Query 022983
Match_columns 289
No_of_seqs 256 out of 3109
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 14:23:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022983.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022983hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ewk_A Sensor protein; PAS dom 100.0 3.2E-27 1.1E-31 187.4 18.6 154 31-288 2-155 (227)
2 2gj3_A Nitrogen fixation regul 99.9 1.7E-20 5.8E-25 133.2 15.6 117 17-137 4-120 (120)
3 2pr5_A Blue-light photorecepto 99.8 2.8E-19 9.7E-24 129.0 14.7 119 22-143 3-121 (132)
4 4hia_A LOV protein; PAS, HTH, 99.8 4.7E-19 1.6E-23 134.2 15.3 127 16-143 5-131 (176)
5 3mr0_A Sensory box histidine k 99.8 8.1E-19 2.8E-23 128.4 14.5 125 15-143 6-132 (142)
6 1n9l_A PHOT-LOV1, putative blu 99.8 1.9E-18 6.3E-23 120.5 15.4 109 26-135 1-109 (109)
7 3ue6_A Aureochrome1; PAS/LOV d 99.8 1E-18 3.6E-23 130.6 13.9 123 16-142 33-158 (166)
8 3f1p_B ARYL hydrocarbon recept 99.8 5.2E-19 1.8E-23 125.5 11.5 115 20-138 4-120 (121)
9 3p7n_A Sensor histidine kinase 99.8 3.6E-18 1.2E-22 137.7 15.1 120 15-138 60-182 (258)
10 3t50_A Blue-light-activated hi 99.8 3.7E-18 1.3E-22 122.0 12.9 117 23-143 2-121 (128)
11 3f1p_A Endothelial PAS domain- 99.8 2.4E-18 8.3E-23 121.2 9.2 108 27-138 8-116 (117)
12 4eet_B Phototropin-2; LOV, blu 99.8 4.2E-17 1.4E-21 113.7 14.6 111 23-137 2-115 (115)
13 3nja_A Probable ggdef family p 99.8 1.3E-17 4.6E-22 118.0 12.1 120 15-138 4-125 (125)
14 3mqq_A Transcriptional regulat 99.7 8.7E-18 3E-22 119.0 10.0 115 19-139 4-119 (120)
15 2z6d_A Phototropin-2; PAS-fold 99.7 1.6E-16 5.5E-21 112.5 15.6 124 15-142 3-129 (130)
16 1d06_A Nitrogen fixation regul 99.7 3.9E-17 1.3E-21 117.4 12.3 124 4-134 3-130 (130)
17 3lyx_A Sensory BOX/ggdef domai 99.7 1.9E-16 6.5E-21 111.2 15.6 119 16-138 5-123 (124)
18 3sw1_A Sensory box protein; li 99.7 1E-16 3.4E-21 119.3 14.5 124 16-143 23-149 (162)
19 2r78_A Sensor protein; sensory 99.7 1.9E-16 6.4E-21 111.7 14.7 110 15-134 8-117 (117)
20 2vv6_A FIXL, sensor protein FI 99.7 7E-17 2.4E-21 114.1 11.5 112 26-143 1-116 (119)
21 3h9w_A Diguanylate cyclase wit 99.7 4.3E-17 1.5E-21 114.4 10.0 111 27-141 2-114 (115)
22 2wkq_A NPH1-1, RAS-related C3 99.7 2.7E-16 9.4E-21 131.3 14.4 118 22-143 15-135 (332)
23 3k3c_A Protein RV1364C/MT1410; 99.7 1.7E-16 5.9E-21 117.7 11.6 123 15-143 14-142 (158)
24 3mxq_A Sensor protein; PSI2, M 99.7 8.7E-17 3E-21 118.4 9.5 120 15-139 19-150 (152)
25 3luq_A Sensor protein; PAS, hi 99.7 6.7E-16 2.3E-20 107.4 13.3 111 18-134 3-114 (114)
26 3ewk_A Sensor protein; PAS dom 99.7 1.4E-15 4.9E-20 120.1 15.1 111 18-132 111-227 (227)
27 3kx0_X Uncharacterized protein 99.7 9.4E-16 3.2E-20 117.2 11.9 123 15-143 34-162 (185)
28 3icy_A Sensor protein; sensory 99.7 4.9E-16 1.7E-20 109.0 9.0 115 16-134 2-118 (118)
29 2v0u_A NPH1-1, LOV2; kinase, t 99.6 2.3E-15 8E-20 108.8 12.2 116 20-139 4-122 (146)
30 3bwl_A Sensor protein; structu 99.6 8.9E-15 3.1E-19 104.0 14.6 120 5-134 5-126 (126)
31 2kdk_A ARYL hydrocarbon recept 99.6 3.1E-15 1.1E-19 105.6 12.1 112 22-137 7-120 (121)
32 3olo_A Two-component sensor hi 99.6 7.5E-15 2.6E-19 102.8 12.8 109 15-134 10-118 (118)
33 3mjq_A Uncharacterized protein 99.6 2.7E-15 9.3E-20 106.3 8.5 116 21-143 2-117 (126)
34 1v9y_A Heme PAS sensor protein 99.6 8.3E-15 2.8E-19 109.1 11.0 123 15-143 37-163 (167)
35 2l0w_A Potassium voltage-gated 99.6 6.1E-14 2.1E-18 100.3 14.9 115 18-136 19-138 (138)
36 3eeh_A Putative light and redo 99.6 9.7E-15 3.3E-19 102.7 10.1 116 15-134 8-125 (125)
37 1byw_A Protein (human ERG pota 99.6 1.2E-13 4E-18 94.5 15.3 107 29-136 2-110 (110)
38 3vol_A Aerotaxis transducer AE 99.6 5.7E-14 2E-18 111.2 13.7 114 16-143 20-145 (233)
39 4eho_A Bacteriophytochrome, PA 99.6 1.3E-15 4.4E-20 137.4 3.9 117 19-140 519-635 (635)
40 3mfx_A Sensory BOX/ggdef famil 99.5 5.2E-14 1.8E-18 100.8 10.5 112 18-136 7-125 (129)
41 3d72_A Vivid PAS protein VVD; 99.5 1.9E-13 6.4E-18 100.1 13.0 106 22-132 30-149 (149)
42 3fc7_A HTR-like protein, senso 99.5 5.2E-14 1.8E-18 99.6 6.7 108 16-134 17-125 (125)
43 4f3l_A Mclock, circadian locom 99.5 4.9E-13 1.7E-17 112.7 13.2 65 17-84 85-149 (361)
44 4f3l_A Mclock, circadian locom 99.4 1.8E-13 6.1E-18 115.4 8.2 108 29-140 252-360 (361)
45 4hi4_A Aerotaxis transducer AE 99.4 3.8E-12 1.3E-16 89.9 13.3 106 17-136 4-121 (121)
46 2vlg_A Sporulation kinase A; h 99.4 3.7E-13 1.3E-17 93.6 7.7 93 22-121 3-95 (111)
47 3fg8_A Uncharacterized protein 99.4 6.2E-13 2.1E-17 93.5 8.3 109 16-136 10-118 (118)
48 4f3l_B BMAL1B; BHLH, PAS, circ 99.4 7.6E-13 2.6E-17 112.4 9.4 107 29-138 279-386 (387)
49 2qkp_A Uncharacterized protein 99.4 2.9E-12 1E-16 94.1 11.2 118 18-142 19-139 (151)
50 3rty_A Period circadian protei 99.4 3.3E-12 1.1E-16 105.9 11.8 47 31-80 6-53 (339)
51 4f3l_B BMAL1B; BHLH, PAS, circ 99.4 9.5E-12 3.2E-16 105.7 13.5 62 18-82 86-148 (387)
52 3b33_A Sensor protein; structu 99.3 1.5E-11 5E-16 85.7 10.7 106 20-134 9-115 (115)
53 3a0r_A Sensor protein; four he 99.2 8.7E-12 3E-16 104.6 5.5 118 15-143 5-123 (349)
54 3cax_A Uncharacterized protein 99.2 8.6E-11 3E-15 99.1 10.8 117 16-142 237-353 (369)
55 1ll8_A PAS kinase; PAS domain, 99.2 2.6E-11 8.9E-16 84.4 5.3 103 26-134 6-113 (114)
56 3rty_A Period circadian protei 99.2 1.7E-10 5.7E-15 95.7 10.6 108 28-138 154-266 (339)
57 2w0n_A Sensor protein DCUS; si 99.1 2.7E-11 9.2E-16 84.3 4.0 104 15-134 12-118 (118)
58 3a0s_A Sensor protein; PAS-fol 99.1 1.5E-09 5.1E-14 71.8 12.3 95 27-132 1-96 (96)
59 1nwz_A PYP, photoactive yellow 99.1 2.7E-09 9.4E-14 74.4 12.6 99 21-126 20-120 (125)
60 1mzu_A PPR; photoactive yellow 99.1 4E-09 1.4E-13 73.7 12.5 98 22-126 26-125 (129)
61 2jhe_A Transcription regulator 99.0 2.8E-10 9.7E-15 86.8 6.6 107 15-137 77-189 (190)
62 4dj3_A Period circadian protei 99.0 3.9E-09 1.3E-13 86.6 12.1 105 29-136 175-282 (317)
63 4dj2_A Period circadian protei 99.0 2.5E-09 8.5E-14 87.9 10.2 55 24-81 32-87 (320)
64 2r78_A Sensor protein; sensory 98.9 8E-10 2.8E-14 77.2 5.1 42 243-287 13-54 (117)
65 3gdi_A Period circadian protei 98.9 8.5E-09 2.9E-13 84.3 11.2 105 30-137 167-273 (309)
66 3gdi_A Period circadian protei 98.9 3.7E-09 1.3E-13 86.4 8.8 58 23-82 20-77 (309)
67 2gj3_A Nitrogen fixation regul 98.9 1.2E-09 4.1E-14 76.6 4.9 43 243-288 7-49 (120)
68 4dj3_A Period circadian protei 98.9 1.6E-08 5.4E-13 83.0 12.1 57 23-82 31-88 (317)
69 1n9l_A PHOT-LOV1, putative blu 98.9 1.2E-09 4.1E-14 75.3 4.5 39 250-288 2-40 (109)
70 4dj2_A Period circadian protei 98.9 6.8E-09 2.3E-13 85.3 9.3 106 29-137 177-284 (320)
71 1d06_A Nitrogen fixation regul 98.8 3.2E-09 1.1E-13 75.5 4.9 43 243-288 18-60 (130)
72 3bwl_A Sensor protein; structu 98.8 6.2E-09 2.1E-13 73.3 4.6 41 243-286 19-59 (126)
73 3mfx_A Sensory BOX/ggdef famil 98.7 8.8E-09 3E-13 73.4 4.9 43 243-288 9-51 (129)
74 2pr5_A Blue-light photorecepto 98.7 8.8E-09 3E-13 73.4 4.5 44 245-288 3-46 (132)
75 3olo_A Two-component sensor hi 98.6 3.5E-08 1.2E-12 68.2 5.1 43 243-288 15-57 (118)
76 2ykf_A Pdtas, probable sensor 98.0 7.9E-09 2.7E-13 84.7 0.0 111 23-144 175-294 (305)
77 3mxq_A Sensor protein; PSI2, M 98.6 5.1E-08 1.7E-12 71.4 4.3 43 243-288 24-66 (152)
78 2vlg_A Sporulation kinase A; h 98.5 5.1E-08 1.8E-12 67.4 3.9 40 246-288 4-43 (111)
79 1ll8_A PAS kinase; PAS domain, 98.5 3.9E-08 1.3E-12 67.9 3.0 36 250-288 7-43 (114)
80 1nwz_A PYP, photoactive yellow 98.5 1.2E-07 3.9E-12 66.2 4.8 42 244-288 20-61 (125)
81 1mzu_A PPR; photoactive yellow 98.5 1.2E-07 4.2E-12 66.2 4.4 40 246-288 27-66 (129)
82 3mqq_A Transcriptional regulat 98.5 9.1E-08 3.1E-12 66.7 3.8 42 243-288 5-46 (120)
83 4eet_B Phototropin-2; LOV, blu 98.5 2E-07 6.8E-12 63.7 5.0 43 246-288 2-44 (115)
84 3f1p_B ARYL hydrocarbon recept 98.4 1E-07 3.4E-12 66.6 3.4 41 245-288 6-46 (121)
85 3fg8_A Uncharacterized protein 98.4 1.5E-07 5E-12 65.6 4.1 42 244-288 15-56 (118)
86 4hi4_A Aerotaxis transducer AE 98.4 1.5E-07 5.3E-12 65.8 3.9 43 243-288 7-61 (121)
87 3b33_A Sensor protein; structu 98.4 3.3E-07 1.1E-11 63.1 5.1 41 244-287 10-50 (115)
88 3fc7_A HTR-like protein, senso 98.4 1.9E-07 6.7E-12 65.1 4.0 43 243-288 21-63 (125)
89 3ue6_A Aureochrome1; PAS/LOV d 98.3 5.5E-07 1.9E-11 66.2 5.2 46 243-288 37-82 (166)
90 2kdk_A ARYL hydrocarbon recept 98.3 2.1E-07 7.3E-12 64.7 2.7 40 246-288 8-47 (121)
91 3luq_A Sensor protein; PAS, hi 98.3 3.8E-07 1.3E-11 62.3 3.6 43 243-288 5-47 (114)
92 3p7n_A Sensor histidine kinase 98.3 6.6E-07 2.3E-11 71.4 5.4 46 243-288 65-110 (258)
93 3f1p_A Endothelial PAS domain- 98.3 5.5E-07 1.9E-11 62.2 4.3 36 250-288 8-43 (117)
94 3t50_A Blue-light-activated hi 98.3 7.3E-07 2.5E-11 62.4 4.5 43 246-288 2-44 (128)
95 3a0s_A Sensor protein; PAS-fol 98.2 8.8E-07 3E-11 57.9 4.1 35 251-288 2-36 (96)
96 3vol_A Aerotaxis transducer AE 98.2 8.2E-07 2.8E-11 69.9 3.8 43 243-288 24-78 (233)
97 1byw_A Protein (human ERG pota 98.2 1.3E-06 4.5E-11 58.5 4.3 37 252-288 2-38 (110)
98 3d72_A Vivid PAS protein VVD; 98.2 9.3E-07 3.2E-11 63.8 3.7 41 247-288 32-72 (149)
99 3mjq_A Uncharacterized protein 98.2 1E-06 3.5E-11 61.2 3.3 40 245-287 3-42 (126)
100 3lyx_A Sensory BOX/ggdef domai 98.1 3.9E-06 1.3E-10 57.5 5.0 43 243-288 9-51 (124)
101 2z6d_A Phototropin-2; PAS-fold 98.0 5.4E-06 1.9E-10 57.2 4.8 45 243-287 8-52 (130)
102 2jhe_A Transcription regulator 98.0 6.2E-06 2.1E-10 62.4 5.1 43 243-288 82-124 (190)
103 2w0n_A Sensor protein DCUS; si 98.0 2.3E-06 7.9E-11 58.7 1.9 42 243-287 17-61 (118)
104 2l0w_A Potassium voltage-gated 98.0 8.7E-06 3E-10 57.0 4.9 46 243-288 21-66 (138)
105 3eeh_A Putative light and redo 97.9 1.1E-05 3.6E-10 55.5 4.7 42 243-287 13-55 (125)
106 3sw1_A Sensory box protein; li 97.9 8.2E-06 2.8E-10 59.5 3.7 43 243-288 27-72 (162)
107 3k3c_A Protein RV1364C/MT1410; 97.9 7.4E-06 2.5E-10 59.6 3.4 40 243-287 19-59 (158)
108 1v9y_A Heme PAS sensor protein 97.9 1.5E-05 5.2E-10 58.1 5.0 43 243-288 42-84 (167)
109 3kx0_X Uncharacterized protein 97.8 1E-05 3.6E-10 60.9 3.4 41 243-288 39-80 (185)
110 2ykf_A Pdtas, probable sensor 97.0 2.9E-06 1E-10 69.4 0.0 39 245-287 174-215 (305)
111 1oj5_A Steroid receptor coacti 97.8 3.8E-05 1.3E-09 53.4 5.2 100 31-134 10-113 (132)
112 2v0u_A NPH1-1, LOV2; kinase, t 97.8 3.5E-05 1.2E-09 54.3 5.2 44 245-288 6-49 (146)
113 2qkp_A Uncharacterized protein 97.7 1.8E-05 6E-10 57.7 2.4 42 243-288 21-65 (151)
114 3nja_A Probable ggdef family p 97.6 2.9E-05 1E-09 53.4 2.9 41 243-286 9-49 (125)
115 3icy_A Sensor protein; sensory 97.6 1.5E-05 5E-10 54.5 0.9 42 243-287 6-47 (118)
116 4eho_A Bacteriophytochrome, PA 97.4 6.1E-05 2.1E-09 68.0 2.4 41 244-287 521-561 (635)
117 3h9w_A Diguanylate cyclase wit 97.2 0.00016 5.3E-09 49.4 2.7 34 251-286 3-36 (115)
118 3mr0_A Sensory box histidine k 97.1 0.00039 1.3E-08 49.5 4.0 42 243-287 11-52 (142)
119 3cax_A Uncharacterized protein 96.9 0.00032 1.1E-08 58.9 2.5 42 242-288 240-281 (369)
120 2ool_A Sensor protein; bacteri 91.8 0.17 5.8E-06 41.6 4.4 40 31-72 45-84 (337)
121 4ew7_A Conjugative transfer: r 89.4 3.1 0.00011 27.1 10.9 92 18-117 20-112 (127)
122 2ool_A Sensor protein; bacteri 86.6 0.48 1.6E-05 38.9 3.4 25 263-287 52-76 (337)
123 4e04_A Bacteriophytochrome (li 74.1 13 0.00046 30.2 7.7 52 30-88 31-82 (327)
124 4ew7_A Conjugative transfer: r 74.1 5.1 0.00017 26.1 4.1 29 246-277 25-53 (127)
125 4dah_A Sporulation kinase D; a 72.4 27 0.00092 25.9 10.1 96 17-138 57-154 (217)
126 3c38_A Autoinducer 2 sensor ki 61.0 34 0.0012 26.7 7.1 89 24-137 77-165 (270)
127 2hje_A Autoinducer 2 sensor ki 60.3 53 0.0018 24.8 10.2 87 24-135 58-144 (221)
128 3s7o_A Bacteriophytochrome; bi 57.5 4.9 0.00017 32.9 2.0 41 30-72 54-94 (343)
129 3s7o_A Bacteriophytochrome; bi 46.0 18 0.00063 29.5 3.7 25 263-287 62-86 (343)
130 3nhq_A Bacteriophytochrome; ph 41.9 58 0.002 28.3 6.4 36 31-71 29-65 (505)
131 4e04_A Bacteriophytochrome (li 40.6 26 0.00088 28.5 3.8 31 254-287 32-62 (327)
132 3zq5_A Phytochrome-like protei 38.8 9.4 0.00032 33.3 1.0 41 30-72 31-71 (520)
133 1l1o_C Replication protein A 7 35.2 37 0.0012 24.8 3.6 32 252-286 81-114 (181)
134 3pxp_A Helix-turn-helix domain 29.3 65 0.0022 25.6 4.4 37 16-55 97-133 (292)
135 3zq5_A Phytochrome-like protei 29.1 42 0.0014 29.3 3.5 25 263-287 39-63 (520)
136 2h8b_A Insulin-like 3; insulin 21.9 54 0.0018 15.0 1.5 19 269-287 4-23 (26)
137 3mxn_A RECQ-mediated genome in 21.3 90 0.0031 22.2 3.3 33 252-285 62-94 (157)
138 3lif_A Putative diguanylate cy 20.7 2.7E+02 0.0091 20.7 10.9 97 16-138 56-156 (254)
139 2joi_A Hypothetical protein TA 20.2 42 0.0014 22.4 1.3 16 270-285 93-112 (118)
No 1
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.95 E-value=3.2e-27 Score=187.38 Aligned_cols=154 Identities=19% Similarity=0.355 Sum_probs=137.9
Q ss_pred EEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEE
Q 022983 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLF 110 (289)
Q Consensus 31 i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~ 110 (289)
|+++|.+ |+++++|++|++++||++++++|++...+.++.........++..+..+..+..++..++++|..+|+..
T Consensus 2 i~i~D~~---g~i~~~N~a~~~l~Gy~~~el~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~ 78 (227)
T 3ewk_A 2 VSITDLQ---GRILYANDNFCAVSRYGREELVGQDHRIVNSGYHGKAYIRDMWRTISRGNIWQGEFCNRRKDGTRYWVDS 78 (227)
T ss_dssp EEEEETT---CBEEEECHHHHHHTTCCHHHHTTSBGGGGCCSCSCHHHHHHHHHHHTTTCCEEEEEEEECSSSCEEEEEE
T ss_pred EEEECCC---CcEEehHHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCeEEEEEEEEcCCCCEEeeee
Confidence 6788999 9999999999999999999999999887777766777777788888888899999999999999999999
Q ss_pred EEEEeecCCCCcEEEEEEEEecccccHHHHhcccccccCCCcchhhhhHHhhcccccccccceeccchhcccCCCCCCcc
Q 022983 111 KMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEI 190 (289)
Q Consensus 111 ~~~~~~~~~~g~~~~~~~~~~DITe~k~~e~~l~~~~~~~n~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~ 190 (289)
+..|+.+ .+|.+.+++++.+|||++|++|+++..
T Consensus 79 ~~~p~~d-~~g~~~~~~~~~~DIT~~k~~e~~l~~--------------------------------------------- 112 (227)
T 3ewk_A 79 TIVPLMD-NAGKPRQYISIRRDITAQKEAEAQLAR--------------------------------------------- 112 (227)
T ss_dssp EEEEEEC-SSSCEEEEEEEEEECTTTTHHHHHHHH---------------------------------------------
T ss_pred EEEEEEc-CCCCEEEEEEEEEehhhHHHHHHHHHH---------------------------------------------
Confidence 9999998 899999999999999999999554310
Q ss_pred ccCccccHHHHHHHHHHhhHHHHhhhcccccccceecccccCCCCCCCcchhHHHHhhcccccEEEeCCCCCCCCEEEec
Q 022983 191 EDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYAS 270 (289)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~i~d~~~~~~~i~~vN 270 (289)
+...++.++++|+++|. +|+|+++|
T Consensus 113 ----------------------------------------------------~~~~~~~~~~~i~~~d~---~g~i~~~N 137 (227)
T 3ewk_A 113 ----------------------------------------------------LKQAMDANSEMILLTDR---AGRIIYAN 137 (227)
T ss_dssp ----------------------------------------------------HHHHHHTCCSEEEEECT---TSCEEEEC
T ss_pred ----------------------------------------------------HHHHHhcCcCeEEEEcC---CCcEEEEc
Confidence 34467788899999999 99999999
Q ss_pred HHHHHhhCCChHhHhhcc
Q 022983 271 DAFLKLTGAQIFTKITRI 288 (289)
Q Consensus 271 ~~f~~~tGys~~E~~G~~ 288 (289)
++|++++||+.+|++|+.
T Consensus 138 ~~~~~~~G~~~~e~~g~~ 155 (227)
T 3ewk_A 138 PALCRFSGMAEGELLGQS 155 (227)
T ss_dssp HHHHHHHTCCTHHHHSSC
T ss_pred hHHHHHhCCCHHHHcCCC
Confidence 999999999999999974
No 2
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=99.86 E-value=1.7e-20 Score=133.17 Aligned_cols=117 Identities=20% Similarity=0.377 Sum_probs=105.7
Q ss_pred HHHHHHHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCCeEEEE
Q 022983 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNL 96 (289)
Q Consensus 17 ~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~ 96 (289)
+++++.++++++++++++|.+ |+|+++|++|++++||++++++|++...+.++.........++..+..+..+..++
T Consensus 4 ~~~~~~~~~~~~~~i~~~d~~---g~i~~~N~a~~~~~G~~~~elig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~ 80 (120)
T 2gj3_A 4 PEIFRQTVEHAPIAISITDLK---ANILYANRAFRTITGYGSEEVLGKNESILSNGTTPRLVYQALWGRLAQKKPWSGVL 80 (120)
T ss_dssp HHHHHHHHHHCSSEEEEECTT---CBEEEECHHHHHHHCCCTTGGGGCBGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHhCCCeEEEECCC---CCEEeehHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCCEEEEE
Confidence 457889999999999999999 99999999999999999999999998877776666666667778888888899999
Q ss_pred EEEecCCCEEEEEEEEEEeecCCCCcEEEEEEEEecccccH
Q 022983 97 LNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137 (289)
Q Consensus 97 ~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k 137 (289)
..++++|..+|+.+++.|+.+ .+|.+.+++++.+|||++|
T Consensus 81 ~~~~~dG~~~~~~~~~~pi~~-~~g~~~~~v~~~~DITe~k 120 (120)
T 2gj3_A 81 VNRRKDKTLYLAELTVAPVLN-EAGETIYYLGMHRDTSELH 120 (120)
T ss_dssp EEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEECCSCC
T ss_pred EEEcCCCCEEEEEEEEEEEEC-CCCCEEEEEEEeccCcccC
Confidence 999999999999999999998 8999999999999999986
No 3
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=99.82 E-value=2.8e-19 Score=129.03 Aligned_cols=119 Identities=36% Similarity=0.654 Sum_probs=100.6
Q ss_pred HHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCCeEEEEEEEec
Q 022983 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKK 101 (289)
Q Consensus 22 ~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 101 (289)
.++++++++++++|.+.++|+|+++|++|++++||++++++|+++..+.++.........+...+..+..+..+...+++
T Consensus 3 ~~~~~~~~~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k 82 (132)
T 2pr5_A 3 HMLDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKK 82 (132)
T ss_dssp ---CCCCCEEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECT
T ss_pred hHHhcCCCcEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCChhhhCCCCCCHHHHHHHHHHHHcCCCeEEEEEEEec
Confidence 57899999999999871113999999999999999999999999877777766666666777778888888889999999
Q ss_pred CCCEEEEEEEEEEeecCCCCcEEEEEEEEecccccHHHHhcc
Q 022983 102 DGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (289)
Q Consensus 102 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~~e~~l 143 (289)
+|..+|+.+++.|+.+ .+ +.+++++.+|||++|++|+++
T Consensus 83 dG~~~~~~~~~~~~~~-~~--~~~~~~~~~DITe~k~~e~~l 121 (132)
T 2pr5_A 83 DGTMFWNELNIDPMEI-ED--KTYFVGIQNDITKQKEYEKLL 121 (132)
T ss_dssp TSCEEEEEEEEEEEEE-TT--EEEEEEEEEECHHHHHHHHHH
T ss_pred CCCeeeeEEEEEeccC-CC--eeEEEEEEEeCcHHHHHHHHH
Confidence 9999999999999987 43 778999999999999998776
No 4
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=99.82 E-value=4.7e-19 Score=134.20 Aligned_cols=127 Identities=25% Similarity=0.407 Sum_probs=114.9
Q ss_pred HHHHHHHHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCCeEEE
Q 022983 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (289)
Q Consensus 16 ~~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 95 (289)
..++++.++++++++++++|.+.++|+|+++|+++++++||++++++|+++..+.++.........+...+..+..+..+
T Consensus 5 ~~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 84 (176)
T 4hia_A 5 QFEKIRAVFDRSGVALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRDALKLGRELQVV 84 (176)
T ss_dssp HHHHHHHHHHHCSSCCEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHhcCCCcEEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcceeeCCCCCHHHHHHHHHHHHcCCceEEE
Confidence 44578899999999999999765569999999999999999999999999888888888888888888888888889889
Q ss_pred EEEEecCCCEEEEEEEEEEeecCCCCcEEEEEEEEecccccHHHHhcc
Q 022983 96 LLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (289)
Q Consensus 96 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~~e~~l 143 (289)
+...+++|..+|+.+++.|+.+ .+|.+.+++++++|||++|++|+++
T Consensus 85 ~~~~~~dG~~~~~~~~~~pi~~-~~g~~~~~~~~~~DITe~k~~e~~~ 131 (176)
T 4hia_A 85 LRNYRANDEPFDNLLFLHPVGG-RPDAPDYFLGSQFELGRSGNSEEAA 131 (176)
T ss_dssp EEEECTTCCEEEEEEEEEEESS-BTTBCSEEEEEEEEESSSGGGHHHH
T ss_pred EEEEcCCCCEEEEEEEEEEeeC-CCCCeEEEEEEEEECcHhhHHHHHH
Confidence 9899999999999999999998 7899999999999999999998774
No 5
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=99.81 E-value=8.1e-19 Score=128.35 Aligned_cols=125 Identities=14% Similarity=0.205 Sum_probs=109.1
Q ss_pred HHHHHHHHHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCC--CCCCccCCCCCHHHHHHHHHHHHhCCCe
Q 022983 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGR--NGRMFQGPRTNRRTIMEIREAIREERPI 92 (289)
Q Consensus 15 ~~~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (289)
.++++|+.+++.+++++|.+|.. +.++++|+++.+++||+++++.+. .+..+++|++.......+...+..+..+
T Consensus 6 ~se~rl~~~~~~~~~g~w~~d~~---~~~~~~s~~~~~~~G~~~~~~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~~ 82 (142)
T 3mr0_A 6 ASEERFQLAVSGASAGLWDWNPK---TGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTY 82 (142)
T ss_dssp ---CCHHHHHHHTTCEEEEECTT---TCCEEECHHHHHHTTCCGGGSCSEEC---CCBCTTTHHHHHHHHHHHHHHCCCE
T ss_pred HHHHHHHHHHHhCCcEEEEEEcC---CCeEEECHHHHHHhCCCccccCCCHHHHHhhcCHHHHHHHHHHHHHHHhCCCce
Confidence 56677889999999999999999 999999999999999999988763 3556778888888878888888888889
Q ss_pred EEEEEEEecCCCEEEEEEEEEEeecCCCCcEEEEEEEEecccccHHHHhcc
Q 022983 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (289)
Q Consensus 93 ~~e~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~~e~~l 143 (289)
..++++.+++|..+|+...+.|+.+ .+|.+.+++|+++|||++|++|++|
T Consensus 83 ~~e~r~~~~~G~~~w~~~~~~~~~d-~~g~~~~~~G~~~DITerk~~E~~L 132 (142)
T 3mr0_A 83 DVEYRVRTRSGDFRWIQSRGQALWN-SAGEPYRMVGWIMDVTDRKRDEDAL 132 (142)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHHHHHHH
T ss_pred EEEEEEECCCCCEEEEEEEEEEEEC-CCCCEEEEEEEEEcCchHHHHHHHH
Confidence 9999999999999999999999998 8999999999999999999998776
No 6
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=99.81 E-value=1.9e-18 Score=120.52 Aligned_cols=109 Identities=40% Similarity=0.795 Sum_probs=97.1
Q ss_pred hCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCCeEEEEEEEecCCCE
Q 022983 26 ELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTP 105 (289)
Q Consensus 26 ~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~ 105 (289)
+++++++++|...++|+|+++|++|++++||++++++|++...+.++.........++..+..+..+..++..++++|+.
