Query 022983
Match_columns 289
No_of_seqs 256 out of 3109
Neff 10.7
Searched_HMMs 13730
Date Mon Mar 25 14:23:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022983.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022983hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1n9la_ d.110.3.6 (A:) Putativ 99.9 5E-21 3.7E-25 131.9 15.9 108 27-135 2-109 (109)
2 d1bywa_ d.110.3.6 (A:) Erg pot 99.8 9.3E-19 6.8E-23 120.6 15.0 106 30-136 3-110 (110)
3 d1jnua_ d.110.3.6 (A:) Photore 99.8 7.9E-19 5.8E-23 119.7 14.1 103 30-133 2-104 (104)
4 d1ew0a_ d.110.3.2 (A:) Histidi 99.8 8.8E-19 6.4E-23 124.5 12.6 124 4-134 3-130 (130)
5 d1p97a_ d.110.3.7 (A:) Hypoxia 99.7 7.8E-18 5.7E-22 116.7 7.9 108 28-138 4-113 (114)
6 d1v9ya_ d.110.3.2 (A:) Direct 99.6 1.6E-15 1.2E-19 104.3 12.5 107 20-132 3-113 (113)
7 d1xj3a1 d.110.3.2 (A:154-259) 99.6 9.4E-16 6.8E-20 104.3 10.4 102 29-136 1-106 (106)
8 d1nwza_ d.110.3.1 (A:) Photoac 99.6 1.6E-14 1.1E-18 101.2 10.8 109 17-133 16-125 (125)
9 d1mzua_ d.110.3.1 (A:) PYP dom 99.5 1.1E-13 7.8E-18 94.5 11.1 94 20-117 5-100 (110)
10 d1ll8a_ d.110.3.5 (A:) N-termi 99.4 2.2E-13 1.6E-17 93.7 5.1 104 25-134 5-113 (114)
11 d1n9la_ d.110.3.6 (A:) Putativ 99.2 3.3E-12 2.4E-16 86.9 4.5 39 250-288 2-40 (109)
12 d1oj5a_ d.110.3.8 (A:) PAS dom 99.1 1.4E-11 1.1E-15 83.4 4.5 95 32-129 6-103 (109)
13 d1jnua_ d.110.3.6 (A:) Photore 99.1 1.9E-11 1.4E-15 82.2 4.8 37 252-288 1-37 (104)
14 d1v9ya_ d.110.3.2 (A:) Direct 99.0 2.6E-10 1.9E-14 77.5 5.0 43 243-288 3-45 (113)
15 d1mzua_ d.110.3.1 (A:) PYP dom 98.9 3.1E-10 2.2E-14 76.9 4.4 42 244-288 6-47 (110)
16 d1bywa_ d.110.3.6 (A:) Erg pot 98.8 1.4E-09 1E-13 73.6 4.2 37 252-288 2-38 (110)
17 d1ew0a_ d.110.3.2 (A:) Histidi 98.8 2.2E-09 1.6E-13 74.8 4.9 43 243-288 18-60 (130)
18 d1nwza_ d.110.3.1 (A:) Photoac 98.7 3.9E-09 2.8E-13 73.1 4.6 43 243-288 19-61 (125)
19 d1ll8a_ d.110.3.5 (A:) N-termi 98.4 4.3E-08 3.1E-12 66.4 3.0 38 249-288 6-43 (114)
20 d1p97a_ d.110.3.7 (A:) Hypoxia 98.0 1E-06 7.6E-11 59.2 2.7 33 253-288 8-40 (114)
21 d2oola2 d.110.3.9 (A:26-139) S 97.3 0.00019 1.4E-08 47.8 5.1 42 30-74 19-61 (114)
22 d1oj5a_ d.110.3.8 (A:) PAS dom 97.1 0.00017 1.3E-08 47.5 3.8 32 254-288 5-37 (109)
23 d2oola2 d.110.3.9 (A:26-139) S 95.3 0.0061 4.5E-07 40.0 3.4 26 263-288 27-52 (114)
24 d2veaa3 d.110.3.9 (A:4-130) Ph 94.8 0.019 1.4E-06 38.3 4.8 43 30-75 28-71 (127)
25 d2o9ca2 d.110.3.9 (A:4-130) Ba 92.1 0.085 6.2E-06 35.0 4.3 39 30-71 37-76 (127)
26 d2o9ca2 d.110.3.9 (A:4-130) Ba 85.6 0.39 2.9E-05 31.6 3.7 26 263-288 45-70 (127)
27 d3c2wa3 d.110.3.9 (A:5-117) Ba 82.4 1.9 0.00014 27.4 6.0 70 31-109 25-94 (113)
28 d2veaa3 d.110.3.9 (A:4-130) Ph 75.1 0.86 6.3E-05 29.8 2.5 25 263-287 36-60 (127)
29 d3c2wa3 d.110.3.9 (A:5-117) Ba 44.4 8.2 0.0006 24.2 2.9 31 253-287 24-54 (113)
30 d1smpi_ b.61.2.1 (I:) Metallop 36.8 10 0.00076 23.0 2.3 24 248-274 59-83 (100)
31 d1uxja1 c.2.1.5 (A:2-143) Mala 34.1 16 0.0012 23.8 3.2 45 16-64 98-142 (142)
32 d2hjea1 d.110.6.3 (A:52-270) A 30.0 84 0.0061 22.0 8.6 91 24-139 57-147 (219)
33 d1i0za1 c.2.1.5 (A:1-160) Lact 27.0 31 0.0023 22.9 3.7 44 16-63 117-160 (160)
34 d1kcfa1 a.140.2.1 (A:3-38) Mit 25.4 10 0.00075 17.2 0.6 17 272-288 9-29 (36)
35 d1mlda1 c.2.1.5 (A:1-144) Mala 23.4 13 0.00094 24.4 1.1 49 15-63 96-144 (144)
36 d1ldna1 c.2.1.5 (A:15-162) Lac 23.2 39 0.0028 21.9 3.6 45 16-64 103-147 (148)
37 d1pzga1 c.2.1.5 (A:14-163) Lac 23.0 43 0.0031 21.9 3.8 45 16-64 110-154 (154)
38 d1o6za1 c.2.1.5 (A:22-162) Mal 22.1 27 0.002 22.7 2.5 44 16-63 99-142 (142)
39 d1y6ja1 c.2.1.5 (A:7-148) Lact 20.8 34 0.0025 22.1 2.9 44 17-64 98-141 (142)
40 d1ojua1 c.2.1.5 (A:22-163) Mal 20.6 30 0.0022 22.4 2.5 44 16-63 98-141 (142)
No 1
>d1n9la_ d.110.3.6 (A:) Putative blue light receptor, phot-lov1 domain {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=99.87 E-value=5e-21 Score=131.94 Aligned_cols=108 Identities=41% Similarity=0.805 Sum_probs=99.4
Q ss_pred CCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCCeEEEEEEEecCCCEE
Q 022983 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPF 106 (289)
Q Consensus 27 ~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~ 106 (289)
++++++++|...++|+|+|+|++|++++||+++|++|+++..+.++...+.....+...+..+..+..++..+++||+.+
T Consensus 2 i~~~~vi~Da~~pdg~Ii~vN~a~~~~~Gy~~~El~G~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~kdG~~~ 81 (109)
T d1n9la_ 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPF 81 (109)
T ss_dssp CSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEE
T ss_pred ccceEEEEeCCCCCCeEEEEcHHHHHHHCcCHHHHcCCcceeeecccCCHHHhhhhhhHhhcCCceeeeEEEEecCCeEE
Confidence 46889999965455999999999999999999999999998888888888888889999999999999999999999999
Q ss_pred EEEEEEEEeecCCCCcEEEEEEEEecccc
Q 022983 107 WMLFKMSLVFGKEDGRATHFVAVQVPIVS 135 (289)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~~~~~~~DITe 135 (289)
|+.+++.|+++ ++|.+.+++++.+|||.
