Query 022988
Match_columns 289
No_of_seqs 263 out of 1948
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 07:38:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022988.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022988hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02978 pyridoxal kinase 100.0 2E-44 4.4E-49 325.8 31.0 287 1-288 1-307 (308)
2 KOG2599 Pyridoxal/pyridoxine/p 100.0 6.6E-44 1.4E-48 302.8 24.7 282 7-288 2-305 (308)
3 COG2240 PdxK Pyridoxal/pyridox 100.0 2.3E-43 5E-48 306.2 25.9 263 15-288 1-280 (281)
4 PRK05756 pyridoxamine kinase; 100.0 1.3E-41 2.8E-46 305.1 28.6 264 14-288 1-285 (286)
5 PRK08176 pdxK pyridoxal-pyrido 100.0 8.2E-40 1.8E-44 292.5 28.0 247 13-271 14-279 (281)
6 TIGR00687 pyridox_kin pyridoxa 100.0 3.2E-39 6.9E-44 289.6 28.5 262 14-287 1-285 (286)
7 PTZ00344 pyridoxal kinase; Pro 100.0 3.7E-38 8E-43 283.9 28.9 273 11-288 1-296 (296)
8 COG0351 ThiD Hydroxymethylpyri 100.0 2.8E-37 6.1E-42 267.0 26.3 241 13-262 2-259 (263)
9 cd01173 pyridoxal_pyridoxamine 100.0 1.3E-34 2.7E-39 255.4 26.7 234 16-250 1-253 (254)
10 PRK07105 pyridoxamine kinase; 100.0 1.6E-34 3.6E-39 258.8 26.5 235 12-252 2-259 (284)
11 PRK12412 pyridoxal kinase; Rev 100.0 1.9E-33 4.1E-38 249.9 27.5 245 14-267 1-265 (268)
12 PRK12616 pyridoxal kinase; Rev 100.0 2.4E-33 5.2E-38 249.4 27.0 236 14-257 3-258 (270)
13 TIGR00097 HMP-P_kinase phospho 100.0 1.2E-32 2.7E-37 242.9 26.0 226 17-252 1-244 (254)
14 PRK06427 bifunctional hydroxy- 100.0 1.8E-32 3.8E-37 243.4 26.9 234 12-254 2-254 (266)
15 cd01169 HMPP_kinase 4-amino-5- 100.0 1.5E-32 3.2E-37 240.3 25.4 224 16-248 1-241 (242)
16 PF08543 Phos_pyr_kin: Phospho 100.0 4.1E-32 8.8E-37 238.4 22.3 225 24-258 1-244 (246)
17 PTZ00493 phosphomethylpyrimidi 100.0 2.3E-31 4.9E-36 239.0 26.3 239 11-255 1-292 (321)
18 PTZ00347 phosphomethylpyrimidi 100.0 7.7E-31 1.7E-35 252.2 25.5 226 13-251 229-481 (504)
19 PRK08573 phosphomethylpyrimidi 100.0 9.9E-30 2.1E-34 240.9 27.0 236 14-259 2-255 (448)
20 PRK12413 phosphomethylpyrimidi 100.0 2E-29 4.4E-34 222.1 26.2 226 14-252 3-246 (253)
21 PLN02898 HMP-P kinase/thiamin- 100.0 1.1E-29 2.4E-34 244.1 26.3 237 9-255 2-260 (502)
22 PRK14713 multifunctional hydro 100.0 1.6E-29 3.4E-34 244.2 24.2 231 10-250 25-274 (530)
23 PRK09517 multifunctional thiam 100.0 5E-29 1.1E-33 248.9 23.9 232 9-250 236-486 (755)
24 KOG2598 Phosphomethylpyrimidin 100.0 4.2E-29 9.1E-34 224.6 19.2 242 2-252 11-287 (523)
25 COG1105 FruK Fructose-1-phosph 99.9 4.7E-25 1E-29 195.5 21.4 212 17-247 45-285 (310)
26 cd01174 ribokinase Ribokinase 99.9 8.1E-22 1.8E-26 176.7 17.8 199 25-248 55-283 (292)
27 PRK11142 ribokinase; Provision 99.9 7.3E-22 1.6E-26 178.3 17.1 199 25-248 58-286 (306)
28 PTZ00292 ribokinase; Provision 99.9 1E-21 2.2E-26 179.2 17.9 204 26-248 72-307 (326)
29 TIGR03828 pfkB 1-phosphofructo 99.9 3.2E-21 7E-26 173.8 20.7 206 26-249 55-285 (304)
30 cd01166 KdgK 2-keto-3-deoxyglu 99.9 1E-21 2.2E-26 176.1 17.3 206 25-248 50-290 (294)
31 PRK10294 6-phosphofructokinase 99.9 4E-21 8.7E-26 174.0 20.3 197 34-248 69-289 (309)
32 PTZ00247 adenosine kinase; Pro 99.9 1.3E-21 2.8E-26 180.0 16.0 208 25-249 85-332 (345)
33 PRK09513 fruK 1-phosphofructok 99.9 1.1E-20 2.4E-25 171.4 21.5 205 26-248 59-288 (312)
34 PLN02341 pfkB-type carbohydrat 99.9 1.9E-21 4.1E-26 185.5 17.2 151 87-248 225-390 (470)
35 cd01172 RfaE_like RfaE encodes 99.9 5.1E-21 1.1E-25 172.5 17.7 143 87-248 135-291 (304)
36 PRK13508 tagatose-6-phosphate 99.9 1.1E-20 2.4E-25 171.2 19.5 204 26-249 56-287 (309)
37 cd01164 FruK_PfkB_like 1-phosp 99.9 1.6E-20 3.5E-25 168.3 20.1 204 26-247 56-284 (289)
38 PRK09850 pseudouridine kinase; 99.9 1.3E-20 2.8E-25 171.1 18.5 198 25-247 59-288 (313)
39 PLN02543 pfkB-type carbohydrat 99.9 4.4E-21 9.5E-26 182.4 15.9 210 25-251 191-471 (496)
40 TIGR02198 rfaE_dom_I rfaE bifu 99.9 2.3E-20 4.9E-25 169.3 19.8 202 25-248 66-299 (315)
41 PLN02967 kinase 99.9 4.7E-21 1E-25 184.1 15.8 210 25-251 262-529 (581)
42 TIGR01231 lacC tagatose-6-phos 99.9 1.4E-20 3.1E-25 170.4 18.2 148 87-249 127-287 (309)
43 TIGR03168 1-PFK hexose kinase, 99.9 3.2E-20 7E-25 167.5 20.1 204 26-247 55-283 (303)
44 PRK09954 putative kinase; Prov 99.9 1.8E-20 3.9E-25 173.5 18.8 195 25-245 112-339 (362)
45 cd01168 adenosine_kinase Adeno 99.9 6.8E-21 1.5E-25 172.6 14.9 203 25-249 74-307 (312)
46 TIGR02152 D_ribokin_bact ribok 99.9 3.4E-20 7.3E-25 166.4 18.6 200 25-248 50-279 (293)
47 PLN02323 probable fructokinase 99.9 2.3E-20 5E-25 170.6 16.8 207 25-249 62-309 (330)
48 cd01171 YXKO-related B.subtili 99.8 1.5E-19 3.3E-24 159.4 20.8 214 13-251 7-238 (254)
49 PRK09434 aminoimidazole ribosi 99.8 4.9E-20 1.1E-24 166.4 16.4 138 100-249 135-291 (304)
50 cd01167 bac_FRK Fructokinases 99.8 3.1E-20 6.7E-25 166.6 14.2 150 87-248 121-291 (295)
51 PLN02813 pfkB-type carbohydrat 99.8 4.5E-20 9.8E-25 173.8 15.6 205 25-249 153-389 (426)
52 COG0524 RbsK Sugar kinases, ri 99.8 9.2E-20 2E-24 165.1 16.0 201 25-248 56-290 (311)
53 PLN02548 adenosine kinase 99.8 1.5E-19 3.3E-24 165.3 17.4 207 25-249 74-321 (332)
54 cd01944 YegV_kinase_like YegV- 99.8 9.1E-20 2E-24 163.4 14.6 200 25-248 54-287 (289)
55 PRK15074 inosine/guanosine kin 99.8 1.2E-19 2.5E-24 170.5 15.5 203 24-249 111-412 (434)
56 cd01941 YeiC_kinase_like YeiC- 99.8 8.2E-19 1.8E-23 156.9 17.7 198 25-247 54-287 (288)
57 PF00294 PfkB: pfkB family car 99.8 1.2E-19 2.5E-24 163.0 12.3 206 25-248 55-291 (301)
58 PLN02379 pfkB-type carbohydrat 99.8 1.1E-18 2.3E-23 161.8 16.6 201 25-249 106-339 (367)
59 PRK11316 bifunctional heptose 99.8 2.4E-18 5.3E-23 164.7 19.5 128 101-248 157-297 (473)
60 cd01943 MAK32 MAK32 kinase. M 99.8 2.1E-18 4.5E-23 157.7 17.2 139 101-249 134-302 (328)
61 cd01940 Fructoselysine_kinase_ 99.8 1.6E-18 3.5E-23 153.3 15.7 191 25-248 41-260 (264)
62 cd01945 ribokinase_group_B Rib 99.8 4.9E-18 1.1E-22 151.6 15.9 191 25-248 55-275 (284)
63 TIGR00196 yjeF_cterm yjeF C-te 99.8 1.8E-17 3.8E-22 147.7 18.2 206 13-241 23-240 (272)
64 cd01946 ribokinase_group_C Rib 99.8 1.1E-17 2.4E-22 149.1 16.6 198 24-248 42-272 (277)
65 KOG2855 Ribokinase [Carbohydra 99.8 6E-18 1.3E-22 150.5 12.5 201 24-245 64-304 (330)
66 cd01942 ribokinase_group_A Rib 99.7 3.9E-17 8.5E-22 145.3 14.6 124 103-248 137-275 (279)
67 cd01939 Ketohexokinase Ketohex 99.7 1.1E-16 2.4E-21 143.6 14.8 194 25-248 55-286 (290)
68 PRK09813 fructoselysine 6-kina 99.7 2.9E-16 6.4E-21 138.7 17.3 183 25-248 42-256 (260)
69 cd01947 Guanosine_kinase_like 99.7 5E-17 1.1E-21 143.9 11.4 117 105-248 134-261 (265)
70 TIGR00694 thiM hydroxyethylthi 99.7 1.1E-15 2.3E-20 134.5 17.2 155 87-252 52-225 (249)
71 cd00287 ribokinase_pfkB_like r 99.7 6.8E-16 1.5E-20 130.0 15.2 115 101-225 70-196 (196)
72 cd01170 THZ_kinase 4-methyl-5- 99.7 5E-15 1.1E-19 129.6 20.0 150 90-251 55-225 (242)
73 cd01937 ribokinase_group_D Rib 99.6 3.3E-15 7.2E-20 131.4 13.5 136 86-246 107-253 (254)
74 COG2870 RfaE ADP-heptose synth 99.6 1.4E-14 2.9E-19 130.8 15.9 123 104-246 160-294 (467)
75 KOG2854 Possible pfkB family c 99.6 4.3E-15 9.4E-20 131.1 12.4 209 24-249 84-332 (343)
76 PRK09355 hydroxyethylthiazole 99.6 2.9E-13 6.3E-18 120.0 19.7 154 89-251 59-229 (263)
77 PLN02630 pfkB-type carbohydrat 99.5 6.6E-14 1.4E-18 128.1 13.0 127 99-248 132-274 (335)
78 PRK10565 putative carbohydrate 99.3 1.9E-10 4.2E-15 110.7 20.6 201 13-241 253-468 (508)
79 PF01256 Carb_kinase: Carbohyd 99.2 2.6E-10 5.7E-15 99.6 12.0 200 17-241 1-215 (242)
80 COG2145 ThiM Hydroxyethylthiaz 99.0 4.6E-08 1E-12 84.5 17.5 154 89-252 60-232 (265)
81 PF02110 HK: Hydroxyethylthiaz 99.0 3.3E-08 7.1E-13 86.1 15.4 152 90-251 55-224 (246)
82 COG0063 Predicted sugar kinase 98.8 1.8E-07 3.8E-12 83.4 16.1 192 12-228 30-239 (284)
83 KOG2947 Carbohydrate kinase [C 98.8 6.7E-08 1.5E-12 82.3 11.2 182 34-242 73-289 (308)
84 KOG3974 Predicted sugar kinase 98.7 7.9E-07 1.7E-11 76.6 15.4 227 3-251 19-270 (306)
85 KOG3009 Predicted carbohydrate 98.1 3.5E-05 7.6E-10 71.4 12.3 195 25-246 375-598 (614)
86 PRK14039 ADP-dependent glucoki 92.4 2.4 5.1E-05 40.5 12.0 85 103-193 238-331 (453)
87 PRK14038 ADP-dependent glucoki 91.1 7.9 0.00017 37.0 13.8 113 70-193 212-342 (453)
88 PRK03979 ADP-specific phosphof 90.4 6 0.00013 37.9 12.5 114 70-193 210-346 (463)
89 TIGR02045 P_fruct_ADP ADP-spec 86.7 14 0.00031 35.3 12.2 113 70-193 197-332 (446)
90 PRK10076 pyruvate formate lyas 86.6 20 0.00042 30.7 12.8 108 63-188 15-130 (213)
91 COG0541 Ffh Signal recognition 78.8 49 0.0011 31.5 12.3 148 12-193 97-248 (451)
92 COG1058 CinA Predicted nucleot 67.8 16 0.00034 32.3 6.0 86 17-125 6-95 (255)
93 PF04587 ADP_PFK_GK: ADP-speci 66.0 28 0.00061 33.3 7.8 112 70-192 197-333 (444)
94 PLN02891 IMP cyclohydrolase 65.5 30 0.00066 33.7 7.8 114 9-125 16-168 (547)
95 TIGR02026 BchE magnesium-proto 63.2 83 0.0018 30.5 10.6 97 36-161 30-127 (497)
96 PRK05301 pyrroloquinoline quin 58.8 1.5E+02 0.0033 27.4 12.9 112 66-189 45-158 (378)
97 TIGR03278 methan_mark_10 putat 58.7 1.7E+02 0.0036 27.8 12.2 111 63-183 50-165 (404)
98 PF02310 B12-binding: B12 bind 57.2 79 0.0017 23.6 9.4 73 29-123 15-87 (121)
99 TIGR00334 5S_RNA_mat_M5 ribonu 53.0 1.1E+02 0.0024 25.4 8.1 73 100-182 34-109 (174)
100 COG4381 Mu-like prophage prote 52.3 22 0.00048 27.5 3.6 54 213-267 50-112 (135)
101 PF00215 OMPdecase: Orotidine 50.6 1.1E+02 0.0025 26.0 8.4 103 68-192 11-119 (226)
102 PRK13397 3-deoxy-7-phosphohept 47.8 2E+02 0.0043 25.4 10.8 78 101-193 65-157 (250)
103 cd04725 OMP_decarboxylase_like 47.7 1.6E+02 0.0035 25.0 8.8 60 87-157 24-84 (216)
104 TIGR02109 PQQ_syn_pqqE coenzym 47.2 2.3E+02 0.0049 25.9 11.7 112 65-188 35-148 (358)
105 KOG1615 Phosphoserine phosphat 47.2 15 0.00032 31.1 2.1 48 148-195 66-114 (227)
106 TIGR02351 thiH thiazole biosyn 45.9 2.5E+02 0.0054 26.0 11.7 113 65-187 101-216 (366)
107 PRK08508 biotin synthase; Prov 45.9 2.2E+02 0.0047 25.3 12.3 110 67-186 40-151 (279)
108 COG0552 FtsY Signal recognitio 45.5 2.5E+02 0.0054 25.9 10.5 154 12-193 136-293 (340)
109 TIGR03586 PseI pseudaminic aci 45.5 1.2E+02 0.0027 27.7 8.1 79 101-193 76-168 (327)
110 COG2099 CobK Precorrin-6x redu 44.4 44 0.00094 29.5 4.7 25 170-195 113-137 (257)
111 cd02070 corrinoid_protein_B12- 42.4 2E+02 0.0044 24.0 8.9 94 36-164 104-199 (201)
112 PF03102 NeuB: NeuB family; I 42.0 1.4E+02 0.0031 26.0 7.7 79 101-193 55-147 (241)
113 cd02067 B12-binding B12 bindin 38.7 1.2E+02 0.0025 22.8 6.0 71 30-122 15-86 (119)
