BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022988
(289 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LHP|A Chain A, Crystal Structure Of Pyridoxal Kinase From Sheep Brain
pdb|1LHP|B Chain B, Crystal Structure Of Pyridoxal Kinase From Sheep Brain
pdb|1LHR|A Chain A, Crystal Structure Of Pyridoxal Kinase Complexed With Atp
pdb|1LHR|B Chain B, Crystal Structure Of Pyridoxal Kinase Complexed With Atp
pdb|1RFT|A Chain A, Crystal Structure Of Pyridoxal Kinase Complexed With Amp-
Pcp And Pyridoxamine
pdb|1RFU|A Chain A, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|B Chain B, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|C Chain C, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|D Chain D, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|E Chain E, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|F Chain F, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|G Chain G, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|H Chain H, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFV|A Chain A, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
pdb|1RFV|B Chain B, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
pdb|1YGJ|A Chain A, Crystal Structure Of Pyridoxal Kinase In Complex With
Roscovitine And Derivatives
pdb|1YGK|A Chain A, Crystal Structure Of Pyridoxal Kinase In Complex With
Roscovitine And Derivatives
pdb|1YHJ|A Chain A, Crystal Structure Of Pyridoxal Kinase In Complex With
Roscovitine And Derivatives
Length = 312
Score = 271 bits (693), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 140/303 (46%), Positives = 195/303 (64%), Gaps = 34/303 (11%)
Query: 13 ETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQL 72
E RVLSIQSH V+GYVGN++A FPLQ+LG++VD ++SVQFSNHTGY +KGQVLN +L
Sbjct: 3 EECRVLSIQSHVVRGYVGNRAATFPLQVLGFEVDAVNSVQFSNHTGYSHWKGQVLNSDEL 62
Query: 73 CDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD---- 128
+L +GL+ N++ Y ++LTGY SFL ++ +V++L+ NP L+YVCDPVMGD
Sbjct: 63 QELYDGLKLNHVNQYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVMGDQRNG 122
Query: 129 EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAK 188
EG +YVP +L+ VYREKVVPVA ++TPNQFEAE LTG +I S+ + E +LH+ GP
Sbjct: 123 EGAMYVPDDLLPVYREKVVPVADIITPNQFEAELLTGRKIHSQEEALEVMDMLHSMGPDT 182
Query: 189 VVITSINI-----DGNLFLIGSHQKEK----------------------GTGDLMTALLL 221
VVITS N+ L +GS + GTGDL A+LL
Sbjct: 183 VVITSSNLLSPRGSDYLMALGSQRTRAPDGSVVTQRIRMEMHKVDAVFVGTGDLFAAMLL 242
Query: 222 GWSNKYRDNLDIAAELAVSSLQALLQRTVNDYVTA---GFDPQSSSLEIRLIQSQDDIRN 278
W++K+ +NL +A E VS++ +LQRT+ G P + LE+R++QS+ DI +
Sbjct: 243 AWTHKHPNNLKVACEKTVSAMHHVLQRTIKCAKAKSGEGVKPSPAQLELRMVQSKKDIES 302
Query: 279 PQV 281
P++
Sbjct: 303 PEI 305
>pdb|2YXT|A Chain A, Human Pyridoxal Kinase
pdb|2YXT|B Chain B, Human Pyridoxal Kinase
pdb|2YXU|A Chain A, Human Pyridoxal Kinase
pdb|2YXU|B Chain B, Human Pyridoxal Kinase
pdb|3KEU|A Chain A, Crystal Structure Of Human Pl Kinase With Bound Plp And
Atp
pdb|3KEU|B Chain B, Crystal Structure Of Human Pl Kinase With Bound Plp And
Atp
pdb|4EN4|A Chain A, Crystal Structure Of The Ternary Human Pl
Kinase-Ginkgotoxin-Mgatp Complex
pdb|4EN4|B Chain B, Crystal Structure Of The Ternary Human Pl
Kinase-Ginkgotoxin-Mgatp Complex
pdb|4EOH|A Chain A, Crystal Structure Of Human Pl Kinase With Bound
Theophylline
pdb|4EOH|B Chain B, Crystal Structure Of Human Pl Kinase With Bound
Theophylline
Length = 312
Score = 266 bits (680), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 135/303 (44%), Positives = 194/303 (64%), Gaps = 34/303 (11%)
Query: 13 ETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQL 72
E RVLSIQSH ++GYVGN++A FPLQ+LG+++D ++SVQFSNHTGY +KGQVLN +L
Sbjct: 3 EECRVLSIQSHVIRGYVGNRAATFPLQVLGFEIDAVNSVQFSNHTGYAHWKGQVLNSDEL 62
