKSVF--------------FM----------GDN 323 (457)
T ss_pred HHHHHHHHhCcC-------HHHH-HHHHHHHHHHHHHHHHHH---CCCEEE--------------EE----------CCC
Confidence 88877775 622 2335 677778888777731111 244321 01 135
Q ss_pred HHHHHHHHHHHHccCcEEEEeccccccCCCCccH---HHHHHHHhccCC-CceEEecCCchhHHHHHHHhCCCcccc-cC
Q 022982 185 DLLIRRAERCLEAGADMIMIDSDDVCKHADSLRA---DIIAKVIGRLGL-EKTMFEATNPRTSEWFIRRYGPKVNLF-VD 259 (289)
Q Consensus 185 ~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~---d~v~~ii~~l~~-eklifEAP~k~qQ~~~I~~fG~~VNLg-I~ 259 (289)
...+..++...+.|..-|.+ |....+..+.. +.+.++++..+. ..+|.|-++...|..+|++..||+=++ +
T Consensus 324 ~~~i~LarfL~elGmevV~v---gt~~~~~~~~~~d~~~l~~~~~~~~~~~~vive~~D~~el~~~i~~~~pDLlIgG~- 399 (457)
T CHL00073 324 LLEISLARFLIRCGMIVYEI---GIPYMDKRYQAAELALLEDTCRKMNVPMPRIVEKPDNYNQIQRIRELQPDLAITGM- 399 (457)
T ss_pred cHHHHHHHHHHHCCCEEEEE---EeCCCChhhhHHHHHHHHHHhhhcCCCCcEEEeCCCHHHHHHHHhhCCCCEEEccc-
Confidence 56688899999999999988 44444444433 344455555664 578999999999999999999999987 8
Q ss_pred CCCchhhhh
Q 022982 260 HSQVMDLEC 268 (289)
Q Consensus 260 ~~eVl~LE~ 268 (289)
.+-++||+
T Consensus 400 -~~~~Pl~~ 407 (457)
T CHL00073 400 -AHANPLEA 407 (457)
T ss_pred -cccCchhh
Confidence 56677764
No 301
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=77.75 E-value=5.9 Score=35.29 Aligned_cols=129 Identities=17% Similarity=0.203 Sum_probs=73.5
Q ss_pred chhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecC-CcHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022982 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~-GtlfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (289)
+...++.+++.+-+| ++-+ .++++..++.-.+..+..++.+.. ++|---..... .++.+ .++|-++|-|.
T Consensus 15 t~~~i~~~~~~a~~~------~~~a-v~v~p~~v~~~~~~l~~~~~~v~~~~~fp~g~~~~~-~k~~e-ve~A~~~GAde 85 (203)
T cd00959 15 TEEDIRKLCDEAKEY------GFAA-VCVNPCFVPLAREALKGSGVKVCTVIGFPLGATTTE-VKVAE-AREAIADGADE 85 (203)
T ss_pred CHHHHHHHHHHHHHc------CCCE-EEEcHHHHHHHHHHcCCCCcEEEEEEecCCCCCcHH-HHHHH-HHHHHHcCCCE
Confidence 677888888888763 2222 334556677766666767777665 33211110000 02333 77889999999
Q ss_pred EEecCCcccCCh---hHHHHHHHHHHHc--C--CcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHH
Q 022982 118 IELNVGSLEIPE---ETLLRYVRLVKSA--G--LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRR 190 (289)
Q Consensus 118 IEISdGti~i~~---~~r~~lI~~~~~~--G--~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~ 190 (289)
|++.-..-.+.. +.-.+-|..+.+. | ++|.-|.+. . +.+++..-
T Consensus 86 vdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~-----------------------l------~~~~i~~a 136 (203)
T cd00959 86 IDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGL-----------------------L------TDEEIIKA 136 (203)
T ss_pred EEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCC-----------------------C------CHHHHHHH
Confidence 999655443321 2122333333332 2 222222222 1 36778888
Q ss_pred HHHHHHccCcEEEEe
Q 022982 191 AERCLEAGADMIMID 205 (289)
Q Consensus 191 ~~~dLeAGA~~ViiE 205 (289)
.+-..|+|||+|=+-
T Consensus 137 ~ria~e~GaD~IKTs 151 (203)
T cd00959 137 CEIAIEAGADFIKTS 151 (203)
T ss_pred HHHHHHhCCCEEEcC
Confidence 999999999988765
No 302
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=77.75 E-value=16 Score=34.41 Aligned_cols=74 Identities=22% Similarity=0.249 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC------------ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEI------------PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 169 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i------------~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~ 169 (289)
.+.++.+.+.+.|+|+||++=++-.. .++.-.++++.+++.= -+| +.+|-..
T Consensus 114 ~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~P-v~vKl~~------------- 177 (299)
T cd02940 114 DWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAV--KIP-VIAKLTP------------- 177 (299)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhc--CCC-eEEECCC-------------
Confidence 45556666667799999998886543 3556677888887631 123 5565310
Q ss_pred ccccCCCCccccccHHHHHHHHHHHHHccCcEEEE
Q 022982 170 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 204 (289)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~Vii 204 (289)
+..++.+.++...++||+.|++
T Consensus 178 -------------~~~~~~~~a~~~~~~Gadgi~~ 199 (299)
T cd02940 178 -------------NITDIREIARAAKEGGADGVSA 199 (299)
T ss_pred -------------CchhHHHHHHHHHHcCCCEEEE
Confidence 1334567777788999999984
No 303
>PRK10425 DNase TatD; Provisional
Probab=77.68 E-value=61 Score=30.18 Aligned_cols=169 Identities=18% Similarity=0.191 Sum_probs=102.1
Q ss_pred CCCCceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccC----hhHHHHHHHHHHhCCceecCC--c--HH-
Q 022982 22 RRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMP----KPFIEEVVKRAHQHDVYVSTG--D--WA- 92 (289)
Q Consensus 22 R~~GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p----~~~l~eKI~l~~~~gV~v~~G--t--lf- 92 (289)
+..|+.-++.+|. .++..+..++.+..|=+ +..+.|-+.-+- ++.+++.-+++++..| +.-| | +.
T Consensus 25 ~~~gv~~~i~~~~----~~~~~~~~~~l~~~~~~-v~~~~GiHP~~~~~~~~~~~~~l~~~~~~~~~-vaIGEiGLDy~~ 98 (258)
T PRK10425 25 FAAGVNGMLITGT----NLRESQQAQKLARQYPS-CWSTAGVHPHDSSQWQAATEEAIIELAAQPEV-VAIGECGLDFNR 98 (258)
T ss_pred HHCCCCEEEEeCC----CHHHHHHHHHHHHhCCC-EEEEEEeCcCccccCCHHHHHHHHHhccCCCE-EEEeeeeecccc
Confidence 3558888999999 66689999999988854 888888876442 3334444444443332 2223 3 22
Q ss_pred --H-HHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccc
Q 022982 93 --E-HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 169 (289)
Q Consensus 93 --E-~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~ 169 (289)
+ ...++. -|+..++.|++++...+==|-+.. + ++++.+++..-+ .+. ++-...+ ++
T Consensus 99 ~~~~~~~Q~~--vF~~ql~lA~~~~~Pv~iH~r~a~----~---~~l~iL~~~~~~-~~~-~i~H~fs-----G~----- 157 (258)
T PRK10425 99 NFSTPEEQER--AFVAQLAIAAELNMPVFMHCRDAH----E---RFMALLEPWLDK-LPG-AVLHCFT-----GT----- 157 (258)
T ss_pred CCCCHHHHHH--HHHHHHHHHHHhCCCeEEEEeCch----H---HHHHHHHHhccC-CCC-eEEEecC-----CC-----
Confidence 1 112334 799999999999998874444332 3 444444442111 111 2211111 11
Q ss_pred ccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecCCc
Q 022982 170 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNP 240 (289)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklifEAP~k 240 (289)
.+.+++.++.|.+.=+- --++... +...+.++++.+|+++|+.|...|
T Consensus 158 ------------------~~~~~~~l~~G~~~si~--g~i~~~~---~~~~~~~~~~~ipldrlLlETDaP 205 (258)
T PRK10425 158 ------------------REEMQACLARGLYIGIT--GWVCDER---RGLELRELLPLIPAERLLLETDAP 205 (258)
T ss_pred ------------------HHHHHHHHHCCCEEEEC--ceeeccc---ccHHHHHHHHhCChHHEEEeccCC
Confidence 57788889998776441 1122211 344677889999999999997765
No 304
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=77.67 E-value=10 Score=37.31 Aligned_cols=85 Identities=25% Similarity=0.261 Sum_probs=56.7
Q ss_pred CCchHHHHHHHHHHcCCCEEEec---CCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCC
Q 022982 99 GPSAFKEYVEDCKQVGFDTIELN---VGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (289)
Q Consensus 99 g~~~~~~yl~~~k~lGF~~IEIS---dGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~ 175 (289)
+++.+.+-++++-+-|+|.|=.. ...-.+|.++|.++++.+.+. +..|-|.+-.. +.
T Consensus 144 d~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~---a~~~TG~~~~y--------------~~--- 203 (367)
T cd08205 144 SPEELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRR---ANEETGRKTLY--------------AP--- 203 (367)
T ss_pred CHHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHH---HHHhhCCcceE--------------EE---
Confidence 34456666777777899998543 333478999999999988873 11122221110 00
Q ss_pred CCccccccHHHHHHHHHHHHHccCcEEEEec
Q 022982 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 176 ~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEa 206 (289)
-.+.+.++++++++...++||+.||+--
T Consensus 204 ---nit~~~~e~i~~a~~a~~~Gad~vmv~~ 231 (367)
T cd08205 204 ---NITGDPDELRRRADRAVEAGANALLINP 231 (367)
T ss_pred ---EcCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 0012368999999999999999999976
No 305
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=77.59 E-value=63 Score=30.90 Aligned_cols=79 Identities=22% Similarity=0.369 Sum_probs=49.7
Q ss_pred EEEecCccccccChhHHHHHHHHHHhCC---c----eecC-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-c
Q 022982 56 GLKFSGGSHSLMPKPFIEEVVKRAHQHD---V----YVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL-E 126 (289)
Q Consensus 56 ~lKfg~GTs~l~p~~~l~eKI~l~~~~g---V----~v~~-GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti-~ 126 (289)
-+-|.+|=-.+.|.+.+++.+++++++| + .+.| |+++. ++.++.+++.|+ .|-||=... +
T Consensus 60 ~i~~~GGEPll~~~~~~~~~~~~~~~~~~~~~~~~~~i~TNG~ll~----------~~~~~~l~~~~~-~v~iSlDg~~~ 128 (370)
T PRK13758 60 SFAFQGGEPTLAGLEFFEELMELQRKHNYKNLKIYNSLQTNGTLID----------ESWAKFLSENKF-LVGLSMDGPKE 128 (370)
T ss_pred EEEEECCccccCChHHHHHHHHHHHHhccCCCeEEEEEEecCEecC----------HHHHHHHHHcCc-eEEEeecCCHH
Confidence 4568889888888788899999999986 3 2345 77653 233334455676 788873332 2
Q ss_pred C------------ChhHHHHHHHHHHHcCCc
Q 022982 127 I------------PEETLLRYVRLVKSAGLK 145 (289)
Q Consensus 127 i------------~~~~r~~lI~~~~~~G~~ 145 (289)
+ +.+.-.+-|+.+++.|..
T Consensus 129 ~hd~~R~~~~g~~~f~~v~~~i~~l~~~~~~ 159 (370)
T PRK13758 129 IHNLNRKDCCGLDTFSKVERAAELFKKYKVE 159 (370)
T ss_pred HhccccCCCCCCccHHHHHHHHHHHHHhCCC
Confidence 1 122234557777777654
No 306
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=77.56 E-value=7.5 Score=35.88 Aligned_cols=74 Identities=23% Similarity=0.176 Sum_probs=50.7
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHc--CCcccceeeeecCCCCCCCccccccccccccCCCC
Q 022982 100 PSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (289)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~--G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 177 (289)
|+.+..|-..++.+||..|=+. ++-.-.+ .++|+++++. +..+.-.+|++.
T Consensus 134 ~e~~~ayA~aae~~g~~ivyLe-~SG~~~~---~e~I~~v~~~~~~~pl~vGGGIrs----------------------- 186 (219)
T cd02812 134 PEDAAAYALAAEYLGMPIVYLE-YSGAYGP---PEVVRAVKKVLGDTPLIVGGGIRS----------------------- 186 (219)
T ss_pred HHHHHHHHHHHHHcCCeEEEeC-CCCCcCC---HHHHHHHHHhcCCCCEEEeCCCCC-----------------------
Confidence 4567889999999999998887 5444433 3456666653 455555555521
Q ss_pred ccccccHHHHHHHHHHHHHccCcEEEEecccccc
Q 022982 178 TEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK 211 (289)
Q Consensus 178 ~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d 211 (289)
.++++..++||||.|++ +.-+++
T Consensus 187 ----------~e~a~~l~~aGAD~VVV-Gsai~~ 209 (219)
T cd02812 187 ----------GEQAKEMAEAGADTIVV-GNIVEE 209 (219)
T ss_pred ----------HHHHHHHHHcCCCEEEE-CchhhC
Confidence 57888899999999999 333444
No 307
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=77.55 E-value=38 Score=32.67 Aligned_cols=128 Identities=12% Similarity=0.145 Sum_probs=84.7
Q ss_pred hHHHHHHHhhcc--cccEEEecCccccccChhHHHHHHHHHHhC----CceecC---CcHHHHHHHhCCchHHHHHHHHH
Q 022982 41 NVLEDIFESMGQ--FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH----DVYVST---GDWAEHLIRNGPSAFKEYVEDCK 111 (289)
Q Consensus 41 ~~~~DlLe~ag~--yID~lKfg~GTs~l~p~~~l~eKI~l~~~~----gV~v~~---GtlfE~a~~qg~~~~~~yl~~~k 111 (289)
..++.+++.... -|.-+-|.+|--.+.+.+.|.+.++.+++. +|.+.+ +++-.. --++.++..+
T Consensus 145 ~~~~~~i~~i~~~~~i~eV~lsGGDPLl~~d~~L~~ll~~L~~i~~~~~IRi~tr~~~~~P~r-------it~el~~~L~ 217 (331)
T TIGR00238 145 KKWQKALDYIAEHPEIIEILISGGDPLMAKDHELEWLLKRLEEIPHLVRLRIGTRLPVVIPQR-------ITDELCELLA 217 (331)
T ss_pred HHHHHHHHHHHhCCCcCEEEEECCccccCCHHHHHHHHHHHHhcCCccEEEeecCCCccCchh-------cCHHHHHHHH
Confidence 455555554433 366788999999888876788888888774 455543 333211 1246777778
Q ss_pred HcCCCEEEec--CCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHH
Q 022982 112 QVGFDTIELN--VGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (289)
Q Consensus 112 ~lGF~~IEIS--dGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~ 189 (289)
+.|+..+=+| ++.-+++++. .+.|++++++|+.+.-...+-.+ + . .+++.+.+
T Consensus 218 ~~~~~~~~vsh~nh~~Ei~~~~-~~ai~~L~~aGi~v~~qtvLl~g---v--n-------------------D~~~~l~~ 272 (331)
T TIGR00238 218 SFELQLMLVTHINHCNEITEEF-AEAMKKLRTVNVTLLNQSVLLRG---V--N-------------------DRAQILAK 272 (331)
T ss_pred hcCCcEEEEccCCChHhCCHHH-HHHHHHHHHcCCEEEeecceECC---c--C-------------------CCHHHHHH
Confidence 8899998888 5555665554 58899999999885555444211 1 1 13666777
Q ss_pred HHHHHHHccCc
Q 022982 190 RAERCLEAGAD 200 (289)
Q Consensus 190 ~~~~dLeAGA~ 200 (289)
..+...++|+.
T Consensus 273 L~~~l~~~gV~ 283 (331)
T TIGR00238 273 LSIALFKVGII 283 (331)
T ss_pred HHHHHhhcCee
Confidence 88888888874
No 308
>PRK05985 cytosine deaminase; Provisional
Probab=77.36 E-value=9.8 Score=36.70 Aligned_cols=77 Identities=14% Similarity=0.195 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHHhCCceecC--CcHHHHHHHhCCchHHHHHHHHHHcCCC-EEEecCCc--ccCChhHHHHHHHHHHHcC
Q 022982 69 KPFIEEVVKRAHQHDVYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFD-TIELNVGS--LEIPEETLLRYVRLVKSAG 143 (289)
Q Consensus 69 ~~~l~eKI~l~~~~gV~v~~--GtlfE~a~~qg~~~~~~yl~~~k~lGF~-~IEISdGt--i~i~~~~r~~lI~~~~~~G 143 (289)
++.|++.+++|++||+.+.. ...-+.. . ..++++++.++++|+. .+-++=.+ -.++++++.+.|+++++.|
T Consensus 190 ~~~l~~~~~~A~~~g~~i~~Hv~e~~d~~--~--~~~~~~~e~~~~~g~~~~~~i~H~~~l~~~~~~~~~~~i~~lae~g 265 (391)
T PRK05985 190 EGQLDIVFGLAERHGVGIDIHLHEPGELG--A--FQLERIAARTRALGMQGRVAVSHAFCLGDLPEREVDRLAERLAEAG 265 (391)
T ss_pred HHHHHHHHHHHHHhCCCcEEeeCCCCCcc--H--HHHHHHHHHHHHhCCCCCEehhhhhhhhcCCHHHHHHHHHHHHHcC
Confidence 36788888999999976632 1100110 1 1455677777888885 23333332 2467777789999999998
Q ss_pred Ccccce
Q 022982 144 LKAKPK 149 (289)
Q Consensus 144 ~~v~~E 149 (289)
..|.+.
T Consensus 266 ~~v~~~ 271 (391)
T PRK05985 266 VAIMTN 271 (391)
T ss_pred CeEEEe
Confidence 887543
No 309
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=77.35 E-value=31 Score=31.62 Aligned_cols=114 Identities=11% Similarity=0.162 Sum_probs=68.7
Q ss_pred CCCceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceec---------CCcHHH
Q 022982 23 RFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS---------TGDWAE 93 (289)
Q Consensus 23 ~~GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~---------~GtlfE 93 (289)
..++....|=|+ + .....+.+|+...++ .-.||.++.+++.+++-.+.+-+. |.++ +-+|.|
T Consensus 74 ~~~~pi~vGGGI--r-s~e~v~~~l~~Ga~k-----vvigt~a~~~~~~l~~~~~~fg~~-ivvslD~~~g~v~~~gw~~ 144 (234)
T PRK13587 74 LTTKDIEVGGGI--R-TKSQIMDYFAAGINY-----CIVGTKGIQDTDWLKEMAHTFPGR-IYLSVDAYGEDIKVNGWEE 144 (234)
T ss_pred hcCCeEEEcCCc--C-CHHHHHHHHHCCCCE-----EEECchHhcCHHHHHHHHHHcCCC-EEEEEEeeCCEEEecCCcc
Confidence 335565566555 3 556666788765554 457999999999999887776322 3333 334544
Q ss_pred HHHHhCCchHHHHHHHHHHcCCCEEEec----CCcccCChhHHHHHHHHHHHc-CCcccceeee
Q 022982 94 HLIRNGPSAFKEYVEDCKQVGFDTIELN----VGSLEIPEETLLRYVRLVKSA-GLKAKPKFAV 152 (289)
Q Consensus 94 ~a~~qg~~~~~~yl~~~k~lGF~~IEIS----dGti~i~~~~r~~lI~~~~~~-G~~v~~E~g~ 152 (289)
. ..-...++++++.++|+..|=+. |||..=++-+ +++.+.+. +..+...-|+
T Consensus 145 ~----~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~~~---li~~l~~~~~ipvi~~GGi 201 (234)
T PRK13587 145 D----TELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFE---LTGQLVKATTIPVIASGGI 201 (234)
T ss_pred c----CCCCHHHHHHHHHHcCCCEEEEecccCcCCCCccCHH---HHHHHHHhCCCCEEEeCCC
Confidence 2 12357999999999998865433 4565544444 44444442 3444443333
No 310
>PRK02227 hypothetical protein; Provisional
Probab=77.20 E-value=54 Score=30.91 Aligned_cols=153 Identities=16% Similarity=0.187 Sum_probs=96.4
Q ss_pred hHHHHHHHhhcccccEEEecCccccccC--hhHHHHHHHHHHhC--CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCC
Q 022982 41 NVLEDIFESMGQFVDGLKFSGGSHSLMP--KPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFD 116 (289)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GTs~l~p--~~~l~eKI~l~~~~--gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~ 116 (289)
......+..+..=+||+|.|.--..=.+ .+.++..+...+.+ +..+.+-.|.++--...+ .-.+-.+.+++.||+
T Consensus 68 ~~~~aa~~~a~~GvDyVKvGl~~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~-~~~~l~~~a~~aGf~ 146 (238)
T PRK02227 68 TISLAALGAAATGADYVKVGLYGGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSV-SPLSLPAIAADAGFD 146 (238)
T ss_pred HHHHHHHHHHhhCCCEEEEcCCCCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCC-ChHHHHHHHHHcCCC
Confidence 4667788888888999999952111111 12333334444444 345555566664322221 234677889999999
Q ss_pred EEEecCC-------cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHH
Q 022982 117 TIELNVG-------SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (289)
Q Consensus 117 ~IEISdG-------ti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~ 189 (289)
.+=|... |--++.++..+++++++++|+. .|. . | + +. .+
T Consensus 147 g~MlDTa~Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~----~gL----A--G--------S-L~---------------~~ 192 (238)
T PRK02227 147 GAMLDTAIKDGKSLFDHMDEEELAEFVAEARSHGLM----SAL----A--G--------S-LK---------------FE 192 (238)
T ss_pred EEEEecccCCCcchHhhCCHHHHHHHHHHHHHcccH----hHh----c--c--------c-Cc---------------hh
Confidence 9988643 2369999999999999998766 233 1 0 0 11 23
Q ss_pred HHHHHHHccCcEEEEeccccc---cCCCCccHHHHHHHHhccC
Q 022982 190 RAERCLEAGADMIMIDSDDVC---KHADSLRADIIAKVIGRLG 229 (289)
Q Consensus 190 ~~~~dLeAGA~~ViiEarGI~---d~~G~~r~d~v~~ii~~l~ 229 (289)
.+..-..-+.|++=+=+ .+| |.++.++.+.|.++.+.+.
T Consensus 193 dip~L~~l~pD~lGfRg-avC~g~dR~~~id~~~V~~~~~~l~ 234 (238)
T PRK02227 193 DIPALKRLGPDILGVRG-AVCGGGDRTGRIDPELVAELREALR 234 (238)
T ss_pred hHHHHHhcCCCEEEech-hccCCCCcccccCHHHHHHHHHHhh
Confidence 34444577888775533 245 4678999999999987664
No 311
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=77.15 E-value=19 Score=34.93 Aligned_cols=80 Identities=21% Similarity=0.207 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHcC--CCEEEecCCcccC-------ChhHHHHHHHHHHHcCCcc----cceeeeecCCCCCCCccccccc
Q 022982 102 AFKEYVEDCKQVG--FDTIELNVGSLEI-------PEETLLRYVRLVKSAGLKA----KPKFAVMFNKSDIPSDRDRAFG 168 (289)
Q Consensus 102 ~~~~yl~~~k~lG--F~~IEISdGti~i-------~~~~r~~lI~~~~~~G~~v----~~E~g~k~~~~evg~~~d~~~~ 168 (289)
..++|.+.+++++ +|++|++=++-.. ..+.-.++++.+++. ... +| +.+|-.
T Consensus 155 ~~~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~-~~~~~~~~P-V~vKls------------- 219 (344)
T PRK05286 155 AVDDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEA-QAELHGYVP-LLVKIA------------- 219 (344)
T ss_pred CHHHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHH-HhccccCCc-eEEEeC-------------
Confidence 6788888888888 9999998655433 344555777777763 110 23 445432
Q ss_pred cccccCCCCccccccHHHHHHHHHHHHHccCcEEEEecc
Q 022982 169 AYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
|. + +.+++.+.++...++|||.|++=.+
T Consensus 220 ----p~-~------~~~~~~~ia~~l~~~Gadgi~~~nt 247 (344)
T PRK05286 220 ----PD-L------SDEELDDIADLALEHGIDGVIATNT 247 (344)
T ss_pred ----CC-C------CHHHHHHHHHHHHHhCCcEEEEeCC
Confidence 11 1 2556788889999999999999876
No 312
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=77.13 E-value=12 Score=39.99 Aligned_cols=24 Identities=33% Similarity=0.332 Sum_probs=20.5
Q ss_pred cHHHHHHHHHHHHHccCcEEEEec
Q 022982 183 DVDLLIRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAGA~~ViiEa 206 (289)
++++.++.++..-++|+|+|-|=+
T Consensus 636 ~~~~~~~~~~~l~~~g~d~i~vs~ 659 (765)
T PRK08255 636 TPDDAVEIARAFKAAGADLIDVSS 659 (765)
T ss_pred CHHHHHHHHHHHHhcCCcEEEeCC
Confidence 588889999988899999998843
No 313
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=77.08 E-value=20 Score=34.13 Aligned_cols=76 Identities=21% Similarity=0.343 Sum_probs=46.5
Q ss_pred HHHHHcCCCEEEecC----------CcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCC
Q 022982 108 EDCKQVGFDTIELNV----------GSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (289)
Q Consensus 108 ~~~k~lGF~~IEISd----------Gti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 177 (289)
+.+.+.|+|.|=|-| .|++++-|+.....+.+++ |.++.. .-.|=.|+.+-
T Consensus 30 ~~~d~agvD~iLVGDSlgmv~~G~~sT~~vtld~mi~h~~aV~R---------ga~~~~----vv~DmPf~sy~------ 90 (261)
T PF02548_consen 30 RIADEAGVDIILVGDSLGMVVLGYDSTLPVTLDEMIYHTKAVRR---------GAPNAF----VVADMPFGSYQ------ 90 (261)
T ss_dssp HHHHHTT-SEEEE-TTHHHHTT--SSSTT--HHHHHHHHHHHHH---------H-TSSE----EEEE--TTSST------
T ss_pred HHHHHcCCCEEEeCCcHHHheeCCCCCcCcCHHHHHHHHHHHHh---------cCCCce----EEecCCccccc------
Confidence 345566788877764 5889999998777776666 222111 01122232221
Q ss_pred ccccccHHHHHHHHHHHHH-ccCcEEEEec
Q 022982 178 TEYVEDVDLLIRRAERCLE-AGADMIMIDS 206 (289)
Q Consensus 178 ~~~~~~~~~~I~~~~~dLe-AGA~~ViiEa 206 (289)
.++++.++.+.+.+. +|||.|-+|+
T Consensus 91 ----~s~e~av~nA~rl~ke~GadaVKlEG 116 (261)
T PF02548_consen 91 ----ASPEQAVRNAGRLMKEAGADAVKLEG 116 (261)
T ss_dssp ----SSHHHHHHHHHHHHHTTT-SEEEEEB
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEecc
Confidence 259999999999999 9999999998
No 314
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=76.80 E-value=16 Score=33.36 Aligned_cols=118 Identities=16% Similarity=0.194 Sum_probs=71.2
Q ss_pred HHHHHHhCCc-eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeee
Q 022982 75 VVKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVM 153 (289)
Q Consensus 75 KI~l~~~~gV-~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k 153 (289)
.++...+++| .|.-+.=.|. ..+-.+.+.+-|+..+||.- ......+.|+++++. +.-.|++-+
T Consensus 6 ~~~~l~~~~vi~vir~~~~~~--------a~~~~~al~~~Gi~~iEit~-----~~~~a~~~i~~l~~~-~~~~p~~~v- 70 (213)
T PRK06552 6 ILTKLKANGVVAVVRGESKEE--------ALKISLAVIKGGIKAIEVTY-----TNPFASEVIKELVEL-YKDDPEVLI- 70 (213)
T ss_pred HHHHHHHCCEEEEEECCCHHH--------HHHHHHHHHHCCCCEEEEEC-----CCccHHHHHHHHHHH-cCCCCCeEE-
Confidence 3577788888 4545653343 34456788899999999865 446677899999873 111122222
Q ss_pred cCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEecc-----------ccccCCCCccHHHHH
Q 022982 154 FNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-----------DVCKHADSLRADIIA 222 (289)
Q Consensus 154 ~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-----------GI~d~~G~~r~d~v~ 222 (289)
+. |..++ .+++++.++|||++++-=+= ||--==|-....++.
T Consensus 71 -Ga-----------GTV~~---------------~~~~~~a~~aGA~FivsP~~~~~v~~~~~~~~i~~iPG~~T~~E~~ 123 (213)
T PRK06552 71 -GA-----------GTVLD---------------AVTARLAILAGAQFIVSPSFNRETAKICNLYQIPYLPGCMTVTEIV 123 (213)
T ss_pred -ee-----------eeCCC---------------HHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEECCcCCHHHHH
Confidence 11 12222 57889999999999994431 222122444555555
Q ss_pred HHHhccCCCceEE
Q 022982 223 KVIGRLGLEKTMF 235 (289)
Q Consensus 223 ~ii~~l~~eklif 235 (289)
+-. +.|.+-|-+
T Consensus 124 ~A~-~~Gad~vkl 135 (213)
T PRK06552 124 TAL-EAGSEIVKL 135 (213)
T ss_pred HHH-HcCCCEEEE
Confidence 554 366555555
No 315
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=76.79 E-value=50 Score=33.23 Aligned_cols=152 Identities=17% Similarity=0.149 Sum_probs=99.5
Q ss_pred HHHHHHHhhcccccEEEecC--------ccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHc
Q 022982 42 VLEDIFESMGQFVDGLKFSG--------GSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQV 113 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~--------GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~l 113 (289)
.++.+++.--+-|.++.=.| +++.-..-+...+-++.+++||+.+.. ..|.+..-+++.+-+.++.+.+.
T Consensus 81 ~~ea~~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~--~~Ed~~rt~~~~l~~~~~~~~~~ 158 (409)
T COG0119 81 DIEALLEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRF--SAEDATRTDPEFLAEVVKAAIEA 158 (409)
T ss_pred hHHHHHhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEE--EeeccccCCHHHHHHHHHHHHHc
Confidence 34555555555544443322 222222334566788999999976663 34555566667788888888899
Q ss_pred CCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHH
Q 022982 114 GFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAER 193 (289)
Q Consensus 114 GF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~ 193 (289)
|.+.|=+-|-.--..+.+-.++|+.+++.=-. ..-+++. |=.|....+-....
T Consensus 159 ga~~i~l~DTvG~~~P~~~~~~i~~l~~~v~~-~~~l~~H--------------------------~HnD~G~AvANsla 211 (409)
T COG0119 159 GADRINLPDTVGVATPNEVADIIEALKANVPN-KVILSVH--------------------------CHNDLGMAVANSLA 211 (409)
T ss_pred CCcEEEECCCcCccCHHHHHHHHHHHHHhCCC-CCeEEEE--------------------------ecCCcchHHHHHHH
Confidence 99999999999999999999999999984110 1222232 12234455788888
Q ss_pred HHHccCcEEEEeccccccCCCCccHHHHH
Q 022982 194 CLEAGADMIMIDSDDVCKHADSLRADIIA 222 (289)
Q Consensus 194 dLeAGA~~ViiEarGI~d~~G~~r~d~v~ 222 (289)
.++|||+.|=.=-.||=+..||.--..+.
T Consensus 212 Av~aGa~~v~~TvnGiGERaGna~l~~v~ 240 (409)
T COG0119 212 AVEAGADQVEGTVNGIGERAGNAALEEVV 240 (409)
T ss_pred HHHcCCcEEEEecccceeccccccHHHHH
Confidence 99999998744334776777775544443
No 316
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=76.77 E-value=22 Score=33.61 Aligned_cols=76 Identities=17% Similarity=0.278 Sum_probs=49.2
Q ss_pred CCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCC
Q 022982 99 GPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (289)
Q Consensus 99 g~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 177 (289)
+++...+.++.+++.|+++|+++-++.........+.|+.+++. + .| +.+|. + .
T Consensus 127 ~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~~---~p-vivK~----v-----------~------ 181 (299)
T cd02809 127 DREITEDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQWK---GP-LILKG----I-----------L------ 181 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhcC---CC-EEEee----c-----------C------
Confidence 34566777888899999999998876542111122456666663 2 12 33331 0 0
Q ss_pred ccccccHHHHHHHHHHHHHccCcEEEEeccc
Q 022982 178 TEYVEDVDLLIRRAERCLEAGADMIMIDSDD 208 (289)
Q Consensus 178 ~~~~~~~~~~I~~~~~dLeAGA~~ViiEarG 208 (289)
+ .+.+++..++||+.|++.++|
T Consensus 182 -----s----~~~a~~a~~~G~d~I~v~~~g 203 (299)
T cd02809 182 -----T----PEDALRAVDAGADGIVVSNHG 203 (299)
T ss_pred -----C----HHHHHHHHHCCCCEEEEcCCC
Confidence 1 466888889999999998874
No 317
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=76.60 E-value=10 Score=35.94 Aligned_cols=89 Identities=13% Similarity=0.184 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccccee
Q 022982 71 FIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 150 (289)
Q Consensus 71 ~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~ 150 (289)
.||+|+.- | .+..|+|.... + ....+.+...|||.|-|.-=--.++.++...+|+.++..|..++-
T Consensus 8 ~lk~~L~~----G-~~~~G~~~~~~---s----p~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lV-- 73 (267)
T PRK10128 8 PFKEGLRK----G-EVQIGLWLSST---T----SYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVI-- 73 (267)
T ss_pred HHHHHHHc----C-CceEEEEecCC---C----cHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEE--
Confidence 46666543 3 23446665221 1 345566678899999999999999999999999999987765432
Q ss_pred eeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEE
Q 022982 151 AVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 204 (289)
Q Consensus 151 g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~Vii 204 (289)
-+. ..| -..+++.||+||+=||+
T Consensus 74 Rvp--------~~~-----------------------~~~i~r~LD~GA~GIiv 96 (267)
T PRK10128 74 RPV--------EGS-----------------------KPLIKQVLDIGAQTLLI 96 (267)
T ss_pred ECC--------CCC-----------------------HHHHHHHhCCCCCeeEe
Confidence 221 111 25668899999999987
No 318
>PRK14057 epimerase; Provisional
Probab=76.59 E-value=15 Score=34.67 Aligned_cols=59 Identities=5% Similarity=0.032 Sum_probs=36.1
Q ss_pred eeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCC-------------ceecCCcHHH
Q 022982 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-------------VYVSTGDWAE 93 (289)
Q Consensus 27 T~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~g-------------V~v~~GtlfE 93 (289)
+..+|-+|=+....++++.+.+.-++||-+- +-. ...+.+-++..|++| |-+.|+|-+|
T Consensus 75 ~~p~DvHLMV~~P~~~i~~~~~aGad~It~H-------~Ea-~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e 146 (254)
T PRK14057 75 TFIKDVHLMVADQWTAAQACVKAGAHCITLQ-------AEG-DIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLD 146 (254)
T ss_pred CCCeeEEeeeCCHHHHHHHHHHhCCCEEEEe-------ecc-ccCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHH
Confidence 4556777655535557777777766666432 110 124777788888765 4567888665
No 319
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=76.59 E-value=41 Score=32.29 Aligned_cols=195 Identities=13% Similarity=0.169 Sum_probs=114.0
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceec----CCc--H---HH----HHH--HhCCc-----
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS----TGD--W---AE----HLI--RNGPS----- 101 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~----~Gt--l---fE----~a~--~qg~~----- 101 (289)
.++++|..|=+- +++-|.+-+++-+.++.-|+-|.+.+.++- +|+ + ++ .+. ++..+
T Consensus 5 ~~k~lL~~A~~~----~yAV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vPV 80 (286)
T PRK08610 5 SMKEMLIDAKEN----GYAVGQYNLNNLEFTQAILEASQEENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLNITIPV 80 (286)
T ss_pred cHHHHHHHHHHC----CceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCCE
Confidence 455666555332 457777788888888888888888776542 221 1 12 111 11100
Q ss_pred -------hHHHHHHHHHHcCCCEEEecCCcccCChhH--HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccc
Q 022982 102 -------AFKEYVEDCKQVGFDTIELNVGSLEIPEET--LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVA 172 (289)
Q Consensus 102 -------~~~~yl~~~k~lGF~~IEISdGti~i~~~~--r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~ 172 (289)
.=-+.+..|-++||+.|=+..-.+++.+-- =.++++.++..|.-|--|+|.=- ..+|.....
T Consensus 81 ~lHLDHg~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vg------g~ed~~~~~--- 151 (286)
T PRK08610 81 AIHLDHGSSFEKCKEAIDAGFTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVG------GQEDDVVAD--- 151 (286)
T ss_pred EEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccC------CccCCCCCc---
Confidence 013556778899999999976654443322 23678888889999999999831 122210000
Q ss_pred cCCCCccccccHHHHHHHHHHHHHccCcEEEEec---cccccCCCCccHHHHHHHHhccCCCceEEecC-Cc-hhHHHHH
Q 022982 173 RAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS---DDVCKHADSLRADIIAKVIGRLGLEKTMFEAT-NP-RTSEWFI 247 (289)
Q Consensus 173 ~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEa---rGI~d~~G~~r~d~v~~ii~~l~~eklifEAP-~k-~qQ~~~I 247 (289)
. +..+ ||++..+.++ +-|+|.+-+== -|+|...-+++-+.+++|-+.+++-=++==+. .+ +|....|
T Consensus 152 ~----~~yT-~peea~~Fv~---~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai 223 (286)
T PRK08610 152 G----IIYA-DPKECQELVE---KTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTGLPLVLHGGTGIPTKDIQKAI 223 (286)
T ss_pred c----cccC-CHHHHHHHHH---HHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHH
Confidence 0 0012 5666555554 35888765543 39999888999999999988776422222221 33 3333344
Q ss_pred HHhCCCcccc
Q 022982 248 RRYGPKVNLF 257 (289)
Q Consensus 248 ~~fG~~VNLg 257 (289)
+.==..||.+
T Consensus 224 ~~GI~KiNi~ 233 (286)
T PRK08610 224 PFGTAKINVN 233 (286)
T ss_pred HCCCeEEEec
Confidence 4433567765
No 320
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=76.05 E-value=22 Score=35.31 Aligned_cols=71 Identities=10% Similarity=0.127 Sum_probs=46.2
Q ss_pred ChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccC----ChhHHHHHHHHHHHcC
Q 022982 68 PKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEI----PEETLLRYVRLVKSAG 143 (289)
Q Consensus 68 p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i----~~~~r~~lI~~~~~~G 143 (289)
.++.+.+.|+-.++.+|.+..-. +|....++.+.+.+.|.+.|-|..-+.+- +..++..+.+..++.+
T Consensus 117 ~p~l~~~ii~~vr~a~VtvkiRl--------~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~ 188 (369)
T TIGR01304 117 KPELLGERIAEVRDSGVITAVRV--------SPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELD 188 (369)
T ss_pred ChHHHHHHHHHHHhcceEEEEec--------CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCC
Confidence 45666777777777765544321 34478899999999999999997544321 1234666666666655
Q ss_pred Ccc
Q 022982 144 LKA 146 (289)
Q Consensus 144 ~~v 146 (289)
..|
T Consensus 189 IPV 191 (369)
T TIGR01304 189 VPV 191 (369)
T ss_pred CCE
Confidence 443
No 321
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=75.92 E-value=64 Score=29.54 Aligned_cols=176 Identities=14% Similarity=0.117 Sum_probs=100.6
Q ss_pred chhHHHHHHHhhcccccEEEecCcccccc-ChhHHHHHHHHHHhCC-------------ceecCCcHHHHHHHhCCchHH
Q 022982 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLM-PKPFIEEVVKRAHQHD-------------VYVSTGDWAEHLIRNGPSAFK 104 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GTs~l~-p~~~l~eKI~l~~~~g-------------V~v~~GtlfE~a~~qg~~~~~ 104 (289)
++..+.++++..-+-+|.+=+|.=++-.. +-..+++.-+.+.++| +++..=+.+-. + +. ..+
T Consensus 16 ~~~~~~~~~~~l~~~ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~-~-~~--~~~ 91 (244)
T PRK13125 16 NVESFKEFIIGLVELVDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLED-Y-VD--SLD 91 (244)
T ss_pred CHHHHHHHHHHHHhhCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecch-h-hh--CHH
Confidence 44555556554433399999998555442 2334454444443333 32210011111 1 22 588
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccH
Q 022982 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184 (289)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~ 184 (289)
+|++.|++.|.+.|=|=|=.++- .++-.++++.++++|+++..++.... +
T Consensus 92 ~~i~~~~~~Gadgvii~dlp~e~-~~~~~~~~~~~~~~Gl~~~~~v~p~T-----------------------------~ 141 (244)
T PRK13125 92 NFLNMARDVGADGVLFPDLLIDY-PDDLEKYVEIIKNKGLKPVFFTSPKF-----------------------------P 141 (244)
T ss_pred HHHHHHHHcCCCEEEECCCCCCc-HHHHHHHHHHHHHcCCCEEEEECCCC-----------------------------C
Confidence 99999999999999884433221 35667899999999999887776521 1
Q ss_pred HHHHHHHHHHHHccCcEEEEecc-ccccCCCCccHHHHHHHH---hccCCCceEEecCC-chhHHHHHHHhCCCc
Q 022982 185 DLLIRRAERCLEAGADMIMIDSD-DVCKHADSLRADIIAKVI---GRLGLEKTMFEATN-PRTSEWFIRRYGPKV 254 (289)
Q Consensus 185 ~~~I~~~~~dLeAGA~~ViiEar-GI~d~~G~~r~d~v~~ii---~~l~~eklifEAP~-k~qQ~~~I~~fG~~V 254 (289)
+++++.-++.....+++ +. +.+.. .+.+++.+.+- +..+-..|+.+.=- ...+...+...|.|.
T Consensus 142 ---~e~l~~~~~~~~~~l~m-sv~~~~g~--~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~~gaD~ 210 (244)
T PRK13125 142 ---DLLIHRLSKLSPLFIYY-GLRPATGV--PLPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALSAGADG 210 (244)
T ss_pred ---HHHHHHHHHhCCCEEEE-EeCCCCCC--CchHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHHcCCCE
Confidence 34555556666666655 43 34422 45555444332 22221235666655 456777777777663
No 322
>PRK12677 xylose isomerase; Provisional
Probab=75.60 E-value=13 Score=36.88 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc---cCChhH----HHHHHHHHHHcCCccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSL---EIPEET----LLRYVRLVKSAGLKAK 147 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti---~i~~~~----r~~lI~~~~~~G~~v~ 147 (289)
...+.++.++++||++||+.+..+ ..+..+ ..++-+.+++.|++|.
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~ 84 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDETGLVVP 84 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHHcCCeeE
Confidence 588889999999999999986543 223332 4566777788899854
No 323
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=75.37 E-value=40 Score=32.24 Aligned_cols=152 Identities=14% Similarity=0.199 Sum_probs=88.1
Q ss_pred ecCccccccChhHHHHHHHHHHhCCceecC----Cc--HH--HHHHH------------------hCCchHHHHHHHHHH
Q 022982 59 FSGGSHSLMPKPFIEEVVKRAHQHDVYVST----GD--WA--EHLIR------------------NGPSAFKEYVEDCKQ 112 (289)
Q Consensus 59 fg~GTs~l~p~~~l~eKI~l~~~~gV~v~~----Gt--lf--E~a~~------------------qg~~~~~~yl~~~k~ 112 (289)
++-|.+-+++-+.++.-|+-|.+.+.++-. ++ ++ +.+.. ++ .--+.+..|-+
T Consensus 17 yAV~AfN~~n~e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~~vPValHLDH~--~~~e~i~~ai~ 94 (287)
T PF01116_consen 17 YAVPAFNVYNLETARAVIEAAEELNSPVILQISPSEVKYMGLEYLAAMVKAAAEEASVPVALHLDHG--KDFEDIKRAID 94 (287)
T ss_dssp -BEEEEE-SSHHHHHHHHHHHHHTTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHHSTSEEEEEEEEE---SHHHHHHHHH
T ss_pred CeEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcchhhhhhhhHHHHHHHHHHHHHHcCCCEEeecccC--CCHHHHHHHHH
Confidence 455556666666666666666666664432 11 11 22111 11 22456777888
Q ss_pred cCCCEEEecCCcccCChhHH----HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHH
Q 022982 113 VGFDTIELNVGSLEIPEETL----LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 188 (289)
Q Consensus 113 lGF~~IEISdGti~i~~~~r----~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I 188 (289)
.||+.|=+..-. +|.++= +++++.++..|.-|--|+|.=-+ .+|.. ..+.. ......||++..