T Consensus 82 w~~~~~~pi~d-~~G~v~~~v~~~~DITa 109 (109)
T d1n9la_ 82 WNLLTVTPIKT-PDGRVSKFVGVQVDVTS 109 (109)
T ss_dssp EEEEEEEEEEC-TTSCEEEEEEEEEECCC
T ss_pred EEEEEEEEEEC-CCCCEEEEEEEEEECCC
Confidence 99999999999 89999999999999994
No 2
>d1bywa_ d.110.3.6 (A:) Erg potassium channel, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.80 E-value=9.3e-19 Score=120.60 Aligned_cols=106 Identities=27% Similarity=0.519 Sum_probs=93.3
Q ss_pred EEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCC--ccCCCCCHHHHHHHHHHHHhCCCeEEEEEEEecCCCEEE
Q 022983 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM--FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFW 107 (289)
Q Consensus 30 ~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~ 107 (289)
.++++|.+.+|..|+|+|++|++++||++++++|+++.. +.+++..+.....+...+..+..+..+++.++++|+.+|
T Consensus 3 ~f~i~~~~~~d~~I~~~N~a~~~l~G~~~~eiiG~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~g~~~w 82 (110)
T d1bywa_ 3 KFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCFL 82 (110)
T ss_dssp EEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEE
T ss_pred eEEEEcCCCCCCEEEEEcHHHHHHhCCCHHHhcccCcccccceeeheecccccccchhhcccccccceeeeeecccceee
Confidence 356778654558899999999999999999999998654 335666777888888999999999999999999999999
Q ss_pred EEEEEEEeecCCCCcEEEEEEEEeccccc
Q 022983 108 MLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (289)
Q Consensus 108 ~~~~~~~~~~~~~g~~~~~~~~~~DITe~ 136 (289)
+.+++.|+.+ ++|.+.+++++++|||+|
T Consensus 83 ~~~~~~pi~d-~~G~v~~~i~~~~DITer 110 (110)
T d1bywa_ 83 CLVDVVPVKN-EDGAVIMFILNFEVVMEK 110 (110)
T ss_dssp EEEEEEEEEC-TTCCEEEEEEEEEEEEEC
T ss_pred eeeeEEEEEC-CCCCEEEEEEEEEECCCC
Confidence 9999999999 899999999999999986
No 3
>d1jnua_ d.110.3.6 (A:) Photoreceptor phy3 flavin-binding domain, lov2 {Maidenhair fern (Adiantum capillus-veneris) [TaxId: 13818]}
Probab=99.80 E-value=7.9e-19 Score=119.70 Aligned_cols=103 Identities=41% Similarity=0.824 Sum_probs=95.4
Q ss_pred EEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEE
Q 022983 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWML 109 (289)
Q Consensus 30 ~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~ 109 (289)
.++++|+..++|+|+|+|++|++++||++++++|+++..+.++...+.....+...+..+..+..+++.++++|+.+|+.
T Consensus 2 ~fvi~d~~~pd~~I~y~N~a~~~~~G~s~~e~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~~~~ 81 (104)
T d1jnua_ 2 SFVITDPRLPDNPIIFASDRFLELTEYTREEVLGNNCRFLQGRGTDRKAVQLIRDAVKEQRDVTVQVLNYTKGGRAFWNL 81 (104)
T ss_dssp EEEEECTTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEE
T ss_pred eEEEEcCCCCCCEEEEEcHHHHHHHCcCHHHHCCccceeccccccchHHHhhhhhhhhcCceeEeEEEEEecccceEEEE
Confidence 36778865456999999999999999999999999998888888888899999999999999999999999999999999
Q ss_pred EEEEEeecCCCCcEEEEEEEEecc
Q 022983 110 FKMSLVFGKEDGRATHFVAVQVPI 133 (289)
Q Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~DI 133 (289)
+++.|+++ ++|++.+++++.+||
T Consensus 82 ~~~~pi~d-~~G~v~~~i~i~~DI 104 (104)
T d1jnua_ 82 FHLQVMRD-ENGDVQYFIGVQQEM 104 (104)
T ss_dssp EEEEEECT-TTSSCCEEEEEEEEC
T ss_pred EEEEEEEC-CCCCEEEEEEEEEcC
Confidence 99999999 899999999999997
No 4
>d1ew0a_ d.110.3.2 (A:) Histidine kinase FixL heme domain {Rhizobium meliloti [TaxId: 382]}
Probab=99.79 E-value=8.8e-19 Score=124.51 Aligned_cols=124 Identities=16% Similarity=0.222 Sum_probs=102.4
Q ss_pred ccchHHHhhchHHHHHHHHHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHH
Q 022983 4 QLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83 (289)
Q Consensus 4 ~l~~~~~~l~~~~~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~ 83 (289)
++.+.++.+. +++++++.++++++++++++|.+ |+|+++|+++++++||++++++|+++..+.++.........+.
T Consensus 3 ~l~~~e~~l~-~~e~~~~~i~~~~~~~i~~~d~~---g~i~~~N~~~~~l~Gy~~~el~g~~~~~~~~~~~~~~~~~~~~ 78 (130)
T d1ew0a_ 3 HMLETEDVVR-ARDAHLRSILDTVPDATVVSATD---GTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGYLQ 78 (130)
T ss_dssp HHHHHHHHHH-HHTSCHHHHHTTCSSEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTGGGHHHHHH
T ss_pred hHHHHHHHHH-HHHHHHHHHHHcCCCeEEEEeCC---ccEEEEHHHHHHhhcCCHHHhcCCccccccccchhHHHHHHHH
Confidence 3455666666 77788999999999999999999 9999999999999999999999999888887776666666666
Q ss_pred HHHHhCCC----eEEEEEEEecCCCEEEEEEEEEEeecCCCCcEEEEEEEEeccc
Q 022983 84 EAIREERP----IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (289)
Q Consensus 84 ~~~~~~~~----~~~e~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 134 (289)
..+..+.. ...++...++||..+|+.+++.|+.+ +. . ..++++++|||
T Consensus 79 ~~~~~~~~~~~~~~~e~~~~~~dG~~~~v~~~~~~i~~-~~-~-~~~~~i~rDIT 130 (130)
T d1ew0a_ 79 RYMATGEKRIIGIDRVVSGQRKDGSTFPMKLAVGEMRS-GG-E-RFFTGFIRDLT 130 (130)
T ss_dssp HHHHHCCCSSTTSCEEEEEECTTSCEEEEEEEEEEEEE-TT-E-EEEEEEEEECC
T ss_pred HHHHhCCCccccceeeEEEEcCCCCEEEEEEEEEEEEE-CC-e-EEEEEEEEECC
Confidence 66655433 45678888999999999999999987 33 3 34788999998
No 5
>d1p97a_ d.110.3.7 (A:) Hypoxia-inducible factor Hif2a, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.71 E-value=7.8e-18 Score=116.66 Aligned_cols=108 Identities=8% Similarity=0.180 Sum_probs=92.3
Q ss_pred CCEEEE--EeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCCeEEEEEEEecCCCE
Q 022983 28 PDSFTI--TDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTP 105 (289)
Q Consensus 28 ~~~i~~--~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~ 105 (289)
....++ .+.+ |+++|+|+++++++||++++++|+++..+.+|++.+.....+...+..+..+..+++++++||+.