T Consensus 1 ~~~~~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~ 80 (109)
T 1n9l_A 1 GLRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTP 80 (109)
T ss_dssp CCSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCE
T ss_pred CCccEEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCchhcCCCCCCHHHHHHHHHHHHcCCcEEEEEEEEcCCCCE
Confidence 36789999995323399999999999999999999999998877777776677778888888999999999999999999
Q ss_pred EEEEEEEEEeecCCCCcEEEEEEEEecccc
Q 022983 106 FWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135 (289)
Q Consensus 106 ~~~~~~~~~~~~~~~g~~~~~~~~~~DITe 135 (289)
+|+.+++.|+.+ ++|.+.+++++.+|||+
T Consensus 81 ~~~~~~~~pi~d-~~G~~~~~v~~~~DITe 109 (109)
T 1n9l_A 81 FWNLLTVTPIKT-PDGRVSKFVGVQVDVTS 109 (109)
T ss_dssp EEEEEEEEEEEC-TTSCEEEEEEEEEECCC
T ss_pred EEEEEEEEEEEC-CCCCEEEEEEEEEeCCC
Confidence 999999999998 89999999999999996
No 7
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=99.80 E-value=1e-18 Score=130.64 Aligned_cols=123 Identities=38% Similarity=0.624 Sum_probs=111.4
Q ss_pred HHHHHHHHHhhCCCEEEEEeC---CCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCCe
Q 022983 16 YTLWVHEALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92 (289)
Q Consensus 16 ~~~~l~~~~~~~~~~i~~~d~---~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (289)
...++..++++++++++++|. + |+++++|+++++++||++++++|+++..+.++.........+...+..+..+
T Consensus 33 ~~~~~~~~~~~~~~~i~~~d~~~~~---g~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 109 (166)
T 3ue6_A 33 PDYSLVKALQMAQQNFVITDASLPD---NPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRAVDKIRNAITKGVDT 109 (166)
T ss_dssp CCCHHHHHHHHTTSCEEEEETTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHhcCCceEEEEEccCCC---CcEEEECHHHHHHhCcCHHHHcCCCHhheeCCCCCHHHHHHHHHHHhcCCce
Confidence 445788999999999999999 7 9999999999999999999999999888888777777777888888888889
Q ss_pred EEEEEEEecCCCEEEEEEEEEEeecCCCCcEEEEEEEEecccccHHHHhc
Q 022983 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142 (289)
Q Consensus 93 ~~e~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~~e~~ 142 (289)
..+....+++|..+|+.+.+.|+.+ .+|.+.+++++++|||++|+++..
T Consensus 110 ~~e~~~~~~~g~~~~~~~~~~~i~~-~~g~~~~~~~~~~DITe~k~~~~~ 158 (166)
T 3ue6_A 110 SVCLLNYRQDGTTFWNLFFVAGLRD-SKGNIVNYVGVQSKVSEDYAKLLV 158 (166)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEECCBCCHHHHHHHH
T ss_pred EEEEEEEcCCCCEEEEEEEEEeeeC-CCCCEEEEEEEEEechHHHHHHHH
Confidence 8899999999999999999999998 799999999999999999988443
No 8
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=99.80 E-value=5.2e-19 Score=125.54 Aligned_cols=115 Identities=10% Similarity=0.128 Sum_probs=98.2
Q ss_pred HHHHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHH-hCCCeEEEEEE
Q 022983 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIR-EERPIEVNLLN 98 (289)
Q Consensus 20 l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~ 98 (289)
...+++++++.+++.|.+ |+++++|+++++++||++++++|+++..+++|++.+.....+...+. .+..+..++++
T Consensus 4 ~~ll~e~~~d~i~~~d~~---g~i~~~n~~~~~~~G~~~~el~g~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~~e~r~ 80 (121)
T 3f1p_B 4 KGLNVCQPTRFISRHNIE---GIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRF 80 (121)
T ss_dssp ----CCCCCEEEEEECTT---SBEEEECTTHHHHHSCCGGGTTTSBGGGGBCTTTHHHHHHHHHHHTTSTTCCEEEEEEE
T ss_pred ccceecCCCceEEEECCC---ceEEEECcchhhhhCCChHHHcCCCHHHeECHHHHHHHHHHHHHHHhcCCCcccEEEEE
Confidence 445789999999999999 99999999999999999999999998888888887777767766664 44568889999
Q ss_pred EecCCCEEEEEEEEEEeecCC-CCcEEEEEEEEecccccHH
Q 022983 99 YKKDGTPFWMLFKMSLVFGKE-DGRATHFVAVQVPIVSRKH 138 (289)
Q Consensus 99 ~~~~g~~~~~~~~~~~~~~~~-~g~~~~~~~~~~DITe~k~ 138 (289)
++++|..+|+..+..|+.+ . +|.+.+++++.+|||++|+
T Consensus 81 ~~~dG~~~w~~~~~~~~~~-~~~g~~~~iv~~~~DIT~~kq 120 (121)
T 3f1p_B 81 RSKNQEWLWMRTSSFTFQN-PYSDEIEYIICTNTNVKNSSQ 120 (121)
T ss_dssp ECTTSCEEEEEEEEEEECC-TTCCCCCEEEEEEEECCCC--
T ss_pred EecCCCEEEEEEEEEEEEC-CCCCceeEEEEEeEEcccccC
Confidence 9999999999999999987 5 7888899999999999986
No 9
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=99.78 E-value=3.6e-18 Score=137.69 Aligned_cols=120 Identities=30% Similarity=0.597 Sum_probs=106.5
Q ss_pred HHHHHHHHHHhhCCCEEEEEeC---CCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCC
Q 022983 15 RYTLWVHEALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP 91 (289)
Q Consensus 15 ~~~~~l~~~~~~~~~~i~~~d~---~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (289)
..+++++.+++++|++++++|. + |+|+++|++|++++||++++++|+++..+.++.........+...+..+..
T Consensus 60 ~~~~~~~~i~~~~~~~i~~~d~~~~~---g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 136 (258)
T 3p7n_A 60 PPAQWVLDLIEASPIASVVSDPRLAD---NPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWLTDKIRQGVREHKP 136 (258)
T ss_dssp -CCHHHHHHHHTCSSEEEEECTTSTT---CCEEEECHHHHHHHCCCGGGTTTSCGGGGCCTTCCHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHhcCCccEEEEcCCCCC---CcEEEEhHHHHHHcCCCHHHHCCCChhhccCCCCchhHHHHHHHHHHcCCC
Confidence 4456899999999999999999 7 899999999999999999999999998888888888888888888889999
Q ss_pred eEEEEEEEecCCCEEEEEEEEEEeecCCCCcEEEEEEEEecccccHH
Q 022983 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (289)
Q Consensus 92 ~~~e~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~ 138 (289)
+..+....+++|..+|+.+.+.|+.+ .+|.+.+++++++|||++|.
T Consensus 137 ~~~e~~~~~~dG~~~~~~~~~~pi~d-~~g~~~~~v~~~~DITerk~ 182 (258)
T 3p7n_A 137 VLVEILNYKKDGTPFRNAVLVAPIYD-DDDELLYFLGSQVEVDDDQP 182 (258)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEEC-TTSCSEEEEEEEEEC-----
T ss_pred eEEEEEEEcCCCCEEEEeeEEEEEEc-CCCCEEEEEEEeeecchhhh
Confidence 99999999999999999999999998 89999999999999999943
No 10
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=99.78 E-value=3.7e-18 Score=121.96 Aligned_cols=117 Identities=38% Similarity=0.664 Sum_probs=103.2
Q ss_pred HHhhCCCEEEEEeC---CCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCCeEEEEEEE
Q 022983 23 ALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNY 99 (289)
Q Consensus 23 ~~~~~~~~i~~~d~---~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 99 (289)
++++++++++++|. + |+++++|+++++++||++++++|+++..+.++.........+...+..+..+..+....
T Consensus 2 ~~~~~~~~i~~~d~~~~~---g~i~~~N~~~~~l~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 78 (128)
T 3t50_A 2 ASEFTLMPMLITNPHLPD---NPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPIDIDIINY 78 (128)
T ss_dssp CCCCCSSCEEEECTTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred ccccCcccEEEecCCCCC---CcEEEEcHHHHHHhCcCHHHHcCCCHhhhcCCccCHHHHHHHHHHHHcCCCceeEEEEE
Confidence 47889999999999 7 99999999999999999999999998888877777777778888888888888899999
Q ss_pred ecCCCEEEEEEEEEEeecCCCCcEEEEEEEEecccccHHHHhcc
Q 022983 100 KKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (289)
Q Consensus 100 ~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~~e~~l 143 (289)
+++|..+|+.+++.|+.+ .+|.+.+++++++|||++|++|++.
T Consensus 79 ~~~g~~~~~~~~~~~i~~-~~g~~~~~~~~~~DITe~k~~e~~~ 121 (128)
T 3t50_A 79 KKSGEAFWNRLHISPVHN-ANGRLQHFVSSQLDVTLELVPRGSL 121 (128)
T ss_dssp CTTCCEEEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHC-----
T ss_pred cCCCCEEEEEEEEEEEEC-CCCCEEEEEEEEEEcchhhhhhhhh
Confidence 999999999999999998 7899999999999999999997765
No 11
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=99.76 E-value=2.4e-18 Score=121.22 Aligned_cols=108 Identities=8% Similarity=0.170 Sum_probs=97.2
Q ss_pred CCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCCeEEEEEEEecCCCEE
Q 022983 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPF 106 (289)
Q Consensus 27 ~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~ 106 (289)
+++.+++.|.+ |+++++|+++++++||++++++|+++..+++|++.+.....+...+..+..+..++++++++|..+
T Consensus 8 ~~~~i~~~d~~---g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~ 84 (117)
T 3f1p_A 8 SKTFLSEHSMD---MKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYV 84 (117)
T ss_dssp GGEEEEEECTT---CBEEEECTHHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHSEEECCCEEEECTTSSEE
T ss_pred CccEEEEECCC---ceEEEECcChhhhhCCCHHHHcCCchhheECHHHHHHHHHHHHHHHhCCCeeeeEEEEEecCCCEE
Confidence 45788889999 999999999999999999999999988888888877777777788777777778899999999999
Q ss_pred EEEEEEEEeecCC-CCcEEEEEEEEecccccHH
Q 022983 107 WMLFKMSLVFGKE-DGRATHFVAVQVPIVSRKH 138 (289)
Q Consensus 107 ~~~~~~~~~~~~~-~g~~~~~~~~~~DITe~k~ 138 (289)
|+.....|+.+ . +|.+.+++++.+|||++|+
T Consensus 85 w~~~~~~~~~d-~~~g~~~~iv~~~~DITer~~ 116 (117)
T 3f1p_A 85 WLETQGTVIYN-PRNLQPQCIMCVNYVLSEIEK 116 (117)
T ss_dssp EEEEEEEEEEE-TTTTEEEEEEEEEEECSCCBC
T ss_pred EEEEeeEEEEC-CCCCCceEEEEEeeecccccc
Confidence 99999999998 6 7888999999999999986
No 12
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=99.75 E-value=4.2e-17 Score=113.71 Aligned_cols=111 Identities=41% Similarity=0.778 Sum_probs=99.3
Q ss_pred HHhhCCCEEEEEeC---CCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCCeEEEEEEE
Q 022983 23 ALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNY 99 (289)
Q Consensus 23 ~~~~~~~~i~~~d~---~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 99 (289)
.+++++++++++|. + |+++++|+++++++||++++++|+++..+.++.........+...+..+..+..+.+..
T Consensus 2 ~l~~~~~~i~~~d~~~~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (115)
T 4eet_B 2 SPEFIEKNFVITDPRLPD---NPIIFASDGFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAIRDQRETTVQLINY 78 (115)
T ss_dssp ---CCCCSEEEECTTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred ccccCCCcEEEEcCCCCC---CcEEEEcHHHHHHHCcCHHHHhCCCHHHhcCCCCChHHHHHHHHHHHcCCCcceEEEEe
Confidence 57899999999999 8 99999999999999999999999998888877777777777888888888888898889
Q ss_pred ecCCCEEEEEEEEEEeecCCCCcEEEEEEEEecccccH
Q 022983 100 KKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137 (289)
Q Consensus 100 ~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k 137 (289)
+++|..+|+.++..|+.+ .+|.+.+++++.+|||+++
T Consensus 79 ~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~DITer~ 115 (115)
T 4eet_B 79 TKSGKKFWNLLHLQPVRD-QKGELQYFIGVQLDGSDHV 115 (115)
T ss_dssp CTTCCEEEEEEEEEEEEC-TTSCEEEEEEEEEECSCCC
T ss_pred cCCCCEEEEEEEEEEEEC-CCCCEEEEEEEEEeecccC
Confidence 999999999999999998 7899999999999999874
No 13
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=99.75 E-value=1.3e-17 Score=118.04 Aligned_cols=120 Identities=14% Similarity=0.090 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCC--CCCCCccCCCCCHHHHHHHHHHHHhCCCe
Q 022983 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIG--RNGRMFQGPRTNRRTIMEIREAIREERPI 92 (289)
Q Consensus 15 ~~~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (289)
+++++++.++++++++++.+|.+ +.++++|+++++++||++++++| ..+..+.+|++.......+...+..+..+
T Consensus 4 ~~~~~l~~~~~~~~~~i~~~d~~---~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 80 (125)
T 3nja_A 4 MAEKLLHTAESDAGIGSWVLHME---SGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDRPF 80 (125)
T ss_dssp -------------CCEEEEEETT---TTEEEECHHHHHHHTCCTTTCCCBHHHHHHHBCTTTHHHHHHHHHHHHHSCCCE
T ss_pred HHHHHHHHHHHhCCeeEEEEEcC---CCcEEECHHHHHHhCCCcccccccHHHHHhhcChhHHHHHHHHHHHHHhcCCCc
Confidence 45667889999999999999999 99999999999999999999988 33445567777677777777777888888
Q ss_pred EEEEEEEecCCCEEEEEEEEEEeecCCCCcEEEEEEEEecccccHH
Q 022983 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (289)
Q Consensus 93 ~~e~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~ 138 (289)
..++++.+++|..+|+.+...|+.+ .+|.+.+++++++|||++|+
T Consensus 81 ~~e~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~g~~~DITe~k~ 125 (125)
T 3nja_A 81 DVEYRIVRPDGQVRELLERNHIQRQ-ASGQVDHLWGTVIDMTEHKQ 125 (125)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEECCC---
T ss_pred eEEEEEECCCCCEEEEEEeeEEEEC-CCCCEEEEEEEEEecccccC
Confidence 8899999999999999999999998 79999999999999999985
No 14
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=99.74 E-value=8.7e-18 Score=118.96 Aligned_cols=115 Identities=12% Similarity=0.093 Sum_probs=90.9
Q ss_pred HHHHHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCC-HHHHHHHHHHHHhCCCeEEEEE
Q 022983 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTN-RRTIMEIREAIREERPIEVNLL 97 (289)
Q Consensus 19 ~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~e~~ 97 (289)
.|+.+++++|++++ ++.+ |+|+++|+++++++||++++++|+++..+.++... ......+...+..+..+..+.+
T Consensus 4 ~~~~~~~~~~~~i~-~~~~---g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 79 (120)
T 3mqq_A 4 DYKTAFHLAPIGLV-LSRD---RVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRI 79 (120)
T ss_dssp CHHHHHHHCSSEEE-EEET---TEEEEECHHHHHHTTSCHHHHTTCBGGGGSSSHHHHHHHHHHHHHHHHHHSCEEEEEE
T ss_pred hHHHHHhcCCceEE-EecC---CEEHHHHHHHHHHhCcCHHHhCCCchhhccCChhhHHHHHHHHHHHHhcCCcceEEEE
Confidence 36789999999996 4778 99999999999999999999999998776654322 2334445556667778888999
Q ss_pred EEecCCCEEEEEEEEEEeecCCCCcEEEEEEEEecccccHHH
Q 022983 98 NYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (289)
Q Consensus 98 ~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~~ 139 (289)
+.+++|..+|+.++..|+. ..+...+++++++|||++|++
T Consensus 80 ~~~~dG~~~~~~~~~~~~~--~~~~~~~~v~~~~DITerk~~ 119 (120)
T 3mqq_A 80 MKRAGGELFWCHVTGRALD--RTAPLAAGVWTFEDLSATRRV 119 (120)
T ss_dssp EECTTSCEEEEEEEEEESS--TTSTTSSEEEEEEESCC----
T ss_pred EEeCCCCEEEEEEEEEECC--CCCCceeEEEEEEcccHhhcc
Confidence 9999999999999999994 356566789999999999986
No 15
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=99.74 E-value=1.6e-16 Score=112.46 Aligned_cols=124 Identities=38% Similarity=0.732 Sum_probs=104.4
Q ss_pred HHHHHHHHHHhhCCCEEEEEe---CCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCC
Q 022983 15 RYTLWVHEALDELPDSFTITD---PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP 91 (289)
Q Consensus 15 ~~~~~l~~~~~~~~~~i~~~d---~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (289)
+.++.++.++++++++++++| .+ |.++++|+++++++|++.++++|+++..+.++.........+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~i~~~d~~d~~---~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (130)
T 2z6d_A 3 RVSQELKTALSTLQQTFVVSDATQPH---CPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTDKNEVAKIRDCVKNGKS 79 (130)
T ss_dssp ----CHHHHHHHTTCEEEEEETTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHhcccceeeeeccCCC---CcEEEecHHHHHHhCcCHHHHcCCChhhccCCCCCchHHHHHHHHHHcCCc
Confidence 345568889999999999999 88 999999999999999999999999988887777777777777777888888
Q ss_pred eEEEEEEEecCCCEEEEEEEEEEeecCCCCcEEEEEEEEecccccHHHHhc
Q 022983 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142 (289)
Q Consensus 92 ~~~e~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~~e~~ 142 (289)
+..+....+++|..+|+.+...|+.+ ..|.+.+++++.+|||++|++|++
T Consensus 80 ~~~~~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~Dit~~~~~e~e 129 (130)
T 2z6d_A 80 YCGRLLNYKKDGTPFWNLLTVTPIKD-DQGNTIKFIGMQVEVSKYTEGVND 129 (130)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEECCTTC-----
T ss_pred ceeEEEEEcCCCcEEEEEEEEEEEEC-CCCCeeEEEEEEecchHHHHhhcc
Confidence 88888888999999999999999998 789999999999999999988653
No 16
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=99.73 E-value=3.9e-17 Score=117.36 Aligned_cols=124 Identities=17% Similarity=0.239 Sum_probs=96.2
Q ss_pred ccchHHHhhchHHHHHHHHHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHH
Q 022983 4 QLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83 (289)
Q Consensus 4 ~l~~~~~~l~~~~~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~ 83 (289)
++...++.+. +.+.+++.++++++++++++|.+ |+|+++|+++++++||++++++|+++..+.++.........+.
T Consensus 3 ~~~~~e~~l~-~~~~~~~~l~~~~~d~i~~~d~~---g~i~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~~~~~~~~ 78 (130)
T 1d06_A 3 HMLETEDVVR-ARDAHLRSILDTVPDATVVSATD---GTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGYLQ 78 (130)
T ss_dssp HHHHHHHHHH-HHTSCHHHHHTTCSSEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHH
T ss_pred hHHHHHHHHH-HHHHHHHHHHhhCcCeEEEECCC---CeEEEEcHHHHHHHCCCHHHHcCCcHHHHCCchhHHHHHHHHH
Confidence 4556677776 66778999999999999999999 9999999999999999999999999887776554333333333
Q ss_pred HHHHhCCC----eEEEEEEEecCCCEEEEEEEEEEeecCCCCcEEEEEEEEeccc
Q 022983 84 EAIREERP----IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (289)
Q Consensus 84 ~~~~~~~~----~~~e~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 134 (289)
.....+.. ...++..+++||..+|+.+++.|+.+ + +. ..++++++|||
T Consensus 79 ~~~~~~~~~~~~~~~e~~~~~kdG~~~~~~~~~~~~~~-~-~~-~~~~~~~~DIT 130 (130)
T 1d06_A 79 RYMATGEKRIIGIDRVVSGQRKDGSTFPMKLAVGEMRS-G-GE-RFFTGFIRDLT 130 (130)
T ss_dssp HHHHHCCCSSTTSCEEEEEECTTSCEEEEEEEEEEEEE-T-TE-EEEEEEEEECC
T ss_pred HHHhcCCccccCCeeEEEEEeCCCCEEEEEEEEEEEEE-C-Ce-EEEEEEEEECc
Confidence 43333332 23466778999999999999999976 3 33 45889999997
No 17
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=99.73 E-value=1.9e-16 Score=111.21 Aligned_cols=119 Identities=20% Similarity=0.264 Sum_probs=103.9
Q ss_pred HHHHHHHHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCCeEEE
Q 022983 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (289)
Q Consensus 16 ~~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 95 (289)
..++++.++++++++++++|.+ |.++++|+++++++|++.++++|++...+.++.........+...+..+..+..+
T Consensus 5 ~~~~~~~~~~~~~~~i~~~d~~---~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (124)
T 3lyx_A 5 ILKQRAKAFDYVFDAIVVTDLQ---GFIIDWNKGSETLYGYSKEQAIGQPVNMLHVPGDTEHITSEVISAVENQGKWTGE 81 (124)
T ss_dssp HHHHHHHGGGTCSSEEEEEETT---CBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTHHHHHHHHHHHHHHTSCEEEE
T ss_pred HHHHHHHHHhhcCceEEEECCC---CcEeehhhHHHHHhCCCHHHHcCCCHHHhcCcchhhHHHHHHHHHHHcCCcccce
Confidence 4567889999999999999999 9999999999999999999999998776665555555566677778888888888
Q ss_pred EEEEecCCCEEEEEEEEEEeecCCCCcEEEEEEEEecccccHH
Q 022983 96 LLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (289)
Q Consensus 96 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~ 138 (289)
.....++|..+|+.+...|+.+ ..|.+.+++++.+|||++|+
T Consensus 82 ~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~Dit~~~~ 123 (124)
T 3lyx_A 82 IRMLHKDGHIGWIESMCVPIYG-ENYQMVGALGINRDITKRKK 123 (124)
T ss_dssp EEEECTTSCEEEEEEEEEEEEC-STTCEEEEEEEEEECSCC--
T ss_pred EEEEccCCCEEEEEEEEEEEEC-CCCCEEEEEEEEecchhhhc
Confidence 8889999999999999999998 79999999999999999986
No 18
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=99.73 E-value=1e-16 Score=119.34 Aligned_cols=124 Identities=23% Similarity=0.437 Sum_probs=112.4
Q ss_pred HHHHHHHHHhhCCCEEEEEeCCCCCc---cEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCCe
Q 022983 16 YTLWVHEALDELPDSFTITDPSISGH---PIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92 (289)
Q Consensus 16 ~~~~l~~~~~~~~~~i~~~d~~~~~g---~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (289)
.+++++.++++++++++++|.+ | +++++|+++++++|++.++++|+++..+.++.........+...+..+..+
T Consensus 23 ~~~~~~~i~~~~~~~i~~~d~~---~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (162)
T 3sw1_A 23 NAQLLQSMVDASNDGIVVAEKE---GDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQGDDRDQLGRARIRKAMAEGRPC 99 (162)
T ss_dssp CHHHHHHHHHTCSSEEEEEEEE---TTEEEEEEECHHHHHHHTCCHHHHTTSBGGGGTTTCCCCHHHHHHHHHHHHTCCE
T ss_pred hHHHHHHHHhhccCcEEEEeCC---CCccEEEEECHHHHHHHCCCHHHHcCCCcceecCCCcCHHHHHHHHHHHhcCCCC
Confidence 4567899999999999999999 9 999999999999999999999999888877777777777778888888888
Q ss_pred EEEEEEEecCCCEEEEEEEEEEeecCCCCcEEEEEEEEecccccHHHHhcc
Q 022983 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (289)
Q Consensus 93 ~~e~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~~e~~l 143 (289)
..+....+++|..+|+.+.+.|+.+ .+|.+.+++++++|||++|++|+++
T Consensus 100 ~~~~~~~~~~g~~~~~~~~~~~i~~-~~g~~~~~~~~~~DiTe~k~~e~~l 149 (162)
T 3sw1_A 100 REVLRNYRKDGSAFWNELSITPVKS-DFDQRTYFIGIQKDVSRQVELEREL 149 (162)
T ss_dssp EEEEEEECTTCCEEEEEEEEEEEEC-SSSSCEEEEEEEEECHHHHHHHHHH
T ss_pred cceEEEECCCCCEEEEEEEEEEeec-CCCCEEEEEEEEEeCcHHHHHHHHH
Confidence 8888888999999999999999998 7899999999999999999998776
No 19
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=99.73 E-value=1.9e-16 Score=111.70 Aligned_cols=110 Identities=11% Similarity=0.137 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCCeEE
Q 022983 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (289)
Q Consensus 15 ~~~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (289)
.++++++.++++++++++++|.+ |+++++|+++++++||++++++|+++..+.++.... ........+..+..+..