114 PRK15447 putative protease; Pr 37.9 3E+02 0.0066 24.7 10.0 115 67-193 12-139 (301)
115 PF11469 Ribonucleas_3_2: Ribo 37.8 41 0.0009 25.3 3.0 31 206-237 52-83 (120)
116 PF02571 CbiJ: Precorrin-6x re 37.7 46 0.001 29.2 3.9 25 171-195 115-139 (249)
117 COG0075 Serine-pyruvate aminot 37.5 1.5E+02 0.0033 27.9 7.5 91 13-127 79-171 (383)
118 KOG0174 20S proteasome, regula 37.3 17 0.00037 30.5 1.1 40 208-252 145-185 (224)
119 COG1313 PflX Uncharacterized F 37.2 1.6E+02 0.0034 26.7 7.1 88 64-167 146-238 (335)
120 PF12770 CHAT: CHAT domain 36.8 1.3E+02 0.0028 26.2 6.8 57 172-241 209-265 (287)
121 TIGR01361 DAHP_synth_Bsub phos 35.4 1.9E+02 0.0041 25.5 7.5 77 102-193 76-167 (260)
122 COG1830 FbaB DhnA-type fructos 35.4 2.8E+02 0.006 24.7 8.3 89 90-195 118-211 (265)
123 COG1509 KamA Lysine 2,3-aminom 35.0 3.4E+02 0.0074 25.3 9.1 109 67-193 141-261 (369)
124 PRK00881 purH bifunctional pho 34.7 2E+02 0.0043 28.2 7.9 50 76-125 86-150 (513)
125 COG1180 PflA Pyruvate-formate 33.9 3.3E+02 0.0071 23.9 12.5 75 99-188 96-175 (260)
126 COG3107 LppC Putative lipoprot 33.5 1.1E+02 0.0024 30.0 5.9 81 102-193 306-390 (604)
127 cd01938 ADPGK_ADPPFK ADP-depen 32.7 2.8E+02 0.006 26.7 8.5 31 134-164 255-285 (445)
128 PRK00964 tetrahydromethanopter 32.6 3.3E+02 0.0071 23.5 8.1 89 12-117 69-157 (225)
129 KOG4184 Predicted sugar kinase 32.4 1.7E+02 0.0036 27.3 6.6 102 73-183 228-348 (478)
130 TIGR03569 NeuB_NnaB N-acetylne 31.8 3.3E+02 0.0071 25.0 8.6 73 101-187 75-161 (329)
131 PRK05198 2-dehydro-3-deoxyphos 31.3 3.8E+02 0.0082 23.8 8.6 77 104-194 69-160 (264)
132 COG1703 ArgK Putative periplas 31.1 4E+02 0.0086 24.4 8.7 125 10-159 46-200 (323)
133 PLN00124 succinyl-CoA ligase [ 30.7 4.2E+02 0.009 25.3 9.4 54 67-122 328-382 (422)
134 TIGR02370 pyl_corrinoid methyl 30.6 3.2E+02 0.0069 22.8 9.2 72 29-122 99-172 (197)
135 PRK04165 acetyl-CoA decarbonyl 30.5 5E+02 0.011 25.0 12.2 56 66-124 101-162 (450)
136 COG3589 Uncharacterized conser 30.5 2.5E+02 0.0055 25.9 7.4 39 87-127 30-72 (360)
137 COG1121 ZnuC ABC-type Mn/Zn tr 30.3 66 0.0014 28.4 3.7 49 141-193 149-197 (254)
138 TIGR00355 purH phosphoribosyla 30.2 2.3E+02 0.005 27.7 7.5 50 76-125 81-145 (511)
139 PLN03033 2-dehydro-3-deoxyphos 30.0 3.1E+02 0.0067 24.7 7.7 79 102-194 73-166 (290)
140 cd02069 methionine_synthase_B1 30.0 3.5E+02 0.0075 23.0 9.5 99 37-164 111-209 (213)
141 PF13986 DUF4224: Domain of un 29.2 1E+02 0.0022 19.5 3.5 31 155-190 3-33 (47)
142 TIGR02045 P_fruct_ADP ADP-spec 28.7 26 0.00057 33.5 1.0 22 204-225 419-441 (446)
143 TIGR02491 NrdG anaerobic ribon 28.5 2.4E+02 0.0052 22.4 6.5 58 64-124 43-102 (154)
144 COG0269 SgbH 3-hexulose-6-phos 28.5 1.9E+02 0.0042 24.8 6.0 98 87-195 29-140 (217)
145 PRK12595 bifunctional 3-deoxy- 28.4 2.3E+02 0.0049 26.4 7.1 78 101-193 168-260 (360)
146 PRK13396 3-deoxy-7-phosphohept 28.4 4.9E+02 0.011 24.2 10.8 78 103-194 152-244 (352)
147 PRK03659 glutathione-regulated 28.0 4.5E+02 0.0098 26.2 9.6 116 26-165 408-527 (601)
148 cd04890 ACT_AK-like_1 ACT doma 27.2 97 0.0021 20.1 3.4 34 17-50 2-36 (62)
149 smart00642 Aamy Alpha-amylase 27.1 67 0.0015 26.2 3.0 25 101-127 69-93 (166)
150 PF03932 CutC: CutC family; I 26.7 1E+02 0.0023 26.1 4.1 56 67-126 66-123 (201)
151 cd02071 MM_CoA_mut_B12_BD meth 26.5 2.9E+02 0.0062 20.9 6.4 57 36-114 21-77 (122)
152 PF10686 DUF2493: Protein of u 26.4 1.3E+02 0.0029 20.8 4.0 31 168-198 14-44 (71)
153 TIGR00444 mazG MazG family pro 26.4 2.2E+02 0.0049 25.0 6.3 47 211-258 184-230 (248)
154 PRK13762 tRNA-modifying enzyme 25.4 5.2E+02 0.011 23.5 11.5 78 102-189 145-225 (322)
155 TIGR01362 KDO8P_synth 3-deoxy- 25.2 4.8E+02 0.01 23.1 8.5 78 103-194 60-152 (258)
156 PRK11572 copper homeostasis pr 25.1 1.5E+02 0.0032 26.1 4.9 55 66-124 66-122 (248)
157 PRK03673 hypothetical protein; 25.1 1.7E+02 0.0037 27.6 5.7 35 17-51 6-43 (396)
158 PRK03979 ADP-specific phosphof 24.9 34 0.00073 32.9 0.9 22 204-225 433-455 (463)
159 PF11965 DUF3479: Domain of un 24.7 2.8E+02 0.006 22.8 6.1 42 68-114 44-85 (164)
160 TIGR01358 DAHP_synth_II 3-deox 24.6 2.8E+02 0.0061 26.5 6.8 61 64-125 287-347 (443)
161 TIGR01111 mtrA N5-methyltetrah 24.3 4.7E+02 0.01 22.7 8.5 89 12-117 69-157 (238)
162 COG1099 Predicted metal-depend 24.2 4.8E+02 0.01 22.8 11.7 123 66-194 76-211 (254)
163 TIGR01769 GGGP geranylgeranylg 24.2 3.4E+02 0.0073 23.1 6.8 49 70-124 11-60 (205)
164 cd06533 Glyco_transf_WecG_TagA 24.0 3.9E+02 0.0085 21.6 10.9 100 69-195 32-133 (171)
165 cd00958 DhnA Class I fructose- 24.0 4.5E+02 0.0097 22.3 9.9 27 98-126 105-131 (235)
166 PRK13398 3-deoxy-7-phosphohept 23.9 5.1E+02 0.011 22.9 11.4 107 69-193 40-169 (266)
167 PF00128 Alpha-amylase: Alpha 23.8 87 0.0019 27.3 3.4 25 101-127 51-75 (316)
168 PRK13305 sgbH 3-keto-L-gulonat 23.7 2.1E+02 0.0045 24.6 5.5 52 70-128 16-67 (218)
169 TIGR01768 GGGP-family geranylg 23.7 2.3E+02 0.005 24.5 5.8 44 75-124 19-62 (223)
170 cd01421 IMPCH Inosine monophos 23.4 3.1E+02 0.0067 23.0 6.3 46 79-124 84-144 (187)
171 COG0194 Gmk Guanylate kinase [ 23.0 4.6E+02 0.01 22.1 13.9 131 14-174 3-143 (191)
172 PLN02291 phospho-2-dehydro-3-d 22.7 3.1E+02 0.0066 26.5 6.7 61 64-125 307-367 (474)
173 COG2089 SpsE Sialic acid synth 22.6 5.8E+02 0.013 23.5 8.2 26 169-194 157-183 (347)
174 cd02068 radical_SAM_B12_BD B12 22.1 3.5E+02 0.0075 20.4 6.1 47 103-159 54-100 (127)
175 COG1646 Predicted phosphate-bi 21.9 2.7E+02 0.0059 24.3 5.8 37 87-125 42-78 (240)
176 TIGR03849 arch_ComA phosphosul 21.8 5.4E+02 0.012 22.4 9.0 25 171-195 133-157 (237)
177 TIGR03282 methan_mark_13 putat 21.6 6.4E+02 0.014 23.4 8.3 62 15-81 76-150 (352)
178 PF05762 VWA_CoxE: VWA domain 21.3 5.1E+02 0.011 21.9 7.8 81 71-155 135-215 (222)
179 PF09673 TrbC_Ftype: Type-F co 21.2 3.7E+02 0.008 20.3 6.3 58 66-127 7-64 (113)
180 COG0269 SgbH 3-hexulose-6-phos 20.3 5E+02 0.011 22.4 7.0 83 100-195 91-173 (217)
181 PRK14738 gmk guanylate kinase; 20.1 5.1E+02 0.011 21.5 12.5 39 1-44 1-39 (206)
182 PRK03562 glutathione-regulated 20.1 6E+02 0.013 25.5 8.8 116 26-165 408-527 (621)
No 1
>PLN02978 pyridoxal kinase
Probab=100.00 E-value=2e-44 Score=325.78 Aligned_cols=287 Identities=80% Similarity=1.219 Sum_probs=253.7
Q ss_pred CCCCeeeccCCCCCCeEEEEeccCccCccchhhcHHHHHhCCCcceeeceEEeecCCCCCCcceeeCCHHHHHHHHHHHH
Q 022988 1 MAPPILSLALPSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLE 80 (289)
Q Consensus 1 ~~~~~~~~~~~~~~~~vl~i~g~~~~G~vG~~~~~~~l~~~Gv~~~~v~~~~~~~~tg~~~i~g~~l~~~~~~~~~~~l~ 80 (289)
|+||+|++..+.++++||+|++++.+|.+|+.+...+|+.+|++++.++|+.+|+||||..+.|..++++++..++++|.
T Consensus 1 ~~~~~~~~~~~~~~~~vl~iqs~~~~g~~g~~~a~~pl~~~g~~v~~lpTv~lSnhtgy~~~~~~~~~~~~~~~~l~~~~ 80 (308)
T PLN02978 1 MAPPVLSLALPSSTGRVLSIQSHTVHGYVGNKSAVFPLQLLGFDVDPINSVQFSNHTGYPTFKGQVLDGEQLWALIEGLE 80 (308)
T ss_pred CCcchhccccCCCCCcEEEEeCeeeecCCCceehHhhHHHcCCeeeeeccEeecCCCCCCCceeeeCCHHHHHHHHHHHH
Confidence 78999999999999999999999999999997777779999999999999999999999988899999889999999999
Q ss_pred hCCCcccCEEEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHH
Q 022988 81 ANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEA 160 (289)
Q Consensus 81 ~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~ 160 (289)
..+.+.++++++|++++....+.+.++++.+++.++++++|+||+|+++|++|.+++..+.+++.+++++|+++||++|+
T Consensus 81 ~~~~~~~~ai~~G~l~s~~~~~~v~~~l~~~~~~~~~~~vvlDPvm~d~G~l~~~~~~~~~~~~~ll~~adiitPN~~Ea 160 (308)
T PLN02978 81 ANGLLFYTHLLTGYIGSVSFLRTVLRVVKKLRSVNPNLTYVCDPVLGDEGKLYVPPELVPVYREKVVPLATMLTPNQFEA 160 (308)
T ss_pred HcCCcccCEEEecccCCHHHHHHHHHHHHHHHHhCCCCeEEECCcccCCCCccCChhHHHHHHHHHHhhCCeeccCHHHH
Confidence 87776799999999999999999999999998755578899999999988888888888888766999999999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHhcCCCeEEEeeeecCCcEEEe----------cc---------cCCCCCchHHHHHHHH
Q 022988 161 EQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLI----------GS---------HQKEKGTGDLMTALLL 221 (289)
Q Consensus 161 ~~L~g~~~~~~~~~~~a~~~L~~~g~~~Vvvt~g~~~G~~~~~----------~~---------~~dt~GAGD~f~g~l~ 221 (289)
+.|+|.++.+.+++.++++.++++|++.|+||+++.+|.++.. +. +...+|+||+|+|+++
T Consensus 161 ~~L~g~~~~~~~~~~~a~~~l~~~g~~~VVITs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~GtGD~fsA~la 240 (308)
T PLN02978 161 EQLTGIRIVTEEDAREACAILHAAGPSKVVITSIDIDGKLLLVGSHRKEKGARPEQFKIVIPKIPAYFTGTGDLMAALLL 240 (308)
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHhCCCEEEEEEecCCCCEEEEEecccccCCCCceEEEEccCCCCCCCCchHHHHHHHH
Confidence 9999988777778889999999999999999997644443211 01 1345899999999999
Q ss_pred HHHccCC-CCHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccccccccccccccCCccceeeeec
Q 022988 222 GWSNKYR-DNLDIAAELAVSSLQALLQRTVNDYVTAGFDPQSSSLEIRLIQSQDDIRNPQVKFKSEKY 288 (289)
Q Consensus 222 ~~l~~~g-~~~~~A~~~A~a~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (289)
+.+.+ | .++++|+++|.++.+.+++.+.+.....+.+...++.||+++++++.+..|.+.|+++|+
T Consensus 241 a~l~~-g~~~l~~A~~~A~~~v~~~i~~t~~~~~~~~~~~~~~~~el~l~~~~~~~~~~~~~~~~~~~ 307 (308)
T PLN02978 241 GWSHK-YPDNLDKAAELAVSSLQAVLRRTLADYKRAGADPKSSSLELRLVQSQDDIRHPQVRFKAERY 307 (308)
T ss_pred HHHhc-CCcCHHHHHHHHHHHHHHHHHHHHHhccccccCCCccchhhhhccChHhHhCCCceEEEEEc
Confidence 99997 8 799999999999999999999886544444566778999999999999999999999986
No 2
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=100.00 E-value=6.6e-44 Score=302.83 Aligned_cols=282 Identities=54% Similarity=0.841 Sum_probs=252.0
Q ss_pred eccCCCCCCeEEEEeccCccCccchhhcHHHHHhCCCcceeeceEEeecCCCCCCcceeeCCHHHHHHHHHHHHhCCCcc
Q 022988 7 SLALPSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLY 86 (289)
Q Consensus 7 ~~~~~~~~~~vl~i~g~~~~G~vG~~~~~~~l~~~Gv~~~~v~~~~~~~~tg~~~i~g~~l~~~~~~~~~~~l~~~~~~~ 86 (289)
..+.+.+++|||+|++|+..|+|||.++..+|+-.|.|+++++++++|||+||..+.|..++++++..+++.+..++...
T Consensus 2 ~~~~~~~~kRVLSIQShVvhGYVGNkaAtFPLQllGwdVD~insVqFSNHtGY~~~kG~~~~~~eL~dL~egl~~nn~~~ 81 (308)
T KOG2599|consen 2 AEATMETTKRVLSIQSHVVHGYVGNKAATFPLQLLGWDVDVINSVQFSNHTGYAHVKGQVLNEEELEDLYEGLLLNNLNK 81 (308)
T ss_pred CcccccCCccEEEEeeeeeeeeccccccccchhhhccccccccceeeccccCCccccccccCHHHHHHHHHHHhhccccc
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999998877667
Q ss_pred cCEEEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhCC
Q 022988 87 YTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGF 166 (289)
Q Consensus 87 ~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g~ 166 (289)
++++++|++++....+.+.++++++|+.+|+..+++||+|+|+|++|++++.+..+++.+.+.+|+||||+.|++.|+|.