T Consensus 4 d~~~fi~r~~~d---G~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~ed~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~ 80 (114)
T d1p97a_ 4 DSKTFLSRHSMD---MKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGY 80 (114)
T ss_dssp CCEEEEEEECTT---TSCSEECTTHHHHTSSCHHHHTTSCHHHHSCSSSHHHHHHHHHHHTTTSEEEEEEEEEECTTSCE
T ss_pred CcCEEEEEECCC---CcEEEECHHHHHHcCCCccccccccccccccccccccceeeeeecccccceeecceeeeeecCcc
Confidence 334444 5888 99999999999999999999999998888888877776666666666666678899999999999
Q ss_pred EEEEEEEEEeecCCCCcEEEEEEEEecccccHH
Q 022983 106 FWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (289)
Q Consensus 106 ~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~ 138 (289)
+|+.++..|+.++.+|.+.+++++.+|||++|+
T Consensus 81 ~wv~~~~~~~~~~~~~~~~~ii~~~~dite~k~ 113 (114)
T d1p97a_ 81 VWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEK 113 (114)
T ss_dssp EEEEEEEEEEECTTTCSEEEEEEEEEEEEEEEC
T ss_pred eEEEEEEEEEEeCCCCCEEEEEEEEEECChhhc
Confidence 999999999997236899999999999999986
No 6
>d1v9ya_ d.110.3.2 (A:) Direct oxygen sensor protein, DOS {Escherichia coli [TaxId: 562]}
Probab=99.64 E-value=1.6e-15 Score=104.34 Aligned_cols=107 Identities=22% Similarity=0.276 Sum_probs=82.7
Q ss_pred HHHHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhC----CCeEEE
Q 022983 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE----RPIEVN 95 (289)
Q Consensus 20 l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~e 95 (289)
|..++++++++++++|.+ |+|+++|+++++++||++++++|++...+.++.........+....... .....+
T Consensus 3 ~~~~~e~~~d~i~~~d~~---g~i~~~N~~~~~l~Gy~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 79 (113)
T d1v9ya_ 3 FFPALEQNMMGAVLINEN---DEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMSRE 79 (113)
T ss_dssp HHHHHHTCSSEEEEECTT---SBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTTHHHHHHHHHC----------CE
T ss_pred HHHHHHcCcCcEEEEeCC---CCEEEEchhHhhhhccchhhhcCcceeccccccccccccccccccccccccccccccee
Confidence 678999999999999999 9999999999999999999999999877776555444444434333222 234557
Q ss_pred EEEEecCCCEEEEEEEEEEeecCCCCcEEEEEEEEec
Q 022983 96 LLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVP 132 (289)
Q Consensus 96 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~D 132 (289)
...++++|+.+|+.+++.|+.+ +.+ ..++++++|
T Consensus 80 ~~~~~~dG~~~~v~~~~~~i~~-~~~--~~~~~v~rD 113 (113)
T d1v9ya_ 80 LQLEKKDGSKIWTRFALSKVSA-EGK--VYYLALVRD 113 (113)
T ss_dssp EEEECTTSCEEEEEEEEEEEEE-TTE--EEEEEEEEC
T ss_pred eeeccccceeEEEEEEEEEEEE-CCe--EEEEEEEEC
Confidence 7789999999999999999997 444 347788877
No 7
>d1xj3a1 d.110.3.2 (A:154-259) Histidine kinase FixL heme domain {Bradyrhizobium japonicum [TaxId: 375]}
Probab=99.63 E-value=9.4e-16 Score=104.29 Aligned_cols=102 Identities=19% Similarity=0.193 Sum_probs=82.3
Q ss_pred CEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCC----CeEEEEEEEecCCC
Q 022983 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER----PIEVNLLNYKKDGT 104 (289)
Q Consensus 29 ~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~e~~~~~~~g~ 104 (289)
+||+++|.+ |+|+++|+++++++||+.++++|+++..+.++.........+........ ....+....+++|.
T Consensus 1 dgi~~~D~~---G~I~~~N~a~~~l~Gy~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~ 77 (106)
T d1xj3a1 1 DAMIVIDGH---GIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGKRRDGT 77 (106)
T ss_dssp CCEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEEECTTSC
T ss_pred CEEEEECCC---CcEEEEcHHHHHHhhhchHhhcCCCcccccccccccchhhhhhhhhhhcccccccccceeeeeeccce
Confidence 589999999 99999999999999999999999998888777655555544444444332 24567888999999
Q ss_pred EEEEEEEEEEeecCCCCcEEEEEEEEeccccc
Q 022983 105 PFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (289)
Q Consensus 105 ~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~ 136 (289)
.+|+.+++.|+.+ +++ ..++++++||||.
T Consensus 78 ~~~v~~~~~~~~~-~~~--~~~~~~~~DITE~ 106 (106)
T d1xj3a1 78 TFPMHLSIGEMQS-GGE--PYFTGFVRDLTEH 106 (106)
T ss_dssp EEEEEEEEEEEEE-TTE--EEEEEEEEECHHH
T ss_pred EEEEEEEEEEEEE-CCe--EEEEEEEEeCCCC
Confidence 9999999999987 443 4578999999973
No 8
>d1nwza_ d.110.3.1 (A:) Photoactive yellow protein, PYP {Ectothiorhodospira halophila [TaxId: 1053]}
Probab=99.56 E-value=1.6e-14 Score=101.21 Aligned_cols=109 Identities=14% Similarity=0.082 Sum_probs=86.7
Q ss_pred HHHHHHHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCC-CCCHHHHHHHHHHHHhCCCeEEE
Q 022983 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGP-RTNRRTIMEIREAIREERPIEVN 95 (289)
Q Consensus 17 ~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~e 95 (289)
.+++..+++++|+|++++|.+ |+|+++|+++++++||++++++|+++..++.| ...+.+...+.+.+..+.....+
T Consensus 16 ~~~~d~~ld~~p~gi~~lD~~---G~i~~~N~a~~~l~G~~~~e~iG~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~ 92 (125)
T d1nwza_ 16 AKMDDGQLDGLAFGAIQLDGD---GNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGNLNTMF 92 (125)
T ss_dssp TTCCHHHHTTCSSEEEEEETT---CBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHhCCCccEEEEeCC---CCEEEEcHHHHHhhccchHhhcCCCHHHccCchhhhhheeeeceeeeecCCcceEE
Confidence 355678999999999999999 99999999999999999999999997655544 44455666778888888876666
Q ss_pred EEEEecCCCEEEEEEEEEEeecCCCCcEEEEEEEEecc
Q 022983 96 LLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133 (289)
Q Consensus 96 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DI 133 (289)
....+++|+.+|+.+++.+..+ |. .+..+++||
T Consensus 93 ~~~~~~~G~~~~v~v~l~~~~~---g~--~~~v~V~di 125 (125)
T d1nwza_ 93 EYTFDYQMTPTKVKVHMKKALS---GD--SYWVFVKRV 125 (125)
T ss_dssp EEEECTTSCCEEEEEEEEECSS---SS--EEEEEEEEC
T ss_pred EEEeccCCcEEEEEEEEEEecC---CC--EEEEEEEEC
Confidence 5667899999999999888754 33 233456665
No 9
>d1mzua_ d.110.3.1 (A:) PYP domain of sensor histidine kinase Ppr {Rhodospirillum centenum [TaxId: 34018]}
Probab=99.50 E-value=1.1e-13 Score=94.49 Aligned_cols=94 Identities=16% Similarity=0.057 Sum_probs=76.2
Q ss_pred HHHHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccC-CCCCHHHHHHHHHHHHhCCCeE-EEEE
Q 022983 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQG-PRTNRRTIMEIREAIREERPIE-VNLL 97 (289)
Q Consensus 20 l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~-~e~~ 97 (289)
+.++++++|++++++|.+ |+|+++|+++++|+||++++++|+++..++. +...+.+...+.+.+.++.... .++.
