Query 022987
Match_columns 289
No_of_seqs 201 out of 1550
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 14:27:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022987.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022987hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j21_g 50S ribosomal protein L 77.7 0.43 1.5E-05 30.2 -0.1 27 121-147 13-39 (51)
2 1z2q_A LM5-1; membrane protein 77.3 2 6.8E-05 30.0 3.3 26 121-146 20-47 (84)
3 1y02_A CARP2, FYVE-ring finger 77.1 1.2 4.2E-05 33.5 2.2 25 122-146 19-45 (120)
4 1x4u_A Zinc finger, FYVE domai 76.7 2 7E-05 29.9 3.2 25 122-146 14-40 (84)
5 2ayj_A 50S ribosomal protein L 76.2 1.2 4E-05 28.6 1.6 28 121-148 18-45 (56)
6 2yw8_A RUN and FYVE domain-con 72.4 2.6 8.8E-05 29.3 2.8 25 122-146 19-45 (82)
7 1wfk_A Zinc finger, FYVE domai 70.0 3.1 0.00011 29.3 2.8 25 122-146 9-35 (88)
8 3zyq_A Hepatocyte growth facto 70.0 2.6 9E-05 35.2 2.8 25 122-146 164-190 (226)
9 1vfy_A Phosphatidylinositol-3- 68.2 2.6 9E-05 28.5 2.0 23 124-146 13-37 (73)
10 3t7l_A Zinc finger FYVE domain 67.3 5.9 0.0002 27.9 3.9 25 122-146 20-46 (90)
11 1joc_A EEA1, early endosomal a 66.8 2.7 9.4E-05 31.7 2.1 25 122-146 69-95 (125)
12 1dvp_A HRS, hepatocyte growth 65.7 4.9 0.00017 33.3 3.7 25 122-146 161-187 (220)
13 1wfl_A Zinc finger protein 216 62.9 9.9 0.00034 25.8 4.0 38 122-160 25-67 (74)
14 2cr8_A MDM4 protein; ZF-ranbp 48.8 6.9 0.00024 24.4 1.3 21 124-144 13-33 (53)
15 2c6a_A Ubiquitin-protein ligas 42.8 9.2 0.00031 23.4 1.1 21 124-144 15-35 (46)
16 2dkt_A Ring finger and CHY zin 42.3 6.6 0.00023 30.3 0.6 40 122-161 83-126 (143)
17 2knc_B Integrin beta-3; transm 42.0 26 0.0009 24.0 3.6 21 224-244 26-46 (79)
18 1wil_A KIAA1045 protein; ring 38.7 25 0.00084 24.5 2.9 26 121-146 14-39 (89)
19 2jrp_A Putative cytoplasmic pr 32.8 21 0.00073 24.6 1.8 19 125-144 21-39 (81)
20 2vrw_B P95VAV, VAV1, proto-onc 32.1 24 0.00081 31.7 2.6 28 121-148 356-386 (406)
21 2jne_A Hypothetical protein YF 31.3 21 0.00073 25.5 1.7 26 122-147 32-59 (101)
22 1wfh_A Zinc finger (AN1-like) 28.7 65 0.0022 21.1 3.6 39 122-161 15-58 (64)
23 3arc_I Photosystem II reaction 24.7 1.1E+02 0.0037 17.7 4.0 11 99-109 25-35 (38)
24 3mpx_A FYVE, rhogef and PH dom 24.5 16 0.00054 33.1 0.0 24 122-145 375-400 (434)
25 1wff_A Riken cDNA 2810002D23 p 24.4 55 0.0019 22.7 2.8 36 122-158 25-66 (85)
26 1wg2_A Zinc finger (AN1-like) 23.8 73 0.0025 20.9 3.1 39 122-161 15-58 (64)
27 3u5e_m 60S ribosomal protein L 23.8 20 0.0007 26.6 0.5 25 121-145 92-118 (128)
28 3gj3_B Nuclear pore complex pr 23.5 35 0.0012 19.2 1.3 19 125-143 10-28 (33)
29 2elu_A Zinc finger protein 406 21.0 25 0.00085 19.7 0.4 8 137-144 10-17 (37)
No 1
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=77.72 E-value=0.43 Score=30.22 Aligned_cols=27 Identities=7% Similarity=-0.053 Sum_probs=23.2
Q ss_pred CCCCCCCCCCCCCCccccccccCceee
Q 022987 121 LGVDPDNENSLSRKRVRYCKICKAHVE 147 (289)
Q Consensus 121 ~~~~C~~C~~~kP~Rs~HC~~C~~CV~ 147 (289)
...+|+.|....|+++..|+.||.--+
T Consensus 13 ~k~iCpkC~a~~~~gaw~CrKCG~~~l 39 (51)
T 3j21_g 13 KKYVCLRCGATNPWGAKKCRKCGYKRL 39 (51)
T ss_dssp SEEECTTTCCEECTTCSSCSSSSSCCC
T ss_pred CCccCCCCCCcCCCCceecCCCCCccc
Confidence 467899999999999999999987533
No 2
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=77.34 E-value=2 Score=30.00 Aligned_cols=26 Identities=12% Similarity=0.172 Sum_probs=19.1
Q ss_pred CCCCCCCCCCC--CCCccccccccCcee
Q 022987 121 LGVDPDNENSL--SRKRVRYCKICKAHV 146 (289)
