BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022985
(289 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GXR5|PPCS1_ARATH Phosphopantothenate--cysteine ligase 1 OS=Arabidopsis thaliana
GN=PPCS1 PE=2 SV=1
Length = 317
Score = 387 bits (993), Expect = e-107, Method: Compositional matrix adjust.
Identities = 192/273 (70%), Positives = 224/273 (82%)
Query: 17 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPY 76
G RR+ CVTSGGTTVPLEQRCVRYIDNFSSG+RGAASTE+ +K GYAVIFLYRRGTC+PY
Sbjct: 45 GMRRIVCVTSGGTTVPLEQRCVRYIDNFSSGNRGAASTENFVKAGYAVIFLYRRGTCQPY 104
Query: 77 CSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQ 136
C LPDD FLECFE + +QV +S AVK A+ D AAVA G LLKLPF+TI+EYLQ
Sbjct: 105 CRYLPDDPFLECFEFPDAKNIQVHGSHSGAVKMAVMDQQAAVAEGRLLKLPFSTIYEYLQ 164
Query: 137 MLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVL 196
ML++IA + +GPCSMFYLAAAVSDFYVPW SM EHKI+SGSGPLD++L QVPKMLS+L
Sbjct: 165 MLRLIATILKDVGPCSMFYLAAAVSDFYVPWLSMTEHKIESGSGPLDIRLAQVPKMLSIL 224
Query: 197 RKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNGKIP 256
R WAP AFCISFKLETD++ILLEKA A +KY +HAVVANELL+RKE+VVVV+++G +
Sbjct: 225 RSNWAPKAFCISFKLETDSKILLEKATKALQKYKVHAVVANELLTRKEEVVVVSSSGNVV 284
Query: 257 VYRDKTSSDSDVEKPLTKLLVDRHSVYIKDSNT 289
V RD +S VE L +LLVDRHS YIK+S T
Sbjct: 285 VRRDSNKPESIVEDNLIRLLVDRHSTYIKESLT 317
>sp|Q9LZM3|PPCS2_ARATH Phosphopantothenate--cysteine ligase 2 OS=Arabidopsis thaliana
GN=PPCS2 PE=2 SV=2
Length = 309
Score = 387 bits (993), Expect = e-107, Method: Compositional matrix adjust.
Identities = 192/289 (66%), Positives = 234/289 (80%), Gaps = 2/289 (0%)
Query: 3 LFANCVAFFKCDY--EGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKM 60
+ N F K + +G RR+ CVTSGGTTVPLEQRCVRYIDNFSSG+RGAASTE+ +K
Sbjct: 21 ILENLNEFIKLNSSSQGGRRIVCVTSGGTTVPLEQRCVRYIDNFSSGNRGAASTENFVKA 80
Query: 61 GYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAG 120
GYAVIFLYRRGTC+PYC SLPDD FLECFE ++++ +QV + EAVK A+ D AVA
Sbjct: 81 GYAVIFLYRRGTCQPYCRSLPDDPFLECFEFSDKTNIQVHTSHLEAVKMAVMDQQTAVAE 140
Query: 121 GLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSG 180
G LLKLPF+TI+EYLQML++IA + + +GPCSMFYLAAAVSDFYVPWKSM EHKI+SGSG
Sbjct: 141 GSLLKLPFSTIYEYLQMLRLIAEALKDVGPCSMFYLAAAVSDFYVPWKSMTEHKIESGSG 200
Query: 181 PLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELL 240
PLD++L QVPKMLSVLR WAP AFCISFKLETD++IL+EKA A +KY +HAVVANEL
Sbjct: 201 PLDIRLAQVPKMLSVLRSNWAPKAFCISFKLETDSKILMEKATKALRKYKVHAVVANELS 260
Query: 241 SRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKDSNT 289
+RKE+VVVV+++G + V R+ +S VE L +L+VDRHS YIK+S+
Sbjct: 261 TRKEEVVVVSSSGNVVVRRECDKPESFVEDNLIRLIVDRHSTYIKESHN 309
>sp|Q9HAB8|PPCS_HUMAN Phosphopantothenate--cysteine ligase OS=Homo sapiens GN=PPCS PE=1
SV=2
Length = 311
Score = 227 bits (579), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 122/277 (44%), Positives = 161/277 (58%), Gaps = 7/277 (2%)
Query: 19 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCS 78
RRV VTSGGT VPLE R VR++DNFSSG RGA S E + GY V+FLYR + PY
Sbjct: 35 RRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARSAFPYAH 94
Query: 79 SLPDDAFLECFEVTEESAVQVCQPYSE-----AVKRAIRDHHAAVAGGLLLKLPFTTIFE 133
P +L + + + +E A+R + A A G L + FTT+ +