T Consensus 5 ~~A~ld~~p~gvi~~D~~---G~I~~~N~aa~~~~G~~~eellG~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~ 81 (110)
T d1mzua_ 5 GTAEFDALPVGAIQVDGS---GVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCTNIPAFSGRFMDGVTSGTLDARFDFV 81 (110)
T ss_dssp -CTTGGGCSSEEEEEETT---CBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHTSCCEEEEEEE
T ss_pred HHHHHhCCCcEEEEEcCC---CCEEEeHHHHHHHHcCCHHHHcCCCHHHhcCChhhhHHHHHHHHHHHhccccCcceEEE
Confidence 456899999999999999 9999999999999999999999999755444 4445566777788888877543 4443
Q ss_pred EEecCCCEEEEEEEEEEeec
Q 022983 98 NYKKDGTPFWMLFKMSLVFG 117 (289)
Q Consensus 98 ~~~~~g~~~~~~~~~~~~~~ 117 (289)
.+++|..+++.++..+...
T Consensus 82 -l~~~G~~~~v~v~~~~~~~ 100 (110)
T d1mzua_ 82 -FDFQMAPVRVQIRMQNAGV 100 (110)
T ss_dssp -EECSSCEEEEEEEEEECSS
T ss_pred -EecCCceEEEEEEEEEecC
Confidence 5789999999999888754
No 10
>d1ll8a_ d.110.3.5 (A:) N-terminal PAS domain of Pas kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.37 E-value=2.2e-13 Score=93.73 Aligned_cols=104 Identities=15% Similarity=0.141 Sum_probs=81.3
Q ss_pred hhCCCEEEEEeC-CCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCC----CeEEEEEEE
Q 022983 25 DELPDSFTITDP-SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER----PIEVNLLNY 99 (289)
Q Consensus 25 ~~~~~~i~~~d~-~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~e~~~~ 99 (289)
+.+.++|+++|. + |.|+++|+++++++||++++++|+++..+.++.+.......+...+..+. .+..++...
T Consensus 5 ~~~n~AI~~id~~~---G~I~~~N~a~~~l~Gy~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 81 (114)
T d1ll8a_ 5 PEFNKAIFTVDAKT---TEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDVVEALSEEHMEADGHAAVVFGTVVDII 81 (114)
T ss_dssp TTTTCEEEEEETTT---CBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTTHHHHHTTSSTTSSSSCSSCCCSSSEEEC
T ss_pred hhcCcEEEEEECCC---CEEEEECHHHHHhhcCCHHHHcCCCeeeecCcccHHHHHHHHHHHHhcCCCccceeeEEEEEE
Confidence 457789999994 6 99999999999999999999999999999887776655443334443332 122356778
Q ss_pred ecCCCEEEEEEEEEEeecCCCCcEEEEEEEEeccc
Q 022983 100 KKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (289)
Q Consensus 100 ~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 134 (289)
+++|..+|+.+++.++.. +|.. .++++++||+
T Consensus 82 ~~~G~~~pvevs~~~i~~--~~~~-~~l~vi~dV~ 113 (114)
T d1ll8a_ 82 SRSGEKIPVSVWMKRMRQ--ERRL-CCVVVLEPVE 113 (114)
T ss_dssp CTTCCCEEEECCEECCBS--SSSB-EEEEEEEECC
T ss_pred ccCCcEEEEEEEEEEEEE--CCeE-EEEEEEEECc
Confidence 999999999999999976 4554 4689999994
No 11
>d1n9la_ d.110.3.6 (A:) Putative blue light receptor, phot-lov1 domain {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=99.23 E-value=3.3e-12 Score=86.89 Aligned_cols=39 Identities=36% Similarity=0.641 Sum_probs=36.4
Q ss_pred ccccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhcc
Q 022983 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITRI 288 (289)
Q Consensus 250 ~~~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~~ 288 (289)
++++|+|+|++.||++|+|||++|+++|||+++|++||-
T Consensus 2 i~~~~vi~Da~~pdg~Ii~vN~a~~~~~Gy~~~El~G~~ 40 (109)
T d1n9la_ 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHN 40 (109)
T ss_dssp CSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSC
T ss_pred ccceEEEEeCCCCCCeEEEEcHHHHHHHCcCHHHHcCCc
Confidence 468999999988899999999999999999999999984
No 12
>d1oj5a_ d.110.3.8 (A:) PAS domain of steroid receptor coactivator 1A, NCo-A1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.14 E-value=1.4e-11 Score=83.38 Aligned_cols=95 Identities=13% Similarity=0.152 Sum_probs=73.6
Q ss_pred EEEeCCCCCccEEEccHHHHHHhCCCc-cccCCCCCCCccCCCCCHH--HHHHHHHHHHhCCCeEEEEEEEecCCCEEEE
Q 022983 32 TITDPSISGHPIVFASRGFLKMSGFSR-AEIIGRNGRMFQGPRTNRR--TIMEIREAIREERPIEVNLLNYKKDGTPFWM 108 (289)
Q Consensus 32 ~~~d~~~~~g~i~~~N~~~~~~~G~~~-~e~~g~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~ 108 (289)
.-.|.+ |+++++|+++++++||.+ ++++|+++..+++|++.+. ...........+.....+++++++||..+|+
T Consensus 6 trh~~~---g~~~~vd~~~~~~~gy~~~eelig~s~~~f~HPeD~~~~~~~~~~~~~~~~g~~~~~~yR~~~kdG~~vWv 82 (109)
T d1oj5a_ 6 TKQDTT---GKIISIDTSSLRAAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDGTMLSA 82 (109)
T ss_dssp EEECTT---CCEEEEECHHHHTTCCSCHHHHHHHHHHHHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEEECTTSCEEEE
T ss_pred EEECCC---ceEEEECHHHhhHhhcCCHHHHcCCcHHHeECcccchHHHhhHHHHHHHhhcccchhhhhhhhccCcEEEE
Confidence 345777 999999999999999985 8999999999999988542 3333456667777788889999999999999
Q ss_pred EEEEEEeecCCCCcEEEEEEE
Q 022983 109 LFKMSLVFGKEDGRATHFVAV 129 (289)
Q Consensus 109 ~~~~~~~~~~~~g~~~~~~~~ 129 (289)
..+..++.++..+.+..++++
T Consensus 83 ~t~~~~~~~~~~~~~~~Ii~~ 103 (109)
T d1oj5a_ 83 HTRCKLCYPQSPDMQPFIMGI 103 (109)
T ss_dssp EEEEEEECC----CCCEEEEE
T ss_pred EEEEEEEECCCCCcccEEEEE
Confidence 999999987223444444443
No 13
>d1jnua_ d.110.3.6 (A:) Photoreceptor phy3 flavin-binding domain, lov2 {Maidenhair fern (Adiantum capillus-veneris) [TaxId: 13818]}
Probab=99.13 E-value=1.9e-11 Score=82.18 Aligned_cols=37 Identities=43% Similarity=0.695 Sum_probs=34.4
Q ss_pred ccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhcc
Q 022983 252 QSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITRI 288 (289)
Q Consensus 252 ~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~~ 288 (289)
++++|||+..||++|+|+|++|+++|||+.+|++|+.