Q Consensus 121 ~~~~C~~C~~~--kP~Rs~HC~~C~~CV 146 (289)
....|..|+.. .-.|-|||+.||+-+
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 47 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVL 47 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEE
Confidence 35678888754 245889999998754
No 3
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=77.06 E-value=1.2 Score=33.50 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=18.0
Q ss_pred CCCCCCCCCC--CCCccccccccCcee
Q 022987 122 GVDPDNENSL--SRKRVRYCKICKAHV 146 (289)
Q Consensus 122 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 146 (289)
...|..|... ...|-|||+.||+.+
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~if 45 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNF 45 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEE
T ss_pred cCcccCcCCccccccccccCCCCCCee
Confidence 4568888753 346899999998843
No 4
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.69 E-value=2 Score=29.92 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=18.8
Q ss_pred CCCCCCCCCC--CCCccccccccCcee
Q 022987 122 GVDPDNENSL--SRKRVRYCKICKAHV 146 (289)
Q Consensus 122 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 146 (289)
...|..|+.. .-.|-|||+.||+-+
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vf 40 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSF 40 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEE
Confidence 5578888754 346899999998754
No 5
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=76.21 E-value=1.2 Score=28.64 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=23.5
Q ss_pred CCCCCCCCCCCCCCccccccccCceeec
Q 022987 121 LGVDPDNENSLSRKRVRYCKICKAHVEG 148 (289)
Q Consensus 121 ~~~~C~~C~~~kP~Rs~HC~~C~~CV~r 148 (289)
...+|..|...-|+|+..|+.||.--+|
T Consensus 18 ~k~ICrkC~ARnp~~A~~CRKCg~~~LR 45 (56)
T 2ayj_A 18 LKKVCRKCGALNPIRATKCRRCHSTNLR 45 (56)
T ss_dssp CCEEETTTCCEECTTCSSCTTTCCCCEE
T ss_pred chhhhccccCcCCcccccccCCCCCCCC
Confidence 4668999999999999999999865443
No 6
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=72.42 E-value=2.6 Score=29.27 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=18.6
Q ss_pred CCCCCCCCCC--CCCccccccccCcee
Q 022987 122 GVDPDNENSL--SRKRVRYCKICKAHV 146 (289)
Q Consensus 122 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 146 (289)
...|..|... .-.|-|||+.||+-+
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 45 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIF 45 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCcccCcCCcccCccccccCCCCCCEE
Confidence 4568888753 345889999998854
No 7
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=70.00 E-value=3.1 Score=29.31 Aligned_cols=25 Identities=16% Similarity=0.001 Sum_probs=18.7
Q ss_pred CCCCCCCCCC--CCCccccccccCcee
Q 022987 122 GVDPDNENSL--SRKRVRYCKICKAHV 146 (289)
Q Consensus 122 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 146 (289)
...|..|... .-.|-|||+.||+-+
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vf 35 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAF 35 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEE
T ss_pred CCCCcCcCCcccCccccccCCCCCCEE
Confidence 4568888753 346899999998854
No 8
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=69.96 E-value=2.6 Score=35.21 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=17.8
Q ss_pred CCCCCCCCCC--CCCccccccccCcee
Q 022987 122 GVDPDNENSL--SRKRVRYCKICKAHV 146 (289)
Q Consensus 122 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 146 (289)