Sbjct: 95 RFPPQTWLSALRPSGPALSGLLSLEAEENALPGFAEALRSYQEAAAAGTFLAVEFTTLAD 154
Query: 134 YLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKML 193
YL +LQ A + LGP +MFYLAAAVSDFYVP M EHKIQS GPL + + VPK+L
Sbjct: 155 YLHLLQAAAQALNPLGPSAMFYLAAAVSDFYVPVSEMPEHKIQSSGGPLQITMKMVPKLL 214
Query: 194 SVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNG 253
S L K+WAP AF ISFKLETD I++ +A A + Y VVAN L SR+ V +VT +
Sbjct: 215 SPLVKDWAPKAFIISFKLETDPAIVINRARKALEIYQHQVVVANILESRQSFVFIVTKDS 274
Query: 254 --KIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKDSN 288
K+ + ++ ++E+ + L RH+ +I D N
Sbjct: 275 ETKLLLSEEEIEKGVEIEEKIVDNLQSRHTAFIGDRN 311
>sp|Q8VDG5|PPCS_MOUSE Phosphopantothenate--cysteine ligase OS=Mus musculus GN=Ppcs PE=2
SV=1
Length = 311
Score = 203 bits (517), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 118/280 (42%), Positives = 162/280 (57%), Gaps = 7/280 (2%)
Query: 16 EGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEP 75
E RRV +TSGGT VPLE R VR++DNFSSG RGAAS E + GY V+FLYR + P
Sbjct: 32 EQGRRVVLITSGGTKVPLEARAVRFLDNFSSGRRGAASAEVFLAAGYGVLFLYRARSAFP 91
Query: 76 YCSSLPDDAFLECFEVTEES-----AVQVCQPYSEAVKRAIRDHHAAVAGGLLLKLPFTT 130
Y P A+L + + +++ + A++ + A A G L + FTT
Sbjct: 92 YAHRFPPQAWLSALRPSGPAQSGKLSLEAEENALPGFAAALQSYQEAAAAGTFLAVEFTT 151
Query: 131 IFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVP 190
+ +YL +LQ A++ LG +MFYLAAAVSDFY+P M EHKI S GPL + + VP
Sbjct: 152 LADYLHLLQAAALALSPLGSSAMFYLAAAVSDFYIPVSEMPEHKIHSSGGPLQITMKMVP 211
Query: 191 KMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQVVVVT 250
KMLS L K+WAP AF +SFKLETD +I++ +A A + Y VVAN L S K V++VT
Sbjct: 212 KMLSPLVKDWAPKAFVVSFKLETDPDIIISRARNALEVYQHQVVVANILESIKSFVIIVT 271
Query: 251 NNGKIPVYRDKTSSDSD--VEKPLTKLLVDRHSVYIKDSN 288
+ + + + +E+ + L RH+ +I D N
Sbjct: 272 KDSETELLLSEEEVAKGLVIEEKIVDDLRSRHTAFICDKN 311
>sp|Q9USK7|YJ2I_SCHPO Uncharacterized protein C4B3.18 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC4B3.18 PE=3 SV=1
Length = 316
Score = 194 bits (494), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 107/239 (44%), Positives = 147/239 (61%), Gaps = 4/239 (1%)
Query: 17 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPY 76
++ +A VTSGGT VPLEQ VR+IDNFS+G+RGAAS E+ K GY+VIFLYR + P+
Sbjct: 36 NSQNIAFVTSGGTLVPLEQNTVRFIDNFSAGNRGAASAEYFCKSGYSVIFLYRNYSLMPF 95
Query: 77 CSSL--PDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEY 134
P E ++E V Q + V A+ + L+ +P+TT+ EY
Sbjct: 96 TRRYEGPWTNLFERSNGSQEKPWIVKQEFQSTVFNALNELDTYTKHHRLIMIPYTTLTEY 155
Query: 135 LQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGP--LDMQLLQVPKM 192
L L+ IA + + ++FYLAAAVSDF++P K ++EHKIQSGSG L++++ VPK
Sbjct: 156 LWYLKAIAERLQIIASRALFYLAAAVSDFHIPPKELSEHKIQSGSGSNKLEVKMHPVPKF 215
Query: 193 LSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQVVVVTN 251
L L WAP A ISFKLETD IL++KA +A ++Y V+AN L +RK V VT+
Sbjct: 216 LRFLVDTWAPEASIISFKLETDPSILIDKARVALQRYNHQLVIANLLSTRKRSVAFVTS 274
>sp|P40506|PPCS_YEAST Phosphopantothenate--cysteine ligase CAB2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=CAB2 PE=1
SV=2
Length = 365
Score = 168 bits (426), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 111/312 (35%), Positives = 160/312 (51%), Gaps = 32/312 (10%)