Query: 73 CDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD---- 128
+L EGL NN+ Y ++LTGY SFL ++ +V++L+ NP L+YVCDPV+GD
Sbjct: 63 QELYEGLRLNNMNKYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVLGDKWDG 122
Query: 129 EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAK 188
EG +YVP +L+ VY+EKVVP+A ++TPNQFEAE L+G +I S+ + +LH+ GP
Sbjct: 123 EGSMYVPEDLLPVYKEKVVPLADIITPNQFEAELLSGRKIHSQEEALRVMDMLHSMGPDT 182
Query: 189 VVITSINI-----DGNLFLIGSHQKEK----------------------GTGDLMTALLL 221
VVITS ++ L ++GS ++ GTGDL A+LL
Sbjct: 183 VVITSSDLPSPQGSNYLIVLGSQRRRNPAGSVVMERIRMDIRKVDAVFVGTGDLFAAMLL 242
Query: 222 GWSNKYRDNLDIAAELAVSSLQALLQRTV---NDYVTAGFDPQSSSLEIRLIQSQDDIRN 278
W++K+ +NL +A E VS+L +LQRT+ G P LE+R++QS+ DI +
Sbjct: 243 AWTHKHPNNLKVACEKTVSTLHHVLQRTIQCAKAQAGEGVRPSPMQLELRMVQSKRDIED 302
Query: 279 PQV 281
P++
Sbjct: 303 PEI 305
>pdb|2F7K|A Chain A, Crystal Structure Of Human Pyridoxal Kinase
pdb|2F7K|B Chain B, Crystal Structure Of Human Pyridoxal Kinase
Length = 327
Score = 266 bits (679), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 135/303 (44%), Positives = 194/303 (64%), Gaps = 34/303 (11%)
Query: 13 ETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQL 72
E RVLSIQSH ++GYVGN++A FPLQ+LG+++D ++SVQFSNHTGY +KGQVLN +L
Sbjct: 18 EECRVLSIQSHVIRGYVGNRAATFPLQVLGFEIDAVNSVQFSNHTGYAHWKGQVLNSDEL 77
Query: 73 CDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD---- 128
+L EGL NN+ Y ++LTGY SFL ++ +V++L+ NP L+YVCDPV+GD
Sbjct: 78 QELYEGLRLNNMNKYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVLGDKWDG 137
Query: 129 EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAK 188
EG +YVP +L+ VY+EKVVP+A ++TPNQFEAE L+G +I S+ + +LH+ GP
Sbjct: 138 EGSMYVPEDLLPVYKEKVVPLADIITPNQFEAELLSGRKIHSQEEALRVMDMLHSMGPDT 197
Query: 189 VVITSINI-----DGNLFLIGSHQKEK----------------------GTGDLMTALLL 221
VVITS ++ L ++GS ++ GTGDL A+LL
Sbjct: 198 VVITSSDLPSPQGSNYLIVLGSQRRRNPAGSVVMERIRMDIRKVDAVFVGTGDLFAAMLL 257
Query: 222 GWSNKYRDNLDIAAELAVSSLQALLQRTV---NDYVTAGFDPQSSSLEIRLIQSQDDIRN 278
W++K+ +NL +A E VS+L +LQRT+ G P LE+R++QS+ DI +
Sbjct: 258 AWTHKHPNNLKVACEKTVSTLHHVLQRTIQCAKAQAGEGVRPSPMQLELRMVQSKRDIED 317
Query: 279 PQV 281
P++
Sbjct: 318 PEI 320
>pdb|2AJP|A Chain A, Crystal Structure Of A Human Pyridoxal Kinase
pdb|2AJP|B Chain B, Crystal Structure Of A Human Pyridoxal Kinase
Length = 326
Score = 265 bits (676), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 134/300 (44%), Positives = 193/300 (64%), Gaps = 34/300 (11%)
Query: 16 RVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDL 75
RVLSIQSH ++GYVGN++A FPLQ+LG+++D ++SVQFSNHTGY +KGQVLN +L +L
Sbjct: 20 RVLSIQSHVIRGYVGNRAATFPLQVLGFEIDAVNSVQFSNHTGYAHWKGQVLNSDELQEL 79
Query: 76 IEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD----EGK 131
EGL NN+ Y ++LTGY SFL ++ +V++L+ NP L+YVCDPV+GD EG
Sbjct: 80 YEGLRLNNMNKYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVLGDKWDGEGS 139
Query: 132 LYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVI 191
+YVP +L+ VY+EKVVP+A ++TPNQFEAE L+G +I S+ + +LH+ GP VVI
Sbjct: 140 MYVPEDLLPVYKEKVVPLADIITPNQFEAELLSGRKIHSQEEALRVMDMLHSMGPDTVVI 199
Query: 192 TSINI-----DGNLFLIGSHQKEK----------------------GTGDLMTALLLGWS 224
TS ++ L ++GS ++ GTGDL A+LL W+
Sbjct: 200 TSSDLPSPQGSNYLIVLGSQRRRNPAGSVVMERIRMDIRKVDAVFVGTGDLFAAMLLAWT 259
Query: 225 NKYRDNLDIAAELAVSSLQALLQRTV---NDYVTAGFDPQSSSLEIRLIQSQDDIRNPQV 281
+K+ +NL +A E VS+L +LQRT+ G P LE+R++QS+ DI +P++
Sbjct: 260 HKHPNNLKVACEKTVSTLHHVLQRTIQCAKAQAGEGVRPSPMQLELRMVQSKRDIEDPEI 319
>pdb|3FHY|A Chain A, Crystal Structure Of D235n Mutant Of Human Pyridoxal
Kinase
pdb|3FHY|B Chain B, Crystal Structure Of D235n Mutant Of Human Pyridoxal
Kinase
Length = 312
Score = 264 bits (675), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 134/303 (44%), Positives = 194/303 (64%), Gaps = 34/303 (11%)