T Consensus 1 ~~fvi~d~~~pd~~I~y~N~a~~~~~G~s~~e~~G~~ 37 (104)
T d1jnua_ 1 KSFVITDPRLPDNPIIFASDRFLELTEYTREEVLGNN 37 (104)
T ss_dssp CEEEEECTTSTTCCEEEECHHHHHHHTCCHHHHTTSC
T ss_pred CeEEEEcCCCCCCEEEEEcHHHHHHHCcCHHHHCCcc
Confidence 4689999988899999999999999999999999984
No 14
>d1v9ya_ d.110.3.2 (A:) Direct oxygen sensor protein, DOS {Escherichia coli [TaxId: 562]}
Probab=98.97 E-value=2.6e-10 Score=77.46 Aligned_cols=43 Identities=21% Similarity=0.160 Sum_probs=40.4
Q ss_pred HHHHhhcccccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhcc
Q 022983 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITRI 288 (289)
Q Consensus 243 ~~~~~e~~~~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~~ 288 (289)
+..++++++++|+++|. +|+|+++|++|++++||+.+|++|+.
T Consensus 3 ~~~~~e~~~d~i~~~d~---~g~i~~~N~~~~~l~Gy~~~e~~g~~ 45 (113)
T d1v9ya_ 3 FFPALEQNMMGAVLINE---NDEVMFFNPAAEKLWGYKREEVIGNN 45 (113)
T ss_dssp HHHHHHTCSSEEEEECT---TSBEEEECHHHHHHHSCCGGGTTTSB
T ss_pred HHHHHHcCcCcEEEEeC---CCCEEEEchhHhhhhccchhhhcCcc
Confidence 56789999999999999 99999999999999999999999973
No 15
>d1mzua_ d.110.3.1 (A:) PYP domain of sensor histidine kinase Ppr {Rhodospirillum centenum [TaxId: 34018]}
Probab=98.94 E-value=3.1e-10 Score=76.89 Aligned_cols=42 Identities=12% Similarity=0.011 Sum_probs=39.4
Q ss_pred HHHhhcccccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhcc
Q 022983 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITRI 288 (289)
Q Consensus 244 ~~~~e~~~~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~~ 288 (289)
..+++.+++||+++|. +|+|+++|+++++|+||+++|++||.
T Consensus 6 ~A~ld~~p~gvi~~D~---~G~I~~~N~aa~~~~G~~~eellG~~ 47 (110)
T d1mzua_ 6 TAEFDALPVGAIQVDG---SGVIHRYNRTESRLSGRIPERVIGRN 47 (110)
T ss_dssp CTTGGGCSSEEEEEET---TCBEEEECHHHHHHHCCCHHHHTTSB
T ss_pred HHHHhCCCcEEEEEcC---CCCEEEeHHHHHHHHcCCHHHHcCCC
Confidence 4578999999999999 99999999999999999999999984
No 16
>d1bywa_ d.110.3.6 (A:) Erg potassium channel, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.81 E-value=1.4e-09 Score=73.55 Aligned_cols=37 Identities=19% Similarity=0.467 Sum_probs=33.7
Q ss_pred ccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhcc
Q 022983 252 QSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITRI 288 (289)
Q Consensus 252 ~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~~ 288 (289)
..++|+|+..+|.+|+|+|++|++||||+.+|++||.
T Consensus 2 ~~f~i~~~~~~d~~I~~~N~a~~~l~G~~~~eiiG~~ 38 (110)
T d1bywa_ 2 RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRP 38 (110)
T ss_dssp CEEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSB
T ss_pred ceEEEEcCCCCCCEEEEEcHHHHHHhCCCHHHhcccC
Confidence 3578999877899999999999999999999999984
No 17
>d1ew0a_ d.110.3.2 (A:) Histidine kinase FixL heme domain {Rhizobium meliloti [TaxId: 382]}
Probab=98.80 E-value=2.2e-09 Score=74.84 Aligned_cols=43 Identities=19% Similarity=0.078 Sum_probs=40.8
Q ss_pred HHHHhhcccccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhcc
Q 022983 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITRI 288 (289)
Q Consensus 243 ~~~~~e~~~~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~~ 288 (289)
+..++++++++|+++|. +|+|+++|++|++++||+.+|++|+-
T Consensus 18 ~~~i~~~~~~~i~~~d~---~g~i~~~N~~~~~l~Gy~~~el~g~~ 60 (130)
T d1ew0a_ 18 LRSILDTVPDATVVSAT---DGTIVSFNAAAVRQFGYAEEEVIGQN 60 (130)
T ss_dssp HHHHHTTCSSEEEEEET---TSBEEEECHHHHHHHCCCHHHHTTSB
T ss_pred HHHHHHcCCCeEEEEeC---CccEEEEHHHHHHhhcCCHHHhcCCc
Confidence 67889999999999999 99999999999999999999999973
No 18
>d1nwza_ d.110.3.1 (A:) Photoactive yellow protein, PYP {Ectothiorhodospira halophila [TaxId: 1053]}
Probab=98.74 E-value=3.9e-09 Score=73.07 Aligned_cols=43 Identities=16% Similarity=0.007 Sum_probs=40.0
Q ss_pred HHHHhhcccccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhcc
Q 022983 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITRI 288 (289)
Q Consensus 243 ~~~~~e~~~~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~~ 288 (289)
+...++..++||++.|. +|+|+++|++|++++||+++|++||.
T Consensus 19 ~d~~ld~~p~gi~~lD~---~G~i~~~N~a~~~l~G~~~~e~iG~~ 61 (125)
T d1nwza_ 19 DDGQLDGLAFGAIQLDG---DGNILQYNAAEGDITGRDPKQVIGKN 61 (125)
T ss_dssp CHHHHTTCSSEEEEEET---TCBEEEECHHHHHHHCCCHHHHTTSB
T ss_pred HHHHHhCCCccEEEEeC---CCCEEEEcHHHHHhhccchHhhcCCC
Confidence 35678999999999999 99999999999999999999999984
No 19
>d1ll8a_ d.110.3.5 (A:) N-terminal PAS domain of Pas kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.44 E-value=4.3e-08 Score=66.43 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=33.3
Q ss_pred cccccEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhcc
Q 022983 249 RIKQSFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITRI 288 (289)
Q Consensus 249 ~~~~~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~~ 288 (289)
...++|+++|+ .+|+|+++|+++++++||+++|++|+.