T Consensus 95 ~GftSVM~DgS~--l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g------~ed~~----~~~~~-~~~~~TdP~~a~ 161 (287)
T PF01116_consen 95 AGFTSVMIDGSA--LPFEENIAITREVVEYAHAYGVSVEAELGHIGG------KEDGI----ESEEE-TESLYTDPEEAK 161 (287)
T ss_dssp HTSSEEEEE-TT--S-HHHHHHHHHHHHHHHHHTT-EEEEEESBSSS------SCTTC----SSSTT--TTCSSSHHHHH
T ss_pred hCcccccccCCc--CCHHHHHHHHHHHHHhhhhhCCEEEEEeeeeec------cCCCc----ccccc-ccccccCHHHHH
Confidence 899999886554 444432 46788888999999999998321 21210 00000 011223788877
Q ss_pred HHHHHHHHccCcEEEEecc---ccccC--CCCccHHHHHHHHhcc
Q 022982 189 RRAERCLEAGADMIMIDSD---DVCKH--ADSLRADIIAKVIGRL 228 (289)
Q Consensus 189 ~~~~~dLeAGA~~ViiEar---GI~d~--~G~~r~d~v~~ii~~l 228 (289)
+.++ +-|+|.+=+==- |.|.. .-+++-+.+++|-+.+
T Consensus 162 ~Fv~---~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~ 203 (287)
T PF01116_consen 162 EFVE---ETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAV 203 (287)
T ss_dssp HHHH---HHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHH
T ss_pred HHHH---HhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhc
Confidence 7777 569998655432 89999 7789999999999887
No 324
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=75.21 E-value=22 Score=34.29 Aligned_cols=82 Identities=15% Similarity=0.123 Sum_probs=57.6
Q ss_pred EEecCccccccChhHHHHHHHHHHhC-CceecC--C-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-------
Q 022982 57 LKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVST--G-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL------- 125 (289)
Q Consensus 57 lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~~--G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti------- 125 (289)
.|=|+|++.+..++.+.+.++-.+++ +++|+- - +|-... .. ....++.+.+.+.|.++|.|.-.|.
T Consensus 96 ~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~-~~--~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg 172 (318)
T TIGR00742 96 QNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLD-SY--EFLCDFVEIVSGKGCQNFIVHARKAWLSGLSP 172 (318)
T ss_pred CCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcc-hH--HHHHHHHHHHHHcCCCEEEEeCCchhhcCCCc
Confidence 56688999999999999999999875 665553 1 332111 11 1456788899999999999999984
Q ss_pred ----cCChhHHHHHHHHHHHc
Q 022982 126 ----EIPEETLLRYVRLVKSA 142 (289)
Q Consensus 126 ----~i~~~~r~~lI~~~~~~ 142 (289)
.+++-++ +.|+++++.
T Consensus 173 ~~~~~~~~~~~-~~i~~vk~~ 192 (318)
T TIGR00742 173 KENREIPPLRY-ERVYQLKKD 192 (318)
T ss_pred cccccCCchhH-HHHHHHHHh
Confidence 1333344 678888773
No 325
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=75.19 E-value=22 Score=34.07 Aligned_cols=81 Identities=30% Similarity=0.393 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHcC--CCEEEecCCcccCC-------hhHHHHHHHHHHHc-C-C-cccceeeeecCCCCCCCcccccccc
Q 022982 102 AFKEYVEDCKQVG--FDTIELNVGSLEIP-------EETLLRYVRLVKSA-G-L-KAKPKFAVMFNKSDIPSDRDRAFGA 169 (289)
Q Consensus 102 ~~~~yl~~~k~lG--F~~IEISdGti~i~-------~~~r~~lI~~~~~~-G-~-~v~~E~g~k~~~~evg~~~d~~~~~ 169 (289)
..++|.+.+++++ .|+||++=++-..+ .+.-.++++.+++. . + +-+| +.+|-.
T Consensus 146 ~~~d~~~~~~~~~~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~P-v~vKl~-------------- 210 (327)
T cd04738 146 AVEDYVIGVRKLGPYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVP-LLVKIA-------------- 210 (327)
T ss_pred cHHHHHHHHHHHHhhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCC-eEEEeC--------------
Confidence 5788888888877 99999987655432 34555777777763 0 0 0122 444431
Q ss_pred ccccCCCCccccccHHHHHHHHHHHHHccCcEEEEecc
Q 022982 170 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
|. + +.++..+.++...++||+.|.+=.+
T Consensus 211 ---~~-~------~~~~~~~ia~~l~~aGad~I~~~n~ 238 (327)
T cd04738 211 ---PD-L------SDEELEDIADVALEHGVDGIIATNT 238 (327)
T ss_pred ---CC-C------CHHHHHHHHHHHHHcCCcEEEEECC
Confidence 11 1 2456778888888999999987765
No 326
>PRK06256 biotin synthase; Validated
Probab=75.09 E-value=33 Score=32.52 Aligned_cols=70 Identities=17% Similarity=0.184 Sum_probs=44.2
Q ss_pred HHHHHHHHHhCCceecC-C--cHHHHHHHh--CCchHHHH---HHHHHHcCCCEEEecCCcc---cCChhHHHHHHHHHH
Q 022982 72 IEEVVKRAHQHDVYVST-G--DWAEHLIRN--GPSAFKEY---VEDCKQVGFDTIELNVGSL---EIPEETLLRYVRLVK 140 (289)
Q Consensus 72 l~eKI~l~~~~gV~v~~-G--tlfE~a~~q--g~~~~~~y---l~~~k~lGF~~IEISdGti---~i~~~~r~~lI~~~~ 140 (289)
-++.++.++++|+..+. | | -+..+.+ ....++++ ++.+++.|+ +++.|.+ .-+.+++.+.++.++
T Consensus 151 ~~e~l~~LkeaG~~~v~~~lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi---~v~~~~I~GlgEt~ed~~~~~~~l~ 226 (336)
T PRK06256 151 TEEQAERLKEAGVDRYNHNLET-SRSYFPNVVTTHTYEDRIDTCEMVKAAGI---EPCSGGIIGMGESLEDRVEHAFFLK 226 (336)
T ss_pred CHHHHHHHHHhCCCEEecCCcc-CHHHHhhcCCCCCHHHHHHHHHHHHHcCC---eeccCeEEeCCCCHHHHHHHHHHHH
Confidence 34667789999985544 3 4 3333321 12356655 456667786 4666655 356788999999999
Q ss_pred HcCCc
Q 022982 141 SAGLK 145 (289)
Q Consensus 141 ~~G~~ 145 (289)
+.+..
T Consensus 227 ~l~~~ 231 (336)
T PRK06256 227 ELDAD 231 (336)
T ss_pred hCCCC
Confidence 87765
No 327
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=75.05 E-value=18 Score=32.92 Aligned_cols=96 Identities=20% Similarity=0.294 Sum_probs=57.6
Q ss_pred ccChhHHHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcC
Q 022982 66 LMPKPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAG 143 (289)
Q Consensus 66 l~p~~~l~eKI~l~~~~gV~v~~G--tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G 143 (289)
++.+..-.+.++.|+++||.+.|| |.-|+.- +.+.|.|+|=+--.. .+. ..+|+.++.
T Consensus 92 ivsP~~~~~v~~~~~~~~i~~iPG~~T~~E~~~-------------A~~~Gad~vklFPa~-~~G----~~~ik~l~~-- 151 (213)
T PRK06552 92 IVSPSFNRETAKICNLYQIPYLPGCMTVTEIVT-------------ALEAGSEIVKLFPGS-TLG----PSFIKAIKG-- 151 (213)
T ss_pred EECCCCCHHHHHHHHHcCCCEECCcCCHHHHHH-------------HHHcCCCEEEECCcc-cCC----HHHHHHHhh--
Confidence 344456678888899999999998 4555542 246899999983211 122 345666655
Q ss_pred CcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccC
Q 022982 144 LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKH 212 (289)
Q Consensus 144 ~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~ 212 (289)
+.|++-. ..+| + ++ .+.+...+++||+-|-+=+. |+..
T Consensus 152 --~~p~ip~----~atG--G-------I~---------------~~N~~~~l~aGa~~vavgs~-l~~~ 189 (213)
T PRK06552 152 --PLPQVNV----MVTG--G-------VN---------------LDNVKDWFAAGADAVGIGGE-LNKL 189 (213)
T ss_pred --hCCCCEE----EEEC--C-------CC---------------HHHHHHHHHCCCcEEEEchH-HhCc
Confidence 2232221 1111 0 11 58888999999998877543 4433
No 328
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=74.89 E-value=23 Score=32.29 Aligned_cols=77 Identities=14% Similarity=0.160 Sum_probs=52.6
Q ss_pred CCchHHHHHHHHHHcCCCE--EEecCCcc--cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccC
Q 022982 99 GPSAFKEYVEDCKQVGFDT--IELNVGSL--EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (289)
Q Consensus 99 g~~~~~~yl~~~k~lGF~~--IEISdGti--~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 174 (289)
++.++.+.++.+++.|++. +-|-||.. .++.. .+.|+.+++.++.+.-++..+
T Consensus 17 d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G--~~~v~~lr~~~~~~~lDvHLm--------------------- 73 (228)
T PTZ00170 17 DFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFG--PPVVKSLRKHLPNTFLDCHLM--------------------- 73 (228)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCccCCCcCcC--HHHHHHHHhcCCCCCEEEEEC---------------------
Confidence 3447889999999999776 67788887 33333 468888888765544344442
Q ss_pred CCCccccccHHHHHHHHHHHHHccCcEEEEecc
Q 022982 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 175 ~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
+.+|...+ +...++|||+|.+=++
T Consensus 74 ------~~~p~~~i---~~~~~~Gad~itvH~e 97 (228)
T PTZ00170 74 ------VSNPEKWV---DDFAKAGASQFTFHIE 97 (228)
T ss_pred ------CCCHHHHH---HHHHHcCCCEEEEecc
Confidence 11344444 6677899999999766
No 329
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=74.83 E-value=9.4 Score=43.07 Aligned_cols=81 Identities=7% Similarity=0.131 Sum_probs=55.7
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 022982 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (289)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 182 (289)
+-++.+.+.+.|.+.|=|.|-.--+.+..-.++|+.++++ +. ..+++.+ ...
T Consensus 691 ~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~-~~--~pi~~H~-Hdt------------------------ 742 (1143)
T TIGR01235 691 YTNLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKALREK-TD--LPIHFHT-HDT------------------------ 742 (1143)
T ss_pred HHHHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHHHHh-cC--CeEEEEE-CCC------------------------
Confidence 3355566688999999999999999999999999999985 21 2344432 111
Q ss_pred cHHHHHHHHHHHHHccCcEEEEeccccccC
Q 022982 183 DVDLLIRRAERCLEAGADMIMIDSDDVCKH 212 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAGA~~ViiEarGI~d~ 212 (289)
...-+-..-..++|||+.|=.=-.|+-..
T Consensus 743 -~Gla~an~laA~eaGad~vD~ai~gl~G~ 771 (1143)
T TIGR01235 743 -SGIAVASMLAAVEAGVDVVDVAVDSMSGL 771 (1143)
T ss_pred -CCcHHHHHHHHHHhCCCEEEecchhhcCC
Confidence 22235667778999999854433466333
No 330
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=74.75 E-value=57 Score=30.02 Aligned_cols=146 Identities=14% Similarity=0.257 Sum_probs=0.0
Q ss_pred CCCCceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccCh--hHHHHHHHHHHhCCc----eecCCcHHHHH
Q 022982 22 RRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPK--PFIEEVVKRAHQHDV----YVSTGDWAEHL 95 (289)
Q Consensus 22 R~~GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~--~~l~eKI~l~~~~gV----~v~~GtlfE~a 95 (289)
|...-++.+|-+|=+....++++.+.+.-+++| .++.| ..+.+-++..|++|+ -+.|+|-+|
T Consensus 57 r~~~~~~~~dvHLMv~~P~~~i~~~~~~gad~I----------~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~-- 124 (223)
T PRK08745 57 RKHGITAPIDVHLMVEPVDRIVPDFADAGATTI----------SFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVD-- 124 (223)
T ss_pred HhhCCCCCEEEEeccCCHHHHHHHHHHhCCCEE----------EEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHH--
Q ss_pred HHhCCchHHHHHHHHH-------HcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccc
Q 022982 96 IRNGPSAFKEYVEDCK-------QVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFG 168 (289)
Q Consensus 96 ~~qg~~~~~~yl~~~k-------~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~ 168 (289)
.+..|+..+. +-||. .-.+++-..+.-.++-+...++++. ..+.+ ...|.
T Consensus 125 ------~i~~~l~~vD~VlvMtV~PGf~----GQ~fi~~~l~KI~~l~~~~~~~~~~--~~IeV---DGGI~-------- 181 (223)
T PRK08745 125 ------ILDWVLPELDLVLVMSVNPGFG----GQAFIPSALDKLRAIRKKIDALGKP--IRLEI---DGGVK-------- 181 (223)
T ss_pred ------HHHHHHhhcCEEEEEEECCCCC----CccccHHHHHHHHHHHHHHHhcCCC--eeEEE---ECCCC--------
Q ss_pred cccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHH
Q 022982 169 AYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKV 224 (289)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~i 224 (289)
.+.++...+||||.+++ |+.||.++. ..+.++++
T Consensus 182 -------------------~eti~~l~~aGaDi~V~-GSaiF~~~d--~~~~~~~l 215 (223)
T PRK08745 182 -------------------ADNIGAIAAAGADTFVA-GSAIFNAPD--YAQVIAQM 215 (223)
T ss_pred -------------------HHHHHHHHHcCCCEEEE-ChhhhCCCC--HHHHHHHH
No 331
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=74.74 E-value=11 Score=33.52 Aligned_cols=140 Identities=16% Similarity=0.269 Sum_probs=81.8
Q ss_pred CceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecC----C-----cHHHHH
Q 022982 25 GVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST----G-----DWAEHL 95 (289)
Q Consensus 25 GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~----G-----tlfE~a 95 (289)
++..+.+=|. . .+...+.+++.. .|. .-.|++.+.+++.+++..+-+.+..|.++. | +|.+
T Consensus 73 ~~pv~~~GgI--~-~~e~~~~~~~~G---ad~--vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~-- 142 (234)
T cd04732 73 GIPVQVGGGI--R-SLEDIERLLDLG---VSR--VIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLE-- 142 (234)
T ss_pred CCCEEEeCCc--C-CHHHHHHHHHcC---CCE--EEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCee--
Confidence 4555665554 3 667788888743 443 367888888888887777765442332221 1 2321
Q ss_pred HHhCCchHHHHHHHHHHcCCCEEEec----CCcccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccc
Q 022982 96 IRNGPSAFKEYVEDCKQVGFDTIELN----VGSLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAY 170 (289)
Q Consensus 96 ~~qg~~~~~~yl~~~k~lGF~~IEIS----dGti~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~ 170 (289)
..+....++.+.+.+.|++.+=+. +|+..=++ .++|+++++. ...+....|+
T Consensus 143 --~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g~~---~~~i~~i~~~~~ipvi~~GGi------------------ 199 (234)
T cd04732 143 --TSEVSLEELAKRFEELGVKAIIYTDISRDGTLSGPN---FELYKELAAATGIPVIASGGV------------------ 199 (234)
T ss_pred --ecCCCHHHHHHHHHHcCCCEEEEEeecCCCccCCCC---HHHHHHHHHhcCCCEEEecCC------------------
Confidence 112356788888999999988665 33332222 4677777763 2222222222
Q ss_pred cccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCC
Q 022982 171 VARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHA 213 (289)
Q Consensus 171 ~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~ 213 (289)
.++ +.+++.++.||+.||+ ++.++.+.
T Consensus 200 -----------~~~----~di~~~~~~Ga~gv~v-g~~~~~~~ 226 (234)
T cd04732 200 -----------SSL----DDIKALKELGVAGVIV-GKALYEGK 226 (234)
T ss_pred -----------CCH----HHHHHHHHCCCCEEEE-eHHHHcCC
Confidence 123 3344556679999999 66666553
No 332
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=74.73 E-value=8.4 Score=35.67 Aligned_cols=71 Identities=18% Similarity=0.239 Sum_probs=39.4
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 022982 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (289)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 182 (289)
++.-+..++++|-+.|-.=.=--.=..++...+-+.+.++||..-|-=|+
T Consensus 137 vetAiaml~dmG~~SiKffPm~Gl~~leE~~avAkA~a~~g~~lEPTGGI------------------------------ 186 (218)
T PF07071_consen 137 VETAIAMLKDMGGSSIKFFPMGGLKHLEELKAVAKACARNGFTLEPTGGI------------------------------ 186 (218)
T ss_dssp HHHHHHHHHHTT--EEEE---TTTTTHHHHHHHHHHHHHCT-EEEEBSS-------------------------------
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceeCCcCCc------------------------------
Confidence 67788888888888777532221223556666667777778776443333
Q ss_pred cHHHHHHHHHHHHHccCcEEE
Q 022982 183 DVDLLIRRAERCLEAGADMIM 203 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAGA~~Vi 203 (289)
|.+.+-+..+-+|+||+.+||
T Consensus 187 dl~N~~~I~~i~l~aGv~~vi 207 (218)
T PF07071_consen 187 DLDNFEEIVKICLDAGVEKVI 207 (218)
T ss_dssp -TTTHHHHHHHHHHTT-S-B-
T ss_pred CHHHHHHHHHHHHHcCCCeec
Confidence 233345666778899998887
No 333
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=74.55 E-value=13 Score=33.44 Aligned_cols=93 Identities=13% Similarity=0.117 Sum_probs=56.1
Q ss_pred chhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCCc-HHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022982 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGD-WAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~Gt-lfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (289)
.+....++++..++|+|++|+|+--..-+.. +-++.+++.+..+.--- +..+ |+.+..|.+.+.++|.|+
T Consensus 9 ~~~~a~~~~~~~~~~v~~iKig~~l~~~~G~----~~v~~l~~~~~~v~lD~K~~Di-----g~t~~~~~~~~~~~gad~ 79 (213)
T TIGR01740 9 TKDEALDLADSLGPEIEVIKVGIDLLLDGGD----KIIDELAKLNKLIFLDLKFADI-----PNTVKLQYESKIKQGADM 79 (213)
T ss_pred CHHHHHHHHHhcCCcCcEEEECHHHHHhcCH----HHHHHHHHcCCCEEEEEeecch-----HHHHHHHHHHHHhcCCCE
Confidence 4567788999999999999999865554443 34444555554332110 1111 124555666666778888
Q ss_pred EEecCCcccCChhHHHHHHHHHHHcC
Q 022982 118 IELNVGSLEIPEETLLRYVRLVKSAG 143 (289)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~G 143 (289)
|-|+- ..+.+.-..+++.+++.|
T Consensus 80 vTvh~---~~g~~~l~~~~~~~~~~~ 102 (213)
T TIGR01740 80 VNVHG---VAGSESVEAAKEAASEGG 102 (213)
T ss_pred EEEcC---CCCHHHHHHHHHHhhcCC
Confidence 87774 334455556666666554
No 334
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=74.52 E-value=14 Score=37.54 Aligned_cols=93 Identities=16% Similarity=0.205 Sum_probs=68.5
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHH
Q 022982 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (289)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (289)
+.+++.+|=|+|=+-...++ +++..++++.+++.||.++-|++-
T Consensus 125 I~ea~~~GADavLLI~~~L~--~~~l~~l~~~a~~lGl~~lvEvh~---------------------------------- 168 (454)
T PRK09427 125 IYLARYYGADAILLMLSVLD--DEQYRQLAAVAHSLNMGVLTEVSN---------------------------------- 168 (454)
T ss_pred HHHHHHcCCCchhHHHHhCC--HHHHHHHHHHHHHcCCcEEEEECC----------------------------------
Confidence 67889999999987766654 678889999999999999998875
Q ss_pred HHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCce-EEecC
Q 022982 187 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKT-MFEAT 238 (289)
Q Consensus 187 ~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~ekl-ifEAP 238 (289)
.+++++.+++||..|-|..|.+-.- ++..+.-.+++..+|.+.+ +-|.=
T Consensus 169 -~~El~~al~~~a~iiGiNnRdL~t~--~vd~~~~~~l~~~ip~~~~~vseSG 218 (454)
T PRK09427 169 -EEELERAIALGAKVIGINNRNLRDL--SIDLNRTRELAPLIPADVIVISESG 218 (454)
T ss_pred -HHHHHHHHhCCCCEEEEeCCCCccc--eECHHHHHHHHhhCCCCcEEEEeCC
Confidence 3566778999999999999865332 2334555666666664444 44443
No 335
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=74.15 E-value=18 Score=35.78 Aligned_cols=74 Identities=27% Similarity=0.345 Sum_probs=51.0
Q ss_pred chHHHHHHHHHHcCCCEEEecCCccc------------CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccc
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVGSLE------------IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFG 168 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~------------i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~ 168 (289)
+.+.+|.+.+++.|+|+||++=++-. -.++.-.++++.+++. .-+| +.+|-..
T Consensus 113 ~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~--~~~P-v~vKl~p------------ 177 (420)
T PRK08318 113 EEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRG--SRLP-VIVKLTP------------ 177 (420)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhc--cCCc-EEEEcCC------------
Confidence 35778888889999999999977643 2456667888888775 1234 5555321
Q ss_pred cccccCCCCccccccHHHHHHHHHHHHHccCcEEE
Q 022982 169 AYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIM 203 (289)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~Vi 203 (289)
+...+.+.++...++||+-|+
T Consensus 178 --------------~~~~~~~~a~~~~~~Gadgi~ 198 (420)
T PRK08318 178 --------------NITDIREPARAAKRGGADAVS 198 (420)
T ss_pred --------------CcccHHHHHHHHHHCCCCEEE
Confidence 122245666777899999998
No 336
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=74.15 E-value=42 Score=30.66 Aligned_cols=170 Identities=16% Similarity=0.200 Sum_probs=99.2
Q ss_pred CCCCceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccC----hhHHHHHHHH--HHhCCceecC--C-cHH
Q 022982 22 RRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMP----KPFIEEVVKR--AHQHDVYVST--G-DWA 92 (289)
Q Consensus 22 R~~GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p----~~~l~eKI~l--~~~~gV~v~~--G-tlf 92 (289)
+..|++-++..+. .+..++..++.+..|=+.+..++|-+.-+- ++.+++.-++ +++..+.--+ | .+.
T Consensus 24 ~~~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~l~~~~~~~~~aIGEiGLD~~ 99 (255)
T PF01026_consen 24 REAGVSAIIIVST----DPEDWERVLELASQYPDRVYPALGIHPWEAHEVNEEDLEELEELINLNRPKVVAIGEIGLDYY 99 (255)
T ss_dssp HHTTEEEEEEEES----SHHHHHHHHHHHHHTTTEEEEEE---GGGGGGHSHHHHHHHHHHHHHTSTTEEEEEEEEEETT
T ss_pred HHcCCCEEEEcCC----CHHHhHHHHHHHhcCCCeEEEEecCCcchhhhhhHHHHHHHHHHHHhccccceeeeeeccCcc
Confidence 4568998988888 556888999999999999999999776443 2223333333 3444432111 3 231
Q ss_pred H-----HHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccc
Q 022982 93 E-----HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAF 167 (289)
Q Consensus 93 E-----~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~ 167 (289)
. ...+.. -|.+.++.|++++...+==+-+ .-.++++.+++.+.. .. -++-...+ ++
T Consensus 100 ~~~~~~~~~Q~~--vF~~ql~lA~~~~~pv~iH~r~-------a~~~~l~il~~~~~~-~~-~~i~H~f~-----g~--- 160 (255)
T PF01026_consen 100 WRNEEDKEVQEE--VFERQLELAKELNLPVSIHCRK-------AHEELLEILKEYGPP-NL-RVIFHCFS-----GS--- 160 (255)
T ss_dssp TTSSSGHHHHHH--HHHHHHHHHHHHTCEEEEEEES-------HHHHHHHHHHHTTGG-TS-EEEETT-------S----
T ss_pred cccCCcHHHHHH--HHHHHHHHHHHhCCcEEEecCC-------cHHHHHHHHHhcccc-ce-eEEEecCC-----CC---
Confidence 1 123333 7999999999999987744444 223677777776521 11 33322211 11
Q ss_pred ccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecCCc
Q 022982 168 GAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNP 240 (289)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklifEAP~k 240 (289)
.+++++.++.|.+.=+--. ++..+ .+...++++.+|+++|+.|...|
T Consensus 161 --------------------~~~~~~~~~~g~~~S~~~~--~~~~~----~~~~~~~~~~ip~drillETD~P 207 (255)
T PF01026_consen 161 --------------------PEEAKKFLDLGCYFSFSGA--ITFKN----SKKVRELIKAIPLDRILLETDAP 207 (255)
T ss_dssp --------------------HHHHHHHHHTTEEEEEEGG--GGSTT----SHHHHHHHHHS-GGGEEEE-BTT
T ss_pred --------------------HHHHHHHHhcCceEEeccc--ccccc----cHHHHHHHhcCChhhEEEcCCCC
Confidence 4666777777665433211 22222 34477788999999999998754
No 337
>PLN02389 biotin synthase
Probab=73.68 E-value=71 Score=31.69 Aligned_cols=70 Identities=21% Similarity=0.194 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc---------cCChhHHHHHHHHHH
Q 022982 70 PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL---------EIPEETLLRYVRLVK 140 (289)
Q Consensus 70 ~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti---------~i~~~~r~~lI~~~~ 140 (289)
+.+.+.++.+++.++.++ ..-| -.-++-++..|+.|++.+-++--|. .-+-++|++.|+.++
T Consensus 153 e~i~eiir~ik~~~l~i~--------~s~G-~l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~ 223 (379)
T PLN02389 153 NQILEYVKEIRGMGMEVC--------CTLG-MLEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVR 223 (379)
T ss_pred HHHHHHHHHHhcCCcEEE--------ECCC-CCCHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHHHHHHHHHHHH
Confidence 467788888888887765 2222 1345677788999999887754432 346789999999999
Q ss_pred HcCCcccc
Q 022982 141 SAGLKAKP 148 (289)
Q Consensus 141 ~~G~~v~~ 148 (289)
+.|++|-+
T Consensus 224 ~~Gi~v~s 231 (379)
T PLN02389 224 EAGISVCS 231 (379)
T ss_pred HcCCeEeE
Confidence 99998644
No 338
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=73.66 E-value=31 Score=33.63 Aligned_cols=177 Identities=19% Similarity=0.222 Sum_probs=109.0
Q ss_pred ceeEecCCCCCCCchhHHHH---HHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecC---CcHHHHHHHhC
Q 022982 26 VTEMRSPHYTLSSSHNVLED---IFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST---GDWAEHLIRNG 99 (289)
Q Consensus 26 lT~V~DkGl~~~~g~~~~~D---lLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~---GtlfE~a~~qg 99 (289)
.|++-+||..+. ..+++. .+...-.=-|++=+++---.=+|.+...+.++++|+.|++|-. |-.+..++.++
T Consensus 101 ~Tein~~Gp~is--~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~Sg~~L~~~L~~~ 178 (310)
T COG1105 101 ETEINFPGPEIS--EAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTSGEALLAALEAK 178 (310)
T ss_pred EEEecCCCCCCC--HHHHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEEEECChHHHHHHHccC
Confidence 899999998665 444444 4445455679999999888889999999999999999998864 65777777776
Q ss_pred Cc---------------------hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCccc-ceeeeec
Q 022982 100 PS---------------------AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAK-PKFAVMF 154 (289)
Q Consensus 100 ~~---------------------~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~~v~-~E~g~k~ 154 (289)
|. ...+|.+.+.+.|...|=||.|. +-+..+.- +.+. |.+-+
T Consensus 179 P~lIKPN~~EL~~~~g~~~~~~~d~i~~a~~l~~~g~~~ViVSlG~~Gal~~~~~~~-----------~~a~~p~~~v-- 245 (310)
T COG1105 179 PWLIKPNREELEALFGRELTTLEDVIKAARELLAEGIENVIVSLGADGALLVTAEGV-----------YFASPPKVQV-- 245 (310)
T ss_pred CcEEecCHHHHHHHhCCCCCChHHHHHHHHHHHHCCCCEEEEEecCcccEEEccCCe-----------EEEeCCCcce--
Confidence 52 23345555666788888888654 33333322 1122 33444
Q ss_pred CCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCc
Q 022982 155 NKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEK 232 (289)
Q Consensus 155 ~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~ek 232 (289)
.+.|| .+|+-.+..+. .|. .-.++++.++.+ ..+|+..+.-+.- |.+..+.++++.+++-.++
T Consensus 246 -vstVG-AGDs~VAGf~~--~~~--~~~~~e~~l~~a---vA~g~a~~~~~~~------~~~~~~~~~~~~~~v~v~~ 308 (310)
T COG1105 246 -VSTVG-AGDSMVAGFLA--GLL--KGKSLEEALRFA---VACGAAAASQKGT------GIPDLDQLKKIYAQVTVEK 308 (310)
T ss_pred -ecCcC-chHHHHHHHHH--HHH--cCCCHHHHHHHH---HHHHHHHhhcCCC------CCCCHHHHHHHhhheEEEe
Confidence 45677 34432222111 110 012355555544 4667766654443 4555666777777665544
No 339
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=73.57 E-value=36 Score=31.34 Aligned_cols=156 Identities=13% Similarity=0.128 Sum_probs=90.3
Q ss_pred CCCCCCceeEecCCCCCCC------chhHHHHHHHhhcccccE-EEecCcc-ccccChhHHHHHHHHHHhCCceecC---
Q 022982 20 KPRRFGVTEMRSPHYTLSS------SHNVLEDIFESMGQFVDG-LKFSGGS-HSLMPKPFIEEVVKRAHQHDVYVST--- 88 (289)
Q Consensus 20 KPR~~GlT~V~DkGl~~~~------g~~~~~DlLe~ag~yID~-lKfg~GT-s~l~p~~~l~eKI~l~~~~gV~v~~--- 88 (289)
.++..++.++++-+.+... -...+++.++.-.+-||+ .|+|.-+ .-.+ +.+++..++||++|+++.-
T Consensus 67 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~Ga~~v~~~~~~g~~~~~~~~--~~~~~i~~~~~~~g~~liv~~~ 144 (258)
T TIGR01949 67 YGKDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMGADAVSIHVNVGSDTEWEQI--RDLGMIAEICDDWGVPLLAMMY 144 (258)
T ss_pred cCCCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCCCCEEEEEEecCCchHHHHH--HHHHHHHHHHHHcCCCEEEEEe
Confidence 4567788888865544321 123478888887777777 5655311 1222 2578888899999975432
Q ss_pred --CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccc
Q 022982 89 --GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRA 166 (289)
Q Consensus 89 --GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~ 166 (289)
|--+.. ..++.+.+..+.+.++|-|+|-+|-. .+ .+.++++.+.. .+.++--+ |.+.
T Consensus 145 ~~Gvh~~~---~~~~~~~~~~~~a~~~GADyikt~~~---~~----~~~l~~~~~~~-----~iPVva~G---Gi~~--- 203 (258)
T TIGR01949 145 PRGPHIDD---RDPELVAHAARLGAELGADIVKTPYT---GD----IDSFRDVVKGC-----PAPVVVAG---GPKT--- 203 (258)
T ss_pred ccCccccc---ccHHHHHHHHHHHHHHCCCEEeccCC---CC----HHHHHHHHHhC-----CCcEEEec---CCCC---
Confidence 210100 11123444457788999999999722 12 34555555421 11222100 0111
Q ss_pred cccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCC
Q 022982 167 FGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHAD 214 (289)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G 214 (289)
+|.++..+.++..+++||+-|. =++.|+.+..
T Consensus 204 ---------------~~~~~~~~~i~~~~~aGa~Gia-~g~~i~~~~d 235 (258)
T TIGR01949 204 ---------------NSDREFLQMIKDAMEAGAAGVA-VGRNIFQHDD 235 (258)
T ss_pred ---------------CCHHHHHHHHHHHHHcCCcEEe-hhhHhhcCCC
Confidence 1477888999999999999543 3567776653
No 340
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=73.55 E-value=39 Score=35.20 Aligned_cols=112 Identities=18% Similarity=0.157 Sum_probs=68.0
Q ss_pred HHHHHHHcCCCEEEecCCcccC----ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 022982 106 YVEDCKQVGFDTIELNVGSLEI----PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (289)
Q Consensus 106 yl~~~k~lGF~~IEISdGti~i----~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 181 (289)
..+.-.+-|.|.+=+=|=+-.- .++...++|+++.+.=|.+ +.+ ..-+-+.+|+. +.+.
T Consensus 272 ~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~~ip---~~v---GGGIr~~~d~~-~~~~---------- 334 (538)
T PLN02617 272 LAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENVFVP---LTV---GGGIRDFTDAN-GRYY---------- 334 (538)
T ss_pred HHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhCCCC---EEE---cCCcccccccc-cccc----------
Confidence 3344457799988776655422 2333488999999853322 222 11111112211 1111
Q ss_pred ccHHHHHHHHHHHHHccCcEEEEeccccc------cCCCCccHHHHHHHHhccCCCceEEecC
Q 022982 182 EDVDLLIRRAERCLEAGADMIMIDSDDVC------KHADSLRADIIAKVIGRLGLEKTMFEAT 238 (289)
Q Consensus 182 ~~~~~~I~~~~~dLeAGA~~ViiEarGI~------d~~G~~r~d~v~~ii~~l~~eklifEAP 238 (289)
-.++.+++-|++|||+|+|-+.-+. .+.-...+++++++++++|-.+|+.=-.
T Consensus 335 ----~~~e~~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD 393 (538)
T PLN02617 335 ----SSLEVASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSID 393 (538)
T ss_pred ----chHHHHHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEe
Confidence 1379999999999999999885333 3345556889999999888666665443
No 341
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=73.53 E-value=20 Score=30.23 Aligned_cols=72 Identities=22% Similarity=0.366 Sum_probs=47.8
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHc--C--CcccceeeeecCCCCCCCccccccccccccCC
Q 022982 100 PSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA--G--LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (289)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~--G--~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~ 175 (289)
.+.+.+.++++.+.|++.|++.- ++++.+++. | ..+. +|+-.+. +
T Consensus 12 ~~~~~~~~~~~~~~gv~gi~~~g-----------~~i~~~~~~~~~~~~~v~--~~v~~~~---~--------------- 60 (201)
T cd00945 12 LEDIAKLCDEAIEYGFAAVCVNP-----------GYVRLAADALAGSDVPVI--VVVGFPT---G--------------- 60 (201)
T ss_pred HHHHHHHHHHHHHhCCcEEEECH-----------HHHHHHHHHhCCCCCeEE--EEecCCC---C---------------
Confidence 34688889999999999999985 555555542 1 1111 2221100 0
Q ss_pred CCccccccHHHHHHHHHHHHHccCcEEEEecc
Q 022982 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 176 ~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
+ ...++.++++++..++||+.|++-.-
T Consensus 61 ~-----~~~~~~~~~a~~a~~~Gad~i~v~~~ 87 (201)
T cd00945 61 L-----TTTEVKVAEVEEAIDLGADEIDVVIN 87 (201)
T ss_pred C-----CcHHHHHHHHHHHHHcCCCEEEEecc
Confidence 0 12678899999999999999999764
No 342
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=73.50 E-value=51 Score=31.59 Aligned_cols=195 Identities=14% Similarity=0.195 Sum_probs=111.4
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceec----CCc--H---HHH------HHHhC-----C-
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS----TGD--W---AEH------LIRNG-----P- 100 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~----~Gt--l---fE~------a~~qg-----~- 100 (289)
.++++|..|-+- +++-|.+-+++-+.++.-|+-|.+.+.++- +|+ + ++. ++++. |
T Consensus 5 ~~k~iL~~A~~~----~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~~VPV 80 (288)
T TIGR00167 5 DVKELLQDAKEE----GYAIPAFNINNLETINAVLEAAAEEKSPVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPYGVPV 80 (288)
T ss_pred cHHHHHHHHHHC----CceEEEEEECCHHHHHHHHHHHHHHCCCEEEECCcchhhccCCHHHHHHHHHHHHHhccCCCcE
Confidence 455555554332 456666666666677777777766665432 121 1 111 11111 0
Q ss_pred ------chHHHHHHHHHHcCCCEEEecCCcccCChhH--HHHHHHHHHHcCCcccceeeeecCCCCCCCcccc-cccccc
Q 022982 101 ------SAFKEYVEDCKQVGFDTIELNVGSLEIPEET--LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDR-AFGAYV 171 (289)
Q Consensus 101 ------~~~~~yl~~~k~lGF~~IEISdGti~i~~~~--r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~-~~~~~~ 171 (289)
..=.+++..|-+.||+.|=+..-.+++.+-- =.++++.++..|.-|--|+|.=-+ ++|. .-..
T Consensus 81 ~lHLDHg~~~e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg------~e~~~~~~~-- 152 (288)
T TIGR00167 81 ALHLDHGASEEDCAQAVKAGFSSVMIDGSHEPFEENIELTKKVVERAHKMGVSVEAELGTLGG------EEDGVSVAD-- 152 (288)
T ss_pred EEECCCCCCHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccC------ccCCccccc--
Confidence 0123778888899999999976665443322 236777888889999999998321 1111 0000
Q ss_pred ccCCCCccccccHHHHHHHHHHHHH-ccCcEEEEecc---ccccCCCC-ccHHHHHHHHhccCCCceEEecC-Cc-hhHH
Q 022982 172 ARAPRSTEYVEDVDLLIRRAERCLE-AGADMIMIDSD---DVCKHADS-LRADIIAKVIGRLGLEKTMFEAT-NP-RTSE 244 (289)
Q Consensus 172 ~~~~~~~~~~~~~~~~I~~~~~dLe-AGA~~ViiEar---GI~d~~G~-~r~d~v~~ii~~l~~eklifEAP-~k-~qQ~ 244 (289)
. .....||+ +++++++ -|.|.+-|==- |+|...-+ ++.+.+.+|-+.++.-=++==+. .+ +|..
T Consensus 153 ~-----~~~~T~pe----ea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v~vPLVlHGgSG~~~e~~~ 223 (288)
T TIGR00167 153 E-----SALYTDPE----EAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYVNLPLVLHGGSGIPDEEIK 223 (288)
T ss_pred c-----cccCCCHH----HHHHHHhccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHH
Confidence 0 00011465 5555554 59998876543 99988767 99999999988776332222222 23 3444
Q ss_pred HHHHHhCCCcccc
Q 022982 245 WFIRRYGPKVNLF 257 (289)
Q Consensus 245 ~~I~~fG~~VNLg 257 (289)
..|+.==..||++
T Consensus 224 ~ai~~Gi~KiNi~ 236 (288)
T TIGR00167 224 KAISLGVVKVNID 236 (288)
T ss_pred HHHHcCCeEEEcC
Confidence 4555544567775
No 343
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=73.40 E-value=74 Score=29.30 Aligned_cols=127 Identities=23% Similarity=0.311 Sum_probs=84.7
Q ss_pred HHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 022982 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (289)
Q Consensus 43 ~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (289)
+.+.++..|. +-.+=|++|--.+-+ .+.+.++.+++. +++++..|.- .. .-+++++..+++|++.|-||
T Consensus 56 ~~~~~~~~g~-~~~v~~~gGEPll~~--d~~ei~~~~~~~~~~~~~~~TnG-~~------~~~~~~~~l~~~g~~~v~iS 125 (347)
T COG0535 56 VIDELAELGE-IPVVIFTGGEPLLRP--DLLEIVEYARKKGGIRVSLSTNG-TL------LTEEVLEKLKEAGLDYVSIS 125 (347)
T ss_pred HHHHHHHcCC-eeEEEEeCCCccccc--cHHHHHHHHhhcCCeEEEEeCCC-cc------CCHHHHHHHHhcCCcEEEEE
Confidence 3566677777 888889999888885 799999999965 7766643322 11 12466777899999999999
Q ss_pred CCcccCCh-----------hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHH
Q 022982 122 VGSLEIPE-----------ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRR 190 (289)
Q Consensus 122 dGti~i~~-----------~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~ 190 (289)
-.+.+-.. +...+.|+.+++.|+.+..-+.+.- .+.+++.+.
T Consensus 126 id~~~~e~hd~~rg~~g~~~~~~~~i~~~~~~g~~~~~~~~v~~---------------------------~n~~~l~~~ 178 (347)
T COG0535 126 LDGLDPETHDPIRGVKGVFKRAVEAIKNLKEAGILVVINTTVTK---------------------------INYDELPEI 178 (347)
T ss_pred ecCCChhhhhhhcCCCcHHHHHHHHHHHHHHcCCeeeEEEEEec---------------------------CcHHHHHHH
Confidence 77754332 3556778888887775333333310 124556666
Q ss_pred HHHHHHccCcEEEEec
Q 022982 191 AERCLEAGADMIMIDS 206 (289)
Q Consensus 191 ~~~dLeAGA~~ViiEa 206 (289)
++...+.|++.+.+-.
T Consensus 179 ~~~~~~~g~~~~~~~~ 194 (347)
T COG0535 179 ADLAAELGVDELNVFP 194 (347)
T ss_pred HHHHHHcCCCEEEEEE
Confidence 6777788987655543
No 344
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=73.38 E-value=16 Score=34.80 Aligned_cols=94 Identities=13% Similarity=0.139 Sum_probs=70.7
Q ss_pred HHHHHHHhhcccccEEEecCccccccChh---HHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHH--HcCC
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKP---FIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCK--QVGF 115 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~---~l~eKI~l~~~~gV~v~~G-tlfE~a~~qg~~~~~~yl~~~k--~lGF 115 (289)
..+.+++..++|+.++|.|+.-..-+-.+ .|++.|+.+++.|++|..- =+..+- +.+..|.+.+- ++|+
T Consensus 42 f~~~ivd~~~~~v~~vK~gla~f~~~G~~G~~~l~~~i~~l~~~g~~VilD~K~~DI~-----nTv~~ya~a~~~~~~g~ 116 (278)
T PRK00125 42 FCRIIVDATADLVAAFKPQIAYFEAHGAEGLAQLERTIAYLREAGVLVIADAKRGDIG-----STAEAYAKAAFESPLEA 116 (278)
T ss_pred HHHHHHHhcCCcccEEeccHHHHHhcCchhhhHHHHHHHHHHHCCCcEEEEeecCChH-----HHHHHHHHHHhcCccCC
Confidence 34789999999999999999777666544 6889999999999887763 244432 24566777666 7999
Q ss_pred CEEEecCCcccCChhHHHHHHHHHHHcC
Q 022982 116 DTIELNVGSLEIPEETLLRYVRLVKSAG 143 (289)
Q Consensus 116 ~~IEISdGti~i~~~~r~~lI~~~~~~G 143 (289)
|+|-|+- -+..+....+++.+++.|
T Consensus 117 DavTVhp---~~G~d~l~~~~~~~~~~~ 141 (278)
T PRK00125 117 DAVTVSP---YMGFDSLEPYLEYAEEHG 141 (278)
T ss_pred cEEEECC---cCCHHHHHHHHHHHHhcC
Confidence 9999994 456666667777776654
No 345
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=72.93 E-value=13 Score=36.72 Aligned_cols=54 Identities=24% Similarity=0.359 Sum_probs=43.8
Q ss_pred HHHHHHHHHHccCcEEEEecc-----ccccCCCCccHHHHHHHHhccC-CCceEEecCCc
Q 022982 187 LIRRAERCLEAGADMIMIDSD-----DVCKHADSLRADIIAKVIGRLG-LEKTMFEATNP 240 (289)
Q Consensus 187 ~I~~~~~dLeAGA~~ViiEar-----GI~d~~G~~r~d~v~~ii~~l~-~eklifEAP~k 240 (289)
....++..+.+||+-+|||-- -++|..-.+..+.++++++.+- +++.+=..|+|
T Consensus 288 ~~~~a~AAva~GAdGliIE~H~~pd~AlsD~~qsl~p~~~~~l~~~i~~i~~~~g~~~~~ 347 (352)
T PRK13396 288 VPSMAMAAIAAGTDSLMIEVHPNPAKALSDGPQSLTPDRFDRLMQELAVIGKTVGRWPQP 347 (352)
T ss_pred HHHHHHHHHhhCCCeEEEEecCCcccCCChhhhcCCHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 347888999999999999983 6889999999999999997765 55555556655
No 346
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=72.92 E-value=55 Score=34.33 Aligned_cols=141 Identities=13% Similarity=0.195 Sum_probs=81.2
Q ss_pred hhHHHHHHHhhccc-ccEEEecCccccccChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022982 40 HNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (289)
Q Consensus 40 ~~~~~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (289)
...+.+.++...++ +|++=+.++...-+..+.+.---.+.+.+|+.+.+- |- .-+++..+.+.+..++.+|++.
T Consensus 337 ~~~l~~~~~~L~~~~~d~i~Vtd~~~g~~r~~s~~~a~~l~~~~gi~~i~Hltc----~d~n~~~l~~~L~~~~~~Gv~n 412 (612)
T PRK08645 337 TDKFLEGAKALKEAGVDAITLADNPLARVRISNIALASLIKRELGIEPLVHITC----RDRNLIGLQSHLLGLHALGIRN 412 (612)
T ss_pred HHHHHHHHHHHhcCCCCEEEcCCCCCcccccCHHHHHHHHHHHhCCCeeeEecC----CCcCHHHHHHHHHHHHHcCCce
Confidence 44566666666667 899988887766444333444334444558766542 21 1233345788899999999998
Q ss_pred EEecCCcc-------------cCChhHHHHHHHHHHHcCCcc-------cceeeeecCCCCCCCccccccccccccCCCC
Q 022982 118 IELNVGSL-------------EIPEETLLRYVRLVKSAGLKA-------KPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (289)
Q Consensus 118 IEISdGti-------------~i~~~~r~~lI~~~~~~G~~v-------~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 177 (289)
|=+=-|-- +++..+..++|+... .|... .+.|.+ | ....|+..