Query: 13 ETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQL 72
E RVLSIQSH ++GYVGN++A FPLQ+LG+++D ++SVQFSNHTGY +KGQVLN +L
Sbjct: 3 EECRVLSIQSHVIRGYVGNRAATFPLQVLGFEIDAVNSVQFSNHTGYAHWKGQVLNSDEL 62
Query: 73 CDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD---- 128
+L EGL NN+ Y ++LTGY SFL ++ +V++L+ NP L+YVCDPV+GD
Sbjct: 63 QELYEGLRLNNMNKYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVLGDKWDG 122
Query: 129 EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAK 188
EG +YVP +L+ VY+EKVVP+A ++TPNQFEAE L+G +I S+ + +LH+ GP
Sbjct: 123 EGSMYVPEDLLPVYKEKVVPLADIITPNQFEAELLSGRKIHSQEEALRVMDMLHSMGPDT 182
Query: 189 VVITSINI-----DGNLFLIGSHQKEK----------------------GTGDLMTALLL 221
VVITS ++ L ++GS ++ GTG+L A+LL
Sbjct: 183 VVITSSDLPSPQGSNYLIVLGSQRRRNPAGSVVMERIRMDIRKVDAVFVGTGNLFAAMLL 242
Query: 222 GWSNKYRDNLDIAAELAVSSLQALLQRTV---NDYVTAGFDPQSSSLEIRLIQSQDDIRN 278
W++K+ +NL +A E VS+L +LQRT+ G P LE+R++QS+ DI +
Sbjct: 243 AWTHKHPNNLKVACEKTVSTLHHVLQRTIQCAKAQAGEGVRPSPMQLELRMVQSKRDIED 302
Query: 279 PQV 281
P++
Sbjct: 303 PEI 305
>pdb|3FHX|A Chain A, Crystal Structure Of D235a Mutant Of Human Pyridoxal
Kinase
pdb|3FHX|B Chain B, Crystal Structure Of D235a Mutant Of Human Pyridoxal
Kinase
Length = 312
Score = 263 bits (672), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 134/303 (44%), Positives = 193/303 (63%), Gaps = 34/303 (11%)
Query: 13 ETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQL 72
E RVLSIQSH ++GYVGN++A FPLQ+LG+++D ++SVQFSNHTGY +KGQVLN +L
Sbjct: 3 EECRVLSIQSHVIRGYVGNRAATFPLQVLGFEIDAVNSVQFSNHTGYAHWKGQVLNSDEL 62
Query: 73 CDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD---- 128
+L EGL NN+ Y ++LTGY SFL ++ +V++L+ NP L+YVCDPV+GD
Sbjct: 63 QELYEGLRLNNMNKYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVLGDKWDG 122
Query: 129 EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAK 188
EG +YVP +L+ VY+EKVVP+A ++TPNQFEAE L+G +I S+ + +LH+ GP
Sbjct: 123 EGSMYVPEDLLPVYKEKVVPLADIITPNQFEAELLSGRKIHSQEEALRVMDMLHSMGPDT 182
Query: 189 VVITSINI-----DGNLFLIGSHQKEK----------------------GTGDLMTALLL 221
VVITS ++ L ++GS ++ GTG L A+LL
Sbjct: 183 VVITSSDLPSPQGSNYLIVLGSQRRRNPAGSVVMERIRMDIRKVDAVFVGTGALFAAMLL 242
Query: 222 GWSNKYRDNLDIAAELAVSSLQALLQRTV---NDYVTAGFDPQSSSLEIRLIQSQDDIRN 278
W++K+ +NL +A E VS+L +LQRT+ G P LE+R++QS+ DI +
Sbjct: 243 AWTHKHPNNLKVACEKTVSTLHHVLQRTIQCAKAQAGEGVRPSPMQLELRMVQSKRDIED 302
Query: 279 PQV 281
P++
Sbjct: 303 PEI 305
>pdb|3ZS7|A Chain A, Crystal Structure Of Pyridoxal Kinase From Trypanosoma
Brucei
Length = 300
Score = 168 bits (425), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 107/292 (36%), Positives = 159/292 (54%), Gaps = 36/292 (12%)
Query: 17 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLI 76
VLSIQS GYVGNK+A FPLQL G+DVD I++V SNH+GYP +G ++ Q+ +L+
Sbjct: 6 VLSIQSFVTHGYVGNKAATFPLQLHGFDVDGINTVCLSNHSGYPVIRGHRMSLQEYDELM 65
Query: 77 EGLEANNLLY-YTHLLTGYIGSVSFLNTILQVVEKLRSI----NPNLIYVCDPVMGDEGK 131
EG+ ANN L Y ++LTGYI +V + I ++++R + + L ++CDPVMGD+G
Sbjct: 66 EGVRANNFLSNYRYILTGYINNVDIIGRIRDTLKEVRELREKEDKKLTFICDPVMGDDGI 125
Query: 132 LYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVI 191
+Y E++ YRE +VP+A ++TPN FEA L+G + + A H G A V+I
Sbjct: 126 MYCKKEVLDAYRE-LVPLADIVTPNYFEASLLSGVTVNDLSSAILAADWFHNCGVAHVII 184
Query: 192 TSINIDGN----LFLIGSHQ------------------KEKGTGDLMTALLLGWSNKYRD 229
S N FL + + GTGD+ A LL +S+ +
Sbjct: 185 KSFREQENPTHLRFLYSVKEGSEAAVRRFSGVVPYHEGRYTGTGDVFAACLLAFSHSHPM 244
Query: 230 NLDIAAELAVSSLQALLQRTVNDYVTAGFDPQSS--SLEIRLIQSQDDIRNP 279
++ I +AV LQ L+ T + G D +SS S E+R++ S + P
Sbjct: 245 DVAIGKSMAV--LQELIIATRKE----GGDGKSSLKSRELRVVASPQVVLQP 290
>pdb|3PZS|A Chain A, Crystal Structure Of A Pyridoxamine Kinase From Yersinia