Query: 3 LFANCVAFFKCDYEGTR-RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMG 61
L + F Y R ++ +TSGGTTVPLE VR+IDNFS+G RGA+S E + G
Sbjct: 56 LIKDAKEFIDLQYSLKRNKIVLITSGGTTVPLENNTVRFIDNFSAGTRGASSAEQFLANG 115
Query: 62 YAVIFLYRRGTCEPYCSSLP---DDAFLECFEVTEESAVQVCQPYSEAV--KRAIRDHHA 116
Y+VIFL+R + PY S + FL+ +S ++ ++E V + + D +
Sbjct: 116 YSVIFLHREFSLTPYNRSFSHSINTLFLDYI----DSEGKIKPEFAENVLKNKKLYDKYM 171
Query: 117 AVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQ 176
LLL LPFTT+ +YL L+ IA + G C +FYLAAAVSDF+VP+ + +HKIQ
Sbjct: 172 EKEEKLLL-LPFTTVNQYLWSLKSIAKLLNNSG-C-LFYLAAAVSDFFVPYSRLPQHKIQ 228
Query: 177 SG-------------------SGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEI 217
SG G L + L VPK L L + WA A +SFKLETD +
Sbjct: 229 SGDNGKMGANNDTEGTTRTTPDGKLIVNLDPVPKFLRRLVESWATQAMIVSFKLETDESM 288
Query: 218 LLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLV 277
LL K A +Y V+ N L +R +QV+ V+ + + +E+ + ++
Sbjct: 289 LLYKCTQALDRYNHQLVIGNLLQTRNKQVIFVSPENRKGDWVRLDEKHHSIEEMIIPEVI 348
Query: 278 DRHSVYIKDSNT 289
RH ++ S T
Sbjct: 349 ARHDKWVAHSKT 360
>sp|Q58323|COABC_METJA Coenzyme A biosynthesis bifunctional protein CoaBC
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=coaBC
PE=3 SV=1
Length = 403
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 88/227 (38%), Gaps = 64/227 (28%)
Query: 16 EGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEP 75
EG R + +GGT +++ VR I N SSG G A E K G+ V + G P
Sbjct: 194 EGNR--VLILNGGTVEFIDK--VRVISNLSSGKMGVALAEAFCKEGFYVEVITAMGLEPP 249
Query: 76 YCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAGGLLLK-LPFTTIFEY 134
Y I++H A +L K + F+
Sbjct: 250 YY---------------------------------IKNHKVLTAKEMLNKAIELAKDFD- 275
Query: 135 LQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLS 194
I +SS AA+SDF V E K+ S L ++L + PK+L
Sbjct: 276 ------IIISS------------AAISDFTVES---FEGKLSSEE-ELILKLKRNPKVLE 313
Query: 195 VLRKEWAPMAFCISFKLE--TDAEILLEKADMARKKYGMHAVVANEL 239
LR+ + I FK E D + L+ +A KY ++ ++AN+L
Sbjct: 314 ELRRIYKD-KVIIGFKAEYNLDEKELINRAKERLNKYNLNMIIANDL 359
>sp|Q54LF0|SIR2B_DICDI NAD-dependent deacetylase sir2B OS=Dictyostelium discoideum
GN=sir2B PE=2 SV=1
Length = 778
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 22/143 (15%)
Query: 135 LQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQV----- 189
+ +L+ I S S FYL A+ + Y P K++ E + + P + L +
Sbjct: 2 INILKDILYKSYSYLAFPFFYLGWAIKNSYQPNKTIKEEESKPPKYPKEWSDLFIHSYNN 61
Query: 190 --PKMLSVLRKE-----------WAPMAFCISFKLETDAEILLEKA-DMARKKY-GMHAV 234
K+L +++KE W P+ +S K +LLE+ +++ K+Y H
Sbjct: 62 EHEKVLEIIQKEPNSINSVDSLNWTPLHVAVSNKSIEVVTLLLERNIEISIKRYTAFHIA 121
Query: 235 VANELLSRKEQVVVVTN--NGKI 255
N L+ E+++ + NG I
Sbjct: 122 ACNGDLNIIEKMITMNRVPNGNI 144
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,148,018
Number of Sequences: 539616
Number of extensions: 3757101
Number of successful extensions: 8425
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8410
Number of HSP's gapped (non-prelim): 9
length of query: 289
length of database: 191,569,459
effective HSP length: 116
effective length of query: 173
effective length of database: 128,974,003
effective search space: 22312502519
effective search space used: 22312502519
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)