T Consensus 6 ~~n~AI~~id~--~~G~I~~~N~a~~~l~Gy~~~el~g~~ 43 (114)
T d1ll8a_ 6 EFNKAIFTVDA--KTTEILVANDKACGLLGYSSQDLIGQK 43 (114)
T ss_dssp TTTCEEEEEET--TTCBEEEECTTHHHHHTCCTTTTTTSB
T ss_pred hcCcEEEEEEC--CCCEEEEECHHHHHhhcCCHHHHcCCC
Confidence 45688999995 169999999999999999999999984
No 20
>d1p97a_ d.110.3.7 (A:) Hypoxia-inducible factor Hif2a, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.02 E-value=1e-06 Score=59.20 Aligned_cols=33 Identities=21% Similarity=0.210 Sum_probs=28.8
Q ss_pred cEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhcc
Q 022983 253 SFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITRI 288 (289)
Q Consensus 253 ~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~~ 288 (289)
.|+..|. +|+|+|+|+++++++||+.+|++|+.
T Consensus 8 fi~r~~~---dG~i~~~N~~~~~~~G~~~~el~g~~ 40 (114)
T d1p97a_ 8 FLSRHSM---DMKFTYCDDRITELIGYHPEELLGRS 40 (114)
T ss_dssp EEEEECT---TTSCSEECTTHHHHTSSCHHHHTTSC
T ss_pred EEEEECC---CCcEEEECHHHHHHcCCCcccccccc
Confidence 3444577 99999999999999999999999973
No 21
>d2oola2 d.110.3.9 (A:26-139) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=97.27 E-value=0.00019 Score=47.78 Aligned_cols=42 Identities=7% Similarity=-0.002 Sum_probs=35.6
Q ss_pred EEEEEeC-CCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCC
Q 022983 30 SFTITDP-SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74 (289)
Q Consensus 30 ~i~~~d~-~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~ 74 (289)
.++++|. + ++|+++++....++|+++++++|+++..++++.+
T Consensus 19 ~Llvld~~d---~~I~~vS~N~~~lLG~~~~~llG~~l~dll~~~~ 61 (114)
T d2oola2 19 YLFVVSETD---LRIASVSANVEDLLRQPPASLLNVPIAHYLTAAS 61 (114)
T ss_dssp EEEEECTTT---CBEEEEETTHHHHHSSCGGGGTTCBGGGGBCHHH
T ss_pred EEEEEECCC---CEEEEEcCCHHHHhCCChHHHcCCCHHHhCCHHH
Confidence 3455664 5 9999999999999999999999999988887644
No 22
>d1oj5a_ d.110.3.8 (A:) PAS domain of steroid receptor coactivator 1A, NCo-A1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.14 E-value=0.00017 Score=47.50 Aligned_cols=32 Identities=9% Similarity=0.094 Sum_probs=27.6
Q ss_pred EEEeCCCCCCCCEEEecHHHHHhhCCC-hHhHhhcc
Q 022983 254 FVLIDPHLPDMPMVYASDAFLKLTGAQ-IFTKITRI 288 (289)
Q Consensus 254 i~i~d~~~~~~~i~~vN~~f~~~tGys-~~E~~G~~ 288 (289)
+.-.|. +|+|+++|++..+++||. .+|++|+.
T Consensus 5 ~trh~~---~g~~~~vd~~~~~~~gy~~~eelig~s 37 (109)
T d1oj5a_ 5 MTKQDT---TGKIISIDTSSLRAAGRTGWEDLVRKC 37 (109)
T ss_dssp EEEECT---TCCEEEEECHHHHTTCCSCHHHHHHHH
T ss_pred EEEECC---CceEEEECHHHhhHhhcCCHHHHcCCc
Confidence 344567 999999999999999999 49999984
No 23
>d2oola2 d.110.3.9 (A:26-139) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=95.32 E-value=0.0061 Score=40.00 Aligned_cols=26 Identities=12% Similarity=0.019 Sum_probs=24.7
Q ss_pred CCCEEEecHHHHHhhCCChHhHhhcc
Q 022983 263 DMPMVYASDAFLKLTGAQIFTKITRI 288 (289)
Q Consensus 263 ~~~i~~vN~~f~~~tGys~~E~~G~~ 288 (289)
+++|+|+.+...+++||+.++++|+-
T Consensus 27 d~~I~~vS~N~~~lLG~~~~~llG~~ 52 (114)
T d2oola2 27 DLRIASVSANVEDLLRQPPASLLNVP 52 (114)
T ss_dssp TCBEEEEETTHHHHHSSCGGGGTTCB
T ss_pred CCEEEEEcCCHHHHhCCChHHHcCCC
Confidence 79999999999999999999999973
No 24
>d2veaa3 d.110.3.9 (A:4-130) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=94.85 E-value=0.019 Score=38.33 Aligned_cols=43 Identities=14% Similarity=0.057 Sum_probs=34.9
Q ss_pred EEEEEeC-CCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCC
Q 022983 30 SFTITDP-SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTN 75 (289)
Q Consensus 30 ~i~~~d~-~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~ 75 (289)
.++++|. + ++|..++.....++|+++++++|+++..++.+...
T Consensus 28 ~LLald~~~---~~I~~aS~N~~~~lG~~~~~lLG~~l~~ll~~~~~ 71 (127)
T d2veaa3 28 LVVVLQEPD---LTISQISANCTGILGRSPEDLLGRTLGEVFDSFQI 71 (127)
T ss_dssp EEEEEETTT---TEEEEEETTHHHHTSCCTTTSSTTTTTTTSBCC--
T ss_pred EEEEEECCC---CEEEEEcCCHHHHhCcChHHHcCCCHHHHCCHHHH
Confidence 3455664 5 89999999999999999999999999888865543
No 25
>d2o9ca2 d.110.3.9 (A:4-130) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]}
Probab=92.14 E-value=0.085 Score=34.99 Aligned_cols=39 Identities=13% Similarity=0.066 Sum_probs=33.4
Q ss_pred EEEEEeC-CCCCccEEEccHHHHHHhCCCccccCCCCCCCccC
Q 022983 30 SFTITDP-SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQG 71 (289)
Q Consensus 30 ~i~~~d~-~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~ 71 (289)
.++++|. + +.|+.++.....++|+++++++|++...+++
T Consensus 37 ~LLald~~~---~~I~~~S~N~~~~lG~~~~~llG~~l~~ll~ 76 (127)
T d2o9ca2 37 ALLTADGHS---GEVLQMSLNAATFLGQEPTVLRGQTLAALLP 76 (127)
T ss_dssp EEEEEETTT---CBEEEEETTHHHHHSSCHHHHTTCBHHHHCT
T ss_pred EEEEEECCC---CEEEEECCCHHHHhCCChHHHcCCCHHHHCC
Confidence 3455564 5 9999999999999999999999999888874
No 26
>d2o9ca2 d.110.3.9 (A:4-130) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]}
Probab=85.56 E-value=0.39 Score=31.57 Aligned_cols=26 Identities=8% Similarity=-0.109 Sum_probs=24.5
Q ss_pred CCCEEEecHHHHHhhCCChHhHhhcc
Q 022983 263 DMPMVYASDAFLKLTGAQIFTKITRI 288 (289)
Q Consensus 263 ~~~i~~vN~~f~~~tGys~~E~~G~~ 288 (289)
+++|++++....+++|++.++++|+-
T Consensus 45 ~~~I~~~S~N~~~~lG~~~~~llG~~ 70 (127)
T d2o9ca2 45 SGEVLQMSLNAATFLGQEPTVLRGQT 70 (127)
T ss_dssp TCBEEEEETTHHHHHSSCHHHHTTCB
T ss_pred CCEEEEECCCHHHHhCCChHHHcCCC
Confidence 79999999999999999999999973
No 27
>d3c2wa3 d.110.3.9 (A:5-117) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]}
Probab=82.35 E-value=1.9 Score=27.42 Aligned_cols=70 Identities=11% Similarity=0.108 Sum_probs=41.1
Q ss_pred EEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEE
Q 022983 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWML 109 (289)
Q Consensus 31 i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~ 109 (289)
++++|.+ +.|+.++.....++|++++ .+|+....++. ......+...+.....+...... ..+|..+++.