T Consensus 82 Y~~vLTGY~~n~~~l~~i~~iv~~lk~~np~~~wv~DPVmGDnG~lYV~eelipvYr~~i~~ladiiTPNqFE~EiLtg~ 161 (308)
T KOG2599|consen 82 YDAVLTGYLPNVSFLQKIADIVKKLKKKNPNLTWVCDPVMGDNGRLYVPEELIPVYRDLIIPLADIITPNQFEAEILTGM 161 (308)
T ss_pred cceeeeeccCChhHHHHHHHHHHHHHhcCCCeEEEeCccccCCccEeccHHHHHHHHHhhcchhhhcCCcchhhhhhcCC
Confidence 89999999999999999999999999999999999999999999999999999999997778899999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEeeeec---CC-cEEEecc-----------c-CC--CCCchHHHHHHHHHHHccCC
Q 022988 167 RIGSEADGREACKILHAAGPAKVVITSINI---DG-NLFLIGS-----------H-QK--EKGTGDLMTALLLGWSNKYR 228 (289)
Q Consensus 167 ~~~~~~~~~~a~~~L~~~g~~~Vvvt~g~~---~G-~~~~~~~-----------~-~d--t~GAGD~f~g~l~~~l~~~g 228 (289)
++++.+++.++++.|+++|++.||||.... .| .+++.+. + .+ -+|+||.|+|.+++.+.+.-
T Consensus 162 ~I~t~eda~~a~~~lhq~~v~~vVITS~~~~~~~g~~l~c~gs~~~~~~f~~~ipki~~~FtGTGDLfsaLLla~~~~~~ 241 (308)
T KOG2599|consen 162 EIRTEEDAKRAVEKLHQKGVKTVVITSFDLGEFTGETLRCIGSSCGSERFRYLIPKIDGVFTGTGDLFSALLLAWLHESP 241 (308)
T ss_pred eeccHHHHHHHHHHHHHhCCCEEEEEeeeeCCCCCcEEEEEEeccCCceEEEEecccceEEecccHHHHHHHHHHHhcCC
Confidence 999999999999999999999999998643 24 2333321 1 23 47999999999999887622
Q ss_pred --CCHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCc--cccccccccccccCCccceeeeec
Q 022988 229 --DNLDIAAELAVSSLQALLQRTVNDYVTAGFDPQSSS--LEIRLIQSQDDIRNPQVKFKSEKY 288 (289)
Q Consensus 229 --~~~~~A~~~A~a~a~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 288 (289)
.++..|+..+....+..++.|.......|..|.... .|||+|++|+.+.+|++-+.++.|
T Consensus 242 ~~~~l~~a~e~~ls~~~~viqkT~~~~~~~~~~~~~~~~~~ELrLIqSr~~i~~p~~~~~~~~~ 305 (308)
T KOG2599|consen 242 DNDDLSKAVEQVLSSVQAVIQKTLDYAKAQGGEPVKAAMERELRLIQSRDDIEQPSICDQAEVY 305 (308)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhcchhhhhCCccccceEEE
Confidence 679999999999999999999987766665554444 899999999999999999999876
No 3
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=100.00 E-value=2.3e-43 Score=306.22 Aligned_cols=263 Identities=43% Similarity=0.680 Sum_probs=240.7
Q ss_pred CeEEEEeccCccCccchhhcHHHHHhCCCcceeeceEEeecCCCCCCcceeeCCHHHHHHHHHHHHhCCCc-ccCEEEEe
Q 022988 15 GRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLL-YYTHLLTG 93 (289)
Q Consensus 15 ~~vl~i~g~~~~G~vG~~~~~~~l~~~Gv~~~~v~~~~~~~~tg~~~i~g~~l~~~~~~~~~~~l~~~~~~-~~~~v~~G 93 (289)
++||+|++++.+|+|||.+++..|+.+|++++.++|+.+|+||||..+.|...+++++..+++.|.+.+++ ++|+|++|
T Consensus 1 k~vlaIqShVv~G~vGn~AA~f~lq~~G~~V~~vpTV~fSnHtgyg~~~g~v~~~e~l~~~l~~l~~~~~~~~~davltG 80 (281)
T COG2240 1 KRILAIQSHVVYGSVGNSAAIFPLQRLGLDVWAVPTVQFSNHTGYGKWTGIVMPPEQLADLLNGLEAIDKLGECDAVLTG 80 (281)
T ss_pred CcEEEEeeeEeecccccHhHHHHHHHcCCceeeeceEEecCCCCCCCCCCcCCCHHHHHHHHHHHHhcccccccCEEEEc
Confidence 58999999999999999999999999999999999999999999998888899999999999999986554 49999999
Q ss_pred ecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhCCCCCCHHH
Q 022988 94 YIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEAD 173 (289)
Q Consensus 94 ~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g~~~~~~~~ 173 (289)
|+++..+.+.+.++++..|+.+|++.+++||+|++.|++|+.++..+.++.+++|.+|++|||..|++.|+|.++++.++
T Consensus 81 Ylgs~~qv~~i~~~v~~vk~~~P~~~~l~DPVMGD~gglYV~~~~~~~~~~~lip~AdiiTPN~fELe~Ltg~~~~~~~d 160 (281)
T COG2240 81 YLGSAEQVRAIAGIVKAVKEANPNALYLCDPVMGDPGGLYVAPEVAEAYRDELLPLADIITPNIFELEILTGKPLNTLDD 160 (281)
T ss_pred cCCCHHHHHHHHHHHHHHhccCCCeEEEeCCcccCCCceeeccchHHHHHHhhcchhhEeCCCHHHHHHHhCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999779999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEeeeecC----CcEEEecc------------cCCCCCchHHHHHHHHHHHccCCCCHHHHHHH
Q 022988 174 GREACKILHAAGPAKVVITSINID----GNLFLIGS------------HQKEKGTGDLMTALLLGWSNKYRDNLDIAAEL 237 (289)
Q Consensus 174 ~~~a~~~L~~~g~~~Vvvt~g~~~----G~~~~~~~------------~~dt~GAGD~f~g~l~~~l~~~g~~~~~A~~~ 237 (289)
+.++++.|.+.|++.|+||.-... |.++.... +....|+||.|+|.|++.+.+ |.++.+|+.+
T Consensus 161 a~~aa~~L~~~gp~~vlVTS~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~GtGDL~sallla~lL~-g~~~~~al~~ 239 (281)
T COG2240 161 AVKAARKLGADGPKIVLVTSLSRAGMSTGNFEMLGKSAELAWHISPLVPFIPNGTGDLFSALLLARLLE-GLSLTQALER 239 (281)
T ss_pred HHHHHHHHhhcCCCEEEEecccccCCCCceEEEeccchhhhhhhhhcCCCCCCCchHHHHHHHHHHHHc-CCCHHHHHHH
Confidence 999999999999999999986531 33333321 245789999999999999998 9999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCCccccccccccccccCCccceeeeec
Q 022988 238 AVSSLQALLQRTVNDYVTAGFDPQSSSLEIRLIQSQDDIRNPQVKFKSEKY 288 (289)
Q Consensus 238 A~a~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (289)
+.+++.++++.|++. .+.|+++++++.++.+|...|+++|+
T Consensus 240 ~~~~V~evl~~T~~~----------~~~El~lv~~~~~l~~p~~~~~~~~l 280 (281)
T COG2240 240 ATAAVYEVLQETQKL----------GSDELQLVAAQERLAQPFAIFEAERL 280 (281)
T ss_pred HHHHHHHHHHHHHHc----------CCcchhhhhhHHHHhCcHHhhhhhcc
Confidence 999999999999984 47899999999999999999999875
No 4
>PRK05756 pyridoxamine kinase; Validated
Probab=100.00 E-value=1.3e-41 Score=305.11 Aligned_cols=264 Identities=36% Similarity=0.608 Sum_probs=232.7
Q ss_pred CCeEEEEeccCccCccchhhcHHHHHhCCCcceeeceEEeecCCCCCCcceeeCCHHHHHHHHHHHHhCCCc-ccCEEEE
Q 022988 14 TGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLL-YYTHLLT 92 (289)
Q Consensus 14 ~~~vl~i~g~~~~G~vG~~~~~~~l~~~Gv~~~~v~~~~~~~~tg~~~i~g~~l~~~~~~~~~~~l~~~~~~-~~~~v~~ 92 (289)
|++||+|+|++++|++|+.+++.+|+.+|+++..++|+.+++||++..+.|..+++++++.+++.+...+++ .++++++
T Consensus 1 ~~~il~i~~~~~~G~~g~~~~~~~l~~~g~~~~~~~T~~~s~~t~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 80 (286)
T PRK05756 1 MKNILSIQSHVVYGHVGNSAAVFPMQRLGVNVWPLNTVQFSNHTGYGKWTGCVMPPSHLTEIVQGIADIGWLGECDAVLS 80 (286)
T ss_pred CCcEEEEeceeecccccchhHHHHHHHcCCcceeeceEeecCCCCCCCccCeeCCHHHHHHHHHHHHhcCccccCCEEEE
Confidence 679999999999999999999999999999999999999899999877788899999999999999775433 4889999
Q ss_pred eecCCHhHHHHHHHHHHHHHhcCCCceEEEcccccc-CCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhCCCCCCH
Q 022988 93 GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD-EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSE 171 (289)
Q Consensus 93 G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~-~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g~~~~~~ 171 (289)
|++++....+.+.++++++|+..+.+.+++||++++ .+..|.+++..+.+++.+++++|+++||+.|++.|+|.+..+.
T Consensus 81 G~l~~~~~~~~v~~~i~~~k~~~~~~~~v~DPv~~d~~~~~~~~~~~~~~~~~~ll~~adiitpN~~Ea~~L~g~~~~~~ 160 (286)
T PRK05756 81 GYLGSAEQGEAILDAVRRVKAANPQALYFCDPVMGDPEKGCIVAPGVAEFLRDRALPAADIITPNLFELEWLSGRPVETL 160 (286)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCCCEEECccHhHHHHHhhcccccEecCCHHHHHHHhCCCcCCH
Confidence 999999999999999999987644577999999998 4447778888888887799999999999999999999887778
Q ss_pred HHHHHHHHHHHhcCCCeEEEeeeecC-------CcEEEecc----------cC--CCCCchHHHHHHHHHHHccCCCCHH
Q 022988 172 ADGREACKILHAAGPAKVVITSINID-------GNLFLIGS----------HQ--KEKGTGDLMTALLLGWSNKYRDNLD 232 (289)
Q Consensus 172 ~~~~~a~~~L~~~g~~~Vvvt~g~~~-------G~~~~~~~----------~~--dt~GAGD~f~g~l~~~l~~~g~~~~ 232 (289)
+++.++++.|+++|++.|+||+|+.. |.+++.++ .. +++||||+|+|+|+++|++ |++++
T Consensus 161 ~~~~~~~~~l~~~g~~~Vvvt~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~GaGD~f~a~~~a~l~~-g~~~~ 239 (286)
T PRK05756 161 EDAVAAARALIARGPKIVLVTSLARAGYPADRFEMLLVTADGAWHISRPLVDFMRQPVGVGDLTSALFLARLLQ-GGSLE 239 (286)
T ss_pred HHHHHHHHHHHHhCCCEEEEeccccCCCCCCcEEEEEEECCceEEEecCccCCCCCCCChHHHHHHHHHHHHhc-CCCHH
Confidence 88889999999999999999998621 34443321 13 8899999999999999998 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccccccccccccccCCccceeeeec
Q 022988 233 IAAELAVSSLQALLQRTVNDYVTAGFDPQSSSLEIRLIQSQDDIRNPQVKFKSEKY 288 (289)
Q Consensus 233 ~A~~~A~a~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (289)
+|+++|+++++.+++.+.++ ++.||+++++++.+.+|...|.++|.
T Consensus 240 ~al~~A~~~~~~~i~~~~~~----------~~~el~~~~~~~~~~~~~~~~~~~~~ 285 (286)
T PRK05756 240 EALEHTTAAVYEVMARTKER----------GSYELQLVAAQDSIATPRAMFQARRL 285 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHc----------CCCccceecChHHHhCCCcceeeEEC
Confidence 99999999999999999773 38999999999999999999999874
No 5
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed
Probab=100.00 E-value=8.2e-40 Score=292.51 Aligned_cols=247 Identities=32% Similarity=0.418 Sum_probs=217.2
Q ss_pred CCCeEEEEeccCccCccchhhcHHHHHhCCCcceeeceEEeecCCCCCCcceeeCCHHHHHHHHHHHHhCCCc-ccCEEE
Q 022988 13 ETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLL-YYTHLL 91 (289)
Q Consensus 13 ~~~~vl~i~g~~~~G~vG~~~~~~~l~~~Gv~~~~v~~~~~~~~tg~~~i~g~~l~~~~~~~~~~~l~~~~~~-~~~~v~ 91 (289)
.|.+||+|++++.+|++|+.+.+.+|+.+|++++.++++.+++||||..+.+..++++.+..+++.|.+...+ ++|+|+
T Consensus 14 ~~~~vl~i~~~~~~G~v~~~~a~~~l~~~G~~v~~lpTv~~s~~~~y~~~~~~~~~~~~i~~~l~~~~~~~~l~~~d~i~ 93 (281)
T PRK08176 14 LQADIVAVQSQVVYGSVGNSIAVPAIKANGLRVFAVPTVLLSNTPHYPTFYGGAIPDEWFSGYLRALQERDALRQLRAVT 93 (281)
T ss_pred ccceEEEEeceeeecccccHHHHHHHHHcCCcccccceEeecCCCCCCCcCCeeCCHHHHHHHHHHHHhcCccccCCEEE
Confidence 4678999999999999999999999999999999999999999999988777788889999999999886543 689999
Q ss_pred EeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCC-ccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhCCCCCC
Q 022988 92 TGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGK-LYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGS 170 (289)
Q Consensus 92 ~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~-~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g~~~~~ 170 (289)
+|++++....+.+.++++..+..+++.++|+||++++.++ +|.+++..+.+++.+++++|+++||..|++.|+|.++.+
T Consensus 94 ~G~l~s~~~~~~i~~~l~~~~~~~~~~~vv~DPvm~d~~~~~~~~~~~~~~~~~~Ll~~advitPN~~Ea~~L~g~~~~~ 173 (281)
T PRK08176 94 TGYMGSASQIKILAEWLTALRADHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQHLLPLAQGLTPNIFELEILTGKPCRT 173 (281)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCCcEEeCCccccCCCCeEECccHHHHHHHHhHhhcCEeCCCHHHHHHHhCCCCCC
Confidence 9999999999999999998876546789999999997664 777778788887668999999999999999999988777
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeeeecCC-------cEEEecc----------cCCCCCchHHHHHHHHHHHccCCCCHHH
Q 022988 171 EADGREACKILHAAGPAKVVITSINIDG-------NLFLIGS----------HQKEKGTGDLMTALLLGWSNKYRDNLDI 233 (289)
Q Consensus 171 ~~~~~~a~~~L~~~g~~~Vvvt~g~~~G-------~~~~~~~----------~~dt~GAGD~f~g~l~~~l~~~g~~~~~ 233 (289)
.+++.+++++|+++|++.|+||+|+ .| .+++.++ .++++||||+|+|+|++++++ |.++++
T Consensus 174 ~~~~~~~~~~l~~~g~~~VvIT~g~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaGD~faa~~~a~l~~-g~~l~~ 251 (281)
T PRK08176 174 LDSAIAAAKSLLSDTLKWVVITSAA-GNEENQEMQVVVVTADSVNVISHPRVDTDLKGTGDLFCAELVSGLLK-GKALTD 251 (281)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeecc-CCCCCCcEEEEEEeCCceEEEecCccCCCCCChhHHHHHHHHHHHhc-CCCHHH
Confidence 8888899999999999999999997 55 3444322 268999999999999999998 999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccccccc
Q 022988 234 AAELAVSSLQALLQRTVNDYVTAGFDPQSSSLEIRLIQ 271 (289)
Q Consensus 234 A~~~A~a~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (289)
|+++|..+.+.+++.+.+. ...||++++
T Consensus 252 Av~~A~~~v~~~i~~t~~~----------~~~~~~~~~ 279 (281)
T PRK08176 252 AAHRAGLRVLEVMRYTQQA----------GSDELILPP 279 (281)
T ss_pred HHHHHHHHHHHHHHHHHHc----------CCccccccC
Confidence 9999999999999999773 378888775
No 6
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=100.00 E-value=3.2e-39 Score=289.59 Aligned_cols=262 Identities=44% Similarity=0.693 Sum_probs=227.6
Q ss_pred CCeEEEEeccCccCccchhhcHHHHHhCCCcceeeceEEeecCCCCCCcceeeCCHHHHHHHHHHHHhCCCc-ccCEEEE
Q 022988 14 TGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLL-YYTHLLT 92 (289)
Q Consensus 14 ~~~vl~i~g~~~~G~vG~~~~~~~l~~~Gv~~~~v~~~~~~~~tg~~~i~g~~l~~~~~~~~~~~l~~~~~~-~~~~v~~ 92 (289)
|++||+|++++.+|++|+.+.+..|+.+|+++..++|+.+++||++..+.|..+++++++.+++.+.....+ ++|++++
T Consensus 1 ~~~vl~i~~~~~~g~~~~~~~~~~l~~~g~~~~~~pT~~~s~h~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~v~~ 80 (286)
T TIGR00687 1 MKNVLSIQSHVVYGHVGNRAATFPLQRLGFEVWAVNTVQFSNHTGYGKWTGQVLPPDELTELVDGLAAINKLNQCDAVLS 80 (286)
T ss_pred CCeEEEEcCceecccccCchHHHHHHHcCCcceeeCcEEcCCCCCCCCCcCeECCHHHHHHHHHHHHhcCccccCCEEEE
Confidence 679999999999999999999999999999999999999999999988889999999999999998654332 5889999
Q ss_pred eecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCC-ccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhCCCCCCH
Q 022988 93 GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGK-LYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSE 171 (289)
Q Consensus 93 G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~-~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g~~~~~~ 171 (289)
|++++..+.+.+.++++.+|+.+|++.+++||++++.+. .|.+++..+.+++.+++++|+++||..|++.|+|.+..+.