T Consensus 8 ~se~~~~~l~e~~~d~i~~~d~~---g~i~~vN~a~~~l~Gy~~~el~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 83 (117)
T 2r78_A 8 FQSNAYRALFEHAIDGIFIMDAE---GHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDSG-WAAASLARIVGGEPLRE 83 (117)
T ss_dssp HHHHHHHHHHHHCSSEEEEECTT---SBEEEECHHHHHHHCCCHHHHTTCBTTTTTTCSTTS-HHHHHHHHHHTTCCEEE
T ss_pred HhHHHHHHHHhcCCceEEEECCC---CCEEEecHHHHHHHCcCHHHHcCCCHHHhCCccchh-HHHHHHHHHHcCCcEEE
Confidence 66788999999999999999999 999999999999999999999999876664433222 22234455566677888
Q ss_pred EEEEEecCCCEEEEEEEEEEeecCCCCcEEEEEEEEeccc
Q 022983 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (289)
Q Consensus 95 e~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 134 (289)
+.+.++++|..+|+.++..|+. +|. ++++++|||
T Consensus 84 e~~~~~kdG~~~~v~~~~~~~~---~g~---~~~i~~DIT 117 (117)
T 2r78_A 84 ERTVWTRNGDQLTVELSAHLLP---DGK---ILGIARDVS 117 (117)
T ss_dssp EEEEECTTSCEEEEEEEEEECT---TSC---EEEEEEC--
T ss_pred EEEEEecCCCEEEEEEEEEEec---CCe---EEEEEEeCC
Confidence 8889999999999999999884 344 678889997
No 20
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=99.72 E-value=7e-17 Score=114.08 Aligned_cols=112 Identities=20% Similarity=0.253 Sum_probs=78.8
Q ss_pred hCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCC----eEEEEEEEec
Q 022983 26 ELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP----IEVNLLNYKK 101 (289)
Q Consensus 26 ~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~e~~~~~~ 101 (289)
+++++++++|.+ |+|+++|+++++++||++++++|++...+.++.........+......+.. ...+...+++
T Consensus 1 ~~~d~i~~~d~~---g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (119)
T 2vv6_A 1 TIPDAMIVIDGH---GIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGKRR 77 (119)
T ss_dssp -CCCEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEEECT
T ss_pred CCcceEEEECCC---CeEEEEhHHHHHHhCCCHHHHcCCCHHHhCCchHHHHHHHHHHHHhcCCCcccCCCceEEEEEeC
Confidence 368999999999 999999999999999999999999987776554433333333333333332 2346677899
Q ss_pred CCCEEEEEEEEEEeecCCCCcEEEEEEEEecccccHHHHhcc
Q 022983 102 DGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (289)
Q Consensus 102 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~~e~~l 143 (289)
||..+|+.+++.|+.+ . +. ..++++++|||++|++|++|
T Consensus 78 dG~~~~~~~~~~~~~~-~-~~-~~~~~~~~DITerk~~e~~l 116 (119)
T 2vv6_A 78 DGTTFPMHLSIGEMQS-G-GE-PYFTGFVRDLTEHQQTQARL 116 (119)
T ss_dssp TSCEEEEEEEEEEEEE-T-TE-EEEEEEEEECC---------
T ss_pred CCCEEEEEEEEEEEEE-C-Ce-EEEEEEEEEcHHHHHHHHHH
Confidence 9999999999999976 3 33 46889999999999998876
No 21
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=99.71 E-value=4.3e-17 Score=114.40 Aligned_cols=111 Identities=9% Similarity=0.083 Sum_probs=93.9
Q ss_pred CCCEEEEEe-CCCCCccEEEccHHHHHHhCCCccccCCCC-CCCccCCCCCHHHHHHHHHHHHhCCCeEEEEEEEecCCC
Q 022983 27 LPDSFTITD-PSISGHPIVFASRGFLKMSGFSRAEIIGRN-GRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGT 104 (289)
Q Consensus 27 ~~~~i~~~d-~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~ 104 (289)
+++++|.+| .. ++++|+|+++++++||+++++.+.. +..+++|++.+.....+...+..+..+..++++++++|.
T Consensus 2 a~~giw~~d~~~---~~~~~~n~~~~~l~G~~~~e~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~ 78 (115)
T 3h9w_A 2 TKAIPWKINWQT---MAFEYIGPQIEALLGWPQGSWKSVEDWATRMHPEDQEWVVNFCVKQSECGVDHEADYRALHRDGH 78 (115)
T ss_dssp -CCEEEEEETTT---TEEEEECTHHHHHHCSCGGGCCBHHHHHHSBCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSC
T ss_pred cceEEEEEEcCC---CcEEEEChhHHHHhCCChHHccCHHHHHHhcCHHHHHHHHHHHHHHHhcCCcccEEEEEEcCCCC
Confidence 568999999 55 8899999999999999999998832 334667777677777777888888888999999999999
Q ss_pred EEEEEEEEEEeecCCCCcEEEEEEEEecccccHHHHh
Q 022983 105 PFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141 (289)
Q Consensus 105 ~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~~e~ 141 (289)
.+|+...+.|+.+ .+|.+.+++|+.+|||++|++|+
T Consensus 79 ~~w~~~~~~~~~d-~~G~~~~~~G~~~Dit~~k~~~~ 114 (115)
T 3h9w_A 79 YVWIRDVVHVVRD-DSGEVEALIGFMFDISLEHHHHH 114 (115)
T ss_dssp EEEEEEEEEEEEC-TTSCEEEEEEEEEECGGGGC---
T ss_pred EEEEEEEEEEEEC-CCCCEEEEEEEEeccCccccccc
Confidence 9999999999998 89999999999999999999864
No 22
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.70 E-value=2.7e-16 Score=131.34 Aligned_cols=118 Identities=38% Similarity=0.729 Sum_probs=108.4
Q ss_pred HHHhhCCCEEEEEeC---CCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCCeEEEEEE
Q 022983 22 EALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLN 98 (289)
Q Consensus 22 ~~~~~~~~~i~~~d~---~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 98 (289)
.++++++++++++|. + |+++++|+++++++||++++++|+++..+.++.........+...+..+..+..+.+.
T Consensus 15 ~~~~~~~~~i~~~D~~~~~---g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 91 (332)
T 2wkq_A 15 TTLERIEKNFVITDPRLPD---NPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRATVRKIRDAIDNQTEVTVQLIN 91 (332)
T ss_dssp CCGGGCCSEEEEECTTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred hHhhcCCCcEEEecCCCCC---CCEEEeehHHHHHhCCCHHHHcCCCchhhcCCCCCHHHHHHHHHHHHcCCeeEEEEEE
Confidence 468999999999999 8 9999999999999999999999999888888887777778888888888889999999
Q ss_pred EecCCCEEEEEEEEEEeecCCCCcEEEEEEEEecccccHHHHhcc
Q 022983 99 YKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (289)
Q Consensus 99 ~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~~e~~l 143 (289)
.+++|..+|+.+++.|+.+ ..|.+.+++++.+|||++++.|++.
T Consensus 92 ~~~dG~~~~~~~~~~pi~d-~~g~~~~~v~~~~DITe~k~~e~~~ 135 (332)
T 2wkq_A 92 YTKSGKKFWNLFHLQPMRD-QKGDVQYFIGVQLDGTEHVRDAAER 135 (332)
T ss_dssp ECTTCCEEEEEEEEEEEEC-TTSCEEEEEEEEEEESSCCCHHHHH
T ss_pred EcCCCCEEEEeeEEEEeEc-CCCCEEEEEEEeccCchhhhhhhhc
Confidence 9999999999999999998 7899999999999999998886655
No 23
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=99.69 E-value=1.7e-16 Score=117.74 Aligned_cols=123 Identities=12% Similarity=0.117 Sum_probs=101.3
Q ss_pred HHHHHHHHHHhhCCCEEEEEe-CCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCCeE
Q 022983 15 RYTLWVHEALDELPDSFTITD-PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIE 93 (289)
Q Consensus 15 ~~~~~l~~~~~~~~~~i~~~d-~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (289)
...++|+.+++++|++++++| .+ |+++++|+++++++|++ +++|+++..++++.........+..++..+.+..
T Consensus 14 ~~~~~~~~~~~~~~~~i~~~d~~~---~~i~~~N~~~~~~~g~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 88 (158)
T 3k3c_A 14 GAAEDVRRIFEHIPAILVGLEGPD---HRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQS 88 (158)
T ss_dssp CCHHHHHHHHHHCSSEEEEEETTT---TEEEEECHHHHHHCTTC--CSTTSBHHHHSGGGGGTTHHHHHHHHHHHCCCEE
T ss_pred HHHHHHHHHHhcCCceEEEEECCC---cEeHHHHHHHHHHcCCc--hhcCCcHHHhCCchhHHHHHHHHHHHHHhCCccc
Confidence 345689999999999999999 99 99999999999999999 8999998777766555556667777777777754
Q ss_pred EE-EEE--Ee-cC-CCEEEEEEEEEEeecCCCCcEEEEEEEEecccccHHHHhcc
Q 022983 94 VN-LLN--YK-KD-GTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (289)
Q Consensus 94 ~e-~~~--~~-~~-g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~~e~~l 143 (289)
.+ ... .+ .+ |..+|+.+...|+.+ .+|.+.+++++++|||++|++|+++
T Consensus 89 ~~~~~~~~~~~~~~g~~~~~~~~~~pi~~-~~g~~~g~~~~~~DITe~k~~e~~l 142 (158)
T 3k3c_A 89 GSEWRLQTDYDGSGVEERYFDFVVTPRRR-ADGSIEGVQLIVDDVTSRVRARQAA 142 (158)
T ss_dssp EEEEEEEEESSSSCEEEEEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHHHHHHH
T ss_pred ccceeEEeccCCCCcceEEEEEEEEEeEC-CCCCEEEEEEEEEehhHHHHHHHHH
Confidence 43 222 22 22 677899999999998 7999999999999999999998776
No 24
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=99.69 E-value=8.7e-17 Score=118.35 Aligned_cols=120 Identities=16% Similarity=0.121 Sum_probs=93.8
Q ss_pred HHHHHHHHHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCCeEE
Q 022983 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (289)
Q Consensus 15 ~~~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (289)
+.+..+..+++++++|++++|.+ |+|++||+++++++|+++++++|+++..+++. ....+...+..++..+.+...
T Consensus 19 ~~~~~l~~il~~~~~gi~v~D~~---g~I~~~N~a~~~~~G~~~~eviG~~~~~~~p~-~~~~~~~~l~~vl~~G~~~~~ 94 (152)
T 3mxq_A 19 KSRLLLSELLDQLSFALCIVRND---YVIVKVNEYFESRVIFDGETMQGKNILELFPE-SADYLKRKIDTALVIESSSFS 94 (152)
T ss_dssp HHHHHHHHHHHHHCCEEEEEETT---SBEEEECHHHHHTSSSCHHHHTTSBHHHHSGG-GHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEcCC---CEEEEECHHHHHHHCcCHHHHCCCCHHHhcCC-hHHHHHHHHHHHHhcCCceee
Confidence 55667899999999999999999 99999999999999999999999998888766 444555667777877765322
Q ss_pred EE---------E---EEecCCCEEEEEEEEEEeecCCCCcEEEEEEEEecccccHHH
Q 022983 95 NL---------L---NYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (289)
Q Consensus 95 e~---------~---~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~~ 139 (289)
.. . ...++|...|..+++.|+.+ .+|.+.+++.+++|||+++.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~Pl~d-~~G~v~gv~~ii~DVTe~~~a 150 (152)
T 3mxq_A 95 SWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHS-EDGTIEHVCLCVYDVTIQASQ 150 (152)
T ss_dssp ECCSSSCSSCC----------CCEEEEEEEEEEEC-TTSCEEEEEEEEEEEECC---
T ss_pred ecccccccccccccCCCCCCCcEEEEEEEEEEEEC-CCCCEEEEEEEEEECCHHHhc
Confidence 11 1 12345677888999999999 899999999999999999876
No 25
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=99.69 E-value=6.7e-16 Score=107.39 Aligned_cols=111 Identities=16% Similarity=0.225 Sum_probs=90.8
Q ss_pred HHHHHHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCCeEEE-E
Q 022983 18 LWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN-L 96 (289)
Q Consensus 18 ~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e-~ 96 (289)
++++.+++++|++++++|.+ |+++++|+++++++|+++++++|++...++ |.........+...+. +.....+ .
T Consensus 3 ~~~~~~~~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~ 77 (114)
T 3luq_A 3 ERLRLFTEHAPAALAMFDRE---MRYLAVSRRWREDYGLGDGDILGMSHYDIF-PEIGEEWKSVHRRGLA-GEVIRVEED 77 (114)
T ss_dssp HHHHHHHHTCSSEEEEEETT---CBEEEECHHHHHHTTCCSSCCTTCBHHHHC-TTCCHHHHHHHHHHHT-TCCEEEEEE
T ss_pred HHHHHHHhcCCceEEEEcCC---cEEEEECHHHHHHHCCCHHHHcCCcHHHHC-CccHHHHHHHHHHHhc-CCcceeeee
Confidence 56888999999999999999 999999999999999999999999977776 5555555444444444 4544443 3
Q ss_pred EEEecCCCEEEEEEEEEEeecCCCCcEEEEEEEEeccc
Q 022983 97 LNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (289)
Q Consensus 97 ~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 134 (289)
...+++|..+|+.+...|+.+ .+|.+.+++++.+|||
T Consensus 78 ~~~~~~g~~~~~~~~~~p~~~-~~g~~~~~~~~~~DIT 114 (114)
T 3luq_A 78 CFVRADGRTQWLRWEVRPWYE-GEGRVGGVVIFTEDIT 114 (114)
T ss_dssp EEEC--CCEEEEEEEEEEEEC-TTSCEEEEEEEEEECC
T ss_pred EEEcCCCcEEEEEEEEEEeEC-CCCCEEEEEEEEeeCC
Confidence 778899999999999999998 7999999999999997
No 26
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.67 E-value=1.4e-15 Score=120.06 Aligned_cols=111 Identities=20% Similarity=0.465 Sum_probs=103.1
Q ss_pred HHHHHHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCCeEEEEE
Q 022983 18 LWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLL 97 (289)
Q Consensus 18 ~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 97 (289)
++++.++++++++++++|.+ |+|+++|++|++++||++++++|+++..+.++.........+++.+..+..|..++.
T Consensus 111 ~~~~~~~~~~~~~i~~~d~~---g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 187 (227)
T 3ewk_A 111 ARLKQAMDANSEMILLTDRA---GRIIYANPALCRFSGMAEGELLGQSPSILDSPLADQETLAAMQEALQAGQPWSGRLL 187 (227)
T ss_dssp HHHHHHHHTCCSEEEEECTT---SCEEEECHHHHHHHTCCTHHHHSSCGGGGBCTTSCHHHHHHHHHHHHHTCCEECCEE
T ss_pred HHHHHHHhcCcCeEEEEcCC---CcEEEEchHHHHHhCCCHHHHcCCChhhccCCCCCHHHHHHHHHHHHcCCceeEEEE
Confidence 46778999999999999999 999999999999999999999999998888888888888889999999999999999
Q ss_pred EEecCCC------EEEEEEEEEEeecCCCCcEEEEEEEEec
Q 022983 98 NYKKDGT------PFWMLFKMSLVFGKEDGRATHFVAVQVP 132 (289)
Q Consensus 98 ~~~~~g~------~~~~~~~~~~~~~~~~g~~~~~~~~~~D 132 (289)
.++++|. .+|+.+++.|+.+ .+|.+.+++++.+|
T Consensus 188 ~~~k~G~~~~dg~~~~~~~~~~pi~d-~~g~~~~~v~i~~D 227 (227)
T 3ewk_A 188 NRRRTGPAPHDAEDYWAEISTTPIHT-DGNGLVGYVQIQHD 227 (227)
T ss_dssp EEEECCSSSSCEEEEEEEEEEEEEEC-SSSCEEEEEEEEEC
T ss_pred EECCCCCcCcccceEEEEEEEEEEEC-CCCCEEEEEEEecC
Confidence 9999987 8999999999998 89999999999887
No 27
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=99.66 E-value=9.4e-16 Score=117.17 Aligned_cols=123 Identities=12% Similarity=0.121 Sum_probs=98.8
Q ss_pred HHHHHHHHHHhhCCCEEEEEe-CCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCCeE
Q 022983 15 RYTLWVHEALDELPDSFTITD-PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIE 93 (289)
Q Consensus 15 ~~~~~l~~~~~~~~~~i~~~d-~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (289)
+.+++|+.+++++|++++++| .+ |+++++|+++++++|++ +++|+++..++++.........+..++..+....
T Consensus 34 ~~~~~l~~l~~~~~~~i~~~d~~~---g~i~~~N~a~~~l~G~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 108 (185)
T 3kx0_X 34 GAAEDVRRIFEHIPAILVGLEGPD---HRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQS 108 (185)
T ss_dssp CCHHHHHHHHHHCSSEEEEEETTT---TEEEEECHHHHHHCCCC--SCTTSBHHHHCTTSCSSSSHHHHHHHHHHCCCEE
T ss_pred hhHHHHHHHHhcCCceEEEEECCC---cEEEEEcHHHHHHcCCc--cccCCcHHHHCCchhhhhHHHHHHHHHHcCCccc
Confidence 355789999999999999999 99 99999999999999999 8999998877776655555566677777777755
Q ss_pred EE-EEE--Eec-C-CCEEEEEEEEEEeecCCCCcEEEEEEEEecccccHHHHhcc
Q 022983 94 VN-LLN--YKK-D-GTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (289)
Q Consensus 94 ~e-~~~--~~~-~-g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~~e~~l 143 (289)
.+ ... .++ + |...|+.+...|+.+ .+|.+.+++++++|||++|++|+++
T Consensus 109 ~~~~~~~~~~~~~gg~~~~~~~~~~pi~~-~~g~~~g~~~~~~DITerk~~e~~~ 162 (185)
T 3kx0_X 109 GSEWRLQTDYDGSGVEERYFDFVVTPRRR-ADGSIEGVQLIVDDVTSRVRARQAA 162 (185)
T ss_dssp EEEEEEC--------CCEEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHTTCC--
T ss_pred ccceeEEeeccCCCCccEEEEEEEEEEEC-CCCCEEEEEEEEEeCCHHHHHHHHH
Confidence 44 222 222 2 778999999999998 7999999999999999999998773
No 28
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=99.65 E-value=4.9e-16 Score=108.97 Aligned_cols=115 Identities=10% Similarity=0.047 Sum_probs=101.3
Q ss_pred HHHHHHHHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCC--CCccCCCCCHHHHHHHHHHHHhCCCeE
Q 022983 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNG--RMFQGPRTNRRTIMEIREAIREERPIE 93 (289)
Q Consensus 16 ~~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (289)
++++|+.++++++++++.+|.+ +.++++|+++.+++||+++++.+.+. ..+++|++.......+...+..+..+.
T Consensus 2 s~~~~~~l~~~~~~~i~~~d~~---~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~ 78 (118)
T 3icy_A 2 NAEELQALVDNIPAAIYHLDVS---GQATIRFRPPAFLKTLVSEHAGTTRLNTLSMIHHDDRHMLSNAYSKLREAKHSLT 78 (118)
T ss_dssp HHHHHHHHHTTCCCCCEEECTT---SCEEECCCCCGGGGGGEEEETTEEEEGGGGGBCGGGHHHHHHHHHHHHHSCCEEE
T ss_pred cHHHHHHHHhcCCceEEEEEcC---CCceEEechhHhhcCCCHHHccCChhHHHHHcCHHHHHHHHHHHHHHHhcCCCce
Confidence 3567899999999999999999 99999999999999999999887653 456677777777777777777778888
Q ss_pred EEEEEEecCCCEEEEEEEEEEeecCCCCcEEEEEEEEeccc
Q 022983 94 VNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (289)
Q Consensus 94 ~e~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 134 (289)
.++++.+++|...|+.....|+.+ ++|.+.+++++++|||
T Consensus 79 ~e~r~~~~~g~~~w~~~~~~~~~~-~~g~~~~~~g~~~DIT 118 (118)
T 3icy_A 79 LVYRIVTPEGKLHWIEDHMRSSFS-DDGLFSGIDGILCEVT 118 (118)
T ss_dssp EEEEEECTTCCEEEEEEEEEEEEC-TTSCEEEEEEEEEECC
T ss_pred EEEEEECCCCCEEEEEEEEEEEEC-CCCCEEEEEEEEEecC
Confidence 899999999999999999999998 8999999999999998
No 29
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=99.64 E-value=2.3e-15 Score=108.81 Aligned_cols=116 Identities=39% Similarity=0.742 Sum_probs=104.4
Q ss_pred HHHHHhhCCCEEEEEeC---CCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCCeEEEE
Q 022983 20 VHEALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNL 96 (289)
Q Consensus 20 l~~~~~~~~~~i~~~d~---~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~ 96 (289)
++.++++++++++++|. + |.++++|+++++++|++.++++|+++..+.++.........+...+..+..+..+.
T Consensus 4 l~~~~~~~~~~i~~~d~~~~~---~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (146)
T 2v0u_A 4 LATTLERIEKNFVITDPRLPD---NPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIRDAIDNQTEVTVQL 80 (146)
T ss_dssp CCCTGGGSSSCEEEECTTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHhcCCCcEEEEcCCCCC---ceEEEEcHHHHHHHCcCHHHHcCCCHHHhcCCcCChHHHHHHHHHHhcCCCcceEE
Confidence 34578999999999999 8 99999999999999999999999998888777777777777788888888888888
Q ss_pred EEEecCCCEEEEEEEEEEeecCCCCcEEEEEEEEecccccHHH
Q 022983 97 LNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (289)
Q Consensus 97 ~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~~ 139 (289)
...+++|..+|+.+...|+.+ .+|.+.+++++.+|||++|+.
T Consensus 81 ~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~Dit~~~~~ 122 (146)
T 2v0u_A 81 INYTKSGKKFWNLFHLQPMRD-QKGDVQYFIGVQLDGTEHVRD 122 (146)
T ss_dssp EEECTTCCEEEEEEEEEEEEC-TTSCEEEEEEEEEEESSCCCH
T ss_pred EEEecCCcEEEEEEEEEEeEC-CCCCEEEEEEEEeechHHHHH
Confidence 888999999999999999998 789999999999999999984
No 30
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=99.64 E-value=8.9e-15 Score=104.01 Aligned_cols=120 Identities=13% Similarity=0.163 Sum_probs=87.3
Q ss_pred cchHHHhhchHHHHHHHHHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccC--CCCCCCccCCCCCHHHHHHH
Q 022983 5 LGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEII--GRNGRMFQGPRTNRRTIMEI 82 (289)
Q Consensus 5 l~~~~~~l~~~~~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~--g~~~~~l~~~~~~~~~~~~~ 82 (289)
.++.++.+. +++++++.+++++|++++++|.+ |+++++|+++++++||++++++ |++...+.+ +.......+
T Consensus 5 r~~~e~~L~-~~~~~~~~l~e~~~~~i~~~d~~---g~i~~~N~a~~~~~G~~~~el~g~g~~~~~~~~--~~~~~~~~~ 78 (126)
T 3bwl_A 5 RKRREKRLE-ETSSRLEALFENSPDMIDVLDAD---GTICEVNQRFCAELGYDESEVLGRSIWEFDLMF--DAEDVQTQL 78 (126)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHCSSEEEEECTT---CBEEEECHHHHHHHTCCGGGTTTSBGGGTBTTC--CHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHhhCCcEEEEEcCC---CCEEEEcHHHHHHhCCCHHHHhhCCCchhhccC--CHHHHHHHH
Confidence 455666666 77889999999999999999999 9999999999999999999994 566555544 222221111
Q ss_pred HHHHHhCCCeEEEEEEEecCCCEEEEEEEEEEeecCCCCcEEEEEEEEeccc
Q 022983 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (289)
Q Consensus 83 ~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 134 (289)
.. ...+.....+..+.+++|..+|+.++..|+.. .|.. .++++++|||
T Consensus 79 ~~-~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~~--~~~~-~~~~~~~DIT 126 (126)
T 3bwl_A 79 SG-FSVDERRKFEGLYERRDGSTMSVEVHLLRFNL--EGED-RFLAISRDIT 126 (126)
T ss_dssp HT-CCTTCEEEEEEEEECTTSCEEEEEEEEEEEEE--TTEE-EEEEEEEEC-
T ss_pred HH-HhcCCCcceEEEEEeCCCCEEEEEEEeEEEec--CCcE-EEEEEEEeCC
Confidence 11 11233345566778999999999988888754 4543 5778899997
No 31
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=99.64 E-value=3.1e-15 Score=105.62 Aligned_cols=112 Identities=11% Similarity=0.085 Sum_probs=93.7
Q ss_pred HHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCC-CeEEEEEEEe
Q 022983 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER-PIEVNLLNYK 100 (289)
Q Consensus 22 ~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~ 100 (289)
.+++++++++++.|.+ |+++++|+++++++||++++++|+++..+.+|++.......+...+..+. ....++++++
T Consensus 7 ~~~~~~~~~i~~~d~~---g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~e~r~~~ 83 (121)
T 2kdk_A 7 EINVKPTEFITRFAVN---GKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNLTDKHKAVLQSKEKILTDSYKFRA 83 (121)
T ss_dssp CCCCCSSEEEEEECTT---SBEEEECTHHHHHTCCCTTTSBTSBTTTTBCSSSHHHHHHHHHHHHTSSSCEEEEEEEEEC
T ss_pred ccccCCccEEEEECCC---eeEEEEChhHHHHHCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhCCCCCccEEEEEEE
Confidence 3678899999999999 99999999999999999999999998888888776666555566555433 3577888999
Q ss_pred cCCCEEEEEEEEEEeecCCC-CcEEEEEEEEecccccH
Q 022983 101 KDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPIVSRK 137 (289)
Q Consensus 101 ~~g~~~~~~~~~~~~~~~~~-g~~~~~~~~~~DITe~k 137 (289)
++|..+|+.....|+.+ .. +.+..++++.+||++.+
T Consensus 84 ~dG~~~~~~~~~~~~~d-~~~~~~~~~v~~~~~i~~~~ 120 (121)
T 2kdk_A 84 KDGSFVTLKSQWFSFTN-PDTKELEYIVSVNTLVLGHS 120 (121)
T ss_dssp SSSCEEEEEEEEEEEEC-CSSSCEEEEEEEEECCSSCC
T ss_pred cCCCEEEEEEEEEEEEC-CCCCeeeEEEEEEEeccccC
Confidence 99999999999999987 54 56777899999999864
No 32
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=99.62 E-value=7.5e-15 Score=102.80 Aligned_cols=109 Identities=10% Similarity=0.109 Sum_probs=86.8
Q ss_pred HHHHHHHHHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCCeEE
Q 022983 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (289)
Q Consensus 15 ~~~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (289)
+..++++.++++++++++++|.+ |+++++|+++++++||++++++|+++..+.++..... +..+..+..+..