T Consensus 25 LLald~~---~~I~~~S~N~~~~lg~~~~-~L~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~d~~ 94 (113)
T d3c2wa3 25 LVTLRAD---GMVLAASENIQALLGFVAS-PGSYLTQEQVG----PEVLRMLEEGLTGNGPWSNSVET-RIGEHLFDVI 94 (113)
T ss_dssp EEEECTT---SBEEEEETTHHHHTSSCCC-TTCBCCHHHHH----HHHHHHHHHHHSCSSCCCCEEEE-CCSSSCEEEE
T ss_pred EEEEcCC---CeEEEEcCCHHHHhCCChh-HhcccHHHHhC----HHHHHHHHhhhhcCCCceeEEEe-ccCCeEEEEE
Confidence 4556777 9999999999999999865 45665444332 22333444444444433333322 3456655543
No 28
>d2veaa3 d.110.3.9 (A:4-130) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=75.08 E-value=0.86 Score=29.83 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=24.0
Q ss_pred CCCEEEecHHHHHhhCCChHhHhhc
Q 022983 263 DMPMVYASDAFLKLTGAQIFTKITR 287 (289)
Q Consensus 263 ~~~i~~vN~~f~~~tGys~~E~~G~ 287 (289)
+++|+++......++|++.++++|+
T Consensus 36 ~~~I~~aS~N~~~~lG~~~~~lLG~ 60 (127)
T d2veaa3 36 DLTISQISANCTGILGRSPEDLLGR 60 (127)
T ss_dssp TTEEEEEETTHHHHTSCCTTTSSTT
T ss_pred CCEEEEEcCCHHHHhCcChHHHcCC
Confidence 7899999999999999999999997
No 29
>d3c2wa3 d.110.3.9 (A:5-117) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]}
Probab=44.40 E-value=8.2 Score=24.17 Aligned_cols=31 Identities=19% Similarity=0.115 Sum_probs=24.8
Q ss_pred cEEEeCCCCCCCCEEEecHHHHHhhCCChHhHhhc
Q 022983 253 SFVLIDPHLPDMPMVYASDAFLKLTGAQIFTKITR 287 (289)
Q Consensus 253 ~i~i~d~~~~~~~i~~vN~~f~~~tGys~~E~~G~ 287 (289)
.++..|+ ++.|+++......++|++.+ .+|+
T Consensus 24 ~LLald~---~~~I~~~S~N~~~~lg~~~~-~L~~ 54 (113)
T d3c2wa3 24 ALVTLRA---DGMVLAASENIQALLGFVAS-PGSY 54 (113)
T ss_dssp EEEEECT---TSBEEEEETTHHHHTSSCCC-TTCB
T ss_pred EEEEEcC---CCeEEEEcCCHHHHhCCChh-Hhcc
Confidence 3456677 89999999999999999865 4554
No 30
>d1smpi_ b.61.2.1 (I:) Metalloprotease inhibitor {Erwinia chrysanthemi [TaxId: 556]}
Probab=36.81 E-value=10 Score=23.04 Aligned_cols=24 Identities=13% Similarity=0.076 Sum_probs=19.3
Q ss_pred hcccccEEEeCCCCCCCC-EEEecHHHH
Q 022983 248 GRIKQSFVLIDPHLPDMP-MVYASDAFL 274 (289)
Q Consensus 248 e~~~~~i~i~d~~~~~~~-i~~vN~~f~ 274 (289)
.-.+|||.+|+. +|. |.+.|+.-.
T Consensus 59 ~PtPDGiaLt~~---~Gs~i~ffsR~~e 83 (100)
T d1smpi_ 59 RPTPDGLTLTQA---DGSAVAFFSRNRD 83 (100)
T ss_dssp EECSSEEEEECT---TSCEEEEEEEETT
T ss_pred ccCCCeEEEecC---CCCeEEeeeecCc
Confidence 446899999999 886 888887654
No 31
>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}
Probab=34.11 E-value=16 Score=23.80 Aligned_cols=45 Identities=20% Similarity=0.301 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCC
Q 022983 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGR 64 (289)
Q Consensus 16 ~~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~ 64 (289)
..+....+.+..|+++++.-.+ .+-.....+.+..||++..++|+
T Consensus 98 ~~~i~~~i~k~~p~aivivvtN----PvDv~t~~~~~~sglp~~rViG~ 142 (142)
T d1uxja1 98 TRACISQAAPLSPNAVIIMVNN----PLDAMTYLAAEVSGFPKERVIGQ 142 (142)
T ss_dssp HHHHHHHHGGGCTTCEEEECSS----SHHHHHHHHHHHHCCCGGGEEEC
T ss_pred HHHHHHHHhccCCCceEEEeCC----chHHHHHHHHHHHCcCcccccCc
Confidence 3456677889999999877554 22334556788899999988874
No 32
>d2hjea1 d.110.6.3 (A:52-270) Autoinducer 2 sensor kinase/phosphatase LuxQ {Vibrio harveyi [TaxId: 669]}
Probab=30.02 E-value=84 Score=21.97 Aligned_cols=91 Identities=12% Similarity=0.038 Sum_probs=52.7
Q ss_pred HhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHhCCCeEEEEEEEecCC
Q 022983 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDG 103 (289)
Q Consensus 24 ~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g 103 (289)
-.++|+..++.+.+ |.+ |+++-..++|.... ....+.........|..- ... ...
T Consensus 57 p~~~pD~rFi~~~~---g~~--W~Dgna~F~Gi~~~------------------~L~~l~~~v~~~~~W~~i-~~~-~~~ 111 (219)
T d2hjea1 57 PSHTPEFRFLTDHK---GII--WDDGNAHFYGVNDL------------------ILDSLANRVSFSNNWYYI-NVM-TSI 111 (219)
T ss_dssp GGGCCSEEEEECSS---SEE--EECSGGGGGTCCHH------------------HHHHHHHHCCSSSSCEEE-EEE-ETT
T ss_pred ccCCCceEEEecCC---CCE--EECCCcceeccchH------------------HHhhhcccCCCCCceEEE-Ecc-Ccc
Confidence 34678888888877 633 34434444554321 122233332333445422 222 334
Q ss_pred CEEEEEEEEEEeecCCCCcEEEEEEEEecccccHHH
Q 022983 104 TPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (289)
Q Consensus 104 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~~ 139 (289)
....+.++-.|+.++..|++.|++-.+..+...-..