Pestis Co92
pdb|3PZS|B Chain B, Crystal Structure Of A Pyridoxamine Kinase From Yersinia
Pestis Co92
Length = 289
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 144/293 (49%), Gaps = 37/293 (12%)
Query: 17 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLI 76
+LSIQSH V G+ GN +A FP + G +V P+++VQFSNHT Y + G V L D++
Sbjct: 7 ILSIQSHVVFGHAGNSAAEFPXRRXGVNVWPLNTVQFSNHTQYGHWTGCVXPASHLTDIV 66
Query: 77 EGL-EANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG--DEGKLY 133
+G+ + + L +L+GYIGS + IL V +++ NP+ Y CDPV G ++G +
Sbjct: 67 QGIADIDRLKDCDAVLSGYIGSPEQGSHILAAVAQVKQANPDAWYFCDPVXGHPEKGCIV 126
Query: 134 VPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITS 193
P + + + +P + + PN E EQL+G R+ + + + L A GP V++
Sbjct: 127 APG-VAEFFCNEALPASDXIAPNLLELEQLSGERVENVEQAVQVARSLCARGPKVVLVKH 185
Query: 194 INIDG------NLFLIGS--------------HQKEKGTGDLMTALLLGWSNKYR-DNLD 232
++ G L+ + ++ G GDL + LLL N + + LD
Sbjct: 186 LSRAGYHADCFEXLLVTADDAWHICRPLVDFGKRQPVGVGDLTSGLLL--VNLLKGEPLD 243
Query: 233 IAAELAVSSLQALLQRTVNDYVTAGFDPQSSSLEIRLIQSQDDIRNPQVKFKS 285
A E +++ + +T + E++++ +Q+ I P +F +
Sbjct: 244 KALEHVTAAVYEVXLKT----------QEXGEYELQVVAAQETIVTPICQFTA 286
>pdb|1TD2|A Chain A, Crystal Structure Of The Pdxy Protein From Escherichia
Coli
pdb|1TD2|B Chain B, Crystal Structure Of The Pdxy Protein From Escherichia
Coli
Length = 287
Score = 111 bits (278), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 145/300 (48%), Gaps = 47/300 (15%)
Query: 17 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLI 76
+L+IQSH V G+ GN +A FP++ LG +V P+++VQFSNHT Y + G V+ L +++
Sbjct: 5 ILAIQSHVVYGHAGNSAAEFPMRRLGANVWPLNTVQFSNHTQYGKWTGCVMPPSHLTEIV 64
Query: 77 EGLEANNLLYYTH-LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG--DEGKLY 133
+G+ A + L+ +L+GY+GS IL +V ++++ NP Y CDPVMG ++G +
Sbjct: 65 QGIAAIDKLHTCDAVLSGYLGSAEQGEHILGIVRQVKAANPQAKYFCDPVMGHPEKGCIV 124
Query: 134 VPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITS 193
P + + +P + ++ PN E E L + + + A + L A GP V++
Sbjct: 125 APG-VAEFHVRHGLPASDIIAPNLVELEILCEHAVNNVEEAVLAARELIAQGPQIVLVKH 183
Query: 194 INIDG------NLFLIGSHQ--------------KEKGTGDLMTALLLGWSNKYRDNLDI 233
+ G + L+ + + + G GD+ + LLL
Sbjct: 184 LARAGYSRDRFEMLLVTADEAWHISRPLVDFGMRQPVGVGDVTSGLLL------------ 231
Query: 234 AAELAVSSLQ-ALLQRTVNDYVTAGFDPQSSS-----LEIRLIQSQDDIRNPQVKFKSEK 287
V LQ A LQ + A ++ ++ E++++ +QD I P+ F + K
Sbjct: 232 -----VKLLQGATLQEALEHVTAAVYEIMVTTKAMQEYELQVVAAQDRIAKPEHYFSATK 286
>pdb|1VI9|A Chain A, Crystal Structure Of Pyridoxamine Kinase
pdb|1VI9|B Chain B, Crystal Structure Of Pyridoxamine Kinase
pdb|1VI9|C Chain C, Crystal Structure Of Pyridoxamine Kinase
pdb|1VI9|D Chain D, Crystal Structure Of Pyridoxamine Kinase
Length = 299
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 137/301 (45%), Gaps = 49/301 (16%)
Query: 17 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLI 76
+L+IQSH V G+ GN +A FP + LG +V P+++VQFSNHT Y + G V L +++
Sbjct: 7 ILAIQSHVVYGHAGNSAAEFPXRRLGANVWPLNTVQFSNHTQYGKWTGXVXPPSHLTEIV 66
Query: 77 EGLEANNLLYYTH-LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG--DEGKLY 133
+G+ A + L+ +L+GY+GS IL +V ++++ NP Y CDPV G ++G +
Sbjct: 67 QGIAAIDKLHTCDAVLSGYLGSAEQGEHILGIVRQVKAANPQAKYFCDPVXGHPEKGCIV 126
Query: 134 VPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITS 193
P + + +P + ++ PN E E L + + + A + L A GP V++
Sbjct: 127 APG-VAEFHVRHGLPASDIIAPNLVELEILCEHAVNNVEEAVLAARELIAQGPQIVLVKH 185
Query: 194 I---------------------NIDGNLFLIGSHQKEKGTGDLMTALLLGWSNKYRDNLD 232
+ +I L G Q G GD+ + LLL
Sbjct: 186 LARAGYSRDRFEXLLVTADEAWHISRPLVDFGXRQP-VGVGDVTSGLLL----------- 233
Query: 233 IAAELAVSSLQALLQRTVNDYVTAGF------DPQSSSLEIRLIQSQDDIRNPQVKFKSE 286
V LQ + ++VTA E++++ +QD I P+ F +
Sbjct: 234 ------VKLLQGATLQEALEHVTAAVYEIXVTTKAXQEYELQVVAAQDRIAKPEHYFSAT 287