...|..|+.. .-.|-|||+.||+.+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~ 190 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIF 190 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEe
Confidence 3468888742 234789999998854
No 9
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=68.21 E-value=2.6 Score=28.50 Aligned_cols=23 Identities=13% Similarity=0.089 Sum_probs=17.3
Q ss_pred CCCCCCCC--CCCccccccccCcee
Q 022987 124 DPDNENSL--SRKRVRYCKICKAHV 146 (289)
Q Consensus 124 ~C~~C~~~--kP~Rs~HC~~C~~CV 146 (289)
.|..|... .-.|-|||+.||+-+
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGVF 37 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred cccCCCCccCCccccccCCCCCEEE
Confidence 58888754 345889999998854
No 10
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=67.31 E-value=5.9 Score=27.92 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=18.1
Q ss_pred CCCCCCCCCC--CCCccccccccCcee
Q 022987 122 GVDPDNENSL--SRKRVRYCKICKAHV 146 (289)
Q Consensus 122 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 146 (289)
...|..|... .-.|-|||+.||.-+
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~ 46 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVF 46 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEE
Confidence 4568888753 245889999998754
No 11
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=66.76 E-value=2.7 Score=31.71 Aligned_cols=25 Identities=12% Similarity=0.037 Sum_probs=18.6
Q ss_pred CCCCCCCCCC--CCCccccccccCcee
Q 022987 122 GVDPDNENSL--SRKRVRYCKICKAHV 146 (289)
Q Consensus 122 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 146 (289)
...|..|... ...|-|||+.||+-+
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vf 95 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIF 95 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEE
Confidence 4568888754 346899999999754
No 12
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=65.65 E-value=4.9 Score=33.28 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=18.3
Q ss_pred CCCCCCCCCC--CCCccccccccCcee
Q 022987 122 GVDPDNENSL--SRKRVRYCKICKAHV 146 (289)
Q Consensus 122 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 146 (289)
...|..|+.. .-.|-|||+.||+.+
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~ 187 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVF 187 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEE
Confidence 3568888753 345889999998854
No 13
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=62.86 E-value=9.9 Score=25.81 Aligned_cols=38 Identities=13% Similarity=0.065 Sum_probs=25.2
Q ss_pred CCCCCCCCCCCCCccccccccCc--ee-ecc--Ccccccccccc
Q 022987 122 GVDPDNENSLSRKRVRYCKICKA--HV-EGF--DHHCPAFGNCI 160 (289)
Q Consensus 122 ~~~C~~C~~~kP~Rs~HC~~C~~--CV-~r~--DHHC~wl~nCI 160 (289)
..-|..|+...-.-...|+ |+. |- .|+ ||.|++--.-.
T Consensus 25 ~nRC~~CrKkvgL~gf~Cr-Cg~~FCs~HRy~e~H~C~fDyk~~ 67 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTGFDCR-CGNLFCGLHRYSDKHNCPYDYKAE 67 (74)
T ss_dssp TTBCSSSCCBCGGGCEECT-TSCEECSSSCSTTTTTCCCCGGGT
T ss_pred CCcChhhCCcccccCeecC-CCCEechhcCCCccCCCcchhhhh
Confidence 4569999887555568898 875 32 333 89888754433
No 14
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=48.83 E-value=6.9 Score=24.44 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=17.4
Q ss_pred CCCCCCCCCCCccccccccCc
Q 022987 124 DPDNENSLSRKRVRYCKICKA 144 (289)
Q Consensus 124 ~C~~C~~~kP~Rs~HC~~C~~ 144 (289)
.|..|+..-||--.||..|-.