T Consensus 413 ILaLrGD~p~~g~~~~~~~vfd~~a~dLv~~ir~~~-~g~~~~g~~~~~~~~f~i-------g--------~A~~P~~~- 475 (612)
T PRK08645 413 VLAITGDPAKVGDFPGATSVYDLNSFGLIKLIKQLN-EGISYSGKPLGKKTNFSI-------G--------GAFNPNVR- 475 (612)
T ss_pred EEEccCCCCCCCCCCCCCCCccccHHHHHHHHHHHh-CCCCcCCCccCCCCceee-------e--------EEeCCCCC-
Confidence 84433322 234445555555442 23210 111111 1 11122222
Q ss_pred ccccccHHHHHHHHHHHHHccCcEEEEec
Q 022982 178 TEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 178 ~~~~~~~~~~I~~~~~dLeAGA~~ViiEa 206 (289)
+.+.-++.+++-++|||+++|.--
T Consensus 476 -----~~~~d~~~L~~Ki~aGAdf~iTQ~ 499 (612)
T PRK08645 476 -----NLDKEVKRLEKKIEAGADYFITQP 499 (612)
T ss_pred -----ChHHHHHHHHHHHHcCCCEEEecc
Confidence 467778999999999999999865
No 347
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=72.86 E-value=9 Score=40.88 Aligned_cols=62 Identities=23% Similarity=0.211 Sum_probs=46.3
Q ss_pred ChhHHHHHHHHHHhCCceec--CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCc
Q 022982 68 PKPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (289)
Q Consensus 68 p~~~l~eKI~l~~~~gV~v~--~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~ 145 (289)
+++..++-|+.+|+.||.+. +|.--+.|-. -++++|++.+ +-...+++|.++|+..++.|-.
T Consensus 446 ~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~a-----------IA~elGId~v-----~A~~~PedK~~iV~~lQ~~G~~ 509 (679)
T PRK01122 446 VKPGIKERFAELRKMGIKTVMITGDNPLTAAA-----------IAAEAGVDDF-----LAEATPEDKLALIRQEQAEGRL 509 (679)
T ss_pred CchhHHHHHHHHHHCCCeEEEECCCCHHHHHH-----------HHHHcCCcEE-----EccCCHHHHHHHHHHHHHcCCe
Confidence 45678999999999999544 6864444432 3477888643 5678999999999999998754
No 348
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=72.84 E-value=14 Score=35.65 Aligned_cols=81 Identities=16% Similarity=0.200 Sum_probs=53.7
Q ss_pred EEecCccccccChhHHHHHHHHHHhC-CceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-------
Q 022982 57 LKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL------- 125 (289)
Q Consensus 57 lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~~---GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti------- 125 (289)
.|=|+|++++-.++.+.+.++-+++. ++++.- .+|-+. .......++.+.+.+.|.++|.|+..+.
T Consensus 106 ~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~---~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~ 182 (333)
T PRK11815 106 QNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQ---DSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSP 182 (333)
T ss_pred cCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCC---cCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCc
Confidence 36788999999999999999999874 554442 122210 0001356788889999999999986542
Q ss_pred ----cCChhHHHHHHHHHHH
Q 022982 126 ----EIPEETLLRYVRLVKS 141 (289)
Q Consensus 126 ----~i~~~~r~~lI~~~~~ 141 (289)
.+++-+ .++|+++++
T Consensus 183 ~~~~~~~~~~-~~~i~~v~~ 201 (333)
T PRK11815 183 KENREIPPLD-YDRVYRLKR 201 (333)
T ss_pred cccccCCCcC-HHHHHHHHH
Confidence 122233 367777776
No 349
>PRK09234 fbiC FO synthase; Reviewed
Probab=72.71 E-value=48 Score=36.43 Aligned_cols=117 Identities=17% Similarity=0.288 Sum_probs=77.5
Q ss_pred EEecCccccccChhHHHHHHHHHHhC--CceecCCcHHHHHH---HhCCchHHHHHHHHHHcCCCEE-----EecCCc--
Q 022982 57 LKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLI---RNGPSAFKEYVEDCKQVGFDTI-----ELNVGS-- 124 (289)
Q Consensus 57 lKfg~GTs~l~p~~~l~eKI~l~~~~--gV~v~~GtlfE~a~---~qg~~~~~~yl~~~k~lGF~~I-----EISdGt-- 124 (289)
+-+-.|...-++.+.+.+.++..|+. +|.+..=+-.|+.+ .-| -..++|++.+|+.|.+.+ ||-+--
T Consensus 577 v~i~gG~~p~~~~~~y~~lir~IK~~~p~i~i~afsp~Ei~~~a~~~G-l~~~e~l~~LkeAGLds~pgt~aeil~d~vr 655 (843)
T PRK09234 577 VCMQGGIHPELPGTGYADLVRAVKARVPSMHVHAFSPMEIVNGAARLG-LSIREWLTALREAGLDTIPGTAAEILDDEVR 655 (843)
T ss_pred EEEecCCCCCcCHHHHHHHHHHHHHhCCCeeEEecChHHHHHHHHHcC-CCHHHHHHHHHHhCcCccCCCchhhCCHHHH
Confidence 34435665555666677778878775 56665445566652 222 358999999999999988 233320
Q ss_pred -----ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccC
Q 022982 125 -----LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 199 (289)
Q Consensus 125 -----i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA 199 (289)
-.++.++|++.|+.+++.|+++-+ |..++.. ++++++++.+..--+-+.
T Consensus 656 ~~i~p~k~~~~~wle~i~~Ah~lGi~~~s--tmm~G~~------------------------Et~edrv~hl~~LreLq~ 709 (843)
T PRK09234 656 WVLTKGKLPTAEWIEVVTTAHEVGLRSSS--TMMYGHV------------------------DTPRHWVAHLRVLRDIQD 709 (843)
T ss_pred hhcCCCCCCHHHHHHHHHHHHHcCCCccc--ceEEcCC------------------------CCHHHHHHHHHHHHhcCc
Confidence 145788999999999999998766 3333221 247777887776666665
Q ss_pred c
Q 022982 200 D 200 (289)
Q Consensus 200 ~ 200 (289)
+
T Consensus 710 ~ 710 (843)
T PRK09234 710 R 710 (843)
T ss_pred c
Confidence 3
No 350
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=72.66 E-value=21 Score=35.80 Aligned_cols=95 Identities=6% Similarity=0.041 Sum_probs=60.7
Q ss_pred chhHHHHHHHhhccc-ccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHH-HHHHHHcCCC
Q 022982 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEY-VEDCKQVGFD 116 (289)
Q Consensus 39 g~~~~~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~y-l~~~k~lGF~ 116 (289)
.+.....+++..++| ++++|.|+--..-+..+.+++.-+...+ ..+.. ... ..+ ...| .+.+.+.|.|
T Consensus 183 ~~~~A~~i~~~l~~~~~~~iKvG~~L~~~~G~~iVk~Lr~~~~~--~~I~~----DLK-~~D---i~~~vv~~~a~aGAD 252 (391)
T PRK13307 183 DLEEVERVLSQLPKSDHIIIEAGTPLIKKFGLEVISKIREVRPD--AFIVA----DLK-TLD---TGNLEARMAADATAD 252 (391)
T ss_pred CHHHHHHHHHhcccccceEEEECHHHHHHhCHHHHHHHHHhCCC--CeEEE----Eec-ccC---hhhHHHHHHHhcCCC
Confidence 566888899999999 9999999876666665655555443211 11111 001 111 2233 6667888888
Q ss_pred EEEecCCcccCChhHHHHHHHHHHHcCCcc
Q 022982 117 TIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (289)
Q Consensus 117 ~IEISdGti~i~~~~r~~lI~~~~~~G~~v 146 (289)
.+-|.-- -+.+.-.+.++.+++.|.++
T Consensus 253 ~vTVH~e---a~~~ti~~ai~~akk~Gikv 279 (391)
T PRK13307 253 AVVISGL---APISTIEKAIHEAQKTGIYS 279 (391)
T ss_pred EEEEecc---CCHHHHHHHHHHHHHcCCEE
Confidence 8888853 24555677888888887653
No 351
>PLN02826 dihydroorotate dehydrogenase
Probab=72.65 E-value=52 Score=33.09 Aligned_cols=131 Identities=13% Similarity=0.164 Sum_probs=0.0
Q ss_pred chhHHHHHHHhhcccccEEEec------CccccccChhHHHHHHHHHHhC----------CceecC-CcHHHHHHHhCCc
Q 022982 39 SHNVLEDIFESMGQFVDGLKFS------GGSHSLMPKPFIEEVVKRAHQH----------DVYVST-GDWAEHLIRNGPS 101 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg------~GTs~l~p~~~l~eKI~l~~~~----------gV~v~~-GtlfE~a~~qg~~ 101 (289)
....+...++.+++|.|++=+- -|-..+..++.+.+.++..++. .+++.- .+. -+...
T Consensus 202 ~~~Dy~~~~~~~~~~aDylelNiScPNtpglr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaP---dl~~~-- 276 (409)
T PLN02826 202 AAADYVQGVRALSQYADYLVINVSSPNTPGLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAP---DLSKE-- 276 (409)
T ss_pred cHHHHHHHHHHHhhhCCEEEEECCCCCCCCcccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCC---CCCHH--
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHH--------------------HHHHHHHHHcCCcccceeeeecCCCCCCC
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETL--------------------LRYVRLVKSAGLKAKPKFAVMFNKSDIPS 161 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r--------------------~~lI~~~~~~G~~v~~E~g~k~~~~evg~ 161 (289)
.+++..+.|.+.|.|.|=++|-++..+.+.. +++|+.+.+.--.-+|=+|+
T Consensus 277 di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ipIIgv--------- 347 (409)
T PLN02826 277 DLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLVGC--------- 347 (409)
T ss_pred HHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCCCcEEEE---------
Q ss_pred ccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEE
Q 022982 162 DRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 204 (289)
Q Consensus 162 ~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~Vii 204 (289)
|.+.+ -+.+-+.|.|||+.|-+
T Consensus 348 ------GGI~s---------------g~Da~e~i~AGAs~VQv 369 (409)
T PLN02826 348 ------GGVSS---------------GEDAYKKIRAGASLVQL 369 (409)
T ss_pred ------CCCCC---------------HHHHHHHHHhCCCeeee
No 352
>PRK05660 HemN family oxidoreductase; Provisional
Probab=72.51 E-value=20 Score=35.02 Aligned_cols=119 Identities=13% Similarity=0.116 Sum_probs=82.7
Q ss_pred eeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCc-eecCC--cHHHHHHHh-C---
Q 022982 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G--- 99 (289)
Q Consensus 27 T~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV-~v~~G--tlfE~a~~q-g--- 99 (289)
|.-++=|=+..-.+..++++++....+.++.+-.==|.-.-|...-+++++.++++|| .++-| ++-...+.. +
T Consensus 61 ti~~GGGtPs~l~~~~l~~ll~~l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~~ 140 (378)
T PRK05660 61 SIFIGGGTPSLFSAEAIQRLLDGVRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIH 140 (378)
T ss_pred EEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhCCCC
Confidence 5555555433336789999999998876543211112233456677899999999999 88888 665544422 1
Q ss_pred -CchHHHHHHHHHHcCCC--EEEecCCcccCChhHHHHHHHHHHHcCCc
Q 022982 100 -PSAFKEYVEDCKQVGFD--TIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (289)
Q Consensus 100 -~~~~~~yl~~~k~lGF~--~IEISdGti~i~~~~r~~lI~~~~~~G~~ 145 (289)
.+.+.+-++.+++.||+ .+-+.-|.-.-+.+++.+-++.+.+.|..
T Consensus 141 ~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt~~~~~~~l~~~~~l~p~ 189 (378)
T PRK05660 141 GPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQSLEEALDDLRQAIALNPP 189 (378)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhcCCC
Confidence 12355567788999998 46777888788888999999999987644
No 353
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=72.38 E-value=8.8 Score=37.37 Aligned_cols=67 Identities=25% Similarity=0.308 Sum_probs=42.8
Q ss_pred HHHHHHHHhCCceecC-CcH-HHHHHHhCCc----hHHHHHHHHHHcCCCEEEecCCcccC-ChhHHHHHHHHHHH
Q 022982 73 EEVVKRAHQHDVYVST-GDW-AEHLIRNGPS----AFKEYVEDCKQVGFDTIELNVGSLEI-PEETLLRYVRLVKS 141 (289)
Q Consensus 73 ~eKI~l~~~~gV~v~~-Gtl-fE~a~~qg~~----~~~~yl~~~k~lGF~~IEISdGti~i-~~~~r~~lI~~~~~ 141 (289)
.+-+..||++||+|.+ |++ ++. + .++. -++.-++.+++.|||.|.|.==.... +.+++..++..+++
T Consensus 67 ~~~~~~A~~~~v~v~~~~~~~~~~-l-~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~~~d~~~~t~llke 140 (358)
T cd02875 67 DELLCYAHSKGVRLVLKGDVPLEQ-I-SNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKGSPEYYALTELVKE 140 (358)
T ss_pred HHHHHHHHHcCCEEEEECccCHHH-c-CCHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCCCcchHHHHHHHHHH
Confidence 5778899999999888 553 333 2 2222 36788899999999999986433321 22344444444443
No 354
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=72.36 E-value=18 Score=36.26 Aligned_cols=121 Identities=12% Similarity=0.104 Sum_probs=81.9
Q ss_pred eeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCc-eecCC--cHHHHHHHh-C---
Q 022982 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G--- 99 (289)
Q Consensus 27 T~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV-~v~~G--tlfE~a~~q-g--- 99 (289)
+..++=|-+..-.+..++++++..-.+.++.+-.-=|.-.-|...-++++++++++|+ .++.| ++-+..+.. +
T Consensus 106 ~i~fgGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~ 185 (453)
T PRK13347 106 QLHWGGGTPTILNPDQFERLMAALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAINRIQ 185 (453)
T ss_pred EEEEcCcccccCCHHHHHHHHHHHHHhCCCCCCceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCC
Confidence 4444545433226789999999988876542211112234455566899999999999 77778 676555422 1
Q ss_pred -CchHHHHHHHHHHcCCCE--EEecCCcccCChhHHHHHHHHHHHcCCccc
Q 022982 100 -PSAFKEYVEDCKQVGFDT--IELNVGSLEIPEETLLRYVRLVKSAGLKAK 147 (289)
Q Consensus 100 -~~~~~~yl~~~k~lGF~~--IEISdGti~i~~~~r~~lI~~~~~~G~~v~ 147 (289)
.+.+.+-++.+++.||+. +-+.-|.=.-+.++..+-++.+.+.|..-+
T Consensus 186 ~~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~p~~i 236 (453)
T PRK13347 186 PEEMVARAVELLRAAGFESINFDLIYGLPHQTVESFRETLDKVIALSPDRI 236 (453)
T ss_pred CHHHHHHHHHHHHhcCCCcEEEeEEEeCCCCCHHHHHHHHHHHHhcCCCEE
Confidence 124667788889999984 556667777788888889999998776533
No 355
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=72.25 E-value=45 Score=32.90 Aligned_cols=96 Identities=20% Similarity=0.393 Sum_probs=56.5
Q ss_pred chhHHHHHHHhhccc--ccEEEe--cCccccccChhHHHHHHHHHHh----CCce--ecC-CcHHHHHHHhCCchHHHHH
Q 022982 39 SHNVLEDIFESMGQF--VDGLKF--SGGSHSLMPKPFIEEVVKRAHQ----HDVY--VST-GDWAEHLIRNGPSAFKEYV 107 (289)
Q Consensus 39 g~~~~~DlLe~ag~y--ID~lKf--g~GTs~l~p~~~l~eKI~l~~~----~gV~--v~~-GtlfE~a~~qg~~~~~~yl 107 (289)
....++.+++.+.+. +..+-| .+|=-.|.|...+++-++++++ .+|. +-| |+++- ++..
T Consensus 49 s~e~~~~~i~~~~~~~~~~~v~i~f~GGEPlL~~~~~~~~~~~~~~~~~~~~~i~~~i~TNG~ll~----------~e~~ 118 (412)
T PRK13745 49 SDELLEKFIKEYINSQTMPQVLFTWHGGETLMRPLSFYKKALELQKKYARGRQIDNCIQTNGTLLT----------DEWC 118 (412)
T ss_pred CHHHHHHHHHHHHHcCCCCeEEEEEEccccCCCcHHHHHHHHHHHHHHcCCCceEEEEeecCEeCC----------HHHH
Confidence 455666666543321 234444 4588888876667777777654 3443 335 76653 3445
Q ss_pred HHHHHcCCCEEEec-CCcccCChhH------------HHHHHHHHHHcCCc
Q 022982 108 EDCKQVGFDTIELN-VGSLEIPEET------------LLRYVRLVKSAGLK 145 (289)
Q Consensus 108 ~~~k~lGF~~IEIS-dGti~i~~~~------------r~~lI~~~~~~G~~ 145 (289)
+.+++.|| .|-|| ||.-++-+.- =.+-|+.++++|..
T Consensus 119 ~~l~~~~~-~v~ISlDG~~~~hD~~R~~~~g~gsf~~v~~~i~~l~~~gi~ 168 (412)
T PRK13745 119 EFFRENNF-LVGVSIDGPQEFHDEYRKNKMGKPSFVKVMKGINLLKKHGVE 168 (412)
T ss_pred HHHHHcCe-EEEEEecCCHHHhhhhcCCCCCCccHHHHHHHHHHHHHcCCC
Confidence 56667788 89999 7764322222 23466788887764
No 356
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=72.16 E-value=50 Score=30.41 Aligned_cols=148 Identities=14% Similarity=0.089 Sum_probs=85.2
Q ss_pred hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCC----cc-----cCChhHHHHHHHHHH
Q 022982 70 PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVG----SL-----EIPEETLLRYVRLVK 140 (289)
Q Consensus 70 ~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdG----ti-----~i~~~~r~~lI~~~~ 140 (289)
+.+++..+..++.|+.++.- -| ..-++.++.+|+.|++.|-++-- +. .-+.+++.+.++.++
T Consensus 98 ~~~~~i~~~~~~~~i~~~~~--------~g-~~~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~~~~~ai~~l~ 168 (296)
T TIGR00433 98 EYVEAMVQIVEEMGLKTCAT--------LG-LLDPEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYDDRVDTLENAK 168 (296)
T ss_pred HHHHHHHHHHHhCCCeEEec--------CC-CCCHHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHHHHHHHHHHHH
Confidence 36777777778888866421 11 12268888999999999544321 11 235678889999999
Q ss_pred HcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEec----cc--cccCCC
Q 022982 141 SAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS----DD--VCKHAD 214 (289)
Q Consensus 141 ~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEa----rG--I~d~~G 214 (289)
+.|+++.+-+=+ +..+ +.+++++.+..-.+.|.+.|-+=. .| +.+ ..
T Consensus 169 ~~Gi~v~~~~i~--Gl~e------------------------t~~d~~~~~~~l~~l~~~~i~l~~l~p~~gT~l~~-~~ 221 (296)
T TIGR00433 169 KAGLKVCSGGIF--GLGE------------------------TVEDRIGLALALANLPPESVPINFLVKIKGTPLAD-NK 221 (296)
T ss_pred HcCCEEEEeEEE--eCCC------------------------CHHHHHHHHHHHHhCCCCEEEeeeeEEcCCCccCC-CC
Confidence 999986654322 1111 256667777776778988764332 22 333 22
Q ss_pred CccH-HHHH---HHHhccCCCceEEecCCc----hhHHHHHHHhCCC
Q 022982 215 SLRA-DIIA---KVIGRLGLEKTMFEATNP----RTSEWFIRRYGPK 253 (289)
Q Consensus 215 ~~r~-d~v~---~ii~~l~~eklifEAP~k----~qQ~~~I~~fG~~ 253 (289)
.+.. +.+. .....+|...|..-+..+ +.+......+|.|
T Consensus 222 ~~s~~~~~~~ia~~r~~lp~~~i~~~~~~~~~~~~~~~~~~l~~G~n 268 (296)
T TIGR00433 222 ELSADDALKTIALARIIMPKAEIRLAGGREVNMRELQQAMCFMAGAN 268 (296)
T ss_pred CCCHHHHHHHHHHHHHHCCcceEEEeCCcchhhhhhHHHHHHHhcCc
Confidence 3333 2222 222345556676666654 2233334556644
No 357
>PRK14847 hypothetical protein; Provisional
Probab=72.14 E-value=58 Score=32.04 Aligned_cols=143 Identities=11% Similarity=0.034 Sum_probs=88.4
Q ss_pred cEEEecCccccccCh-------h----HHHHHHHHHHhCCc-------eecCCcHHHHHHHhCCchHHHHHHHHHHc-C-
Q 022982 55 DGLKFSGGSHSLMPK-------P----FIEEVVKRAHQHDV-------YVSTGDWAEHLIRNGPSAFKEYVEDCKQV-G- 114 (289)
Q Consensus 55 D~lKfg~GTs~l~p~-------~----~l~eKI~l~~~~gV-------~v~~GtlfE~a~~qg~~~~~~yl~~~k~l-G- 114 (289)
+.+-+...||-++-+ + .+.+-++++++++. .|..| +|-+-+-+++-+.++.+.+.+. |
T Consensus 125 ~~Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~--~EDasRad~dfL~~~~~~a~~~~ga 202 (333)
T PRK14847 125 AIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQWIYEYS--PETFSLAELDFAREVCDAVSAIWGP 202 (333)
T ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCceEEEEe--eecCCCCCHHHHHHHHHHHHHHhCC
Confidence 446666666654322 2 23456678888843 23222 2334344444555666655444 4
Q ss_pred ----CCEEEecCCcccCChhHHHHHHHHHHHcCCc--ccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHH
Q 022982 115 ----FDTIELNVGSLEIPEETLLRYVRLVKSAGLK--AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 188 (289)
Q Consensus 115 ----F~~IEISdGti~i~~~~r~~lI~~~~~~G~~--v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I 188 (289)
-+.|-++|-.--+.+.+-.++|+.++++ +. ...++++.+ -.|....+
T Consensus 203 ~r~~a~~i~l~DTVG~~~P~~~~~~i~~l~~~-~~~~~~v~i~~H~--------------------------HnD~GlA~ 255 (333)
T PRK14847 203 TPQRKMIINLPATVESSTANVYADQIEWMHRS-LARRDCIVLSVHP--------------------------HNDRGTAV 255 (333)
T ss_pred CccCCcEEEeCCccccCCHHHHHHHHHHHHHh-cCCCCCcEEEEEe--------------------------CCCCchHH
Confidence 6678899988888888888899988763 10 012344422 22344457
Q ss_pred HHHHHHHHccCcEEEEecc--ccccCCCCccHHHHHHHHhcc
Q 022982 189 RRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 189 ~~~~~dLeAGA~~ViiEar--GI~d~~G~~r~d~v~~ii~~l 228 (289)
......++|||++| ++- |+=+..||...+.+-..+...
T Consensus 256 ANslaA~~aGa~~i--~~tv~G~GERaGNa~lE~v~~~L~~~ 295 (333)
T PRK14847 256 AAAELAVLAGAERI--EGCLFGNGERTGNVDLVALALNLERQ 295 (333)
T ss_pred HHHHHHHHhCCCEE--EeeCCcCCccccchhHHHHHHHHHhc
Confidence 78888999999995 554 887889998887776555433
No 358
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=72.04 E-value=19 Score=35.45 Aligned_cols=119 Identities=18% Similarity=0.097 Sum_probs=79.1
Q ss_pred eeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCc-eecCC--cHHHHHHHh-C---
Q 022982 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G--- 99 (289)
Q Consensus 27 T~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV-~v~~G--tlfE~a~~q-g--- 99 (289)
|.-++-|-+....+..++.+++..-.+++..+-.-=|.-.-|...=.++++.++++|| .++-| ++-+..+.. |
T Consensus 69 ~iy~GGGTps~l~~~~l~~ll~~i~~~~~~~~~~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~ 148 (400)
T PRK07379 69 TVFFGGGTPSLLSVEQLERILTTLDQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSH 148 (400)
T ss_pred EEEECCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCC
Confidence 4445444333227889999999998876543222222334566666799999999999 88888 676666643 1
Q ss_pred -CchHHHHHHHHHHcCCCEE--EecCCcccCChhHHHHHHHHHHHcCCc
Q 022982 100 -PSAFKEYVEDCKQVGFDTI--ELNVGSLEIPEETLLRYVRLVKSAGLK 145 (289)
Q Consensus 100 -~~~~~~yl~~~k~lGF~~I--EISdGti~i~~~~r~~lI~~~~~~G~~ 145 (289)
++.+.+-++.+++.||+.| -+--|.=.-+.+++.+-++.+.+.+..
T Consensus 149 ~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~ 197 (400)
T PRK07379 149 RVKDIFAAVDLIHQAGIENFSLDLISGLPHQTLEDWQASLEAAIALNPT 197 (400)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHcCCCC
Confidence 2346667778899999854 444555455667777778888876654
No 359
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=71.95 E-value=35 Score=33.63 Aligned_cols=138 Identities=19% Similarity=0.209 Sum_probs=84.8
Q ss_pred hhcccccEEEecCccccccChhHHHHHHHHHHhCCc--eecCCc---HHHHHHHhCCchHHHHHHHHHHcCCCEEEecC-
Q 022982 49 SMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV--YVSTGD---WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV- 122 (289)
Q Consensus 49 ~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV--~v~~Gt---lfE~a~~qg~~~~~~yl~~~k~lGF~~IEISd- 122 (289)
.+.+|+|++|+|-+...=+| .|+ .+-+.|. .+++|. +-|. ..-++.+.+-|-+-|=+-.
T Consensus 197 ~l~~~vd~lkI~s~~~~n~~--LL~----~~a~~gkPVilk~G~~~t~~e~---------~~Ave~i~~~Gn~~i~L~er 261 (360)
T PRK12595 197 VALDYVDVIQIGARNMQNFE--LLK----AAGRVNKPVLLKRGLSATIEEF---------IYAAEYIMSQGNGQIILCER 261 (360)
T ss_pred HHHHhCCeEEECcccccCHH--HHH----HHHccCCcEEEeCCCCCCHHHH---------HHHHHHHHHCCCCCEEEECC
Confidence 44567999999976654433 333 3334565 445573 3332 2233445566776666665
Q ss_pred CcccCChh----HHHHHHHHHHH-cCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHc
Q 022982 123 GSLEIPEE----TLLRYVRLVKS-AGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEA 197 (289)
Q Consensus 123 Gti~i~~~----~r~~lI~~~~~-~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeA 197 (289)
|+..-|.. --++.|..+++ .++ | +|.-. ... .++ .+.....+...+.+
T Consensus 262 g~s~yp~~~~~~ldl~~i~~lk~~~~~---P-V~~d~-~Hs---~G~-------------------r~~~~~~a~aAva~ 314 (360)
T PRK12595 262 GIRTYEKATRNTLDISAVPILKQETHL---P-VMVDV-THS---TGR-------------------RDLLLPTAKAALAI 314 (360)
T ss_pred ccCCCCCCCCCCcCHHHHHHHHHHhCC---C-EEEeC-CCC---Ccc-------------------hhhHHHHHHHHHHc
Confidence 76654322 34567777777 222 2 44411 111 111 22345678888999
Q ss_pred cCcEEEEecc-----ccccCCCCccHHHHHHHHhcc
Q 022982 198 GADMIMIDSD-----DVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 198 GA~~ViiEar-----GI~d~~G~~r~d~v~~ii~~l 228 (289)
||+-+|||-- ...|..-.+..+.+.++++.+
T Consensus 315 GAdg~~iE~H~dp~~a~~D~~~sl~p~el~~l~~~i 350 (360)
T PRK12595 315 GADGVMAEVHPDPAVALSDSAQQMDIPEFDRFLDEL 350 (360)
T ss_pred CCCeEEEEecCCCCCCCCchhhhCCHHHHHHHHHHH
Confidence 9999999983 678999999999999998765
No 360
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=71.85 E-value=21 Score=31.80 Aligned_cols=91 Identities=23% Similarity=0.382 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhCC-ceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC-CcccC---ChhHHHHHHHHHHHc-CC
Q 022982 71 FIEEVVKRAHQHD-VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV-GSLEI---PEETLLRYVRLVKSA-GL 144 (289)
Q Consensus 71 ~l~eKI~l~~~~g-V~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISd-Gti~i---~~~~r~~lI~~~~~~-G~ 144 (289)
.+++.++.+++++ +.+..+. ...++ ...+.++|+|+|=++. |.... +...-.++++.+++. +.
T Consensus 110 ~~~~~i~~~~~~g~~~iiv~v----------~t~~e-a~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~i 178 (219)
T cd04729 110 TLAELIKRIHEEYNCLLMADI----------STLEE-ALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGI 178 (219)
T ss_pred CHHHHHHHHHHHhCCeEEEEC----------CCHHH-HHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhcCC
Confidence 6888888888888 7665541 12222 2556778999996532 32111 011112566666653 45
Q ss_pred cccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEe
Q 022982 145 KAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMID 205 (289)
Q Consensus 145 ~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiE 205 (289)
.+....|+++ .+.+++.+++||+-|++=
T Consensus 179 pvia~GGI~~---------------------------------~~~~~~~l~~GadgV~vG 206 (219)
T cd04729 179 PVIAEGRINS---------------------------------PEQAAKALELGADAVVVG 206 (219)
T ss_pred CEEEeCCCCC---------------------------------HHHHHHHHHCCCCEEEEc
Confidence 5555555521 366777888999999984
No 361
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=71.44 E-value=10 Score=40.39 Aligned_cols=63 Identities=19% Similarity=0.165 Sum_probs=47.6
Q ss_pred cChhHHHHHHHHHHhCCceec--CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCC
Q 022982 67 MPKPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGL 144 (289)
Q Consensus 67 ~p~~~l~eKI~l~~~~gV~v~--~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~ 144 (289)
-+++..++-|+.+|+.||.+. +|.=-+.|- .-|+++|++.+ +-...+++|.++|+..++.|-
T Consensus 441 p~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~-----------aIA~elGI~~v-----~A~~~PedK~~iV~~lQ~~G~ 504 (673)
T PRK14010 441 VIKDGLVERFRELREMGIETVMCTGDNELTAA-----------TIAKEAGVDRF-----VAECKPEDKINVIREEQAKGH 504 (673)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEECCCCHHHHH-----------HHHHHcCCceE-----EcCCCHHHHHHHHHHHHhCCC
Confidence 456779999999999999554 685433333 23478888743 568899999999999999875
Q ss_pred c
Q 022982 145 K 145 (289)
Q Consensus 145 ~ 145 (289)
.
T Consensus 505 ~ 505 (673)
T PRK14010 505 I 505 (673)
T ss_pred E
Confidence 4
No 362
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=71.27 E-value=12 Score=34.10 Aligned_cols=71 Identities=17% Similarity=0.298 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHhCCceecC--CcH----HHHHHHhCCc----hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHH
Q 022982 70 PFIEEVVKRAHQHDVYVST--GDW----AEHLIRNGPS----AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLV 139 (289)
Q Consensus 70 ~~l~eKI~l~~~~gV~v~~--Gtl----fE~a~~qg~~----~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~ 139 (289)
..+...++.+|++|+++.+ |+| +..++ .++. -++.-++.+++.|||.|.|.=-....+.+....+++.+
T Consensus 46 ~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~~~-~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~~~~~~~~fv~~L 124 (253)
T cd06545 46 SELNSVVNAAHAHNVKILISLAGGSPPEFTAAL-NDPAKRKALVDKIINYVVSYNLDGIDVDLEGPDVTFGDYLVFIRAL 124 (253)
T ss_pred HHHHHHHHHHHhCCCEEEEEEcCCCCCcchhhh-cCHHHHHHHHHHHHHHHHHhCCCceeEEeeccCccHhHHHHHHHHH
Confidence 4577889999999998875 543 22222 2221 35788889999999999997655444456667777777
Q ss_pred HH
Q 022982 140 KS 141 (289)
Q Consensus 140 ~~ 141 (289)
++
T Consensus 125 r~ 126 (253)
T cd06545 125 YA 126 (253)
T ss_pred HH
Confidence 76
No 363
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=71.24 E-value=26 Score=31.28 Aligned_cols=33 Identities=24% Similarity=0.462 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCC
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGL 144 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~ 144 (289)
.+++|++.++++|++.|-|+| .-+++.+++.|.
T Consensus 3 ~~~~~l~~l~~~g~dgi~v~~----------~g~~~~~k~~~~ 35 (233)
T PF01136_consen 3 ELEKYLDKLKELGVDGILVSN----------PGLLELLKELGP 35 (233)
T ss_pred HHHHHHHHHHhCCCCEEEEcC----------HHHHHHHHHhCC
Confidence 689999999999999999998 578888898844
No 364
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=71.19 E-value=58 Score=31.28 Aligned_cols=167 Identities=10% Similarity=0.144 Sum_probs=97.9
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecC----CcH----HHHH------HHhC---C----
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST----GDW----AEHL------IRNG---P---- 100 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~----Gtl----fE~a------~~qg---~---- 100 (289)
.++++|..|-. =+++-|.+-+++-+.++.-|+-|.+.+.++-. |++ ++.+ +++. |
T Consensus 5 ~~k~iL~~A~~----~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValH 80 (286)
T PRK12738 5 STKYLLQDAQA----NGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALH 80 (286)
T ss_pred cHHHHHHHHHH----CCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 34455544422 24566666666767777777777666654431 111 1110 0110 0
Q ss_pred ---chHHHHHHHHHHcCCCEEEecCCcccCChhHH----HHHHHHHHHcCCcccceeeeecCCCCCCCcccc-ccccccc
Q 022982 101 ---SAFKEYVEDCKQVGFDTIELNVGSLEIPEETL----LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDR-AFGAYVA 172 (289)
Q Consensus 101 ---~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r----~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~-~~~~~~~ 172 (289)
..=-+.+..|=+.||+.|=+..-. +|.++= .++++.++..|.-|--|+|.=-+ ++|. ....
T Consensus 81 LDHg~~~e~i~~ai~~GFtSVM~DgS~--lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg------~ed~~~~~~--- 149 (286)
T PRK12738 81 LDHHESLDDIRRKVHAGVRSAMIDGSH--FPFAENVKLVKSVVDFCHSQDCSVEAELGRLGG------VEDDMSVDA--- 149 (286)
T ss_pred CCCCCCHHHHHHHHHcCCCeEeecCCC--CCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCC------ccCCccccc---
Confidence 012346777889999999997665 444443 36777888889999999998321 2221 0000
Q ss_pred cCCCCccccccHHHHHHHHHHHHHccCcEEEEec---cccccCCCCccHHHHHHHHhccCC
Q 022982 173 RAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS---DDVCKHADSLRADIIAKVIGRLGL 230 (289)
Q Consensus 173 ~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEa---rGI~d~~G~~r~d~v~~ii~~l~~ 230 (289)
- .....||++..+.++ +-|+|.+=+== -|+|...-+++-|.+++|-+.++.
T Consensus 150 ---~-~~~~T~peea~~Fv~---~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~~v 203 (286)
T PRK12738 150 ---E-SAFLTDPQEAKRFVE---LTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDV 203 (286)
T ss_pred ---c-hhcCCCHHHHHHHHH---HhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHhCC
Confidence 0 000115766666655 34888765532 399988889999999999887653
No 365
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=71.14 E-value=18 Score=34.93 Aligned_cols=118 Identities=17% Similarity=0.157 Sum_probs=77.8
Q ss_pred eeEecCCCCCCCchhHHHHHHHhhcccccEEEecCcccc-ccChhHHHHHHHHHHhCCc-eecCC--cHHHHHHH-hC--
Q 022982 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHS-LMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIR-NG-- 99 (289)
Q Consensus 27 T~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~-l~p~~~l~eKI~l~~~~gV-~v~~G--tlfE~a~~-qg-- 99 (289)
|..++=|=+..-.+..++++++....|.++- .+.-.+. .-|...=.++++.++++|| .++.| ++=+..+. -|
T Consensus 54 ~i~~GGGtPs~l~~~~l~~ll~~i~~~~~~~-~~~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~lgR~ 132 (360)
T TIGR00539 54 SIFIGGGTPNTLSVEAFERLFESIYQHASLS-DDCEITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLLFLGRQ 132 (360)
T ss_pred EEEeCCCchhcCCHHHHHHHHHHHHHhCCCC-CCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHHHhCCC
Confidence 6666666443226789999999887776431 1111222 3344455789999999999 77777 56443332 12
Q ss_pred --CchHHHHHHHHHHcCCCEE--EecCCcccCChhHHHHHHHHHHHcCCc
Q 022982 100 --PSAFKEYVEDCKQVGFDTI--ELNVGSLEIPEETLLRYVRLVKSAGLK 145 (289)
Q Consensus 100 --~~~~~~yl~~~k~lGF~~I--EISdGti~i~~~~r~~lI~~~~~~G~~ 145 (289)
.+.+.+-++.+++.||+.| -+.-|.-.-+.++..+.++.+.+.|..
T Consensus 133 ~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~~~l~~~~~l~~~ 182 (360)
T TIGR00539 133 HSAKNIAPAIETALKSGIENISLDLMYGLPLQTLNSLKEELKLAKELPIN 182 (360)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCCHHHHHHHHHHHHccCCC
Confidence 1345556778889999855 446776677788888889999887654
No 366
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=70.99 E-value=25 Score=34.64 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=21.5
Q ss_pred cHHHHHHHHHHHHHccCcEEEEecc
Q 022982 183 DVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
++++.++.++..-++|+|+|-|=++
T Consensus 250 ~~e~~~~~~~~l~~~gvD~l~vs~g 274 (382)
T cd02931 250 DLEEGLKAAKILEEAGYDALDVDAG 274 (382)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCC
Confidence 6888899999888999999988654
No 367
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=70.98 E-value=85 Score=30.82 Aligned_cols=114 Identities=17% Similarity=0.309 Sum_probs=70.7
Q ss_pred ccChhHHHHHHHHHHhCCc-eec-CCcHHHHHHHhCCchHHHHHHHHHHc-CCCEEEe-cCCcccCChhHHHHHHHHHHH
Q 022982 66 LMPKPFIEEVVKRAHQHDV-YVS-TGDWAEHLIRNGPSAFKEYVEDCKQV-GFDTIEL-NVGSLEIPEETLLRYVRLVKS 141 (289)
Q Consensus 66 l~p~~~l~eKI~l~~~~gV-~v~-~GtlfE~a~~qg~~~~~~yl~~~k~l-GF~~IEI-SdGti~i~~~~r~~lI~~~~~ 141 (289)
+++.+.+.+.++.+.+.|| .+. +|| |-.+.. .+.+.++.++++ |+..|-| +||+. ++ +.++.+++
T Consensus 89 ~ls~eei~~~i~~~~~~Gv~~I~~tGG--EPllr~---dl~eli~~l~~~~gi~~i~itTNG~l-L~-----~~~~~L~~ 157 (373)
T PLN02951 89 LLSQDEIVRLAGLFVAAGVDKIRLTGG--EPTLRK---DIEDICLQLSSLKGLKTLAMTTNGIT-LS-----RKLPRLKE 157 (373)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEECC--CCcchh---hHHHHHHHHHhcCCCceEEEeeCcch-HH-----HHHHHHHh
Confidence 4556778889999999998 333 464 444444 588999999998 9976654 67876 22 12456677
Q ss_pred cCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEec
Q 022982 142 AGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 142 ~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEa 206 (289)
.|+. .+.+.-... +...+ ..++ +..+.+..++.++..+++|-..|.|..
T Consensus 158 aGld---~VnISLDsl-----~~e~~-~~it-------r~~~~~~vl~~I~~a~~~G~~~vkin~ 206 (373)
T PLN02951 158 AGLT---SLNISLDTL-----VPAKF-EFLT-------RRKGHDRVLESIDTAIELGYNPVKVNC 206 (373)
T ss_pred CCCC---eEEEeeccC-----CHHHH-HHHh-------cCCCHHHHHHHHHHHHHcCCCcEEEEE
Confidence 8876 344422110 00011 0111 112357889999999999976666654
No 368
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=70.91 E-value=20 Score=34.62 Aligned_cols=56 Identities=20% Similarity=0.217 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHhC-CceecCC---cHHHHHHHhCC--chHHHHHHHHHHcC-CCEEEecCCccc
Q 022982 70 PFIEEVVKRAHQH-DVYVSTG---DWAEHLIRNGP--SAFKEYVEDCKQVG-FDTIELNVGSLE 126 (289)
Q Consensus 70 ~~l~eKI~l~~~~-gV~v~~G---tlfE~a~~qg~--~~~~~yl~~~k~lG-F~~IEISdGti~ 126 (289)
..+.+.++-.++. |..+.-| ++.|.. ..|. +..-++.+.+.+.| +|.|+||.|+..
T Consensus 192 r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~-~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~ 254 (343)
T cd04734 192 RFLLEVLAAVRAAVGPDFIVGIRISGDEDT-EGGLSPDEALEIAARLAAEGLIDYVNVSAGSYY 254 (343)
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEeehhhcc-CCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCC
Confidence 6777888877775 4332223 222321 1111 12335556666778 999999998764
No 369
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=70.53 E-value=8.6 Score=39.10 Aligned_cols=82 Identities=16% Similarity=0.212 Sum_probs=54.3
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCC----chHHHHHHHHHHcCCCEEEecCCcccCCh
Q 022982 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGP----SAFKEYVEDCKQVGFDTIELNVGSLEIPE 129 (289)
Q Consensus 54 ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~----~~~~~yl~~~k~lGF~~IEISdGti~i~~ 129 (289)
||.+.+=- +|-+..+++.-|+.+++||-.+-. + +++.-.| +.+-++.++..++|+|.|=|-|=+--+++
T Consensus 112 idvfRiFD---AlND~RNl~~ai~a~kk~G~h~q~-~---i~YT~sPvHt~e~yv~~akel~~~g~DSIciKDmaGlltP 184 (472)
T COG5016 112 IDVFRIFD---ALNDVRNLKTAIKAAKKHGAHVQG-T---ISYTTSPVHTLEYYVELAKELLEMGVDSICIKDMAGLLTP 184 (472)
T ss_pred CcEEEech---hccchhHHHHHHHHHHhcCceeEE-E---EEeccCCcccHHHHHHHHHHHHHcCCCEEEeecccccCCh
Confidence 55554421 455566677777777777753211 0 1111111 23444555666789999999999999999
Q ss_pred hHHHHHHHHHHHc
Q 022982 130 ETLLRYVRLVKSA 142 (289)
Q Consensus 130 ~~r~~lI~~~~~~ 142 (289)
..--++|+.+|+.
T Consensus 185 ~~ayelVk~iK~~ 197 (472)
T COG5016 185 YEAYELVKAIKKE 197 (472)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999993
No 370
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=70.49 E-value=29 Score=32.27 Aligned_cols=137 Identities=12% Similarity=0.103 Sum_probs=83.4
Q ss_pred HHcCCCEEEecCCc----------ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 022982 111 KQVGFDTIELNVGS----------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (289)
Q Consensus 111 k~lGF~~IEISdGt----------i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 180 (289)
.+.||++|=+|+.. ..++.++.+..++.+.+. ..-.| +-+ ..+.|..
T Consensus 29 e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~-~~~~p-via---D~~~G~g------------------ 85 (240)
T cd06556 29 ADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRG-APLAL-IVA---DLPFGAY------------------ 85 (240)
T ss_pred HHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhh-CCCCC-EEE---eCCCCCC------------------
Confidence 45588888888743 367888888888887762 11111 111 1111111
Q ss_pred cccHHHHHHHHHHHHHccCcEEEEecc---------------------ccc----------cCCCCccHHHHHHHH----
Q 022982 181 VEDVDLLIRRAERCLEAGADMIMIDSD---------------------DVC----------KHADSLRADIIAKVI---- 225 (289)
Q Consensus 181 ~~~~~~~I~~~~~dLeAGA~~ViiEar---------------------GI~----------d~~G~~r~d~v~~ii---- 225 (289)
.++++.++.+++.++|||+-|-||.- |.+ +..|.- .+.+++++
T Consensus 86 -~~~~~~~~~~~~l~~aGa~gv~iED~~~~~~~i~ai~~a~i~ViaRtd~~pq~~~~~gg~~~~~~~-~~~~~~ai~Ra~ 163 (240)
T cd06556 86 -GAPTAAFELAKTFMRAGAAGVKIEGGEWHIETLQMLTAAAVPVIAHTGLTPQSVNTSGGDEGQYRG-DEAGEQLIADAL 163 (240)
T ss_pred -cCHHHHHHHHHHHHHcCCcEEEEcCcHHHHHHHHHHHHcCCeEEEEeCCchhhhhccCCceeeccC-HHHHHHHHHHHH
Confidence 13678899999999999999999982 221 111221 12233333
Q ss_pred --hccCCCceEEecCCchhHHHHHHHhCCCcccc-cC---CCCchhhhhhhcc
Q 022982 226 --GRLGLEKTMFEATNPRTSEWFIRRYGPKVNLF-VD---HSQVMDLECLRGR 272 (289)
Q Consensus 226 --~~l~~eklifEAP~k~qQ~~~I~~fG~~VNLg-I~---~~eVl~LE~LR~g 272 (289)
...|.+-|..|++..++-..+-+...-=||.. -+ -.||+-+.-+.+=
T Consensus 164 ay~~AGAd~i~~e~~~~e~~~~i~~~~~~P~~~~gag~~~dgq~lv~~d~lg~ 216 (240)
T cd06556 164 AYAPAGADLIVMECVPVELAKQITEALAIPLAGIGAGSGTDGQFLVLADAFGI 216 (240)
T ss_pred HHHHcCCCEEEEcCCCHHHHHHHHHhCCCCEEEEecCcCCCceEEeHHhhhcc
Confidence 56789999999997777777777765445542 22 2466766666543
No 371
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=70.25 E-value=42 Score=29.81 Aligned_cols=102 Identities=17% Similarity=0.298 Sum_probs=59.4
Q ss_pred CCceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecC----C-----cHHHH
Q 022982 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST----G-----DWAEH 94 (289)
Q Consensus 24 ~GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~----G-----tlfE~ 94 (289)
.++....+=|. + ....++.+++. | .| +.-.||+.+.+++.+++..+.+.+. +.++- | +|-+.