T Consensus 10 ~~~~~~~~~~~~~~~~i~~~d~~---g~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 81 (118)
T 3olo_A 10 LEFKFAHYLINNAVEASFCLGDN---WQFLYVNDATCRMTEYSREQLLSMNLQDIDVDFALHD-----WEEIRQKNNYTF 81 (118)
T ss_dssp HHHHHHHHHHHHCSSEEEEECTT---SBEEEECHHHHHHHCCCHHHHTTCBGGGTBTTGGGSC-----HHHHHHHSEEEE
T ss_pred HHHHHHHHHHhcCCceEEEECCC---CcEEEEHHHHHHHHCCCHHHHhCCChhhcccccCHHH-----HHHHHhcCcEEE
Confidence 34456788999999999999999 9999999999999999999999999877764332222 233344556778
Q ss_pred EEEEEecCCCEEEEEEEEEEeecCCCCcEEEEEEEEeccc
Q 022983 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (289)
Q Consensus 95 e~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 134 (289)
+....+++|..+|+.++..|+.. .+. ..++++++|||
T Consensus 82 e~~~~~~~g~~~~~~~~~~~~~~--~~~-~~~~~~~~DIT 118 (118)
T 3olo_A 82 KTRYRSQSGRIFLVEMSLTFLED--QER-RFSCVFVREKS 118 (118)
T ss_dssp EEEEECTTCCEEEEEEEEEEEEE--TTE-EEEEEEEEEC-
T ss_pred EEEEEccCCCEEEEEEEEEEEEE--CCc-cEEEEEEEeCC
Confidence 88889999999999999999976 343 46778999997
No 33
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=99.60 E-value=2.7e-15 Score=106.29 Aligned_cols=116 Identities=12% Similarity=0.118 Sum_probs=87.1
Q ss_pred HHHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCCeEEEEEEEe
Q 022983 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYK 100 (289)
Q Consensus 21 ~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 100 (289)
+.++++++++++++|.+ |+++++|+++++++|+++++++|+++..+.++.+.......+......+.. ..++...+
T Consensus 2 ~~l~~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 77 (126)
T 3mjq_A 2 KNFLETIEDMILIINRE---GRLLYANTAVPKKLGYTHEELMSMHILTITSAGKMAEGEKILAELFAGKKE-SLPLSLEK 77 (126)
T ss_dssp CTTGGGCSSEEEEEETT---SBEEEECTHHHHHHSCCHHHHHHSBHHHHHCTTCHHHHHHHHHHHHHTCCS-EEEEEEEC
T ss_pred hhHHhhCCceEEEEeCC---CcEEEEcHHHHHHHCCCHHHHcCCCHHHHcCchhHHHHHHHHHHHHhCCCc-eeEEEEEc
Confidence 45789999999999999 999999999999999999999999877777766555555555555544444 67788888
Q ss_pred cCCCEEEEEEEEEEeecCCCCcEEEEEEEEecccccHHHHhcc
Q 022983 101 KDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (289)
Q Consensus 101 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~~e~~l 143 (289)
++|..+|+.+...|... .+ ..+++++++|||++|+++++.
T Consensus 78 ~~g~~~~~~~~~~~~~~--~~-~~~~~~~~~DITe~k~a~~~~ 117 (126)
T 3mjq_A 78 KEGTSIPAKARIWQGKW--HN-EPCLFAIIKDLSKEERASSPP 117 (126)
T ss_dssp TTSCEEEEEEEEEEEES--SS-SEEEEEEEEECC---------
T ss_pred cCCCEEEEEEEEEeeeE--CC-ceEEEEEEEechHHHHhhccc
Confidence 99999999999887754 33 467889999999999997776
No 34
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=99.59 E-value=8.3e-15 Score=109.09 Aligned_cols=123 Identities=20% Similarity=0.245 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCC---
Q 022983 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP--- 91 (289)
Q Consensus 15 ~~~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~--- 91 (289)
..++++..++++++++++++|.+ |.++++|++++.++|++.++++|+++..++++.........+......+..
T Consensus 37 ~~~~~~~~~l~~~~~~i~~~d~~---g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (167)
T 1v9y_A 37 AADGIFFPALEQNMMGAVLINEN---DEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVE 113 (167)
T ss_dssp ---CCHHHHHHTCSSEEEEECTT---SBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTTHHHHHHHHHC-------
T ss_pred hhhHHHHHHHHhCCCCEEEECCC---CcEEEECHHHHHHhCCCHHHHcCCChhhccCccccchHHHHHHHHhhcCCCccc
Confidence 45567889999999999999999 999999999999999999999999887777665544444444444433322
Q ss_pred -eEEEEEEEecCCCEEEEEEEEEEeecCCCCcEEEEEEEEecccccHHHHhcc
Q 022983 92 -IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (289)
Q Consensus 92 -~~~e~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~~e~~l 143 (289)
+..+.....++|..+|+.+...|+.. .|.. .++++++|||+++++|+++
T Consensus 114 ~~~~~~~~~~~~g~~~~~~~~~~~~~~--~g~~-~~~~~~~DiT~~~~~e~~l 163 (167)
T 1v9y_A 114 GMSRELQLEKKDGSKIWTRFALSKVSA--EGKV-YYLALVRDASVEMAQKEQT 163 (167)
T ss_dssp ---CEEEEECTTSCEEEEEEEEEEEEE--TTEE-EEEEEEEC-----------
T ss_pred ccceEEEEEcCCCcEEEEEEEEEEEec--CCCE-EEEEEEecCcHHHHHHHHH
Confidence 44567778899999999999999953 6665 4899999999999997776
No 35
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=99.59 E-value=6.1e-14 Score=100.31 Aligned_cols=115 Identities=26% Similarity=0.486 Sum_probs=97.6
Q ss_pred HHHHHHHhhCCCEEEEEeC---CCCCccEEEccHHHHHHhCCCccccCCCC--CCCccCCCCCHHHHHHHHHHHHhCCCe
Q 022983 18 LWVHEALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRN--GRMFQGPRTNRRTIMEIREAIREERPI 92 (289)
Q Consensus 18 ~~l~~~~~~~~~~i~~~d~---~~~~g~i~~~N~~~~~~~G~~~~e~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (289)
+.+...+++++++++++|. + |+++++|+++++++|++.++++|++ ...+.++.........+...+..+..+
T Consensus 19 ~~~~~~~~~~~~~i~~~d~~~~~---g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (138)
T 2l0w_A 19 DTIIRKFEGQSRKFIIANARVEN---CAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQALLGAEER 95 (138)
T ss_dssp HHHHHHHTTTTSEEEEEESSSTT---CBEEEECSHHHHHHSCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHTTCSSCE
T ss_pred HHHHHHHhcCCCCEEEEecCCCC---CEEEEeCHHHHHHhCCCHHHHcCCCCcccccCCcccchhHHHHHHHHHhhcCCc
Confidence 3455667889999999999 8 9999999999999999999999998 555666665565566666777677777
Q ss_pred EEEEEEEecCCCEEEEEEEEEEeecCCCCcEEEEEEEEeccccc
Q 022983 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (289)
Q Consensus 93 ~~e~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~ 136 (289)
..+....+++|..+|+.+...|+.+ .+|.+.+++++.+|||++
T Consensus 96 ~~~~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~Dit~~ 138 (138)
T 2l0w_A 96 KVEIAFYRKDGSCFLCLVDVVPVKN-EDGAVIMFILNFEVVMEK 138 (138)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEEEEEC
T ss_pred eeEEEEECCCCCEEEEEEEEEEEeC-CCCCEEEEEEEEEeccCC
Confidence 8888888999999999999999998 789999999999999975
No 36
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=99.58 E-value=9.7e-15 Score=102.68 Aligned_cols=116 Identities=9% Similarity=0.060 Sum_probs=94.2
Q ss_pred HHHHHHHHHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCC--CCCccCCCCCHHHHHHHHHHHHhCCCe
Q 022983 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN--GRMFQGPRTNRRTIMEIREAIREERPI 92 (289)
Q Consensus 15 ~~~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (289)
+.+++++.++++++++++++|.+ +|.++++|+++++++|+++++++|.+ +..+.+|++.......+.. +..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~i~~~d~~--~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 84 (125)
T 3eeh_A 8 KSERRVRELTEATNDILWEFTAD--LSEVLVINSAYEDIWGRSVAKLRENPHDFLNGIHPEDRELMKDTMQS-LMDGESA 84 (125)
T ss_dssp --CHHHHHHHSCCCCEEEEEETT--SSCEEEECTHHHHHHSSCHHHHHHCGGGGGGGBCHHHHHHHHHHHHH-HHTTCCE
T ss_pred HHHHHHHHHHhcCCceEEEEEcC--CCcEEEecHHHHHHHCCCHHHHccCcHHHHHhcCHHHHHHHHHHHHH-HHcCCCc
Confidence 55678899999999999999975 37999999999999999999998876 3444555444444444333 5567778
Q ss_pred EEEEEEEecCCCEEEEEEEEEEeecCCCCcEEEEEEEEeccc
Q 022983 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (289)
Q Consensus 93 ~~e~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 134 (289)
..++++.+++|...|+.+...|+.+ ..|.+.+++++.+|||
T Consensus 85 ~~e~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~DIT 125 (125)
T 3eeh_A 85 DVECRVNATEEYQRWVWIQGEPITN-DAGETVRVAGFARDIT 125 (125)
T ss_dssp EEEEEECGGGTTCEEEEEEEEEEEC-TTSCEEEEEEEEEECC
T ss_pred cEEEEEEcCCCCEEEEEEecEEEEC-CCCCEEEEEEEEEecC
Confidence 8888889999999999999999998 7999999999999997
No 37
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=99.58 E-value=1.2e-13 Score=94.54 Aligned_cols=107 Identities=27% Similarity=0.520 Sum_probs=89.5
Q ss_pred CEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCC--CCCccCCCCCHHHHHHHHHHHHhCCCeEEEEEEEecCCCEE
Q 022983 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN--GRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPF 106 (289)
Q Consensus 29 ~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~ 106 (289)
.+++++|....+|+++++|+++++++||++++++|++ ...+.++.........+...+..+..+..+....+++|..+
T Consensus 2 ~~i~i~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (110)
T 1byw_A 2 RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCF 81 (110)
T ss_dssp CEEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEE
T ss_pred CCEEEEeccCCCCcEEEECHHHHHHhCCCHHHHccCCCccccccCCcCCHHHHHHHHHHHhcCCCceEEEEEEcCCCCEE
Confidence 5788888743349999999999999999999999998 45555555555556667777777788888888889999999
Q ss_pred EEEEEEEEeecCCCCcEEEEEEEEeccccc
Q 022983 107 WMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (289)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~~~~~~~DITe~ 136 (289)
|+.+...|+.+ ..|.+.+++++.+|||++
T Consensus 82 ~~~~~~~~~~~-~~g~~~~~~~~~~DiTe~ 110 (110)
T 1byw_A 82 LCLVDVVPVKN-EDGAVIMFILNFEVVMEK 110 (110)
T ss_dssp EEEEEEEEEEC-TTCCEEEEEEEEEEEEEC
T ss_pred EEEEEEEEeec-CCCCEEEEEEEEEeccCC
Confidence 99999999998 789999999999999975
No 38
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=99.56 E-value=5.7e-14 Score=111.21 Aligned_cols=114 Identities=14% Similarity=0.182 Sum_probs=89.5
Q ss_pred HHHHHHHHHhhCCCEEEEEeCCCCCccEEEccHHHHHHh------------CCCccccCCCCCCCccCCCCCHHHHHHHH
Q 022983 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMS------------GFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83 (289)
Q Consensus 16 ~~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~------------G~~~~e~~g~~~~~l~~~~~~~~~~~~~~ 83 (289)
...+++.++++++++++++|.+ |+|+|+|+++++++ ||++++++|+++..+.+. +.....++
T Consensus 20 e~~~l~~iLd~~~~~vii~D~~---g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~~~~~~---~~~~~~~~ 93 (233)
T 3vol_A 20 HMARIKSALDNVSANVMIADND---LNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKN---PAHQRHLL 93 (233)
T ss_dssp HHHHHHHHHTTSSSEEEEEETT---SBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGGGGSSS---HHHHHHHH
T ss_pred HHHHHHHHHhcCCCcEEEECCC---CcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHHHHcCC---HHHHHHHH
Confidence 4467889999999999999999 99999999999999 899999999998877642 23333333
Q ss_pred HHHHhCCCeEEEEEEEecCCCEEEEEEEEEEeecCCCCcEEEEEEEEecccccHHHHhcc
Q 022983 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (289)
Q Consensus 84 ~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~~e~~l 143 (289)
..+. ..+..++. .+|. |+.++..|+.+ .+|.+.+++++++|||+++++|+++
T Consensus 94 ~~~~--~~~~~~~~---~~g~--~~~~~~~Pi~d-~~G~~~g~v~~~~DITe~~~~e~ei 145 (233)
T 3vol_A 94 ANLT--GVHKAELN---LGGR--RFSLDVVPVFN-DANERLGSAVQWTDRTEEHRAEQEV 145 (233)
T ss_dssp HTCC--SCEEEEEE---ETTE--EEEEEEEEEEC-TTCCEEEEEEEEEECHHHHHHHHHH
T ss_pred Hhcc--cceeEEEE---ECCE--EEEEEEEEEEC-CCCCEEEEEEEEehhhHHHHHHHHH
Confidence 3221 23444432 3453 67899999998 8999999999999999999997765
No 39
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=99.55 E-value=1.3e-15 Score=137.35 Aligned_cols=117 Identities=14% Similarity=0.104 Sum_probs=103.9
Q ss_pred HHHHHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCCeEEEEEE
Q 022983 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLN 98 (289)
Q Consensus 19 ~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 98 (289)
++..++++++++++++|.+ |+|+++|++|++++||+.++.+|++.....++.+.. ....+.+.+..++.+.+++++
T Consensus 519 ~~~~lle~a~~~i~~~D~~---grI~~~N~a~~~l~G~s~~e~~g~~~l~~~~~~~~~-~~~~i~~~l~~g~~~~~E~~~ 594 (635)
T 4eho_A 519 QASSQVHASMQPVLITDAE---GRILLMNDSFRDMLPAGSPSAVHLDDLAGFFVESND-FLRNVAELIDHGRGWRGEVLL 594 (635)
T ss_dssp SHHHHHHHCSSCCEEEETT---CCEEEECHHHHTTSCSSCCCCCSSGGGTTSSSSCTH-HHHHHHHHHHHCCCBCCCCEE
T ss_pred HHHHHHHhCCCcEEEECCC---CeEeeHHHHHHHHHCcChHHHcCcchhhccCCCCHH-HHHHHHHHHHcCCcEEEEEEE
Confidence 4667899999999999999 999999999999999999999999866666665544 455677788888889999999
Q ss_pred EecCCCEEEEEEEEEEeecCCCCcEEEEEEEEecccccHHHH
Q 022983 99 YKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140 (289)
Q Consensus 99 ~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~~e 140 (289)
+++||+.+|+.+++.|+++ .+|++.+++++.+|||++|++|
T Consensus 595 ~~~dG~~~~~~~~~~pv~d-~~G~v~g~v~i~~DITerK~aE 635 (635)
T 4eho_A 595 RGAGNRPLPLAVRADPVTR-TEDQSLGFVLIFSDATDRRTAD 635 (635)
T ss_dssp CCSSSSCEECCCCEEEECS-TTSSCCEEEECCCCCSSSCCCC
T ss_pred EccCCcEEEEEEEEEEEEC-CCCCEEEEEEEEEeCchHhhCC
Confidence 9999999999999999999 8999999999999999999874
No 40
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=99.54 E-value=5.2e-14 Score=100.79 Aligned_cols=112 Identities=11% Similarity=0.075 Sum_probs=83.5
Q ss_pred HHHHHHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhC-------C
Q 022983 18 LWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE-------R 90 (289)
Q Consensus 18 ~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~-------~ 90 (289)
..+..++++++++++++|.+ |+|+++|+++++++||++++++|+++..++++.........+......+ .
T Consensus 7 ~~l~~i~~~~~d~i~~~D~~---g~I~~~N~aa~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (129)
T 3mfx_A 7 ETIELFIQHLTEAMILVNAN---GFIRSCNQRSAELLDCPQVSLKGQDWRNFLTEHHQARYDNLLSHDVQLGTNCGQPVQ 83 (129)
T ss_dssp HHHHHHHTTCSSEEEEEETT---SBEEEECHHHHHHTTSCHHHHTTSBGGGGBCTTCCGGGGCTTC----------CCSC
T ss_pred HHHHHHHhcCCceEEEECCC---CEEEeEhHHHHHHHCcCHHHHcCCcHHHHcChHhHHHHHHHHHHHHhcCcccccccC
Confidence 46888999999999999999 9999999999999999999999999888887665443221111111111 1
Q ss_pred CeEEEEEEEecCCCEEEEEEEEEEeecCCCCcEEEEEEEEeccccc
Q 022983 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (289)
Q Consensus 91 ~~~~e~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~ 136 (289)
.+..++...++||+.+|+.++++|+.+ ++. .++++++|+...
T Consensus 84 ~~~~E~~~~rkdG~~~~velsis~i~~--~~~--~~v~~~~~~~~~ 125 (129)
T 3mfx_A 84 HPAQETTLICASGKAKDVELSISYIPG--HEP--MFVMVMHDLEHH 125 (129)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEECS--SSC--EEEEEEEEC---
T ss_pred CCceEEEEEcCCCCEEEEEEEEEEecC--CCc--EEEEEEechhhh
Confidence 235688889999999999999999975 222 467888887643
No 41
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=99.53 E-value=1.9e-13 Score=100.06 Aligned_cols=106 Identities=34% Similarity=0.562 Sum_probs=91.5
Q ss_pred HHHhhCCCEEEEEe---CCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCC-----------CHHHHHHHHHHHH
Q 022983 22 EALDELPDSFTITD---PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT-----------NRRTIMEIREAIR 87 (289)
Q Consensus 22 ~~~~~~~~~i~~~d---~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~-----------~~~~~~~~~~~~~ 87 (289)
.++++. ++++++| .+ |+++++|+++++++||++++++|+++..+.++.. .......+...+.
T Consensus 30 ~~~~~~-~~i~~~d~~d~~---g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (149)
T 3d72_A 30 GPVDTS-VALILCDLKQKD---TPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKYVDSNTINTMRKAID 105 (149)
T ss_dssp CSCCTT-SCEEEEETTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGGSTTSCCCTTCCCSSSCHHHHHHHHHHHH
T ss_pred HhhcCC-ccEEEEeccCCC---CcEEEECHHHHHHHCcCHHHHcCCChhHhCCccccccccccccccChHHHHHHHHHHH
Confidence 456664 8999999 67 9999999999999999999999999887776653 5666667777788
Q ss_pred hCCCeEEEEEEEecCCCEEEEEEEEEEeecCCCCcEEEEEEEEec
Q 022983 88 EERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVP 132 (289)
Q Consensus 88 ~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~D 132 (289)
.+..+..+....+++|..+|+.++..|+.+ .+|.+.+++++.+|
T Consensus 106 ~~~~~~~e~~~~~~dG~~~~~~~~~~~i~~-~~g~~~~~v~~~~D 149 (149)
T 3d72_A 106 RNAEVQVEVVNFKKNGQRFVNFLTMIPVRD-ETGEYRYSMGFQCE 149 (149)
T ss_dssp HTCCEEEEEEEECTTCCEEEEEEEEEEEEC-TTSSEEEEEEECCC
T ss_pred CCCceEEEEEEECCCCCEEEEEEEEEEEEc-CCCCEEEEEEEEeC
Confidence 888888898889999999999999999998 89999999998876
No 42
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=99.48 E-value=5.2e-14 Score=99.57 Aligned_cols=108 Identities=10% Similarity=0.081 Sum_probs=73.9
Q ss_pred HHHHHHHHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCCeEEE
Q 022983 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (289)
Q Consensus 16 ~~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 95 (289)
.+++++.++++++++++++|.+ |+++++|+++++++||++++++|+++..++++................+...
T Consensus 17 ~~~~~~~i~~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 90 (125)
T 3fc7_A 17 TRKKFESLVSDSPDGIVHLTTN---GTILSVNPSMAGRLGADPDTLVGQQLSAVMDSEAANQRLEAGKSAVENGTAT--- 90 (125)
T ss_dssp ---------CCSCCEEEEEETT---SBEEEECHHHHHHHTSCHHHHTTSBGGGSSCHHHHHHHHHHHHHHHHHTSCE---
T ss_pred HHHHHHHHHhcCCCeEEEEcCC---CeEEEECHHHHHHhCCCHHHHcCccHHHhCCHHHHHHHHHHHHHHhcCCCeE---
Confidence 5678899999999999999999 9999999999999999999999999887763222122222223444455433
Q ss_pred EEEEecCCC-EEEEEEEEEEeecCCCCcEEEEEEEEeccc
Q 022983 96 LLNYKKDGT-PFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (289)
Q Consensus 96 ~~~~~~~g~-~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 134 (289)
...+|. ..|+.+...|+.+ +|...+++++++|||
T Consensus 91 ---~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~DIT 125 (125)
T 3fc7_A 91 ---RSEDAVGGRHYHNQYIPVDS--HRKSDTFQLVSRDIT 125 (125)
T ss_dssp ---EEEEEETTEEEEEEEEESST--TTTTTEEEEEEEECC
T ss_pred ---EeEcCCCcEEEEEEEEeEec--CCCeEEEEEEEecCC
Confidence 123344 6788899999876 466678899999997
No 43
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.47 E-value=4.9e-13 Score=112.71 Aligned_cols=65 Identities=9% Similarity=0.109 Sum_probs=56.0
Q ss_pred HHHHHHHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHH
Q 022983 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIRE 84 (289)
Q Consensus 17 ~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~ 84 (289)
+++...+++++++.+++++.+ |+|+|+|+++..++||++++++|+++..+++|++.......+..
T Consensus 85 ~~~~~~~l~a~~~~i~v~~~~---G~i~yvs~~~~~~lGy~~~el~g~~~~~~ihp~D~~~~~~~l~~ 149 (361)
T 4f3l_A 85 EEFTQLMLEALDGFFLAIMTD---GSIIYVSESVTSLLEHLPSDLVDQSIFNFIPEGEHSEVYKILST 149 (361)
T ss_dssp HHHHHHHHHHTTEEEEEEETT---SBEEEECTTHHHHHCCCHHHHTTSBGGGGSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHhcCceEEEEcCC---ccEEEEechhhhhcCCCHHHhcCCcHHHhcCHHHHHHHHHHhcc
Confidence 445566889999999999999 99999999999999999999999999999998887666555443
No 44
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.44 E-value=1.8e-13 Score=115.37 Aligned_cols=108 Identities=8% Similarity=0.097 Sum_probs=94.6
Q ss_pred CEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCCeEEEEEEEecCCCEEEE
Q 022983 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWM 108 (289)
Q Consensus 29 ~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~ 108 (289)
..++..+.+ |.++|+|+++..++||++++++|+++..+++|++.+.....++..+..+..+..++++++++|..+|+
T Consensus 252 ~f~~~~~~d---g~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~g~~~~~eyR~~~kdG~~vWv 328 (361)
T 4f3l_A 252 EFTSRHSLE---WKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWL 328 (361)
T ss_dssp EEEEEECTT---SBEEEECTTSHHHHCCCHHHHTTSBGGGGBCHHHHHHHHHHHHHHHHHSEEECCCEEEECTTSEEEEE
T ss_pred eeEEEEcCC---ceEEEECChhhhhhCcCHHHHcCCCHHHeECHHHHHHHHHHHHHHHhCCCcceEEEEEEecCCCEEEE
Confidence 344556677 99999999999999999999999999899998887777777788887777667789999999999999
Q ss_pred EEEEEEeecCC-CCcEEEEEEEEecccccHHHH
Q 022983 109 LFKMSLVFGKE-DGRATHFVAVQVPIVSRKHMR 140 (289)
Q Consensus 109 ~~~~~~~~~~~-~g~~~~~~~~~~DITe~k~~e 140 (289)
.....|+.+ . +|.+..++++.+|||+++..+
T Consensus 329 ~~~~~~v~~-~~~g~~~~iv~~~~dITe~~~~~ 360 (361)
T 4f3l_A 329 QTHYYITYH-QWNSRPEFIVCTHTVVSYAEVRA 360 (361)
T ss_dssp EEEEEEEEC-TTTCCEEEEEEEEEECCHHHHHH
T ss_pred EEEEEEEEc-CCCCCeeEEEEEEEECChhHhhc
Confidence 999999998 5 799999999999999998764
No 45
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=99.43 E-value=3.8e-12 Score=89.90 Aligned_cols=106 Identities=16% Similarity=0.219 Sum_probs=78.7
Q ss_pred HHHHHHHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhC------------CCccccCCCCCCCccCCCCCHHHHHHHHH
Q 022983 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSG------------FSRAEIIGRNGRMFQGPRTNRRTIMEIRE 84 (289)
Q Consensus 17 ~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G------------~~~~e~~g~~~~~l~~~~~~~~~~~~~~~ 84 (289)
..+++.++++++++++++|.+ |+|+++|+++++++| |++++++|++...+.+. +.....+..
T Consensus 4 ~~rl~~il~~~~~gviv~D~~---g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~~~~~~---~~~~~~~~~ 77 (121)
T 4hi4_A 4 MARIASALDNVSANVMIADND---LNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKN---PAHQRHLLA 77 (121)
T ss_dssp HHHHHHHHTTSSSEEEEEETT---CBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGGGGCSS---HHHHHHHHH
T ss_pred HHHHHHHHhcCCccEEEEcCC---CeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHHHhcCC---HHHHHHHHh
Confidence 357889999999999999999 999999999999995 89999999997776532 222222222
Q ss_pred HHHhCCCeEEEEEEEecCCCEEEEEEEEEEeecCCCCcEEEEEEEEeccccc
Q 022983 85 AIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (289)
Q Consensus 85 ~~~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~ 136 (289)
... ..+..++. .+|. ++.+...|+.+ .+|.+.+++++.+|||++
T Consensus 78 ~~~--~~~~~~~~---~~~~--~~~~~~~pi~~-~~g~~~g~v~~~~DiTee 121 (121)
T 4hi4_A 78 NLT--GVHKAELN---LGGR--RFSLDVVPVFN-DANARLGSAVQWTDRTEE 121 (121)
T ss_dssp HCS--SCEEEEEE---ETTE--EEEEEEEEEEC-TTSCEEEEEEEEEECC--
T ss_pred CcC--CCcEEEEE---ECCE--EEEEEEEEEEC-CCCCEEEEEEEEEEecCC
Confidence 211 33443332 2444 45788999998 789999999999999974
No 46
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=99.43 E-value=3.7e-13 Score=93.61 Aligned_cols=93 Identities=17% Similarity=0.165 Sum_probs=68.6
Q ss_pred HHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCCeEEEEEEEec
Q 022983 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKK 101 (289)
Q Consensus 22 ~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 101 (289)
.+++++++.++++|.+ |+++|+|+++++++||++++++|+++..+.+|++.+.....+. ........+++++++
T Consensus 3 ~lle~~~d~i~v~d~~---G~i~yvn~~~~~~lGy~~~el~G~~~~~~ihp~D~~~~~~~~~---~~~~~~~~e~r~~~k 76 (111)
T 2vlg_A 3 FPLQTKTDIHAVLASN---GRIIYISANSKLHLGYLQGEMIGSFLKTFLHEEDQFLVESYFY---NEHHLMPCTFRFIKK 76 (111)
T ss_dssp ------CCEEEEECTT---SBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHH---CSCCSSCEEEEEECT
T ss_pred chhhcCCCEEEEEcCC---CeEEEEChHHHHHhCCCHHHHcCCcHHHeECHhHHHHHHHHHh---ccCCCccEEEEEEcC
Confidence 4789999999999999 9999999999999999999999999888888877655433221 222334567888999
Q ss_pred CCCEEEEEEEEEEeecCCCC
Q 022983 102 DGTPFWMLFKMSLVFGKEDG 121 (289)
Q Consensus 102 ~g~~~~~~~~~~~~~~~~~g 121 (289)
||+.+|+..++.++.+ ..+
T Consensus 77 dG~~~wve~~~~~v~~-~~~ 95 (111)
T 2vlg_A 77 DHTIVWVEAAVEIVTT-RAE 95 (111)
T ss_dssp TSCEEEEEEEEEEC------
T ss_pred CCCEEEEEEEEEEEec-ccC
Confidence 9999999999999987 443
No 47
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=99.42 E-value=6.2e-13 Score=93.55 Aligned_cols=109 Identities=14% Similarity=0.073 Sum_probs=84.2
Q ss_pred HHHHHHHHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCCeEEE
Q 022983 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (289)
Q Consensus 16 ~~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 95 (289)
.....+.+++++|++++++|.+ |+|+++|+++++++|+++++++|+++..++++.........+..++..+.....+
T Consensus 10 ~~~~~~~il~~~~~~i~~~D~~---g~i~~~N~a~~~l~g~~~~e~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (118)
T 3fg8_A 10 HSSGRENLYFQGGLGFMALDED---LRIIYVNSGCLRHVRRSRDELLGRVVTEVLPETQGSYFDALCRKVLATGREQQTR 86 (118)
T ss_dssp ---CCCCSSSCTTCEEEEECTT---CBEEEECHHHHHHHTCCHHHHTTSBHHHHCGGGTTSHHHHHHHHHHHHCCCEEEE
T ss_pred ccchHHHHHhhCCceEEEECCC---CeEEEECHHHHHHhCCCHHHHcCCcHHHHcCccchHHHHHHHHHHHHcCCceEEE
Confidence 3445567899999999999999 9999999999999999999999999877776555556666777888888877764
Q ss_pred EEEEecCCCEEEEEEEEEEeecCCCCcEEEEEEEEeccccc
Q 022983 96 LLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (289)
Q Consensus 96 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~ 136 (289)
+.....+| .|+.+...|+.+ | ++++++|||++
T Consensus 87 ~~~~~~~g--~~~~~~~~p~~~---g----~v~~~~DITer 118 (118)
T 3fg8_A 87 VDSLYSPG--MTIEVTAAADSG---A----LVVHFRDVTAE 118 (118)
T ss_dssp EECSSSTT--CEEEEEEEEETT---E----EEEEEEECSCC
T ss_pred EEEEcCCC--eEEEEEEEEcCC---c----EEEEEEeccCC
Confidence 33333355 467777888743 2 67889999985
No 48
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.40 E-value=7.6e-13 Score=112.43 Aligned_cols=107 Identities=8% Similarity=0.027 Sum_probs=87.3
Q ss_pred CEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCC-eEEEEEEEecCCCEEE
Q 022983 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP-IEVNLLNYKKDGTPFW 107 (289)
Q Consensus 29 ~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~g~~~~ 107 (289)
+.++..+.+ |+++|+|+++..++||++++++|+++..+++|++.+.....+...+..+.. ...++++++++|..+|
T Consensus 279 ~fi~~~~~d---g~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~~~~~~~~eyR~~~kdG~~vW 355 (387)
T 4f3l_B 279 EYVSRHAID---GKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSFIT 355 (387)
T ss_dssp EEEEEECTT---SBEEEECTHHHHHHCCCHHHHTTSBGGGTBCHHHHHHHHHHHHHHTTCSSCEECCCEEEECTTSCEEE
T ss_pred eEEEEECCC---CEEEEECCCcccccCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhcCCCeeeEEEEEEccCCCEEE
Confidence 355566777 999999999999999999999999988898888777666666666655544 4568999999999999
Q ss_pred EEEEEEEeecCCCCcEEEEEEEEecccccHH
Q 022983 108 MLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (289)
Q Consensus 108 ~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~ 138 (289)
+.....++.++.+|.+.+++++.+|||++|.