Query: 287 K 287
K
Sbjct: 288 K 288
>pdb|2DDM|A Chain A, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene At 2.1 A Resolution
pdb|2DDM|B Chain B, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene At 2.1 A Resolution
pdb|2DDO|A Chain A, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene At 2.6 A Resolution
pdb|2DDO|B Chain B, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene At 2.6 A Resolution
pdb|2DDW|A Chain A, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene Complexed With Pyridoxal At 3.2 A
Resolution
pdb|2DDW|B Chain B, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene Complexed With Pyridoxal At 3.2 A
Resolution
Length = 283
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 109/223 (48%), Gaps = 18/223 (8%)
Query: 17 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLI 76
++++QS V G VGN AV ++ G +V + +V SN Y TF G + + +
Sbjct: 18 IVAVQSQVVYGSVGNSIAVPAIKQNGLNVFAVPTVLLSNTPHYDTFYGGAIPDEWFSGYL 77
Query: 77 EGL-EANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD-EGKLYV 134
L E + L + TGY+G+ S + + + + LR +P+L+ + DPV+GD + +YV
Sbjct: 78 RALQERDALRQLRAVTTGYMGTASQIKILAEWLTALRKDHPDLLIMVDPVIGDIDSGIYV 137
Query: 135 PSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITS- 193
+L YR+ ++P+A +TPN FE E LTG A K L + VV+TS
Sbjct: 138 KPDLPEAYRQYLLPLAQGITPNIFELEILTGKNCRDLDSAIAAAKSLLSDTLKWVVVTSA 197
Query: 194 -----------INIDGNLFLIGSHQKE----KGTGDLMTALLL 221
+ + + + SH + KGTGDL A L+
Sbjct: 198 SGNEENQEMQVVVVTADSVNVISHSRVKTDLKGTGDLFCAQLI 240
>pdb|3MBJ|A Chain A, Crystal Structure Of A Putative Phosphomethylpyrimidine
Kinase (Bt_4458) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.10 A Resolution (Rhombohedral Form)
pdb|3MBH|A Chain A, Crystal Structure Of A Putative Phosphomethylpyrimidine
Kinase (bt_4458) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.00 A Resolution (orthorhombic Form With
Pyridoxal)
pdb|3MBH|B Chain B, Crystal Structure Of A Putative Phosphomethylpyrimidine
Kinase (bt_4458) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.00 A Resolution (orthorhombic Form With
Pyridoxal)
pdb|3MBH|C Chain C, Crystal Structure Of A Putative Phosphomethylpyrimidine
Kinase (bt_4458) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.00 A Resolution (orthorhombic Form With
Pyridoxal)
pdb|3MBH|D Chain D, Crystal Structure Of A Putative Phosphomethylpyrimidine
Kinase (bt_4458) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.00 A Resolution (orthorhombic Form With
Pyridoxal)
pdb|3MBH|E Chain E, Crystal Structure Of A Putative Phosphomethylpyrimidine
Kinase (bt_4458) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.00 A Resolution (orthorhombic Form With
Pyridoxal)
pdb|3MBH|F Chain F, Crystal Structure Of A Putative Phosphomethylpyrimidine
Kinase (bt_4458) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.00 A Resolution (orthorhombic Form With
Pyridoxal)
Length = 291
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 97/215 (45%), Gaps = 31/215 (14%)
Query: 33 SAVFP-LQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLL 91
+ V P L G+ V P+ + SNHT YP F L + + E + + + +
Sbjct: 25 TVVIPILSSXGFQVCPLPTAVLSNHTQYPGFSFLDLTDEXPKIIAEWKKLE--VQFDAIY 82
Query: 92 TGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREK-VVPVA 150
TGY+GS + + ++ R P+ + V DPV+GD G+LY + V + ++ A
Sbjct: 83 TGYLGSPRQIQIVSDFIKDFR--QPDSLIVADPVLGDNGRLYTNFDXEXVKEXRHLITKA 140
Query: 151 SMLTPNQFEAEQLTG--FRIGS-EADGREACKILHAAGPAKVVITSI------------- 194
++TPN E L ++ S + + +E ++L GP V+ITS+
Sbjct: 141 DVITPNLTELFYLLDEPYKADSTDEELKEYLRLLSDKGPQVVIITSVPVHDEPHKTSVYA 200
Query: 195 -NIDGNLFL------IGSHQKEKGTGDLMTALLLG 222
N GN + + +H GTGD T+++ G
Sbjct: 201 YNRQGNRYWKVTCPYLPAHY--PGTGDTFTSVITG 233