T Consensus 112 ~~~~lL~rr~pIi~~~TGeVlG~ly~gvVLnnNfsl 147 (219)
T d2hjea1 112 GSRHMLVRRVPILDPSTGEVLGFSFNAVVLDNNFAL 147 (219)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEEEEEEEECTTCHHH
T ss_pred cceeEEEEeeeeecCCCCcEEEEEEEEEEecCcHHH
Confidence 455667888898876799999998877777765444
No 33
>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}
Probab=26.99 E-value=31 Score=22.93 Aligned_cols=44 Identities=20% Similarity=0.420 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCC
Q 022983 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIG 63 (289)
Q Consensus 16 ~~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g 63 (289)
.......+.+..|++++++-.+ .+-.+...+.+..|+++..++|
T Consensus 117 ~~~i~~~i~~~~p~aiiivvtN----PvDv~t~~~~k~sglp~~rViG 160 (160)
T d1i0za1 117 FKFIIPQIVKYSPDCIIIVVSN----PVDILTYVTWKLSGLPKHRVIG 160 (160)
T ss_dssp HHHHHHHHHHHCTTCEEEECSS----SHHHHHHHHHHHHCCCGGGEEE
T ss_pred HHHHHHHHHhcCCCcEEEEeCC----chHHHHHHHHHHHCcCcccccC
Confidence 4456677888999998877654 2223445578888999888775
No 34
>d1kcfa1 a.140.2.1 (A:3-38) Mitochondrial resolvase ydc2 N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=25.42 E-value=10 Score=17.19 Aligned_cols=17 Identities=35% Similarity=0.319 Sum_probs=11.2
Q ss_pred HHHHhhCCCh----HhHhhcc
Q 022983 272 AFLKLTGAQI----FTKITRI 288 (289)
Q Consensus 272 ~f~~~tGys~----~E~~G~~ 288 (289)
-.|++||.++ +|++-++
T Consensus 9 hickltglsrsgrkdellrri 29 (36)
T d1kcfa1 9 HICKLTGLSRSGRKDELLRRI 29 (36)
T ss_dssp HHHHHTTCCCCSCTTHHHHHH
T ss_pred HHHHhhcccccccHHHHHHHH
Confidence 3578888886 5665543
No 35
>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}
Probab=23.39 E-value=13 Score=24.40 Aligned_cols=49 Identities=14% Similarity=0.164 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCC
Q 022983 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIG 63 (289)
Q Consensus 15 ~~~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g 63 (289)
-..+....+.++.|++++++-.++.|-....+...+.+..||++..++|
T Consensus 96 i~~~i~~~i~~~~p~~iiivvtNPvD~~t~~~~~~~kk~~~~p~~rViG 144 (144)
T d1mlda1 96 IVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFG 144 (144)
T ss_dssp HHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEE
T ss_pred HHHHHHHHHHhcCCCeEEEEecCchhhhHHHHHHHHHHhcCCCcccccC
Confidence 3556777888999999888765411111112223344556788877665
No 36
>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=23.16 E-value=39 Score=21.93 Aligned_cols=45 Identities=16% Similarity=0.295 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCC
Q 022983 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGR 64 (289)
Q Consensus 16 ~~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~ 64 (289)
.......+..+.|+++++.-.+ .+--+...+.+..|++++.++|.
T Consensus 103 ~~~i~~~i~~~~p~a~~ivvtN----Pvd~~t~~~~k~sg~p~~rViG~ 147 (148)
T d1ldna1 103 FRSIVESVMASGFQGLFLVATN----PVDILTYATWKFSGLPHERVIGS 147 (148)
T ss_dssp HHHHHHHHHHHTCCSEEEECSS----SHHHHHHHHHHHHTCCGGGEEEC
T ss_pred HHHHHHHHHhhCCCceEEEecC----ccHHHHHHHHHHHCcChhheecC
Confidence 4456677888999998776543 22234455778889999888774
No 37
>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}
Probab=22.97 E-value=43 Score=21.90 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCC
Q 022983 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGR 64 (289)
Q Consensus 16 ~~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~ 64 (289)
..+....+.+..|+++++.-.+ .+-.....+.+.+||++..++|.
T Consensus 110 v~~i~~~i~~~~p~aiviivsN----Pvd~lt~~~~~~sg~p~~rViG~ 154 (154)
T d1pzga1 110 IREIGQNIKKYCPKTFIIVVTN----PLDCMVKVMCEASGVPTNMICGM 154 (154)
T ss_dssp HHHHHHHHHHHCTTCEEEECCS----SHHHHHHHHHHHHCCCGGGEEEC
T ss_pred HHHHHHHHHhcCCCcEEEEeCC----cHHHHHHHHHHHhCcChhcEecC
Confidence 4556677888899998876543 33334556788889999888773
No 38
>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=22.14 E-value=27 Score=22.68 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCC
Q 022983 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIG 63 (289)
Q Consensus 16 ~~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g 63 (289)
..+....+.+..|++++++-.+ .+-.+...+.+..|+++..++|
T Consensus 99 ~~~i~~~i~~~~p~~i~ivvtN----PvDvmt~~~~k~sg~~~~rViG 142 (142)
T d1o6za1 99 MEDIQSSLDEHNDDYISLTTSN----PVDLLNRHLYEAGDRSREQVIG 142 (142)
T ss_dssp HHHHHHHHHTTCSCCEEEECCS----SHHHHHHHHHHHSSSCGGGEEE
T ss_pred HHHHHHHHHhcCCCceEEEecC----hHHHHHHHHHHHHCcCcccccC
Confidence 4456677888899998876544 1122345567778998887765
No 39
>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}
Probab=20.78 E-value=34 Score=22.07 Aligned_cols=44 Identities=14% Similarity=0.209 Sum_probs=29.7
Q ss_pred HHHHHHHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCCC
Q 022983 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGR 64 (289)
Q Consensus 17 ~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~ 64 (289)
......+.+..|+++++.-.+ .+-.....+.+..|+++..++|.
T Consensus 98 ~~i~~~i~~~~p~ai~ivvtN----Pvdv~t~~~~k~sg~p~~rViG~ 141 (142)
T d1y6ja1 98 KEVTQNIMKYYNHGVILVVSN----PVDIITYMIQKWSGLPVGKVIGS 141 (142)
T ss_dssp HHHHHHHHHHCCSCEEEECSS----SHHHHHHHHHHHHTCCTTTEEEC
T ss_pred HHHHHHhhccCCCceEEEecC----hHHHHHHHHHHHHCCCccceecC
Confidence 345567888999998776543 11123345778889998888774
No 40
>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=20.55 E-value=30 Score=22.40 Aligned_cols=44 Identities=20% Similarity=0.281 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhCCCEEEEEeCCCCCccEEEccHHHHHHhCCCccccCC
Q 022983 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIG 63 (289)
Q Consensus 16 ~~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g 63 (289)
..+....+.+..|+++++.-.+ .+--....+.+..||++..++|
T Consensus 98 ~~~i~~~i~~~~p~aivivvtN----PvD~~t~~~~k~sg~p~~rViG 141 (142)
T d1ojua1 98 IKDIAKKIVENAPESKILVVTN----PMDVMTYIMWKESGKPRNEVFG 141 (142)
T ss_dssp HHHHHHHHHTTSTTCEEEECSS----SHHHHHHHHHHHSCCCTTSEEE
T ss_pred HHHHHHHHHhhCCCcEEEEecC----ChHHHHHHHHHHHCCChhcEec
Confidence 3455667888899998776554 1222334577888998888776
Done!