T Consensus 356 v~~~~~~~~~~~~g~~~~ivg~~~dIT~Rk~ 386 (387)
T 4f3l_B 356 LRSRWFSFMNPWTKEVEYIVSTNTVVLANVL 386 (387)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEECC----
T ss_pred EEEEEEEEECCCCCCEEEEEEEEEEcchhhc
Confidence 9999999988237899999999999999985
No 49
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=99.40 E-value=2.9e-12 Score=94.10 Aligned_cols=118 Identities=13% Similarity=0.124 Sum_probs=90.9
Q ss_pred HHHHHHHhhCCCEEEEEeCCCCCccEEEccHH---HHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCCeEE
Q 022983 18 LWVHEALDELPDSFTITDPSISGHPIVFASRG---FLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (289)
Q Consensus 18 ~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~---~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (289)
.++..++++++++++++|.+ |+|+|+|++ +++++| ..++++|+++..+.++. .......+...++.+.....
T Consensus 19 ~~l~~IL~~~~~gI~~vD~~---g~I~~~N~a~~~~~~i~g-~~~~~iGr~v~~~~~~~-~~~~v~~i~~~l~~g~~~~~ 93 (151)
T 2qkp_A 19 EQANLILNHLPLEITFVNKD---DIFQYYNDSVPAAEMVFK-RTPSQVGRNVELCHPPK-VLDKVKKVFELLRNGQRDKV 93 (151)
T ss_dssp HHHHHHHHHSSSEEEEEETT---SBEEEECCCSCGGGCSSC-CCGGGTTSBGGGSSCHH-HHHHHHHHHHHHHTTSBSEE
T ss_pred HHHHHHHHhCCCceEEEcCC---CeEEEEeCCCchhhhhcC-CCHHHcCCCHHHhCCHH-HHHHHHHHHHHHHcCCccEE
Confidence 56889999999999999999 999999999 999999 56789999987665422 22223445566677776655
Q ss_pred EEEEEecCCCEEEEEEEEEEeecCCCCcEEEEEEEEecccccHHHHhc
Q 022983 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142 (289)
Q Consensus 95 e~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~~e~~ 142 (289)
++.....+ ...++.++..|+.+ ++|.+.+++.+++|||+.++.+++
T Consensus 94 ~~~~~~~~-~~~~v~v~~~Pi~d-~~G~~~G~vev~~Dit~l~~le~~ 139 (151)
T 2qkp_A 94 NMWFQSER-LGKFVYVTYAAVRD-QAGDFQGVLEYVQDIKPFFELDSE 139 (151)
T ss_dssp EEEEEETT-TTEEEEEEEEEEEC-TTCCEEEEEEEEEECGGGGGGGGC
T ss_pred EEEEecCC-CCeEEEEEEEEEEC-CCCCEEEEEEEEEECHHHHhhhhh
Confidence 55543332 12456788999998 789999999999999999988655
No 50
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=99.38 E-value=3.3e-12 Score=105.88 Aligned_cols=47 Identities=11% Similarity=0.180 Sum_probs=39.8
Q ss_pred EEEEe-CCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHH
Q 022983 31 FTITD-PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80 (289)
Q Consensus 31 i~~~d-~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~ 80 (289)
+++++ .+ |+|+|+|+.+..++||++++++|+++..+.+|++...+..
T Consensus 6 ~~vv~~~~---G~i~yvS~~~~~~LGy~~~el~G~s~~d~ihp~D~~~f~~ 53 (339)
T 3rty_A 6 CCVISMHD---GIVLYTTPSITDVLGYPRDMWLGRSFIDFVHLKDRATFAS 53 (339)
T ss_dssp EEEEETTT---CBEEEECTTHHHHHCCCTTSSTTSBGGGGBCHHHHHHHHH
T ss_pred EEEEECCC---cEEEEEChHHHHHcCCCHHHHCCCcHHHhcCHHHHHHHHH
Confidence 45667 57 9999999999999999999999999988988776555443
No 51
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.36 E-value=9.5e-12 Score=105.68 Aligned_cols=62 Identities=16% Similarity=0.241 Sum_probs=52.5
Q ss_pred HHHHHHHhhCCCEEEEEeC-CCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHH
Q 022983 18 LWVHEALDELPDSFTITDP-SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82 (289)
Q Consensus 18 ~~l~~~~~~~~~~i~~~d~-~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~ 82 (289)
++...++++++..+++++. . |+|+|+|++++.++||++++++|+++..+++|++...+...+
T Consensus 86 ~~~~~ll~~~~gfi~v~~~~~---G~i~yvs~~~~~~lG~~~~el~g~~~~~~ihp~D~~~~~~~L 148 (387)
T 4f3l_B 86 ELKHLILRAADGFLFVVGCDR---GKILFVSESVFKILNYSQNDLIGQSLFDYLHPKDIAKVKEQL 148 (387)
T ss_dssp HHHHHHHHTCCSEEEEEETTT---CBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEEecCC---eEEEEEchhhHHHcCCCHHHHCCCcHHHhcCCCCHHHHHHHh
Confidence 3445678888888888886 5 999999999999999999999999999999998776655444
No 52
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.32 E-value=1.5e-11 Score=85.67 Aligned_cols=106 Identities=12% Similarity=0.122 Sum_probs=80.7
Q ss_pred HHHHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCCe-EEEEEE
Q 022983 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI-EVNLLN 98 (289)
Q Consensus 20 l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~ 98 (289)
...++++++++++++|.+ |+|+++|+++++++|++.++++|+++..+.++... ....+...+..+... ..+..+
T Consensus 9 ~~~il~~~~~~i~~~D~~---g~I~~~N~aa~~l~g~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 83 (115)
T 3b33_A 9 PSAILNNMVTATLILDDG---LAIRYANPAAELLFSQSAKRIVEQSLSQLIQHASL--DLALLTQPLQSGQSITDSDVTF 83 (115)
T ss_dssp HHHHHHHCSSEEEEECTT---CBEEEECHHHHHHTTSCHHHHTTCBHHHHCSEEEC--CTHHHHHHHHHCCCEEEEEEEE
T ss_pred HHHHHhhcCceEEEECCC---CcEEEECHHHHHHhCCCHHHHhCCCHHHHhCccch--hhHHHHHHHHcCCcccCCceEE
Confidence 456899999999999999 99999999999999999999999987666543211 112344555566553 345555
Q ss_pred EecCCCEEEEEEEEEEeecCCCCcEEEEEEEEeccc
Q 022983 99 YKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (289)
Q Consensus 99 ~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 134 (289)
. ++|..+|+.+++.|+.+ .|. .+++.+++||+
T Consensus 84 ~-~~g~~~~~~~~~~pi~~--~g~-~~~l~~~~Di~ 115 (115)
T 3b33_A 84 V-VDGRPLMLEVTVSPITW--QRQ-LMLLVEMRKID 115 (115)
T ss_dssp E-ETTEEEEEEEEEEEEEE--TTE-EEEEEEEEEC-
T ss_pred e-cCCCEEEEEEEEEEeec--CCc-eEEEEEEEeCC
Confidence 5 78999999999999975 454 57888899985
No 53
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=99.22 E-value=8.7e-12 Score=104.57 Aligned_cols=118 Identities=8% Similarity=0.075 Sum_probs=86.9
Q ss_pred HHHHHHHHHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCCeEE
Q 022983 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (289)
Q Consensus 15 ~~~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (289)
+++++++.++++++++++++|.+ |+|+++|+++++++||++++++|+++..+..+ ......+......+.....
T Consensus 5 ~~~~~~~~i~~~~~~~i~~~d~~---g~i~~~N~a~~~l~G~~~~e~~G~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 78 (349)
T 3a0r_A 5 HLRNFSESILESLETAIITLSKD---GRITEWNKKAEQLFGLKKENVLGRRLKDLPDF---EEIGSVAESVFENKEPVFL 78 (349)
T ss_dssp ----CCCSSGGGSSSEEEEEESS---SBCSCBCHHHHHHHSCCSTTTTTCBSTTSTTT---THHHHHHHHHHHHCCCCEE
T ss_pred HHHHHHHHHHhhhcCeEEEECCC---CCEEeeHHHHHHHhCCCHHHHcCcCHHHCcCh---hHHHHHHHHHHhcCCceee
Confidence 44456778999999999999999 99999999999999999999999998777322 2333344555555554433
Q ss_pred EEEEEecCCCEEEEEEEEEEeecCCCCcE-EEEEEEEecccccHHHHhcc
Q 022983 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRA-THFVAVQVPIVSRKHMRNSG 143 (289)
Q Consensus 95 e~~~~~~~g~~~~~~~~~~~~~~~~~g~~-~~~~~~~~DITe~k~~e~~l 143 (289)
.. ..+...|+.+...|+.+ ..|.. .+++++.+|||++|++|+++
T Consensus 79 ~~----~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~DiTe~~~~e~~~ 123 (349)
T 3a0r_A 79 NF----YKFGERYFNIRFSPFRN-AKTQLLEGVIITIDDVTELYKYEEER 123 (349)
T ss_dssp EC----CCBTTBCCEEEEEEECC-TTTTSSCEEEEEEECCSTTTTTTTTT
T ss_pred cc----cccCceEEEEEEEEEEc-CCCceeeEEEEEEEechHHHHHHHHH
Confidence 21 12233477888899987 56654 58899999999999987766
No 54
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=99.20 E-value=8.6e-11 Score=99.13 Aligned_cols=117 Identities=18% Similarity=0.267 Sum_probs=92.7
Q ss_pred HHHHHHHHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCCeEEE
Q 022983 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (289)
Q Consensus 16 ~~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 95 (289)
....+..+++++++||+++|.+ |+|+++|++ ++++ ++.++++|+++..+.++. .......+...+.++.....+
T Consensus 237 ~~~~l~~IL~~l~dgIivvD~~---g~I~~~N~a-e~i~-~~~~e~iGr~v~~~~p~~-~~~~~~~l~~~l~~g~~~~~~ 310 (369)
T 3cax_A 237 NIEELKAIFEALPVDVTFIDKD---DRVRFFSPG-ERIF-TRTPSVLGRPVQLCHPPK-SVYVVNKILKAFKEGRKKEAT 310 (369)
T ss_dssp CHHHHHHHHHHSSSEEEEECTT---SBEEEECCS-SCSS-CCCGGGTTCBTTTSSCGG-GHHHHHHHHHHHHHTSCSCEE
T ss_pred hHHHHHHHHHhCCCcEEEECCC---CcEEEEcCH-HHcc-CChHHHcCCcHHHHCChh-hHHHHHHHHHHHHcCCceEEE
Confidence 3457889999999999999999 999999999 9999 899999999988776532 223334456667777655444
Q ss_pred EEEEecCCCEEEEEEEEEEeecCCCCcEEEEEEEEecccccHHHHhc
Q 022983 96 LLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142 (289)
Q Consensus 96 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~~e~~ 142 (289)
.... .+| .++.++..|+.+ .+|.+.|++.+++|||+.++.+++
T Consensus 311 ~~~~-~~g--~~v~v~~~PI~d-~~G~~~G~v~v~~DITe~~~le~~ 353 (369)
T 3cax_A 311 FWLR-LRE--KYVYIKYVPLFN-EKGEYIGTLEMTMDIAPYKKIEGE 353 (369)
T ss_dssp EEEE-ETT--EEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHTCCSC
T ss_pred EEEe-eCC--EEEEEEEEEEEC-CCCCEEEEEEEEEcCHHHHHHHHH
Confidence 4433 355 477889999998 799999999999999999987544
No 55
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=99.17 E-value=2.6e-11 Score=84.37 Aligned_cols=103 Identities=16% Similarity=0.154 Sum_probs=73.3
Q ss_pred hCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHH-HHHh-CCCe---EEEEEEEe
Q 022983 26 ELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIRE-AIRE-ERPI---EVNLLNYK 100 (289)
Q Consensus 26 ~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~-~~~~-~~~~---~~e~~~~~ 100 (289)
+.+++++++|.+ +|+|+++|+++++++||++++++|+++..++++..... ...+.. .... +... ..+....+
T Consensus 6 ~~~~~i~~~d~~--~g~I~~~N~aa~~l~G~~~~el~g~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (114)
T 1ll8_A 6 EFNKAIFTVDAK--TTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDV-VEALSEEHMEADGHAAVVFGTVVDIIS 82 (114)
T ss_dssp TTTCEEEEEETT--TCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTTHH-HHHTTSSTTSSSSCSSCCCSSSEEECC
T ss_pred CCCceEEEEECC--CCeEEEehHHHHHHhCCCHHHHcCCCHHHhcCcchhHH-HHHHHHHhhccCCcceeccCcEEEEEe
Confidence 355799999963 28999999999999999999999999888877654332 222211 1111 1111 23456678
Q ss_pred cCCCEEEEEEEEEEeecCCCCcEEEEEEEEeccc
Q 022983 101 KDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (289)
Q Consensus 101 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 134 (289)
++|..+|+.+++.|+.+ ..+ ..++++++|++
T Consensus 83 ~dG~~~~v~~~~~~~~~-~~~--~~~v~~~~~~~ 113 (114)
T 1ll8_A 83 RSGEKIPVSVWMKRMRQ-ERR--LCCVVVLEPVE 113 (114)
T ss_dssp TTCCCEEEECCEECCBS-SSS--BEEEEEEEECC
T ss_pred cCCCEEEEEEEEEeecc-CCc--cEEEEEEeecC
Confidence 99999999999999986 333 35778888875
No 56
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=99.16 E-value=1.7e-10 Score=95.67 Aligned_cols=108 Identities=9% Similarity=0.037 Sum_probs=91.1
Q ss_pred CCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCC-----eEEEEEEEecC
Q 022983 28 PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP-----IEVNLLNYKKD 102 (289)
Q Consensus 28 ~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~e~~~~~~~ 102 (289)
.+.++..+.+ |.++|+|+++..++||++++++|+++..+++|++.+.....+...+..|.. ...++++++++
T Consensus 154 ~~fi~r~~~d---G~~~yvn~~~~~lLGY~peELiG~s~~~~vHPdD~~~~~~~~~~~l~~G~~~~~~~~s~~yR~~~kd 230 (339)
T 3rty_A 154 PKFAIRHTAT---GIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQN 230 (339)
T ss_dssp CEEEEEEETT---CBEEEECTTHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHTTSTTCCCBCCCEEEECTT
T ss_pred ceEEEEECCC---CeEEEcChhhhcccCCCHHHHcCCcHHHEECHHHHHHHHHHHHHHHHcCCcccccccceEEEEEccC
Confidence 4567777888 999999999999999999999999999999998887777777777776654 34688999999
Q ss_pred CCEEEEEEEEEEeecCCCCcEEEEEEEEecccccHH
Q 022983 103 GTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (289)
Q Consensus 103 g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~ 138 (289)
|..+|++....++.+|.++.+..++++.+.|+....
T Consensus 231 G~~vWlet~~~~~~np~s~~~~~II~~h~vi~~p~~ 266 (339)
T 3rty_A 231 GCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGPKQ 266 (339)
T ss_dssp SCEEEEEEEEEEEECTTTCSEEEEEEEEEEEECCSS
T ss_pred CCEEEEEEEEEEEECCCCCCeeEEEEEEEECCCCCC
Confidence 999999999999987445677788888888886553
No 57
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=99.13 E-value=2.7e-11 Score=84.27 Aligned_cols=104 Identities=9% Similarity=0.083 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCC---CccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCC
Q 022983 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGF---SRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP 91 (289)
Q Consensus 15 ~~~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~---~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (289)
+..+.++.++++++++++++|.+ |+|+++|+++++++|| +.++++|+++..+.++.. +...+..+..
T Consensus 12 ~~~~~~~~il~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~ 81 (118)
T 2w0n_A 12 TLFEQRQAMLQSIKEGVVAVDDR---GEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQVVD-------VSEVLRDGTP 81 (118)
T ss_dssp TTHHHHHHHHHCCCCCCEEEBTT---TBCCCBCHHHHHHHCSCTTTTTSSCCCTTCCCSCTHH-------HHHHHHTTCC
T ss_pred HHHHHHHHHHhhccccEEEECCC---CcEeehhHHHHHHhCCCccChhhhhccCcccccCchh-------HHHHhccCce
Confidence 45567889999999999999999 9999999999999997 789999998877764421 3444444443
Q ss_pred eEEEEEEEecCCCEEEEEEEEEEeecCCCCcEEEEEEEEeccc
Q 022983 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (289)
Q Consensus 92 ~~~e~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 134 (289)
..... ...+| .|+.+...|+.+ .|...+++++.+|||
T Consensus 82 ~~~~~--~~~~~--~~~~~~~~p~~~--~g~~~g~v~~~~DiT 118 (118)
T 2w0n_A 82 RRDEE--ITIKD--RLLLINTVPVRS--NGVIIGAISTFRDKT 118 (118)
T ss_dssp CCCCC--EESSS--CEECCCEECCCC--SSCCCCEEECCCCCC
T ss_pred eccEE--EEECC--EEEEEeeceeee--CCEEEEEEEEEEeCC
Confidence 22111 12345 366778888875 677778889999997
No 58
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=99.13 E-value=1.5e-09 Score=71.77 Aligned_cols=95 Identities=8% Similarity=0.076 Sum_probs=70.5
Q ss_pred CCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCCeEEEEEEEecCCCEE
Q 022983 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPF 106 (289)
Q Consensus 27 ~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~ 106 (289)
++++++++|.+ |+++++|+++++++|++.++++|++...+ +. .......+...+..+..+... . .++...
T Consensus 1 ~~~~i~~~d~~---g~i~~~N~~~~~l~g~~~~~~~g~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~ 70 (96)
T 3a0s_A 1 METAIITLSKD---GRITEWNKKAEQLFGLKKENVLGRRLKDL--PD-FEEIGSVAESVFENKEPVFLN--F--YKFGER 70 (96)
T ss_dssp CCCEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGGGS--TT-CHHHHHHHHHHHHHTCCEEEE--E--EEETTE
T ss_pred CCceEEEEcCC---CCEeehhHHHHHHhCCCHHHhcCCCHHHC--cc-hHHHHHHHHHHhccCCeEEEE--E--EcCCcE
Confidence 47899999999 99999999999999999999999987766 22 234444555566666655332 2 234446
Q ss_pred EEEEEEEEeecCCCCc-EEEEEEEEec
Q 022983 107 WMLFKMSLVFGKEDGR-ATHFVAVQVP 132 (289)
Q Consensus 107 ~~~~~~~~~~~~~~g~-~~~~~~~~~D 132 (289)
|+.+...|+.+ .+|. +.+++++.+|
T Consensus 71 ~~~~~~~p~~~-~~~~~~~g~v~~~~D 96 (96)
T 3a0s_A 71 YFNIRFSPFRN-AKTQLLEGVIITIDD 96 (96)
T ss_dssp EEEEEEEEEEC-TTTCCEEEEEEEEEC
T ss_pred EEEEEEEEeEc-CCCCeeeEEEEEecC
Confidence 88899999987 5554 5688888776
No 59
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=99.09 E-value=2.7e-09 Score=74.43 Aligned_cols=99 Identities=14% Similarity=0.085 Sum_probs=74.3
Q ss_pred HHHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCc-cCCCCCHHHHHHHHHHHHhCCCeEEEE-EE
Q 022983 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMF-QGPRTNRRTIMEIREAIREERPIEVNL-LN 98 (289)
Q Consensus 21 ~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~ 98 (289)
..++++++.|++++|.+ |+|++||.+++++.||++++++|+++... .+......+...+.+.+..+. +.... ..
T Consensus 20 ~~~ld~l~~Gii~lD~~---g~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~~~~~~~f~~rf~~~~~~g~-l~~~~~~v 95 (125)
T 1nwz_A 20 DGQLDGLAFGAIQLDGD---GNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGN-LNTMFEYT 95 (125)
T ss_dssp HHHHTTCSSEEEEEETT---CBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHTC-CEEEEEEE
T ss_pred HHHHhccCceEEEECCC---CEEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCc-eeEEEEEE
Confidence 45799999999999999 99999999999999999999999997654 333455566777788777766 44333 34
Q ss_pred EecCCCEEEEEEEEEEeecCCCCcEEEE
Q 022983 99 YKKDGTPFWMLFKMSLVFGKEDGRATHF 126 (289)
Q Consensus 99 ~~~~g~~~~~~~~~~~~~~~~~g~~~~~ 126 (289)
.+.+|.++++.++.. .. .+|...++
T Consensus 96 ~~~~~~p~~v~i~l~--~~-~~~~~~~i 120 (125)
T 1nwz_A 96 FDYQMTPTKVKVHMK--KA-LSGDSYWV 120 (125)
T ss_dssp ECTTSCCEEEEEEEE--EC-SSSSEEEE
T ss_pred EcCCCCEEEEEEEEE--Ec-CCCCEEEE
Confidence 588898666555544 44 46655443
No 60
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=99.07 E-value=4e-09 Score=73.71 Aligned_cols=98 Identities=14% Similarity=0.082 Sum_probs=73.2
Q ss_pred HHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCc-cCCCCCHHHHHHHHHHHHhCCCeEEEE-EEE
Q 022983 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMF-QGPRTNRRTIMEIREAIREERPIEVNL-LNY 99 (289)
Q Consensus 22 ~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~~ 99 (289)
.++++++.|++++|.+ |+|++||.+++++.||++++++|+++... .+......+...+.+.+..+. +.... ...
T Consensus 26 ~~ld~l~~GiivlD~d---g~I~~~N~~~e~isG~s~eeviGk~~f~~~~p~~~~~~f~grf~~~~~~G~-l~~~~~yv~ 101 (129)
T 1mzu_A 26 AEFDALPVGAIQVDGS---GVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCTNIPAFSGRFMDGVTSGT-LDARFDFVF 101 (129)
T ss_dssp TTGGGCSSEEEEEETT---CBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHTSC-CEEEEEEEE
T ss_pred HHHhccCceEEEECCC---CeEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCc-eeEEEEEEE
Confidence 4699999999999999 99999999999999999999999997654 333455566777788877666 44333 344
Q ss_pred ecCCCEEEEEEEEEEeecCCCCcEEEE
Q 022983 100 KKDGTPFWMLFKMSLVFGKEDGRATHF 126 (289)
Q Consensus 100 ~~~g~~~~~~~~~~~~~~~~~g~~~~~ 126 (289)
+.+|.++++.++ +... .+|...++
T Consensus 102 ~~~~~p~~v~i~--l~~~-~~~~~~~i 125 (129)
T 1mzu_A 102 DFQMAPVRVQIR--MQNA-GVPDRYWI 125 (129)
T ss_dssp ECSSCEEEEEEE--EEEC-SSTTEEEE
T ss_pred cCCCCEEEEEEE--EEEc-CCCCEEEE
Confidence 888886665555 4444 46665443
No 61
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=99.05 E-value=2.8e-10 Score=86.79 Aligned_cols=107 Identities=14% Similarity=0.162 Sum_probs=78.8
Q ss_pred HHHHHHHHHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCC--Ce
Q 022983 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER--PI 92 (289)
Q Consensus 15 ~~~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~ 92 (289)
+....++.+++++++|++++|.+ |+|+++|+++++++|++.++++|+++..+.++.. +...+..+. ..
T Consensus 77 ~~~~~l~~il~~~~~gvi~~D~~---g~I~~~N~aa~~llg~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~~~~ 146 (190)
T 2jhe_A 77 REHLALSALLEALPEPVLSVDMK---SKVDMANPASCQLFGQKLDRLRNHTAAQLINGFN-------FLRWLESEPQDSH 146 (190)
T ss_dssp HHHHHHHHHHHHCSSCEEEECTT---CBEEEECHHHHHHHTSCHHHHTTSBGGGTSTTCC-------HHHHHHTCCCSCE
T ss_pred HHHHHHHHHHHhCCCcEEEEcCC---CCEEEEcHHHHHHhCCCHHHhcCccHHHHhCCCC-------HHHHHhcCCCCCc
Confidence 45567899999999999999999 9999999999999999999999999887765432 122333333 23
Q ss_pred EEEEEEEecCCCEEEEEEEEEEeecCCCCc----EEEEEEEEecccccH
Q 022983 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGR----ATHFVAVQVPIVSRK 137 (289)
Q Consensus 93 ~~e~~~~~~~g~~~~~~~~~~~~~~~~~g~----~~~~~~~~~DITe~k 137 (289)
..++.. +|.. +.+...|+.+ .+|. +.+++.+.+|||+.+
T Consensus 147 ~~~~~~---~g~~--~~~~~~pi~~-~~~~~~~~~~g~v~~~~DiTe~~ 189 (190)
T 2jhe_A 147 NEHVVI---NGQN--FLMEITPVYL-QDENDQHVLTGAVVMLRSTIRMG 189 (190)
T ss_dssp EEEEEE---TTEE--EEEEEEEETT-TTEEEEEEEE-HHHHHHHHTTTC
T ss_pred ceEEEE---CCeE--EEEEEEEEEe-cCCCCcceEEeEEEEEeccchhc
Confidence 333322 6643 5577888875 4554 677778889999876
No 62
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=99.00 E-value=3.9e-09 Score=86.62 Aligned_cols=105 Identities=9% Similarity=0.044 Sum_probs=85.5
Q ss_pred CEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCC---eEEEEEEEecCCCE
Q 022983 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP---IEVNLLNYKKDGTP 105 (289)
Q Consensus 29 ~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~e~~~~~~~g~~ 105 (289)
.-+...+.+ |+++|+|+++..++||.+++++|+++..+++|++.......+...+..+.. ...+++++++||..