>pdb|2I5B|A Chain A, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
pdb|2I5B|C Chain C, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
pdb|2I5B|D Chain D, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
pdb|2I5B|B Chain B, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
pdb|2I5B|E Chain E, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
Length = 271
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 57/107 (53%), Gaps = 10/107 (9%)
Query: 90 LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGK---LYVPSELVSVYREKV 146
+ TG + +V + + +++ + N V DPVM +G LY E RE++
Sbjct: 78 MKTGMLPTVDIIELAAKTIKEKQLKN----VVIDPVMVCKGANEVLY--PEHAQALREQL 131
Query: 147 VPVASMLTPNQFEAEQLTGF-RIGSEADGREACKILHAAGPAKVVIT 192
P+A+++TPN FEA QL+G + + D EA K +HA G VVIT
Sbjct: 132 APLATVITPNLFEASQLSGMDELKTVDDMIEAAKKIHALGAQYVVIT 178
>pdb|3H74|A Chain A, Crystal Structure Of Pyridoxal Kinase From Lactobacillus
Plantarum
pdb|3HYO|A Chain A, Crystal Structure Of Pyridoxal Kinase From Lactobacillus
Plantarum In Complex With Adp
pdb|3IBQ|A Chain A, Crystal Structure Of Pyridoxal Kinase From Lactobacillus
Plantarum In Complex With Atp
Length = 282
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 10/142 (7%)
Query: 27 GYVGNKSAVFPLQLLGYDVDPIHSVQFSNHT-GYPTFKGQVLNGQQLCDLIEGLEANNLL 85
G + SA+ L YDV + + S HT GY T V++ + L
Sbjct: 16 GGISLSSALPVLTAXQYDVAALPTSLLSTHTSGYGTPA--VVDLSTWLPQVFAHWTRAQL 73
Query: 86 YYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLY--VPSELVSVYR 143
++ L GY+GSV+ I +E+ ++++ + V DPV+GD G+LY + V+ R
Sbjct: 74 HFDQALIGYVGSVALCQQITTYLEQ-QTLS---LLVVDPVLGDLGQLYQGFDQDYVAAXR 129
Query: 144 EKVVPVASMLTPNQFEAEQLTG 165
+ ++ A ++ PN EA LTG
Sbjct: 130 Q-LIQQADVILPNTTEAALLTG 150
>pdb|1RK2|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|B Chain B, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|C Chain C, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|D Chain D, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RKA|A Chain A, The Apo Form Of E. Coli Ribokinase
pdb|1RKS|A Chain A, E. Coli Ribokinase In Complex With D-Ribose
pdb|1GQT|A Chain A, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|B Chain B, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|C Chain C, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|D Chain D, Activation Of Ribokinase By Monovalent Cations
pdb|1RKD|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp
Length = 309
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 34/49 (69%)
Query: 144 EKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVIT 192
++++ + ++TPN+ EAE+LTG R+ ++ D +A ++LH G V+IT
Sbjct: 175 DELLALVDIITPNETEAEKLTGIRVENDEDAAKAAQVLHEKGIRTVLIT 223
>pdb|2FV7|A Chain A, Crystal Structure Of Human Ribokinase
pdb|2FV7|B Chain B, Crystal Structure Of Human Ribokinase
Length = 331
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 132 LYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVI 191
L+ P+ ++ + ++ + N+ EAE LTG +GS AD EA +L G +VVI
Sbjct: 184 LFNPAPAIADLDPQFYTLSDVFCCNESEAEILTGLTVGSAADAGEAALVLLKRG-CQVVI 242
Query: 192 TSINIDGNLFL 202
++ +G + L
Sbjct: 243 ITLGAEGCVVL 253
>pdb|1UB0|A Chain A, Crystal Structure Analysis Of Phosphomethylpyrimidine
Kinase (Thid) From Thermus Thermophilus Hb8
Length = 258
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 121 VCDPVM-GDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACK 179
V DPVM G + E + +E++ P+A ++TPN+ EAE L G I + + EA K
Sbjct: 101 VVDPVMVAKSGDPLLAKEAAAALKERLFPLADLVTPNRLEAEALLGRPIRTLKEAEEAAK 160
Query: 180 ILHAAGPAKVVITSINIDGN 199
L A GP V++ +++G
Sbjct: 161 ALLALGPKAVLLKGGHLEGE 180
>pdb|3RM5|A Chain A, Structure Of Trifunctional Thi20 From Yeast
pdb|3RM5|B Chain B, Structure Of Trifunctional Thi20 From Yeast
Length = 550