T Consensus 73 ~~~pv~~~GGI--~-~~ed~~~~~~~-G--a~--~vilg~~~l~~~~~l~ei~~~~~~~-i~vsid~k~~~v~~~g~~~~ 143 (233)
T PRK00748 73 VDIPVQVGGGI--R-SLETVEALLDA-G--VS--RVIIGTAAVKNPELVKEACKKFPGK-IVVGLDARDGKVATDGWLET 143 (233)
T ss_pred CCCCEEEcCCc--C-CHHHHHHHHHc-C--CC--EEEECchHHhCHHHHHHHHHHhCCC-ceeeeeccCCEEEEccCeec
Confidence 35556665555 2 44555556664 3 33 4568899998888888887776432 43321 1 23221
Q ss_pred HHHhCCchHHHHHHHHHHcCCCEEEecC----CcccCChhHHHHHHHHHHH
Q 022982 95 LIRNGPSAFKEYVEDCKQVGFDTIELNV----GSLEIPEETLLRYVRLVKS 141 (289)
Q Consensus 95 a~~qg~~~~~~yl~~~k~lGF~~IEISd----Gti~i~~~~r~~lI~~~~~ 141 (289)
.. ....++.+.+.++|++.|=+-+ |+..=+ -.++|+++++
T Consensus 144 --~~--~~~~e~~~~~~~~g~~~ii~~~~~~~g~~~G~---d~~~i~~l~~ 187 (233)
T PRK00748 144 --SG--VTAEDLAKRFEDAGVKAIIYTDISRDGTLSGP---NVEATRELAA 187 (233)
T ss_pred --CC--CCHHHHHHHHHhcCCCEEEEeeecCcCCcCCC---CHHHHHHHHH
Confidence 12 2567899999999999665542 222211 1366666666
No 372
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=70.18 E-value=10 Score=38.17 Aligned_cols=67 Identities=19% Similarity=0.325 Sum_probs=42.5
Q ss_pred HHHHHHcCCCEEEecCC--cccCC---------hhH-HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccC
Q 022982 107 VEDCKQVGFDTIELNVG--SLEIP---------EET-LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (289)
Q Consensus 107 l~~~k~lGF~~IEISdG--ti~i~---------~~~-r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 174 (289)
.+.+.+.|+|+|-|+.| ++... .-+ -.++.+.+++.|..++++=|++.
T Consensus 279 a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~-------------------- 338 (450)
T TIGR01302 279 AKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRY-------------------- 338 (450)
T ss_pred HHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCC--------------------
Confidence 34567799999998754 33222 111 12344445566777777666643
Q ss_pred CCCccccccHHHHHHHHHHHHHccCcEEEEec
Q 022982 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 175 ~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEa 206 (289)
-..+.+.|++||+.||+=+
T Consensus 339 -------------~~di~kAla~GA~~V~~G~ 357 (450)
T TIGR01302 339 -------------SGDIVKALAAGADAVMLGS 357 (450)
T ss_pred -------------HHHHHHHHHcCCCEEEECc
Confidence 2445678999999999965
No 373
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=69.96 E-value=38 Score=38.45 Aligned_cols=103 Identities=18% Similarity=0.130 Sum_probs=74.7
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 180 (289)
+-++.|++.+.+-|+|.+-|=|..=+++.=. ..|+.+++.|..+-.-+-. +|.--|+ ...
T Consensus 625 ~vv~~f~~~~~~~GidifrifD~lN~~~n~~--~~~~~~~~~g~~~~~~i~y------t~~~~d~--------~~~---- 684 (1143)
T TIGR01235 625 NVVKYFVKQAAQGGIDIFRVFDSLNWVENMR--VGMDAVAEAGKVVEAAICY------TGDILDP--------ARP---- 684 (1143)
T ss_pred HHHHHHHHHHHHcCCCEEEECccCcCHHHHH--HHHHHHHHcCCEEEEEEEE------eccCCCc--------CCC----
Confidence 3589999999999999999999887776644 5899999999865443332 1101111 100
Q ss_pred cccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 022982 181 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 181 ~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l 228 (289)
.-|++.+++.++.-.++||+.| .|.|-.|-.+...+.++++.+
T Consensus 685 ~~~l~y~~~~ak~l~~~Gad~I-----~ikDt~Gll~P~~~~~Lv~~l 727 (1143)
T TIGR01235 685 KYDLKYYTNLAVELEKAGAHIL-----GIKDMAGLLKPAAAKLLIKAL 727 (1143)
T ss_pred CCCHHHHHHHHHHHHHcCCCEE-----EECCCcCCcCHHHHHHHHHHH
Confidence 1258888999999999999866 467888888888777777554
No 374
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=69.96 E-value=90 Score=28.65 Aligned_cols=109 Identities=17% Similarity=0.165 Sum_probs=61.9
Q ss_pred CceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceec----CCc-----HHHHH
Q 022982 25 GVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS----TGD-----WAEHL 95 (289)
Q Consensus 25 GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~----~Gt-----lfE~a 95 (289)
.++...+=|. + ....++++++. | .|. +-.||+++.+++.+++..+.+-+-.|.++ .|. |.+++
T Consensus 74 ~~pv~~~GGi--~-s~~d~~~~~~~-G--a~~--vivgt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~ 145 (254)
T TIGR00735 74 FIPLTVGGGI--K-SIEDVDKLLRA-G--ADK--VSINTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVY 145 (254)
T ss_pred CCCEEEECCC--C-CHHHHHHHHHc-C--CCE--EEEChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEE
Confidence 3445555555 2 45666667774 4 343 46689999999988886655521123332 221 11211
Q ss_pred HH----hCCchHHHHHHHHHHcCCCEEEecCCccc--CChhHHHHHHHHHHHc
Q 022982 96 IR----NGPSAFKEYVEDCKQVGFDTIELNVGSLE--IPEETLLRYVRLVKSA 142 (289)
Q Consensus 96 ~~----qg~~~~~~yl~~~k~lGF~~IEISdGti~--i~~~~r~~lI~~~~~~ 142 (289)
.. .......++.+.+.+.|++.|.+++-.-+ .+--+ .++++++++.
T Consensus 146 i~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g~~~g~~-~~~~~~i~~~ 197 (254)
T TIGR00735 146 IYGGRESTGLDAVEWAKEVEKLGAGEILLTSMDKDGTKSGYD-LELTKAVSEA 197 (254)
T ss_pred EeCCcccCCCCHHHHHHHHHHcCCCEEEEeCcCcccCCCCCC-HHHHHHHHHh
Confidence 11 11236789999999999999999652221 01111 3566766663
No 375
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=69.81 E-value=23 Score=33.73 Aligned_cols=105 Identities=22% Similarity=0.219 Sum_probs=60.7
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcc-------------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccc
Q 022982 100 PSAFKEYVEDCKQVGFDTIELNVGSL-------------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRA 166 (289)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGti-------------~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~ 166 (289)
|+.+.+-.+.+.++|++.|.|+=|+= --.++.-.++++.+++.-= --+.+|--. |
T Consensus 65 ~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~---~pvsvKiR~---g------ 132 (309)
T PF01207_consen 65 PEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVP---IPVSVKIRL---G------ 132 (309)
T ss_dssp HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-S---SEEEEEEES---E------
T ss_pred HHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccc---cceEEeccc---c------
Confidence 44555556677889999999997742 3345666678888876411 124444321 1
Q ss_pred cccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEecc-ccccCCCCccHHHHHHHHhccC
Q 022982 167 FGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-DVCKHADSLRADIIAKVIGRLG 229 (289)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar-GI~d~~G~~r~d~v~~ii~~l~ 229 (289)
| -.+.++.++.++...++|++.|+|-+| .--.-.|..+.+.+.++.+.++
T Consensus 133 ---------~----~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ 183 (309)
T PF01207_consen 133 ---------W----DDSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALP 183 (309)
T ss_dssp ---------C----T--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-T
T ss_pred ---------c----ccchhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhccc
Confidence 1 012566789999999999999999999 1222234677788887777666
No 376
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=69.73 E-value=8.7 Score=36.66 Aligned_cols=109 Identities=17% Similarity=0.194 Sum_probs=61.1
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcc------------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccc
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVGSL------------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFG 168 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti------------~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~ 168 (289)
+..++|++.|.++||++|-|.+|=- ..+..+..++|+.+++.|-.|.==..- +.+ .....
T Consensus 32 ~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~-----~~~-~~~~~-- 103 (273)
T PF10566_consen 32 ETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHS-----ETG-GNVAN-- 103 (273)
T ss_dssp HHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEEC-----CHT-TBHHH--
T ss_pred HHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeC-----Ccc-hhhHh--
Confidence 4689999999999999999999875 578889999999999987543221111 100 00000
Q ss_pred cccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceE
Q 022982 169 AYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 234 (289)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~ekli 234 (289)
.+ .++-+..+..=+.|+.=|=| |.++.++......-++|++.----+||
T Consensus 104 ------------~~--~~~~~~f~~~~~~Gv~GvKi---dF~~~d~Q~~v~~y~~i~~~AA~~~Lm 152 (273)
T PF10566_consen 104 ------------LE--KQLDEAFKLYAKWGVKGVKI---DFMDRDDQEMVNWYEDILEDAAEYKLM 152 (273)
T ss_dssp ------------HH--CCHHHHHHHHHHCTEEEEEE---E--SSTSHHHHHHHHHHHHHHHHTT-E
T ss_pred ------------HH--HHHHHHHHHHHHcCCCEEee---CcCCCCCHHHHHHHHHHHHHHHHcCcE
Confidence 00 01123334444667665555 456667766666666666544334444
No 377
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=69.67 E-value=31 Score=32.10 Aligned_cols=156 Identities=13% Similarity=0.106 Sum_probs=89.3
Q ss_pred CCCCCceeEec--CCCCCC----CchhHHHHHHHhhcccccEE-EecCccccccChhHHHHHHHHHHhCCceec----C-
Q 022982 21 PRRFGVTEMRS--PHYTLS----SSHNVLEDIFESMGQFVDGL-KFSGGSHSLMPKPFIEEVVKRAHQHDVYVS----T- 88 (289)
Q Consensus 21 PR~~GlT~V~D--kGl~~~----~g~~~~~DlLe~ag~yID~l-Kfg~GTs~l~p~~~l~eKI~l~~~~gV~v~----~- 88 (289)
++..++.+.++ .++... .-...+++.++.-.+-||+. ++|.-...- -.+.+++-.+.||++|+++- +
T Consensus 71 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A~~~Gad~v~~~~~~g~~~~~~-~~~~~~~v~~~~~~~g~pl~vi~~~~ 149 (267)
T PRK07226 71 GRDVGLIVHLSASTSLSPDPNDKVLVGTVEEAIKLGADAVSVHVNVGSETEAE-MLEDLGEVAEECEEWGMPLLAMMYPR 149 (267)
T ss_pred CCCCcEEEEEcCCCCCCCCCCcceeeecHHHHHHcCCCEEEEEEecCChhHHH-HHHHHHHHHHHHHHcCCcEEEEEecC
Confidence 45667766666 233111 01345788888888878875 555322111 13357888899999998532 2
Q ss_pred CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccc
Q 022982 89 GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFG 168 (289)
Q Consensus 89 GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~ 168 (289)
|-=+|-.+. ++.+.+..+.|.++|-|+|-.|-. -+ .++++++.+.. .+.++-.+ |.+.
T Consensus 150 g~~~e~~~~--~~~i~~a~~~a~e~GAD~vKt~~~---~~----~~~l~~~~~~~-----~ipV~a~G---Gi~~----- 207 (267)
T PRK07226 150 GPGIKNEYD--PEVVAHAARVAAELGADIVKTNYT---GD----PESFREVVEGC-----PVPVVIAG---GPKT----- 207 (267)
T ss_pred CCccCCCcc--HHHHHHHHHHHHHHCCCEEeeCCC---CC----HHHHHHHHHhC-----CCCEEEEe---CCCC-----
Confidence 211233321 124555578889999999999822 11 24555555421 12332211 0111
Q ss_pred cccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccCC
Q 022982 169 AYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHA 213 (289)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~ 213 (289)
+|.++..+.++..++|||+- +.=+|.|+.+.
T Consensus 208 -------------~~~~~~l~~v~~~~~aGA~G-is~gr~i~~~~ 238 (267)
T PRK07226 208 -------------DTDREFLEMVRDAMEAGAAG-VAVGRNVFQHE 238 (267)
T ss_pred -------------CCHHHHHHHHHHHHHcCCcE-EehhhhhhcCC
Confidence 14677888999999999993 34456677654
No 378
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=69.65 E-value=17 Score=34.55 Aligned_cols=138 Identities=20% Similarity=0.336 Sum_probs=78.9
Q ss_pred HHHHHHHhhcccccEEEecC-------ccccccChhHHHHHHHHHHh------CCc---eecCCcH---HHHHHHhCCch
Q 022982 42 VLEDIFESMGQFVDGLKFSG-------GSHSLMPKPFIEEVVKRAHQ------HDV---YVSTGDW---AEHLIRNGPSA 102 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~-------GTs~l~p~~~l~eKI~l~~~------~gV---~v~~Gtl---fE~a~~qg~~~ 102 (289)
.+.-+++.+| ||++=.|= |-..-.|- .+.+.|-.++. +-. ..+.|++ -|.|+.
T Consensus 27 ~~A~~~d~ag--vD~iLVGDSlgmv~~G~~sT~~v-tld~mi~h~~aV~Rga~~~~vv~DmPf~sy~~s~e~av~----- 98 (261)
T PF02548_consen 27 PSARIADEAG--VDIILVGDSLGMVVLGYDSTLPV-TLDEMIYHTKAVRRGAPNAFVVADMPFGSYQASPEQAVR----- 98 (261)
T ss_dssp HHHHHHHHTT---SEEEE-TTHHHHTT--SSSTT---HHHHHHHHHHHHHH-TSSEEEEE--TTSSTSSHHHHHH-----
T ss_pred HHHHHHHHcC--CCEEEeCCcHHHheeCCCCCcCc-CHHHHHHHHHHHHhcCCCceEEecCCcccccCCHHHHHH-----
Confidence 4566777776 88887663 22222221 25555544332 111 1222544 444443
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 022982 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (289)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 182 (289)
.-.+..|+-|.|+|-+.-|. +....|+.+.++|.-|.-.+|..-... ..+|.+... -...+
T Consensus 99 --nA~rl~ke~GadaVKlEGg~------~~~~~i~~l~~~GIPV~gHiGLtPQ~~-------~~~GGyr~q----Gk~~~ 159 (261)
T PF02548_consen 99 --NAGRLMKEAGADAVKLEGGA------EIAETIKALVDAGIPVMGHIGLTPQSV-------HQLGGYRVQ----GKTAE 159 (261)
T ss_dssp --HHHHHHHTTT-SEEEEEBSG------GGHHHHHHHHHTT--EEEEEES-GGGH-------HHHTSS--C----STSHH
T ss_pred --HHHHHHHhcCCCEEEeccch------hHHHHHHHHHHCCCcEEEEecCchhhe-------eccCCceEE----ecCHH
Confidence 33566788899999999886 457899999999999999999854321 011111100 00123
Q ss_pred cHHHHHHHHHHHHHccCcEEEEec
Q 022982 183 DVDLLIRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAGA~~ViiEa 206 (289)
+..++++.+++-=+|||..|.+|.
T Consensus 160 ~a~~l~~~A~ale~AGaf~ivlE~ 183 (261)
T PF02548_consen 160 EAEKLLEDAKALEEAGAFAIVLEC 183 (261)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEEES
T ss_pred HHHHHHHHHHHHHHcCccEEeeec
Confidence 578999999999999999999998
No 379
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=69.61 E-value=23 Score=33.14 Aligned_cols=117 Identities=23% Similarity=0.342 Sum_probs=77.6
Q ss_pred HHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEE-
Q 022982 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIE- 119 (289)
Q Consensus 43 ~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~G--tlfE~a~~qg~~~~~~yl~~~k~lGF~~IE- 119 (289)
++|+=+.+-.=+|++=|- +|.---|...+.+.+...|.+|...+.- |+=|.. .|.++|||.|=
T Consensus 88 lkeVd~L~~~Ga~IIA~D-aT~R~RP~~~~~~~i~~~k~~~~l~MAD~St~ee~l-------------~a~~~G~D~IGT 153 (229)
T COG3010 88 LKEVDALAEAGADIIAFD-ATDRPRPDGDLEELIARIKYPGQLAMADCSTFEEGL-------------NAHKLGFDIIGT 153 (229)
T ss_pred HHHHHHHHHCCCcEEEee-cccCCCCcchHHHHHHHhhcCCcEEEeccCCHHHHH-------------HHHHcCCcEEec
Confidence 444444444445565554 4555555446888888888888877763 454443 34679999983
Q ss_pred -ecC--CcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHH
Q 022982 120 -LNV--GSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLE 196 (289)
Q Consensus 120 -ISd--Gti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLe 196 (289)
+|- +.-.-|.+.-..+++.+.+.|..|+-|=... + -+++++.++
T Consensus 154 TLsGYT~~~~~~~~pDf~lvk~l~~~~~~vIAEGr~~------------------t---------------P~~Ak~a~~ 200 (229)
T COG3010 154 TLSGYTGYTEKPTEPDFQLVKQLSDAGCRVIAEGRYN------------------T---------------PEQAKKAIE 200 (229)
T ss_pred ccccccCCCCCCCCCcHHHHHHHHhCCCeEEeeCCCC------------------C---------------HHHHHHHHH
Confidence 221 1112455555689999999999988875551 1 267889999
Q ss_pred ccCcEEEEec
Q 022982 197 AGADMIMIDS 206 (289)
Q Consensus 197 AGA~~ViiEa 206 (289)
.||+-|+|=+
T Consensus 201 ~Ga~aVvVGs 210 (229)
T COG3010 201 IGADAVVVGS 210 (229)
T ss_pred hCCeEEEECc
Confidence 9999999965
No 380
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=69.53 E-value=77 Score=30.95 Aligned_cols=76 Identities=12% Similarity=0.036 Sum_probs=47.6
Q ss_pred chhHHHHHHHhhcccccEEEecCccccccChhH-----HHHHHHHHHhC-CceecC-C-cHHHHHHHhCCchHHHHHHHH
Q 022982 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPF-----IEEVVKRAHQH-DVYVST-G-DWAEHLIRNGPSAFKEYVEDC 110 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~-----l~eKI~l~~~~-gV~v~~-G-tlfE~a~~qg~~~~~~yl~~~ 110 (289)
++..+...++..+..-.-+.++.+.-.++|+.. +.+.|+-.++. +++|.- + + .+ .-.+..+.+
T Consensus 136 ~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g-------~g--~s~~~a~~l 206 (352)
T PRK05437 136 GVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPVPVIVKEVG-------FG--ISKETAKRL 206 (352)
T ss_pred CHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCCCEEEEeCC-------CC--CcHHHHHHH
Confidence 456777777777664444455544466665422 33667766665 887774 1 1 12 224666778
Q ss_pred HHcCCCEEEecCC
Q 022982 111 KQVGFDTIELNVG 123 (289)
Q Consensus 111 k~lGF~~IEISdG 123 (289)
.+.|.|+|.||..
T Consensus 207 ~~~Gvd~I~Vsg~ 219 (352)
T PRK05437 207 ADAGVKAIDVAGA 219 (352)
T ss_pred HHcCCCEEEECCC
Confidence 8899999999883
No 381
>PLN02428 lipoic acid synthase
Probab=69.52 E-value=30 Score=34.17 Aligned_cols=75 Identities=19% Similarity=0.266 Sum_probs=47.1
Q ss_pred HHHHHHHHHcCCCEEEecCCc----------ccCChhHHHHHHHHHHHc--CCcccceeeeecCCCCCCCcccccccccc
Q 022982 104 KEYVEDCKQVGFDTIELNVGS----------LEIPEETLLRYVRLVKSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (289)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGt----------i~i~~~~r~~lI~~~~~~--G~~v~~E~g~k~~~~evg~~~d~~~~~~~ 171 (289)
++-++..++.|++.+=.+--| -..+.++++++++.+++. |+.+++=+=+ +..|
T Consensus 195 ~elL~~L~eAG~d~i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~Mv--GLGE------------- 259 (349)
T PLN02428 195 LGAVETVATSGLDVFAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIML--GLGE------------- 259 (349)
T ss_pred HHHHHHHHHcCCCEEccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEE--ecCC-------------
Confidence 456666666777665444333 124567778888888887 7776653322 2211
Q ss_pred ccCCCCccccccHHHHHHHHHHHHHccCcEEEE
Q 022982 172 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 204 (289)
Q Consensus 172 ~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~Vii 204 (289)
+.+++++.++.-.+.|.+.|.+
T Consensus 260 -----------T~Edv~e~l~~Lrelgvd~vti 281 (349)
T PLN02428 260 -----------TDEEVVQTMEDLRAAGVDVVTF 281 (349)
T ss_pred -----------CHHHHHHHHHHHHHcCCCEEee
Confidence 3667777777777888888766
No 382
>PRK09061 D-glutamate deacylase; Validated
Probab=69.36 E-value=30 Score=35.34 Aligned_cols=106 Identities=14% Similarity=0.105 Sum_probs=69.5
Q ss_pred HHHHHH---hhcccccEEEecCccccccChhHHHHHHHHHHhCCceecC----CcHHH-HHHHhCCchHHHHHHHHHHcC
Q 022982 43 LEDIFE---SMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST----GDWAE-HLIRNGPSAFKEYVEDCKQVG 114 (289)
Q Consensus 43 ~~DlLe---~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~----GtlfE-~a~~qg~~~~~~yl~~~k~lG 114 (289)
++++++ .+| .+++|.+-+-..-.+.+.|.+-.+.+++||..+.. .++.. .... ..+++.++.+++.|
T Consensus 171 m~~ll~~al~~G--a~gis~~~~y~p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~~~~~~~e~---~av~~~i~lA~~~G 245 (509)
T PRK09061 171 ILELLEQGLDEG--ALGIGIGAGYAPGTGHKEYLELARLAARAGVPTYTHVRYLSNVDPRSSV---DAYQELIAAAAETG 245 (509)
T ss_pred HHHHHHHHHHCC--CCEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEEEecCcccCCchhHH---HHHHHHHHHHHHhC
Confidence 445554 234 58888753222234777899999999999998754 12311 1111 15788999999999
Q ss_pred CCEEEecCCcc--cCChhHHHHHHHHHHHcCCcccceeeeec
Q 022982 115 FDTIELNVGSL--EIPEETLLRYVRLVKSAGLKAKPKFAVMF 154 (289)
Q Consensus 115 F~~IEISdGti--~i~~~~r~~lI~~~~~~G~~v~~E~g~k~ 154 (289)
+. +-||-=+. ..+.++-+++|+++++.|..|..|+-.-.
T Consensus 246 ~r-v~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~P~~ 286 (509)
T PRK09061 246 AH-MHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAYPYG 286 (509)
T ss_pred CC-EEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 75 44442111 12446668999999999999999986533
No 383
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=69.33 E-value=39 Score=32.06 Aligned_cols=111 Identities=18% Similarity=0.232 Sum_probs=84.5
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHH
Q 022982 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (289)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (289)
+.+++..|-|+|=+=-. -|++++..++.+.+++.||.|+.|++-
T Consensus 122 I~~Ar~~GADavLLI~~--~L~~~~l~el~~~A~~LGm~~LVEVh~---------------------------------- 165 (254)
T COG0134 122 IYEARAAGADAVLLIVA--ALDDEQLEELVDRAHELGMEVLVEVHN---------------------------------- 165 (254)
T ss_pred HHHHHHcCcccHHHHHH--hcCHHHHHHHHHHHHHcCCeeEEEECC----------------------------------
Confidence 67888999988754332 467888899999999999999999876
Q ss_pred HHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCce-EEecCCc-hhHHHHHHHhCCCccc
Q 022982 187 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKT-MFEATNP-RTSEWFIRRYGPKVNL 256 (289)
Q Consensus 187 ~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~ekl-ifEAP~k-~qQ~~~I~~fG~~VNL 256 (289)
.+.+++.+++||..|=|.-|.+.+=. +.-+.-.+++..+|-+.+ |=|.=-. ..+...+.++|.|-=|
T Consensus 166 -~eEl~rAl~~ga~iIGINnRdL~tf~--vdl~~t~~la~~~p~~~~~IsESGI~~~~dv~~l~~~ga~a~L 234 (254)
T COG0134 166 -EEELERALKLGAKIIGINNRDLTTLE--VDLETTEKLAPLIPKDVILISESGISTPEDVRRLAKAGADAFL 234 (254)
T ss_pred -HHHHHHHHhCCCCEEEEeCCCcchhe--ecHHHHHHHHhhCCCCcEEEecCCCCCHHHHHHHHHcCCCEEE
Confidence 46788899999999999999774432 233446778888886554 4566533 6788888888887666
No 384
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=69.33 E-value=40 Score=31.53 Aligned_cols=71 Identities=24% Similarity=0.219 Sum_probs=46.0
Q ss_pred HHHHHHHc--CCCEEEecCCccc---------CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccC
Q 022982 106 YVEDCKQV--GFDTIELNVGSLE---------IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (289)
Q Consensus 106 yl~~~k~l--GF~~IEISdGti~---------i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 174 (289)
..+.+++. ++++||++=|+-. -..+...++++.+++.- -+| +.+|-..
T Consensus 108 ~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~--~~p-v~vKi~~------------------ 166 (300)
T TIGR01037 108 VAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKT--DVP-VFAKLSP------------------ 166 (300)
T ss_pred HHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc--CCC-EEEECCC------------------
Confidence 33444443 3999999877543 34567788888888741 122 4554310
Q ss_pred CCCccccccHHHHHHHHHHHHHccCcEEEEe
Q 022982 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMID 205 (289)
Q Consensus 175 ~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiE 205 (289)
+.++.++.++...++|+|.|.+=
T Consensus 167 --------~~~~~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 167 --------NVTDITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred --------ChhhHHHHHHHHHHcCCCEEEEE
Confidence 24456778888889999999885
No 385
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=69.32 E-value=19 Score=32.41 Aligned_cols=93 Identities=14% Similarity=0.163 Sum_probs=63.3
Q ss_pred chhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022982 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (289)
......++++..++|+|++|+|+... .. ...+-++.+++.+.++.-- =+..+ |+-+..|.+.+.+.|+|+
T Consensus 9 ~~~~a~~i~~~~~~~v~~iKvg~~l~--~~--~g~~~i~~l~~~~~~i~~DlK~~DI-----g~tv~~~~~~~~~~gad~ 79 (216)
T cd04725 9 DEEFALALIDALGPYVCAVKVGLELF--EA--AGPEIVKELRELGFLVFLDLKLGDI-----PNTVAAAAEALLGLGADA 79 (216)
T ss_pred CHHHHHHHHHhcCCcccEEEECHHHH--Hh--cCHHHHHHHHHCCCcEEEEeecCch-----HHHHHHHHHHHHhcCCCE
Confidence 35678889999999999999997443 32 4566777777777555432 12222 224555666667789999
Q ss_pred EEecCCcccCChhHHHHHHHHHHHcC
Q 022982 118 IELNVGSLEIPEETLLRYVRLVKSAG 143 (289)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~G 143 (289)
+-|+- -...+....+++.+++.+
T Consensus 80 ~Tvh~---~~G~~~l~~~~~~~~~~~ 102 (216)
T cd04725 80 VTVHP---YGGSDMLKAALEAAEEKG 102 (216)
T ss_pred EEECC---cCCHHHHHHHHHHHhccC
Confidence 99984 455677777777777543
No 386
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=69.24 E-value=22 Score=32.98 Aligned_cols=69 Identities=17% Similarity=0.202 Sum_probs=48.8
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccc
Q 022982 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (289)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~ 183 (289)
....+.+...|||.|-|.-=--.++.++...+|+.++..|..++--+.. .|
T Consensus 23 p~~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~----------~~------------------- 73 (249)
T TIGR02311 23 PYAAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAI----------GD------------------- 73 (249)
T ss_pred cHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCC----------CC-------------------
Confidence 3567778889999998876555678888888998877766643322211 11
Q ss_pred HHHHHHHHHHHHHccCcEEEEe
Q 022982 184 VDLLIRRAERCLEAGADMIMID 205 (289)
Q Consensus 184 ~~~~I~~~~~dLeAGA~~ViiE 205 (289)
+ ..+++.|++||+-||+=
T Consensus 74 ~----~~i~~~Ld~Ga~gIivP 91 (249)
T TIGR02311 74 P----VLIKQLLDIGAQTLLVP 91 (249)
T ss_pred H----HHHHHHhCCCCCEEEec
Confidence 1 25788999999999873
No 387
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=69.23 E-value=71 Score=31.07 Aligned_cols=191 Identities=12% Similarity=0.151 Sum_probs=110.3
Q ss_pred HHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceec----CCc--HH--H---HH---HHhCCc-------
Q 022982 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS----TGD--WA--E---HL---IRNGPS------- 101 (289)
Q Consensus 43 ~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~----~Gt--lf--E---~a---~~qg~~------- 101 (289)
++++|..|-+- +++-|.+-+++-+.++.-|+-|.+.+.++. +|+ +. + .+ +.+..+
T Consensus 5 ~k~lL~~A~~~----~yaV~AfN~~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValH 80 (307)
T PRK05835 5 GNEILLKAHKE----GYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALH 80 (307)
T ss_pred HHHHHHHHHHC----CceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhCChHHHHHHHHHHHHhcCCCeEEEE
Confidence 44555444332 456777778888888888888887776543 221 10 1 11 112111
Q ss_pred ----hHHHHHHHHHHcCCCEEEecCCcccCChhHH----HHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccc
Q 022982 102 ----AFKEYVEDCKQVGFDTIELNVGSLEIPEETL----LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVAR 173 (289)
Q Consensus 102 ----~~~~yl~~~k~lGF~~IEISdGti~i~~~~r----~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~ 173 (289)
.=-+.+..|-+.||+.|=+..-. +|.++= .++++.++..|.-|--|+|.=-+ .+-+...+.. ...
T Consensus 81 LDHg~~~e~i~~ai~~GftSVM~DgS~--l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg-~ed~~~~~~~-~~~--- 153 (307)
T PRK05835 81 LDHGTTFESCEKAVKAGFTSVMIDASH--HAFEENLELTSKVVKMAHNAGVSVEAELGRLMG-IEDNISVDEK-DAV--- 153 (307)
T ss_pred CCCCCCHHHHHHHHHcCCCEEEEeCCC--CCHHHHHHHHHHHHHHHHHcCCEEEEEecccCC-ccCCcccccc-ccc---
Confidence 12456778889999999997554 444443 36778888899999999998321 1111000000 000
Q ss_pred CCCCccccccHHHHHHHHHHHHHccCcEEEEec---ccccc--CCCCccHHHHHHHHhccCCCceEEecC-CchhHHHHH
Q 022982 174 APRSTEYVEDVDLLIRRAERCLEAGADMIMIDS---DDVCK--HADSLRADIIAKVIGRLGLEKTMFEAT-NPRTSEWFI 247 (289)
Q Consensus 174 ~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEa---rGI~d--~~G~~r~d~v~~ii~~l~~eklifEAP-~k~qQ~~~I 247 (289)
.+ ||++..+.++ +-|+|..=|== -|.|. ..-+++-+.+++|-+.++.--++==+. .|+.+..=|
T Consensus 154 ------~T-dPeeA~~Fv~---~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~~iPLVLHGgSGip~e~~~~~ 223 (307)
T PRK05835 154 ------LV-NPKEAEQFVK---ESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGASAIPDDVRKSY 223 (307)
T ss_pred ------CC-CHHHHHHHHH---hhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCchHHhhhh
Confidence 12 5666665555 45888754432 28998 445799999999988776433443333 344444555
Q ss_pred HHhCCCc
Q 022982 248 RRYGPKV 254 (289)
Q Consensus 248 ~~fG~~V 254 (289)
+.||-++
T Consensus 224 ~~~g~~~ 230 (307)
T PRK05835 224 LDAGGDL 230 (307)
T ss_pred hhhcccc
Confidence 5555543
No 388
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=69.18 E-value=14 Score=40.79 Aligned_cols=69 Identities=17% Similarity=0.344 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhCCc-eecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 022982 71 FIEEVVKRAHQHDV-YVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (289)
Q Consensus 71 ~l~eKI~l~~~~gV-~v~~G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (289)
.+.+.|++|+++|+ -++|| ||+ +.| .+|-+.|.+-|+..|==+--.+++ .-+|.+....|.+.|+.|+|
T Consensus 68 ~IdeII~iAk~~gaDaIhPGYGfL----SEn----~efA~~c~eaGI~FIGP~~e~ld~-~GdKv~Ar~~A~~agvPvip 138 (1149)
T COG1038 68 SIDEIIRIAKRSGADAIHPGYGFL----SEN----PEFARACAEAGITFIGPKPEVLDM-LGDKVKARNAAIKAGVPVIP 138 (1149)
T ss_pred cHHHHHHHHHHcCCCeecCCcccc----cCC----HHHHHHHHHcCCEEeCCCHHHHHH-hccHHHHHHHHHHcCCCccC
Confidence 48999999999999 78899 864 555 689999999999988766666654 34567888899999999888
No 389
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=69.15 E-value=27 Score=34.77 Aligned_cols=116 Identities=13% Similarity=0.111 Sum_probs=77.4
Q ss_pred eeEecCCCCCCCchhHHHHHHHhhcccccEEEecC---c-cccccChhHHHHHHHHHHhCCc-eecCC--cHHHHHHH--
Q 022982 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSG---G-SHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIR-- 97 (289)
Q Consensus 27 T~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~---G-Ts~l~p~~~l~eKI~l~~~~gV-~v~~G--tlfE~a~~-- 97 (289)
|..++=|-+....+..++++++....+.. +.+ . |.-..|...-.++++.++++|+ .++-| ++-+..+.
T Consensus 94 ~i~~GGGTPs~l~~~~l~~Ll~~i~~~~~---~~~~~~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~l 170 (430)
T PRK08208 94 SFAVGGGTPTLLNAAELEKLFDSVERVLG---VDLGNIPKSVETSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHAL 170 (430)
T ss_pred EEEEcCCccccCCHHHHHHHHHHHHHhCC---CCCCCceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHh
Confidence 44455554322267889999998876654 222 1 2223455556899999999999 77778 66444332
Q ss_pred -hC--CchHHHHHHHHHHcCCCEE--EecCCcccCChhHHHHHHHHHHHcCCc
Q 022982 98 -NG--PSAFKEYVEDCKQVGFDTI--ELNVGSLEIPEETLLRYVRLVKSAGLK 145 (289)
Q Consensus 98 -qg--~~~~~~yl~~~k~lGF~~I--EISdGti~i~~~~r~~lI~~~~~~G~~ 145 (289)
++ .+.+.+-++.|++.||+.| -+--|.=.-+.++..+-++.+.+.|..
T Consensus 171 ~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt~e~~~~~l~~~~~l~~~ 223 (430)
T PRK08208 171 HRPQKRADVHQALEWIRAAGFPILNIDLIYGIPGQTHASWMESLDQALVYRPE 223 (430)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhCCCC
Confidence 22 1246667788899999875 556666677778888889998887755
No 390
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=69.05 E-value=71 Score=30.60 Aligned_cols=77 Identities=31% Similarity=0.377 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC-------Ch-hHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEI-------PE-ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVAR 173 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i-------~~-~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~ 173 (289)
.+.++.+.+++.|+|+|||+=++-.- .. +...++++.+++. .-+| +.+|-..
T Consensus 115 e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~--~~iP-V~vKl~p----------------- 174 (334)
T PRK07565 115 GWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSA--VSIP-VAVKLSP----------------- 174 (334)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhc--cCCc-EEEEeCC-----------------
Confidence 45677788888999999995443111 11 2345777877774 1234 4444210
Q ss_pred CCCCccccccHHHHHHHHHHHHHccCcEEEEecc
Q 022982 174 APRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 174 ~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
+..+..+.++...++||+.|++=.+
T Consensus 175 ---------~~~~~~~~a~~l~~~G~dgI~~~n~ 199 (334)
T PRK07565 175 ---------YFSNLANMAKRLDAAGADGLVLFNR 199 (334)
T ss_pred ---------CchhHHHHHHHHHHcCCCeEEEECC
Confidence 1223456667777999999987555
No 391
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=69.00 E-value=27 Score=33.75 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=18.9
Q ss_pred cHHHHHHHHHHHHHcc-CcEEEE
Q 022982 183 DVDLLIRRAERCLEAG-ADMIMI 204 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAG-A~~Vii 204 (289)
|.++.++.++.--++| +|+|-|
T Consensus 226 ~~~e~~~~~~~l~~~G~vd~i~v 248 (343)
T cd04734 226 SPDEALEIAARLAAEGLIDYVNV 248 (343)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEe
Confidence 5788888888888998 899988
No 392
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=68.99 E-value=61 Score=30.53 Aligned_cols=94 Identities=13% Similarity=0.153 Sum_probs=67.4
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhH---HHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHH-HcCCC
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPF---IEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCK-QVGFD 116 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~---l~eKI~l~~~~gV~v~~G-tlfE~a~~qg~~~~~~yl~~~k-~lGF~ 116 (289)
+...+++..++|+..+|+|+.-..-+..+. |++.++.+|++|.+|..- =+..+- +.+..|.+..- .+|+|
T Consensus 42 f~~~ii~~l~~~v~~vK~g~~lf~~~G~~gi~~l~~~~~~~~~~g~~VilD~K~~DIp-----nTv~~~a~a~~~~~g~D 116 (261)
T TIGR02127 42 FCLRIIDATAEYAAVVKPQVAFFERFGSEGFKALEEVIAHARSLGLPVLADVKRGDIG-----STASAYAKAWLGHLHAD 116 (261)
T ss_pred HHHHHHHhcCCcceEEecCHHHHHhcCHHHHHHHHHHHHHHHHCCCeEEEEeeccChH-----HHHHHHHHHHHhhcCCC
Confidence 357899999999999999997666665443 677779999999877653 233332 24556666655 79999
Q ss_pred EEEecCCcccCChhHHHHHHHHHHHcC
Q 022982 117 TIELNVGSLEIPEETLLRYVRLVKSAG 143 (289)
Q Consensus 117 ~IEISdGti~i~~~~r~~lI~~~~~~G 143 (289)
+|-|+- -+..+....+++.+.+.|
T Consensus 117 ~vTvh~---~~G~d~l~~~~~~~~~~~ 140 (261)
T TIGR02127 117 ALTVSP---YLGLDSLRPFLEYARANG 140 (261)
T ss_pred EEEECC---cCCHHHHHHHHHHHhhcC
Confidence 999984 556666666777766654
No 393
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=68.94 E-value=33 Score=31.36 Aligned_cols=147 Identities=12% Similarity=0.196 Sum_probs=74.6
Q ss_pred eEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCce----ecCCcHHHHHHHhCCchH
Q 022982 28 EMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVY----VSTGDWAEHLIRNGPSAF 103 (289)
Q Consensus 28 ~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~----v~~GtlfE~a~~qg~~~~ 103 (289)
+.+|-+|=+..+.++++.+.+.-+++|-+- +-. .+.+.+-++..|++|+. +.|+|-+|..
T Consensus 59 ~~~dvHLMv~~p~~~i~~~~~~gad~i~~H-------~Ea-~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i-------- 122 (220)
T PRK08883 59 APIDVHLMVKPVDRIIPDFAKAGASMITFH-------VEA-SEHVDRTLQLIKEHGCQAGVVLNPATPLHHL-------- 122 (220)
T ss_pred CCEEEEeccCCHHHHHHHHHHhCCCEEEEc-------ccC-cccHHHHHHHHHHcCCcEEEEeCCCCCHHHH--------
Confidence 446666644434446666666555555321 111 12477888889988874 4567765543
Q ss_pred HHHHHHHHHcCCCEEEec-CC--cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 022982 104 KEYVEDCKQVGFDTIELN-VG--SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (289)
Q Consensus 104 ~~yl~~~k~lGF~~IEIS-dG--ti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 180 (289)
+.|++.+..+=+=.|+-- .| +++...+.-.++.+...++|+.+. +-+ ++ . +.
T Consensus 123 ~~~l~~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~--I~v-dG-------------G-I~-------- 177 (220)
T PRK08883 123 EYIMDKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIR--LEI-DG-------------G-VK-------- 177 (220)
T ss_pred HHHHHhCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCee--EEE-EC-------------C-CC--------
Confidence 344444332211111111 13 455555543334344444444322 222 00 0 01
Q ss_pred cccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHH
Q 022982 181 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVI 225 (289)
Q Consensus 181 ~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii 225 (289)
.+.+....+|||+.+++ ++.||.++. ..+.+.++.
T Consensus 178 -------~eni~~l~~aGAd~vVv-GSaIf~~~d--~~~~i~~l~ 212 (220)
T PRK08883 178 -------VDNIREIAEAGADMFVA-GSAIFGQPD--YKAVIDEMR 212 (220)
T ss_pred -------HHHHHHHHHcCCCEEEE-eHHHhCCCC--HHHHHHHHH
Confidence 46777888999999988 456886543 334444443
No 394
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=68.85 E-value=51 Score=30.75 Aligned_cols=96 Identities=13% Similarity=0.070 Sum_probs=65.7
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhC-CceecCCc----HHHHHHHh--CC------------ch
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGD----WAEHLIRN--GP------------SA 102 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~~Gt----lfE~a~~q--g~------------~~ 102 (289)
..+.+++.-+++|| +|.+...+.+++.+++.+...++. +++++-.| -+|.|+.. |. ++
T Consensus 31 ~A~~~~~~GAdiID---IG~~~~~~~~~ee~~r~v~~i~~~~~~piSIDT~~~~v~e~aL~~~~G~~iINsIs~~~~~e~ 107 (252)
T cd00740 31 VARQQVEGGAQILD---LNVDYGGLDGVSAMKWLLNLLATEPTVPLMLDSTNWEVIEAGLKCCQGKCVVNSINLEDGEER 107 (252)
T ss_pred HHHHHHHCCCCEEE---ECCCCCCCCHHHHHHHHHHHHHHhcCCcEEeeCCcHHHHHHHHhhCCCCcEEEeCCCCCCccc
Confidence 34555666677777 588776666677778887778876 99999765 48888875 21 24
Q ss_pred HHHHHHHHHHcCCCEEEecCC--cccCChhHHHHHHHHHH
Q 022982 103 FKEYVEDCKQVGFDTIELNVG--SLEIPEETLLRYVRLVK 140 (289)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdG--ti~i~~~~r~~lI~~~~ 140 (289)
+++.+..+++.|...|=+... -+..+.+.|.++.++..
T Consensus 108 ~~~~~~~~~~~~~~vV~m~~~~~g~p~t~~~~~~~~~~~~ 147 (252)
T cd00740 108 FLKVARLAKEHGAAVVVLAFDEQGQAKTRDKKVEIAERAY 147 (252)
T ss_pred cHHHHHHHHHhCCCEEEeccCCCCCCCCHHHHHHHHHHHH
Confidence 678889999999999987752 23444455555554443
No 395
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=68.82 E-value=72 Score=29.72 Aligned_cols=131 Identities=21% Similarity=0.238 Sum_probs=86.2
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~---GtlfE~a~~qg~~~~~~yl~~~k~lGF~~I 118 (289)
+.+-..+.-++++-.+ .+.|.+.++.-++-+|++|+.++- |.| .+++=.++.+++|.+.+
T Consensus 72 e~~ma~~aGAd~~tV~-------g~A~~~TI~~~i~~A~~~~~~v~iDl~~~~----------~~~~~~~~l~~~gvd~~ 134 (217)
T COG0269 72 EARMAFEAGADWVTVL-------GAADDATIKKAIKVAKEYGKEVQIDLIGVW----------DPEQRAKWLKELGVDQV 134 (217)
T ss_pred HHHHHHHcCCCEEEEE-------ecCCHHHHHHHHHHHHHcCCeEEEEeecCC----------CHHHHHHHHHHhCCCEE
Confidence 4455555555655443 467888999999999999998874 544 23444455677999999
Q ss_pred EecCCcc----cCCh-hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHH
Q 022982 119 ELNVGSL----EIPE-ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAER 193 (289)
Q Consensus 119 EISdGti----~i~~-~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~ 193 (289)
.+--|.- -.+. .+.++-|++..+.|++ +-+ .. + ++ .+.+..
T Consensus 135 ~~H~g~D~q~~G~~~~~~~l~~ik~~~~~g~~----vAV---aG-----G-------I~---------------~~~i~~ 180 (217)
T COG0269 135 ILHRGRDAQAAGKSWGEDDLEKIKKLSDLGAK----VAV---AG-----G-------IT---------------PEDIPL 180 (217)
T ss_pred EEEecccHhhcCCCccHHHHHHHHHhhccCce----EEE---ec-----C-------CC---------------HHHHHH
Confidence 9987754 2333 4556777888776655 333 11 0 11 466777
Q ss_pred HHHccCcEEEEeccccccCCCCccHHHHHHHHh
Q 022982 194 CLEAGADMIMIDSDDVCKHADSLRADIIAKVIG 226 (289)
Q Consensus 194 dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~ 226 (289)
+.+.|++.||+ +|.|+++.+- ....+++.+
T Consensus 181 ~~~~~~~ivIv-GraIt~a~dp--~~~a~~~~~ 210 (217)
T COG0269 181 FKGIGADIVIV-GRAITGAKDP--AEAARKFKE 210 (217)
T ss_pred HhcCCCCEEEE-CchhcCCCCH--HHHHHHHHH
Confidence 88999887766 8889988863 333444444
No 396
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=68.79 E-value=45 Score=31.06 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=18.5
Q ss_pred HHHHHHHHHccCcEEEEeccccccCC
Q 022982 188 IRRAERCLEAGADMIMIDSDDVCKHA 213 (289)
Q Consensus 188 I~~~~~dLeAGA~~ViiEarGI~d~~ 213 (289)
.+.+++.+++||+-|+| ++.|+++.