T Consensus 175 ~Fitrh~~d---G~~~yvs~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~~~~~f~s~~yR~~~kdG~~ 251 (317)
T 4dj3_A 175 IFTTTHTPG---CVFLEVDERAVPLLGYLPQDLIGTSILTYLHPEDRPLMVAIHQKVLKYAGHPPFEHSPVRFCTQNGEY 251 (317)
T ss_dssp EEEEEECTT---SBEEEECTTHHHHHSCCHHHHTTSBGGGGBCTTTTTHHHHHHHHHHHTTTSCCEECCCEEEECTTSCE
T ss_pred ceEEEecCC---CeEEEEChHHhhhcCcChHHHcCCCHHHeECHHHHHHHHHHHHHHHHcCCCccccceEEEEEccCCCE
Confidence 345555677 999999999999999999999999999999999988887777777776554 34689999999999
Q ss_pred EEEEEEEEEeecCCCCcEEEEEEEEeccccc
Q 022983 106 FWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (289)
Q Consensus 106 ~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~ 136 (289)
+|++....++.+|.++.+..+++...-++..
T Consensus 252 vwvet~~~~~~np~s~~~e~II~~h~v~~~p 282 (317)
T 4dj3_A 252 VILDSSWSSFVNPWSRKVSFIIGRHKVRTSP 282 (317)
T ss_dssp EEEEEEEEEEECSSSCCEEEEEEEEEECCCC
T ss_pred EEEEEEEEEEECCCCCcccEEEEEEEeccCC
Confidence 9999999999873456676777766655544
No 63
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=98.98 E-value=2.5e-09 Score=87.86 Aligned_cols=55 Identities=13% Similarity=-0.032 Sum_probs=45.1
Q ss_pred HhhCCCEEEEEeC-CCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHH
Q 022983 24 LDELPDSFTITDP-SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81 (289)
Q Consensus 24 ~~~~~~~i~~~d~-~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~ 81 (289)
++++..-++++.. + |+|+|+|+.+..++||++++++|+++.++++|+|...+...
T Consensus 32 LqaldGF~~vvs~~~---G~i~yvS~sv~~~Lg~~~~~l~g~s~~d~iHp~D~~~f~~q 87 (320)
T 4dj2_A 32 LRNQDTFSVAVSFLT---GRIVYISEQAGVLLRCKRDVFRGARFSELLAPQDVGVFYGS 87 (320)
T ss_dssp TSCSSEEEEEEETTT---CBEEEECTHHHHHHTSCSTTTTTSBGGGGBCHHHHHHHHHH
T ss_pred HhccCCEEEEEECCC---ceEEEECcHHHHHhCcCHHHHcCCcHHHhcCHHHHHHHHHh
Confidence 6666555666775 6 99999999999999999999999999999988776655543
No 64
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=98.94 E-value=8e-10 Score=77.23 Aligned_cols=42 Identities=7% Similarity=-0.001 Sum_probs=40.1
Q ss_pred HHHHhhcccccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhc
Q 022983 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITR 287 (289)
Q Consensus 243 ~~~~~e~~~~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~ 287 (289)
+...++.++++|+++|. +|+|++||++|++++||+++|++|+
T Consensus 13 ~~~l~e~~~d~i~~~d~---~g~i~~vN~a~~~l~Gy~~~el~g~ 54 (117)
T 2r78_A 13 YRALFEHAIDGIFIMDA---EGHYLDVNPAICSAIGYTRDEFLAL 54 (117)
T ss_dssp HHHHHHHCSSEEEEECT---TSBEEEECHHHHHHHCCCHHHHTTC
T ss_pred HHHHHhcCCceEEEECC---CCCEEEecHHHHHHHCcCHHHHcCC
Confidence 66789999999999999 9999999999999999999999997
No 65
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=98.92 E-value=8.5e-09 Score=84.35 Aligned_cols=105 Identities=8% Similarity=0.030 Sum_probs=85.9
Q ss_pred EEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCC-eE-EEEEEEecCCCEEE
Q 022983 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP-IE-VNLLNYKKDGTPFW 107 (289)
Q Consensus 30 ~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~-~e~~~~~~~g~~~~ 107 (289)
.+...+.+ |+++|+|+++..++||.+++++|+++..+++|++.......+...+..+.. .. .++++++++|..+|
T Consensus 167 Fitrh~~d---G~~~yvd~~~~~lLGY~peELig~s~~~~iHpdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vw 243 (309)
T 3gdi_A 167 FTTTHTPN---CLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQAGGQPFDYSPIRFRTRNGEYIT 243 (309)
T ss_dssp EEEEECTT---CBEEEECTTHHHHHSCCHHHHTTSBHHHHBCTTSHHHHHHHHHHHHHTTTCCEEEEEEEEECTTSCEEE
T ss_pred EEEEecCC---CeEEEECcccccccCcCHHHHcCCCHHHhCCHHHHHHHHHHHHHHHhcCCceeeceEEEEEccCCCEEE
Confidence 45556677 999999999999999999999999988899998877777777777765543 54 58999999999999
Q ss_pred EEEEEEEeecCCCCcEEEEEEEEecccccH
Q 022983 108 MLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137 (289)
Q Consensus 108 ~~~~~~~~~~~~~g~~~~~~~~~~DITe~k 137 (289)
++....++.+|.++.+..+++.-+-++...
T Consensus 244 vet~~~~~~np~s~~~e~ii~~h~v~~gp~ 273 (309)
T 3gdi_A 244 LDTSWSSFINPWSRKISFIIGRHKVRVGPL 273 (309)
T ss_dssp EEEEEEEEECTTTCCEEEEEEEEEEEECCS
T ss_pred EEEEEEEEECCCCCcccEEEEEEEEccCCC
Confidence 999999888634677878888877776543
No 66
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=98.91 E-value=3.7e-09 Score=86.44 Aligned_cols=58 Identities=7% Similarity=-0.062 Sum_probs=38.9
Q ss_pred HHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHH
Q 022983 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82 (289)
Q Consensus 23 ~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~ 82 (289)
+++++..-+++++.+ +|+|+|+|+++..++||++++++|+++..+.+|+|...+...+
T Consensus 20 ll~a~dgF~~vvs~~--~G~i~yvS~s~~~~Lg~~~~el~g~s~~d~iHp~D~~~~~~~L 77 (309)
T 3gdi_A 20 IVKNADMFAVAVSLV--SGKILYISNQVASIFHCKKDAFSDAKFVEFLAPHDVSVFHSYT 77 (309)
T ss_dssp ---CTTEEEEEECTT--TCBEEEECTTTTTTC-------CCSBGGGGBCTTTHHHHHHHT
T ss_pred HHHhcCCEEEEEECC--CceEEEECCHHHHHcCCCHHHHcCCchhhccCHhHHHHHHHhc
Confidence 566666666777752 2999999999999999999999999999999998876665543
No 67
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=98.90 E-value=1.2e-09 Score=76.56 Aligned_cols=43 Identities=16% Similarity=0.218 Sum_probs=40.5
Q ss_pred HHHHhhcccccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhcc
Q 022983 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITRI 288 (289)
Q Consensus 243 ~~~~~e~~~~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~~ 288 (289)
+..+++.++++|+++|. +|+|+++|++|++++||+.+|++|+.
T Consensus 7 ~~~~~~~~~~~i~~~d~---~g~i~~~N~a~~~~~G~~~~elig~~ 49 (120)
T 2gj3_A 7 FRQTVEHAPIAISITDL---KANILYANRAFRTITGYGSEEVLGKN 49 (120)
T ss_dssp HHHHHHHCSSEEEEECT---TCBEEEECHHHHHHHCCCTTGGGGCB
T ss_pred HHHHHHhCCCeEEEECC---CCCEEeehHHHHHHHCcCHHHHcCCC
Confidence 66789999999999999 99999999999999999999999973
No 68
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=98.90 E-value=1.6e-08 Score=83.00 Aligned_cols=57 Identities=11% Similarity=-0.057 Sum_probs=47.6
Q ss_pred HHhhCCCEEEEEeC-CCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHH
Q 022983 23 ALDELPDSFTITDP-SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82 (289)
Q Consensus 23 ~~~~~~~~i~~~d~-~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~ 82 (289)
+++++..-+++++. + |+|+|+|+++..++||++++++|+++.++++|.|...+...+
T Consensus 31 ~L~aldgF~~vvs~~~---G~i~yvS~~~~~~Lg~~~~el~g~s~~d~ihp~D~~~f~~ql 88 (317)
T 4dj3_A 31 TSKNTDTFAAVFSFLS---GRLVHISEQAALILNSKRGFLKSVHFVDLLAPQDVRAFYAHT 88 (317)
T ss_dssp HTSCTTEEEEEEETTT---CBEEEECTTHHHHTTCCHHHHHTSBGGGGBCGGGHHHHHHHT
T ss_pred HHhccCCEEEEEEcCC---cEEEEECCHHHHHcCCCHHHHcCCchhhhcChhhHHHHHHhh
Confidence 46666666677775 5 999999999999999999999999999999998877665543
No 69
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=98.90 E-value=1.2e-09 Score=75.30 Aligned_cols=39 Identities=36% Similarity=0.641 Sum_probs=35.2
Q ss_pred ccccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhcc
Q 022983 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITRI 288 (289)
Q Consensus 250 ~~~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~~ 288 (289)
++++|+|+|+..++++|+++|++|+++|||+.+|++|+.
T Consensus 2 ~~~~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~ 40 (109)
T 1n9l_A 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHN 40 (109)
T ss_dssp CSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSC
T ss_pred CccEEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCC
Confidence 468999999755689999999999999999999999973
No 70
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=98.88 E-value=6.8e-09 Score=85.28 Aligned_cols=106 Identities=9% Similarity=0.043 Sum_probs=85.4
Q ss_pred CEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhC-CCe-EEEEEEEecCCCEE
Q 022983 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE-RPI-EVNLLNYKKDGTPF 106 (289)
Q Consensus 29 ~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~-~~e~~~~~~~g~~~ 106 (289)
..+...+.+ |+++|+|+++..++||.++|++|+++..+++|++.......+...+..+ ... ..++++++++|..+
T Consensus 177 ~Fitrh~~d---G~~~yvd~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~v 253 (320)
T 4dj2_A 177 IFTTRHTPS---CLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRFCARNGEYV 253 (320)
T ss_dssp EEEEEECTT---CBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHTTSSSCCEECCCEEEECSSSCEE
T ss_pred eEEEEecCC---ceEEEcCcceeccCCcChHHHcCCcHHHhCCHHHHHHHHHHHHHHHhcCCCcccceEEEEEccCCCEE
Confidence 345556777 9999999999999999999999999999999988776666666666643 344 35899999999999
Q ss_pred EEEEEEEEeecCCCCcEEEEEEEEecccccH
Q 022983 107 WMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137 (289)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k 137 (289)
|++....++.+|-++.+..+++.-.-++...
T Consensus 254 wvet~~~~~~np~s~~~e~II~~h~v~~gp~ 284 (320)
T 4dj2_A 254 TMDTSWAGFVHPWSRKVAFVLGRHKVRTAPL 284 (320)
T ss_dssp EEECEEEEEECTTTCSEEEEEEEEEESSCCS
T ss_pred EEEEEEEEEECCCCCCccEEEEEEEEccCCC
Confidence 9999999988744677888888877777644
No 71
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=98.83 E-value=3.2e-09 Score=75.49 Aligned_cols=43 Identities=19% Similarity=0.078 Sum_probs=40.5
Q ss_pred HHHHhhcccccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhcc
Q 022983 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITRI 288 (289)
Q Consensus 243 ~~~~~e~~~~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~~ 288 (289)
+...++.++++|+++|. +|+|+++|++|++++||+.+|++|+.
T Consensus 18 ~~~l~~~~~d~i~~~d~---~g~i~~~N~a~~~l~Gy~~~eliG~~ 60 (130)
T 1d06_A 18 LRSILDTVPDATVVSAT---DGTIVSFNAAAVRQFGYAEEEVIGQN 60 (130)
T ss_dssp HHHHHTTCSSEEEEEET---TSBEEEECHHHHHHHCCCHHHHTTSB
T ss_pred HHHHHhhCcCeEEEECC---CCeEEEEcHHHHHHHCCCHHHHcCCc
Confidence 66789999999999999 99999999999999999999999973
No 72
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=98.76 E-value=6.2e-09 Score=73.27 Aligned_cols=41 Identities=12% Similarity=0.066 Sum_probs=37.6
Q ss_pred HHHHhhcccccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhh
Q 022983 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKIT 286 (289)
Q Consensus 243 ~~~~~e~~~~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G 286 (289)
+...++.++++|+++|. +|+|+++|++|++++||+.+|++|
T Consensus 19 ~~~l~e~~~~~i~~~d~---~g~i~~~N~a~~~~~G~~~~el~g 59 (126)
T 3bwl_A 19 LEALFENSPDMIDVLDA---DGTICEVNQRFCAELGYDESEVLG 59 (126)
T ss_dssp HHHHHHHCSSEEEEECT---TCBEEEECHHHHHHHTCCGGGTTT
T ss_pred HHHHHhhCCcEEEEEcC---CCCEEEEcHHHHHHhCCCHHHHhh
Confidence 55678999999999999 999999999999999999999953
No 73
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=98.75 E-value=8.8e-09 Score=73.36 Aligned_cols=43 Identities=5% Similarity=0.081 Sum_probs=40.7
Q ss_pred HHHHhhcccccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhcc
Q 022983 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITRI 288 (289)
Q Consensus 243 ~~~~~e~~~~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~~ 288 (289)
+...++.++++|+++|. +|+|+++|+++++++||+++|++|+-
T Consensus 9 l~~i~~~~~d~i~~~D~---~g~I~~~N~aa~~l~G~~~~el~G~~ 51 (129)
T 3mfx_A 9 IELFIQHLTEAMILVNA---NGFIRSCNQRSAELLDCPQVSLKGQD 51 (129)
T ss_dssp HHHHHTTCSSEEEEEET---TSBEEEECHHHHHHTTSCHHHHTTSB
T ss_pred HHHHHhcCCceEEEECC---CCEEEeEhHHHHHHHCcCHHHHcCCc
Confidence 67789999999999999 99999999999999999999999973
No 74
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=98.73 E-value=8.8e-09 Score=73.35 Aligned_cols=44 Identities=27% Similarity=0.526 Sum_probs=35.8
Q ss_pred HHhhcccccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhcc
Q 022983 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITRI 288 (289)
Q Consensus 245 ~~~e~~~~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~~ 288 (289)
..++.++++|+++|...++++|+++|++|++++||+.+|++|+.
T Consensus 3 ~~~~~~~~~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~ 46 (132)
T 2pr5_A 3 HMLDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKN 46 (132)
T ss_dssp ---CCCCCEEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSC
T ss_pred hHHhcCCCcEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCC
Confidence 46788999999999822234999999999999999999999973
No 75
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=98.63 E-value=3.5e-08 Score=68.19 Aligned_cols=43 Identities=9% Similarity=0.070 Sum_probs=39.5
Q ss_pred HHHHhhcccccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhcc
Q 022983 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITRI 288 (289)
Q Consensus 243 ~~~~~e~~~~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~~ 288 (289)
+...++.++++|++.|. +|+|+++|++|++++||+++|++|+.
T Consensus 15 ~~~~~~~~~~~i~~~d~---~g~i~~~N~~~~~l~G~~~~el~g~~ 57 (118)
T 3olo_A 15 AHYLINNAVEASFCLGD---NWQFLYVNDATCRMTEYSREQLLSMN 57 (118)
T ss_dssp HHHHHHHCSSEEEEECT---TSBEEEECHHHHHHHCCCHHHHTTCB
T ss_pred HHHHHhcCCceEEEECC---CCcEEEEHHHHHHHHCCCHHHHhCCC
Confidence 45678999999999999 99999999999999999999999973
No 76
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=97.97 E-value=7.9e-09 Score=84.69 Aligned_cols=111 Identities=14% Similarity=0.108 Sum_probs=75.9
Q ss_pred HHhhCCCEEEEEeCCCCCccEEEccHHHHHHhC---CCccccCCCCCCCccCCC---CCH--HHHHHHHHHHHh-CCCeE
Q 022983 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSG---FSRAEIIGRNGRMFQGPR---TNR--RTIMEIREAIRE-ERPIE 93 (289)
Q Consensus 23 ~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G---~~~~e~~g~~~~~l~~~~---~~~--~~~~~~~~~~~~-~~~~~ 93 (289)
+++++++|++++|.+ |+|+++|++++++++ ++ ++++|+++..+.+.. ... .+...+...+.. +....
T Consensus 175 ~~~~~~dGIivvD~~---G~Ii~~N~aA~~ll~~lG~~-~~~iGk~l~el~~~~~~~~~~~~~~~~~l~~vl~~~~~~~~ 250 (305)
T 2ykf_A 175 SSPRAGDGFIRLDVD---GVVSYASPNALSAYHRMGLT-TELEGVNLIDATRPLISDPFEAHEVDEHVQDLLAGDGKGMR 250 (305)
Confidence 356899999999999 999999999999985 44 688999877776432 100 111222223332 22222
Q ss_pred EEEEEEecCCCEEEEEEEEEEeecCCCCcEEEEEEEEecccccHHHHhccc
Q 022983 94 VNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGM 144 (289)
Q Consensus 94 ~e~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~~e~~l~ 144 (289)
.+.. .+| .++.++..|+.+ .|.+.+++.+++|||+.++.|++|.
T Consensus 251 ~ei~---~~~--~~l~v~~~Pi~~--~g~~~G~Vvv~rDITE~~~lE~eL~ 294 (305)
T 2ykf_A 251 MEVD---AGG--ATVLLRTLPLVV--AGRNVGAAILIRDVTEVKRRDRALI 294 (305)
Confidence 2221 122 456677889876 5777888999999999999988874
No 77
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=98.55 E-value=5.1e-08 Score=71.36 Aligned_cols=43 Identities=14% Similarity=0.040 Sum_probs=40.4
Q ss_pred HHHHhhcccccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhcc
Q 022983 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITRI 288 (289)
Q Consensus 243 ~~~~~e~~~~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~~ 288 (289)
+..+++.+++||+++|. +|+|+++|+++++++||+++|++||.
T Consensus 24 l~~il~~~~~gi~v~D~---~g~I~~~N~a~~~~~G~~~~eviG~~ 66 (152)
T 3mxq_A 24 LSELLDQLSFALCIVRN---DYVIVKVNEYFESRVIFDGETMQGKN 66 (152)
T ss_dssp HHHHHHHHCCEEEEEET---TSBEEEECHHHHHTSSSCHHHHTTSB
T ss_pred HHHHHhcCCCCEEEEcC---CCEEEEECHHHHHHHCcCHHHHCCCC
Confidence 56788999999999999 99999999999999999999999984
No 78
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=98.54 E-value=5.1e-08 Score=67.36 Aligned_cols=40 Identities=13% Similarity=0.042 Sum_probs=33.4
Q ss_pred HhhcccccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhcc
Q 022983 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITRI 288 (289)
Q Consensus 246 ~~e~~~~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~~ 288 (289)
.++.++++|++.|. +|+|+|+|+++++++||+++|++|+-
T Consensus 4 lle~~~d~i~v~d~---~G~i~yvn~~~~~~lGy~~~el~G~~ 43 (111)
T 2vlg_A 4 PLQTKTDIHAVLAS---NGRIIYISANSKLHLGYLQGEMIGSF 43 (111)
T ss_dssp -----CCEEEEECT---TSBEEEECTTHHHHHSCCHHHHTTSB
T ss_pred hhhcCCCEEEEEcC---CCeEEEEChHHHHHhCCCHHHHcCCc
Confidence 56788899999999 99999999999999999999999973
No 79
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=98.53 E-value=3.9e-08 Score=67.94 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=33.2
Q ss_pred ccccEEEeCCCCCC-CCEEEecHHHHHhhCCChHhHhhcc
Q 022983 250 IKQSFVLIDPHLPD-MPMVYASDAFLKLTGAQIFTKITRI 288 (289)
Q Consensus 250 ~~~~i~i~d~~~~~-~~i~~vN~~f~~~tGys~~E~~G~~ 288 (289)
..++|+++|. + |+|+++|+++++++||+++|++|+-
T Consensus 7 ~~~~i~~~d~---~~g~I~~~N~aa~~l~G~~~~el~g~~ 43 (114)
T 1ll8_A 7 FNKAIFTVDA---KTTEILVANDKACGLLGYSSQDLIGQK 43 (114)
T ss_dssp TTCEEEEEET---TTCBEEEECTTHHHHHTCCTTTTTTSB
T ss_pred CCceEEEEEC---CCCeEEEehHHHHHHhCCCHHHHcCCC
Confidence 4579999999 9 9999999999999999999999973
No 80
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=98.50 E-value=1.2e-07 Score=66.21 Aligned_cols=42 Identities=17% Similarity=0.039 Sum_probs=39.0
Q ss_pred HHHhhcccccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhcc
Q 022983 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITRI 288 (289)
Q Consensus 244 ~~~~e~~~~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~~ 288 (289)
...++.++.|+++.|. +++|+++|++.++++||+++|++||.
T Consensus 20 ~~~ld~l~~Gii~lD~---~g~I~~~N~~~e~~sG~~~~eviGk~ 61 (125)
T 1nwz_A 20 DGQLDGLAFGAIQLDG---DGNILQYNAAEGDITGRDPKQVIGKN 61 (125)
T ss_dssp HHHHTTCSSEEEEEET---TCBEEEECHHHHHHHCCCHHHHTTSB
T ss_pred HHHHhccCceEEEECC---CCEEEEEHHHHHHHhCCCHHHHcCCc
Confidence 3468899999999999 99999999999999999999999984
No 81
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=98.48 E-value=1.2e-07 Score=66.21 Aligned_cols=40 Identities=13% Similarity=0.034 Sum_probs=38.1
Q ss_pred HhhcccccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhcc
Q 022983 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITRI 288 (289)
Q Consensus 246 ~~e~~~~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~~ 288 (289)
.++.++.||++.|. +++|+++|++.++++||+++|++||.
T Consensus 27 ~ld~l~~GiivlD~---dg~I~~~N~~~e~isG~s~eeviGk~ 66 (129)
T 1mzu_A 27 EFDALPVGAIQVDG---SGVIHRYNRTESRLSGRIPERVIGRN 66 (129)
T ss_dssp TGGGCSSEEEEEET---TCBEEEECHHHHHHHCCCHHHHTTSB
T ss_pred HHhccCceEEEECC---CCeEEEEHHHHHHHhCCCHHHHcCCc
Confidence 58889999999999 99999999999999999999999984
No 82
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=98.47 E-value=9.1e-08 Score=66.66 Aligned_cols=42 Identities=14% Similarity=0.060 Sum_probs=37.8
Q ss_pred HHHHhhcccccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhcc
Q 022983 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITRI 288 (289)
Q Consensus 243 ~~~~~e~~~~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~~ 288 (289)
+..+++.++++|++ |. +|+|+++|++|++++||+.+|++|+.
T Consensus 5 ~~~~~~~~~~~i~~-~~---~g~i~~~N~a~~~l~G~~~~el~g~~ 46 (120)
T 3mqq_A 5 YKTAFHLAPIGLVL-SR---DRVIEDCNDELAAIFRCARADLIGRS 46 (120)
T ss_dssp HHHHHHHCSSEEEE-EE---TTEEEEECHHHHHHTTSCHHHHTTCB
T ss_pred HHHHHhcCCceEEE-ec---CCEEHHHHHHHHHHhCcCHHHhCCCc
Confidence 56789999999965 66 89999999999999999999999973
No 83
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=98.45 E-value=2e-07 Score=63.71 Aligned_cols=43 Identities=42% Similarity=0.637 Sum_probs=36.9
Q ss_pred HhhcccccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhcc
Q 022983 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITRI 288 (289)
Q Consensus 246 ~~e~~~~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~~ 288 (289)
.++.++++++++|...++++|+++|++|++++||+.+|++|+.
T Consensus 2 ~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~ 44 (115)
T 4eet_B 2 SPEFIEKNFVITDPRLPDNPIIFASDGFLELTEYSREEILGRN 44 (115)
T ss_dssp ---CCCCSEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSC
T ss_pred ccccCCCcEEEEcCCCCCCcEEEEcHHHHHHHCcCHHHHhCCC
Confidence 4678899999999866689999999999999999999999973
No 84
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=98.45 E-value=1e-07 Score=66.56 Aligned_cols=41 Identities=5% Similarity=0.008 Sum_probs=37.0
Q ss_pred HHhhcccccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhcc
Q 022983 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITRI 288 (289)
Q Consensus 245 ~~~e~~~~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~~ 288 (289)
..++++++.|++.|+ +|+|+|+|+++++++||+++|++|+.
T Consensus 6 ll~e~~~d~i~~~d~---~g~i~~~n~~~~~~~G~~~~el~g~~ 46 (121)
T 3f1p_B 6 LNVCQPTRFISRHNI---EGIFTFVDHRCVATVGYQPQELLGKN 46 (121)
T ss_dssp --CCCCCEEEEEECT---TSBEEEECTTHHHHHSCCGGGTTTSB
T ss_pred ceecCCCceEEEECC---CceEEEECcchhhhhCCChHHHcCCC
Confidence 467889999999999 99999999999999999999999973
No 85
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=98.44 E-value=1.5e-07 Score=65.61 Aligned_cols=42 Identities=14% Similarity=0.171 Sum_probs=38.6
Q ss_pred HHHhhcccccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhcc
Q 022983 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITRI 288 (289)
Q Consensus 244 ~~~~e~~~~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~~ 288 (289)
..+++.++++|++.|. +|+|+++|+++++++||+.+|++|+.
T Consensus 15 ~~il~~~~~~i~~~D~---~g~i~~~N~a~~~l~g~~~~e~~G~~ 56 (118)
T 3fg8_A 15 ENLYFQGGLGFMALDE---DLRIIYVNSGCLRHVRRSRDELLGRV 56 (118)
T ss_dssp CCSSSCTTCEEEEECT---TCBEEEECHHHHHHHTCCHHHHTTSB
T ss_pred HHHHhhCCceEEEECC---CCeEEEECHHHHHHhCCCHHHHcCCc
Confidence 3467889999999999 99999999999999999999999973
No 86
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=98.42 E-value=1.5e-07 Score=65.83 Aligned_cols=43 Identities=12% Similarity=0.248 Sum_probs=39.8
Q ss_pred HHHHhhcccccEEEeCCCCCCCCEEEecHHHHHhhC------------CChHhHhhcc
Q 022983 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG------------AQIFTKITRI 288 (289)
Q Consensus 243 ~~~~~e~~~~~i~i~d~~~~~~~i~~vN~~f~~~tG------------ys~~E~~G~~ 288 (289)
+..+++.++++|+++|. +|+|+++|++|++++| |+.++++|+.