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 121 VCDPVM-GDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTG 165
V DPV+ G ++VS+ EKV P A +LTPN E +L G
Sbjct: 123 VVDPVLVATSGSSLAGKDIVSLITEKVAPFADILTPNIPECYKLLG 168
>pdb|3BGK|A Chain A, The Crystal Structure Of Hypothetic Protein Smu.573 From
Streptococcus Mutans
Length = 311
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 152 MLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINID-------GNLFLIG 204
+LTP+Q E E+L+G I + + + H +V S G++ + G
Sbjct: 182 ILTPHQKEWERLSGLTIPEQIEAATQTALAHFPKETILVAKSHQTKIYQGQKIGHIQVGG 241
Query: 205 SHQKEKGTGDLMTALLLGWSNKYR-DNLDIAA 235
+Q G GD + + G+ ++ D ++AA
Sbjct: 242 PYQATGGXGDTLAGXIAGFVAQFHTDRFEVAA 273
>pdb|3RY7|A Chain A, Crystal Sructure Of Sa239
Length = 304
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 20/109 (18%)
Query: 134 VPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITS 193
+P+EL+S+ ++ PN+ EAE L+G ++ +E ++ + G V+IT
Sbjct: 172 LPNELLSLI--------DIIVPNETEAELLSGIKVTNEQSMKDNANYFLSIGIKTVLIT- 222
Query: 194 INIDGNLFLIGSHQKE-----------KGTGDLMTALLLGWSNKYRDNL 231
+ G F + + GD + NK +DNL
Sbjct: 223 LGKQGTYFATKNQSQHIEAYKVNAIDTTAAGDTFIGAFVSRLNKSQDNL 271
>pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From
Bacillus Subtilis
Length = 136
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 64/139 (46%), Gaps = 19/139 (13%)
Query: 151 SMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSI--NIDGNLFLIGSHQK 208
S++T Q+ E+ +G+ + + +DG EA K P +V+ + +DG I ++
Sbjct: 14 SIVTLLQYNLER-SGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDG----IEVCKQ 68
Query: 209 EKGTGDLMTALLLGWSNKYRDNLDIAAELAVSSLQALLQRTVNDYVTAGFDPQSSSLEIR 268
+ + L+L ++ D + + EL +DY+T F P+ + ++
Sbjct: 69 LRQQKLMFPILMLTAKDEEFDKV-LGLELGA-----------DDYMTKPFSPREVNARVK 116
Query: 269 LIQSQDDIRNPQVKFKSEK 287
I + +IR P + K+++
Sbjct: 117 AILRRSEIRAPSSEMKNDE 135
>pdb|1XHE|A Chain A, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
pdb|1XHE|B Chain B, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
Length = 123
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 20/117 (17%)
Query: 158 FEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDG-NLFLIGSHQKEKGTGDLM 216
FEAE G+ + DG E +IL + +VI IN+ G N L+ +E+ LM
Sbjct: 23 FEAE---GYDVFEATDGAEMHQIL-SEYDINLVIMDINLPGKNGLLLARELREQANVALM 78
Query: 217 TALLLGWSNKYRDNLDIAAELAVSSLQALLQRTVNDYVTAGFDPQSSSLEIRLIQSQ 273
L G N+ +D L + + +DY+T F+P+ ++ R + S+
Sbjct: 79 --FLTGRDNE----VDKILGLEIGA---------DDYITKPFNPRELTIRARNLLSR 120
>pdb|1LME|A Chain A, Crystal Structure Of Peptide Deformylase From Thermotoga
Maritima
pdb|1LME|B Chain B, Crystal Structure Of Peptide Deformylase From Thermotoga
Maritima
Length = 176
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 114 INPNLIYVCDPV--MGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFR---I 168
INP ++ + DP + +EG L P V + R K + V T ++ E+L G+
Sbjct: 81 INPEILEI-DPETEVAEEGXLSFPEIFVEIERSKRIKVKYQNTRGEYVEEELEGYAARVF 139
Query: 169 GSEADGREACKILHAAGPAK 188
E D I+ PAK
Sbjct: 140 QHEFDHLNGVLIIDRISPAK 159
>pdb|2JIO|A Chain A, A New Catalytic Mechanism Of Periplasmic Nitrate Reductase
From Desulfovibrio Desulfuricans Atcc 27774 From
Crystallographic And Epr Data And Based On Detailed
Analysis Of The Sixth Ligand
pdb|2JIQ|A Chain A, A New Catalytic Mechanism Of Periplasmic Nitrate Reductase
From Desulfovibrio Desulfuricans Atcc 27774 From
Crystallographic And Epr Data And Based On Detailed
Analysis Of The Sixth Ligand
pdb|2V3V|A Chain A, A New Catalytic Mechanism Of Periplasmic Nitrate Reductase
From Desulfovibrio Desulfuricans Atcc 27774 From
Crystallographic And Epr Data And Based On Detailed
Analysis Of The Sixth Ligand
Length = 723
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Query: 76 IEGLEANNLLYYTHLLTGYI---GSVSF 100