T Consensus 81 G~l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~d~~~~~~~~~~~~~~~~~~ll~~adii~pN~~Ea~~L~g~~~~~~ 160 (286)
T TIGR00687 81 GYLGSAEQVAMVVGIVRQVKQANPQALYVCDPVMGDPEKGCYVAPDLLEVYREKAIPVADIITPNQFELELLTGRKINTV 160 (286)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCCcEEECCeeeeCCCCeeeChhHHHHHHHhccccccEecCCHHHHHHHhCCCcCCH
Confidence 999999999999999999998645678999999997643 5567777788877789999999999999999999888778
Q ss_pred HHHHHHHHHHHhcCCCeEEEe-eeecCCc--------EEEecc------------cCCCCCchHHHHHHHHHHHccCCCC
Q 022988 172 ADGREACKILHAAGPAKVVIT-SINIDGN--------LFLIGS------------HQKEKGTGDLMTALLLGWSNKYRDN 230 (289)
Q Consensus 172 ~~~~~a~~~L~~~g~~~Vvvt-~g~~~G~--------~~~~~~------------~~dt~GAGD~f~g~l~~~l~~~g~~ 230 (289)
+++.++++.|+++|++.|++| .|. +|. ++..++ .+|++||||+|+|+|++++.+ |.+
T Consensus 161 ~~~~~~~~~l~~~g~~~Viit~~g~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~A~~l~~l~~-g~~ 238 (286)
T TIGR00687 161 EEALAAADALIAMGPDIVLVTHLAR-AGSQRDRDFEGLVVTQEGRWHISRPLAVFMRQPVGTGDLIAALLLATLLH-GNS 238 (286)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeccc-cCCCCCcceeEEEEcCCceEEEeccCcCCCCCCCChHHHHHHHHHHHHhc-CCC
Confidence 888899999999999999999 454 443 222211 157899999999999999998 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccccccccccccccCCccceeeee
Q 022988 231 LDIAAELAVSSLQALLQRTVNDYVTAGFDPQSSSLEIRLIQSQDDIRNPQVKFKSEK 287 (289)
Q Consensus 231 ~~~A~~~A~a~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (289)
+++|+++|+++.+.+++++.+. ...|+++++.+..+..|..+|.++|
T Consensus 239 ~~~al~~A~~~v~~~l~~t~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (286)
T TIGR00687 239 LKEALEKTVSAVYHVLVTTIAL----------GKYELQPVAAQLEIRMPQSKFDAEK 285 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc----------CCcchhhhhChHHHhCCcccceeee
Confidence 9999999999999999999773 2457989999999999999999987
No 7
>PTZ00344 pyridoxal kinase; Provisional
Probab=100.00 E-value=3.7e-38 Score=283.88 Aligned_cols=273 Identities=47% Similarity=0.743 Sum_probs=230.7
Q ss_pred CCCCCeEEEEeccCccCccchhhcHHHHHhCCCcceeeceEEeecCCCCCCcceeeCCHHHHHHHHHHHHhCCC-cccCE
Q 022988 11 PSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNL-LYYTH 89 (289)
Q Consensus 11 ~~~~~~vl~i~g~~~~G~vG~~~~~~~l~~~Gv~~~~v~~~~~~~~tg~~~i~g~~l~~~~~~~~~~~l~~~~~-~~~~~ 89 (289)
++.|++||+|+|++.+|++|+.++...++.+|+++.+++++.+++++++..+.|..+++++++.+++.|.+... ..+++
T Consensus 1 ~~~~~~vl~i~~~~~~G~~G~~~~~~~l~~~g~~~~~~~tv~ls~~~~~~~~~g~~i~~~~~~~~l~~l~~~~~~~~~~~ 80 (296)
T PTZ00344 1 MSMEKKVLSIQSHVTHGYVGNRAATFPLQLLGFDVDFVNTVQLSNHTGYPVIKGHRLDLNELITLMDGLRANNLLSDYTY 80 (296)
T ss_pred CCCCCeEEEEcceeecccccchhHHHHHHHcCCcceeeccEecCCCCCCCCccCeeCCHHHHHHHHHHHHhcCCcccCCE
Confidence 46788999999999999999999888899999999999999888999987778899999999999999987432 24789
Q ss_pred EEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhCCCCC
Q 022988 90 LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIG 169 (289)
Q Consensus 90 v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g~~~~ 169 (289)
|++|++++.+..+.+.++++.++++.+++++|+||+++++|++|..++..+.++. +++++|+++||+.|++.|+|.+..
T Consensus 81 v~sG~l~~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~~~~~~~~~~~-ll~~~dii~pN~~E~~~L~g~~~~ 159 (296)
T PTZ00344 81 VLTGYINSADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLYVKEEVVDAYRE-LIPYADVITPNQFEASLLSGVEVK 159 (296)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCceEeCHHHHHHHHH-HhhhCCEEeCCHHHHHHHhCCCCC
Confidence 9999999988888888888888776444689999999988888888888888874 999999999999999999998877
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEeeeec--CC----cEEEe-------c-------c--cCCCCCchHHHHHHHHHHHccC
Q 022988 170 SEADGREACKILHAAGPAKVVITSINI--DG----NLFLI-------G-------S--HQKEKGTGDLMTALLLGWSNKY 227 (289)
Q Consensus 170 ~~~~~~~a~~~L~~~g~~~Vvvt~g~~--~G----~~~~~-------~-------~--~~dt~GAGD~f~g~l~~~l~~~ 227 (289)
+.+++.++++.|.++|++.|+||+++. +| .++.. . . ..+++||||+|+|+|++.+.+
T Consensus 160 ~~~~~~~~~~~l~~~g~~~VvVTg~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GaGD~f~A~~~a~l~~- 238 (296)
T PTZ00344 160 DLSDALEAIDWFHEQGIPVVVITSFREDEDPTHLRFLLSCRDKDTKNNKRFTGKVPYIEGRYTGTGDLFAALLLAFSHQ- 238 (296)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEeecCCCCCCcEEEEEEeccccCCCceeEEEeccccCCCCCCchHHHHHHHHHHHhc-
Confidence 777888899999988999999996541 34 23321 0 0 146799999999999999987
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccccccccccccccCCccceeeeec
Q 022988 228 RDNLDIAAELAVSSLQALLQRTVNDYVTAGFDPQSSSLEIRLIQSQDDIRNPQVKFKSEKY 288 (289)
Q Consensus 228 g~~~~~A~~~A~a~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (289)
| ++++|+++|.++.+.+++.+.+.+ +.|+.+. ...||+++++++.++.|...|++++.
T Consensus 239 g-~~~~a~~~A~a~~~~~i~~~~~~~-~~~~~~~-~~~el~~~~~~~~~~~~~~~~~~~~~ 296 (296)
T PTZ00344 239 H-PMDLAVGKAMGVLQDIIKATRESG-GSGSSSL-MSRELRLIQSPRDLLNPETVFKVTPL 296 (296)
T ss_pred C-CHHHHHHHHHHHHHHHHHHHHHhC-cCCCCCC-CCceeeeccChHHHhCCCcceEEEEC
Confidence 7 999999999999999999998742 2233333 47999999999999999999999873
No 8
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=100.00 E-value=2.8e-37 Score=267.04 Aligned_cols=241 Identities=24% Similarity=0.322 Sum_probs=202.5
Q ss_pred CCCeEEEEeccCccCccchhhcHHHHHhCCC-cceeeceEEeecCCCCCCcceeeCCHHHHHHHHHHHHhCCCcccCEEE
Q 022988 13 ETGRVLSIQSHTVQGYVGNKSAVFPLQLLGY-DVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLL 91 (289)
Q Consensus 13 ~~~~vl~i~g~~~~G~vG~~~~~~~l~~~Gv-~~~~v~~~~~~~~tg~~~i~g~~l~~~~~~~~~~~l~~~~~~~~~~v~ 91 (289)
.++++|+|.|+|+.|++|..+++++++++|+ .++.++.++.||+.|...+ ..++++.++++++.+.+.- .+++++
T Consensus 2 ~~~~~LtIAGsD~sGGAGIqADLKTf~a~gvyg~saITaltaQNt~gV~~v--~~v~~~~v~~Ql~av~~D~--~v~avK 77 (263)
T COG0351 2 KLPVVLTIAGSDSSGGAGIQADLKTFQALGVYGMSAITALTAQNTLGVHGV--HPVPPEFVEAQLDAVFSDI--PVDAVK 77 (263)
T ss_pred CCceEEEEeccCCCccHHHHHHHHHHHhcCCccceEEEEEEEeecCceeeE--EeCCHHHHHHHHHHHhhcC--CCCEEE
Confidence 4678999999999999999999999999996 6677888888888775544 6788888888888766543 488999
Q ss_pred EeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccc-cCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhCC-CCC
Q 022988 92 TGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG-DEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGF-RIG 169 (289)
Q Consensus 92 ~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~-~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g~-~~~ 169 (289)
+|+|++.+..+.+.+.+++.. -.++|+||+|. .+|..+..++..+.++++|+|+++++|||..|++.|+|. ++.
T Consensus 78 tGML~~~eiie~va~~l~~~~----~~~vV~DPVmvaksG~~Ll~~~a~~~l~~~LlP~a~vvTPNl~EA~~L~g~~~i~ 153 (263)
T COG0351 78 TGMLGSAEIIEVVAEKLKKYG----IGPVVLDPVMVAKSGDPLLDEEAVEALREELLPLATVVTPNLPEAEALSGLPKIK 153 (263)
T ss_pred ECCcCCHHHHHHHHHHHHhcC----CCcEEECceEEEcCCCcccChHHHHHHHHHhhccCeEecCCHHHHHHHcCCCccC
Confidence 999999877777776665542 15699999998 466677889999999988999999999999999999994 889
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEeeeecCC---cEEEec-------c----cCCCCCchHHHHHHHHHHHccCCCCHHHHH
Q 022988 170 SEADGREACKILHAAGPAKVVITSINIDG---NLFLIG-------S----HQKEKGTGDLMTALLLGWSNKYRDNLDIAA 235 (289)
Q Consensus 170 ~~~~~~~a~~~L~~~g~~~Vvvt~g~~~G---~~~~~~-------~----~~dt~GAGD~f~g~l~~~l~~~g~~~~~A~ 235 (289)
+.+++.++++.+.++|+++|+||+|+..| .+++.+ . ..+++|+||+|++++++.|++ |.++++|+
T Consensus 154 ~~~d~~~a~~~i~~~g~~~VliKGGH~~~~~~D~l~~~~~~~~f~~~ri~t~~tHGTGCTlSaAIaa~LA~-G~~l~~AV 232 (263)
T COG0351 154 TEEDMKEAAKLLHELGAKAVLIKGGHLEGEAVDVLYDGGSFYTFEAPRIPTKNTHGTGCTLSAAIAANLAK-GLSLEEAV 232 (263)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCCCCCCCceeEEEcCCceEEEeccccCCCCCCCccHHHHHHHHHHHHc-CCCHHHHH
Confidence 99999999888899999999999998554 122222 1 146899999999999999999 99999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCC
Q 022988 236 ELAVSSLQALLQRTVNDYVTAGFDPQS 262 (289)
Q Consensus 236 ~~A~a~a~~~l~~~~~~~~~~~~~~~~ 262 (289)
+.|..+...+++++..-++++|+.++.
T Consensus 233 ~~Ak~fv~~AI~~~~~~G~g~gpv~~~ 259 (263)
T COG0351 233 KKAKEFVTRAIRDSLAIGHGHGPVNHF 259 (263)
T ss_pred HHHHHHHHHHHhhhccCCCccccCCcc
Confidence 999999999999887777777765543
No 9
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=100.00 E-value=1.3e-34 Score=255.45 Aligned_cols=234 Identities=52% Similarity=0.817 Sum_probs=199.5
Q ss_pred eEEEEeccCccCccchhhcHHHHHhCCCcceeeceEEeecCCCCCCcceeeCCHHHHHHHHHHHHhCC-CcccCEEEEee
Q 022988 16 RVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANN-LLYYTHLLTGY 94 (289)
Q Consensus 16 ~vl~i~g~~~~G~vG~~~~~~~l~~~Gv~~~~v~~~~~~~~tg~~~i~g~~l~~~~~~~~~~~l~~~~-~~~~~~v~~G~ 94 (289)
+||+|+|++++|++|..+++++++.+|+++..++|...+++++.....+..+++++++.+++.+.+.. ..++++|++|+
T Consensus 1 ~vl~i~~~~~~g~ag~~ad~~~~~~~g~~~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~ 80 (254)
T cd01173 1 RVLSIQSHVVHGYVGNSAAVFPLQRLGWDVDALPTVQFSNHTGYGTWTGFVLSAEELEDLLEGLEALGLLLEYDAVLTGY 80 (254)
T ss_pred CEEEEecceecceECCeeHHHHHHHcCCccceeCceecCCCCCCCCCCCeecCHHHHHHHHHHHHHcCCcccCCEEEEec
Confidence 68999999999999999999999999999999998876667765423567899999999999988753 23578999999
Q ss_pred cCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcc-CChhHHHHHHHhhcCCceEEcCCHHHHHHhhCCCCCCHHH
Q 022988 95 IGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLY-VPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEAD 173 (289)
Q Consensus 95 l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~-~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g~~~~~~~~ 173 (289)
+++....+.+.++++.++++.|+++++|||++++++.+| .+++..+.+++.+.+++|+++||..|++.|+|.+..+.++
T Consensus 81 l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~l~~~~dvi~pN~~Ea~~l~g~~~~~~~~ 160 (254)
T cd01173 81 LGSAEQVEAVAEIVKRLKEKNPNLLYVCDPVMGDNGKLYVVAEEIVPVYRDLLVPLADIITPNQFELELLTGKKINDLED 160 (254)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCceEEECCCCCcCCcceecChhHHHHHHHHHHhcCCEECCcHHHHHHHcCCCcCCHHH
Confidence 999999999999999998644578999999998777777 4777788887744459999999999999999998878888
Q ss_pred HHHHHHHHHhcCCCeEEEeeeec-----CCcEEEecc----------c--CCCCCchHHHHHHHHHHHccCCCCHHHHHH
Q 022988 174 GREACKILHAAGPAKVVITSINI-----DGNLFLIGS----------H--QKEKGTGDLMTALLLGWSNKYRDNLDIAAE 236 (289)
Q Consensus 174 ~~~a~~~L~~~g~~~Vvvt~g~~-----~G~~~~~~~----------~--~dt~GAGD~f~g~l~~~l~~~g~~~~~A~~ 236 (289)
.++++++|+++|++.|+||+|+. .|.++..++ . +|++||||+|+|+|+++|++ |+++++|++
T Consensus 161 ~~~~~~~l~~~g~~~Vvit~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~GaGD~f~a~~~~~l~~-g~~~~~a~~ 239 (254)
T cd01173 161 AKAAARALHAKGPKTVVVTSVELADDDRIEMLGSTATEAWLVQRPKIPFPAYFNGTGDLFAALLLARLLK-GKSLAEALE 239 (254)
T ss_pred HHHHHHHHHHhCCCEEEEEeeccCCCCcEEEEEEecCccEEEEeeccCCCCCcCChHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 99999999999999999999862 145544321 2 68999999999999999998 999999999
Q ss_pred HHHHHHHHHHHHHH
Q 022988 237 LAVSSLQALLQRTV 250 (289)
Q Consensus 237 ~A~a~a~~~l~~~~ 250 (289)
+|+++.+.+++.+.