T Consensus 13 kC~~C~k~N~Pl~ryC~rCwa 33 (53)
T 2cr8_A 13 QCTECKKFNSPSKRYCFRCWA 33 (53)
T ss_dssp ECSSSCCEECSSCCBCTTTCC
T ss_pred ecccccccCCCccchhHHHHH
Confidence 399999998998888887754
No 15
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=42.76 E-value=9.2 Score=23.36 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=17.5
Q ss_pred CCCCCCCCCCCccccccccCc
Q 022987 124 DPDNENSLSRKRVRYCKICKA 144 (289)
Q Consensus 124 ~C~~C~~~kP~Rs~HC~~C~~ 144 (289)
.|..|+..-||--.||..|-.
T Consensus 15 kC~~C~~~N~Pl~r~C~rCw~ 35 (46)
T 2c6a_A 15 KCTSCNEMNPPLPSHCNRCWA 35 (46)
T ss_dssp ECTTTCCEECSSCSSCTTTCC
T ss_pred ecccccccCCCccchhhHHHh
Confidence 499999999998888887754
No 16
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=42.25 E-value=6.6 Score=30.32 Aligned_cols=40 Identities=18% Similarity=0.231 Sum_probs=23.5
Q ss_pred CCCCCCCCCCCCC-ccccccccCceeec---cCccccccccccc
Q 022987 122 GVDPDNENSLSRK-RVRYCKICKAHVEG---FDHHCPAFGNCIG 161 (289)
Q Consensus 122 ~~~C~~C~~~kP~-Rs~HC~~C~~CV~r---~DHHC~wl~nCIG 161 (289)
.-+|..|+.+.+. ...||..||-|..+ ---||.--|.|+.
T Consensus 83 ~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s 126 (143)
T 2dkt_A 83 EYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLT 126 (143)
T ss_dssp SEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEE
T ss_pred eeEeceeecccCCCceecCCCCCceeccCCcCcEECCcCCeeec
Confidence 4457778776443 45677777777654 1235655555543
No 17
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=42.02 E-value=26 Score=23.97 Aligned_cols=21 Identities=10% Similarity=0.279 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHhCchhHHh
Q 022987 224 QAVFFMWHIYCVCFNVRTDEW 244 (289)
Q Consensus 224 ~~~ll~~h~~li~~n~Tt~E~ 244 (289)
+..++++-+..-..+.--++.
T Consensus 26 llllliwk~~~~i~DrrE~~k 46 (79)
T 2knc_B 26 LAALLIWKLLITIHDRKEFAK 46 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444544444444443333
No 18
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=38.74 E-value=25 Score=24.51 Aligned_cols=26 Identities=12% Similarity=0.151 Sum_probs=21.7
Q ss_pred CCCCCCCCCCCCCCccccccccCcee
Q 022987 121 LGVDPDNENSLSRKRVRYCKICKAHV 146 (289)
Q Consensus 121 ~~~~C~~C~~~kP~Rs~HC~~C~~CV 146 (289)
....|+.|..+.-.--.-|++|+|+-
T Consensus 14 ~D~~C~VC~~~t~~~l~pCRvC~Rvf 39 (89)
T 1wil_A 14 NDEMCDVCEVWTAESLFPCRVCTRVF 39 (89)
T ss_dssp CSCCCTTTCCCCSSCCSSCSSSSSCC
T ss_pred CCcccCccccccccceeccccccccc
Confidence 35689999999888888899999863
No 19
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=32.82 E-value=21 Score=24.64 Aligned_cols=19 Identities=11% Similarity=0.186 Sum_probs=8.9
Q ss_pred CCCCCCCCCCccccccccCc
Q 022987 125 PDNENSLSRKRVRYCKICKA 144 (289)
Q Consensus 125 C~~C~~~kP~Rs~HC~~C~~ 144 (289)
|..|+..-++.+ .|+.|++
T Consensus 21 C~~C~~~~~~~a-fCPeCgq 39 (81)
T 2jrp_A 21 CETCAKDFSLQA-LCPDCRQ 39 (81)
T ss_dssp CTTTCCEEEEEE-ECSSSCS
T ss_pred CccccccCCCcc-cCcchhh
Confidence 445544444444 4444443
No 20
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=32.11 E-value=24 Score=31.72 Aligned_cols=28 Identities=14% Similarity=0.039 Sum_probs=21.3
Q ss_pred CCCCCCCCCCCC---CCccccccccCceeec
Q 022987 121 LGVDPDNENSLS---RKRVRYCKICKAHVEG 148 (289)
Q Consensus 121 ~~~~C~~C~~~k---P~Rs~HC~~C~~CV~r 148 (289)
....|..|...- -.|-|||+.|+..|-+
T Consensus 356 ~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~ 386 (406)
T 2vrw_B 356 ETTSCKACQMLLRGTFYQGYRCYRCRAPAHK 386 (406)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTCCEECG
T ss_pred CCCCCccccchhceeCCCCCCCCCCcCccch
Confidence 467899998643 4688999999876654
No 21
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=31.35 E-value=21 Score=25.48 Aligned_cols=26 Identities=12% Similarity=0.258 Sum_probs=17.7
Q ss_pred CCCCCCCCCCC--CCccccccccCceee
Q 022987 122 GVDPDNENSLS--RKRVRYCKICKAHVE 147 (289)
Q Consensus 122 ~~~C~~C~~~k--P~Rs~HC~~C~~CV~ 147 (289)
...|+.|+... -.+.+||..|++-+.
