BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022985
         (289 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1P9O|A Chain A, Crystal Structure Of Phosphopantothenoylcysteine
           Synthetase
 pdb|1P9O|B Chain B, Crystal Structure Of Phosphopantothenoylcysteine
           Synthetase
          Length = 313

 Score =  226 bits (576), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 121/277 (43%), Positives = 162/277 (58%), Gaps = 7/277 (2%)

Query: 19  RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCS 78
           RRV  VTSGGT VPLE R VR++DNFSSG RGA S E  +  GY V+FLYR  +  PY  
Sbjct: 37  RRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARSAFPYAH 96

Query: 79  SLPDDAFLECFEVTEESAVQVCQPYSE-----AVKRAIRDHHAAVAGGLLLKLPFTTIFE 133
             P   +L     +  +   +    +E         A+R +  A A G  L + FTT+ +
Sbjct: 97  RFPPQTWLSALRPSGPALSGLLSLEAEENALPGFAEALRSYQEAAAAGTFLVVEFTTLAD 156

Query: 134 YLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKML 193
           YL +LQ  A +   LGP +MFYLAAAVSDFYVP   M EHKI+S  GPL + +  VPK+L
Sbjct: 157 YLHLLQAAAQALNPLGPSAMFYLAAAVSDFYVPVSEMPEHKIESSGGPLQITMKMVPKLL 216

Query: 194 SVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNG 253
           S L K+WAP AF ISFKLETD  I++ +A  A + Y    VVAN L SR+  V++VT + 
Sbjct: 217 SPLVKDWAPKAFIISFKLETDPAIVINRARKALEIYQHQVVVANILESRQSFVLIVTKDS 276

Query: 254 --KIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKDSN 288
             K+ +  ++     ++E+ +   L  RH+ +I D N
Sbjct: 277 ETKLLLSEEEIEKGVEIEEKIVDNLQSRHTAFIGDRN 313


>pdb|2GK4|A Chain A, The Crystal Structure Of The Dna/pantothenate Metabolism
           Flavoprotein From Streptococcus Pneumoniae
 pdb|2GK4|B Chain B, The Crystal Structure Of The Dna/pantothenate Metabolism
           Flavoprotein From Streptococcus Pneumoniae
          Length = 232

 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 92/226 (40%), Gaps = 49/226 (21%)

Query: 23  CVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPD 82
            VTSGGT+  ++   VR I N S+GH G   TE L+  GY V  +  +   +P     P+
Sbjct: 7   LVTSGGTSEAID--SVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALKPEPH--PN 62

Query: 83  DAFLECFEVTEESAVQV-----CQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQM 137
              L   E+T    + +      Q Y   +      H  AV+        +T +  Y   
Sbjct: 63  ---LSIREITNTKDLLIEXQERVQDYQVLI------HSXAVSD-------YTPV--YXTG 104

Query: 138 LQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLR 197
           L+ +  SS              + +F       A  KI S      + L + PK++S L 
Sbjct: 105 LEEVQASSN-------------LKEFLSKQNHQA--KISSTDEVQVLFLKKTPKIIS-LV 148

Query: 198 KEWAPMAFCISFKLETD-AEILLEKADMARK---KYGMHAVVANEL 239
           KEW P    I FKL  D  E  L   D+ARK   K     ++AN+L
Sbjct: 149 KEWNPTIHLIGFKLLVDVTEDHL--VDIARKSLIKNQADLIIANDL 192


>pdb|2GB3|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
           From Thermotoga Maritima At 2.50 A Resolution
 pdb|2GB3|B Chain B, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
           From Thermotoga Maritima At 2.50 A Resolution
 pdb|2GB3|C Chain C, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
           From Thermotoga Maritima At 2.50 A Resolution
 pdb|2GB3|D Chain D, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
           From Thermotoga Maritima At 2.50 A Resolution
 pdb|2GB3|E Chain E, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
           From Thermotoga Maritima At 2.50 A Resolution
 pdb|2GB3|F Chain F, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
           From Thermotoga Maritima At 2.50 A Resolution
          Length = 409

 Score = 29.3 bits (64), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 5/55 (9%)

Query: 83  DAFLECFEVTEESAVQVCQPYSE-AVKRAIRDHHAAVAGGLLLKLP---FTTIFE 133
           D F +   +TEES ++   P++E A KR +R HH  + G   LK P   F  I+E
Sbjct: 14  DVFSDRVLLTEESPIRKLVPFAEXAKKRGVRIHHLNI-GQPDLKTPEVFFERIYE 67


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.134    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,003,416
Number of Sequences: 62578
Number of extensions: 294056
Number of successful extensions: 702
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 694
Number of HSP's gapped (non-prelim): 7
length of query: 289
length of database: 14,973,337
effective HSP length: 98
effective length of query: 191
effective length of database: 8,840,693
effective search space: 1688572363
effective search space used: 1688572363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)