T Consensus 240 ~A~~~~~~~i~~~~ 253 (254)
T cd01173 240 KALNFVHEVLEATY 253 (254)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998774
No 10
>PRK07105 pyridoxamine kinase; Validated
Probab=100.00 E-value=1.6e-34 Score=258.80 Aligned_cols=235 Identities=27% Similarity=0.393 Sum_probs=199.6
Q ss_pred CCCCeEEEEeccCccCccchhhcHHHHHhCCCcceeeceEEeecCCC-CCCcceeeCCHHHHHHHHHHHHhCCCcccCEE
Q 022988 12 SETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTG-YPTFKGQVLNGQQLCDLIEGLEANNLLYYTHL 90 (289)
Q Consensus 12 ~~~~~vl~i~g~~~~G~vG~~~~~~~l~~~Gv~~~~v~~~~~~~~tg-~~~i~g~~l~~~~~~~~~~~l~~~~~~~~~~v 90 (289)
..|++||++++++.+|++|+.+++++++.+|+++..++|...+++|+ +..+.+..+ .++++.+++.|.+.+. .+++|
T Consensus 2 ~~~~~vl~~~d~~~~G~aG~~adi~~~~~~g~~~~~v~T~~~~q~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~ai 79 (284)
T PRK07105 2 NPVKRVAAIHDLSGFGRVALTASIPIMSSMGLQVCPLPTALLSSHTGGFQNPSIIDL-TDGMQAFLTHWKSLNL-KFDAI 79 (284)
T ss_pred CCCCeEEEEecccccceehHhhHHHHHHHcCCcceeccceEeccCCCCCCCCeEeec-HHHHHHHHHHHHHcCC-ccCEE
Confidence 36889999999999999999999999999999999998887777775 766555555 5788999998888765 68999
Q ss_pred EEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcc--CChhHHHHHHHhhcCCceEEcCCHHHHHHhhCCCC
Q 022988 91 LTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLY--VPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRI 168 (289)
Q Consensus 91 ~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~--~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g~~~ 168 (289)
++|++++....+.+.++++.+++. ++++++||++++++++| .+++..+.+++ +++++|+++||+.|++.|+|.++
T Consensus 80 k~G~l~~~~~~~~v~~~~~~~~~~--~~~vv~DPv~~~~~~l~~~~~~~~~~~~~~-ll~~advitpN~~Ea~~L~g~~~ 156 (284)
T PRK07105 80 YSGYLGSPRQIQIVSDFIKYFKKK--DLLVVVDPVMGDNGKLYQGFDQEMVEEMRK-LIQKADVITPNLTEACLLLDKPY 156 (284)
T ss_pred EECcCCCHHHHHHHHHHHHHhccC--CCeEEECCccccCCcCCCCCCHHHHHHHHH-HHhhCCEecCCHHHHHHHcCCCc
Confidence 999999998899999998888764 88999999998776666 36777777875 99999999999999999999865
Q ss_pred C----CHHHHHHHHHHHHhcCCCeEEEeeeec----CCcEEEecc------------cCCCCCchHHHHHHHHHHHccCC
Q 022988 169 G----SEADGREACKILHAAGPAKVVITSINI----DGNLFLIGS------------HQKEKGTGDLMTALLLGWSNKYR 228 (289)
Q Consensus 169 ~----~~~~~~~a~~~L~~~g~~~Vvvt~g~~----~G~~~~~~~------------~~dt~GAGD~f~g~l~~~l~~~g 228 (289)
. +.+++.+++++|++.|++.|+||+++. .|.+++... .++++||||+|+|+|++++++ |
T Consensus 157 ~~~~~~~~~~~~~a~~l~~~g~~~Vvvt~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~GaGD~f~aa~~~~l~~-g 235 (284)
T PRK07105 157 LEKSYSEEEIKQLLRKLADLGPKIVIITSVPFEDGKIGVAYYDRATDRFWKVFCKYIPAHYPGTGDIFTSVITGSLLQ-G 235 (284)
T ss_pred CcCCCCHHHHHHHHHHHHhcCCCEEEEcCeeeCCCeEEEEEEeCCCCeEEEEeecccCCCcCChhHHHHHHHHHHHhC-C
Confidence 3 467888899999999999999999442 345544321 267899999999999999998 9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHh
Q 022988 229 DNLDIAAELAVSSLQALLQRTVND 252 (289)
Q Consensus 229 ~~~~~A~~~A~a~a~~~l~~~~~~ 252 (289)
+++++|+++|.++++.+++++...
T Consensus 236 ~~l~~av~~A~~~~~~~i~~~~~~ 259 (284)
T PRK07105 236 DSLPIALDRAVQFIEKGIRATLGL 259 (284)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999774
No 11
>PRK12412 pyridoxal kinase; Reviewed
Probab=100.00 E-value=1.9e-33 Score=249.89 Aligned_cols=245 Identities=23% Similarity=0.236 Sum_probs=190.5
Q ss_pred CCeEEEEeccCccCccchhhcHHHHHhCCCcceeece-EEeecCCCCCCcceeeCCHHHHHHHHHHHHhCCCcccCEEEE
Q 022988 14 TGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHS-VQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLT 92 (289)
Q Consensus 14 ~~~vl~i~g~~~~G~vG~~~~~~~l~~~Gv~~~~v~~-~~~~~~tg~~~i~g~~l~~~~~~~~~~~l~~~~~~~~~~v~~ 92 (289)
.+.||+|+|+|+.|++|+.+++++++++|+....+.+ .+.+++.+........++++.++++++.+.+.. ++++|++
T Consensus 1 ~~~vl~iag~D~sggaGi~aD~~t~~~lg~~~~~v~Ta~t~q~~~~~~~~~v~~~~~~~i~~q~~~l~~d~--~~~~iki 78 (268)
T PRK12412 1 LNKALTIAGSDTSGGAGIQADLKTFQELGVYGMTSLTTIVTMDPHNGWAHNVFPIPASTLKPQLETTIEGV--GVDALKT 78 (268)
T ss_pred CCeEEEEEeeCCCchHHHHHHHHHHHHcCCeeceeeeEEEeEcCCCCcEEEEEeCCHHHHHHHHHHHHhCC--CCCEEEE
Confidence 3689999999999999999999999999998876654 444555442111235678888888877776543 4889999
Q ss_pred eecCCHhHHHHHHHHHHHHHhcCCCce-EEEccccccCCC-ccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhCCCCCC
Q 022988 93 GYIGSVSFLNTILQVVEKLRSINPNLI-YVCDPVMGDEGK-LYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGS 170 (289)
Q Consensus 93 G~l~~~~~~~~~~~~l~~~k~~~~~~~-vv~Dp~~~~~g~-~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g~~~~~ 170 (289)
|++++.+..+.+.++++ +. +.+ +|+||++.+++. .+..++..+.+++.+++++|+++||+.|++.|+|.++.+
T Consensus 79 G~l~~~~~v~~i~~~~~---~~--~~~~vv~DPv~~~~~g~~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L~g~~~~~ 153 (268)
T PRK12412 79 GMLGSVEIIEMVAETIE---KH--NFKNVVVDPVMVCKGADEALHPETNDCLRDVLVPKALVVTPNLFEAYQLSGVKINS 153 (268)
T ss_pred CCCCCHHHHHHHHHHHH---hc--CCCCEEECcCeeeCCCCcCCChHHHHHHHHhhhccceEEcCCHHHHHHHhCcCCCC
Confidence 99998776666665554 33 444 999999986443 344555566677678999999999999999999988888
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeeeecCCc------EEEecc-----------cCCCCCchHHHHHHHHHHHccCCCCHHH
Q 022988 171 EADGREACKILHAAGPAKVVITSINIDGN------LFLIGS-----------HQKEKGTGDLMTALLLGWSNKYRDNLDI 233 (289)
Q Consensus 171 ~~~~~~a~~~L~~~g~~~Vvvt~g~~~G~------~~~~~~-----------~~dt~GAGD~f~g~l~~~l~~~g~~~~~ 233 (289)
.+++.+++++|+++|++.|+||+|+ .|. ++..++ .++++||||+|+|+|+++|++ |+++++
T Consensus 154 ~~~~~~aa~~l~~~g~~~ViIt~G~-~g~~~~~~~~~~~~~~~~~~~~~~v~~~~t~GaGD~f~aa~aa~l~~-g~~l~e 231 (268)
T PRK12412 154 LEDMKEAAKKIHALGAKYVLIKGGS-KLGTETAIDVLYDGETFDLLESEKIDTTNTHGAGCTYSAAITAELAK-GKPVKE 231 (268)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeccC-CCCCCceEEEEEeCCEEEEEEeCccCCCCCCchHHHHHHHHHHHHHC-CCCHHH
Confidence 8889999999999999999999997 432 222211 257899999999999999998 999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccc
Q 022988 234 AAELAVSSLQALLQRTVNDYVTAGFDPQSSSLEI 267 (289)
Q Consensus 234 A~~~A~a~a~~~l~~~~~~~~~~~~~~~~~~~~~ 267 (289)
|+++|.+++.++++.+.+.+++.|+..+..|..+
T Consensus 232 A~~~A~~~~~~~i~~~~~~g~g~~~~~~~~~~~~ 265 (268)
T PRK12412 232 AVKTAKEFITAAIRYSFKINEYVGPTHHGAYRKF 265 (268)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCcCccchhhc
Confidence 9999999999999999886655555544444433
No 12
>PRK12616 pyridoxal kinase; Reviewed
Probab=100.00 E-value=2.4e-33 Score=249.44 Aligned_cols=236 Identities=20% Similarity=0.208 Sum_probs=188.8
Q ss_pred CCeEEEEeccCccCccchhhcHHHHHhCCCcc-eeeceEEeecCCCCCCcceeeCCHHHHHHHHHHHHhCCCcccCEEEE
Q 022988 14 TGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDV-DPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLT 92 (289)
Q Consensus 14 ~~~vl~i~g~~~~G~vG~~~~~~~l~~~Gv~~-~~v~~~~~~~~tg~~~i~g~~l~~~~~~~~~~~l~~~~~~~~~~v~~ 92 (289)
|++||+|+|+|+.|++|..+++++++++|+.. ..++..+.||+.++.......++++.+..+++.+.+.. ++++|++
T Consensus 3 ~~~vl~iaG~D~sggaGi~aD~~t~~~~g~~~~~~~T~~t~q~~~~~~~~~v~~~~~~~i~~ql~~l~~d~--~~~aiki 80 (270)
T PRK12616 3 MHKALTIAGSDSSGGAGIQADLKTFQEKNVYGMTALTVVVAMDPENSWDHQVFPIDTDTIRAQLSTIVDGI--GVDAMKT 80 (270)
T ss_pred CCeEEEEEeeCCCchHHHHHHHHHHHHcCCcccceeeEEeeEeCCCcceeEEEECCHHHHHHHHHHHHcCC--CCCEEEE
Confidence 57899999999999999999999999999755 44555666666553112235788888888888777543 5899999
Q ss_pred eecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccC-CCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhCC-CCCC
Q 022988 93 GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDE-GKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGF-RIGS 170 (289)
Q Consensus 93 G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~-g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g~-~~~~ 170 (289)
|++++.+..+.+.+.++..+ ..++|+||+++.+ +..+..++..+.+++.+++++|+++||..|++.|+|. +..+
T Consensus 81 G~l~s~~~i~~i~~~l~~~~----~~~vV~DPV~~~~~g~~~l~~~~~~~l~~~L~~~advitpN~~Ea~~L~g~~~~~~ 156 (270)
T PRK12616 81 GMLPTVDIIELAADTIKEKQ----LKNVVIDPVMVCKGANEVLYPEHAEALREQLAPLATVITPNLFEAGQLSGMGEIKT 156 (270)
T ss_pred CCCCCHHHHHHHHHHHHhcC----CCCEEEccceecCCCCcccCHHHHHHHHHHhhccceEecCCHHHHHHHcCCCCCCC
Confidence 99999887777777665542 2469999999753 3344456777778777899999999999999999997 5677
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeeeecCC------cEEEecc-----------cCCCCCchHHHHHHHHHHHccCCCCHHH
Q 022988 171 EADGREACKILHAAGPAKVVITSINIDG------NLFLIGS-----------HQKEKGTGDLMTALLLGWSNKYRDNLDI 233 (289)
Q Consensus 171 ~~~~~~a~~~L~~~g~~~Vvvt~g~~~G------~~~~~~~-----------~~dt~GAGD~f~g~l~~~l~~~g~~~~~ 233 (289)
.+++.++++.|+++|++.|+||+|+ .| .+++.++ ..+++||||+|+|+|+++|++ |+++++
T Consensus 157 ~~~~~~aa~~l~~~G~~~VvVt~G~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~t~GaGD~fsaalaa~l~~-g~~l~~ 234 (270)
T PRK12616 157 VEQMKEAAKKIHELGAQYVVITGGG-KLKHEKAVDVLYDGETAEVLESEMIDTPYTHGAGCTFSAAVTAELAK-GSEVKE 234 (270)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCC-CCcCCceEEEEEECCeEEEEEeeeeCCCCCCcHHHHHHHHHHHHHHC-CCCHHH
Confidence 7889999999999999999999996 43 1333321 146799999999999999998 999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcC
Q 022988 234 AAELAVSSLQALLQRTVNDYVTAG 257 (289)
Q Consensus 234 A~~~A~a~a~~~l~~~~~~~~~~~ 257 (289)
|+++|.++++.+++.+.+.+++.|
T Consensus 235 Av~~A~~~~~~~i~~s~~~g~~~~ 258 (270)
T PRK12616 235 AIYAAKEFITAAIKESFPLNQYVG 258 (270)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCC
Confidence 999999999999999987654444
No 13
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=100.00 E-value=1.2e-32 Score=242.87 Aligned_cols=226 Identities=23% Similarity=0.305 Sum_probs=182.9
Q ss_pred EEEEeccCccCccchhhcHHHHHhCCCccee-eceEEeecCCCCCCcceeeCCHHHHHHHHHHHHhCCCcccCEEEEeec
Q 022988 17 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDP-IHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYI 95 (289)
Q Consensus 17 vl~i~g~~~~G~vG~~~~~~~l~~~Gv~~~~-v~~~~~~~~tg~~~i~g~~l~~~~~~~~~~~l~~~~~~~~~~v~~G~l 95 (289)
||+|+|+|++|+.|..+++++++++|+.... ++..+.|++.++..+ ..++++.+.++++.+.+.. ++++|++|++
T Consensus 1 vl~iag~D~sggaGi~aD~~t~~~~g~~~~~v~T~~t~q~~~~v~~~--~~~~~~~~~~q~~~~~~d~--~~~aikiG~l 76 (254)
T TIGR00097 1 ALTIAGSDSGGGAGIQADLKTFSALGVFGTSVITALTAQNTRGVTGV--YPIPPDFVEAQLDAVFSDI--PVDAAKTGML 76 (254)
T ss_pred CEEEeeeCCCcHHHHHHHHHHHHHcCCeecceeEEEEeEcCcceEEE--EECCHHHHHHHHHHHHhCC--CCCEEEECCc
Confidence 6999999999999999999999999986654 455666777665443 6788889998888887643 4889999999
Q ss_pred CCHhHHHHHHHHHHHHHhcCCCc-eEEEccccc-cCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhCCCCCCHHH
Q 022988 96 GSVSFLNTILQVVEKLRSINPNL-IYVCDPVMG-DEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEAD 173 (289)
Q Consensus 96 ~~~~~~~~~~~~l~~~k~~~~~~-~vv~Dp~~~-~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g~~~~~~~~ 173 (289)
.+.+..+.+. +.+++. +. ++|+||+++ .+|..+.+++..+.+++.+++++|+++||..|++.|+|.+..+.++
T Consensus 77 ~~~~~~~~i~---~~~~~~--~~~~vVlDPv~~~~~g~~l~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g~~~~~~~~ 151 (254)
T TIGR00097 77 ASAEIVEAVA---RKLREY--PVRPLVVDPVMVAKSGAPLLEEEAIEALRKRLLPLATLITPNLPEAEALLGTKIRTEQD 151 (254)
T ss_pred CCHHHHHHHH---HHHHhc--CCCcEEECCccccCCCCcCCCHHHHHHHHHhccccccEecCCHHHHHHHhCCCCCCHHH
Confidence 8875555444 445554 66 699999987 3555555666666666668899999999999999999988777788
Q ss_pred HHHHHHHHHhcCCCeEEEeeeec---CCc-EEEecc-----------cCCCCCchHHHHHHHHHHHccCCCCHHHHHHHH
Q 022988 174 GREACKILHAAGPAKVVITSINI---DGN-LFLIGS-----------HQKEKGTGDLMTALLLGWSNKYRDNLDIAAELA 238 (289)
Q Consensus 174 ~~~a~~~L~~~g~~~Vvvt~g~~---~G~-~~~~~~-----------~~dt~GAGD~f~g~l~~~l~~~g~~~~~A~~~A 238 (289)
..++++.|.++|++.|+||+|+. +|. +++.++ .+|++||||+|+|+|+++|++ |+++++|+++|
T Consensus 152 ~~~~a~~l~~~g~~~Vvvt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~aalaa~la~-g~~l~eA~~~A 230 (254)
T TIGR00097 152 MIKAAKKLRELGPKAVLIKGGHLEGDQAVDVLFDGGEIHILKAPRIETKNTHGTGCTLSAAIAANLAK-GLSLKEAVKEA 230 (254)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCceeEEEEECCeEEEEEecccCCCCCCChHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 88999999999999999999862 232 333321 157899999999999999998 99999999999
Q ss_pred HHHHHHHHHHHHHh
Q 022988 239 VSSLQALLQRTVND 252 (289)
Q Consensus 239 ~a~a~~~l~~~~~~ 252 (289)
+++++.+++++.+.
T Consensus 231 ~~~~~~~i~~~~~~ 244 (254)
T TIGR00097 231 KEFVTGAIRYGLNI 244 (254)
T ss_pred HHHHHHHHHHhhcC
Confidence 99999999998764
No 14
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=100.00 E-value=1.8e-32 Score=243.38 Aligned_cols=234 Identities=23% Similarity=0.291 Sum_probs=185.9
Q ss_pred CCCCeEEEEeccCccCccchhhcHHHHHhCCCcceeeceEEee-cCCCCCCcceeeCCHHHHHHHHHHHHhCCCcccCEE
Q 022988 12 SETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFS-NHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHL 90 (289)
Q Consensus 12 ~~~~~vl~i~g~~~~G~vG~~~~~~~l~~~Gv~~~~v~~~~~~-~~tg~~~i~g~~l~~~~~~~~~~~l~~~~~~~~~~v 90 (289)
..++.||+|+|++++|++|+.+++.+++.+|+.+..++|...+ +++++.. +..++++.+..+++.+.+.. .+++|
T Consensus 2 ~~~~~vl~i~g~d~~ggaG~~adi~~~~~~g~~~~~v~Ta~~~q~~~~~~~--~~~~~~~~~~~q~~~~~~~~--~~~ai 77 (266)
T PRK06427 2 MKRPIALTIAGSDSGGGAGIQADLKTFQALGVYGMSAITALTAQNTLGVQR--VHPIPPEFVAAQLDAVFSDI--RIDAV 77 (266)
T ss_pred CCCCEEEEEeecCCCCcHHHHHHHHHHHHcCCEEeeeeeEEEeecCCCeeE--EEeCCHHHHHHHHHHHHhcC--CCCEE
Confidence 3467899999999999999999999999999999998887654 4556433 35677788888777766533 58999
Q ss_pred EEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCC-CccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhCCCCC
Q 022988 91 LTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEG-KLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIG 169 (289)
Q Consensus 91 ~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g-~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g~~~~ 169 (289)
++|++++.+..+.+.+. +++. +..++|+||++++.+ ..+.+++..+.+++.+++++|+++||..|++.|+|.++.