T Consensus 32 ~~~CP~Cq~eL~~~g~~~hC~~C~~~f~ 59 (101)
T 2jne_A 32 ELHCPQCQHVLDQDNGHARCRSCGEFIE 59 (101)
T ss_dssp CCBCSSSCSBEEEETTEEEETTTCCEEE
T ss_pred cccCccCCCcceecCCEEECccccchhh
Confidence 36799998553 234667998888544
No 22
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=28.67 E-value=65 Score=21.08 Aligned_cols=39 Identities=13% Similarity=0.070 Sum_probs=24.9
Q ss_pred CCCCCCCCCCCCCccccccccCc--ee-ecc--Cccccccccccc
Q 022987 122 GVDPDNENSLSRKRVRYCKICKA--HV-EGF--DHHCPAFGNCIG 161 (289)
Q Consensus 122 ~~~C~~C~~~kP~Rs~HC~~C~~--CV-~r~--DHHC~wl~nCIG 161 (289)
..-|..|+.....-...|+ |+. |- .|+ ||.|++--.-.|
T Consensus 15 ~~rC~~C~kkvgl~~f~Cr-Cg~~FC~~HRy~e~H~C~fDyk~~g 58 (64)
T 1wfh_A 15 PNRCTVCRKRVGLTGFMCR-CGTTFCGSHRYPEVHGCTFDFKSAG 58 (64)
T ss_dssp CCCCTTTCCCCCTTCEECS-SSCEECTTTCSTTTTTCCCCCSCCC
T ss_pred CCcChhhCCccCccCEEee-cCCEeccccCCcccCCCCchhhHHH
Confidence 5679999886555468884 765 32 233 888886544333
No 23
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=24.68 E-value=1.1e+02 Score=17.67 Aligned_cols=11 Identities=27% Similarity=0.211 Sum_probs=8.6
Q ss_pred hcCCCccCCCC
Q 022987 99 SKDPGLITNEF 109 (289)
Q Consensus 99 ~~DPG~vp~~~ 109 (289)
..|||.-|...
T Consensus 25 snDP~RNP~rk 35 (38)
T 3arc_I 25 SGDPARNPKRK 35 (38)
T ss_dssp TTGGGCSSSCC
T ss_pred CCCCCCCCCcc
Confidence 58999988754
No 24
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=24.46 E-value=16 Score=33.13 Aligned_cols=24 Identities=17% Similarity=0.034 Sum_probs=0.0
Q ss_pred CCCCCCCCCC--CCCccccccccCce
Q 022987 122 GVDPDNENSL--SRKRVRYCKICKAH 145 (289)
Q Consensus 122 ~~~C~~C~~~--kP~Rs~HC~~C~~C 145 (289)
...|..|... .-.|-|||+.||+.
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~ 400 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKI 400 (434)
T ss_dssp --------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCE
Confidence 3457777642 23467888888874
No 25
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=24.42 E-value=55 Score=22.72 Aligned_cols=36 Identities=11% Similarity=-0.059 Sum_probs=24.9
Q ss_pred CCCCCCCCCCCCC-ccccccccCc--ee---eccCcccccccc
Q 022987 122 GVDPDNENSLSRK-RVRYCKICKA--HV---EGFDHHCPAFGN 158 (289)
Q Consensus 122 ~~~C~~C~~~kP~-Rs~HC~~C~~--CV---~r~DHHC~wl~n 158 (289)
...|..|+..... ...+|+ |+. |- .--||.|+.--.