T Consensus 223 ~ed~~~~~~~Gad~vlV-GsaI~~~~ 247 (260)
T PRK00278 223 PEDLKRLAKAGADAVLV-GESLMRAD 247 (260)
T ss_pred HHHHHHHHHcCCCEEEE-CHHHcCCC
Confidence 46677788999999987 44566654
No 397
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=68.77 E-value=50 Score=29.08 Aligned_cols=46 Identities=22% Similarity=0.335 Sum_probs=30.1
Q ss_pred HHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecCCc
Q 022982 189 RRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNP 240 (289)
Q Consensus 189 ~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklifEAP~k 240 (289)
+++.+.++.|++.-+-.+ ++. -+...+.+++..++.+|++||...|
T Consensus 158 ~~~~~~~~~g~~~~~~~~--~~~----~~~~~~~~~i~~~~~dril~~TD~p 203 (252)
T TIGR00010 158 ELAKKLLDLGFYISISGI--VTF----KNAKSLREVVRKIPLERLLVETDSP 203 (252)
T ss_pred HHHHHHHHCCCeEeecee--Eec----CCcHHHHHHHHhCCHHHeEecccCC
Confidence 455666667776655431 111 1234577788889999999999875
No 398
>PLN02540 methylenetetrahydrofolate reductase
Probab=68.69 E-value=59 Score=34.23 Aligned_cols=137 Identities=13% Similarity=0.045 Sum_probs=74.6
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCCh---
Q 022982 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPE--- 129 (289)
Q Consensus 54 ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~--- 129 (289)
-+|+=.-||.-.-+....|+--..+-+.+|+.+++= |- --.+...+++.|..++++|++.|=+=.|--.-+.
T Consensus 29 P~FisVT~gAgGst~~~Tl~la~~lq~~~Gie~i~HLTC----rd~n~~~L~~~L~~a~~~GIrNILALrGDpp~~~d~~ 104 (565)
T PLN02540 29 PLFCDITWGAGGSTADLTLDIANRMQNMICVETMMHLTC----TNMPVEKIDHALETIKSNGIQNILALRGDPPHGQDKF 104 (565)
T ss_pred CCEEEeCCCCCCCcHHHHHHHHHHHHHhcCCCeeEEeee----cCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCc
Confidence 677778888776555554544444444569977752 21 1222336888999999999998844444332221
Q ss_pred -------hHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcE
Q 022982 130 -------ETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 201 (289)
Q Consensus 130 -------~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ 201 (289)
+.=..||+.+++. | ..|++--.....|-.+....+.-.. ..+++.-++..++-++|||++
T Consensus 105 ~~~~g~F~~A~dLV~~Ir~~~g----d~f~IgVAGYPEgHpe~~~~~~~~~--------~~~~~~dl~~Lk~KvdAGAdF 172 (565)
T PLN02540 105 VQVEGGFACALDLVKHIRSKYG----DYFGITVAGYPEAHPDVIGGDGLAT--------PEAYQKDLAYLKEKVDAGADL 172 (565)
T ss_pred CCCCCCcccHHHHHHHHHHhCC----CCceEEEeCCCCCCCcccccccccC--------CCChHHHHHHHHHHHHcCCCE
Confidence 1234566666653 1 0122211111101000000000001 125678899999999999999
Q ss_pred EEEec
Q 022982 202 IMIDS 206 (289)
Q Consensus 202 ViiEa 206 (289)
+|.--
T Consensus 173 iITQl 177 (565)
T PLN02540 173 IITQL 177 (565)
T ss_pred Eeecc
Confidence 99865
No 399
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=68.47 E-value=24 Score=34.00 Aligned_cols=95 Identities=20% Similarity=0.263 Sum_probs=57.3
Q ss_pred ChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcc
Q 022982 68 PKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (289)
Q Consensus 68 p~~~l~eKI~l~~~~-gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v 146 (289)
+.+.+++.++..+.. .|-+..|.. ....+.++.+-+.|.+.|+|+-..- +.+...++|+.+++.+
T Consensus 68 ~~~~~~~~i~~vk~~l~v~~~~~~~---------~~~~~~~~~l~eagv~~I~vd~~~G--~~~~~~~~i~~ik~~~--- 133 (325)
T cd00381 68 SIEEQAEEVRKVKGRLLVGAAVGTR---------EDDKERAEALVEAGVDVIVIDSAHG--HSVYVIEMIKFIKKKY--- 133 (325)
T ss_pred CHHHHHHHHHHhccCceEEEecCCC---------hhHHHHHHHHHhcCCCEEEEECCCC--CcHHHHHHHHHHHHHC---
Confidence 335566666666532 222223321 1456778888889999999865332 2256678899998864
Q ss_pred cceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEe
Q 022982 147 KPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMID 205 (289)
Q Consensus 147 ~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiE 205 (289)
|++-+-. ..+ .+ .+.++..++||||.|++.
T Consensus 134 -p~v~Vi~--G~v-----------~t---------------~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 134 -PNVDVIA--GNV-----------VT---------------AEAARDLIDAGADGVKVG 163 (325)
T ss_pred -CCceEEE--CCC-----------CC---------------HHHHHHHHhcCCCEEEEC
Confidence 2222210 111 11 577788889999999984
No 400
>PRK08444 hypothetical protein; Provisional
Probab=68.41 E-value=1.2e+02 Score=29.65 Aligned_cols=95 Identities=14% Similarity=0.156 Sum_probs=66.0
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhC--CceecCCcHHHHHHHhC--CchHHHHHHHHHHcCCCEEEec-----C--
Q 022982 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNG--PSAFKEYVEDCKQVGFDTIELN-----V-- 122 (289)
Q Consensus 54 ID~lKfg~GTs~l~p~~~l~eKI~l~~~~--gV~v~~GtlfE~a~~qg--~~~~~~yl~~~k~lGF~~IEIS-----d-- 122 (289)
+.=+=+-+|-..-.+-+.+.+-++..|+. ++.++.=|..|+.+... .-..++.++..|+.|.+.+--. +
T Consensus 97 ~~ei~iv~G~~p~~~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl~~~~g~~aEi~~~~ 176 (353)
T PRK08444 97 IKEVHIVSAHNPNYGYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYGVDSMPGGGAEIFDEE 176 (353)
T ss_pred CCEEEEeccCCCCCCHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHHHHHHhCcccCCCCCchhcCHH
Confidence 33333444444444667788899988875 56665446777765441 1358899999999999876431 1
Q ss_pred -----CcccCChhHHHHHHHHHHHcCCcccc
Q 022982 123 -----GSLEIPEETLLRYVRLVKSAGLKAKP 148 (289)
Q Consensus 123 -----Gti~i~~~~r~~lI~~~~~~G~~v~~ 148 (289)
-.-..+.++|.++++.|++.|+++-+
T Consensus 177 vr~~I~p~k~~~~~~~~i~~~a~~~Gi~~~s 207 (353)
T PRK08444 177 VRKKICKGKVSSERWLEIHKYWHKKGKMSNA 207 (353)
T ss_pred HHhhhCCCCCCHHHHHHHHHHHHHcCCCccc
Confidence 13367789999999999999999765
No 401
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=68.37 E-value=1.1e+02 Score=29.92 Aligned_cols=106 Identities=13% Similarity=0.180 Sum_probs=67.0
Q ss_pred chhHHHHHHHhhcc-cccEEEecCccccc-cChhHHHHHHHHHHhC--CceecCCcHHHHHHHhCCchHHHHHHHHHHcC
Q 022982 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHSL-MPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVG 114 (289)
Q Consensus 39 g~~~~~DlLe~ag~-yID~lKfg~GTs~l-~p~~~l~eKI~l~~~~--gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lG 114 (289)
.+.++.+....+.+ =+.-+-|-.|-... .+-+.+.+.++..+++ +|.+.+|. -..++ ++.+|+.|
T Consensus 105 s~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~~~i~~Ik~~~p~i~i~~g~----------lt~e~-l~~Lk~aG 173 (371)
T PRK09240 105 DEEEIEREMAAIKKLGFEHILLLTGEHEAKVGVDYIRRALPIAREYFSSVSIEVQP----------LSEEE-YAELVELG 173 (371)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCCceeccCC----------CCHHH-HHHHHHcC
Confidence 34444444443322 26666665565544 4667788888877765 23333332 12333 47899999
Q ss_pred CCEEEecCCccc------C-------ChhHHHHHHHHHHHcCCcccceeeeecCC
Q 022982 115 FDTIELNVGSLE------I-------PEETLLRYVRLVKSAGLKAKPKFAVMFNK 156 (289)
Q Consensus 115 F~~IEISdGti~------i-------~~~~r~~lI~~~~~~G~~v~~E~g~k~~~ 156 (289)
++.+-++--|.+ | +.++|++.|+++++.||+ +.-.|.-.+.
T Consensus 174 v~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~-~v~~g~i~Gl 227 (371)
T PRK09240 174 LDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIR-KIGLGALLGL 227 (371)
T ss_pred CCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCC-eeceEEEecC
Confidence 999998877752 4 578999999999999997 2223554443
No 402
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=68.33 E-value=22 Score=35.53 Aligned_cols=119 Identities=15% Similarity=0.116 Sum_probs=78.3
Q ss_pred eeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCc-eecCC--cHHHHHHHh-C---
Q 022982 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G--- 99 (289)
Q Consensus 27 T~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV-~v~~G--tlfE~a~~q-g--- 99 (289)
|..+.=|-+....+..++++++.+..+.++.+-.-=|.-.-|...-+++++.++++|+ .++.| ++-+..+.. +
T Consensus 105 ~i~~gGGtPs~l~~~~l~~ll~~l~~~~~~~~~~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~~l~r~~ 184 (453)
T PRK09249 105 QLHWGGGTPTFLSPEQLRRLMALLREHFNFAPDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQKAVNRIQ 184 (453)
T ss_pred EEEECCcccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCC
Confidence 3344444333226788999999887765432100012223454556799999999999 77777 665544421 1
Q ss_pred -CchHHHHHHHHHHcCCC--EEEecCCcccCChhHHHHHHHHHHHcCCc
Q 022982 100 -PSAFKEYVEDCKQVGFD--TIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (289)
Q Consensus 100 -~~~~~~yl~~~k~lGF~--~IEISdGti~i~~~~r~~lI~~~~~~G~~ 145 (289)
.+.+.+-++.+++.||+ .+-+.-|.=.-+.++..+.++.+.+.|..
T Consensus 185 ~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~~l~~~~~l~~~ 233 (453)
T PRK09249 185 PFEFTFALVEAARELGFTSINIDLIYGLPKQTPESFARTLEKVLELRPD 233 (453)
T ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCHHHHHHHHHHHHhcCCC
Confidence 22456677888899997 45566777778888899999999998765
No 403
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=68.28 E-value=60 Score=29.07 Aligned_cols=105 Identities=20% Similarity=0.156 Sum_probs=60.7
Q ss_pred CceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceec----CC-----------
Q 022982 25 GVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS----TG----------- 89 (289)
Q Consensus 25 GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~----~G----------- 89 (289)
++..+.+-|.. ....++.+++. | +|.+ -.||..+-+++.+++-++.+.+.-|.++ .|
T Consensus 74 ~~pv~~~ggi~---~~~d~~~~~~~-G--~~~v--ilg~~~l~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~ 145 (232)
T TIGR03572 74 FMPLTVGGGIR---SLEDAKKLLSL-G--ADKV--SINTAALENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSD 145 (232)
T ss_pred CCCEEEECCCC---CHHHHHHHHHc-C--CCEE--EEChhHhcCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEEC
Confidence 44555555442 33444444443 2 3333 4578888888888888877644324322 22
Q ss_pred cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc--CChhHHHHHHHHHHHc
Q 022982 90 DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE--IPEETLLRYVRLVKSA 142 (289)
Q Consensus 90 tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~--i~~~~r~~lI~~~~~~ 142 (289)
+|.+. ......++.+.+.+.|++.|.+++=+-+ .+. -..++++++++.
T Consensus 146 ~~~~~----~~~~~~~~~~~~~~~G~d~i~i~~i~~~g~~~g-~~~~~~~~i~~~ 195 (232)
T TIGR03572 146 NGRRA----TGRDPVEWAREAEQLGAGEILLNSIDRDGTMKG-YDLELIKTVSDA 195 (232)
T ss_pred CCccc----CCCCHHHHHHHHHHcCCCEEEEeCCCccCCcCC-CCHHHHHHHHhh
Confidence 22121 1224668889999999999999982221 111 125778888773
No 404
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=67.99 E-value=1.4e+02 Score=29.95 Aligned_cols=117 Identities=19% Similarity=0.203 Sum_probs=75.3
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc--------
Q 022982 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL-------- 125 (289)
Q Consensus 54 ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti-------- 125 (289)
+..+=|.-.++.. +++.+++..+..++.|+....-+ .-+ .-++.++.+++.|++.|.+.--|.
T Consensus 246 ~~~i~f~Dd~f~~-~~~~~~~l~~~l~~~~i~~~~~~------~~~--~~~e~l~~l~~aG~~~v~iGiES~s~~~L~~~ 316 (472)
T TIGR03471 246 VREFFFDDDTFTD-DKPRAEEIARKLGPLGVTWSCNA------RAN--VDYETLKVMKENGLRLLLVGYESGDQQILKNI 316 (472)
T ss_pred CcEEEEeCCCCCC-CHHHHHHHHHHHhhcCceEEEEe------cCC--CCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHh
Confidence 3445566565544 44567788888888877432111 011 236788999999999998876655
Q ss_pred --cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEE
Q 022982 126 --EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIM 203 (289)
Q Consensus 126 --~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~Vi 203 (289)
..+.++-.+.|+.++++|+.+...|=+=++. +|.+++.+.++...+.+.+.+.
T Consensus 317 ~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPg-------------------------et~e~~~~ti~~~~~l~~~~~~ 371 (472)
T TIGR03471 317 KKGLTVEIARRFTRDCHKLGIKVHGTFILGLPG-------------------------ETRETIRKTIDFAKELNPHTIQ 371 (472)
T ss_pred cCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCC-------------------------CCHHHHHHHHHHHHhcCCCcee
Confidence 3566777889999999999877665431111 1355566666666677777654
Q ss_pred E
Q 022982 204 I 204 (289)
Q Consensus 204 i 204 (289)
+
T Consensus 372 ~ 372 (472)
T TIGR03471 372 V 372 (472)
T ss_pred e
Confidence 4
No 405
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=67.84 E-value=15 Score=32.33 Aligned_cols=65 Identities=18% Similarity=0.257 Sum_probs=51.1
Q ss_pred HHHHHHhCCc-eec-CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcc
Q 022982 75 VVKRAHQHDV-YVS-TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (289)
Q Consensus 75 KI~l~~~~gV-~v~-~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v 146 (289)
..++++++|| .+. .|--.++|+..- ...+.++||+.+=++|++-+.+.+.....++.++..|.++
T Consensus 129 L~~~L~~~~i~~lii~G~~t~~CV~~T-------~~~a~~~g~~v~v~~Da~~~~~~~~~~~al~~~~~~G~~i 195 (196)
T cd01011 129 LAEYLRERGIDRVDVVGLATDYCVKAT-------ALDALKAGFEVRVLEDACRAVDPETIERAIEEMKEAGVVL 195 (196)
T ss_pred HHHHHHHCCCCEEEEEEecccHHHHHH-------HHHHHHCCCEEEEeccccCCCCHHHHHHHHHHHHHccCEE
Confidence 3455678999 444 477888888774 3345567999999999999999999999999999877653
No 406
>PRK15108 biotin synthase; Provisional
Probab=67.81 E-value=1e+02 Score=30.00 Aligned_cols=68 Identities=18% Similarity=0.282 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHhCCceecC--CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc---------cCChhHHHHHHHH
Q 022982 70 PFIEEVVKRAHQHDVYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL---------EIPEETLLRYVRL 138 (289)
Q Consensus 70 ~~l~eKI~l~~~~gV~v~~--GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti---------~i~~~~r~~lI~~ 138 (289)
+.+.+.++.+|+.++.++. |. .-++.++..|+.|.|.+=+|=-|. .=+-++|++.|+.
T Consensus 111 e~i~~~i~~ik~~~i~v~~s~G~-----------ls~e~l~~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~ 179 (345)
T PRK15108 111 PYLEQMVQGVKAMGLETCMTLGT-----------LSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEK 179 (345)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCc-----------CCHHHHHHHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHH
Confidence 5688889999998886552 41 226778888999999776643321 2367899999999
Q ss_pred HHHcCCcccc
Q 022982 139 VKSAGLKAKP 148 (289)
Q Consensus 139 ~~~~G~~v~~ 148 (289)
+++.|+++.+
T Consensus 180 a~~~G~~v~s 189 (345)
T PRK15108 180 VRDAGIKVCS 189 (345)
T ss_pred HHHcCCceee
Confidence 9999997655
No 407
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=67.74 E-value=82 Score=30.89 Aligned_cols=202 Identities=14% Similarity=0.207 Sum_probs=124.2
Q ss_pred hHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceec----------CC-cHHHHHH------HhC----
Q 022982 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS----------TG-DWAEHLI------RNG---- 99 (289)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~----------~G-tlfE~a~------~qg---- 99 (289)
..++++|..|-+. +++-|.+-+++-+.++.-|+-|.+.+-++- .| ++++.+. .+.
T Consensus 10 v~~k~lL~~A~~~----~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~g~~~~~~~~~~~~~~a~~a~~~ 85 (321)
T PRK07084 10 VNTREMFAKAVKG----GYAIPAYNFNNMEQLQAIIQACVETKSPVILQVSKGARKYANATLLRYMAQGAVEYAKELGCP 85 (321)
T ss_pred cCHHHHHHHHHHC----CceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhHHhhCCchHHHHHHHHHHHHHHHcCCC
Confidence 3677777776553 677888888888888888888888876542 23 2344322 211
Q ss_pred -C-------chHHHHHHHHHHcCCCEEEecCCcccCChhH--HHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccc
Q 022982 100 -P-------SAFKEYVEDCKQVGFDTIELNVGSLEIPEET--LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 169 (289)
Q Consensus 100 -~-------~~~~~yl~~~k~lGF~~IEISdGti~i~~~~--r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~ 169 (289)
| ..=-+.+..|-+.||+.|=+..-.+++.+-- =.++++.++..|.-|--|+|.=-+ .+|....
T Consensus 86 VPV~lHLDHg~~~e~i~~ai~~GftSVMiD~S~lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg------~ed~~~~- 158 (321)
T PRK07084 86 IPIVLHLDHGDSFELCKDCIDSGFSSVMIDGSHLPYEENVALTKKVVEYAHQFDVTVEGELGVLAG------VEDEVSA- 158 (321)
T ss_pred CcEEEECCCCCCHHHHHHHHHcCCCEEEeeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecC------ccCCccC-
Confidence 1 1124577888999999999976664433322 236788888899999999998321 1121000
Q ss_pred ccccCCCCccccccHHHHHHHHHHHHHccCcEEEEec---cccccC-----CCCccHHHHHHHHhccC-CCceEEecC-C
Q 022982 170 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS---DDVCKH-----ADSLRADIIAKVIGRLG-LEKTMFEAT-N 239 (289)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEa---rGI~d~-----~G~~r~d~v~~ii~~l~-~eklifEAP-~ 239 (289)
. .....||++..+.+++ -|+|.+-+== -|+|.. .-+++.|.+++|-+.++ .--++==+. .
T Consensus 159 --~-----~~~~T~peeA~~Fv~~---TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~~vPLVLHGgSg~ 228 (321)
T PRK07084 159 --E-----HHTYTQPEEVEDFVKK---TGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIPGFPIVLHGSSSV 228 (321)
T ss_pred --c-----ccccCCHHHHHHHHHH---hCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcCCCCEEEeCCCCC
Confidence 0 0111257666666653 5888776543 389986 34699999999988873 333333333 3
Q ss_pred chhHHHHHHHhCCCc--ccccCCCCc
Q 022982 240 PRTSEWFIRRYGPKV--NLFVDHSQV 263 (289)
Q Consensus 240 k~qQ~~~I~~fG~~V--NLgI~~~eV 263 (289)
|..-..-|..||-+. |.||+.+|+
T Consensus 229 ~~~~~~~~~~~g~~~~~~~Gi~~e~~ 254 (321)
T PRK07084 229 PQEYVKTINEYGGKLKDAIGIPEEQL 254 (321)
T ss_pred cHHHHHHHHHhcCccccCCCCCHHHH
Confidence 444445577777554 334666654
No 408
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=67.73 E-value=11 Score=34.27 Aligned_cols=92 Identities=16% Similarity=0.272 Sum_probs=57.0
Q ss_pred HHcCCCEEEecCCcccC-ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHH
Q 022982 111 KQVGFDTIELNVGSLEI-PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (289)
Q Consensus 111 k~lGF~~IEISdGti~i-~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~ 189 (289)
.+.|++.+=|=|=.-.+ ....-.++|+++.++-+ +.++.+. .+.+ .+
T Consensus 39 ~~~g~~~l~ivDLdaa~~g~~~n~~~i~~i~~~~~-----~~i~vgG------------GIrs---------------~e 86 (229)
T PF00977_consen 39 NEQGADELHIVDLDAAKEGRGSNLELIKEIAKETG-----IPIQVGG------------GIRS---------------IE 86 (229)
T ss_dssp HHTT-SEEEEEEHHHHCCTHHHHHHHHHHHHHHSS-----SEEEEES------------SE-S---------------HH
T ss_pred HHcCCCEEEEEEccCcccCchhHHHHHHHHHhcCC-----ccEEEeC------------ccCc---------------HH
Confidence 68899988887654444 45556688888888522 1221111 1111 68
Q ss_pred HHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecCCc
Q 022982 190 RAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNP 240 (289)
Q Consensus 190 ~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklifEAP~k 240 (289)
.+++.|++||++|++=+.-+. +.++++++++.+|.+++++=-.-+
T Consensus 87 d~~~ll~~Ga~~Vvigt~~~~------~~~~l~~~~~~~g~~~ivvslD~~ 131 (229)
T PF00977_consen 87 DAERLLDAGADRVVIGTEALE------DPELLEELAERYGSQRIVVSLDAR 131 (229)
T ss_dssp HHHHHHHTT-SEEEESHHHHH------CCHHHHHHHHHHGGGGEEEEEEEE
T ss_pred HHHHHHHhCCCEEEeChHHhh------chhHHHHHHHHcCcccEEEEEEee
Confidence 888999999999999776332 235577777777777776654433
No 409
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=67.12 E-value=31 Score=32.12 Aligned_cols=113 Identities=20% Similarity=0.192 Sum_probs=0.0
Q ss_pred CCCceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecC-CcHHH--------
Q 022982 23 RFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST-GDWAE-------- 93 (289)
Q Consensus 23 ~~GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~-GtlfE-------- 93 (289)
..|+|.|+|.|- ..+.. +++.++--+..|-.++. |..+-
T Consensus 53 ~~GvTtv~d~g~-------------------------------~~~~~-~~~~~~~g~~~gPr~~~~G~~~~~~~~~~~~ 100 (342)
T cd01299 53 RAGFTTVRDAGG-------------------------------ADYGL-LRDAIDAGLIPGPRVFASGRALSQTGGHGDP 100 (342)
T ss_pred hCCCcEEEeCCC-------------------------------cchHH-HHHHHHcCCccCCceeecchhhcccCCCCcc
Q ss_pred ------------HHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-----------cCChhHHHHHHHHHHHcCCccccee
Q 022982 94 ------------HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL-----------EIPEETLLRYVRLVKSAGLKAKPKF 150 (289)
Q Consensus 94 ------------~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti-----------~i~~~~r~~lI~~~~~~G~~v~~E~ 150 (289)
.....+++.+.+.++...+.|.+.|-+--.-. .++.+...++++.+++.|+.+....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 101 RGLSGLFPAGGLAAVVDGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred ccccccccccCCcceecCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEEEe
Q ss_pred eeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEE
Q 022982 151 AVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMI 202 (289)
Q Consensus 151 g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~V 202 (289)
.- -..++..+++|++.|
T Consensus 181 ~~-----------------------------------~~~i~~~l~~G~~~i 197 (342)
T cd01299 181 YG-----------------------------------AEAIRRAIRAGVDTI 197 (342)
T ss_pred CC-----------------------------------HHHHHHHHHcCCCEE
No 410
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=66.95 E-value=27 Score=33.82 Aligned_cols=25 Identities=12% Similarity=0.167 Sum_probs=20.4
Q ss_pred cHHHHHHHHHHHHHccCcEEEEecc
Q 022982 183 DVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
+.++.++.++.--++|+|+|-|=+.
T Consensus 233 ~~ee~~~i~~~L~~~GvD~I~Vs~g 257 (353)
T cd04735 233 RMEDTLALVDKLADKGLDYLHISLW 257 (353)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccC
Confidence 4777888888888999999988543
No 411
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=66.95 E-value=36 Score=29.26 Aligned_cols=119 Identities=18% Similarity=0.272 Sum_probs=66.5
Q ss_pred CcccccccccCCCCCCCCCCCCCCceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHh
Q 022982 2 SGYYYGWKSFDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQ 81 (289)
Q Consensus 2 ~~~~~~~~~f~~~~~R~~KPR~~GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~ 81 (289)
.||+.-|..-..-. +.+-...++|+|.=-.+.+. +. |.- .+ +.+ .+.+...+.+..+++
T Consensus 2 v~y~~~w~~~~~~~--~~~~~~~~~thvi~~f~~v~-~~----------~~~---~~--~~~---~~~~~~~~~i~~l~~ 60 (210)
T cd00598 2 ICYYDGWSSGRGPD--PTDIPLSLCTHIIYAFAEIS-SD----------GSL---NL--FGD---KSEEPLKGALEELAS 60 (210)
T ss_pred EEEEccccccCCCC--hhhCCcccCCEEEEeeEEEC-CC----------CCE---ec--ccC---cccHHHHHHHHHHHH
Confidence 36666665432211 45666678888876555322 00 000 00 111 123346677777777
Q ss_pred C--CceecC--CcHHHH---HHHhCCc----hHHHHHHHHHHcCCCEEEecCCcccCC----hhHHHHHHHHHHH
Q 022982 82 H--DVYVST--GDWAEH---LIRNGPS----AFKEYVEDCKQVGFDTIELNVGSLEIP----EETLLRYVRLVKS 141 (289)
Q Consensus 82 ~--gV~v~~--GtlfE~---a~~qg~~----~~~~yl~~~k~lGF~~IEISdGti~i~----~~~r~~lI~~~~~ 141 (289)
. |+++.+ ||+-.. .+..++. -++...+.+++.|||.|.|.=-..... .+....+++.+++
T Consensus 61 ~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~ 135 (210)
T cd00598 61 KKPGLKVLISIGGWTDSSPFTLASDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRELRS 135 (210)
T ss_pred hCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHHHHH
Confidence 6 887775 653221 1122222 357778888999999999976555444 3556677777766
No 412
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=66.85 E-value=12 Score=36.90 Aligned_cols=46 Identities=17% Similarity=0.266 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHH----HHHHHHHHHcCCccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETL----LRYVRLVKSAGLKAK 147 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r----~~lI~~~~~~G~~v~ 147 (289)
...+.++.++++||+.||+.+.- ...+..++ .++-+.+++.|++|.
T Consensus 33 ~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~v~ 85 (382)
T TIGR02631 33 DPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDETGLKVP 85 (382)
T ss_pred CHHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHHhCCeEE
Confidence 67889999999999999998754 23443332 456667888899854
No 413
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=66.76 E-value=15 Score=39.25 Aligned_cols=63 Identities=19% Similarity=0.170 Sum_probs=47.7
Q ss_pred cChhHHHHHHHHHHhCCceec--CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCC
Q 022982 67 MPKPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGL 144 (289)
Q Consensus 67 ~p~~~l~eKI~l~~~~gV~v~--~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~ 144 (289)
-+++..++-|+.+|++||.+. +|+--+.|..- ++++|++.+ .-.+.+++|.++|+..++.|-
T Consensus 446 ~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~i-----------A~~lGI~~v-----~a~~~PedK~~~v~~lq~~g~ 509 (675)
T TIGR01497 446 IVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAI-----------AAEAGVDDF-----IAEATPEDKIALIRQEQAEGK 509 (675)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHH-----------HHHcCCCEE-----EcCCCHHHHHHHHHHHHHcCC
Confidence 345678899999999999554 68765555444 488898754 347889999999999999775
Q ss_pred c
Q 022982 145 K 145 (289)
Q Consensus 145 ~ 145 (289)
.
T Consensus 510 ~ 510 (675)
T TIGR01497 510 L 510 (675)
T ss_pred e
Confidence 3
No 414
>PLN02591 tryptophan synthase
Probab=66.64 E-value=41 Score=31.55 Aligned_cols=63 Identities=10% Similarity=0.104 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhCCc--eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCc
Q 022982 71 FIEEVVKRAHQHDV--YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (289)
Q Consensus 71 ~l~eKI~l~~~~gV--~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~ 145 (289)
-+++-++.|++.|| -+.|.=-+ +..++|.+.|++.|++.|-+-.-+. .++|.+.|.... .||-
T Consensus 94 G~~~F~~~~~~aGv~GviipDLP~--------ee~~~~~~~~~~~gl~~I~lv~Ptt---~~~ri~~ia~~~-~gFI 158 (250)
T PLN02591 94 GIDKFMATIKEAGVHGLVVPDLPL--------EETEALRAEAAKNGIELVLLTTPTT---PTERMKAIAEAS-EGFV 158 (250)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCH--------HHHHHHHHHHHHcCCeEEEEeCCCC---CHHHHHHHHHhC-CCcE
Confidence 46777888888888 44454212 2567888889999998887654332 245656665553 3555
No 415
>PRK06267 hypothetical protein; Provisional
Probab=66.56 E-value=62 Score=31.40 Aligned_cols=112 Identities=16% Similarity=0.068 Sum_probs=64.1
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhCC---ceecCCc-HHHHHHHhCCchHHHHHHHHHHcCCC-EEEecCCc-c-
Q 022982 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD---VYVSTGD-WAEHLIRNGPSAFKEYVEDCKQVGFD-TIELNVGS-L- 125 (289)
Q Consensus 53 yID~lKfg~GTs~l~p~~~l~eKI~l~~~~g---V~v~~Gt-lfE~a~~qg~~~~~~yl~~~k~lGF~-~IEISdGt-i- 125 (289)
.++.+=+..|.. ++.+.|.+.++..++.. +.++.|- -.+.+-.. +.-|++ .+|.++-. .
T Consensus 79 Gv~~~~lsgG~~--~~~~el~~i~e~I~~~~~~~~~~s~G~~d~~~~~~~------------~l~Gv~g~~ET~~~~~~~ 144 (350)
T PRK06267 79 GWKLEFISGGYG--YTTEEINDIAEMIAYIQGCKQYLNVGIIDFLNINLN------------EIEGVVGAVETVNPKLHR 144 (350)
T ss_pred CCCEEEEecCCC--CCHHHHHHHHHHHHHhhCCceEeecccCCHHHHhhc------------cccCceeeeecCCHHHHH
Confidence 356443555555 34556888888876653 3445562 22222111 112222 36666431 1
Q ss_pred ----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcE
Q 022982 126 ----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 201 (289)
Q Consensus 126 ----~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ 201 (289)
..+.+++.+.++.+++.|+++.+-+-+ +..+ +.+++.+.++.--+.+++.
T Consensus 145 ~i~~~~s~ed~~~~l~~ak~aGi~v~~g~Ii--GlgE------------------------t~ed~~~~l~~l~~l~~d~ 198 (350)
T PRK06267 145 EICPGKPLDKIKEMLLKAKDLGLKTGITIIL--GLGE------------------------TEDDIEKLLNLIEELDLDR 198 (350)
T ss_pred hhCCCCCHHHHHHHHHHHHHcCCeeeeeEEE--eCCC------------------------CHHHHHHHHHHHHHcCCCE
Confidence 468899999999999999997654333 1111 2455566666666788887
Q ss_pred EEE
Q 022982 202 IMI 204 (289)
Q Consensus 202 Vii 204 (289)
|.+
T Consensus 199 v~~ 201 (350)
T PRK06267 199 ITF 201 (350)
T ss_pred EEE
Confidence 654
No 416
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=66.31 E-value=45 Score=31.58 Aligned_cols=94 Identities=12% Similarity=0.106 Sum_probs=62.0
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccH
Q 022982 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184 (289)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~ 184 (289)
++.+.-++.|++.+-|=|= +.. -.++|+.+.+. +.+.++-+. | +
T Consensus 42 ~~A~~~~~~Ga~~lHvVDL----g~~-n~~~i~~i~~~-----~~~~v~vGG-----------------------G---I 85 (253)
T TIGR02129 42 YYAKLYKDDGVKGCHVIML----GPN-NDDAAKEALHA-----YPGGLQVGG-----------------------G---I 85 (253)
T ss_pred HHHHHHHHcCCCEEEEEEC----CCC-cHHHHHHHHHh-----CCCCEEEeC-----------------------C---c
Confidence 4455557889999988665 444 34677777662 112222111 0 1
Q ss_pred HHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecC
Q 022982 185 DLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT 238 (289)
Q Consensus 185 ~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklifEAP 238 (289)
. .+.+++.|++||++|+|=+.-+.+ ..+..+.++++.+++|.++|+.=-.
T Consensus 86 r--~e~v~~~l~aGa~rVvIGS~av~~--~~i~~~~~~~i~~~fG~~~IvvsiD 135 (253)
T TIGR02129 86 N--DTNAQEWLDEGASHVIVTSWLFTK--GKFDLKRLKEIVSLVGKDRLIVDLS 135 (253)
T ss_pred C--HHHHHHHHHcCCCEEEECcHHHhC--CCCCHHHHHHHHHHhCCCCEEEEEE
Confidence 1 288999999999999995543332 3566889999999999888886443
No 417
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=66.14 E-value=19 Score=35.54 Aligned_cols=115 Identities=17% Similarity=0.141 Sum_probs=72.2
Q ss_pred chHHHHHHHHHHcCCCEEE---ecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCC
Q 022982 101 SAFKEYVEDCKQVGFDTIE---LNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IE---ISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 177 (289)
+.+.+-+.++-.=|.|.|- .=...--+|.++|.+++..+.+. +..|-|.+-.. ..-+
T Consensus 141 ~~~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~---a~~eTG~~~~y-----------~~Ni------ 200 (364)
T cd08210 141 AELAELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAE---ANAETGGRTLY-----------APNV------ 200 (364)
T ss_pred HHHHHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHH---HHhhcCCcceE-----------EEec------
Confidence 3555666677788999994 33344578999999998888772 11122221100 0001
Q ss_pred ccccccHHHHHHHHHHHHHccCcEEEEecc--c------cccCCC-------------------CccH-HHHHHHHhccC
Q 022982 178 TEYVEDVDLLIRRAERCLEAGADMIMIDSD--D------VCKHAD-------------------SLRA-DIIAKVIGRLG 229 (289)
Q Consensus 178 ~~~~~~~~~~I~~~~~dLeAGA~~ViiEar--G------I~d~~G-------------------~~r~-d~v~~ii~~l~ 229 (289)
+.+.++++++++...++||+.||+--- | +.++.+ .+.. -++.++..-.|
T Consensus 201 ---ta~~~em~~ra~~a~~~Ga~~vMv~~~~~G~~~~~~l~~~~~~l~i~aHra~~ga~~~~~~~is~~~~~~kl~RlaG 277 (364)
T cd08210 201 ---TGPPTQLLERARFAKEAGAGGVLIAPGLTGLDTFRELAEDFDFLPILAHPAFAGAFVSSGDGISHALLFGTLFRLAG 277 (364)
T ss_pred ---CCCHHHHHHHHHHHHHcCCCEEEeecccchHHHHHHHHhcCCCcEEEEccccccccccCCCcccHHHHHHHHHHHhC
Confidence 124679999999999999999999863 2 222211 0222 24778888788
Q ss_pred CCceEEecC
Q 022982 230 LEKTMFEAT 238 (289)
Q Consensus 230 ~eklifEAP 238 (289)
.+-+++=.|
T Consensus 278 ad~~~~~~~ 286 (364)
T cd08210 278 ADAVIFPNY 286 (364)
T ss_pred CCEEEeCCC
Confidence 888887444
No 418
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=65.75 E-value=31 Score=31.30 Aligned_cols=94 Identities=13% Similarity=0.112 Sum_probs=57.5
Q ss_pred HHhhcccccEEEecCccc-cccC-------hhHHHHHHHHHHhCCceecC--CcHHH-HHH--HhCCch----HHHHHHH
Q 022982 47 FESMGQFVDGLKFSGGSH-SLMP-------KPFIEEVVKRAHQHDVYVST--GDWAE-HLI--RNGPSA----FKEYVED 109 (289)
Q Consensus 47 Le~ag~yID~lKfg~GTs-~l~p-------~~~l~eKI~l~~~~gV~v~~--GtlfE-~a~--~qg~~~----~~~yl~~ 109 (289)
|....+.+|++=+ |+.. .+.. .+..++.|..+|+.|++|.. |++.. ..+ ...+.. ++.-++.
T Consensus 21 l~~~pds~D~v~l-f~~~~~~~~~~~~~~~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~~~~~~~~~~~~fa~~l~~~ 99 (255)
T cd06542 21 LLNLPDSVDMVSL-FAANINLDAATAVQFLLTNKETYIRPLQAKGTKVLLSILGNHLGAGFANNLSDAAAKAYAKAIVDT 99 (255)
T ss_pred cccCCCcceEEEE-cccccCcccccchhhhhHHHHHHHHHHhhCCCEEEEEECCCCCCCCccccCCHHHHHHHHHHHHHH
Confidence 3345688899877 5543 2221 36788999999999998863 54321 111 111112 4556677
Q ss_pred HHHcCCCEEEecCCccc--------CChhHHHHHHHHHHH
Q 022982 110 CKQVGFDTIELNVGSLE--------IPEETLLRYVRLVKS 141 (289)
Q Consensus 110 ~k~lGF~~IEISdGti~--------i~~~~r~~lI~~~~~ 141 (289)
|++.|||.|-|.--... -..+....+|+.+++
T Consensus 100 v~~yglDGiDiD~E~~~~~~~~~~~~~~~~~~~lv~~Lr~ 139 (255)
T cd06542 100 VDKYGLDGVDFDDEYSGYGKNGTSQPSNEAFVRLIKELRK 139 (255)
T ss_pred HHHhCCCceEEeeeecccCCCCCCcchHHHHHHHHHHHHH
Confidence 88999999988543221 133556677777766
No 419
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=65.72 E-value=50 Score=30.28 Aligned_cols=88 Identities=7% Similarity=0.112 Sum_probs=53.4
Q ss_pred cCCCEEEecCCcccC-ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHH
Q 022982 113 VGFDTIELNVGSLEI-PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRA 191 (289)
Q Consensus 113 lGF~~IEISdGti~i-~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~ 191 (289)
.|++.+=|=|=.-.. ....-..+|+++.+. +.+-++-+ |.+.+ .+.+
T Consensus 44 ~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~-----~~~pi~vG------------GGIrs---------------~e~v 91 (234)
T PRK13587 44 ECVNRIHIVDLIGAKAQHAREFDYIKSLRRL-----TTKDIEVG------------GGIRT---------------KSQI 91 (234)
T ss_pred cCCCEEEEEECcccccCCcchHHHHHHHHhh-----cCCeEEEc------------CCcCC---------------HHHH
Confidence 589988887765543 444556788888772 11112111 11111 6788
Q ss_pred HHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecCC
Q 022982 192 ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATN 239 (289)
Q Consensus 192 ~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklifEAP~ 239 (289)
++.|++||++|++=+.-+. +.++++++.+++| ++++.--..
T Consensus 92 ~~~l~~Ga~kvvigt~a~~------~~~~l~~~~~~fg-~~ivvslD~ 132 (234)
T PRK13587 92 MDYFAAGINYCIVGTKGIQ------DTDWLKEMAHTFP-GRIYLSVDA 132 (234)
T ss_pred HHHHHCCCCEEEECchHhc------CHHHHHHHHHHcC-CCEEEEEEe
Confidence 9999999999998654222 2556666666665 556554443
No 420
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=65.68 E-value=60 Score=30.02 Aligned_cols=90 Identities=14% Similarity=0.240 Sum_probs=61.2
Q ss_pred chhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhC----------C--ceecCCcHHHHHHHhCCchHHHH
Q 022982 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH----------D--VYVSTGDWAEHLIRNGPSAFKEY 106 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~----------g--V~v~~GtlfE~a~~qg~~~~~~y 106 (289)
.....+.+|+...+ |+-.||.++..++.+++-.+.+-+. | ..+.+.||-| +.- ...++
T Consensus 85 s~e~~~~~l~~Ga~-----~vvigT~a~~~p~~~~~~~~~~g~~ivvslD~k~~g~~~~v~~~Gw~~---~~~--~~~~~ 154 (243)
T TIGR01919 85 DDSSLRAALTGGRA-----RVNGGTAALENPWWAAAVIRYGGDIVAVGLDVLEDGEWHTLGNRGWSD---GGG--DLEVL 154 (243)
T ss_pred CHHHHHHHHHcCCC-----EEEECchhhCCHHHHHHHHHHccccEEEEEEEecCCceEEEECCCeec---CCC--cHHHH
Confidence 55666668886555 4577999999999888876665221 1 1333456755 333 78999
Q ss_pred HHHHHHcCCCEEEe----cCCcccCChhHHHHHHHHHHH
Q 022982 107 VEDCKQVGFDTIEL----NVGSLEIPEETLLRYVRLVKS 141 (289)
Q Consensus 107 l~~~k~lGF~~IEI----SdGti~i~~~~r~~lI~~~~~ 141 (289)
++++.++|+..|=+ .||+..=|+-+. ++++++
T Consensus 155 ~~~~~~~g~~~ii~tdI~~dGt~~G~d~~l---~~~l~~ 190 (243)
T TIGR01919 155 ERLLDSGGCSRVVVTDSKKDGLSGGPNELL---LEVVAA 190 (243)
T ss_pred HHHHHhCCCCEEEEEecCCcccCCCcCHHH---HHHHHh
Confidence 99999999988876 368877666554 444444
No 421
>PTZ00331 alpha/beta hydrolase; Provisional
Probab=65.57 E-value=14 Score=33.19 Aligned_cols=64 Identities=17% Similarity=0.162 Sum_probs=52.4
Q ss_pred HHHHhCCc-eecC-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccc
Q 022982 77 KRAHQHDV-YVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAK 147 (289)
Q Consensus 77 ~l~~~~gV-~v~~-GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~ 147 (289)
++++++|| .++- |-..++|+.+- . ..+.++||+.+=++|++-..+.+.....++.++..|-++.
T Consensus 139 ~~L~~~gi~~lvi~G~~t~~CV~~T--a-----~~a~~~g~~v~vv~Da~~~~~~~~~~~al~~~~~~g~~v~ 204 (212)
T PTZ00331 139 QILKAHGVRRVFICGLAFDFCVLFT--A-----LDAVKLGFKVVVLEDATRAVDPDAISKQRAELLEAGVILL 204 (212)
T ss_pred HHHHHCCCCEEEEEEeccCHHHHHH--H-----HHHHHCCCEEEEeCcCccCCCHHHHHHHHHHHHHCCCEEE
Confidence 45678999 5555 66889998884 2 4466899999999999999999999999999999876543
No 422
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=65.42 E-value=30 Score=32.79 Aligned_cols=117 Identities=16% Similarity=0.276 Sum_probs=71.7
Q ss_pred HHHcCCCEEEecCC----------cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcc
Q 022982 110 CKQVGFDTIELNVG----------SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTE 179 (289)
Q Consensus 110 ~k~lGF~~IEISdG----------ti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~ 179 (289)
+.+.|||+|=+.|. +..++.++.+..++.+.+. -.. |=+-. |-.|+.+
T Consensus 31 ~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~-~~~-p~vva-----------D~pfg~y--------- 88 (264)
T PRK00311 31 FDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARG-APR-ALVVA-----------DMPFGSY--------- 88 (264)
T ss_pred HHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhc-CCC-CcEEE-----------eCCCCCc---------
Confidence 34569999976543 4578899999988888772 110 00101 1112111
Q ss_pred ccccHHHHHHHHHHHHH-ccCcEEEEecc-------------c--------c----------ccCCCCccHHHHHHHH--
Q 022982 180 YVEDVDLLIRRAERCLE-AGADMIMIDSD-------------D--------V----------CKHADSLRADIIAKVI-- 225 (289)
Q Consensus 180 ~~~~~~~~I~~~~~dLe-AGA~~ViiEar-------------G--------I----------~d~~G~~r~d~v~~ii-- 225 (289)
-.++++.++.+.+.++ +||+.|-||.- | | |.-.|+ ..+..++++
T Consensus 89 -~~~~~~av~~a~r~~~~aGa~aVkiEdg~~~~~~I~al~~agIpV~gHiGL~pq~~~~~gg~~i~gr-t~~~a~~~i~r 166 (264)
T PRK00311 89 -QASPEQALRNAGRLMKEAGAHAVKLEGGEEVAETIKRLVERGIPVMGHLGLTPQSVNVLGGYKVQGR-DEEAAEKLLED 166 (264)
T ss_pred -cCCHHHHHHHHHHHHHHhCCeEEEEcCcHHHHHHHHHHHHCCCCEeeeecccceeecccCCeeeecC-CHHHHHHHHHH
Confidence 1258888999999999 99999999983 2 1 111222 122234443
Q ss_pred ----hccCCCceEEecCCchhHHHHHHHh
Q 022982 226 ----GRLGLEKTMFEATNPRTSEWFIRRY 250 (289)
Q Consensus 226 ----~~l~~eklifEAP~k~qQ~~~I~~f 250 (289)
...|.+-|..|++..++-..+-++.