T Consensus 78 ~iG~l~~~~~~~~i~~~---~~~~-~~~~vv~DPv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g~~~~ 153 (266)
T PRK06427 78 KIGMLASAEIIETVAEA---LKRY-PIPPVVLDPVMIAKSGDPLLADDAVAALRERLLPLATLITPNLPEAEALTGLPIA 153 (266)
T ss_pred EECCcCCHHHHHHHHHH---HHhC-CCCCEEEcCccccCCCCcCCCHHHHHHHHHhhhCcCeEEcCCHHHHHHHhCCCCC
Confidence 99999987655555544 4443 124799999998643 344566777777766899999999999999999998766
Q ss_pred CHHH-HHHHHHHHHhcCCCeEEEeeeec-CCc----EEEecc-----------cCCCCCchHHHHHHHHHHHccCCCCHH
Q 022988 170 SEAD-GREACKILHAAGPAKVVITSINI-DGN----LFLIGS-----------HQKEKGTGDLMTALLLGWSNKYRDNLD 232 (289)
Q Consensus 170 ~~~~-~~~a~~~L~~~g~~~Vvvt~g~~-~G~----~~~~~~-----------~~dt~GAGD~f~g~l~~~l~~~g~~~~ 232 (289)
+.++ ++++++.|.++|++.|+||+|+. +|. +++.++ .++++||||+|+|+|++++++ |++++
T Consensus 154 ~~~~~~~~~a~~l~~~g~~~Vvit~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~GaGD~f~a~l~~~l~~-g~~l~ 232 (266)
T PRK06427 154 DTEDEMKAAARALHALGCKAVLIKGGHLLDGEESVDWLFDGEGEERFSAPRIPTKNTHGTGCTLSAAIAAELAK-GASLL 232 (266)
T ss_pred CcHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCceeEEEEeCCcEEEEEeeeECCCCCCChHHHHHHHHHHHHHC-CCCHH
Confidence 5554 78899999999999999999962 332 443321 148899999999999999998 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 022988 233 IAAELAVSSLQALLQRTVNDYV 254 (289)
Q Consensus 233 ~A~~~A~a~a~~~l~~~~~~~~ 254 (289)
+|+++|+++++.+++++.+.+.
T Consensus 233 ~A~~~A~~~~~~~i~~~~~~~~ 254 (266)
T PRK06427 233 DAVQTAKDYVTRAIRHALEIGQ 254 (266)
T ss_pred HHHHHHHHHHHHHHHHHhccCC
Confidence 9999999999999999977543
No 15
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=100.00 E-value=1.5e-32 Score=240.34 Aligned_cols=224 Identities=22% Similarity=0.306 Sum_probs=183.7
Q ss_pred eEEEEeccCccCccchhhcHHHHHhCCCcceeeceEEeecCCCCCCcceeeCCHHHHHHHHHHHHhCCCcccCEEEEeec
Q 022988 16 RVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYI 95 (289)
Q Consensus 16 ~vl~i~g~~~~G~vG~~~~~~~l~~~Gv~~~~v~~~~~~~~tg~~~i~g~~l~~~~~~~~~~~l~~~~~~~~~~v~~G~l 95 (289)
.||+|+|+|++|++|..+++.+++.+|+++..++|...+++++ .......++++.+.++++.+.+. .++++|++|++
T Consensus 1 ~vl~i~g~d~~ggag~~adi~~~~~~g~~~~~~~T~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~G~l 77 (242)
T cd01169 1 VVLTIAGSDSSGGAGIQADLKTFAALGVYGMSVITALTAQNTL-GVFGVHPVPPEFVAAQLDAVLED--IPVDAIKIGML 77 (242)
T ss_pred CEEEEeeeCCCCHHHHHHHHHHHHHcCCEecceeEEEEeEcCc-ceeEEEECCHHHHHHHHHHHHhC--CCCCEEEECCC
Confidence 4899999999999999999999999999999988876666665 22334678888888888887764 25899999999
Q ss_pred CCHhHHHHHHHHHHHHHhcCCCceEEEccccccCC-CccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhCCCCCCHHHH
Q 022988 96 GSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEG-KLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADG 174 (289)
Q Consensus 96 ~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g-~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g~~~~~~~~~ 174 (289)
++....+.+.+++++. ++.++++||++++.+ ..+.+++..+.+++.+++++|+++||..|++.|+|.+..+.++.
T Consensus 78 ~~~~~~~~i~~~~~~~----~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g~~~~~~~~~ 153 (242)
T cd01169 78 GSAEIIEAVAEALKDY----PDIPVVLDPVMVAKSGDSLLDDDAIEALRELLLPLATLITPNLPEAELLTGLEIATEEDM 153 (242)
T ss_pred CCHHHHHHHHHHHHhC----CCCcEEECCceeCCCCCcccCHHHHHHHHHHhhccCeEEeCCHHHHHHHhCCCCCCHHHH
Confidence 9877777666665543 378999999998643 34456677777776688999999999999999999887777778
Q ss_pred HHHHHHHHhcCCCeEEEeeeecCC-----cEEEecc-----------cCCCCCchHHHHHHHHHHHccCCCCHHHHHHHH
Q 022988 175 REACKILHAAGPAKVVITSINIDG-----NLFLIGS-----------HQKEKGTGDLMTALLLGWSNKYRDNLDIAAELA 238 (289)
Q Consensus 175 ~~a~~~L~~~g~~~Vvvt~g~~~G-----~~~~~~~-----------~~dt~GAGD~f~g~l~~~l~~~g~~~~~A~~~A 238 (289)
.++++.|.++|++.|+||+|+ +| .+++.++ ..+++||||+|+|+|+++|++ |+++++|+++|
T Consensus 154 ~~~~~~l~~~g~~~Vvit~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaGD~f~a~l~a~l~~-g~~~~~A~~~A 231 (242)
T cd01169 154 MKAAKALLALGAKAVLIKGGH-LPGDEAVDVLYDGGGFFEFESPRIDTKNTHGTGCTLSSAIAANLAK-GLSLEEAVREA 231 (242)
T ss_pred HHHHHHHHhcCCCEEEEecCC-CCCCceeEEEEECCcEEEEecceeCCCCCCChHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 888999999999999999997 43 2333321 268899999999999999998 99999999999
Q ss_pred HHHHHHHHHH
Q 022988 239 VSSLQALLQR 248 (289)
Q Consensus 239 ~a~a~~~l~~ 248 (289)
+++.+++++.
T Consensus 232 ~~~~~~~i~~ 241 (242)
T cd01169 232 KEYVTQAIRN 241 (242)
T ss_pred HHHHHHHHHc
Confidence 9999988864
No 16
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=100.00 E-value=4.1e-32 Score=238.38 Aligned_cols=225 Identities=31% Similarity=0.427 Sum_probs=175.8
Q ss_pred CccCccchhhcHHHHHhCCCcceeeceEE-eecCCCCCCcceeeCCHHHHHHHHHHHHhCCCcccCEEEEeecCCHhHHH
Q 022988 24 TVQGYVGNKSAVFPLQLLGYDVDPIHSVQ-FSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLN 102 (289)
Q Consensus 24 ~~~G~vG~~~~~~~l~~~Gv~~~~v~~~~-~~~~tg~~~i~g~~l~~~~~~~~~~~l~~~~~~~~~~v~~G~l~~~~~~~ 102 (289)
|++|++|..+++++++++|+.+..++|.. .+++.++.. ...++.+.+..+++.+.+.. ++++|++|++++.+..+
T Consensus 1 DpsggaGi~aDi~t~~a~G~~~~~v~Talt~qn~~~~~~--~~~~~~~~~~~ql~~~~~~~--~~~aikiG~l~~~~~v~ 76 (246)
T PF08543_consen 1 DPSGGAGIQADIKTISALGVHGCPVPTALTSQNTYGVFD--IEPVDSEMIKAQLDALLEDM--KFDAIKIGYLGSAEQVE 76 (246)
T ss_dssp ETTSSSHHHHHHHHHHHTTEEEEEEEEEEEEEETTEEEE--EEE--HHHHHHHHHHHHHTS--C-SEEEE-S-SSHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCccceEeEEEEecCCcceEE--EEECCHHHHHHHHHHhcccc--cccEEEEcccCCchhhh
Confidence 57899999999999999999998887654 345444433 36788889999998887642 68999999999999898
Q ss_pred HHHHHHHHHHhcCCCceEEEccccccCC-CccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhCCCCCCHHHHHHHHHHH
Q 022988 103 TILQVVEKLRSINPNLIYVCDPVMGDEG-KLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKIL 181 (289)
Q Consensus 103 ~~~~~l~~~k~~~~~~~vv~Dp~~~~~g-~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g~~~~~~~~~~~a~~~L 181 (289)
.+.++++. . +.++|+||++++++ ..+.+++..+.++++|+|++|+|+||..|++.|+|.++.+.+++.+++++|
T Consensus 77 ~i~~~l~~---~--~~~vV~DPVm~~~~g~~~~~~~~~~~~~~~Llp~AdiitPN~~Ea~~L~g~~i~~~~~~~~~~~~l 151 (246)
T PF08543_consen 77 IIADFLKK---P--KIPVVLDPVMGDSGGYYYVDPDVVEAMREELLPLADIITPNLTEAELLTGREINSEEDIEEAAKAL 151 (246)
T ss_dssp HHHHHHHH---T--TTEEEEE---EETTTECTSSHHHHHHHHHHCGGG-SEEE-BHHHHHHHHTS--SSHHHHHHHHHHH
T ss_pred hHHHHHhc---c--CCCEEEecccccCCCCcCCCHHHHHHHHhccCCcCeEEeCCHHHHHHHhCCCCCChHhHHHHHHHH
Confidence 88887743 2 66999999999644 455788999999988999999999999999999999999999999999999
Q ss_pred HhcCCCeEEEeeeec--CC----cEEEecc----------c-CCCCCchHHHHHHHHHHHccCCCCHHHHHHHHHHHHHH
Q 022988 182 HAAGPAKVVITSINI--DG----NLFLIGS----------H-QKEKGTGDLMTALLLGWSNKYRDNLDIAAELAVSSLQA 244 (289)
Q Consensus 182 ~~~g~~~Vvvt~g~~--~G----~~~~~~~----------~-~dt~GAGD~f~g~l~~~l~~~g~~~~~A~~~A~a~a~~ 244 (289)
+++|++.|+||+++. +. .+++..+ + .+.+|+||+|+++|+++|++ |+++++|++.|..+.+.
T Consensus 152 ~~~G~~~VvItg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~GTGd~fss~laa~l~~-g~~l~~Av~~A~~~v~~ 230 (246)
T PF08543_consen 152 LALGPKNVVITGGHLDGDEGIITDVLYDGGEFYWLSSPRIPTGSFHGTGDLFSSALAAFLAK-GYSLEEAVEKAKNFVRR 230 (246)
T ss_dssp HHTS-SEEEEEEEEGGSSCEEEEEEEETTSEEEEEEEEEECTSGCTTHHHHHHHHHHHHHHT-TSSHHHHHHHHHHHHHH
T ss_pred HHhCCceEEEeeeccccccccccceeeeccceeecceeEEcCCCCCCchhHHHHHHHHHHHc-CCCHHHHHHHHHHHHHH
Confidence 999999999999984 11 1222221 2 46789999999999999998 99999999999999999
Q ss_pred HHHHHHHhhhhcCC
Q 022988 245 LLQRTVNDYVTAGF 258 (289)
Q Consensus 245 ~l~~~~~~~~~~~~ 258 (289)
+++++.+.+.+.|+
T Consensus 231 ~i~~t~~~g~~~~~ 244 (246)
T PF08543_consen 231 AIKNTIQLGMGAGP 244 (246)
T ss_dssp HHHHHHHCTSSS-B
T ss_pred HHHHHhcCCCCCCC
Confidence 99999987666664
No 17
>PTZ00493 phosphomethylpyrimidine kinase; Provisional
Probab=100.00 E-value=2.3e-31 Score=239.02 Aligned_cols=239 Identities=17% Similarity=0.242 Sum_probs=191.5
Q ss_pred CCCCCeEEEEeccCccCccchhhcHHHHHhCCCcc-eeeceEEeecCCCCCCcceeeCCHHHHHHHHHHHHhCCCcccCE
Q 022988 11 PSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDV-DPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTH 89 (289)
Q Consensus 11 ~~~~~~vl~i~g~~~~G~vG~~~~~~~l~~~Gv~~-~~v~~~~~~~~tg~~~i~g~~l~~~~~~~~~~~l~~~~~~~~~~ 89 (289)
+..+++||+|+|+|+.|++|..++++++.++|+.. ..++..+.||+.|+..+ ..++++.+.++++.+.+.. .+++
T Consensus 1 ~~~~p~VLtIAGsDpsGGAGiqADlkt~~alGv~g~sviTalTaQnt~~V~~v--~~v~~~~i~~Ql~all~D~--~i~a 76 (321)
T PTZ00493 1 MEGVSNILSIAGSDSCGGAGMQADIKTAMGLGCHCCTALVVLTAQNTKEVKRI--VEIEEKFIVEQLDSIFADV--TIDV 76 (321)
T ss_pred CCCCCEEEEEeeeCCCCchHHHHHHHHHHHcCCccceEEEEEEEEcCCceEEE--EECCHHHHHHHHHHHHhCC--CCCE
Confidence 35788999999999999999999999999999754 55666777788776543 6788889998888887643 4889
Q ss_pred EEEeecCCHhHHHHHHHHHHHHHhcCC-CceEEEccccc-cCCCccCC-hhHHHHHHHhhcCCceEEcCCHHHHHHhhC-
Q 022988 90 LLTGYIGSVSFLNTILQVVEKLRSINP-NLIYVCDPVMG-DEGKLYVP-SELVSVYREKVVPVASMLTPNQFEAEQLTG- 165 (289)
Q Consensus 90 v~~G~l~~~~~~~~~~~~l~~~k~~~~-~~~vv~Dp~~~-~~g~~~~~-~~~~~~l~~~ll~~~dii~pN~~E~~~L~g- 165 (289)
|++|++++.+..+.+.++++...+.++ ..++|+||++. .+|..+.+ ++..+.+++.|+|++++||||..|++.|+|
T Consensus 77 IKiGmL~s~e~i~~v~~~l~~~~~~~~~~~~vVlDPVl~sssG~~L~~~~~~~~~~~~~Llp~a~viTPN~~Ea~~L~g~ 156 (321)
T PTZ00493 77 VKLGVLYSKKIISLVHNYITNMNKKRGKKLLVVFDPVFVSSSGCLLVENLEYIKFALDLICPISCIITPNFYECKVILEA 156 (321)
T ss_pred EEECCcCCHHHHHHHHHHHHHhcccccCCCeEEECCceEECCCCccCCcHHHHHHHHHHhhccCEEECCCHHHHHHHhCC
Confidence 999999999999999888876631101 22599999998 46666666 477777877899999999999999999998
Q ss_pred ----CCCCCHHHHHHHHHHHHh-cCCCeEEEeeeecCC-----c------EEEe----------------c---------
Q 022988 166 ----FRIGSEADGREACKILHA-AGPAKVVITSINIDG-----N------LFLI----------------G--------- 204 (289)
Q Consensus 166 ----~~~~~~~~~~~a~~~L~~-~g~~~Vvvt~g~~~G-----~------~~~~----------------~--------- 204 (289)
.+. +.+++++++++|++ +|++.|+||+|+.++ . +++. +
T Consensus 157 ~~~~~~~-~~~~~~~aA~~l~~~~G~~~VliKGGh~~~~~~~~~~~~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (321)
T PTZ00493 157 LDCQMDL-SKANMTELCKLVTEKLNINACLFKSCNVGENSAEENEVYAVDHLCIRNVGSYPTGEKQQIDAGGVTYLYDVY 235 (321)
T ss_pred CcccCCC-CHHHHHHHHHHHHHhcCCCEEEECcCCCcccccccccccceeEEecCCccccccccccccccccccccceEE
Confidence 332 46788999999986 699999999987421 1 2211 0
Q ss_pred ----cc---CCCCCchHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022988 205 ----SH---QKEKGTGDLMTALLLGWSNKYRDNLDIAAELAVSSLQALLQRTVNDYVT 255 (289)
Q Consensus 205 ----~~---~dt~GAGD~f~g~l~~~l~~~g~~~~~A~~~A~a~a~~~l~~~~~~~~~ 255 (289)
.+ .+++|+||+|+++++++|++ |.++++|++.|..+.+.+++.+.+.+.+
T Consensus 236 ~~~~~ri~~~~~hGTGc~fASAIAa~LA~-G~~l~~Av~~A~~fv~~aI~~s~~~g~g 292 (321)
T PTZ00493 236 KLRSKRKPGKDIHGTGCTLSTAIACYLAK-KHNILQSCIESKKYIYNCIRYAYPFGSK 292 (321)
T ss_pred EEEecccCCCCCCChHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 01 34689999999999999999 9999999999999999999999775443
No 18
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=99.98 E-value=7.7e-31 Score=252.17 Aligned_cols=226 Identities=22% Similarity=0.354 Sum_probs=184.7
Q ss_pred CCCeEEEEeccCccCccchhhcHHHHHhCCCcc-eeeceEEeecCCCCCCcceeeCCHHHHHHHHHHHHhCCCcccCEEE
Q 022988 13 ETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDV-DPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLL 91 (289)
Q Consensus 13 ~~~~vl~i~g~~~~G~vG~~~~~~~l~~~Gv~~-~~v~~~~~~~~tg~~~i~g~~l~~~~~~~~~~~l~~~~~~~~~~v~ 91 (289)
++++||+|+|+|++|++|+.+++++++++|+.. ..++++++||++|+..+ ..++++.+..+++.+.+.. .+++|+
T Consensus 229 ~~~~vLtIag~D~sggaGi~aDi~t~~~lg~~~~~~vta~t~qn~~~~~~~--~~~~~~~~~~ql~~l~~d~--~~~~Ik 304 (504)
T PTZ00347 229 KIPTVLTVSGSDSGGGAGHQADLKTLEALGVYSTSALTSLTAQNTKGVQQI--QVVNEDFFAAQIDSVMSDF--NISVVK 304 (504)
T ss_pred CCCeEEEEeCcCCCChHHHHHHHHHHHHcCCcccchheeEEeEcCcceeeE--EeCCHHHHHHHHHHHHhCC--CCCEEE
Confidence 467999999999999999999999999999987 57788888999987654 6788899999888887654 478999
Q ss_pred EeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccc-cCCCccCC----hhHHHHHHHhhcCCceEEcCCHHHHHHhhCC
Q 022988 92 TGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG-DEGKLYVP----SELVSVYREKVVPVASMLTPNQFEAEQLTGF 166 (289)
Q Consensus 92 ~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~-~~g~~~~~----~~~~~~l~~~ll~~~dii~pN~~E~~~L~g~ 166 (289)
+|++++.+..+.+.+.+ + +.++|+||+++ .+|..+.. ++.++.+++.+++.+|+|+||..|++.|+|.