++G+ ANNL++ HL+TG I G+ SF
Sbjct: 314 VQGVFANNLIHNLHLITGQICRPGATSF 341
>pdb|2NAP|A Chain A, Dissimilatory Nitrate Reductase (Nap) From Desulfovibrio
Desulfuricans
pdb|2JIM|A Chain A, A New Catalytic Mechanism Of Periplasmic Nitrate Reductase
From Desulfovibrio Desulfuricans Atcc 27774 From
Crystallographic And Epr Data And Based On Detailed
Analysis Of The Sixth Ligand
pdb|2JIP|A Chain A, A New Catalytic Mechanism Of Periplasmic Nitrate Reductase
From Desulfovibrio Desulfuricans Atcc 27774 From
Crystallographic And Epr Data And Based On Detailed
Analysis Of The Sixth Ligand
pdb|2JIR|A Chain A, A New Catalytic Mechanism Of Periplasmic Nitrate Reductase
From Desulfovibrio Desulfuricans Atcc 27774 From
Crystallographic And Epr Data And Based On Detailed
Analysis Of The Sixth Ligand
pdb|2V45|A Chain A, A New Catalytic Mechanism Of Periplasmic Nitrate Reductase
From Desulfovibrio Desulfuricans Atcc 27774 From
Crystallographic And Epr Data And Based On Detailed
Analysis Of The Sixth Ligand
Length = 723
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Query: 76 IEGLEANNLLYYTHLLTGYI---GSVSF 100
++G+ ANNL++ HL+TG I G+ SF
Sbjct: 314 VQGVFANNLIHNLHLITGQICRPGATSF 341
>pdb|1XJE|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dttp-Gdp Complex
pdb|1XJE|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dttp-Gdp Complex
pdb|1XJN|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Cdp Complex
pdb|1XJN|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Cdp Complex
pdb|1XJN|C Chain C, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Cdp Complex
pdb|1XJN|D Chain D, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Cdp Complex
pdb|1XJF|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp Complex
pdb|1XJF|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp Complex
pdb|1XJG|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Udp Complex
pdb|1XJG|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Udp Complex
pdb|1XJJ|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dgtp Complex
pdb|1XJJ|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dgtp Complex
pdb|1XJM|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dttp Complex
pdb|1XJM|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dttp Complex
pdb|3O0N|A Chain A, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp And Adenosylcobalamin
pdb|3O0N|B Chain B, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp And Adenosylcobalamin
pdb|3O0O|A Chain A, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp, Gdp And Adenosylcobalamin
pdb|3O0O|B Chain B, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp, Gdp And Adenosylcobalamin
pdb|3O0Q|A Chain A, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp, Gdp And Adenosine
pdb|3O0Q|B Chain B, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp, Gdp And Adenosine
Length = 644
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 72 LCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGK 131
+ D GLE N LL YT +T G+ L + QV+ + +NP ++ + + ++G
Sbjct: 497 IADTSSGLEPNFLLAYTRFVTKEDGTKEPLLYVNQVLRE--KLNPEILKRIEKELIEKGS 554
Query: 132 LY----VPSELVSVY 142
L VP ++ V+
Sbjct: 555 LKDIPDVPEKIKKVF 569
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,423,386
Number of Sequences: 62578
Number of extensions: 344401
Number of successful extensions: 923
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 870
Number of HSP's gapped (non-prelim): 30
length of query: 289
length of database: 14,973,337
effective HSP length: 98
effective length of query: 191
effective length of database: 8,840,693
effective search space: 1688572363
effective search space used: 1688572363
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)