T Consensus 167 a~a~~eAGA~~i~lE~v~~~~~~~i~~~l 195 (264)
T PRK00311 167 AKALEEAGAFALVLECVPAELAKEITEAL 195 (264)
T ss_pred HHHHHHCCCCEEEEcCCCHHHHHHHHHhC
Confidence 4678999999999665555554544
No 423
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=65.30 E-value=48 Score=31.76 Aligned_cols=82 Identities=17% Similarity=0.275 Sum_probs=47.6
Q ss_pred HHHHHHcCCCEEEecCCc--------ccC----------ChhHHHH----HHHHHHHcCCcccceeeeecCCCCCCCccc
Q 022982 107 VEDCKQVGFDTIELNVGS--------LEI----------PEETLLR----YVRLVKSAGLKAKPKFAVMFNKSDIPSDRD 164 (289)
Q Consensus 107 l~~~k~lGF~~IEISdGt--------i~i----------~~~~r~~----lI~~~~~~G~~v~~E~g~k~~~~evg~~~d 164 (289)
-+.|++.|||.|||.-|- -+. +.+.|.| +|+.+++. .-.-..++++....+.
T Consensus 155 A~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~a-vG~d~~v~vris~~~~----- 228 (338)
T cd04733 155 ARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAA-VGPGFPVGIKLNSADF----- 228 (338)
T ss_pred HHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHH-cCCCCeEEEEEcHHHc-----
Confidence 346778899999998773 122 2345555 55556553 0000124554421110
Q ss_pred cccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEecc
Q 022982 165 RAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
.+..| |+++.++.++.--++|+++|-|=++
T Consensus 229 -------~~~g~------~~eea~~ia~~Le~~Gvd~iev~~g 258 (338)
T cd04733 229 -------QRGGF------TEEDALEVVEALEEAGVDLVELSGG 258 (338)
T ss_pred -------CCCCC------CHHHHHHHHHHHHHcCCCEEEecCC
Confidence 01123 5778888888888899999877443
No 424
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=65.28 E-value=11 Score=37.13 Aligned_cols=107 Identities=17% Similarity=0.339 Sum_probs=0.0
Q ss_pred EEecCccccccChhHH----------------HHHHHHHHhCCceecC--CcHH---------------------HHHHH
Q 022982 57 LKFSGGSHSLMPKPFI----------------EEVVKRAHQHDVYVST--GDWA---------------------EHLIR 97 (289)
Q Consensus 57 lKfg~GTs~l~p~~~l----------------~eKI~l~~~~gV~v~~--Gtlf---------------------E~a~~ 97 (289)
++.|| ||..++-..| ++-+++||.+||.|-. |..- +..++
T Consensus 95 i~~Gf-tSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VEaELG~vgg~e~~~~g~~~~~~~~~~~~~~~~~T 173 (347)
T PRK09196 95 IQLGF-TSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVEGELGCLGSLETGMGGEEDGHGAEGKLSHDQLLT 173 (347)
T ss_pred HHcCC-CEEEecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCccccccccccCcccccccchhhcCC
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecCCcc------cCChh---HHHHHHHHHHHcCCcccceee----eecCCCCC-----
Q 022982 98 NGPSAFKEYVEDCKQVGFDTIELNVGSL------EIPEE---TLLRYVRLVKSAGLKAKPKFA----VMFNKSDI----- 159 (289)
Q Consensus 98 qg~~~~~~yl~~~k~lGF~~IEISdGti------~i~~~---~r~~lI~~~~~~G~~v~~E~g----~k~~~~ev----- 159 (289)
.- ++-.+.+++.|.|++=||-||. ...+. -....++.+++ .+. |..+.|.+
T Consensus 174 ~P----eeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~-------~v~~vPLVLHGgSG~~~~~~ 242 (347)
T PRK09196 174 DP----EEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHA-------RLPNTHLVMHGSSSVPQELL 242 (347)
T ss_pred CH----HHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHh-------cCCCCCEEEeCCCCCCHHHH
Q ss_pred ----------------CCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEE
Q 022982 160 ----------------PSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMI 202 (289)
Q Consensus 160 ----------------g~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~V 202 (289)
+ -+++++.++.|..+|
T Consensus 243 ~~~~~~g~~~~~~~G~~---------------------------~e~i~~ai~~GI~KI 274 (347)
T PRK09196 243 DIINEYGGDMPETYGVP---------------------------VEEIQEGIKHGVRKV 274 (347)
T ss_pred HHHHHhcCCccccCCCC---------------------------HHHHHHHHHCCCceE
No 425
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=65.23 E-value=18 Score=38.75 Aligned_cols=123 Identities=15% Similarity=0.215 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHhC---C----ceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCC------hhHHHHHH
Q 022982 70 PFIEEVVKRAHQH---D----VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP------EETLLRYV 136 (289)
Q Consensus 70 ~~l~eKI~l~~~~---g----V~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~------~~~r~~lI 136 (289)
..+.|.++..++. + |++++.+|.+--+.. +..-++.+.+.+.|.|.|+||.|...-. ..-...+.
T Consensus 602 r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~--~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~ 679 (765)
T PRK08255 602 RYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTP--DDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFA 679 (765)
T ss_pred HHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCH--HHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHH
Confidence 4566777777763 3 355554555421111 1233566777788999999998864311 01113344
Q ss_pred HHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHcc-CcEEEEeccccccCCCC
Q 022982 137 RLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG-ADMIMIDSDDVCKHADS 215 (289)
Q Consensus 137 ~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAG-A~~ViiEarGI~d~~G~ 215 (289)
+.+|+. +++. ..-+| .+.+ .+.+++.|+.| ||.|++ +|++.-+
T Consensus 680 ~~ik~~-------~~~p--v~~~G--------~i~~---------------~~~a~~~l~~g~~D~v~~-gR~~l~d--- 723 (765)
T PRK08255 680 DRIRNE-------AGIA--TIAVG--------AISE---------------ADHVNSIIAAGRADLCAL-ARPHLAD--- 723 (765)
T ss_pred HHHHHH-------cCCE--EEEeC--------CCCC---------------HHHHHHHHHcCCcceeeE-cHHHHhC---
Confidence 445552 2221 11111 1111 45677777766 899887 5653321
Q ss_pred ccHHHHHHHHhccCCCc
Q 022982 216 LRADIIAKVIGRLGLEK 232 (289)
Q Consensus 216 ~r~d~v~~ii~~l~~ek 232 (289)
++.+.+.+.+++.+.
T Consensus 724 --P~~~~~~~~~~~~~~ 738 (765)
T PRK08255 724 --PAWTLHEAAEIGYRD 738 (765)
T ss_pred --ccHHHHHHHHcCCCC
Confidence 346666777777653
No 426
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=65.02 E-value=27 Score=32.06 Aligned_cols=146 Identities=14% Similarity=0.098 Sum_probs=81.6
Q ss_pred CCCCCCceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccC--hhHHHHHHHHHHh--CCc--eecCCcHHH
Q 022982 20 KPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMP--KPFIEEVVKRAHQ--HDV--YVSTGDWAE 93 (289)
Q Consensus 20 KPR~~GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p--~~~l~eKI~l~~~--~gV--~v~~GtlfE 93 (289)
+....-+.-|++--++..++..-....-+...+|.|-+-+-.--+++.. -+.+.+-|...++ +++ ++ -+|
T Consensus 54 ~~~~v~v~tVigFP~G~~~~~~K~~e~~~Ai~~GA~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKv----IlE 129 (221)
T PRK00507 54 KGSDVKVCTVIGFPLGANTTAVKAFEAKDAIANGADEIDMVINIGALKSGDWDAVEADIRAVVEAAGGAVLKV----IIE 129 (221)
T ss_pred CCCCCeEEEEecccCCCChHHHHHHHHHHHHHcCCceEeeeccHHHhcCCCHHHHHHHHHHHHHhcCCceEEE----Eee
Confidence 3344567777765553333333333444455566666665555444544 3445555555444 232 22 245
Q ss_pred HHHHhCCchHHHHHHHHHHcCCCEEEecCCccc--CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 022982 94 HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE--IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (289)
Q Consensus 94 ~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~--i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~ 171 (289)
..+... +.+.+-.+.|.+.|.|.|--|.|+.. -+.++ .+++++... ..+++|-.+ .+.
T Consensus 130 t~~L~~-e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~-v~~m~~~~~------~~~~IKasG------------GIr 189 (221)
T PRK00507 130 TCLLTD-EEKVKACEIAKEAGADFVKTSTGFSTGGATVED-VKLMRETVG------PRVGVKASG------------GIR 189 (221)
T ss_pred cCcCCH-HHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHH-HHHHHHHhC------CCceEEeeC------------CcC
Confidence 554432 35677888999999999999999853 22333 233333322 346665321 111
Q ss_pred ccCCCCccccccHHHHHHHHHHHHHccCcEEEE
Q 022982 172 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 204 (289)
Q Consensus 172 ~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~Vii 204 (289)
+ .+++.+.++|||+.|=+
T Consensus 190 t---------------~~~a~~~i~aGA~riGt 207 (221)
T PRK00507 190 T---------------LEDALAMIEAGATRLGT 207 (221)
T ss_pred C---------------HHHHHHHHHcCcceEcc
Confidence 1 57788889999998844
No 427
>PRK08323 phenylhydantoinase; Validated
Probab=64.80 E-value=84 Score=30.82 Aligned_cols=97 Identities=10% Similarity=0.102 Sum_probs=63.6
Q ss_pred ccccEEEecCc--cccccChhHHHHHHHHHHhCCceecC--Cc--HHHHH----HHhCC----------------chHHH
Q 022982 52 QFVDGLKFSGG--SHSLMPKPFIEEVVKRAHQHDVYVST--GD--WAEHL----IRNGP----------------SAFKE 105 (289)
Q Consensus 52 ~yID~lKfg~G--Ts~l~p~~~l~eKI~l~~~~gV~v~~--Gt--lfE~a----~~qg~----------------~~~~~ 105 (289)
..++.+|+..+ .....+.+.|++-++.++++|+.+.. -+ ..+.+ ...|. ..+++
T Consensus 140 ~g~~~ik~~~~~~~~~~~s~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~ 219 (459)
T PRK08323 140 EGITSFKLFMAYKGALMLDDDELLRALQRAAELGALPMVHAENGDAIAYLQAKLLAEGKTGPEYHALSRPPEVEGEATNR 219 (459)
T ss_pred cCCCEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCChhhhhccCCHHHHHHHHHH
Confidence 44577887643 33456677899999999999987653 22 22211 11121 13445
Q ss_pred HHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeee
Q 022982 106 YVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVM 153 (289)
Q Consensus 106 yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k 153 (289)
-++.++.+|.... | .-++.++-.++|+.+++.|..|..|+...
T Consensus 220 ~~~~a~~~~~~~~-i----~H~s~~~~~~~i~~ak~~g~~vt~e~~p~ 262 (459)
T PRK08323 220 AIMLAELAGAPLY-I----VHVSCKEALEAIRRARARGQRVFGETCPQ 262 (459)
T ss_pred HHHHHHHhCCCEE-E----EeCCCHHHHHHHHHHHHCCCeEEEEcCcc
Confidence 5778888886654 2 55666777899999999998877666553
No 428
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=64.70 E-value=19 Score=34.55 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=18.9
Q ss_pred HHHHHHHHHHcCCCEEEecCCcc
Q 022982 103 FKEYVEDCKQVGFDTIELNVGSL 125 (289)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti 125 (289)
.-++.+.+.+.|+|+||||.|+.
T Consensus 238 a~~ia~~Le~~Gvd~iev~~g~~ 260 (338)
T cd04733 238 ALEVVEALEEAGVDLVELSGGTY 260 (338)
T ss_pred HHHHHHHHHHcCCCEEEecCCCC
Confidence 44667777888999999999975
No 429
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=64.67 E-value=32 Score=32.93 Aligned_cols=99 Identities=24% Similarity=0.346 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhCCceecC--CcH--------HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc--------cCChhHH
Q 022982 71 FIEEVVKRAHQHDVYVST--GDW--------AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL--------EIPEETL 132 (289)
Q Consensus 71 ~l~eKI~l~~~~gV~v~~--Gtl--------fE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti--------~i~~~~r 132 (289)
.-|+-+++||.+||.|-. |.. .+..+.. ..++-.+.+++.|.|++-||-||. .|..+ |
T Consensus 119 ~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT---~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~-~ 194 (285)
T PRK07709 119 TTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYA---DPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFA-E 194 (285)
T ss_pred HHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCC---CHHHHHHHHHHhCCCEEEEeecccccCcCCCCccCHH-H
Confidence 457899999999997753 421 1111122 355666666777999999999987 34443 2
Q ss_pred HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEecc
Q 022982 133 LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 133 ~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
++-|+..-+ .| -|-.+.|.++ -+++++.++.|..+|=|-.+
T Consensus 195 L~~I~~~~~-----iP--LVLHGgSG~~---------------------------~e~~~~ai~~Gi~KiNi~T~ 235 (285)
T PRK07709 195 MEQVRDFTG-----VP--LVLHGGTGIP---------------------------TADIEKAISLGTSKINVNTE 235 (285)
T ss_pred HHHHHHHHC-----CC--EEEeCCCCCC---------------------------HHHHHHHHHcCCeEEEeChH
Confidence 233333221 22 2445544332 36778889999999977664
No 430
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=64.58 E-value=32 Score=31.91 Aligned_cols=17 Identities=41% Similarity=0.616 Sum_probs=15.0
Q ss_pred HHHHHHHHHccCcEEEE
Q 022982 188 IRRAERCLEAGADMIMI 204 (289)
Q Consensus 188 I~~~~~dLeAGA~~Vii 204 (289)
.+++++-+++|||.|++
T Consensus 191 ~e~a~~l~~aGAD~VVV 207 (223)
T TIGR01768 191 VEKAREMAEAGADTIVT 207 (223)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 47788889999999999
No 431
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=64.54 E-value=8.1 Score=37.23 Aligned_cols=92 Identities=21% Similarity=0.368 Sum_probs=49.3
Q ss_pred cccccEEEecCccccccChhHHHHHHHHHHhCCceec-----C-C---cHHHHHHHhCCc----hHHHHHHHHHHcCCCE
Q 022982 51 GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS-----T-G---DWAEHLIRNGPS----AFKEYVEDCKQVGFDT 117 (289)
Q Consensus 51 g~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~-----~-G---tlfE~a~~qg~~----~~~~yl~~~k~lGF~~ 117 (289)
=+|||..=. |.-..+..+. -.-|+.||+|||+|. . | .|++.++.++.+ -+++.++.|+-+|||.
T Consensus 26 W~yiD~fvy-wsh~~i~iP~--~~widaAHrnGV~vLGTiife~~~~~~~~~~ll~~~~~g~~~~A~kLi~ia~~yGFDG 102 (311)
T PF03644_consen 26 WQYIDIFVY-WSHGLITIPP--AGWIDAAHRNGVKVLGTIIFEWGGGAEWCEELLEKDEDGSFPYADKLIEIAKYYGFDG 102 (311)
T ss_dssp GGG-SEEEE-T-TBSSE-----HHHHHHHHHTT--EEEEEEEEEE--HHHHHHHT---TTS--HHHHHHHHHHHHHT--E
T ss_pred ccceeeEee-cccccccCCC--chhHHHHHhcCceEEEEEEecCCchHHHHHHHHcCCcccccHHHHHHHHHHHHcCCCc
Confidence 368887543 5444444221 357899999999885 2 2 388888885422 2789999999999998
Q ss_pred EEecCCccc---CChhHHHHHHHHHHHcCCc
Q 022982 118 IELNVGSLE---IPEETLLRYVRLVKSAGLK 145 (289)
Q Consensus 118 IEISdGti~---i~~~~r~~lI~~~~~~G~~ 145 (289)
.=|+--+-- -..+.....++.+++..-+
T Consensus 103 w~iN~E~~~~~~~~~~~l~~F~~~l~~~~~~ 133 (311)
T PF03644_consen 103 WLINIETPLSGPEDAENLIDFLKYLRKEAHE 133 (311)
T ss_dssp EEEEEEESSTTGGGHHHHHHHHHHHHHHHHH
T ss_pred eEEEecccCCchhHHHHHHHHHHHHHHHhhc
Confidence 544322211 1234445566666554333
No 432
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=64.51 E-value=8.1 Score=36.40 Aligned_cols=47 Identities=19% Similarity=0.290 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc--cCChhHHHH-HHHHHHHcCCcccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSL--EIPEETLLR-YVRLVKSAGLKAKP 148 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti--~i~~~~r~~-lI~~~~~~G~~v~~ 148 (289)
.+++|+..||++||+.|||-|.-- +|....-.. +-..+.+.|+...+
T Consensus 18 ~v~affa~ak~lg~s~VeiRndl~~~~I~dg~p~a~vka~Aek~Gl~IvS 67 (272)
T COG4130 18 SVEAFFALAKRLGLSKVEIRNDLPSNAIADGTPAAEVKALAEKAGLTIVS 67 (272)
T ss_pred CHHHHHHHHHHcCcceeEEecCCCcccccCCCCHHHHHHHHHHcCcEEEE
Confidence 699999999999999999977543 333332222 33345666776444
No 433
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=64.35 E-value=25 Score=29.81 Aligned_cols=94 Identities=17% Similarity=0.240 Sum_probs=59.3
Q ss_pred chhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCcee-cCCcHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022982 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV-STGDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v-~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (289)
|...+.-+|+.+|--+=+ +|- =.| ..+.++.+.++++.+ ..-...- +....+.+.++.+++.|+..
T Consensus 19 G~~iv~~~lr~~G~eVi~--LG~----~vp---~e~i~~~a~~~~~d~V~lS~~~~----~~~~~~~~~~~~L~~~~~~~ 85 (137)
T PRK02261 19 GNKILDRALTEAGFEVIN--LGV----MTS---QEEFIDAAIETDADAILVSSLYG----HGEIDCRGLREKCIEAGLGD 85 (137)
T ss_pred HHHHHHHHHHHCCCEEEE--CCC----CCC---HHHHHHHHHHcCCCEEEEcCccc----cCHHHHHHHHHHHHhcCCCC
Confidence 556777788877754433 332 123 556666777777633 2111111 11125677888889998854
Q ss_pred EE-ecCCcccCChhHHHHHHHHHHHcCCc
Q 022982 118 IE-LNVGSLEIPEETLLRYVRLVKSAGLK 145 (289)
Q Consensus 118 IE-ISdGti~i~~~~r~~lI~~~~~~G~~ 145 (289)
+- +=-|.+..+..++...++++++.||.
T Consensus 86 ~~i~vGG~~~~~~~~~~~~~~~l~~~G~~ 114 (137)
T PRK02261 86 ILLYVGGNLVVGKHDFEEVEKKFKEMGFD 114 (137)
T ss_pred CeEEEECCCCCCccChHHHHHHHHHcCCC
Confidence 43 45677888888888889999998765
No 434
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=64.35 E-value=67 Score=28.59 Aligned_cols=103 Identities=17% Similarity=0.235 Sum_probs=54.2
Q ss_pred CceeEecCCCCCCCchhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceec---------CCcHHHHH
Q 022982 25 GVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS---------TGDWAEHL 95 (289)
Q Consensus 25 GlT~V~DkGl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~---------~GtlfE~a 95 (289)
++...++=|. . ....++.+++...+.| =.||.++-+++.+++..+-+....|.++ .-+|-|..
T Consensus 72 ~~pi~~ggGI--~-~~ed~~~~~~~Ga~~v-----vlgs~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~ 143 (230)
T TIGR00007 72 GVPVQVGGGI--R-SLEDVEKLLDLGVDRV-----IIGTAAVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKS 143 (230)
T ss_pred CCCEEEeCCc--C-CHHHHHHHHHcCCCEE-----EEChHHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccC
Confidence 4445554444 3 4556666666544443 3677777776666655554432234432 11232221
Q ss_pred HHhCCchHHHHHHHHHHcCCCEEEec----CCcccCChhHHHHHHHHHHHc
Q 022982 96 IRNGPSAFKEYVEDCKQVGFDTIELN----VGSLEIPEETLLRYVRLVKSA 142 (289)
Q Consensus 96 ~~qg~~~~~~yl~~~k~lGF~~IEIS----dGti~i~~~~r~~lI~~~~~~ 142 (289)
+....+..+.+.+.|++.+=+- +|+.. .. -.++++++++.
T Consensus 144 ----~~~~~~~~~~~~~~g~~~ii~~~~~~~g~~~-g~--~~~~i~~i~~~ 187 (230)
T TIGR00007 144 ----EVSLEELAKRLEELGLEGIIYTDISRDGTLS-GP--NFELTKELVKA 187 (230)
T ss_pred ----CCCHHHHHHHHHhCCCCEEEEEeecCCCCcC-CC--CHHHHHHHHHh
Confidence 1245667788888998865532 33322 11 25667776663
No 435
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=64.30 E-value=9.3 Score=34.94 Aligned_cols=141 Identities=18% Similarity=0.154 Sum_probs=80.2
Q ss_pred CCCCceeEecCCCCCCCc---hhHHHHHHHhhcccccEEEe-cC---ccccccChhHHHHHHHHHHhCCceecCCcHHHH
Q 022982 22 RRFGVTEMRSPHYTLSSS---HNVLEDIFESMGQFVDGLKF-SG---GSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEH 94 (289)
Q Consensus 22 R~~GlT~V~DkGl~~~~g---~~~~~DlLe~ag~yID~lKf-g~---GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~ 94 (289)
...-+.-|++.-++-.+. ..+.++.++.-++=||++=. |+ |..-.. .+.+++-.+.++ |+++-- -+|.
T Consensus 52 ~~v~v~tVigFP~G~~~~~~K~~E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v-~~ei~~i~~~~~--g~~lKv--IlE~ 126 (211)
T TIGR00126 52 TEVRICTVVGFPLGASTTDVKLYETKEAIKYGADEVDMVINIGALKDGNEEVV-YDDIRAVVEACA--GVLLKV--IIET 126 (211)
T ss_pred CCCeEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCEEEeecchHhhhCCcHHHH-HHHHHHHHHHcC--CCeEEE--EEec
Confidence 345666777555422210 34667778877788887633 32 222211 123555556664 543221 3444
Q ss_pred HHHhCCchHHHHHHHHHHcCCCEEEecCCccc--CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccc
Q 022982 95 LIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE--IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVA 172 (289)
Q Consensus 95 a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~--i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~ 172 (289)
++..+ +.+..-.+.|.+.|-|.|-.|.|+.. -+.++ .++++++... .+++|-.+ +-+ +
T Consensus 127 ~~L~~-~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~d-v~~m~~~v~~------~v~IKaaG------Gir------t 186 (211)
T TIGR00126 127 GLLTD-EEIRKACEICIDAGADFVKTSTGFGAGGATVED-VRLMRNTVGD------TIGVKASG------GVR------T 186 (211)
T ss_pred CCCCH-HHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHH-HHHHHHHhcc------CCeEEEeC------CCC------C
Confidence 44332 35667888999999999999999862 22233 2444444332 46676432 111 1
Q ss_pred cCCCCccccccHHHHHHHHHHHHHccCcEE
Q 022982 173 RAPRSTEYVEDVDLLIRRAERCLEAGADMI 202 (289)
Q Consensus 173 ~~~~~~~~~~~~~~~I~~~~~dLeAGA~~V 202 (289)
.+++.+.++|||+.+
T Consensus 187 ---------------~~~a~~~i~aGa~ri 201 (211)
T TIGR00126 187 ---------------AEDAIAMIEAGASRI 201 (211)
T ss_pred ---------------HHHHHHHHHHhhHHh
Confidence 477888889999865
No 436
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=64.16 E-value=33 Score=31.23 Aligned_cols=109 Identities=12% Similarity=0.065 Sum_probs=65.3
Q ss_pred hhHHHHHHHhhc-ccccEEEecCcccc------ccChhHHHHHHHHHHhCCceecCC--cH---H------HHHHHhCCc
Q 022982 40 HNVLEDIFESMG-QFVDGLKFSGGSHS------LMPKPFIEEVVKRAHQHDVYVSTG--DW---A------EHLIRNGPS 101 (289)
Q Consensus 40 ~~~~~DlLe~ag-~yID~lKfg~GTs~------l~p~~~l~eKI~l~~~~gV~v~~G--tl---f------E~a~~qg~~ 101 (289)
+.+.=+.+..+| ++|++. .+... =++++.+++.-++++++|+.++.. +. + +..-.+.-+
T Consensus 23 ~~e~~~~~~~~G~~~iEl~---~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~r~~~~~ 99 (283)
T PRK13209 23 WLEKLAIAKTAGFDFVEMS---VDESDERLARLDWSREQRLALVNALVETGFRVNSMCLSAHRRFPLGSEDDAVRAQALE 99 (283)
T ss_pred HHHHHHHHHHcCCCeEEEe---cCccccchhccCCCHHHHHHHHHHHHHcCCceeEEecccccccCCCCCCHHHHHHHHH
Confidence 335555556666 677763 22111 124556889999999999987531 11 1 111111112
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc--CC-h-------hHHHHHHHHHHHcCCcccceee
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLE--IP-E-------ETLLRYVRLVKSAGLKAKPKFA 151 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~--i~-~-------~~r~~lI~~~~~~G~~v~~E~g 151 (289)
.+++.++.|+++|.++|=+..+... .+ + +...++.+.+++.|.++.-|..
T Consensus 100 ~~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~ 159 (283)
T PRK13209 100 IMRKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELASRASVTLAFEIM 159 (283)
T ss_pred HHHHHHHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeec
Confidence 5889999999999999987644321 12 1 2235577888888887666654
No 437
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=64.02 E-value=36 Score=32.64 Aligned_cols=103 Identities=18% Similarity=0.228 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhCCceec--CCcH--------HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCC---hhHHHHHHH
Q 022982 71 FIEEVVKRAHQHDVYVS--TGDW--------AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP---EETLLRYVR 137 (289)
Q Consensus 71 ~l~eKI~l~~~~gV~v~--~Gtl--------fE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~---~~~r~~lI~ 137 (289)
..++-+++||.+||.|- .|.. .+..+.. ..++-.+.+++.|.|++-||-||.-=. +.....+++
T Consensus 116 ~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T---~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~ 192 (283)
T PRK07998 116 FTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKT---EPEKVKDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLK 192 (283)
T ss_pred HHHHHHHHHHHcCCEEEEEeccCCCccccccccccccC---CHHHHHHHHHHhCcCeeehhccccccCCCCCCcCHHHHH
Confidence 46788999999999772 2311 1112222 355667777888999999999995211 111123333
Q ss_pred HHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEecc
Q 022982 138 LVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 138 ~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
.+++. .-.| -|-.+.|.++ -+++++.+++|+.+|=|-.+
T Consensus 193 ~I~~~--~~vP--LVlHGgSG~~---------------------------~e~~~~ai~~Gi~KiNi~Te 231 (283)
T PRK07998 193 RIAEV--SPVP--LVIHGGSGIP---------------------------PEILRSFVNYKVAKVNIASD 231 (283)
T ss_pred HHHhh--CCCC--EEEeCCCCCC---------------------------HHHHHHHHHcCCcEEEECHH
Confidence 33442 0112 2333333221 25568889999999988664
No 438
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=63.86 E-value=38 Score=29.71 Aligned_cols=22 Identities=23% Similarity=0.096 Sum_probs=16.5
Q ss_pred HHHHHHHHHccCcEEEEeccccc
Q 022982 188 IRRAERCLEAGADMIMIDSDDVC 210 (289)
Q Consensus 188 I~~~~~dLeAGA~~ViiEarGI~ 210 (289)
.+.+...+++||+.|-+=+ .||
T Consensus 154 ~~n~~~~~~~G~~~v~v~s-~i~ 175 (190)
T cd00452 154 LDNAAEWLAAGVVAVGGGS-LLP 175 (190)
T ss_pred HHHHHHHHHCCCEEEEEch-hcc
Confidence 4788889999999887633 344
No 439
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=63.57 E-value=17 Score=31.44 Aligned_cols=80 Identities=19% Similarity=0.181 Sum_probs=0.0
Q ss_pred CCCCceeEecC-CCCCCCchhHHHHHHHhhcccccEEEecCccccccC-----hhHHHHHHHHHHhCCceecCCcHHHHH
Q 022982 22 RRFGVTEMRSP-HYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMP-----KPFIEEVVKRAHQHDVYVSTGDWAEHL 95 (289)
Q Consensus 22 R~~GlT~V~Dk-Gl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~p-----~~~l~eKI~l~~~~gV~v~~GtlfE~a 95 (289)
|..|....+|- |. +...++-+.+.. +|++|+...-..-+. ...++..+.+++.+|+.+.-.+-
T Consensus 142 ~~~G~~l~ld~~g~----~~~~~~~l~~~~---~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gV---- 210 (240)
T cd01948 142 RALGVRIALDDFGT----GYSSLSYLKRLP---VDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEGV---- 210 (240)
T ss_pred HHCCCeEEEeCCCC----cHhhHHHHHhCC---CCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEec----
Q ss_pred HHhCCchHHHHHHHHHHcCCCEE
Q 022982 96 IRNGPSAFKEYVEDCKQVGFDTI 118 (289)
Q Consensus 96 ~~qg~~~~~~yl~~~k~lGF~~I 118 (289)
.-.+-++.|+++|++.+
T Consensus 211 ------e~~~~~~~~~~~gi~~~ 227 (240)
T cd01948 211 ------ETEEQLELLRELGCDYV 227 (240)
T ss_pred ------CCHHHHHHHHHcCCCee
No 440
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=63.45 E-value=10 Score=33.82 Aligned_cols=50 Identities=18% Similarity=0.222 Sum_probs=36.7
Q ss_pred HHHHHHHHHHcCCCEEEecC---------Ccc-----cC-----ChhHHHHHHHHHHHcCCcccceeee
Q 022982 103 FKEYVEDCKQVGFDTIELNV---------GSL-----EI-----PEETLLRYVRLVKSAGLKAKPKFAV 152 (289)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISd---------Gti-----~i-----~~~~r~~lI~~~~~~G~~v~~E~g~ 152 (289)
+.+=|+++++|||++|++|- |.- .+ +.++..++|+.+.++|++|.-.+-.
T Consensus 6 i~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~ 74 (316)
T PF00128_consen 6 IIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVP 74 (316)
T ss_dssp HHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred HHHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeec
Confidence 33446788889999999862 111 11 2478899999999999999877744
No 441
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=63.40 E-value=24 Score=30.56 Aligned_cols=79 Identities=18% Similarity=0.198 Sum_probs=48.5
Q ss_pred CCCCceeEecC-CCCCCCchhHHHHHHHhhcccccEEEecCcccccc-----ChhHHHHHHHHHHhCCceecC-CcHHHH
Q 022982 22 RRFGVTEMRSP-HYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLM-----PKPFIEEVVKRAHQHDVYVST-GDWAEH 94 (289)
Q Consensus 22 R~~GlT~V~Dk-Gl~~~~g~~~~~DlLe~ag~yID~lKfg~GTs~l~-----p~~~l~eKI~l~~~~gV~v~~-GtlfE~ 94 (289)
|..|....+|- |. |...++-+ ... -+|++|+...-..-. ....++..++++|++|+.+.- |
T Consensus 143 ~~~G~~ialddfg~----~~~~~~~l-~~l--~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~g----- 210 (241)
T smart00052 143 RELGVRIALDDFGT----GYSSLSYL-KRL--PVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEG----- 210 (241)
T ss_pred HHCCCEEEEeCCCC----cHHHHHHH-HhC--CCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEec-----
Confidence 55687777764 33 33343333 222 399999986533222 335788999999999997654 5
Q ss_pred HHHhCCchHHHHHHHHHHcCCCEE
Q 022982 95 LIRNGPSAFKEYVEDCKQVGFDTI 118 (289)
Q Consensus 95 a~~qg~~~~~~yl~~~k~lGF~~I 118 (289)
.. =++-++.|+++|++.+
T Consensus 211 --Ve----~~~~~~~l~~~Gi~~~ 228 (241)
T smart00052 211 --VE----TPEQLDLLRSLGCDYG 228 (241)
T ss_pred --CC----CHHHHHHHHHcCCCEE
Confidence 01 1234456677888776
No 442
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=63.09 E-value=16 Score=35.04 Aligned_cols=111 Identities=17% Similarity=0.156 Sum_probs=65.6
Q ss_pred cccChhHHHHHHHHHHhCCc-eecC-Cc-HHHHHHHhCCchHHHHHHHHHHcCCCEEEe-------------cCCcccCC
Q 022982 65 SLMPKPFIEEVVKRAHQHDV-YVST-GD-WAEHLIRNGPSAFKEYVEDCKQVGFDTIEL-------------NVGSLEIP 128 (289)
Q Consensus 65 ~l~p~~~l~eKI~l~~~~gV-~v~~-Gt-lfE~a~~qg~~~~~~yl~~~k~lGF~~IEI-------------SdGti~i~ 128 (289)
..++.+.+.+.++.+++.|+ .++. || ..+. ..+.+.+.++.+|+.+. .+++ +.|..
T Consensus 68 y~ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~----~~~~~~~i~~~Ik~~~~-~i~~~~~t~~ei~~~~~~~g~~--- 139 (343)
T TIGR03551 68 YLLSLEEIAERAAEAWKAGATEVCIQGGIHPDL----DGDFYLDILRAVKEEVP-GMHIHAFSPMEVYYGARNSGLS--- 139 (343)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCC----CHHHHHHHHHHHHHHCC-CceEEecCHHHHHHHHHHcCCC---
Confidence 45688889999999999997 3433 44 3221 22356777888887642 2222 23332
Q ss_pred hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCc
Q 022982 129 EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (289)
Q Consensus 129 ~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~ 200 (289)
. .+.+++++++|+.-.++.+. |+. .+.-+ +.+.|.+. +.+++++.++..-++|=.
T Consensus 140 ~---~e~l~~LkeAGl~~i~~~~~-----E~~--~~~v~-~~i~~~~~------~~~~~~~~i~~a~~~Gi~ 194 (343)
T TIGR03551 140 V---EEALKRLKEAGLDSMPGTAA-----EIL--DDEVR-KVICPDKL------STAEWIEIIKTAHKLGIP 194 (343)
T ss_pred H---HHHHHHHHHhCcccccCcch-----hhc--CHHHH-HhcCCCCC------CHHHHHHHHHHHHHcCCc
Confidence 2 35677788999986663332 111 01000 11222221 478889999999999973
No 443
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=63.04 E-value=80 Score=28.85 Aligned_cols=82 Identities=16% Similarity=0.178 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHHhCCceecC---Cc-----HH---HHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc---CCh-----
Q 022982 69 KPFIEEVVKRAHQHDVYVST---GD-----WA---EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE---IPE----- 129 (289)
Q Consensus 69 ~~~l~eKI~l~~~~gV~v~~---Gt-----lf---E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~---i~~----- 129 (289)
...+++--+.+.++|+.++. +. |. +....+.-+.+++.++.|+.+|.+.|=+..+... -+.
T Consensus 51 ~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~ 130 (279)
T TIGR00542 51 REQRLALVNAIIETGVRIPSMCLSAHRRFPLGSKDKAVRQQGLEIMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRR 130 (279)
T ss_pred HHHHHHHHHHHHHcCCCceeeecCCCccCcCCCcCHHHHHHHHHHHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHH
Confidence 55688888899999998763 21 11 1111121125888999999999999988654221 122
Q ss_pred --hHHHHHHHHHHHcCCccccee
Q 022982 130 --ETLLRYVRLVKSAGLKAKPKF 150 (289)
Q Consensus 130 --~~r~~lI~~~~~~G~~v~~E~ 150 (289)
+...++.+.+++.|.++.=|.
T Consensus 131 ~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 131 FREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHHHHcCCEEEEee
Confidence 223456677788888766663
No 444
>KOG2949 consensus Ketopantoate hydroxymethyltransferase [Coenzyme transport and metabolism]
Probab=62.80 E-value=41 Score=32.10 Aligned_cols=160 Identities=16% Similarity=0.220 Sum_probs=100.2
Q ss_pred CCCCCCCCCceeEecCCCCCCCchhHHHHHHHhhc-------ccccEEEecCccccccChhHHHHHH----HHHHhCCce
Q 022982 17 RAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMG-------QFVDGLKFSGGSHSLMPKPFIEEVV----KRAHQHDVY 85 (289)
Q Consensus 17 R~~KPR~~GlT~V~DkGl~~~~g~~~~~DlLe~ag-------~yID~lKfg~GTs~l~p~~~l~eKI----~l~~~~gV~ 85 (289)
|+.+-+..-+||+-.--++ +.-.++.+| |-.-..-.|--|..-.+ |.|.. ..+|-.+=.
T Consensus 31 Rqk~~~g~p~t~~TAYD~~-------~a~~~~~ag~dv~LVGDSl~Mt~~GhdtTlpiS---l~e~~yH~~sV~Rga~~~ 100 (306)
T KOG2949|consen 31 RQKHRAGEPITMVTAYDYP-------SAVHFDTAGIDVCLVGDSLAMTVHGHDTTLPIS---LEEMLYHCRSVARGAKRP 100 (306)
T ss_pred HHHHhcCCceEEEEecccc-------hhhhhhhcCCcEEEeccchhheeeccccceeee---HHHHHHHHHHHHccCCCc
Confidence 5555666678888766552 233444443 33333334444444333 33332 233333322
Q ss_pred e-----cCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCC
Q 022982 86 V-----STGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIP 160 (289)
Q Consensus 86 v-----~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg 160 (289)
. ..|| +|--+.+ .++.-.+-.|.-|.|+|-|-.|+ .-+..+++++.++|.-|.-.+|.--.. |
T Consensus 101 llv~DlPFgt-yeS~~sd---a~knAv~vmk~~g~~~vK~EgGs-----~~~~~~~~~l~ergipV~gHvGLTPQ~--v- 168 (306)
T KOG2949|consen 101 LLVGDLPFGT-YESSWSD---AVKNAVRVMKEGGMDAVKLEGGS-----NSRITAAKRLVERGIPVMGHVGLTPQA--V- 168 (306)
T ss_pred eEEEecCccc-ccccHHH---HHHHHHHHHHhcCCceEEEccCc-----HHHHHHHHHHHHcCCceeeeccCChhh--h-
Confidence 2 2244 4666666 58888899999999999999998 667889999999999999999873221 1
Q ss_pred CccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEec
Q 022982 161 SDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 161 ~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEa 206 (289)
..||.|-..- .......++++.+..-=++|++-|.+|-
T Consensus 169 ----~~lGGyk~QG----r~~~~a~~l~EtAmqLqk~Gc~svvlEC 206 (306)
T KOG2949|consen 169 ----SVLGGYKPQG----RNIASAVKLVETAMQLQKAGCFSVVLEC 206 (306)
T ss_pred ----hhccCcCccc----hhHHHHHHHHHHHHHHHhcccceEeeec
Confidence 1122221111 1122467889999988999999999997
No 445
>PHA02754 hypothetical protein; Provisional
Probab=62.51 E-value=5.5 Score=30.09 Aligned_cols=20 Identities=30% Similarity=0.551 Sum_probs=18.1
Q ss_pred hhHHHHHHHhhcccccEEEe
Q 022982 40 HNVLEDIFESMGQFVDGLKF 59 (289)
Q Consensus 40 ~~~~~DlLe~ag~yID~lKf 59 (289)
.++++|.|+.+|-|||-+|-
T Consensus 20 MRelkD~LSe~GiYi~RIka 39 (67)
T PHA02754 20 MRELKDILSEAGIYIDRIKA 39 (67)
T ss_pred HHHHHHHHhhCceEEEEEEE
Confidence 46899999999999999985
No 446
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=62.51 E-value=84 Score=31.23 Aligned_cols=106 Identities=17% Similarity=0.169 Sum_probs=68.4
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccc
Q 022982 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (289)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~ 183 (289)
.+..+.+.+++++. +.++.-.++|+.+++.+ +.+|-..+
T Consensus 102 a~aa~~~~e~~~~~---------~~p~l~~~ii~~vr~a~------VtvkiRl~-------------------------- 140 (369)
T TIGR01304 102 AAATRLLQELHAAP---------LKPELLGERIAEVRDSG------VITAVRVS-------------------------- 140 (369)
T ss_pred HHHHHHHHHcCCCc---------cChHHHHHHHHHHHhcc------eEEEEecC--------------------------
Confidence 46777778888887 46777778999999986 33432110
Q ss_pred HHHHHHHHHHHHHccCcEEEEecccc---c-cCCCCccHHHHHHHHhccCCCceEE-ecCCchhHHHHHHHhCCCc
Q 022982 184 VDLLIRRAERCLEAGADMIMIDSDDV---C-KHADSLRADIIAKVIGRLGLEKTMF-EATNPRTSEWFIRRYGPKV 254 (289)
Q Consensus 184 ~~~~I~~~~~dLeAGA~~ViiEarGI---~-d~~G~~r~d~v~~ii~~l~~eklif-EAP~k~qQ~~~I~~fG~~V 254 (289)
+....+.++..++|||+.|.+-+|=+ | ...++ ...+.++++.++.- +|. -....+.=..+++ .|.+.
T Consensus 141 ~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~--p~~l~~~i~~~~IP-VI~G~V~t~e~A~~~~~-aGaDg 212 (369)
T TIGR01304 141 PQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGE--PLNLKEFIGELDVP-VIAGGVNDYTTALHLMR-TGAAG 212 (369)
T ss_pred CcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCC--HHHHHHHHHHCCCC-EEEeCCCCHHHHHHHHH-cCCCE
Confidence 12236778888899999999998721 2 23344 55677788877753 443 3344444444554 78876
No 447
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=62.42 E-value=68 Score=28.73 Aligned_cols=133 Identities=14% Similarity=0.128 Sum_probs=74.0
Q ss_pred HHHHHHHhhcccccEEEecCccc-cccChhHHHHHHHHHHhCCceecCCcHHHHHHH-------hCCchHHHHHHHHHHc
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSH-SLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIR-------NGPSAFKEYVEDCKQV 113 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs-~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~-------qg~~~~~~yl~~~k~l 113 (289)
.+++.++.-.+-||+.=. .|.. .-.-.+.+++-.+++|++|+++.- |..+. ..++.+.+-.+.+.++
T Consensus 81 ~v~~a~~~Ga~~v~~~~~-~~~~~~~~~~~~i~~v~~~~~~~g~~~ii----e~~~~g~~~~~~~~~~~i~~~~~~a~~~ 155 (235)
T cd00958 81 SVEDAVRLGADAVGVTVY-VGSEEEREMLEELARVAAEAHKYGLPLIA----WMYPRGPAVKNEKDPDLIAYAARIGAEL 155 (235)
T ss_pred CHHHHHHCCCCEEEEEEe-cCCchHHHHHHHHHHHHHHHHHcCCCEEE----EEeccCCcccCccCHHHHHHHHHHHHHH
Confidence 456666665555554211 1211 111123677888888999986643 22210 0112344446668889
Q ss_pred CCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHH
Q 022982 114 GFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAER 193 (289)
Q Consensus 114 GF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~ 193 (289)
|.|+|-++. +. + .+.++++.+.. ..| + + - + | +. +..|+++..+.++.
T Consensus 156 GaD~Ik~~~-~~--~----~~~~~~i~~~~--~~p-v-v-~--~--G--G~---------------~~~~~~~~l~~~~~ 202 (235)
T cd00958 156 GADIVKTKY-TG--D----AESFKEVVEGC--PVP-V-V-I--A--G--GP---------------KKDSEEEFLKMVYD 202 (235)
T ss_pred CCCEEEecC-CC--C----HHHHHHHHhcC--CCC-E-E-E--e--C--CC---------------CCCCHHHHHHHHHH
Confidence 999999973 21 2 24455555531 122 2 1 1 0 0 00 01257888999999
Q ss_pred HHHccCcEEEEeccccccCC
Q 022982 194 CLEAGADMIMIDSDDVCKHA 213 (289)
Q Consensus 194 dLeAGA~~ViiEarGI~d~~ 213 (289)
.+++||+-|.+ +|.|+...