T Consensus 305 ~G~l~s~e~i~~i~~~l---~----~~~vV~DPV~~~~~G~~l~~~~~~~~~~~~~~~~Ll~~advitPN~~Ea~~L~g~ 377 (504)
T PTZ00347 305 LGLVPTARQLEIVIEKL---K----NLPMVVDPVLVATSGDDLVAQKNADDVLAMYKERIFPMATIITPNIPEAERILGR 377 (504)
T ss_pred ECCcCCHHHHHHHHHHh---c----CCCEEEcccceeCCCCcccchhHHHHHHHHHHHhccCcceEEeCCHHHHHHHhCC
Confidence 99999976666655544 3 45899999997 34543332 3335556656899999999999999999997
Q ss_pred C-CCCHHHHHHHHHHHHhcCCCeEEEeeeecCC-------cEEEec--c-----------cCCCCCchHHHHHHHHHHHc
Q 022988 167 R-IGSEADGREACKILHAAGPAKVVITSINIDG-------NLFLIG--S-----------HQKEKGTGDLMTALLLGWSN 225 (289)
Q Consensus 167 ~-~~~~~~~~~a~~~L~~~g~~~Vvvt~g~~~G-------~~~~~~--~-----------~~dt~GAGD~f~g~l~~~l~ 225 (289)
+ ..+.+++.++++.|.++|++.|+||+|+ +| .+++.. . .++++||||+|+|+|+++++
T Consensus 378 ~~~~~~~~~~~aa~~l~~~G~~~VvVtgg~-~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~GaGD~fsaaiaa~la 456 (504)
T PTZ00347 378 KEITGVYEARAAAQALAQYGSRYVLVKGGH-DLIDPEACRDVLYDREKDRFYEFTANRIATINTHGTGCTLASAISSFLA 456 (504)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEeCCC-CCcCCCcceEEEEcCCCCeEEEEEeeeECCCCCCChHHHHHHHHHHHHh
Confidence 4 6677788899999999999999999997 31 222221 1 26789999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHH
Q 022988 226 KYRDNLDIAAELAVSSLQALLQRTVN 251 (289)
Q Consensus 226 ~~g~~~~~A~~~A~a~a~~~l~~~~~ 251 (289)
+ |.++++|+++|.++.+.+++.+.+
T Consensus 457 ~-G~~l~eAv~~A~~~v~~~i~~~~~ 481 (504)
T PTZ00347 457 R-GYTVPDAVERAIGYVHEAIVRSCG 481 (504)
T ss_pred C-CCCHHHHHHHHHHHHHHHHHhcCc
Confidence 8 999999999999999999999864
No 19
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=99.97 E-value=9.9e-30 Score=240.91 Aligned_cols=236 Identities=21% Similarity=0.217 Sum_probs=182.1
Q ss_pred CCeEEEEeccCccCccchhhcHHHHHhCCCcceeece-EEeecCCCCCCcceeeCCHHHHHHHHHHHHhCCCcccCEEEE
Q 022988 14 TGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHS-VQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLT 92 (289)
Q Consensus 14 ~~~vl~i~g~~~~G~vG~~~~~~~l~~~Gv~~~~v~~-~~~~~~tg~~~i~g~~l~~~~~~~~~~~l~~~~~~~~~~v~~ 92 (289)
.+.||+|+|+|+.|++|..+++++++++|+....++| .+.|++.+...+ ..++++.++..++.+.+.. .++++++
T Consensus 2 ~~~vltiaG~D~~ggaGi~aDi~t~~alg~~~~~v~Ta~t~Qnt~~~~~i--~~~~~~~~~~q~~a~~~d~--~~~~ik~ 77 (448)
T PRK08573 2 IPVALTIAGSDSGGGAGIEADLKTFAALGVHGAVAITSVTAQNTYEVRAI--HDLPPEVVAAQIEAVWEDM--GIDAAKT 77 (448)
T ss_pred CCEEEEEeeeCCCCHHHHHHHHHHHHHcCCeecccceEEEeecCCCceEE--EECCHHHHHHHHHHHHhcC--CCCEEEE
Confidence 3589999999999999999999999999998877655 455565554333 4566655555555543322 2678999
Q ss_pred eecCCHhHHHHHHHHHHHHHhcCCCceEEEcccccc-CCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhCCCCCCH
Q 022988 93 GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD-EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSE 171 (289)
Q Consensus 93 G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~-~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g~~~~~~ 171 (289)
|++++. +.+..+++.+++. +++++|||+++. +|..+..++..+.+.+.+++++|+++||+.|++.|+|.++.+.
T Consensus 78 G~l~~~---e~~~~i~~~~k~~--g~~vv~DPv~~~~sG~~l~~~~~~~~l~~~llp~adli~pN~~Ea~~L~g~~i~~~ 152 (448)
T PRK08573 78 GMLSNR---EIIEAVAKTVSKY--GFPLVVDPVMIAKSGAPLLREDAVDALIKRLLPLATVVTPNRPEAEKLTGMKIRSV 152 (448)
T ss_pred CCcCCH---HHHHHHHHHHHHc--CCCEEEcCccccCCCCcCCCHHHHHHHHHhhhccCEEEcCCHHHHHHHhCCCCCCH
Confidence 998864 5566677777776 889999999984 5554445566666655689999999999999999999888888
Q ss_pred HHHHHHHHHHHh-cCCCeEEEeeeec---CCc-EEEecc-----------cCCCCCchHHHHHHHHHHHccCCCCHHHHH
Q 022988 172 ADGREACKILHA-AGPAKVVITSINI---DGN-LFLIGS-----------HQKEKGTGDLMTALLLGWSNKYRDNLDIAA 235 (289)
Q Consensus 172 ~~~~~a~~~L~~-~g~~~Vvvt~g~~---~G~-~~~~~~-----------~~dt~GAGD~f~g~l~~~l~~~g~~~~~A~ 235 (289)
++..++++.|++ +|++.|+||+|+. +|. +++..+ .+|++||||+|+|+|++++++ |+++++|+
T Consensus 153 ~d~~~aa~~L~~~~G~~~VvVt~G~~~g~~~~~~~~~~~~~~~~~~~~v~~~dt~GAGDaFsAa~aa~l~~-G~~l~eAl 231 (448)
T PRK08573 153 EDARKAAKYIVEELGAEAVVVKGGHLEGEEAVDVLYHNGTFREFRAPRVESGCTHGTGCSFSAAIAAGLAK-GLDPEEAI 231 (448)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecccCCCCceeEEEEECCeEEEEEecCcCCCCCCChHHHHHHHHHHHHHc-CCCHHHHH
Confidence 889999999984 7999999999852 232 222221 167999999999999999998 99999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCC
Q 022988 236 ELAVSSLQALLQRTVNDYVTAGFD 259 (289)
Q Consensus 236 ~~A~a~a~~~l~~~~~~~~~~~~~ 259 (289)
++|+.++..+++.+...+.+++..
T Consensus 232 ~~A~~~~~~al~~~~~~g~g~~~~ 255 (448)
T PRK08573 232 KTAKKFITMAIKYGVKIGKGHCPV 255 (448)
T ss_pred HHHHHHHHHHHHHhhccCCCCCCc
Confidence 999999999999886654444433
No 20
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=99.97 E-value=2e-29 Score=222.14 Aligned_cols=226 Identities=20% Similarity=0.219 Sum_probs=175.8
Q ss_pred CCeEEEEeccCccCccchhhcHHHHHhCCCcceee-ceEEeecCCCCCCcceeeCCHHHHHHHHHHHHhCCCcccCEEEE
Q 022988 14 TGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPI-HSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLT 92 (289)
Q Consensus 14 ~~~vl~i~g~~~~G~vG~~~~~~~l~~~Gv~~~~v-~~~~~~~~tg~~~i~g~~l~~~~~~~~~~~l~~~~~~~~~~v~~ 92 (289)
.+.||+|+|+|+.|++|..++++++..+|+....+ +..+.++..|. . ....+.+.+...++.+.. .++.++++
T Consensus 3 ~~~vl~iag~d~~ggaG~~aD~~~~~~~~~~~~~~~t~~t~~~~~G~-~--v~~~~~~~l~~~l~~l~~---~~~~~i~~ 76 (253)
T PRK12413 3 TNYILAISGNDIFSGGGLHADLATYTRNGLHGFVAVTCLTAMTEKGF-E--VFPVDKEIFQQQLDSLKD---VPFSAIKI 76 (253)
T ss_pred CCeEEEEeeeCCCCHHHHHHHHHHHHHcCCccCeeeEEEecccCCce-E--EEECCHHHHHHHHHHhhC---CCCCEEEE
Confidence 35789999999999999999999999999865544 33444455563 2 245667777777776632 24678899
Q ss_pred eecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCc-cCChhHHHHHHHhhcCCceEEcCCHHHHHHhhCCCCCCH
Q 022988 93 GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKL-YVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSE 171 (289)
Q Consensus 93 G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~-~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g~~~~~~ 171 (289)
|++++....+.+.++++. . ++++++|||++++..+. ...++..+.++ .+++++|+++||+.|++.|+|.+..+.
T Consensus 77 G~l~~~~~~~~~~~~~~~--~--~~~~vv~DPv~~~~~~~~~~~~~~~~~l~-~ll~~~dli~pN~~E~~~L~g~~~~~~ 151 (253)
T PRK12413 77 GLLPNVEIAEQALDFIKG--H--PGIPVVLDPVLVCKETHDVEVSELRQELI-QFFPYVTVITPNLVEAELLSGKEIKTL 151 (253)
T ss_pred CCcCCHHHHHHHHHHHHh--C--CCCCEEEcCceecCCCCccccHHHHHHHH-HHhccCcEECCCHHHHHHHhCcCCCCH
Confidence 999876555555555543 2 38899999999865321 13455556665 488999999999999999999888888
Q ss_pred HHHHHHHHHHHhcCCCeEEEeeeecCC----c--EEEecc----------cCCCCCchHHHHHHHHHHHccCCCCHHHHH
Q 022988 172 ADGREACKILHAAGPAKVVITSINIDG----N--LFLIGS----------HQKEKGTGDLMTALLLGWSNKYRDNLDIAA 235 (289)
Q Consensus 172 ~~~~~a~~~L~~~g~~~Vvvt~g~~~G----~--~~~~~~----------~~dt~GAGD~f~g~l~~~l~~~g~~~~~A~ 235 (289)
+++.++++.|+++|++.|++|+|+ +| . ++..+. .++++||||+|+|+|+++|++ |+++++|+
T Consensus 152 ~~~~~~a~~l~~~g~~~Vvvt~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaGDaf~a~~~~~l~~-g~~l~ea~ 229 (253)
T PRK12413 152 EDMKEAAKKLYDLGAKAVVIKGGN-RLSQKKAIDLFYDGKEFVILESPVLEKNNIGAGCTFASSIASQLVK-GKSPLEAV 229 (253)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCC-CCCCCcceEEEEcCCEEEEEeecccCCCCCChHHHHHHHHHHHHHc-CCCHHHHH
Confidence 889999999999999999999986 42 1 222221 268999999999999999998 99999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 022988 236 ELAVSSLQALLQRTVND 252 (289)
Q Consensus 236 ~~A~a~a~~~l~~~~~~ 252 (289)
++|.++.+++++.+...
T Consensus 230 ~~A~~~~~~~l~~~~~~ 246 (253)
T PRK12413 230 KNSKDFVYQAIQQSDQY 246 (253)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999998775
No 21
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=99.97 E-value=1.1e-29 Score=244.10 Aligned_cols=237 Identities=20% Similarity=0.270 Sum_probs=185.1
Q ss_pred cCCCCC--CeEEEEeccCccCccchhhcHHHHHhCCCcceeeceE-EeecCCCCCCcceeeCCHHHHHHHHHHHHhCCCc
Q 022988 9 ALPSET--GRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSV-QFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLL 85 (289)
Q Consensus 9 ~~~~~~--~~vl~i~g~~~~G~vG~~~~~~~l~~~Gv~~~~v~~~-~~~~~tg~~~i~g~~l~~~~~~~~~~~l~~~~~~ 85 (289)
|..|+| ++||+|+|+|++|++|..++++++.++|+....++|. +.+++.++..+ ..++++.+..+++.+.+..