T Consensus 25 ~~rC~~C~kkvgl~~~f~Cr-Cg~~FC~~HRy~e~H~C~fDyK 66 (85)
T 1wff_A 25 MKHCFLCGKKTGLATSFECR-CGNNFCASHRYAEAHGCNYDYK 66 (85)
T ss_dssp CCBCSSSCCBCSSSSCEECT-TCCEECTTTCSTGGGTCCSCCS
T ss_pred CccchhhCCeecccCCeEcC-CCCEecccCCCccCCCCcchhh
Confidence 5679999987766 478887 765 33 234898986543
No 26
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=23.83 E-value=73 Score=20.86 Aligned_cols=39 Identities=15% Similarity=0.020 Sum_probs=24.5
Q ss_pred CCCCCCCCCCCCCccccccccCc--ee-ec--cCccccccccccc
Q 022987 122 GVDPDNENSLSRKRVRYCKICKA--HV-EG--FDHHCPAFGNCIG 161 (289)
Q Consensus 122 ~~~C~~C~~~kP~Rs~HC~~C~~--CV-~r--~DHHC~wl~nCIG 161 (289)
..-|..|+...-.-...| .|+. |- .| -||.|++--.-.|
T Consensus 15 ~~rC~~C~kkvgl~~f~C-rCg~~FC~~HR~~e~H~C~fDyk~~g 58 (64)
T 1wg2_A 15 NNRCFSCNKKVGVMGFKC-KCGSTFCGSHRYPEKHECSFDFKEVG 58 (64)
T ss_dssp SCSCTTTCCCCTTSCEEC-TTSCEECSSSCSSTTTTCCCCCSCSC
T ss_pred CCcChhhCCcccccCeEe-ecCCEecccCCCccccCCCcchhHHh
Confidence 467999988654446778 5765 32 33 3899986544333
No 27
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=23.78 E-value=20 Score=26.63 Aligned_cols=25 Identities=12% Similarity=0.054 Sum_probs=21.4
Q ss_pred CCCCCCCCCCCCCCccccccc--cCce
Q 022987 121 LGVDPDNENSLSRKRVRYCKI--CKAH 145 (289)
Q Consensus 121 ~~~~C~~C~~~kP~Rs~HC~~--C~~C 145 (289)
...+|..|..+-|+|+..|+. ||..
T Consensus 92 ~~~ic~~~~~~~~~~~~~~~~~~c~~~ 118 (128)
T 3u5e_m 92 DKSVCRKCYARLPPRATNCRKRKCGHT 118 (128)
T ss_dssp SCEEETTTCCEECTTCSSCSCTTTTSC
T ss_pred ceEeeccccccCCchhhccchhhCCCc
Confidence 357899999999999999994 8764
No 28
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=23.49 E-value=35 Score=19.18 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=14.2
Q ss_pred CCCCCCCCCCccccccccC
Q 022987 125 PDNENSLSRKRVRYCKICK 143 (289)
Q Consensus 125 C~~C~~~kP~Rs~HC~~C~ 143 (289)
|+.|...-++.+.+|..|+
T Consensus 10 C~~C~~~N~~~~~kC~aC~ 28 (33)
T 3gj3_B 10 CDTCLVQNKPEAVKCVACE 28 (33)
T ss_dssp CTTTCCEECTTCSBCTTTC
T ss_pred CCcccCCCccccCEEcccC
Confidence 7777777777777777775
No 29
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=21.04 E-value=25 Score=19.66 Aligned_cols=8 Identities=38% Similarity=1.198 Sum_probs=6.3
Q ss_pred ccccccCc
Q 022987 137 RYCKICKA 144 (289)
Q Consensus 137 ~HC~~C~~ 144 (289)
.||+.|++
T Consensus 10 qhcrfckk 17 (37)
T 2elu_A 10 QHCRFCKK 17 (37)
T ss_dssp CEETTTTE
T ss_pred HHHHHHHH
Confidence 58888876
Done!