T Consensus 203 ~~~~Ga~gv~v-g~~i~~~~ 221 (235)
T cd00958 203 AMEAGAAGVAV-GRNIFQRP 221 (235)
T ss_pred HHHcCCcEEEe-chhhhcCC
Confidence 99999997754 67787665
No 448
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=62.38 E-value=1e+02 Score=32.32 Aligned_cols=145 Identities=15% Similarity=0.103 Sum_probs=93.7
Q ss_pred EEEecCccccccChh-----------HHHHHHHHHHhCCce--ecCCc-----H-HHHHHHhCCchHHHHHHHHHHcCCC
Q 022982 56 GLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVY--VSTGD-----W-AEHLIRNGPSAFKEYVEDCKQVGFD 116 (289)
Q Consensus 56 ~lKfg~GTs~l~p~~-----------~l~eKI~l~~~~gV~--v~~Gt-----l-fE~a~~qg~~~~~~yl~~~k~lGF~ 116 (289)
.+-+...||-++.+. .+++-++++++++.. .+.|+ | .|.+-.-+++.+-+.++.+.+.|-+
T Consensus 120 ~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~~~~~~~~~~~~~~v~f~~Ed~~r~d~~~l~~~~~~a~~ag~~ 199 (564)
T TIGR00970 120 TVHFYNATSILFREVVFRASRAEVQAIATDGTKLVRKCTKQAAKYPGTQWRFEYSPESFSDTELEFAKEVCEAVKEVWAP 199 (564)
T ss_pred EEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecccCCCCCHHHHHHHHHHHHHhCCC
Confidence 455555555444332 244566678998752 22232 1 3555445667888999999999974
Q ss_pred ------EEEecCCcccCChhHHHHHHHHHHHcCCc--ccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHH
Q 022982 117 ------TIELNVGSLEIPEETLLRYVRLVKSAGLK--AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 188 (289)
Q Consensus 117 ------~IEISdGti~i~~~~r~~lI~~~~~~G~~--v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I 188 (289)
.|-+.|-.--..+..-.++|+.++++ +. ...-+++.+ =.|...-+
T Consensus 200 ~~~~~~~i~l~DTvG~a~P~~~~~~i~~l~~~-~~~~~~~~l~vH~--------------------------HND~GlAv 252 (564)
T TIGR00970 200 TPERPIIFNLPATVEMTTPNVYADSIEYFSTN-IAEREKVCLSLHP--------------------------HNDRGTAV 252 (564)
T ss_pred ccCCeeEEEeccccCccCHHHHHHHHHHHHHh-cCcccCceEEEEE--------------------------CCCCChHH
Confidence 77788988888999999999999874 10 001133322 12333447
Q ss_pred HHHHHHHHccCcEEEEecc--ccccCCCCccHHHHHHHHhccC
Q 022982 189 RRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLG 229 (289)
Q Consensus 189 ~~~~~dLeAGA~~ViiEar--GI~d~~G~~r~d~v~~ii~~l~ 229 (289)
-.+...++|||+.| |+- |+=+..||...+.+--.+...|
T Consensus 253 ANslaAv~aGa~~v--~gt~~G~GERaGNa~le~lv~~L~~~g 293 (564)
T TIGR00970 253 AAAELGFLAGADRI--EGCLFGNGERTGNVDLVTLALNLYTQG 293 (564)
T ss_pred HHHHHHHHhCCCEE--EeecCcCCccccCccHHHHHHHHHhcC
Confidence 78888999999984 664 7766689888776665554433
No 449
>PRK06256 biotin synthase; Validated
Probab=62.34 E-value=51 Score=31.24 Aligned_cols=99 Identities=22% Similarity=0.212 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhC-CceecC-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc---------ccCChhHHHHHHHHH
Q 022982 71 FIEEVVKRAHQH-DVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS---------LEIPEETLLRYVRLV 139 (289)
Q Consensus 71 ~l~eKI~l~~~~-gV~v~~-GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt---------i~i~~~~r~~lI~~~ 139 (289)
.+.+.++..+++ ++.++. .+. .-++.++.+++.|++.+-++--| -.-+.+++.+.|+.+
T Consensus 127 ~~~e~i~~i~~~~~i~~~~~~g~----------l~~e~l~~LkeaG~~~v~~~lEts~~~~~~i~~~~t~~~~i~~i~~a 196 (336)
T PRK06256 127 QVVEAVKAIKEETDLEICACLGL----------LTEEQAERLKEAGVDRYNHNLETSRSYFPNVVTTHTYEDRIDTCEMV 196 (336)
T ss_pred HHHHHHHHHHhcCCCcEEecCCc----------CCHHHHHHHHHhCCCEEecCCccCHHHHhhcCCCCCHHHHHHHHHHH
Confidence 466666666654 443332 121 23577788999999998763211 123568889999999
Q ss_pred HHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEe
Q 022982 140 KSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMID 205 (289)
Q Consensus 140 ~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiE 205 (289)
++.|+++.+-+-+ +.. ++.+++++.+..--+.|.+.|.+-
T Consensus 197 ~~~Gi~v~~~~I~--Glg------------------------Et~ed~~~~~~~l~~l~~~~v~i~ 236 (336)
T PRK06256 197 KAAGIEPCSGGII--GMG------------------------ESLEDRVEHAFFLKELDADSIPIN 236 (336)
T ss_pred HHcCCeeccCeEE--eCC------------------------CCHHHHHHHHHHHHhCCCCEEeec
Confidence 9999987653322 211 136666777766667888877653
No 450
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=62.14 E-value=14 Score=36.39 Aligned_cols=115 Identities=18% Similarity=0.248 Sum_probs=82.3
Q ss_pred HHHH-HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 022982 103 FKEY-VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (289)
Q Consensus 103 ~~~y-l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 181 (289)
+|+| +.+++.+|=|+|=+=...+ ++++..++++.+++.||.|+-|++-
T Consensus 191 ID~yQI~eAr~~GADAVLLIaaiL--~~~~L~~l~~~A~~LGme~LVEVH~----------------------------- 239 (338)
T PLN02460 191 VDAWQIYYARSKGADAILLIAAVL--PDLDIKYMLKICKSLGMAALIEVHD----------------------------- 239 (338)
T ss_pred CCHHHHHHHHHcCCCcHHHHHHhC--CHHHHHHHHHHHHHcCCeEEEEeCC-----------------------------
Confidence 3444 5788899999987766655 5788999999999999999999876
Q ss_pred ccHHHHHHHHHHHHHc-cCcEEEEeccccccCCCCccHHHHHHHHh-----ccCCCce--EEecC-CchhHHHHHHHhCC
Q 022982 182 EDVDLLIRRAERCLEA-GADMIMIDSDDVCKHADSLRADIIAKVIG-----RLGLEKT--MFEAT-NPRTSEWFIRRYGP 252 (289)
Q Consensus 182 ~~~~~~I~~~~~dLeA-GA~~ViiEarGI~d~~G~~r~d~v~~ii~-----~l~~ekl--ifEAP-~k~qQ~~~I~~fG~ 252 (289)
-+++++.|++ ||..|=|..|.+-.=. +.-+.-.+++. .++++.+ +=|.= .-..+...+++.|.
T Consensus 240 ------~~ElerAl~~~ga~iIGINNRdL~Tf~--vDl~~t~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~Ga 311 (338)
T PLN02460 240 ------EREMDRVLGIEGVELIGINNRSLETFE--VDISNTKKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAGV 311 (338)
T ss_pred ------HHHHHHHHhcCCCCEEEEeCCCCCcce--ECHHHHHHHhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCCC
Confidence 3567778998 9999999999763322 22444555665 4543333 44444 33467888889998
Q ss_pred Cccc
Q 022982 253 KVNL 256 (289)
Q Consensus 253 ~VNL 256 (289)
|-=|
T Consensus 312 dAvL 315 (338)
T PLN02460 312 KAVL 315 (338)
T ss_pred CEEE
Confidence 7766
No 451
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=62.12 E-value=42 Score=32.66 Aligned_cols=116 Identities=11% Similarity=0.156 Sum_probs=80.6
Q ss_pred eeEecCCCCCCCchhHHHHHHHhhcccccEE-EecCccccccChhHHHHHHHHHHhCCc-eecCC--cHHHHHHHh-C-C
Q 022982 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGL-KFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G-P 100 (289)
Q Consensus 27 T~V~DkGl~~~~g~~~~~DlLe~ag~yID~l-Kfg~GTs~l~p~~~l~eKI~l~~~~gV-~v~~G--tlfE~a~~q-g-~ 100 (289)
|.-++=|=+..-.+..++.+|+....|++-. .+ |.-..|...-.++++.++++|+ .++-| ++-+..+.. | +
T Consensus 59 tiy~GGGTPs~L~~~~l~~ll~~i~~~~~~~~ei---tiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~ 135 (353)
T PRK05904 59 TIYLGGGTPNCLNDQLLDILLSTIKPYVDNNCEF---TIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLNRT 135 (353)
T ss_pred EEEECCCccccCCHHHHHHHHHHHHHhcCCCCeE---EEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCC
Confidence 5556655432227889999999998885311 11 3344566667899999999999 78777 665555532 1 1
Q ss_pred ---chHHHHHHHHHHcCCC--EEEecCCcccCChhHHHHHHHHHHHcCCc
Q 022982 101 ---SAFKEYVEDCKQVGFD--TIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (289)
Q Consensus 101 ---~~~~~yl~~~k~lGF~--~IEISdGti~i~~~~r~~lI~~~~~~G~~ 145 (289)
+.+.+-++.|++.||+ .+.+--|.=.-+.++..+.++.+.+.+..
T Consensus 136 ~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~ 185 (353)
T PRK05904 136 HTIQDSKEAINLLHKNGIYNISCDFLYCLPILKLKDLDEVFNFILKHKIN 185 (353)
T ss_pred CCHHHHHHHHHHHHHcCCCcEEEEEeecCCCCCHHHHHHHHHHHHhcCCC
Confidence 2355566778889998 45666777778888888889998887665
No 452
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=62.11 E-value=19 Score=35.62 Aligned_cols=111 Identities=15% Similarity=0.266 Sum_probs=0.0
Q ss_pred EEecCccccccChhHH----------------HHHHHHHHhCCceecC--CcHH---------H-----------HHHHh
Q 022982 57 LKFSGGSHSLMPKPFI----------------EEVVKRAHQHDVYVST--GDWA---------E-----------HLIRN 98 (289)
Q Consensus 57 lKfg~GTs~l~p~~~l----------------~eKI~l~~~~gV~v~~--Gtlf---------E-----------~a~~q 98 (289)
++.|| ||..++-..| |+-+++||.+||.|-. |.+. | ..+.-
T Consensus 93 i~~GF-tSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsVEaELG~igg~e~~~~g~~d~~~~~~~~~~~~~~T 171 (347)
T TIGR01521 93 IQLGF-TSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASVEGELGCLGSLETGMGEAEDGHGFEGVLDHSQLLT 171 (347)
T ss_pred HHcCC-CEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeecccccccccccccCcccccccchhhcCC
Q ss_pred CCchHHHHHHHHHHcCCCEEEecCCcc------cCChh---HHHHHHHHHHHcCCcccceee----eecCCCCCCCcccc
Q 022982 99 GPSAFKEYVEDCKQVGFDTIELNVGSL------EIPEE---TLLRYVRLVKSAGLKAKPKFA----VMFNKSDIPSDRDR 165 (289)
Q Consensus 99 g~~~~~~yl~~~k~lGF~~IEISdGti------~i~~~---~r~~lI~~~~~~G~~v~~E~g----~k~~~~evg~~~d~ 165 (289)
+|+...+|++.. |.|++=||-||. ...+. -....++.+++ .+. |-.+.|.+
T Consensus 172 ~PeeA~~Fv~~T---gvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~-------~v~~vPLVLHGgSG~------ 235 (347)
T TIGR01521 172 DPEEAADFVKKT---KVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHA-------RLPDTHLVMHGSSSV------ 235 (347)
T ss_pred CHHHHHHHHHHH---CcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHc-------cCCCCCEEEeCCCCC------
Q ss_pred ccccccccCCCCccccccHHHH------------------HHHHHHHHHccCcEE
Q 022982 166 AFGAYVARAPRSTEYVEDVDLL------------------IRRAERCLEAGADMI 202 (289)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~------------------I~~~~~dLeAGA~~V 202 (289)
++++ -+++++.++.|..+|
T Consensus 236 ------------------p~~~~~~~~~~~~~~~~~~g~p~e~i~~ai~~GI~KV 272 (347)
T TIGR01521 236 ------------------PQEWLDIINEYGGEIKETYGVPVEEIVEGIKYGVRKV 272 (347)
T ss_pred ------------------chHhhHHHHhhcccccccCCCCHHHHHHHHHCCCeeE
No 453
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=61.96 E-value=35 Score=30.84 Aligned_cols=70 Identities=19% Similarity=0.284 Sum_probs=45.6
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 180 (289)
+...+..+.+.+-|++.+||..-+- ...+.|+.+++. +...--+|. |..++
T Consensus 22 ~~~~~~~~a~~~gGi~~iEvt~~~~-----~~~~~i~~l~~~-~~~~~~iGa---------------GTV~~-------- 72 (206)
T PRK09140 22 DEALAHVGALIEAGFRAIEIPLNSP-----DPFDSIAALVKA-LGDRALIGA---------------GTVLS-------- 72 (206)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCc-----cHHHHHHHHHHH-cCCCcEEeE---------------EecCC--------
Confidence 3566778889999999999985443 344577777763 111001222 11222
Q ss_pred cccHHHHHHHHHHHHHccCcEEEEec
Q 022982 181 VEDVDLLIRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 181 ~~~~~~~I~~~~~dLeAGA~~ViiEa 206 (289)
.++++..++|||+.++.=+
T Consensus 73 -------~~~~~~a~~aGA~fivsp~ 91 (206)
T PRK09140 73 -------PEQVDRLADAGGRLIVTPN 91 (206)
T ss_pred -------HHHHHHHHHcCCCEEECCC
Confidence 5678889999999999854
No 454
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=61.85 E-value=1.5e+02 Score=29.06 Aligned_cols=42 Identities=19% Similarity=0.324 Sum_probs=36.4
Q ss_pred HHHHHHHHHHccCcEEEEecc-----ccccCCCCccHHHHHHHHhcc
Q 022982 187 LIRRAERCLEAGADMIMIDSD-----DVCKHADSLRADIIAKVIGRL 228 (289)
Q Consensus 187 ~I~~~~~dLeAGA~~ViiEar-----GI~d~~G~~r~d~v~~ii~~l 228 (289)
....+...+.+||+-+|||-- -+.|..-.+..+.++++++++
T Consensus 279 v~~~a~AAvA~GAdGliIE~H~~pd~alsD~~~sl~p~e~~~lv~~i 325 (335)
T PRK08673 279 VEPLALAAVAAGADGLIVEVHPDPEKALSDGPQSLTPEEFEELMKKL 325 (335)
T ss_pred hHHHHHHHHHhCCCEEEEEecCCcccCCCcchhcCCHHHHHHHHHHH
Confidence 456788999999999999983 689999999999999998765
No 455
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=61.79 E-value=21 Score=30.41 Aligned_cols=94 Identities=20% Similarity=0.326 Sum_probs=58.4
Q ss_pred chhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecC-CcHHHHHHHhCCchHHHHHHHHHHcCC-C
Q 022982 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGF-D 116 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~-GtlfE~a~~qg~~~~~~yl~~~k~lGF-~ 116 (289)
|.+-+..+|+.+|- +.+=+|- -.| .++-++.|.+++..+-. -.+.= +.-..+++.++.+++.|. +
T Consensus 15 Gkniv~~~L~~~Gf--eVidLG~----~v~---~e~~v~aa~~~~adiVglS~L~t----~~~~~~~~~~~~l~~~gl~~ 81 (128)
T cd02072 15 GNKILDHAFTEAGF--NVVNLGV----LSP---QEEFIDAAIETDADAILVSSLYG----HGEIDCKGLREKCDEAGLKD 81 (128)
T ss_pred HHHHHHHHHHHCCC--EEEECCC----CCC---HHHHHHHHHHcCCCEEEEecccc----CCHHHHHHHHHHHHHCCCCC
Confidence 45566677776663 3444452 122 45666677777764422 11110 000145677778888998 6
Q ss_pred EEEecCCcccCChhHHHHHHHHHHHcCCc
Q 022982 117 TIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (289)
Q Consensus 117 ~IEISdGti~i~~~~r~~lI~~~~~~G~~ 145 (289)
..=+=-|.+.+|.+++.+-++++++.|+.
T Consensus 82 v~vivGG~~~i~~~d~~~~~~~L~~~Gv~ 110 (128)
T cd02072 82 ILLYVGGNLVVGKQDFEDVEKRFKEMGFD 110 (128)
T ss_pred CeEEEECCCCCChhhhHHHHHHHHHcCCC
Confidence 55556677889999998889999998775
No 456
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=61.62 E-value=14 Score=36.44 Aligned_cols=110 Identities=15% Similarity=0.327 Sum_probs=0.0
Q ss_pred EEecCccccccChhHH----------------HHHHHHHHhCCceecC--CcHH---------------------HHHHH
Q 022982 57 LKFSGGSHSLMPKPFI----------------EEVVKRAHQHDVYVST--GDWA---------------------EHLIR 97 (289)
Q Consensus 57 lKfg~GTs~l~p~~~l----------------~eKI~l~~~~gV~v~~--Gtlf---------------------E~a~~ 97 (289)
++.|| ||..++-..| |+-+++||.+||.|-. |..- +..++
T Consensus 95 i~~GF-tSVMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVEaELG~igg~e~~~~g~ed~~~~~~~~~~~~~~T 173 (347)
T PRK13399 95 IRSGF-TSVMMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVEGELGCLGSLETGEAGEEDGVGAEGKLSHDQMLT 173 (347)
T ss_pred HhcCC-CEEEEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEEEEeeeccCcccccccccCCccccccccccccCC
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecCCcc------cCChh---HHHHHHHHHHHcCCcccceee----eecCCCCCCCccc
Q 022982 98 NGPSAFKEYVEDCKQVGFDTIELNVGSL------EIPEE---TLLRYVRLVKSAGLKAKPKFA----VMFNKSDIPSDRD 164 (289)
Q Consensus 98 qg~~~~~~yl~~~k~lGF~~IEISdGti------~i~~~---~r~~lI~~~~~~G~~v~~E~g----~k~~~~evg~~~d 164 (289)
.- ++-.+.+++-|.|++=||-||. ...+. -...+++.+++ ++. |-.+.|.+
T Consensus 174 ~P----eeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~-------~v~~vPLVLHGgSGv----- 237 (347)
T PRK13399 174 DP----DQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHA-------RLPNTHLVMHGSSSV----- 237 (347)
T ss_pred CH----HHHHHHHHHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHh-------hcCCCCEEEeCCCCC-----
Q ss_pred cccccccccCCCCccccccHHHH------------------HHHHHHHHHccCcEE
Q 022982 165 RAFGAYVARAPRSTEYVEDVDLL------------------IRRAERCLEAGADMI 202 (289)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~------------------I~~~~~dLeAGA~~V 202 (289)
+.++ .++++++++.|..+|
T Consensus 238 -------------------p~~~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KI 274 (347)
T PRK13399 238 -------------------PQELQEIINAYGGKMKETYGVPVEEIQRGIKHGVRKV 274 (347)
T ss_pred -------------------CHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCeEE
No 457
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=61.55 E-value=72 Score=28.86 Aligned_cols=97 Identities=13% Similarity=0.253 Sum_probs=58.9
Q ss_pred HHHHHhhccc-ccEEEecCccccc-----cChhHHHHHHHHHHhCCceecC-CcHH-------HHHHHhCCchHHHHHHH
Q 022982 44 EDIFESMGQF-VDGLKFSGGSHSL-----MPKPFIEEVVKRAHQHDVYVST-GDWA-------EHLIRNGPSAFKEYVED 109 (289)
Q Consensus 44 ~DlLe~ag~y-ID~lKfg~GTs~l-----~p~~~l~eKI~l~~~~gV~v~~-Gtlf-------E~a~~qg~~~~~~yl~~ 109 (289)
++-++.+.++ +|.+-|-.+.... ++.+.+++--++++++||.++. +.+. +....+.-+.+.+.++.
T Consensus 13 ~~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~ls~h~p~~~nl~s~d~~~r~~~~~~l~~~i~~ 92 (273)
T smart00518 13 YKAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENNIDVSVHAPYLINLASPDKEKVEKSIERLIDEIKR 92 (273)
T ss_pred hHHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCceecCCCCCHHHHHHHHHHHHHHHHH
Confidence 3556666666 6766665555433 3455688888889999997764 4321 11111111257888899
Q ss_pred HHHcCCCEEEecCCcccC-C-hhHHHHHHHHHH
Q 022982 110 CKQVGFDTIELNVGSLEI-P-EETLLRYVRLVK 140 (289)
Q Consensus 110 ~k~lGF~~IEISdGti~i-~-~~~r~~lI~~~~ 140 (289)
|+++|.+.|=+--|+..- + .+.+.++++.++
T Consensus 93 A~~lGa~~vv~h~g~~~~~~~e~~~~~~~~~l~ 125 (273)
T smart00518 93 CEELGIKALVFHPGSYLKQSKEEALNRIIESLN 125 (273)
T ss_pred HHHcCCCEEEEccccccCCCHHHHHHHHHHHHH
Confidence 999999998887776522 1 333444444443
No 458
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=61.27 E-value=23 Score=32.16 Aligned_cols=93 Identities=9% Similarity=-0.042 Sum_probs=54.2
Q ss_pred chhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHH-HHHHcCCCE
Q 022982 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVE-DCKQVGFDT 117 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~-~~k~lGF~~ 117 (289)
......++++...+|+|++|+|+--..-+..+.+++.-+++. |.++.- ..-+. + +..|+. .+.+.|.|.
T Consensus 14 ~~~~a~~l~~~l~~~v~~~kvG~~l~~~~G~~~i~~lk~~~~--~~~v~~----DLK~~-D---i~~~v~~~~~~~Gad~ 83 (216)
T PRK13306 14 DLESAIEDAKKVAEEVDIIEVGTILLLAEGMKAVRVLRALYP--DKIIVA----DTKIA-D---AGKILAKMAFEAGADW 83 (216)
T ss_pred CHHHHHHHHHHccccCCEEEEChHHHHHhCHHHHHHHHHHCC--CCEEEE----EEeec-C---CcHHHHHHHHHCCCCE
Confidence 455777899999999999999987766666555555544331 222211 11111 1 112222 256677777
Q ss_pred EEecCCcccCChhHHHHHHHHHHHcCC
Q 022982 118 IELNVGSLEIPEETLLRYVRLVKSAGL 144 (289)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~G~ 144 (289)
+-|.--+ +.+.-.+.++.+++.|.
T Consensus 84 vTvH~~a---~~~~i~~~~~~~~~~g~ 107 (216)
T PRK13306 84 VTVICAA---HIPTIKAALKVAKEFNG 107 (216)
T ss_pred EEEeCCC---CHHHHHHHHHHHHHcCC
Confidence 7777422 55556666666666554
No 459
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=61.08 E-value=34 Score=35.22 Aligned_cols=101 Identities=14% Similarity=0.146 Sum_probs=68.2
Q ss_pred chhHHHHHHHhhcc-cccEEEecCccc----cccChhHHHHHHHHHHhCCceecC-Cc-HHHHHH--------HhCCchH
Q 022982 39 SHNVLEDIFESMGQ-FVDGLKFSGGSH----SLMPKPFIEEVVKRAHQHDVYVST-GD-WAEHLI--------RNGPSAF 103 (289)
Q Consensus 39 g~~~~~DlLe~ag~-yID~lKfg~GTs----~l~p~~~l~eKI~l~~~~gV~v~~-Gt-lfE~a~--------~qg~~~~ 103 (289)
.+..+++.+...|. =|-++-..-.+- ..+|-+.+++--++||+|||++.. |. +||.|+ .+| -.+
T Consensus 168 dl~~le~~I~~~g~~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~-~si 246 (467)
T TIGR02617 168 DLEGLERGIEEVGPNNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKN-WSI 246 (467)
T ss_pred CHHHHHHHHhhcCCCCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcC-CCH
Confidence 67788999987652 233333222111 257778999999999999999988 75 999664 232 357
Q ss_pred HHHHHHHHHcCCCEEEecC---------CcccCChhHHHHHHHHHHH
Q 022982 104 KEYVEDCKQVGFDTIELNV---------GSLEIPEETLLRYVRLVKS 141 (289)
Q Consensus 104 ~~yl~~~k~lGF~~IEISd---------Gti~i~~~~r~~lI~~~~~ 141 (289)
.++.++.-+ .||.|-+|- |.+-.+.+.+.++-++++.
T Consensus 247 ~eI~rE~~~-~aDsvt~slsKglgApvGg~Lag~d~~~~~l~~~~~~ 292 (467)
T TIGR02617 247 EQITRETYK-YADMLAMSAKKDAMVPMGGLLCFKDDSFFDVYTECRT 292 (467)
T ss_pred HHHHHHhhc-cCCEEEEEcCCCCCCcccceEEecchhHHHHHHHHHh
Confidence 777765544 378888773 4556677766677777766
No 460
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=60.89 E-value=48 Score=32.62 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=18.1
Q ss_pred cHHHHHHHHHHHHHccCcEEEE
Q 022982 183 DVDLLIRRAERCLEAGADMIMI 204 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAGA~~Vii 204 (289)
|+++.++.++...++|+|+|=+
T Consensus 233 ~~~e~~~~~~~l~~~gvd~i~v 254 (361)
T cd04747 233 TPDELEALLAPLVDAGVDIFHC 254 (361)
T ss_pred CHHHHHHHHHHHHHcCCCEEEe
Confidence 5788888888888999999644
No 461
>PLN02858 fructose-bisphosphate aldolase
Probab=60.81 E-value=1e+02 Score=35.79 Aligned_cols=166 Identities=17% Similarity=0.202 Sum_probs=105.1
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceec----CCcH-------HHH--HHHhC---C-----
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS----TGDW-------AEH--LIRNG---P----- 100 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~----~Gtl-------fE~--a~~qg---~----- 100 (289)
.++++|..|-+ =+++-|.+-+++-+.++.-|+-|.+.+.++. +|+. ... .+.+. |
T Consensus 1101 ~~~~~l~~A~~----~~yav~afn~~n~e~~~avi~aAe~~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~lHL 1176 (1378)
T PLN02858 1101 STKELLLNAEK----GGYAVGAFNVYNLEGIEAVVAAAEAEKSPAILQVHPGALKQGGIPLVSCCIAAAEQASVPITVHF 1176 (1378)
T ss_pred cHHHHHHHHHH----CCcEEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCccHHhhcCHHHHHHHHHHHHHCCCCEEEEC
Confidence 34566665533 2578889999999999999999998887553 3322 111 11211 0
Q ss_pred --chHHHHHHHHHHcCCCEEEecCCcccCChhHH----HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccC
Q 022982 101 --SAFKEYVEDCKQVGFDTIELNVGSLEIPEETL----LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (289)
Q Consensus 101 --~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r----~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 174 (289)
..=.+.+..|-+.||+.|=+.--.. |.++= .+++++++..|.-|--|+|.=-+ .+|.. ...
T Consensus 1177 DHg~~~~~i~~ai~~Gf~SVM~DgS~l--~~eeNi~~t~~vv~~Ah~~gv~VEaElG~v~g------~e~~~---~~~-- 1243 (1378)
T PLN02858 1177 DHGTSKHELLEALELGFDSVMVDGSHL--SFTENISYTKSISSLAHSKGLMVEAELGRLSG------TEDGL---TVE-- 1243 (1378)
T ss_pred CCCCCHHHHHHHHHhCCCEEEEeCCCC--CHHHHHHHHHHHHHHHHHcCCEEEEEecccCC------ccCCc---ccc--
Confidence 1224678888899999999976554 44443 36777888889999999988321 11210 000
Q ss_pred CCCccccccHHHHHHHHHHHHHccCcEEEEec---cccccC-CCCccHHHHHHHHhcc
Q 022982 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDS---DDVCKH-ADSLRADIIAKVIGRL 228 (289)
Q Consensus 175 ~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEa---rGI~d~-~G~~r~d~v~~ii~~l 228 (289)
.-.+. ..||++..+.++ +-|+|..-+== -|+|.. .-+++-|.+.+|-+.+
T Consensus 1244 ~~~~~-~T~p~~a~~Fv~---~TgvD~LAvaiGt~HG~Y~~~~p~l~~~~l~~i~~~~ 1297 (1378)
T PLN02858 1244 EYEAK-LTDVDQAKEFID---ETGIDALAVCIGNVHGKYPASGPNLRLDLLKELRALS 1297 (1378)
T ss_pred ccccC-CCCHHHHHHHHH---hcCCcEEeeecccccccCCCCCCccCHHHHHHHHHHh
Confidence 00000 125655555554 25888876643 399987 5689999999999887
No 462
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=60.51 E-value=46 Score=33.30 Aligned_cols=108 Identities=14% Similarity=0.186 Sum_probs=74.4
Q ss_pred chhHHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCc-eecCC--cHHHHHHH---hC--CchHHHHHHHH
Q 022982 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIR---NG--PSAFKEYVEDC 110 (289)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV-~v~~G--tlfE~a~~---qg--~~~~~~yl~~~ 110 (289)
.+..+.++++..-.+..+.+-..-|.-..|...=.++++.++++|+ .++-| ++=+..+. ++ .+.+.+-++.+
T Consensus 117 ~~~~l~~ll~~i~~~~~~~~~~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l 196 (455)
T TIGR00538 117 SPEQISRLMKLIRENFPFNADAEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHA 196 (455)
T ss_pred CHHHHHHHHHHHHHhCCCCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHH
Confidence 5788999999887764422211123334455555789999999999 77767 55444332 21 12466678888
Q ss_pred HHcCCC--EEEecCCcccCChhHHHHHHHHHHHcCCcc
Q 022982 111 KQVGFD--TIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (289)
Q Consensus 111 k~lGF~--~IEISdGti~i~~~~r~~lI~~~~~~G~~v 146 (289)
++.||+ .+-+--|.-.-+.++..+.++.+.+.|..-
T Consensus 197 ~~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~~~~ 234 (455)
T TIGR00538 197 REAGFTSINIDLIYGLPKQTKESFAKTLEKVAELNPDR 234 (455)
T ss_pred HhcCCCcEEEeEEeeCCCCCHHHHHHHHHHHHhcCCCE
Confidence 999998 456667777788889999999999987653
No 463
>PRK12313 glycogen branching enzyme; Provisional
Probab=60.49 E-value=19 Score=37.77 Aligned_cols=50 Identities=16% Similarity=0.302 Sum_probs=38.3
Q ss_pred HHHHHHHHHHcCCCEEEecC----------Cc-----ccC-----ChhHHHHHHHHHHHcCCcccceeee
Q 022982 103 FKEYVEDCKQVGFDTIELNV----------GS-----LEI-----PEETLLRYVRLVKSAGLKAKPKFAV 152 (289)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISd----------Gt-----i~i-----~~~~r~~lI~~~~~~G~~v~~E~g~ 152 (289)
.++.+.++|+||+++||++= |. ..+ +.++..++|+.+.++|++|+-.+-.
T Consensus 173 ~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~V~ 242 (633)
T PRK12313 173 ADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDWVP 242 (633)
T ss_pred HHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 45567899999999999853 11 112 3578999999999999999887644
No 464
>PRK06852 aldolase; Validated
Probab=60.49 E-value=1.2e+02 Score=29.48 Aligned_cols=144 Identities=9% Similarity=0.042 Sum_probs=82.5
Q ss_pred EEEecCcccccc----Ch-hHHHHHHHHHHhCC-----------ceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEE
Q 022982 56 GLKFSGGSHSLM----PK-PFIEEVVKRAHQHD-----------VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIE 119 (289)
Q Consensus 56 ~lKfg~GTs~l~----p~-~~l~eKI~l~~~~g-----------V~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IE 119 (289)
++|+..+|+... ++ ..+---++-+-+.| +.+|+|.=.|.--.+ .+-+-.++|+++|+-.|-
T Consensus 96 Ilkl~~~t~l~~~~~~~p~~~l~~sVeeAvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~---~l~~v~~ea~~~GlPll~ 172 (304)
T PRK06852 96 LVKLNSKTNLVKTSQRDPLSRQLLDVEQVVEFKENSGLNILGVGYTIYLGSEYESEMLS---EAAQIIYEAHKHGLIAVL 172 (304)
T ss_pred EEEECCCCCcCCcccCCccccceecHHHHHhcCCccCCCceEEEEEEecCCHHHHHHHH---HHHHHHHHHHHhCCcEEE
Confidence 588988777664 11 12333344455544 588899877765555 578889999999999985
Q ss_pred --------ecCCcccCChhHHHHHHHHHHHcC---CcccceeeeecCCCCCCCccc-cccccccc---cCC-CCcccc-c
Q 022982 120 --------LNVGSLEIPEETLLRYVRLVKSAG---LKAKPKFAVMFNKSDIPSDRD-RAFGAYVA---RAP-RSTEYV-E 182 (289)
Q Consensus 120 --------ISdGti~i~~~~r~~lI~~~~~~G---~~v~~E~g~k~~~~evg~~~d-~~~~~~~~---~~~-~~~~~~-~ 182 (289)
|+|+. +++.-.-+.|.+.+.| .|+.+ ..+.. ++| ..|...+. |.+ ..+-|. .
T Consensus 173 ~~yprG~~i~~~~---~~~~ia~aaRiaaELGADIVKv~y--~~~~~------~g~~e~f~~vv~~~g~vpVviaGG~k~ 241 (304)
T PRK06852 173 WIYPRGKAVKDEK---DPHLIAGAAGVAACLGADFVKVNY--PKKEG------ANPAELFKEAVLAAGRTKVVCAGGSST 241 (304)
T ss_pred EeeccCcccCCCc---cHHHHHHHHHHHHHHcCCEEEecC--CCcCC------CCCHHHHHHHHHhCCCCcEEEeCCCCC
Confidence 33322 2344555566666666 33332 10000 000 01110000 000 001111 1
Q ss_pred cHHHHHHHHHHHHH-ccCcEEEEeccccccCCC
Q 022982 183 DVDLLIRRAERCLE-AGADMIMIDSDDVCKHAD 214 (289)
Q Consensus 183 ~~~~~I~~~~~dLe-AGA~~ViiEarGI~d~~G 214 (289)
+.+++.++++..++ +||.=|++ +|.||....
T Consensus 242 ~~~e~L~~v~~ai~~aGa~Gv~~-GRNIfQ~~~ 273 (304)
T PRK06852 242 DPEEFLKQLYEQIHISGASGNAT-GRNIHQKPL 273 (304)
T ss_pred CHHHHHHHHHHHHHHcCCceeee-chhhhcCCC
Confidence 46789999999999 99988877 788887754
No 465
>PRK15447 putative protease; Provisional
Probab=60.49 E-value=39 Score=32.14 Aligned_cols=86 Identities=21% Similarity=0.142 Sum_probs=52.7
Q ss_pred HHHHHHHhhcc-cccEEEecCccccc---cChhHHHHHHHHHHhCCceecCC--cH-H-HHHHHhCCchHHHHHHHHHHc
Q 022982 42 VLEDIFESMGQ-FVDGLKFSGGSHSL---MPKPFIEEVVKRAHQHDVYVSTG--DW-A-EHLIRNGPSAFKEYVEDCKQV 113 (289)
Q Consensus 42 ~~~DlLe~ag~-yID~lKfg~GTs~l---~p~~~l~eKI~l~~~~gV~v~~G--tl-f-E~a~~qg~~~~~~yl~~~k~l 113 (289)
.++|+.....+ -+|-+=+|...... +..+.+++-++.+|++|.++|.- .. . +. .++.+.+.++ .
T Consensus 16 ~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~-------e~~~l~~~l~-~ 87 (301)
T PRK15447 16 TVRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEAPS-------ELKELRRLVE-N 87 (301)
T ss_pred CHHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccCHH-------HHHHHHHHHh-c
Confidence 55666665533 58888888654332 56677999999999999988753 22 1 22 2333333222 3
Q ss_pred CCCEEEecCCcccCChhHHHHHHHHHHHcCCc
Q 022982 114 GFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (289)
Q Consensus 114 GF~~IEISdGti~i~~~~r~~lI~~~~~~G~~ 145 (289)
|.+.|.|+| ...++.+++.|+.
T Consensus 88 ~~~~v~v~d----------~g~l~~~~e~~~~ 109 (301)
T PRK15447 88 GEFLVEAND----------LGAVRLLAERGLP 109 (301)
T ss_pred CCCEEEEeC----------HHHHHHHHhcCCC
Confidence 777888876 3445555555554
No 466
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=60.41 E-value=1.4e+02 Score=27.35 Aligned_cols=53 Identities=17% Similarity=0.060 Sum_probs=33.7
Q ss_pred HHHHHHHHccCcEEEEeccccccCCC----CccHHHHHHHHhccCCCceEEecCCchh
Q 022982 189 RRAERCLEAGADMIMIDSDDVCKHAD----SLRADIIAKVIGRLGLEKTMFEATNPRT 242 (289)
Q Consensus 189 ~~~~~dLeAGA~~ViiEarGI~d~~G----~~r~d~v~~ii~~l~~eklifEAP~k~q 242 (289)
+.++..++.|++.-+ .+-+.+...| +-+...+.++++..++++|++|...+..
T Consensus 192 ~~~~~~~~~G~~i~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~ill~TD~p~~ 248 (293)
T cd00530 192 DYLLKIAALGAYLEF-DGIGKDKIFGYPSDETRADAVKALIDEGYGDRLLLSHDVFRK 248 (293)
T ss_pred HHHHHHHhCCCEEEe-CCCCcccccCCCCHHHHHHHHHHHHHCCCcCCEEEeCCcCch
Confidence 567777888864433 2222221111 2356678889999999999999765553
No 467
>cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology). But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid.
Probab=60.40 E-value=1.3e+02 Score=29.39 Aligned_cols=125 Identities=14% Similarity=0.156 Sum_probs=73.6
Q ss_pred CCCceeEecCCC---CCCCchhHHHHHHHhhc--ccccEEEecC------------------------cc-----ccccC
Q 022982 23 RFGVTEMRSPHY---TLSSSHNVLEDIFESMG--QFVDGLKFSG------------------------GS-----HSLMP 68 (289)
Q Consensus 23 ~~GlT~V~DkGl---~~~~g~~~~~DlLe~ag--~yID~lKfg~------------------------GT-----s~l~p 68 (289)
..|+|.|+|-+. +...+...+++.++.+. .|+|+.-.+. +. ....+
T Consensus 81 ~gGvTtv~d~p~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ei~~l~~~G~~giKv~~~~~~~~~~~~~~ 160 (447)
T cd01315 81 AGGITTIIDMPLNSIPPTTTVENLEAKLEAAQGKLHVDVGFWGGLVPGNLDQLRPLDEAGVVGFKCFLCPSGVDEFPAVD 160 (447)
T ss_pred hCCceEEEeCCCCCCCCcCCHHHHHHHHHHhccCceeeEEEEEeecCCCHHHHHHHHHcCCcEEEEEecccCCCCcccCC
Confidence 359999998753 22225667777777763 4666643221 10 01234
Q ss_pred hhHHHHHHHHHHhCCceecC--Cc--HHHHHHH--------------h------CCchHHHHHHHHHHcCCCEEEecCCc
Q 022982 69 KPFIEEVVKRAHQHDVYVST--GD--WAEHLIR--------------N------GPSAFKEYVEDCKQVGFDTIELNVGS 124 (289)
Q Consensus 69 ~~~l~eKI~l~~~~gV~v~~--Gt--lfE~a~~--------------q------g~~~~~~yl~~~k~lGF~~IEISdGt 124 (289)
.+.+++-++.++++|..++. +. ++..... + -...+.++++.+++.|... =++-
T Consensus 161 ~~~l~~~~~~a~~~g~~v~vH~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~~~~~~~la~~~g~~i-hi~h-- 237 (447)
T cd01315 161 DEQLEEAMKELAKTGSVLAVHAENPEITEALQEQAKAKGKRDYRDYLASRPVFTEVEAIQRILLLAKETGCRL-HIVH-- 237 (447)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHhHhhcCCCChHHhhccCCHHHHHHHHHHHHHHHHHhCCCE-EEEe--
Confidence 56688888888888876653 32 2221110 0 0125888888999988543 2222
Q ss_pred ccCChhHHHHHHHHHHHcCCcccceeee
Q 022982 125 LEIPEETLLRYVRLVKSAGLKAKPKFAV 152 (289)
Q Consensus 125 i~i~~~~r~~lI~~~~~~G~~v~~E~g~ 152 (289)
++...=.++|+.++..|+.+.-|+..
T Consensus 238 --~s~~~~~~~i~~~~~~g~~i~~e~~~ 263 (447)
T cd01315 238 --LSSAEAVPLIREARAEGVDVTVETCP 263 (447)
T ss_pred --CCCHHHHHHHHHHHHCCCceEEEecc
Confidence 22345568888899989887666543
No 468
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=60.38 E-value=11 Score=34.76 Aligned_cols=97 Identities=19% Similarity=0.255 Sum_probs=60.8
Q ss_pred ccChhHHHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcC
Q 022982 66 LMPKPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAG 143 (289)
Q Consensus 66 l~p~~~l~eKI~l~~~~gV~v~~G--tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G 143 (289)
++.+..-.+.++.|+++||.+.|| |.-|+.-. .++|++.|-+==.. .+. ..+|+.++.
T Consensus 95 iVsP~~~~~v~~~~~~~~i~~iPG~~TpsEi~~A-------------~~~Ga~~vKlFPA~-~~G----~~~ikal~~-- 154 (222)
T PRK07114 95 IVTPLFNPDIAKVCNRRKVPYSPGCGSLSEIGYA-------------EELGCEIVKLFPGS-VYG----PGFVKAIKG-- 154 (222)
T ss_pred EECCCCCHHHHHHHHHcCCCEeCCCCCHHHHHHH-------------HHCCCCEEEECccc-ccC----HHHHHHHhc--
Confidence 344456778889999999999998 78887644 46999999987533 233 356666655
Q ss_pred CcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEecccccc
Q 022982 144 LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK 211 (289)
Q Consensus 144 ~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d 211 (289)
++|.+-.. .+| + ++ + =.+.+..+|+|||.-|=+=+ .|++
T Consensus 155 --p~p~i~~~----ptG--G-------V~-----------~--~~~n~~~yl~aGa~avg~Gs-~L~~ 193 (222)
T PRK07114 155 --PMPWTKIM----PTG--G-------VE-----------P--TEENLKKWFGAGVTCVGMGS-KLIP 193 (222)
T ss_pred --cCCCCeEE----eCC--C-------CC-----------c--chhcHHHHHhCCCEEEEECh-hhcC
Confidence 44543331 111 1 00 0 01467788999988776533 3554
No 469
>PRK15447 putative protease; Provisional
Probab=60.36 E-value=41 Score=31.99 Aligned_cols=122 Identities=12% Similarity=0.109 Sum_probs=74.3
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcc----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCC
Q 022982 101 SAFKEYVEDCKQVGFDTIELNVGSL----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti----~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~ 176 (289)
++++.|...+.+.|.|+|=+..... .++.++..+.|+.++++|-+ +.+..+. ++. .
T Consensus 15 ~~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkk----vyva~p~-------------i~~---~ 74 (301)
T PRK15447 15 ETVRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKE----VVLSTLA-------------LVE---A 74 (301)
T ss_pred CCHHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCE----EEEEecc-------------ccc---C
Confidence 3899999999999999999986543 48999999999999998855 3332111 000 0
Q ss_pred CccccccHHHHHHHHHHHHHccCcEEEEecc---------cc---ccCCCCccHHHHHHHHhccCCCceEEecCCchhHH
Q 022982 177 STEYVEDVDLLIRRAERCLEAGADMIMIDSD---------DV---CKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSE 244 (289)
Q Consensus 177 ~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar---------GI---~d~~G~~r~d~v~~ii~~l~~eklifEAP~k~qQ~ 244 (289)
.+ =.+.+++.++.|.+.|++=.= |+ .|..=|+--..-.+...++|.+++..=-=..-.|.
T Consensus 75 -------~~-e~~~l~~~l~~~~~~v~v~d~g~l~~~~e~~~~l~~d~~lni~N~~a~~~l~~~G~~rv~ls~ELsl~eI 146 (301)
T PRK15447 75 -------PS-ELKELRRLVENGEFLVEANDLGAVRLLAERGLPFVAGPALNCYNAATLALLARLGATRWCMPVELSRDWL 146 (301)
T ss_pred -------HH-HHHHHHHHHhcCCCEEEEeCHHHHHHHHhcCCCEEEecccccCCHHHHHHHHHcCCcEEEECCcCCHHHH
Confidence 11 135666677888887775321 21 22232333334444566677777654222344455
Q ss_pred HHHHHh
Q 022982 245 WFIRRY 250 (289)
Q Consensus 245 ~~I~~f 250 (289)
.=|.+-
T Consensus 147 ~~i~~~ 152 (301)
T PRK15447 147 ANLLAQ 152 (301)
T ss_pred HHHHHh
Confidence 555444
No 470
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=59.70 E-value=1.2e+02 Score=26.26 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=18.7
Q ss_pred HHHHHHHHccCcEEEEeccccccCC
Q 022982 189 RRAERCLEAGADMIMIDSDDVCKHA 213 (289)
Q Consensus 189 ~~~~~dLeAGA~~ViiEarGI~d~~ 213 (289)
+.++..+++||+.|++= +.|++++
T Consensus 170 ~~i~~~~~~Gad~vvvG-sai~~~~ 193 (202)
T cd04726 170 DTLPEFKKAGADIVIVG-RAITGAA 193 (202)
T ss_pred HHHHHHHhcCCCEEEEe-ehhcCCC
Confidence 56788899999998886 4588654
No 471
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=59.57 E-value=1.4e+02 Score=28.56 Aligned_cols=190 Identities=15% Similarity=0.262 Sum_probs=113.2
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceec----CCc--H---HHH------HHHhC-----C-
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS----TGD--W---AEH------LIRNG-----P- 100 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~----~Gt--l---fE~------a~~qg-----~- 100 (289)
.++++|..|-+. +++-|.+-+++-+.++.-|+-|.+.+-++- +|+ + ++. .+.+. |
T Consensus 5 ~~~~~l~~A~~~----~yav~AfN~~n~e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~~~~~~~~~~~~a~~~~~~vPV 80 (293)
T PRK07315 5 SAEKFVQAARDN----GYAVGGFNTNNLEWTQAILRAAEAKKAPVLIQTSMGAAKYMGGYKVCKNLIENLVESMGITVPV 80 (293)
T ss_pred cHHHHHHHHHHC----CceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCcE
Confidence 566666665443 567788888888888888888888776543 221 1 121 11110 0
Q ss_pred ------chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHH----HHHHHcCCcccceeeeecCCCCCCCccccccccc
Q 022982 101 ------SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYV----RLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAY 170 (289)
Q Consensus 101 ------~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI----~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~ 170 (289)
..+ +.+..|-+.||+.|=+..-. +|.++..+.. +.++..|..|--|+|.-.+ .+|...+.