T Consensus 7 l~~il~~~~~gviv~D~---~g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~ 61 (121)
T 4hi4_A 7 IASALDNVSANVMIADN---DLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGAN 61 (121)
T ss_dssp HHHHHTTSSSEEEEEET---TCBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCB
T ss_pred HHHHHhcCCccEEEEcC---CCeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCC
Confidence 67789999999999999 9999999999999985 9999999973
No 87
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.40 E-value=3.3e-07 Score=63.14 Aligned_cols=41 Identities=15% Similarity=0.172 Sum_probs=38.7
Q ss_pred HHHhhcccccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhc
Q 022983 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITR 287 (289)
Q Consensus 244 ~~~~e~~~~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~ 287 (289)
...++.++++|+++|. +|+|+++|+++++++||+.++++|+
T Consensus 10 ~~il~~~~~~i~~~D~---~g~I~~~N~aa~~l~g~~~~~~~g~ 50 (115)
T 3b33_A 10 SAILNNMVTATLILDD---GLAIRYANPAAELLFSQSAKRIVEQ 50 (115)
T ss_dssp HHHHHHCSSEEEEECT---TCBEEEECHHHHHHTTSCHHHHTTC
T ss_pred HHHHhhcCceEEEECC---CCcEEEECHHHHHHhCCCHHHHhCC
Confidence 4578999999999999 9999999999999999999999997
No 88
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=98.40 E-value=1.9e-07 Score=65.08 Aligned_cols=43 Identities=9% Similarity=0.040 Sum_probs=36.5
Q ss_pred HHHHhhcccccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhcc
Q 022983 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITRI 288 (289)
Q Consensus 243 ~~~~~e~~~~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~~ 288 (289)
+...++.++++|+++|. +|+|+++|++|++++||+.++++|+.
T Consensus 21 ~~~i~~~~~~~i~~~d~---~g~i~~~N~~~~~~~g~~~~~~~g~~ 63 (125)
T 3fc7_A 21 FESLVSDSPDGIVHLTT---NGTILSVNPSMAGRLGADPDTLVGQQ 63 (125)
T ss_dssp -----CCSCCEEEEEET---TSBEEEECHHHHHHHTSCHHHHTTSB
T ss_pred HHHHHhcCCCeEEEEcC---CCeEEEECHHHHHHhCCCHHHHcCcc
Confidence 56688999999999999 99999999999999999999999973
No 89
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=98.33 E-value=5.5e-07 Score=66.17 Aligned_cols=46 Identities=43% Similarity=0.631 Sum_probs=41.6
Q ss_pred HHHHhhcccccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhcc
Q 022983 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITRI 288 (289)
Q Consensus 243 ~~~~~e~~~~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~~ 288 (289)
+...++.++++|+++|...++++|+++|++|++++||+.+|++|+.
T Consensus 37 ~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~g~~ 82 (166)
T 3ue6_A 37 LVKALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRN 82 (166)
T ss_dssp HHHHHHHTTSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSC
T ss_pred HHHHHhcCCceEEEEEccCCCCcEEEECHHHHHHhCcCHHHHcCCC
Confidence 7788999999999999844569999999999999999999999973
No 90
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=98.33 E-value=2.1e-07 Score=64.68 Aligned_cols=40 Identities=8% Similarity=-0.055 Sum_probs=37.1
Q ss_pred HhhcccccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhcc
Q 022983 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITRI 288 (289)
Q Consensus 246 ~~e~~~~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~~ 288 (289)
.+++++++|++.|. +|+|+++|++|++++||+.+|++|+.
T Consensus 8 ~~~~~~~~i~~~d~---~g~i~~~N~~~~~~~G~~~~el~g~~ 47 (121)
T 2kdk_A 8 INVKPTEFITRFAV---NGKFVYVDQRATAILGYLPQELLGTS 47 (121)
T ss_dssp CCCCSSEEEEEECT---TSBEEEECTHHHHHTCCCTTTSBTSB
T ss_pred cccCCccEEEEECC---CeeEEEEChhHHHHHCCCHHHHcCCc
Confidence 56788899999999 99999999999999999999999973
No 91
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=98.31 E-value=3.8e-07 Score=62.25 Aligned_cols=43 Identities=12% Similarity=0.041 Sum_probs=40.0
Q ss_pred HHHHhhcccccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhcc
Q 022983 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITRI 288 (289)
Q Consensus 243 ~~~~~e~~~~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~~ 288 (289)
+...++.+++++++.|. +++|+++|++|++++||+.++++|+.
T Consensus 5 ~~~~~~~~~~~i~~~d~---~g~i~~~N~~~~~~~g~~~~~~~g~~ 47 (114)
T 3luq_A 5 LRLFTEHAPAALAMFDR---EMRYLAVSRRWREDYGLGDGDILGMS 47 (114)
T ss_dssp HHHHHHTCSSEEEEEET---TCBEEEECHHHHHHTTCCSSCCTTCB
T ss_pred HHHHHhcCCceEEEEcC---CcEEEEECHHHHHHHCCCHHHHcCCc
Confidence 56788999999999999 99999999999999999999999973
No 92
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=98.30 E-value=6.6e-07 Score=71.40 Aligned_cols=46 Identities=26% Similarity=0.297 Sum_probs=41.0
Q ss_pred HHHHhhcccccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhcc
Q 022983 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITRI 288 (289)
Q Consensus 243 ~~~~~e~~~~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~~ 288 (289)
+..+++.++++|+++|....+|+|+++|++|++++||+.+|++|+.
T Consensus 65 ~~~i~~~~~~~i~~~d~~~~~g~i~~~N~a~~~l~G~~~~el~g~~ 110 (258)
T 3p7n_A 65 VLDLIEASPIASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRN 110 (258)
T ss_dssp HHHHHHTCSSEEEEECTTSTTCCEEEECHHHHHHHCCCGGGTTTSC
T ss_pred HHHHHhcCCccEEEEcCCCCCCcEEEEhHHHHHHcCCCHHHHCCCC
Confidence 7788999999999999843366799999999999999999999973
No 93
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=98.30 E-value=5.5e-07 Score=62.24 Aligned_cols=36 Identities=22% Similarity=0.200 Sum_probs=32.9
Q ss_pred ccccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhcc
Q 022983 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITRI 288 (289)
Q Consensus 250 ~~~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~~ 288 (289)
+.+.|+++|+ +|+|+++|++|++++||+.+|++|+.
T Consensus 8 ~~~~i~~~d~---~g~i~~~n~~~~~~~Gy~~~el~g~~ 43 (117)
T 3f1p_A 8 SKTFLSEHSM---DMKFTYCDDRITELIGYHPEELLGRS 43 (117)
T ss_dssp GGEEEEEECT---TCBEEEECTHHHHHHCCCHHHHTTSB
T ss_pred CccEEEEECC---CceEEEECcChhhhhCCCHHHHcCCc
Confidence 3578899999 99999999999999999999999973
No 94
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=98.27 E-value=7.3e-07 Score=62.41 Aligned_cols=43 Identities=37% Similarity=0.573 Sum_probs=37.4
Q ss_pred HhhcccccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhcc
Q 022983 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITRI 288 (289)
Q Consensus 246 ~~e~~~~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~~ 288 (289)
+++.++++++++|...++|+|+++|++|++++||+.+|++|+.
T Consensus 2 ~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~e~~g~~ 44 (128)
T 3t50_A 2 ASEFTLMPMLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRN 44 (128)
T ss_dssp CCCCCSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSC
T ss_pred ccccCcccEEEecCCCCCCcEEEEcHHHHHHhCcCHHHHcCCC
Confidence 3677889999999833477999999999999999999999973
No 95
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=98.24 E-value=8.8e-07 Score=57.92 Aligned_cols=35 Identities=11% Similarity=0.071 Sum_probs=32.8
Q ss_pred cccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhcc
Q 022983 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITRI 288 (289)
Q Consensus 251 ~~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~~ 288 (289)
+++|+++|. +++|+++|+++++++||+.+|++|+.
T Consensus 2 ~~~i~~~d~---~g~i~~~N~~~~~l~g~~~~~~~g~~ 36 (96)
T 3a0s_A 2 ETAIITLSK---DGRITEWNKKAEQLFGLKKENVLGRR 36 (96)
T ss_dssp CCEEEEEET---TSBEEEECHHHHHHHCCCHHHHTTSB
T ss_pred CceEEEEcC---CCCEeehhHHHHHHhCCCHHHhcCCC
Confidence 578999999 99999999999999999999999973
No 96
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=98.20 E-value=8.2e-07 Score=69.88 Aligned_cols=43 Identities=9% Similarity=0.201 Sum_probs=39.9
Q ss_pred HHHHhhcccccEEEeCCCCCCCCEEEecHHHHHhh------------CCChHhHhhcc
Q 022983 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLT------------GAQIFTKITRI 288 (289)
Q Consensus 243 ~~~~~e~~~~~i~i~d~~~~~~~i~~vN~~f~~~t------------Gys~~E~~G~~ 288 (289)
+..+++.++++|+++|+ +|+|+|+|++|++++ ||+.+|++|+.
T Consensus 24 l~~iLd~~~~~vii~D~---~g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~ 78 (233)
T 3vol_A 24 IKSALDNVSANVMIADN---DLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGAN 78 (233)
T ss_dssp HHHHHTTSSSEEEEEET---TSBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCB
T ss_pred HHHHHhcCCCcEEEECC---CCcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCC
Confidence 67789999999999999 999999999999988 89999999973
No 97
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=98.20 E-value=1.3e-06 Score=58.53 Aligned_cols=37 Identities=19% Similarity=0.467 Sum_probs=33.5
Q ss_pred ccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhcc
Q 022983 252 QSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITRI 288 (289)
Q Consensus 252 ~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~~ 288 (289)
.+|+++|...++++|+++|++|++++||+.+|++|+.
T Consensus 2 ~~i~i~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~ 38 (110)
T 1byw_A 2 RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRP 38 (110)
T ss_dssp CEEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSB
T ss_pred CCEEEEeccCCCCcEEEECHHHHHHhCCCHHHHccCC
Confidence 5889999866679999999999999999999999973
No 98
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=98.19 E-value=9.3e-07 Score=63.82 Aligned_cols=41 Identities=34% Similarity=0.480 Sum_probs=34.5
Q ss_pred hhcccccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhcc
Q 022983 247 LGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITRI 288 (289)
Q Consensus 247 ~e~~~~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~~ 288 (289)
++.. ++|+++|...++|+|+++|++|++++||+.+|++|+.
T Consensus 32 ~~~~-~~i~~~d~~d~~g~i~~~N~a~~~l~G~~~~el~g~~ 72 (149)
T 3d72_A 32 VDTS-VALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRN 72 (149)
T ss_dssp CCTT-SCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSC
T ss_pred hcCC-ccEEEEeccCCCCcEEEECHHHHHHHCcCHHHHcCCC
Confidence 3443 8999999333399999999999999999999999973
No 99
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=98.16 E-value=1e-06 Score=61.24 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=37.3
Q ss_pred HHhhcccccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhc
Q 022983 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITR 287 (289)
Q Consensus 245 ~~~e~~~~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~ 287 (289)
..++.+++++++.|. +|+|+++|+++++++||+.++++|+
T Consensus 3 ~l~~~~~~~i~~~d~---~g~i~~~N~~~~~~~g~~~~~~~g~ 42 (126)
T 3mjq_A 3 NFLETIEDMILIINR---EGRLLYANTAVPKKLGYTHEELMSM 42 (126)
T ss_dssp TTGGGCSSEEEEEET---TSBEEEECTHHHHHHSCCHHHHHHS
T ss_pred hHHhhCCceEEEEeC---CCcEEEEcHHHHHHHCCCHHHHcCC
Confidence 357888999999999 9999999999999999999999986
No 100
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=98.09 E-value=3.9e-06 Score=57.46 Aligned_cols=43 Identities=12% Similarity=-0.028 Sum_probs=39.9
Q ss_pred HHHHhhcccccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhcc
Q 022983 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITRI 288 (289)
Q Consensus 243 ~~~~~e~~~~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~~ 288 (289)
+...++.+++++++.|. +++|+++|++|++++||+.++++|+.
T Consensus 9 ~~~~~~~~~~~i~~~d~---~~~i~~~N~~~~~~~g~~~~~~~g~~ 51 (124)
T 3lyx_A 9 RAKAFDYVFDAIVVTDL---QGFIIDWNKGSETLYGYSKEQAIGQP 51 (124)
T ss_dssp HHHGGGTCSSEEEEEET---TCBEEEECHHHHHHHCCCHHHHTTSB
T ss_pred HHHHHhhcCceEEEECC---CCcEeehhhHHHHHhCCCHHHHcCCC
Confidence 56788999999999999 99999999999999999999999863
No 101
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=98.03 E-value=5.4e-06 Score=57.17 Aligned_cols=45 Identities=36% Similarity=0.600 Sum_probs=39.4
Q ss_pred HHHHhhcccccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhc
Q 022983 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITR 287 (289)
Q Consensus 243 ~~~~~e~~~~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~ 287 (289)
+...++.++++++++|...++++|+++|++|++++||+.++++|+
T Consensus 8 ~~~~~~~~~~~i~~~d~~d~~~~i~~~N~~~~~~~g~~~~~~~g~ 52 (130)
T 2z6d_A 8 LKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGR 52 (130)
T ss_dssp HHHHHHHTTCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTS
T ss_pred HHHHHHhcccceeeeeccCCCCcEEEecHHHHHHhCcCHHHHcCC
Confidence 667889999999999921129999999999999999999999986
No 102
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=98.01 E-value=6.2e-06 Score=62.39 Aligned_cols=43 Identities=16% Similarity=0.113 Sum_probs=40.4
Q ss_pred HHHHhhcccccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhcc
Q 022983 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITRI 288 (289)
Q Consensus 243 ~~~~~e~~~~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~~ 288 (289)
+...++.+++||+++|. +|+|+++|+++++++||+.++++|+-
T Consensus 82 l~~il~~~~~gvi~~D~---~g~I~~~N~aa~~llg~~~~~~~g~~ 124 (190)
T 2jhe_A 82 LSALLEALPEPVLSVDM---KSKVDMANPASCQLFGQKLDRLRNHT 124 (190)
T ss_dssp HHHHHHHCSSCEEEECT---TCBEEEECHHHHHHHTSCHHHHTTSB
T ss_pred HHHHHHhCCCcEEEEcC---CCCEEEEcHHHHHHhCCCHHHhcCcc
Confidence 67789999999999999 99999999999999999999999973
No 103
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=97.97 E-value=2.3e-06 Score=58.65 Aligned_cols=42 Identities=24% Similarity=0.158 Sum_probs=39.0
Q ss_pred HHHHhhcccccEEEeCCCCCCCCEEEecHHHHHhhCC---ChHhHhhc
Q 022983 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGA---QIFTKITR 287 (289)
Q Consensus 243 ~~~~~e~~~~~i~i~d~~~~~~~i~~vN~~f~~~tGy---s~~E~~G~ 287 (289)
+...++.++++|++.|. +|+|+++|++|++++|| +.++++|+
T Consensus 17 ~~~il~~~~~~i~~~d~---~g~i~~~N~~~~~~~g~~~~~~~~~~g~ 61 (118)
T 2w0n_A 17 RQAMLQSIKEGVVAVDD---RGEVTLINDAAQELLNYRKSQDDEKLST 61 (118)
T ss_dssp HHHHHHCCCCCCEEEBT---TTBCCCBCHHHHHHHCSCTTTTTSSCCC
T ss_pred HHHHHhhccccEEEECC---CCcEeehhHHHHHHhCCCccChhhhhcc
Confidence 56788999999999999 99999999999999998 88999886
No 104
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=97.96 E-value=8.7e-06 Score=56.99 Aligned_cols=46 Identities=15% Similarity=0.363 Sum_probs=39.9
Q ss_pred HHHHhhcccccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhcc
Q 022983 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITRI 288 (289)
Q Consensus 243 ~~~~~e~~~~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~~ 288 (289)
+...++.++++++++|...++++|+++|++|++++||+.++++|+.
T Consensus 21 ~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~~~~g~~ 66 (138)
T 2l0w_A 21 IIRKFEGQSRKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRP 66 (138)
T ss_dssp HHHHHTTTTSEEEEEESSSTTCBEEEECSHHHHHHSCCHHHHTTSB
T ss_pred HHHHHhcCCCCEEEEecCCCCCEEEEeCHHHHHHhCCCHHHHcCCC
Confidence 4556677999999999755579999999999999999999999973
No 105
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=97.92 E-value=1.1e-05 Score=55.46 Aligned_cols=42 Identities=7% Similarity=0.024 Sum_probs=39.5
Q ss_pred HHHHhhcccccEEEeCCCCCC-CCEEEecHHHHHhhCCChHhHhhc
Q 022983 243 LYISLGRIKQSFVLIDPHLPD-MPMVYASDAFLKLTGAQIFTKITR 287 (289)
Q Consensus 243 ~~~~~e~~~~~i~i~d~~~~~-~~i~~vN~~f~~~tGys~~E~~G~ 287 (289)
+...++.+++++++.|. + ++|+++|++|++++||+.++++|+
T Consensus 13 ~~~~~~~~~~~i~~~d~---~~~~i~~~n~~~~~~~g~~~~~~~~~ 55 (125)
T 3eeh_A 13 VRELTEATNDILWEFTA---DLSEVLVINSAYEDIWGRSVAKLREN 55 (125)
T ss_dssp HHHHHSCCCCEEEEEET---TSSCEEEECTHHHHHHSSCHHHHHHC
T ss_pred HHHHHhcCCceEEEEEc---CCCcEEEecHHHHHHHCCCHHHHccC
Confidence 67789999999999999 8 999999999999999999999886
No 106
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=97.88 E-value=8.2e-06 Score=59.54 Aligned_cols=43 Identities=19% Similarity=0.190 Sum_probs=40.1
Q ss_pred HHHHhhcccccEEEeCCCCCCC---CEEEecHHHHHhhCCChHhHhhcc
Q 022983 243 LYISLGRIKQSFVLIDPHLPDM---PMVYASDAFLKLTGAQIFTKITRI 288 (289)
Q Consensus 243 ~~~~~e~~~~~i~i~d~~~~~~---~i~~vN~~f~~~tGys~~E~~G~~ 288 (289)
+...++.++++++++|. ++ +|+++|++|++++||+.++++|+.
T Consensus 27 ~~~i~~~~~~~i~~~d~---~~~~~~i~~~N~~~~~~~g~~~~~~~g~~ 72 (162)
T 3sw1_A 27 LQSMVDASNDGIVVAEK---EGDDTILIYVNAAFEYLTGYSRDEILYQD 72 (162)
T ss_dssp HHHHHHTCSSEEEEEEE---ETTEEEEEEECHHHHHHHTCCHHHHTTSB
T ss_pred HHHHHhhccCcEEEEeC---CCCccEEEEECHHHHHHHCCCHHHHcCCC
Confidence 67789999999999999 99 999999999999999999999973
No 107
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=97.88 E-value=7.4e-06 Score=59.64 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=37.4
Q ss_pred HHHHhhcccccEEEeC-CCCCCCCEEEecHHHHHhhCCChHhHhhc
Q 022983 243 LYISLGRIKQSFVLID-PHLPDMPMVYASDAFLKLTGAQIFTKITR 287 (289)
Q Consensus 243 ~~~~~e~~~~~i~i~d-~~~~~~~i~~vN~~f~~~tGys~~E~~G~ 287 (289)
+...++.++.++++.| . +++|+++|++|++++||+ +++|+
T Consensus 19 ~~~~~~~~~~~i~~~d~~---~~~i~~~N~~~~~~~g~~--~~~G~ 59 (158)
T 3k3c_A 19 VRRIFEHIPAILVGLEGP---DHRFVAVNAAYRGFSPLL--DTVGQ 59 (158)
T ss_dssp HHHHHHHCSSEEEEEETT---TTEEEEECHHHHHHCTTC--CSTTS
T ss_pred HHHHHhcCCceEEEEECC---CcEeHHHHHHHHHHcCCc--hhcCC
Confidence 6778999999999999 8 999999999999999999 88886
No 108
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=97.87 E-value=1.5e-05 Score=58.14 Aligned_cols=43 Identities=21% Similarity=0.160 Sum_probs=40.1
Q ss_pred HHHHhhcccccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhcc
Q 022983 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITRI 288 (289)
Q Consensus 243 ~~~~~e~~~~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~~ 288 (289)
+...++.+++++++.|. +++|+++|++|++++||+.++++|+.
T Consensus 42 ~~~~l~~~~~~i~~~d~---~g~i~~~N~~~~~l~g~~~~~~~g~~ 84 (167)
T 1v9y_A 42 FFPALEQNMMGAVLINE---NDEVMFFNPAAEKLWGYKREEVIGNN 84 (167)
T ss_dssp HHHHHHTCSSEEEEECT---TSBEEEECHHHHHHHSCCGGGTTTSB
T ss_pred HHHHHHhCCCCEEEECC---CCcEEEECHHHHHHhCCCHHHHcCCC
Confidence 67789999999999999 99999999999999999999999873
No 109
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=97.82 E-value=1e-05 Score=60.87 Aligned_cols=41 Identities=15% Similarity=0.192 Sum_probs=37.9
Q ss_pred HHHHhhcccccEEEeC-CCCCCCCEEEecHHHHHhhCCChHhHhhcc
Q 022983 243 LYISLGRIKQSFVLID-PHLPDMPMVYASDAFLKLTGAQIFTKITRI 288 (289)
Q Consensus 243 ~~~~~e~~~~~i~i~d-~~~~~~~i~~vN~~f~~~tGys~~E~~G~~ 288 (289)
+...++.+++++++.| . +++|+++|++|++++||+ +++|+-
T Consensus 39 l~~l~~~~~~~i~~~d~~---~g~i~~~N~a~~~l~G~~--~~~G~~ 80 (185)
T 3kx0_X 39 VRRIFEHIPAILVGLEGP---DHRFVAVNAAYRGFSPLL--DTVGQP 80 (185)
T ss_dssp HHHHHHHCSSEEEEEETT---TTEEEEECHHHHHHCCCC--SCTTSB
T ss_pred HHHHHhcCCceEEEEECC---CcEEEEEcHHHHHHcCCc--cccCCc
Confidence 6778999999999999 8 999999999999999999 888873
No 110
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=97.00 E-value=2.9e-06 Score=69.42 Aligned_cols=39 Identities=26% Similarity=0.165 Sum_probs=34.1
Q ss_pred HHhhcccccEEEeCCCCCCCCEEEecHHHHHhh---CCChHhHhhc
Q 022983 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLT---GAQIFTKITR 287 (289)
Q Consensus 245 ~~~e~~~~~i~i~d~~~~~~~i~~vN~~f~~~t---Gys~~E~~G~ 287 (289)
..++++.+||+++|. +|+|+++|+++++++ |+. ++++|+
T Consensus 174 ~~~~~~~dGIivvD~---~G~Ii~~N~aA~~ll~~lG~~-~~~iGk 215 (305)
T 2ykf_A 174 RSSPRAGDGFIRLDV---DGVVSYASPNALSAYHRMGLT-TELEGV 215 (305)
Confidence 357888999999999 999999999999997 565 788886
No 111
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=97.77 E-value=3.8e-05 Score=53.35 Aligned_cols=100 Identities=11% Similarity=0.091 Sum_probs=75.2
Q ss_pred EEEEeCCCCCccEEEccHHHHHHhCCCc--cccCCCCCCCccCCCCCH--HHHHHHHHHHHhCCCeEEEEEEEecCCCEE
Q 022983 31 FTITDPSISGHPIVFASRGFLKMSGFSR--AEIIGRNGRMFQGPRTNR--RTIMEIREAIREERPIEVNLLNYKKDGTPF 106 (289)
Q Consensus 31 i~~~d~~~~~g~i~~~N~~~~~~~G~~~--~e~~g~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~ 106 (289)
+.-.|.+ |+|+++..... ..+|.+ ++++|+++.+++++.+.. .......+++..|.....-++++.++|..+
T Consensus 10 ~sRh~~d---GKf~~vDq~~~-r~~~~~g~qdLlGrsiy~f~H~~D~~~s~l~~h~~~vl~~Gq~~S~~YRfr~k~g~~V 85 (132)
T 1oj5_A 10 MTKQDTT---GKIISIDTSSL-RAAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDGTML 85 (132)
T ss_dssp EEEECTT---CCEEEEECHHH-HTTCCSCHHHHHHHHHHHHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEEECTTSCEE
T ss_pred EEeecCC---CcEEEEecccc-cccccccHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHcCCccccceEEEecCCcEE
Confidence 3445777 99999999887 477888 899999999999988854 677777788877776667789999999999
Q ss_pred EEEEEEEEeecCCCCcEEEEEEEEeccc
Q 022983 107 WMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (289)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~~~~~~~DIT 134 (289)
|+......+.+|-...+..++++-.=+.
T Consensus 86 ~~qT~sk~f~np~t~e~e~Ivs~n~v~r 113 (132)
T 1oj5_A 86 SAHTRCKLCYPQSPDMQPFIMGIHIIDR 113 (132)
T ss_dssp EEEEEEEEECC----CCCEEEEEEEEEC
T ss_pred EEEEEEEEecCCCCCCCCEEEEEEEEEc
Confidence 9998888887633445555555544333
No 112
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=97.75 E-value=3.5e-05 Score=54.26 Aligned_cols=44 Identities=43% Similarity=0.727 Sum_probs=38.5
Q ss_pred HHhhcccccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhcc
Q 022983 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITRI 288 (289)
Q Consensus 245 ~~~e~~~~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~~ 288 (289)
..++.+++++++.|...++++|+++|++|++++||+.++++|+.
T Consensus 6 ~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~ 49 (146)
T 2v0u_A 6 TTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRN 49 (146)
T ss_dssp CTGGGSSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSC
T ss_pred HHHhcCCCcEEEEcCCCCCceEEEEcHHHHHHHCcCHHHHcCCC
Confidence 45788899999999744578999999999999999999999873
No 113
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=97.66 E-value=1.8e-05 Score=57.69 Aligned_cols=42 Identities=12% Similarity=0.156 Sum_probs=38.6
Q ss_pred HHHHhhcccccEEEeCCCCCCCCEEEecHH---HHHhhCCChHhHhhcc
Q 022983 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDA---FLKLTGAQIFTKITRI 288 (289)
Q Consensus 243 ~~~~~e~~~~~i~i~d~~~~~~~i~~vN~~---f~~~tGys~~E~~G~~ 288 (289)
+...++.++++|+++|. +|+|+|+|++ +++++| ..++++||-
T Consensus 21 l~~IL~~~~~gI~~vD~---~g~I~~~N~a~~~~~~i~g-~~~~~iGr~ 65 (151)
T 2qkp_A 21 ANLILNHLPLEITFVNK---DDIFQYYNDSVPAAEMVFK-RTPSQVGRN 65 (151)
T ss_dssp HHHHHHHSSSEEEEEET---TSBEEEECCCSCGGGCSSC-CCGGGTTSB
T ss_pred HHHHHHhCCCceEEEcC---CCeEEEEeCCCchhhhhcC-CCHHHcCCC
Confidence 67789999999999999 9999999999 999999 567899984
No 114
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=97.61 E-value=2.9e-05 Score=53.40 Aligned_cols=41 Identities=12% Similarity=-0.065 Sum_probs=31.9
Q ss_pred HHHHhhcccccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhh
Q 022983 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKIT 286 (289)
Q Consensus 243 ~~~~~e~~~~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G 286 (289)
+..+++.++.++++.|. ++.++++|++|++++||+.++++|
T Consensus 9 l~~~~~~~~~~i~~~d~---~~~~~~~n~~~~~~~G~~~~~~~~ 49 (125)
T 3nja_A 9 LHTAESDAGIGSWVLHM---ESGRLEWSQAVHDIFGTDSATFDA 49 (125)
T ss_dssp --------CCEEEEEET---TTTEEEECHHHHHHHTCCTTTCCC
T ss_pred HHHHHHhCCeeEEEEEc---CCCcEEECHHHHHHhCCCcccccc
Confidence 55678889999999999 999999999999999999999887
No 115
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=97.57 E-value=1.5e-05 Score=54.53 Aligned_cols=42 Identities=12% Similarity=-0.116 Sum_probs=38.7
Q ss_pred HHHHhhcccccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhc
Q 022983 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITR 287 (289)
Q Consensus 243 ~~~~~e~~~~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~ 287 (289)
+...++.+++++++.|. +++++++|+++++++||+.+|++|+
T Consensus 6 ~~~l~~~~~~~i~~~d~---~~~~~~~n~~~~~~~G~~~~~~~~~ 47 (118)
T 3icy_A 6 LQALVDNIPAAIYHLDV---SGQATIRFRPPAFLKTLVSEHAGTT 47 (118)
T ss_dssp HHHHHTTCCCCCEEECT---TSCEEECCCCCGGGGGGEEEETTEE
T ss_pred HHHHHhcCCceEEEEEc---CCCceEEechhHhhcCCCHHHccCC
Confidence 56788999999999999 9999999999999999999998775
No 116
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=97.37 E-value=6.1e-05 Score=67.98 Aligned_cols=41 Identities=12% Similarity=0.137 Sum_probs=37.4
Q ss_pred HHHhhcccccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhc
Q 022983 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITR 287 (289)
Q Consensus 244 ~~~~e~~~~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~ 287 (289)
...++.+.++|+++|. +|+|+++|++|++++||+.+|++|+
T Consensus 521 ~~lle~a~~~i~~~D~---~grI~~~N~a~~~l~G~s~~e~~g~ 561 (635)
T 4eho_A 521 SSQVHASMQPVLITDA---EGRILLMNDSFRDMLPAGSPSAVHL 561 (635)
T ss_dssp HHHHHHCSSCCEEEET---TCCEEEECHHHHTTSCSSCCCCCSS
T ss_pred HHHHHhCCCcEEEECC---CCeEeeHHHHHHHHHCcChHHHcCc
Confidence 4456778899999999 9999999999999999999999986
No 117
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=97.23 E-value=0.00016 Score=49.37 Aligned_cols=34 Identities=18% Similarity=-0.016 Sum_probs=29.1
Q ss_pred cccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhh
Q 022983 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKIT 286 (289)
Q Consensus 251 ~~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G 286 (289)
+++++..|. ++++++|+|+++++++||+.+|++|
T Consensus 3 ~~giw~~d~--~~~~~~~~n~~~~~l~G~~~~e~~~ 36 (115)
T 3h9w_A 3 KAIPWKINW--QTMAFEYIGPQIEALLGWPQGSWKS 36 (115)
T ss_dssp CCEEEEEET--TTTEEEEECTHHHHHHCSCGGGCCB
T ss_pred ceEEEEEEc--CCCcEEEEChhHHHHhCCChHHccC
Confidence 567888883 2778999999999999999999876
No 118
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=97.12 E-value=0.00039 Score=49.52 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=38.1
Q ss_pred HHHHhhcccccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhc
Q 022983 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITR 287 (289)
Q Consensus 243 ~~~~~e~~~~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~ 287 (289)
+..+++.++.+++..|+ ++.++++|++|.+++||+.+++.|.