T Consensus 81 ~lHLDH~~~-~~i~~ai~~GftSVm~d~S~--l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g------~ed~~~g~- 150 (293)
T PRK07315 81 AIHLDHGHY-EDALECIEVGYTSIMFDGSH--LPVEENLKLAKEVVEKAHAKGISVEAEVGTIGG------EEDGIIGK- 150 (293)
T ss_pred EEECCCCCH-HHHHHHHHcCCCEEEEcCCC--CCHHHHHHHHHHHHHHHHHcCCEEEEecCcccC------cCccccCc-
Confidence 012 36788889999999998765 5566665554 4455578888777775211 12211110
Q ss_pred cccCCCCccccccHHHHHHHHHHHHHccCcEEEEe---ccccccCC-CCccHHHHHHHHhccC-CCceEEecC-CchhHH
Q 022982 171 VARAPRSTEYVEDVDLLIRRAERCLEAGADMIMID---SDDVCKHA-DSLRADIIAKVIGRLG-LEKTMFEAT-NPRTSE 244 (289)
Q Consensus 171 ~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiE---arGI~d~~-G~~r~d~v~~ii~~l~-~eklifEAP-~k~qQ~ 244 (289)
+ ...||++. +++.+.|+|++=+= .-|+|... -.++.+.+.+|-+.++ +--++-=.. .+..+.
T Consensus 151 -------s-~~t~peea----~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPlVlhGGSGi~~e~~ 218 (293)
T PRK07315 151 -------G-ELAPIEDA----KAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPGFPIVLHGGSGIPDDQI 218 (293)
T ss_pred -------c-CCCCHHHH----HHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhccCCCEEEECCCCCCHHHH
Confidence 0 01145554 44557899998776 23889763 5699999999998773 433444331 333444
Q ss_pred HHHHHhC-CCcccc
Q 022982 245 WFIRRYG-PKVNLF 257 (289)
Q Consensus 245 ~~I~~fG-~~VNLg 257 (289)
--+.+.| ..||++
T Consensus 219 ~~~i~~Gi~KiNv~ 232 (293)
T PRK07315 219 QEAIKLGVAKVNVN 232 (293)
T ss_pred HHHHHcCCCEEEEc
Confidence 4344444 457775
No 472
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=59.40 E-value=7 Score=35.41 Aligned_cols=95 Identities=18% Similarity=0.170 Sum_probs=59.3
Q ss_pred ChhHHHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCc
Q 022982 68 PKPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (289)
Q Consensus 68 p~~~l~eKI~l~~~~gV~v~~G--tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~ 145 (289)
++..-.+.++.|+++||.+.|| |.-|+.-. .++|++.|-+==...- -=..+|+.++.
T Consensus 86 SP~~~~~v~~~~~~~~i~~iPG~~TptEi~~A-------------~~~G~~~vK~FPA~~~----GG~~~ik~l~~---- 144 (196)
T PF01081_consen 86 SPGFDPEVIEYAREYGIPYIPGVMTPTEIMQA-------------LEAGADIVKLFPAGAL----GGPSYIKALRG---- 144 (196)
T ss_dssp ESS--HHHHHHHHHHTSEEEEEESSHHHHHHH-------------HHTT-SEEEETTTTTT----THHHHHHHHHT----
T ss_pred CCCCCHHHHHHHHHcCCcccCCcCCHHHHHHH-------------HHCCCCEEEEecchhc----CcHHHHHHHhc----
Confidence 3356678889999999999998 78888654 4689999987432210 01367877775
Q ss_pred ccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEeccccccC
Q 022982 146 AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKH 212 (289)
Q Consensus 146 v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~ 212 (289)
++|++... +...|. .+.+..+|++|+..|.+=+. ++++
T Consensus 145 p~p~~~~~-ptGGV~---------------------------~~N~~~~l~ag~~~vg~Gs~-L~~~ 182 (196)
T PF01081_consen 145 PFPDLPFM-PTGGVN---------------------------PDNLAEYLKAGAVAVGGGSW-LFPK 182 (196)
T ss_dssp TTTT-EEE-EBSS-----------------------------TTTHHHHHTSTTBSEEEESG-GGSH
T ss_pred cCCCCeEE-EcCCCC---------------------------HHHHHHHHhCCCEEEEECch-hcCH
Confidence 45555442 111111 35678899999999987553 4443
No 473
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=59.14 E-value=77 Score=31.83 Aligned_cols=121 Identities=13% Similarity=0.195 Sum_probs=75.9
Q ss_pred cccccEEEecCccccccChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCcccCC
Q 022982 51 GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLEIP 128 (289)
Q Consensus 51 g~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~~GtlfE~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti~i~ 128 (289)
|.-++-+=||+||..+. ++.|++.++.++++ ++ -|+.+.-+|+. -+++++.++++ |+.|+|- --+.+
T Consensus 99 ~~~~~siy~GGGTPs~l-~~~L~~ll~~i~~~f~i-------~eis~E~~P~~lt~e~L~~l~~~-vnrlsiG--VQS~~ 167 (433)
T PRK08629 99 GYDFESMYVGGGTTTIL-EDELAKTLELAKKLFSI-------KEVSCESDPNHLDPPKLKQLKGL-IDRLSIG--VQSFN 167 (433)
T ss_pred CCceEEEEECCCccccC-HHHHHHHHHHHHHhCCC-------ceEEEEeCcccCCHHHHHHHHHh-CCeEEEe--cCcCC
Confidence 45588899999999997 57799999999886 22 14444344444 35788899999 9987664 44443
Q ss_pred hhHH------------HHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHH
Q 022982 129 EETL------------LRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCL 195 (289)
Q Consensus 129 ~~~r------------~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dL 195 (289)
++.. .+.++.++.. +. .+.+++-. . +| -|. +|.+++.+.++..+
T Consensus 168 d~vLk~~gR~h~~~~~~~~~~~l~~~~~~--~~~v~~Dl-I--~G-----------lPg-------qT~e~~~~~l~~~~ 224 (433)
T PRK08629 168 DDILKMVDRYEKFGSGQETFEKIMKAKGL--FPIINVDL-I--FN-----------FPG-------QTDEVLQHDLDIAK 224 (433)
T ss_pred HHHHHHcCCCCChhHHHHHHHHHHHHhcc--CCeEEEEE-E--cc-----------CCC-------CCHHHHHHHHHHHH
Confidence 3332 3334444442 21 22333311 0 01 011 24788899999999
Q ss_pred HccCcEEEEe
Q 022982 196 EAGADMIMID 205 (289)
Q Consensus 196 eAGA~~ViiE 205 (289)
+.|.+.|-+=
T Consensus 225 ~l~p~~is~y 234 (433)
T PRK08629 225 RLDPRQITTY 234 (433)
T ss_pred hCCCCEEEEc
Confidence 9999987554
No 474
>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin. The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.
Probab=59.10 E-value=98 Score=30.30 Aligned_cols=95 Identities=13% Similarity=0.132 Sum_probs=60.8
Q ss_pred ccEEEecCccc--cccChhHHHHHHHHHHhCCceecC--Cc--HHHHHHH----hCCc----------------hHHHHH
Q 022982 54 VDGLKFSGGSH--SLMPKPFIEEVVKRAHQHDVYVST--GD--WAEHLIR----NGPS----------------AFKEYV 107 (289)
Q Consensus 54 ID~lKfg~GTs--~l~p~~~l~eKI~l~~~~gV~v~~--Gt--lfE~a~~----qg~~----------------~~~~yl 107 (289)
++.+|+..+.. ...+.+.+++-++.++++|+.+.. -+ +.+.+.. +|.. .+...+
T Consensus 144 ~~~ik~~~~~~~~~~~s~~~l~~~~~~a~~~g~~v~~H~E~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~ 223 (447)
T cd01314 144 ISSFKVFMAYKGLLMVDDEELLDVLKRAKELGALVMVHAENGDVIAELQKKLLAQGKTGPEYHALSRPPEVEAEATARAI 223 (447)
T ss_pred CCEEEEEeccCCCCCCCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHHHcCCCChHHhhhcCCHHHHHHHHHHHH
Confidence 46678754332 334778899999999999987753 22 3332221 1311 122335
Q ss_pred HHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeee
Q 022982 108 EDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVM 153 (289)
Q Consensus 108 ~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k 153 (289)
+.++.+|...+ ..-++..+-.++|+.+++.|..+.-|+...
T Consensus 224 ~la~~~~~~~~-----~~H~s~~~~~~~i~~~k~~g~~v~~~~~ph 264 (447)
T cd01314 224 RLAELAGAPLY-----IVHVSSKEAADEIARARKKGLPVYGETCPQ 264 (447)
T ss_pred HHHHHhCCCEE-----EEeCCCHHHHHHHHHHHHCCCeEEEecCch
Confidence 66778888776 556667777789999999998776566553
No 475
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=58.95 E-value=20 Score=34.21 Aligned_cols=50 Identities=18% Similarity=0.338 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCC
Q 022982 71 FIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVG 123 (289)
Q Consensus 71 ~l~eKI~l~~~~gV~v~~G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdG 123 (289)
.+.+-|+.++++|+.+..- |.+. ..+.+.+.++++.++++|++.|-+|-+
T Consensus 150 ~~l~~I~~l~~~G~~v~v~~tv~~---~~n~~ei~~~~~~~~~lGv~~i~i~p~ 200 (318)
T TIGR03470 150 RAVEAIREAKARGFRVTTNTTLFN---DTDPEEVAEFFDYLTDLGVDGMTISPG 200 (318)
T ss_pred HHHHHHHHHHHCCCcEEEEEEEeC---CCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 3456666666666655443 2221 133346677777777777777766654
No 476
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=58.90 E-value=43 Score=30.33 Aligned_cols=84 Identities=18% Similarity=0.118 Sum_probs=52.6
Q ss_pred ChhHHHHHHHHHHhCCceecC---CcH--H------HHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc--cC-Ch----
Q 022982 68 PKPFIEEVVKRAHQHDVYVST---GDW--A------EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL--EI-PE---- 129 (289)
Q Consensus 68 p~~~l~eKI~l~~~~gV~v~~---Gtl--f------E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti--~i-~~---- 129 (289)
+.+.+++--+.++++||.++. ++. + +....+.-+.+++.++.|+.||.+.|=+..+.. .- +.
T Consensus 50 ~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~ 129 (284)
T PRK13210 50 SKEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQ 129 (284)
T ss_pred CHHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEECCcccccccccHHHHH
Confidence 345588888899999997652 210 1 111111112588999999999999998753321 11 11
Q ss_pred ---hHHHHHHHHHHHcCCcccceee
Q 022982 130 ---ETLLRYVRLVKSAGLKAKPKFA 151 (289)
Q Consensus 130 ---~~r~~lI~~~~~~G~~v~~E~g 151 (289)
+...++.+.+++.|.+..-|..
T Consensus 130 ~~~~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 130 RFIEGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEec
Confidence 1245567788888888776663
No 477
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=58.82 E-value=73 Score=28.48 Aligned_cols=84 Identities=20% Similarity=0.266 Sum_probs=54.6
Q ss_pred HHHHHHHHHHc---CCCEEEecCCccc-CChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCC
Q 022982 103 FKEYVEDCKQV---GFDTIELNVGSLE-IPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (289)
Q Consensus 103 ~~~yl~~~k~l---GF~~IEISdGti~-i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 177 (289)
.++.++.++++ |.|+||+=-..+. .+.+...+.++.+++. ++.++--+--+..+ |. +
T Consensus 9 ~~~~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~~~~l~~lr~~~~~piI~T~R~~~eG-----------G~------~- 70 (224)
T PF01487_consen 9 LEELLAELEEAESSGADAVELRLDYLENDSAEDISEQLAELRRSLDLPIIFTVRTKEEG-----------GR------F- 70 (224)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEGGGSTTTSHHHHHHHHHHHHHHCTSEEEEE--BGGGT-----------SS------B-
T ss_pred HHHHHHHHHHHHhcCCCEEEEEeccccccChHHHHHHHHHHHHhCCCCEEEEecccccC-----------CC------C-
Confidence 44444444444 9999999877776 5566667778877664 44444333221110 00 0
Q ss_pred ccccccHHHHHHHHHHHHHccCcEEEEecc
Q 022982 178 TEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 178 ~~~~~~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
..+.++..+..+..++.|+++|=||..
T Consensus 71 ---~~~~~~~~~ll~~~~~~~~d~iDiE~~ 97 (224)
T PF01487_consen 71 ---QGSEEEYLELLERAIRLGPDYIDIELD 97 (224)
T ss_dssp ---SS-HHHHHHHHHHHHHHTSSEEEEEGG
T ss_pred ---cCCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 124788999999999999999999986
No 478
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=58.69 E-value=27 Score=35.95 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=15.6
Q ss_pred HHHHHHHHccCcEEEEecc
Q 022982 189 RRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 189 ~~~~~dLeAGA~~ViiEar 207 (289)
..+.+.|++||+.||+=+.
T Consensus 364 ~di~kAla~GA~~V~vGs~ 382 (505)
T PLN02274 364 GHIVKALTLGASTVMMGSF 382 (505)
T ss_pred HHHHHHHHcCCCEEEEchh
Confidence 5667799999999999663
No 479
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=58.69 E-value=49 Score=32.55 Aligned_cols=21 Identities=19% Similarity=0.531 Sum_probs=16.9
Q ss_pred HHHHHHHHcCCCEEEecCCcc
Q 022982 105 EYVEDCKQVGFDTIELNVGSL 125 (289)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti 125 (289)
++.+.+.+.|.|.|+||.|+.
T Consensus 256 ~~~~~l~~~gvD~l~vs~g~~ 276 (382)
T cd02931 256 KAAKILEEAGYDALDVDAGSY 276 (382)
T ss_pred HHHHHHHHhCCCEEEeCCCCC
Confidence 455666677999999999974
No 480
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=58.62 E-value=1.5e+02 Score=27.31 Aligned_cols=155 Identities=15% Similarity=0.186 Sum_probs=83.3
Q ss_pred ccEEEecCccc---cccChhHHHHHHHHHHhC---CceecCC--c-HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCC-
Q 022982 54 VDGLKFSGGSH---SLMPKPFIEEVVKRAHQH---DVYVSTG--D-WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVG- 123 (289)
Q Consensus 54 ID~lKfg~GTs---~l~p~~~l~eKI~l~~~~---gV~v~~G--t-lfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdG- 123 (289)
+|.+=+. ||+ ..+..+.-++.++.+.++ .+++..| + =.+ ..-++.+.++++|+|+|-+.--
T Consensus 35 v~gl~v~-GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~--------~~~~~a~~a~~~G~d~v~~~~P~ 105 (284)
T cd00950 35 TDGLVVC-GTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTA--------EAIELTKRAEKAGADAALVVTPY 105 (284)
T ss_pred CCEEEEC-CCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHH--------HHHHHHHHHHHcCCCEEEEcccc
Confidence 7777655 343 344444455566655555 4666654 2 122 3456678889999999988854
Q ss_pred cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHHHHHHHHHccCcEEE
Q 022982 124 SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIM 203 (289)
Q Consensus 124 ti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~Vi 203 (289)
+...++++-.++.+.+.+. .-+| +-+-+.-+- .+..+ +++.+.+.++ . . ..|
T Consensus 106 ~~~~~~~~l~~~~~~ia~~--~~~p-i~lYn~P~~--------~g~~l-----------s~~~~~~L~~-~---p-~v~- 157 (284)
T cd00950 106 YNKPSQEGLYAHFKAIAEA--TDLP-VILYNVPGR--------TGVNI-----------EPETVLRLAE-H---P-NIV- 157 (284)
T ss_pred cCCCCHHHHHHHHHHHHhc--CCCC-EEEEEChhH--------hCCCC-----------CHHHHHHHhc-C---C-CEE-
Confidence 4456777777777777774 1122 222211000 01222 3554444442 1 1 222
Q ss_pred EeccccccCCCCccHHHHHHHHhccCCCceEEecCCchhHHHHHHHhCCC
Q 022982 204 IDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYGPK 253 (289)
Q Consensus 204 iEarGI~d~~G~~r~d~v~~ii~~l~~eklifEAP~k~qQ~~~I~~fG~~ 253 (289)
||=+..++ ...+.+++...+.+--+|...+.. .... ...|.+
T Consensus 158 ----giK~s~~~--~~~~~~~~~~~~~~~~v~~G~d~~-~~~~-~~~G~~ 199 (284)
T cd00950 158 ----GIKEATGD--LDRVSELIALCPDDFAVLSGDDAL-TLPF-LALGGV 199 (284)
T ss_pred ----EEEECCCC--HHHHHHHHHhCCCCeEEEeCChHh-HHHH-HHCCCC
Confidence 44444454 355666777777666788887643 2232 356766
No 481
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=58.49 E-value=82 Score=30.54 Aligned_cols=80 Identities=24% Similarity=0.279 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHcC--CCEEEecCCcccC-------ChhHHHHHHHHHHHc--CCc---ccceeeeecCCCCCCCcccccc
Q 022982 102 AFKEYVEDCKQVG--FDTIELNVGSLEI-------PEETLLRYVRLVKSA--GLK---AKPKFAVMFNKSDIPSDRDRAF 167 (289)
Q Consensus 102 ~~~~yl~~~k~lG--F~~IEISdGti~i-------~~~~r~~lI~~~~~~--G~~---v~~E~g~k~~~~evg~~~d~~~ 167 (289)
..++|.+.++.++ .|++|++-.+-.. ..+...++++.+++. ++. -+| +.+|-.
T Consensus 152 ~~~dy~~~~~~~~~~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~P-v~vKLs------------ 218 (335)
T TIGR01036 152 AKEDYAACLRKLGPLADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVP-VLVKIA------------ 218 (335)
T ss_pred CHHHHHHHHHHHhhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCc-eEEEeC------------
Confidence 6889999999999 9999997543322 334555667776652 100 034 333321
Q ss_pred ccccccCCCCccccccHHHHHHHHHHHHHccCcEEEEec
Q 022982 168 GAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (289)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEa 206 (289)
|.- +-+++.+.++...++||+-|++=-
T Consensus 219 -----P~~-------~~~~i~~ia~~~~~~GadGi~l~N 245 (335)
T TIGR01036 219 -----PDL-------TESDLEDIADSLVELGIDGVIATN 245 (335)
T ss_pred -----CCC-------CHHHHHHHHHHHHHhCCcEEEEEC
Confidence 110 134567778888899999888643
No 482
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=58.30 E-value=42 Score=32.40 Aligned_cols=78 Identities=19% Similarity=0.275 Sum_probs=49.4
Q ss_pred HHHHHHcCCCEEEecCCcc-------------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccc
Q 022982 107 VEDCKQVGFDTIELNVGSL-------------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVAR 173 (289)
Q Consensus 107 l~~~k~lGF~~IEISdGti-------------~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~ 173 (289)
.+.+.+.|||.|+|+=|+= --.++.-.++++.+++. . -+| +.+|-... ..++
T Consensus 73 A~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~-~-~~P-VsvKiR~g---~~~~--------- 137 (318)
T TIGR00742 73 AKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEA-V-NIP-VTVKHRIG---IDPL--------- 137 (318)
T ss_pred HHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHH-h-CCC-eEEEEecC---CCCc---------
Confidence 3444567999999988762 12233346777777763 1 123 66665321 0000
Q ss_pred CCCCccccccHHHHHHHHHHHHHccCcEEEEecc
Q 022982 174 APRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 174 ~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
.+.+.+++.++...++||+.|.|-+|
T Consensus 138 --------~~~~~~~~~~~~l~~~G~~~itvHgR 163 (318)
T TIGR00742 138 --------DSYEFLCDFVEIVSGKGCQNFIVHAR 163 (318)
T ss_pred --------chHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 12466778888888999999999998
No 483
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=58.29 E-value=96 Score=27.53 Aligned_cols=73 Identities=15% Similarity=0.163 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHcCCCEEEecC--CcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcc
Q 022982 102 AFKEYVEDCKQVGFDTIELNV--GSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTE 179 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISd--Gti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~ 179 (289)
...++.+...+.|++.+-|.| |+.. ....-.++|+++.+. +.-.+-+..+
T Consensus 31 ~~~~~a~~~~~~g~~~i~v~dld~~~~-g~~~~~~~i~~i~~~---~~~pv~~~GG------------------------ 82 (233)
T PRK00748 31 DPVAQAKAWEDQGAKWLHLVDLDGAKA-GKPVNLELIEAIVKA---VDIPVQVGGG------------------------ 82 (233)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCcccc-CCcccHHHHHHHHHH---CCCCEEEcCC------------------------
Confidence 566777777889999999999 5432 222335677777663 1001222110
Q ss_pred ccccHHHHHHHHHHHHHccCcEEEEecc
Q 022982 180 YVEDVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 180 ~~~~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
+.+ .+.+++.+++||+.|++=+.
T Consensus 83 -I~~----~ed~~~~~~~Ga~~vilg~~ 105 (233)
T PRK00748 83 -IRS----LETVEALLDAGVSRVIIGTA 105 (233)
T ss_pred -cCC----HHHHHHHHHcCCCEEEECch
Confidence 111 46667778899999987654
No 484
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=58.24 E-value=22 Score=37.24 Aligned_cols=49 Identities=20% Similarity=0.350 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCCEEEecC----------Ccc-----cC-----ChhHHHHHHHHHHHcCCcccceeee
Q 022982 104 KEYVEDCKQVGFDTIELNV----------GSL-----EI-----PEETLLRYVRLVKSAGLKAKPKFAV 152 (289)
Q Consensus 104 ~~yl~~~k~lGF~~IEISd----------Gti-----~i-----~~~~r~~lI~~~~~~G~~v~~E~g~ 152 (289)
++.+.++++||+++||++- |.- .+ +.++..++|+.+.++|++|+-.+-.
T Consensus 160 ~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~ 228 (613)
T TIGR01515 160 DQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVP 228 (613)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 3445788999999999943 111 11 2568899999999999999887754
No 485
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=58.21 E-value=44 Score=32.32 Aligned_cols=41 Identities=17% Similarity=0.440 Sum_probs=32.2
Q ss_pred HHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecC
Q 022982 188 IRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT 238 (289)
Q Consensus 188 I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklifEAP 238 (289)
+++++..++||||.||.+ |+..+.+.+.++.++ .+++.||.
T Consensus 215 leea~eA~~aGaDiImLD---------nmspe~l~~av~~~~-~~~~lEaS 255 (294)
T PRK06978 215 LAQLETALAHGAQSVLLD---------NFTLDMMREAVRVTA-GRAVLEVS 255 (294)
T ss_pred HHHHHHHHHcCCCEEEEC---------CCCHHHHHHHHHhhc-CCeEEEEE
Confidence 688888999999999995 667777777776554 36777776
No 486
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=58.11 E-value=76 Score=28.25 Aligned_cols=96 Identities=15% Similarity=0.163 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC-ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEI-PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i-~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 180 (289)
..-++.+...+.|++.+=|=|=.-.. ....-.++|+++.+.= .-.+.+..+ +.+
T Consensus 29 dp~~~a~~~~~~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~~~---~~pi~~ggG--------------I~~-------- 83 (230)
T TIGR00007 29 DPVEAAKKWEEEGAERIHVVDLDGAKEGGPVNLPVIKKIVRET---GVPVQVGGG--------------IRS-------- 83 (230)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccCCCCcHHHHHHHHHhc---CCCEEEeCC--------------cCC--------
Confidence 45556666688999988773222221 1111246777776630 001222111 011
Q ss_pred cccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEE
Q 022982 181 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMF 235 (289)
Q Consensus 181 ~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklif 235 (289)
.+.+++.+++||+.|++=+.-+- ..+.+.+++++++.++++.
T Consensus 84 -------~ed~~~~~~~Ga~~vvlgs~~l~------d~~~~~~~~~~~g~~~i~~ 125 (230)
T TIGR00007 84 -------LEDVEKLLDLGVDRVIIGTAAVE------NPDLVKELLKEYGPERIVV 125 (230)
T ss_pred -------HHHHHHHHHcCCCEEEEChHHhh------CHHHHHHHHHHhCCCcEEE
Confidence 57778888999999988443221 2577888888888888774
No 487
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=58.08 E-value=4.9 Score=33.92 Aligned_cols=99 Identities=13% Similarity=0.116 Sum_probs=58.9
Q ss_pred ccEEEecCccccccC--hhHHHHHHHHHHhCCceecCC---c-HHHHH---------HHhCCchHHHHHHHHHHcCCCEE
Q 022982 54 VDGLKFSGGSHSLMP--KPFIEEVVKRAHQHDVYVSTG---D-WAEHL---------IRNGPSAFKEYVEDCKQVGFDTI 118 (289)
Q Consensus 54 ID~lKfg~GTs~l~p--~~~l~eKI~l~~~~gV~v~~G---t-lfE~a---------~~qg~~~~~~yl~~~k~lGF~~I 118 (289)
.|.+-+......... .+.+++-.++++++||.+..- + +...- -.+.-+.+++.++.|+.+|.+.|
T Consensus 9 ~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lg~~~i 88 (213)
T PF01261_consen 9 FDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRLGAKYI 88 (213)
T ss_dssp HSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHHTBSEE
T ss_pred CCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHhCCCce
Confidence 344444443333333 246889999999999984431 1 11100 00001268999999999999999
Q ss_pred EecCC----cccCChh--------HHHHHHHHHHHcCCcccceeee
Q 022982 119 ELNVG----SLEIPEE--------TLLRYVRLVKSAGLKAKPKFAV 152 (289)
Q Consensus 119 EISdG----ti~i~~~--------~r~~lI~~~~~~G~~v~~E~g~ 152 (289)
=+.-| .-..+.+ ...++.+.+++.|+++.-|-.-
T Consensus 89 ~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~ 134 (213)
T PF01261_consen 89 VVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHP 134 (213)
T ss_dssp EEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SS
T ss_pred eecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEeccc
Confidence 99977 2222222 3345666777778776665433
No 488
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=58.07 E-value=37 Score=29.46 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=26.4
Q ss_pred chHHHHHHHHHHcCCCEEEec--CCcccCChhHHHHHHHHHHH
Q 022982 101 SAFKEYVEDCKQVGFDTIELN--VGSLEIPEETLLRYVRLVKS 141 (289)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEIS--dGti~i~~~~r~~lI~~~~~ 141 (289)
..+.+-++.+.+.|.|+||+- ||..-=....=.+.++.+++
T Consensus 11 ~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~ 53 (210)
T TIGR01163 11 ARLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRK 53 (210)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHh
Confidence 478888999999999999993 44441111122345555555
No 489
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=58.05 E-value=1.1e+02 Score=25.59 Aligned_cols=99 Identities=21% Similarity=0.221 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCC---hhHHHHHHHHHHHc---CCcccceeeeecCCCCCCCccccccccccccCC
Q 022982 102 AFKEYVEDCKQVGFDTIELNVGSLEIP---EETLLRYVRLVKSA---GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (289)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~---~~~r~~lI~~~~~~---G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~ 175 (289)
..-+..+.|++.|.|+|.+-.-.--.+ .+.-.+.++.+.+. ++.+....-. ..
T Consensus 66 ~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p---------------------~~ 124 (201)
T cd00945 66 VKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILET---------------------RG 124 (201)
T ss_pred HHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEEC---------------------CC
Confidence 466778899999999999864443222 46666777777774 4332221111 11
Q ss_pred CCccccccHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccC
Q 022982 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (289)
Q Consensus 176 ~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~ 229 (289)
. .+++.+.+.++..-++|++.|=.- .|-+. +....+.+.++.+.++
T Consensus 125 ~-----~~~~~~~~~~~~~~~~g~~~iK~~-~~~~~--~~~~~~~~~~i~~~~~ 170 (201)
T cd00945 125 L-----KTADEIAKAARIAAEAGADFIKTS-TGFGG--GGATVEDVKLMKEAVG 170 (201)
T ss_pred C-----CCHHHHHHHHHHHHHhCCCEEEeC-CCCCC--CCCCHHHHHHHHHhcc
Confidence 0 135666666665567899977532 22221 2334556666665443
No 490
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=57.85 E-value=1.2e+02 Score=30.07 Aligned_cols=125 Identities=16% Similarity=0.107 Sum_probs=77.0
Q ss_pred HHHHHHHHHcCCCEEEecCCc---------ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccC
Q 022982 104 KEYVEDCKQVGFDTIELNVGS---------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (289)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGt---------i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 174 (289)
++..+.+++.|.+++.-+=-| .+-+-++|.+-++.+++.|++|-+ |.=.+..|
T Consensus 144 ~eq~~~L~~aGvd~ynhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcs--GgI~GlGE---------------- 205 (335)
T COG0502 144 EEQAEKLADAGVDRYNHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCS--GGIVGLGE---------------- 205 (335)
T ss_pred HHHHHHHHHcChhheecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCcccc--ceEecCCC----------------
Confidence 566777899999988873333 367889999999999999999887 22122211
Q ss_pred CCCccccccHHHHHHHHHHHHHcc-CcEEEEec----cc-cccCCCCccHHHHHHHH--hc--cCCCceEEecCCc---h
Q 022982 175 PRSTEYVEDVDLLIRRAERCLEAG-ADMIMIDS----DD-VCKHADSLRADIIAKVI--GR--LGLEKTMFEATNP---R 241 (289)
Q Consensus 175 ~~~~~~~~~~~~~I~~~~~dLeAG-A~~ViiEa----rG-I~d~~G~~r~d~v~~ii--~~--l~~eklifEAP~k---~ 241 (289)
+.+++|+.+..-.+-. .+.|=|-. .| -+.+.-.+.....-+++ .+ +|-..|.+=|+.. .
T Consensus 206 --------s~eDri~~l~~L~~l~~pdsVPIn~l~P~~GTPle~~~~~~~~e~lk~IA~~Ri~~P~~~Ir~s~gr~~~~~ 277 (335)
T COG0502 206 --------TVEDRAELLLELANLPTPDSVPINFLNPIPGTPLENAKPLDPFEFLKTIAVARIIMPKSMIRLSAGRETMLP 277 (335)
T ss_pred --------CHHHHHHHHHHHHhCCCCCeeeeeeecCCCCCccccCCCCCHHHHHHHHHHHHHHCCcceeEccCCcccccH
Confidence 4677788877777777 89888766 24 23333344443333333 22 4555555544422 2
Q ss_pred hHHHHHHHhCCCc
Q 022982 242 TSEWFIRRYGPKV 254 (289)
Q Consensus 242 qQ~~~I~~fG~~V 254 (289)
+.+.+.-..|.|.
T Consensus 278 ~~q~~~~~aGans 290 (335)
T COG0502 278 ELQALAFMAGANS 290 (335)
T ss_pred HHHHHHHHhccce
Confidence 2344555556654
No 491
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=57.72 E-value=14 Score=30.26 Aligned_cols=42 Identities=19% Similarity=0.397 Sum_probs=32.5
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccc
Q 022982 100 PSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAK 147 (289)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~ 147 (289)
++...+.+++|.++|...|=+-.| ..-.++++.++++|+++.
T Consensus 65 ~~~~~~~v~~~~~~g~~~v~~~~g------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 65 PDKVPEIVDEAAALGVKAVWLQPG------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp HHHHHHHHHHHHHHT-SEEEE-TT------S--HHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcc------hHHHHHHHHHHHcCCEEE
Confidence 348999999999999999999888 445689999999999876
No 492
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=57.64 E-value=1e+02 Score=28.67 Aligned_cols=19 Identities=26% Similarity=0.597 Sum_probs=15.4
Q ss_pred HHHHHHHHccCcEEEEecc
Q 022982 189 RRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 189 ~~~~~dLeAGA~~ViiEar 207 (289)
++++..+++|||-|++=+-
T Consensus 211 e~~~~~~~~GADgvVvGSa 229 (256)
T TIGR00262 211 EQVKQAIDAGADGVIVGSA 229 (256)
T ss_pred HHHHHHHHcCCCEEEECHH
Confidence 5777788999999988553
No 493
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=57.61 E-value=1.1e+02 Score=28.25 Aligned_cols=69 Identities=13% Similarity=0.185 Sum_probs=43.0
Q ss_pred HHHHHHHHhCCceecC-C--c---HHHHHHHhCCchHHHH---HHHHHHcCCCEEEec--CCcccCChhHHHHHHHHHHH
Q 022982 73 EEVVKRAHQHDVYVST-G--D---WAEHLIRNGPSAFKEY---VEDCKQVGFDTIELN--VGSLEIPEETLLRYVRLVKS 141 (289)
Q Consensus 73 ~eKI~l~~~~gV~v~~-G--t---lfE~a~~qg~~~~~~y---l~~~k~lGF~~IEIS--dGti~i~~~~r~~lI~~~~~ 141 (289)
++.++.++++|+..+. | + .++... +...++++ ++.+++.|+.. -.. -|. .-+.++..+.++.+++
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~--~~~s~~~~~~ai~~l~~~Gi~v-~~~~i~Gl-~et~~d~~~~~~~l~~ 198 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNII--STHTYDDRVDTLENAKKAGLKV-CSGGIFGL-GETVEDRIGLALALAN 198 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhcc--CCCCHHHHHHHHHHHHHcCCEE-EEeEEEeC-CCCHHHHHHHHHHHHh
Confidence 5678889999985443 3 1 222222 22366666 66778889862 111 232 3467888899999998
Q ss_pred cCCc
Q 022982 142 AGLK 145 (289)
Q Consensus 142 ~G~~ 145 (289)
.|..
T Consensus 199 l~~~ 202 (296)
T TIGR00433 199 LPPE 202 (296)
T ss_pred CCCC
Confidence 8765
No 494
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=57.59 E-value=32 Score=35.29 Aligned_cols=70 Identities=20% Similarity=0.313 Sum_probs=44.6
Q ss_pred HHHHHHHHcCCCEEEec--CCcccC---------ChhHH-HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccc
Q 022982 105 EYVEDCKQVGFDTIELN--VGSLEI---------PEETL-LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVA 172 (289)
Q Consensus 105 ~yl~~~k~lGF~~IEIS--dGti~i---------~~~~r-~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~ 172 (289)
+=.+.+.+.|.|+|-|+ -|++-. |.-.- .++.+.+++.|..++++=|+++
T Consensus 294 ~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~------------------ 355 (495)
T PTZ00314 294 DQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKN------------------ 355 (495)
T ss_pred HHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCC------------------
Confidence 34556788999999875 444322 32222 2444555666776666666633
Q ss_pred cCCCCccccccHHHHHHHHHHHHHccCcEEEEecc
Q 022982 173 RAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (289)
Q Consensus 173 ~~~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEar 207 (289)
-..+.+.|++||+.||+=+.
T Consensus 356 ---------------~~di~kAla~GA~~Vm~G~~ 375 (495)
T PTZ00314 356 ---------------SGDICKALALGADCVMLGSL 375 (495)
T ss_pred ---------------HHHHHHHHHcCCCEEEECch
Confidence 24566788999999998653
No 495
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=57.47 E-value=1.5e+02 Score=29.96 Aligned_cols=143 Identities=19% Similarity=0.254 Sum_probs=90.0
Q ss_pred HHHHHHHhhcccccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 022982 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (289)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (289)
.+-..|+.+| +|++=.||..+.-...+.++.... ..+. +. ..+++-..- ..++=++.+.+-|.+.|-|-
T Consensus 28 ~Ia~~Ld~lG--v~~IE~g~p~~s~~~~~~~~~i~~---~~~~--~~--~~~~~~~~~--~~~~~~ea~~~a~~~~i~if 96 (409)
T COG0119 28 RIAKALDDLG--VDYIEAGFPVASPGDFEFVRAIAE---KAGL--FI--CALIAALAR--AIKRDIEALLEAGVDRIHIF 96 (409)
T ss_pred HHHHHHHHcC--CCEEEEeCCcCChhhHHHHHHHHH---hcCc--cc--chhhhhhHH--hHHhhHHHHHhCCCCEEEEE
Confidence 3455566666 678888887766665554444443 3333 11 222322222 56667888999999998887
Q ss_pred CCcccCChh------------HHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHH
Q 022982 122 VGSLEIPEE------------TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (289)
Q Consensus 122 dGti~i~~~------------~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~ 189 (289)
..+-++-.+ .-...|+.++++|+.+. +... |.. -.+++.+++
T Consensus 97 ~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~--~~~E----------d~~--------------rt~~~~l~~ 150 (409)
T COG0119 97 IATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVR--FSAE----------DAT--------------RTDPEFLAE 150 (409)
T ss_pred EcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE--EEee----------ccc--------------cCCHHHHHH
Confidence 666544332 23356778888874322 2121 110 126899999
Q ss_pred HHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHh
Q 022982 190 RAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIG 226 (289)
Q Consensus 190 ~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~ 226 (289)
.++...++||+.|. ++|..|-..+..+.++++
T Consensus 151 ~~~~~~~~ga~~i~-----l~DTvG~~~P~~~~~~i~ 182 (409)
T COG0119 151 VVKAAIEAGADRIN-----LPDTVGVATPNEVADIIE 182 (409)
T ss_pred HHHHHHHcCCcEEE-----ECCCcCccCHHHHHHHHH
Confidence 99999999998885 678888877777777665
No 496
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=57.16 E-value=85 Score=29.03 Aligned_cols=92 Identities=12% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCEEEecCCccc-CChhHHHHHHHHHHH-cCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 022982 105 EYVEDCKQVGFDTIELNVGSLE-IPEETLLRYVRLVKS-AGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (289)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~-i~~~~r~~lI~~~~~-~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 182 (289)
+..+...+.|++.+=|-|=.-. .....-..+|+++.+ .++.+.--=|+..
T Consensus 34 ~~a~~~~~~g~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~gGGi~s---------------------------- 85 (258)
T PRK01033 34 NAVRIFNEKEVDELIVLDIDASKRGSEPNYELIENLASECFMPLCYGGGIKT---------------------------- 85 (258)
T ss_pred HHHHHHHHcCCCEEEEEECCCCcCCCcccHHHHHHHHHhCCCCEEECCCCCC----------------------------
Q ss_pred cHHHHHHHHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEE
Q 022982 183 DVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMF 235 (289)
Q Consensus 183 ~~~~~I~~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~~eklif 235 (289)
++.+++.+++||+.|++ +..++.+ .+++.+++++++-++++.
T Consensus 86 -----~~d~~~l~~~G~~~vvi-gs~~~~~-----~~~~~~~~~~~~~~~i~v 127 (258)
T PRK01033 86 -----LEQAKKIFSLGVEKVSI-NTAALED-----PDLITEAAERFGSQSVVV 127 (258)
T ss_pred -----HHHHHHHHHCCCCEEEE-ChHHhcC-----HHHHHHHHHHhCCCcEEE
No 497
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=57.13 E-value=1.3e+02 Score=28.03 Aligned_cols=74 Identities=16% Similarity=0.188 Sum_probs=52.6
Q ss_pred HHHHHHHHHhC-CceecCCc----HHHHHHHhCCc--------hHHHHHHHHHHcCCCEEEecCCcccCC----------
Q 022982 72 IEEVVKRAHQH-DVYVSTGD----WAEHLIRNGPS--------AFKEYVEDCKQVGFDTIELNVGSLEIP---------- 128 (289)
Q Consensus 72 l~eKI~l~~~~-gV~v~~Gt----lfE~a~~qg~~--------~~~~yl~~~k~lGF~~IEISdGti~i~---------- 128 (289)
|+..++.+++. +++++--| -+|.|+..|.+ ..++.+..+++.|..+|=+.+..+.-+
T Consensus 63 l~~~v~~~~~~~~~plsiDT~~~~vi~~al~~G~~iINsis~~~~~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~ 142 (257)
T TIGR01496 63 VVPVIKALRDQPDVPISVDTYRAEVARAALEAGADIINDVSGGQDPAMLEVAAEYGVPLVLMHMRGTPRTMQENPHYEDV 142 (257)
T ss_pred HHHHHHHHHhcCCCeEEEeCCCHHHHHHHHHcCCCEEEECCCCCCchhHHHHHHcCCcEEEEeCCCCCcccccCCCcccH
Confidence 88888999887 99998653 58889887632 155689999999999998876433222
Q ss_pred hhHH----HHHHHHHHHcCCc
Q 022982 129 EETL----LRYVRLVKSAGLK 145 (289)
Q Consensus 129 ~~~r----~~lI~~~~~~G~~ 145 (289)
.+++ .+.|+++.+.|++
T Consensus 143 ~~~~~~~~~~~i~~~~~~Gi~ 163 (257)
T TIGR01496 143 VEEVLRFLEARAEELVAAGVA 163 (257)
T ss_pred HHHHHHHHHHHHHHHHHcCCC
Confidence 1223 3556677887774
No 498
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=57.05 E-value=12 Score=34.36 Aligned_cols=58 Identities=19% Similarity=0.338 Sum_probs=34.1
Q ss_pred hhcccccEEEecCccccccChhHHHHHHHHHHhCCcee---cC----C-cHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022982 49 SMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV---ST----G-DWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (289)
Q Consensus 49 ~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v---~~----G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (289)
+|+-|-|....|-=+-.+.| +.+.+.|+.+ -+ | ++|+.+=.+ .+++|.+.+++.|..+
T Consensus 118 VAaGYaDa~Rvgsv~Pl~~P--------~vaa~ag~DvaMvDTaiKDGkslFdfm~~e---~l~eFvd~Ah~hGL~~ 183 (235)
T COG1891 118 VAAGYADAHRVGSVSPLLLP--------EVAAEAGADVAMVDTAIKDGKSLFDFMDEE---ELEEFVDLAHEHGLEV 183 (235)
T ss_pred EeccccchhhccCcCccccH--------HHHHhcCCCEEEEecccccchhHHhhhcHH---HHHHHHHHHHHcchHH
Confidence 45667777777754444444 2344555422 22 4 477766554 6777777777777653
No 499
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=56.99 E-value=13 Score=33.65 Aligned_cols=75 Identities=24% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHcCCCEEEe-------cCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcc
Q 022982 107 VEDCKQVGFDTIEL-------NVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTE 179 (289)
Q Consensus 107 l~~~k~lGF~~IEI-------SdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~ 179 (289)
.+++.++|-|.|.+ .+|.-+--.++-.++++.+.+.|++++-| .. +...+..
T Consensus 82 ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE-~~--------------------l~~~~~~ 140 (236)
T PF01791_consen 82 VEEAIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILE-PY--------------------LRGEEVA 140 (236)
T ss_dssp HHHHHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEE-EC--------------------ECHHHBS
T ss_pred HHHHHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEE-Ee--------------------cCchhhc
Q ss_pred ccccHHHHHHHHHHHHHccCcEE
Q 022982 180 YVEDVDLLIRRAERCLEAGADMI 202 (289)
Q Consensus 180 ~~~~~~~~I~~~~~dLeAGA~~V 202 (289)
.-.+++.+..-++-..++|||+|
T Consensus 141 ~~~~~~~I~~a~ria~e~GaD~v 163 (236)
T PF01791_consen 141 DEKKPDLIARAARIAAELGADFV 163 (236)
T ss_dssp STTHHHHHHHHHHHHHHTT-SEE
T ss_pred ccccHHHHHHHHHHHHHhCCCEE
No 500
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=56.94 E-value=70 Score=29.58 Aligned_cols=82 Identities=16% Similarity=0.023 Sum_probs=48.8
Q ss_pred HHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccccHHHHHH
Q 022982 110 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (289)
Q Consensus 110 ~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~I~ 189 (289)
.++.|++.+=|-|=--......-..+|+++.+. +.... ++| |-..+ .+
T Consensus 40 ~~~~g~~~lhivDLd~a~g~~~n~~~i~~i~~~-------~~~~v---~vg-------GGIrs---------------~e 87 (243)
T TIGR01919 40 WEQGGAEWIHLVDLDAAFGGGNNEMMLEEVVKL-------LVVVE---ELS-------GGRRD---------------DS 87 (243)
T ss_pred HHhCCCeEEEEEECCCCCCCcchHHHHHHHHHH-------CCCCE---EEc-------CCCCC---------------HH
Confidence 377888777665543322455556788888773 22110 111 01112 68
Q ss_pred HHHHHHHccCcEEEEeccccccCCCCccHHHHHHHHhccC
Q 022982 190 RAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (289)
Q Consensus 190 ~~~~dLeAGA~~ViiEarGI~d~~G~~r~d~v~~ii~~l~ 229 (289)
.+++.|++||++|++=+.-+- ..++++++++..|
T Consensus 88 ~~~~~l~~Ga~~vvigT~a~~------~p~~~~~~~~~~g 121 (243)
T TIGR01919 88 SLRAALTGGRARVNGGTAALE------NPWWAAAVIRYGG 121 (243)
T ss_pred HHHHHHHcCCCEEEECchhhC------CHHHHHHHHHHcc
Confidence 889999999999999554332 3556666666553
Done!