T Consensus 11 l~~~~~~~~~g~w~~d~---~~~~~~~s~~~~~~~G~~~~~~~~~ 52 (142)
T 3mr0_A 11 FQLAVSGASAGLWDWNP---KTGAMYLSPHFKKIMGYEDHELPDE 52 (142)
T ss_dssp HHHHHHHTTCEEEEECT---TTCCEEECHHHHHHTTCCGGGSCSE
T ss_pred HHHHHHhCCcEEEEEEc---CCCeEEECHHHHHHhCCCccccCCC
Confidence 67788899999999999 9999999999999999999987764
No 119
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=96.94 E-value=0.00032 Score=58.94 Aligned_cols=42 Identities=14% Similarity=0.149 Sum_probs=39.2
Q ss_pred hHHHHhhcccccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhcc
Q 022983 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITRI 288 (289)
Q Consensus 242 ~~~~~~e~~~~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~~ 288 (289)
.+..+++.+++||+++|. +|+|+++|++ ++++ |+.++++||-
T Consensus 240 ~l~~IL~~l~dgIivvD~---~g~I~~~N~a-e~i~-~~~~e~iGr~ 281 (369)
T 3cax_A 240 ELKAIFEALPVDVTFIDK---DDRVRFFSPG-ERIF-TRTPSVLGRP 281 (369)
T ss_dssp HHHHHHHHSSSEEEEECT---TSBEEEECCS-SCSS-CCCGGGTTCB
T ss_pred HHHHHHHhCCCcEEEECC---CCcEEEEcCH-HHcc-CChHHHcCCc
Confidence 377889999999999999 9999999999 9999 9999999983
No 120
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=91.83 E-value=0.17 Score=41.56 Aligned_cols=40 Identities=8% Similarity=0.015 Sum_probs=33.2
Q ss_pred EEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCC
Q 022983 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72 (289)
Q Consensus 31 i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~ 72 (289)
+++++.+ +++|+.+|..+.+++|+++++++|++...++++
T Consensus 45 Ll~~~~~--~~~i~~~S~N~~~~lg~~~~~llG~~l~~ll~~ 84 (337)
T 2ool_A 45 LFVVSET--DLRIASVSANVEDLLRQPPASLLNVPIAHYLTA 84 (337)
T ss_dssp EEEECTT--TCBEEEEETTHHHHHSSCGGGGTTCBGGGGBCH
T ss_pred EEEEECC--CCEEEEEehhHHHHHCcCHHHHcCCCHHHHcCH
Confidence 3445532 389999999999999999999999998888765
No 121
>4ew7_A Conjugative transfer: regulation; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology; 1.67A {Salmonella enterica subsp}
Probab=89.42 E-value=3.1 Score=27.12 Aligned_cols=92 Identities=10% Similarity=0.141 Sum_probs=53.4
Q ss_pred HHHHHHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHH-HHHHhCCCeEEEE
Q 022983 18 LWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR-EAIREERPIEVNL 96 (289)
Q Consensus 18 ~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~e~ 96 (289)
--.+.+..++|..+.+-+.. ..|+|+|.+|.+||--....+-|.+..... -+.....+. +...-|.... -.
T Consensus 20 L~iq~iY~nSPVpVCVRNq~---RkilYaN~aF~elF~Ked~~~sg~S~~~~~----vE~~LS~LELeCqsLGhG~a-f~ 91 (127)
T 4ew7_A 20 LSIQDIYKNSPVPVCVRNQS---RKIIYANGAFIELFSKEDQPLSGDSYNRYG----VEVFLSSLELECQSLGHGAA-FC 91 (127)
T ss_dssp HHHHHHHTTCSSCEEEECTT---SCEEEECHHHHHHTTSCCCGGGCTTSSHHH----HHHHHHHHHHHHHHHCTTCE-EE
T ss_pred HhHHhhhcCCCccEEEeccc---ceEEEecchHHHHhhcccCcccCcccceee----ehhhHHHHHHHHHhhcCCce-EE
Confidence 34577899999999999999 999999999999975444333333322110 011111121 1122233322 23
Q ss_pred EEEecCCCEEEEEEEEEEeec
Q 022983 97 LNYKKDGTPFWMLFKMSLVFG 117 (289)
Q Consensus 97 ~~~~~~g~~~~~~~~~~~~~~ 117 (289)
+...-.|..+.+++....+.+
T Consensus 92 r~Fn~~~e~yQIRmE~iSf~~ 112 (127)
T 4ew7_A 92 RRFNFHGEIYQIRMENISFDN 112 (127)
T ss_dssp EEEEETTEEEEEEEEEEECTT
T ss_pred EEeecCCceEEEEEEEeeecC
Confidence 344566777776666555543
No 122
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=86.64 E-value=0.48 Score=38.92 Aligned_cols=25 Identities=12% Similarity=0.054 Sum_probs=24.0
Q ss_pred CCCEEEecHHHHHhhCCChHhHhhc
Q 022983 263 DMPMVYASDAFLKLTGAQIFTKITR 287 (289)
Q Consensus 263 ~~~i~~vN~~f~~~tGys~~E~~G~ 287 (289)
+++|+++|..+.+++|++.++++|+
T Consensus 52 ~~~i~~~S~N~~~~lg~~~~~llG~ 76 (337)
T 2ool_A 52 DLRIASVSANVEDLLRQPPASLLNV 76 (337)
T ss_dssp TCBEEEEETTHHHHHSSCGGGGTTC
T ss_pred CCEEEEEehhHHHHHCcCHHHHcCC
Confidence 6899999999999999999999997
No 123
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=74.14 E-value=13 Score=30.16 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=38.8
Q ss_pred EEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHh
Q 022983 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88 (289)
Q Consensus 30 ~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~ 88 (289)
.++++|.+ ++|+.++..+..++|.++++++|++...++.+ .....+...+..
T Consensus 31 ~Ll~~~~~---~~I~~~S~N~~~~lg~~~~~~lG~~l~~ll~~----~~~~~l~~~l~~ 82 (327)
T 4e04_A 31 LLLALAAD---MTIVAGSDNLPELTGLAIGALIGRSAADVFDS----ETHNRLTIALAE 82 (327)
T ss_dssp EEEEECTT---CBEEEEETTHHHHHSCCHHHHTTCBHHHHBCH----HHHHHHHHHHHS
T ss_pred EEEEEcCC---CeEEEEcccHHHHhCCChHhhcCCCHHHHcCH----HHHHHHHHHhhc
Confidence 35566755 99999999999999999999999998877643 333444555443
No 124
>4ew7_A Conjugative transfer: regulation; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology; 1.67A {Salmonella enterica subsp}
Probab=74.05 E-value=5.1 Score=26.15 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=24.6
Q ss_pred HhhcccccEEEeCCCCCCCCEEEecHHHHHhh
Q 022983 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLT 277 (289)
Q Consensus 246 ~~e~~~~~i~i~d~~~~~~~i~~vN~~f~~~t 277 (289)
.-.+++..+.+-.. ..+|+|+|-+|.+++
T Consensus 25 iY~nSPVpVCVRNq---~RkilYaN~aF~elF 53 (127)
T 4ew7_A 25 IYKNSPVPVCVRNQ---SRKIIYANGAFIELF 53 (127)
T ss_dssp HHTTCSSCEEEECT---TSCEEEECHHHHHHT
T ss_pred hhcCCCccEEEecc---cceEEEecchHHHHh
Confidence 45667788888888 889999999999994
No 125
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=72.38 E-value=27 Score=25.87 Aligned_cols=96 Identities=8% Similarity=0.072 Sum_probs=56.1
Q ss_pred HHHHHHHHhhCCC--EEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCCeEE
Q 022983 17 TLWVHEALDELPD--SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (289)
Q Consensus 17 ~~~l~~~~~~~~~--~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (289)
...|..+....+. .+++.|.+ |.++..++ ....+. ...+. ..+..++..+..+-.
T Consensus 57 ~~~L~~~~~~~~~~~~i~i~d~~---G~~~~~~~----------~~~~~~------~~~~r----~~f~~a~~~~~~~is 113 (217)
T 4dah_A 57 QSILEKTFDSEPRFSGLYFLNAK---GDVTASTT----------ELKTKV------NLADR----SFFIKAKETKKTVIS 113 (217)
T ss_dssp HHHHHHHHTTCTTEEEEEEEETT---CBEEEESS----------CCSSCC------BCTTS----HHHHHHHHHCSCEEC
T ss_pred HHHHHHHHhcCCcccEEEEECCC---CcEEEecC----------CCCCCC------Ccchh----HHHHHHHhcCCcEEe
Confidence 3455666665554 67889999 99887543 000111 11122 233445555665443
Q ss_pred EEEEEecCCCEEEEEEEEEEeecCCCCcEEEEEEEEecccccHH
Q 022983 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (289)
Q Consensus 95 e~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~ 138 (289)
+...-...|. ++.....|+.+ .+|.+.|+++...++....+
T Consensus 114 ~~~~~~~~g~--~~i~ia~pi~~-~~g~~~Gvl~~~i~l~~l~~ 154 (217)
T 4dah_A 114 DSYSSRITGQ--PIFTICVPVLD-SKRNVTDYLVAAIQIDYLKN 154 (217)
T ss_dssp CCEECTTTCS--EEEEEEEEEEC-TTSCEEEEEEEEEEHHHHHH
T ss_pred ceEEcCCCCC--EEEEEEEEEEC-CCCCEEEEEEEEEcHHHHHH
Confidence 3333233555 45567789987 68999999998888765544
No 126
>3c38_A Autoinducer 2 sensor kinase/phosphatase LUXQ; 2-component system, quorum sensing, histidine kinase, hydrolase, inner membrane, membrane; 2.30A {Vibrio cholerae} PDB: 3c30_A
Probab=61.00 E-value=34 Score=26.73 Aligned_cols=89 Identities=13% Similarity=0.204 Sum_probs=55.7
Q ss_pred HhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCCeEEEEEEEecCC
Q 022983 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDG 103 (289)
Q Consensus 24 ~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g 103 (289)
..++||--++.+.+ |. .|-++-..++|.+..++ ..+.+.+.....|.... ....+
T Consensus 77 p~~~pDfRFI~~~~---~~--~WdDgNa~FyGi~~~~L------------------~~L~~~v~~~~~Wh~~~--~~s~~ 131 (270)
T 3c38_A 77 LSNAPDLRFISSHD---NI--LWDDGNASFYGIAQQEL------------------NKLIRRVAISGNWHLVQ--TPSEG 131 (270)
T ss_dssp GGGCCSEEEEEETT---EE--EEECSCGGGGTCCHHHH------------------HHHHHHSCSSSSCEEEE--ECCSS
T ss_pred ccCCCcEEEEEeCC---ce--EEECCCCceeCCCHHHH------------------HHHHhhcccCCceEEEE--eccCC
Confidence 45688888888876 53 23444445555544222 33444444555565442 34667
Q ss_pred CEEEEEEEEEEeecCCCCcEEEEEEEEecccccH
Q 022983 104 TPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137 (289)
Q Consensus 104 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k 137 (289)
..+++.++..|+.++.+|++.|++-.+..+...-
T Consensus 132 g~~~lLvRr~pIid~~TGEVlG~Ly~gvVLnnNf 165 (270)
T 3c38_A 132 KSVHILMRRSSLIEAGTGQVVGYLYVGIVLNDNF 165 (270)
T ss_dssp SCEEEEEEEEEECCCC-CCCCEEEEEEEECTTCH
T ss_pred CceEEEEEccceecCCCCcEEEEEEEEEEecCcH
Confidence 7788899999998767899999877666655443
No 127
>2hje_A Autoinducer 2 sensor kinase/phosphatase LUXQ; PER/ARNT/simple-minded (PAS) fold, autoinducer-2 (AI-2), quorum sensing, histidine sensor kinase; 1.70A {Vibrio harveyi} SCOP: d.110.6.3 PDB: 2hj9_C 1zhh_B*
Probab=60.33 E-value=53 Score=24.81 Aligned_cols=87 Identities=11% Similarity=0.046 Sum_probs=56.1
Q ss_pred HhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCCeEEEEEEEecCC
Q 022983 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDG 103 (289)
Q Consensus 24 ~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g 103 (289)
..++|+--++.+.+ + ++|.++-..++|.++.++ ..+.+.+.....|.... ....+
T Consensus 58 p~~~pDfRFI~~~~---~--~~WdDgNa~FyGi~~~~L------------------~~L~~~v~~~~~Wh~~~--~~s~~ 112 (221)
T 2hje_A 58 PSHTPEFRFLTDHK---G--IIWDDGNAHFYGVNDLIL------------------DSLANRVSFSNNWYYIN--VMTSI 112 (221)
T ss_dssp GGGCCSEEEEECSS---S--EEEECSGGGGGTCCHHHH------------------HHHHHHCCSSSSCEEEE--EEETT
T ss_pred cCCCCcEEEEEeCC---c--eEEECCCccccccCHHHH------------------HHHHhhhcccCceEEEE--eccCC
Confidence 55788988888876 5 334555556666654332 33344444555565442 34567
Q ss_pred CEEEEEEEEEEeecCCCCcEEEEEEEEecccc
Q 022983 104 TPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135 (289)
Q Consensus 104 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe 135 (289)
..+++.++-.|+.++.+|++.|++-++.-+..
T Consensus 113 g~~~lLvRR~pIi~~~tGeVlG~Ly~gvVLnn 144 (221)
T 2hje_A 113 GSRHMLVRRVPILDPSTGEVLGFSFNAVVLDN 144 (221)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEEEEEEEECTT
T ss_pred CceEEEEEccceecCCCCcEEEEEEEEEEecC
Confidence 77889999999987678999998666554443
No 128
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=57.53 E-value=4.9 Score=32.93 Aligned_cols=41 Identities=10% Similarity=0.042 Sum_probs=33.9
Q ss_pred EEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCC
Q 022983 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72 (289)
Q Consensus 30 ~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~ 72 (289)
.+++++.+ +++|+.++..+..++|.++++++|++...++.+
T Consensus 54 ~LL~l~~~--~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~~ 94 (343)
T 3s7o_A 54 ALLTADGH--SGEVLQMSLNAATFLGQEPTVLRGQTLAALLPE 94 (343)
T ss_dssp EEEEEETT--TCBEEEEETTHHHHHSSCHHHHTTCBHHHHSTT
T ss_pred EEEEEECC--CCEEEEEcccHHHHhCcChHHHcCCCHHHHHhH
Confidence 34556652 389999999999999999999999998887764
No 129
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=46.04 E-value=18 Score=29.53 Aligned_cols=25 Identities=8% Similarity=-0.105 Sum_probs=23.8
Q ss_pred CCCEEEecHHHHHhhCCChHhHhhc
Q 022983 263 DMPMVYASDAFLKLTGAQIFTKITR 287 (289)
Q Consensus 263 ~~~i~~vN~~f~~~tGys~~E~~G~ 287 (289)
+++|+++.....+++|.+.++++|+
T Consensus 62 ~~~I~~~S~N~~~~lg~~~~~llG~ 86 (343)
T 3s7o_A 62 SGEVLQMSLNAATFLGQEPTVLRGQ 86 (343)
T ss_dssp TCBEEEEETTHHHHHSSCHHHHTTC
T ss_pred CCEEEEEcccHHHHhCcChHHHcCC
Confidence 7899999999999999999999997
No 130
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=41.89 E-value=58 Score=28.28 Aligned_cols=36 Identities=17% Similarity=0.132 Sum_probs=29.8
Q ss_pred EEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCC-ccC
Q 022983 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM-FQG 71 (289)
Q Consensus 31 i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~-l~~ 71 (289)
+++++.+ ++|+.++..+..++|.++ ++|++... ++.
T Consensus 29 Ll~l~~~---~~I~~~S~N~~~~lg~~~--~lG~~l~~~ll~ 65 (505)
T 3nhq_A 29 LVTLRAD---GMVLAASENIQALLGFVA--SPGSYLTQEQVG 65 (505)
T ss_dssp EEEECTT---SBEEEEETTHHHHHSSCC--CTTCBCCHHHHH
T ss_pred EEEEcCC---CeEEEEcccHHHHhCccc--ccCCchhhhhCC
Confidence 4556666 999999999999999988 89998776 653
No 131
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=40.64 E-value=26 Score=28.50 Aligned_cols=31 Identities=35% Similarity=0.461 Sum_probs=26.9
Q ss_pred EEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhc
Q 022983 254 FVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITR 287 (289)
Q Consensus 254 i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~ 287 (289)
+++.|+ +++|+++.....+++|-+.++++|+
T Consensus 32 Ll~~~~---~~~I~~~S~N~~~~lg~~~~~~lG~ 62 (327)
T 4e04_A 32 LLALAA---DMTIVAGSDNLPELTGLAIGALIGR 62 (327)
T ss_dssp EEEECT---TCBEEEEETTHHHHHSCCHHHHTTC
T ss_pred EEEEcC---CCeEEEEcccHHHHhCCChHhhcCC
Confidence 344455 8999999999999999999999996
No 132
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=38.77 E-value=9.4 Score=33.32 Aligned_cols=41 Identities=15% Similarity=0.109 Sum_probs=32.8
Q ss_pred EEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCC
Q 022983 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72 (289)
Q Consensus 30 ~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~ 72 (289)
.+++++.. +++|+.++..+..++|.++++++|++...++.+
T Consensus 31 ~LLal~~~--~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~~ 71 (520)
T 3zq5_A 31 LVVVLQEP--DLTISQISANCTGILGRSPEDLLGRTLGEVFDS 71 (520)
T ss_dssp EEEEEETT--TTEEEEEETTHHHHHSCCHHHHTTSBHHHHCEE
T ss_pred EEEEEECC--CCEEEEEcccHHHHhCcChHHHcCCCHHHHcCH
Confidence 34556652 289999999999999999999999987766543
No 133
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=35.18 E-value=37 Score=24.83 Aligned_cols=32 Identities=9% Similarity=-0.106 Sum_probs=26.1
Q ss_pred ccEEEeCCCCCCC--CEEEecHHHHHhhCCChHhHhh
Q 022983 252 QSFVLIDPHLPDM--PMVYASDAFLKLTGAQIFTKIT 286 (289)
Q Consensus 252 ~~i~i~d~~~~~~--~i~~vN~~f~~~tGys~~E~~G 286 (289)
-.+.|.|. .| .+...|+..++|+|.+++|+..
T Consensus 81 l~~~i~D~---Tg~~~~t~F~~~ae~ilG~sA~el~~ 114 (181)
T 1l1o_C 81 LSVNIADF---QENQWVTCFQESAEAILGQNAAYLGE 114 (181)
T ss_dssp EEEEEECS---SCEEEEEEEHHHHHHHHSSCHHHHHH
T ss_pred EEEEEEeC---CCCEEEEEEhHHHHHHhCCCHHHHHH
Confidence 34668887 44 4999999999999999999863
No 134
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=29.31 E-value=65 Score=25.63 Aligned_cols=37 Identities=11% Similarity=0.082 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhC
Q 022983 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSG 55 (289)
Q Consensus 16 ~~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G 55 (289)
...-++.+++..+...+++|.. ..++.+|+++..+++
T Consensus 97 v~p~l~~lLd~l~~PA~V~d~~---~dvla~N~~a~~L~~ 133 (292)
T 3pxp_A 97 SLQYLIDMIRNMNVPAFVTDQY---VNIIAANMITIRFFN 133 (292)
T ss_dssp HHHHHHHHHHTCSSCEEEEETT---CBEEEEEHHHHHHHT
T ss_pred cCHHHHHHHHhcCCCeEEECCC---CCHhhcCHHHHHHhC
Confidence 3345777888888899999999 999999999999996
No 135
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=29.05 E-value=42 Score=29.28 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=23.8
Q ss_pred CCCEEEecHHHHHhhCCChHhHhhc
Q 022983 263 DMPMVYASDAFLKLTGAQIFTKITR 287 (289)
Q Consensus 263 ~~~i~~vN~~f~~~tGys~~E~~G~ 287 (289)
+++|+++.....+++|.+.++++|+
T Consensus 39 ~~~I~~~S~N~~~~lg~~~~~llG~ 63 (520)
T 3zq5_A 39 DLTISQISANCTGILGRSPEDLLGR 63 (520)
T ss_dssp TTEEEEEETTHHHHHSCCHHHHTTS
T ss_pred CCEEEEEcccHHHHhCcChHHHcCC
Confidence 7899999999999999999999997
No 136
>2h8b_A Insulin-like 3; insulin/relaxin suparfamily fold, hormone/growth factor complex; NMR {Synthetic} PDB: 2k6t_A 2k6u_A
Probab=21.93 E-value=54 Score=15.04 Aligned_cols=19 Identities=21% Similarity=0.086 Sum_probs=14.8
Q ss_pred ecHHH-HHhhCCChHhHhhc
Q 022983 269 ASDAF-LKLTGAQIFTKITR 287 (289)
Q Consensus 269 vN~~f-~~~tGys~~E~~G~ 287 (289)
.||+- +=++|-+++++++-
T Consensus 4 tnpa~~CClsGCt~QDLL~l 23 (26)
T 2h8b_A 4 TNPARYCCLSGCTQQDLLTL 23 (26)
T ss_dssp SCHHHHHHHTCBCHHHHHTT
T ss_pred CchhHHHHhcCCcHHHHHhh
Confidence 46754 77999999998863
No 137
>3mxn_A RECQ-mediated genome instability protein 1; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_A 3nbh_A
Probab=21.26 E-value=90 Score=22.19 Aligned_cols=33 Identities=9% Similarity=0.075 Sum_probs=24.5
Q ss_pred ccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHh
Q 022983 252 QSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKI 285 (289)
Q Consensus 252 ~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~ 285 (289)
-++.|+|.+. --.+-..++..+++.|+|..|+.
T Consensus 62 l~a~IsDGS~-~LdV~f~~~VLt~lIGfS~~E~~ 94 (157)
T 3mxn_A 62 ITAKVSDGTA-YLDVDFVDEILTSLIGFSVPEMK 94 (157)
T ss_dssp CEEEEECSSC-EEEEEECHHHHHHHHSCCHHHHH
T ss_pred EEEEEeCCce-eEEEEeeHHHHHhhhCCCHHHHH
Confidence 3567888722 22377778899999999999863
No 138
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=20.69 E-value=2.7e+02 Score=20.74 Aligned_cols=97 Identities=11% Similarity=0.137 Sum_probs=53.5
Q ss_pred HHHHHHHHHhhCCC--EEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHH--hCCC
Q 022983 16 YTLWVHEALDELPD--SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIR--EERP 91 (289)
Q Consensus 16 ~~~~l~~~~~~~~~--~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~--~~~~ 91 (289)
....|.......+. .+++.|.+ |. +..+.. .. ..+.+ ..+. ..+..++. .+..
T Consensus 56 ~~~~L~~~~~~~~~~~~i~i~d~~---G~-~~~s~~------~~---~~~~~------~~~r----~~f~~a~~~~~~~~ 112 (254)
T 3lif_A 56 FNERLRALADNLPQLSDVAILDAD---GQ-LTYASV------KP---VPALD------NSDR----SYFRYHRANDDHTL 112 (254)
T ss_dssp HHHHHHHHHHHCTTEEEEEEECTT---SB-EEEESS------SS---EECCB------CTTS----HHHHHHHHCCCCCC
T ss_pred HHHHHHHHHhcCCccceEEEECCC---CC-EecCCC------CC---CCCCC------cccH----HHHHHHHhCCCCCe
Confidence 34556666666665 58889999 98 443220 00 01111 1112 23345554 3444
Q ss_pred eEEEEEEEecCCCEEEEEEEEEEeecCCCCcEEEEEEEEecccccHH
Q 022983 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (289)
Q Consensus 92 ~~~e~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~ 138 (289)
+..+...-...|. |+.....|+.+ .+|.+.+++++..++....+
T Consensus 113 ~is~p~~~~~~g~--~~i~~~~pi~~-~~g~~~Gvl~~~i~l~~l~~ 156 (254)
T 3lif_A 113 LITGPIQSRTSGV--WVFVVSRRLET-TDGKFFGVVVATIESEYFST 156 (254)
T ss_dssp EEEEEEECTTTCC--EEEEEEEEEEC-TTCCEEEEEEEEECHHHHHH
T ss_pred EECCceecCCCCc--EEEEEEeeeeC-CCCCEeEEEEEEECHHHHHH
Confidence 4444332223454 45566789987 68999999988888754443
No 139
>2joi_A Hypothetical protein TA0095; structural genomics, COG4004 orthologous group, structural genomics consortium, SGC, unknown function; NMR {Thermoplasma acidophilum}
Probab=20.21 E-value=42 Score=22.42 Aligned_cols=16 Identities=25% Similarity=0.258 Sum_probs=12.2
Q ss_pred cHHH----HHhhCCChHhHh
Q 022983 270 SDAF----LKLTGAQIFTKI 285 (289)
Q Consensus 270 N~~f----~~~tGys~~E~~ 285 (289)
|..| ++.||||..|=+
T Consensus 93 nKrfrdFLe~aTGYTAKER~ 112 (118)
T 2joi_A 93 VRTYNDFIEKLTGYSAKERK 112 (118)
T ss_dssp HHHHHHHHHHHHCCCGGGHH
T ss_pred HHHHHHHHHHHhCccHHHHH
Confidence 6665 568999998854
Done!