T Consensus 2 ~~~~~~~~~~vL~IaGsD~~gGAGi~aDl~t~~a~G~~~~~v~Talt~q~t~~v~~~--~~~~~~~~~~ql~~~~~d~-- 77 (502)
T PLN02898 2 GTESPMKVPHVLTVAGSDSGAGAGIQADIKACAARGVYCTTAITAVTAQNTVGVQGV--HAVPLDFVAEQLKSVLSDM-- 77 (502)
T ss_pred CcCCCCCCCeEEEEeeeCCCcHHHHHHHHHHHHHcCCEecceeeEEEEEcCCcccee--eeCCHHHHHHHHHHHHhCC--
Confidence 344444 7899999999999999999999999999988776554 44555565433 4567666666666665432
Q ss_pred ccCEEEEeecCCHhHHHHHHHHHHHHHhcCCCc-eEEEccccc-cCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHh
Q 022988 86 YYTHLLTGYIGSVSFLNTILQVVEKLRSINPNL-IYVCDPVMG-DEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQL 163 (289)
Q Consensus 86 ~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~-~vv~Dp~~~-~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L 163 (289)
.+++|++|++++.+..+.+.+.+ ++. +. ++|+||++. ++|..|.+++..+.+++.+++++|++|||..|++.|
T Consensus 78 ~~~aik~G~l~~~~~i~~i~~~l---~~~--~~~~vVlDPV~~~~~G~~l~~~~~~~~l~~~Ll~~adiitPN~~Ea~~L 152 (502)
T PLN02898 78 PVDVVKTGMLPSAEIVKVLCQAL---KEF--PVKALVVDPVMVSTSGDVLAGPSILSALREELLPLATIVTPNVKEASAL 152 (502)
T ss_pred CCCEEEECCcCCHHHHHHHHHHH---HhC--CCCCEEEccccccCCCCccCCHHHHHHHHHhhhccCeEEcCCHHHHHHH
Confidence 48899999999866555555444 443 44 599999996 577777888888888767899999999999999999
Q ss_pred hCCC-CCCHHHHHHHHHHHHhcCCCeEEEeeeecC-----CcEEEecc-----------cCCCCCchHHHHHHHHHHHcc
Q 022988 164 TGFR-IGSEADGREACKILHAAGPAKVVITSINID-----GNLFLIGS-----------HQKEKGTGDLMTALLLGWSNK 226 (289)
Q Consensus 164 ~g~~-~~~~~~~~~a~~~L~~~g~~~Vvvt~g~~~-----G~~~~~~~-----------~~dt~GAGD~f~g~l~~~l~~ 226 (289)
+|.+ ..+.+++.+++++|.++|++.|+||+|+.. +.+++.++ ..+++||||+|+|+|++++++
T Consensus 153 ~g~~~~~~~~~~~~~a~~l~~~G~~~VvItgg~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~t~GaGD~fsaaiaa~l~~ 232 (502)
T PLN02898 153 LGGDPLETVADMRSAAKELHKLGPRYVLVKGGHLPDSLDAVDVLYDGTEFHELRSSRIKTRNTHGTGCTLASCIAAELAK 232 (502)
T ss_pred hCCCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCcceEEEEcCCeEEEEecceeCCCCCCchhhhHHHHHHHHHHc
Confidence 9853 556778889999999999999999998621 12333221 157899999999999999998
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022988 227 YRDNLDIAAELAVSSLQALLQRTVNDYVT 255 (289)
Q Consensus 227 ~g~~~~~A~~~A~a~a~~~l~~~~~~~~~ 255 (289)
|+++++|+++|..+++.+++++.....+
T Consensus 233 -G~~l~eAv~~A~~~v~~ai~~~~~~~~~ 260 (502)
T PLN02898 233 -GSDMLSAVKVAKRYVETALEYSKDIGIG 260 (502)
T ss_pred -CCCHHHHHHHHHHHHHHHHHhhhccCCC
Confidence 9999999999999999999998654433
No 22
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=99.97 E-value=1.6e-29 Score=244.16 Aligned_cols=231 Identities=19% Similarity=0.232 Sum_probs=185.8
Q ss_pred CCCCCCeEEEEeccCccCccchhhcHHHHHhCCCcceeece-EEeecCCCCCCcceeeCCHHHHHHHHHHHHhCCCcccC
Q 022988 10 LPSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHS-VQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYT 88 (289)
Q Consensus 10 ~~~~~~~vl~i~g~~~~G~vG~~~~~~~l~~~Gv~~~~v~~-~~~~~~tg~~~i~g~~l~~~~~~~~~~~l~~~~~~~~~ 88 (289)
.+..+++||+|+|+|++|++|+.+++++++++|+....++| ++.+++.|+..+ ..++++.+..+++.+.+.. +++
T Consensus 25 ~~~~~~~vl~Iag~D~sGgaGi~aDl~t~~a~g~~~~~v~Talt~q~t~~v~~v--~~~~~~~i~~ql~~l~~d~--~~~ 100 (530)
T PRK14713 25 SAAATPRVLSIAGTDPSGGAGIQADLKSIAAAGGYGMAVITALVAQNTRGVRAV--HVPPADFLRAQLDAVSDDV--TVD 100 (530)
T ss_pred CCCCCCeEEEEeCcCCCcHHHHHHHHHHHHHcCCeecchhheEeeecCcceeee--ccCCHHHHHHHHHHHHhCC--CCC
Confidence 34567889999999999999999999999999998877655 444555465433 4677788888887777632 588
Q ss_pred EEEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccc-cCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhCCC
Q 022988 89 HLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG-DEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFR 167 (289)
Q Consensus 89 ~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~-~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g~~ 167 (289)
+|++|++++.+..+.+.++++..+ ..+||+||+++ ++|..+.+++..+.+++ +++++|+|+||..|++.|+|.+
T Consensus 101 aikiG~l~s~~~i~~v~~~l~~~~----~~~vVlDPv~~~~~G~~l~~~~~~~~~~~-Ll~~advItPN~~Ea~~Ltg~~ 175 (530)
T PRK14713 101 AVKIGMLGDAEVIDAVRTWLAEHR----PPVVVLDPVMVATSGDRLLEEDAEAALRE-LVPRADLITPNLPELAVLLGEP 175 (530)
T ss_pred EEEECCcCCHHHHHHHHHHHHhCC----CCCEEECCcccCCCCCCCCCHHHHHHHHH-HhhhhheecCChHHHHHHhCCC
Confidence 999999999888898888887653 33699999996 56655567788888876 9999999999999999999976
Q ss_pred C-CCHHHHHHHHHHHHhcCCCeEEEeeeecC--C--cEEEe-cc-----------cCCCCCchHHHHHHHHHHHccCCCC
Q 022988 168 I-GSEADGREACKILHAAGPAKVVITSINID--G--NLFLI-GS-----------HQKEKGTGDLMTALLLGWSNKYRDN 230 (289)
Q Consensus 168 ~-~~~~~~~~a~~~L~~~g~~~Vvvt~g~~~--G--~~~~~-~~-----------~~dt~GAGD~f~g~l~~~l~~~g~~ 230 (289)
. .+.+++.+++++|.+.+...||||+|+.. + .+++. ++ .++++|+||+|+|+|+++|++ |.+
T Consensus 176 ~~~~~~d~~~aa~~L~~~~g~~VvItgG~~~~~~~~d~~~~~~~~~~~~~~~~v~~~~t~GaGD~fsaalaa~La~-G~~ 254 (530)
T PRK14713 176 PATTWEEALAQARRLAAETGTTVLVKGGHLDGQRAPDALVGPDGAVTEVPGPRVDTRNTHGTGCSLSSALATRLGR-GGD 254 (530)
T ss_pred CCCCHHHHHHHHHHHHHhcCCEEEEeCCCCCCCcceEEEEcCCCeEEEEeeeeeCCCCCCcHHHHHHHHHHHHHHC-CCC
Confidence 5 46678888899998766679999998621 1 22221 11 157899999999999999998 999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022988 231 LDIAAELAVSSLQALLQRTV 250 (289)
Q Consensus 231 ~~~A~~~A~a~a~~~l~~~~ 250 (289)
+++|+++|.++.+.+++.+.
T Consensus 255 l~eAv~~A~~~v~~~i~~a~ 274 (530)
T PRK14713 255 WAAALRWATAWLHGAIAAGA 274 (530)
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999998874
No 23
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=99.97 E-value=5e-29 Score=248.92 Aligned_cols=232 Identities=18% Similarity=0.159 Sum_probs=186.0
Q ss_pred cCCCCCCeEEEEeccCccCccchhhcHHHHHhCCCcc-eeeceEEeecCCCCCCcceeeCCHHHHHHHHHHHHhCCCccc
Q 022988 9 ALPSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDV-DPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYY 87 (289)
Q Consensus 9 ~~~~~~~~vl~i~g~~~~G~vG~~~~~~~l~~~Gv~~-~~v~~~~~~~~tg~~~i~g~~l~~~~~~~~~~~l~~~~~~~~ 87 (289)
+....++.||+|+|+|++|++|..+++++++++|+.. ..++..+.||+.|+..+ ..++++.+..+++.+.+.. .+
T Consensus 236 ~~~~~~~~vLtIaGsD~sggAGi~aDlkt~~alg~~~~~viTaltaQn~~~v~~v--~~~~~~~v~~Ql~~~~~d~--~~ 311 (755)
T PRK09517 236 VNSPSAPRVLSIAGTDPTGGAGIQADLKSIAAGGGYGMCVVTALVAQNTHGVNTI--HTPPLTFLEEQLEAVFSDV--TV 311 (755)
T ss_pred cccCCCCeEEEEeccCCCcHHHHHHHHHHHHHcCCcccchheeEeeEcccceeEE--eeCCHHHHHHHHHHHHcCC--CC
Confidence 4566778999999999999999999999999999855 45566777888776543 6788888888888887643 48
Q ss_pred CEEEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccc-cCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhCC
Q 022988 88 THLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG-DEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGF 166 (289)
Q Consensus 88 ~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~-~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g~ 166 (289)
++|++|++++.+..+.+.+.+++. ++.++|+||+++ .+|..+.+++..+.+++ +++++|+|+||..|++.|+|.
T Consensus 312 ~aiKiGmL~s~e~v~~i~~~l~~~----~~~~vVlDPV~~~~sG~~l~~~~~~~~l~~-Llp~adlItPN~~Ea~~L~g~ 386 (755)
T PRK09517 312 DAVKLGMLGSADTVDLVASWLGSH----EHGPVVLDPVMVATSGDRLLDADATEALRR-LAVHVDVVTPNIPELAVLCGE 386 (755)
T ss_pred CEEEECCCCCHHHHHHHHHHHHhC----CCCCEEEecccccCCCCCCCCHHHHHHHHH-HhCcccCccCCHHHHHHHhCC
Confidence 899999999876666666555433 256799999997 45666567777777775 999999999999999999995
Q ss_pred C-CCCHHHHHHHHHHHHhcCCCeEEEeeeec-----CCcEEEecc-----------cCCCCCchHHHHHHHHHHHccCCC
Q 022988 167 R-IGSEADGREACKILHAAGPAKVVITSINI-----DGNLFLIGS-----------HQKEKGTGDLMTALLLGWSNKYRD 229 (289)
Q Consensus 167 ~-~~~~~~~~~a~~~L~~~g~~~Vvvt~g~~-----~G~~~~~~~-----------~~dt~GAGD~f~g~l~~~l~~~g~ 229 (289)
. ..+.+++.++++.|.+.+...||||+|+. .+.++..++ .++++|+||+|+|+|+++|++ |+
T Consensus 387 ~~~~~~~d~~~aa~~L~~~~g~~VVVkgGh~~~~~~~~~l~~~~~~~~~~~~~~v~~~~t~GaGDtfsaaiaa~La~-G~ 465 (755)
T PRK09517 387 APAITMDEAIAQARGFARTHGTIVIVKGGHLTGDLADNAVVRPDGSVHQVENPRVNTTNSHGTGCSLSAALATLIAA-GE 465 (755)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCEEEEcCCcCCCCccceEEEeCCCeEEEEeecccCCCCCcChHHHHHHHHHHHHHC-CC
Confidence 3 45677888889999876545899999852 233332221 257899999999999999999 99
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q 022988 230 NLDIAAELAVSSLQALLQRTV 250 (289)
Q Consensus 230 ~~~~A~~~A~a~a~~~l~~~~ 250 (289)
++++|+++|+.+.+.+++++.
T Consensus 466 sl~eAv~~A~~~v~~~i~~a~ 486 (755)
T PRK09517 466 SVEKALEWATRWLNEALRHAD 486 (755)
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999984
No 24
>KOG2598 consensus Phosphomethylpyrimidine kinase [Coenzyme transport and metabolism; Transcription]
Probab=99.97 E-value=4.2e-29 Score=224.59 Aligned_cols=242 Identities=22% Similarity=0.292 Sum_probs=203.2
Q ss_pred CCCeeeccCCCCCCeEEEEeccCccCccchhhcHHHHHhCCC-cceeeceEEeecCCCCCCcceeeCCHHHHHHHHHHHH
Q 022988 2 APPILSLALPSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGY-DVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLE 80 (289)
Q Consensus 2 ~~~~~~~~~~~~~~~vl~i~g~~~~G~vG~~~~~~~l~~~Gv-~~~~v~~~~~~~~tg~~~i~g~~l~~~~~~~~~~~l~ 80 (289)
.||++++......+.+|+|.|+|+.|++|..++++++.++|| ..+.++..+.||+.|+..+ ..++++.++++++..-
T Consensus 11 ~~~~~t~~~~~~lPt~LTIAGSDcSGGAGIqADlKv~TAh~vYgMS~iTaltaQn~~gV~sv--~~lpp~~V~qqidacL 88 (523)
T KOG2598|consen 11 PPPMLTTASNRKLPTVLTIAGSDCSGGAGIQADLKVMTAHGVYGMSVITALTAQNTVGVYSV--HLLPPSFVSQQIDACL 88 (523)
T ss_pred CCchhhhhhhccCCeeEEEecCCCCCcccchhhhhhhhhhccchhhhhhhhhccCCccceee--ccCCHHHHHHHHHHHh
Confidence 589999999999999999999999999999999999999996 6677777776777776554 5677777777665543
Q ss_pred hCCCcccCEEEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccc-cCCCccCChhHHHHHHHhhcCCceEEcCCHHH
Q 022988 81 ANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG-DEGKLYVPSELVSVYREKVVPVASMLTPNQFE 159 (289)
Q Consensus 81 ~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~-~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E 159 (289)
.+ ++|+++++|||++++....+.+.+++.+ -.++|+||++. .+|..+..++.+..+.++++|.+|+++||..|
T Consensus 89 ~D--i~C~VvKTGML~~~~I~~vi~q~l~~~~----~~klVvDPVivatsG~~l~~~divsl~~e~l~P~adiltPNI~E 162 (523)
T KOG2598|consen 89 SD--IKCDVVKTGMLPSPEIVKVIEQSLQKFN----IPKLVVDPVIVATSGSSLAGKDIVSLFIEELLPFADILTPNIPE 162 (523)
T ss_pred hc--CcccEEeecCcCchHHHHHHHHHHHhhc----CcceeecceEEeccCCcccCCccHHHHHHHhhhhHHHhCCChHH
Confidence 32 2599999999999999999999888865 34799999998 57777778889999999999999999999999
Q ss_pred HHHhhCC------CCCCHHHHHHHHHHHHhcCCCeEEEeeeecC------------C----cEEEecc-----------c
Q 022988 160 AEQLTGF------RIGSEADGREACKILHAAGPAKVVITSINID------------G----NLFLIGS-----------H 206 (289)
Q Consensus 160 ~~~L~g~------~~~~~~~~~~a~~~L~~~g~~~Vvvt~g~~~------------G----~~~~~~~-----------~ 206 (289)
+..|++. ++.+..+++..+..+++.|+++|++++|+.. . .+++.+. .
T Consensus 163 a~~Ll~~~~~~~~~i~~v~di~~~~~~ihk~gpk~VlvkGghiP~~~~~~~s~d~~~~~~~DvlydG~~F~~f~~~~~~t 242 (523)
T KOG2598|consen 163 AFILLKKEKREISKIQSVFDIAKDAAKIHKLGPKNVLVKGGHIPFNKNMMTSKDDSDKYTVDVLYDGKEFYIFKSPYLAT 242 (523)
T ss_pred HHHHHhhcccCCcccccHHHHHHHHHHHHhcCcceEEEeCCCcCccccccccCcccCCceEEEEEecceEEEeccccccc
Confidence 9999983 4567889999999999999999999998631 0 1222322 1
Q ss_pred CCCCCchHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 022988 207 QKEKGTGDLMTALLLGWSNKYRDNLDIAAELAVSSLQALLQRTVND 252 (289)
Q Consensus 207 ~dt~GAGD~f~g~l~~~l~~~g~~~~~A~~~A~a~a~~~l~~~~~~ 252 (289)
..++|+||++++++++.|++ |.++.+|++.|..+.+.|++++..-
T Consensus 243 ~~tHGtgCtLaSAIASnLA~-g~sl~qAv~~ai~yvq~Ai~~s~~i 287 (523)
T KOG2598|consen 243 KHTHGTGCTLASAIASNLAR-GYSLLQAVQGAIEYVQNAIAISCDI 287 (523)
T ss_pred ccccCccchHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHHhcCCc
Confidence 46789999999999999998 9999999999999999999998764
No 25
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=99.94 E-value=4.7e-25 Score=195.52 Aligned_cols=212 Identities=22% Similarity=0.223 Sum_probs=167.5
Q ss_pred EEEEeccC--ccCccchhh---cHHHHHhCCCcceeeceEE--------eecCCC-CCCc--ceeeCCHHHHHHHHHHHH
Q 022988 17 VLSIQSHT--VQGYVGNKS---AVFPLQLLGYDVDPIHSVQ--------FSNHTG-YPTF--KGQVLNGQQLCDLIEGLE 80 (289)
Q Consensus 17 vl~i~g~~--~~G~vG~~~---~~~~l~~~Gv~~~~v~~~~--------~~~~tg-~~~i--~g~~l~~~~~~~~~~~l~ 80 (289)
||.-.|.. +.|++|... ....|+..|+...+++... .....+ ...+ .|+.+++++++.+++.+.
T Consensus 45 vL~~lG~~~~a~GflGg~tg~~~~~~l~~~gi~~~fv~v~g~TRinvki~~~~~~~~Tein~~Gp~is~~~~~~~l~~~~ 124 (310)
T COG1105 45 VLKDLGIPVTALGFLGGFTGEFFVALLKDEGIPDAFVEVKGDTRINVKILDEEDGEETEINFPGPEISEAELEQFLEQLK 124 (310)
T ss_pred HHHHcCCCceEEEecCCccHHHHHHHHHhcCCCceEEEccCCCeeeEEEEecCCCcEEEecCCCCCCCHHHHHHHHHHHH
Confidence 44444443 568888655 3344889999888875421 111122 2223 578999999999998888
Q ss_pred h-CCCcccC-EEEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHH
Q 022988 81 A-NNLLYYT-HLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQF 158 (289)
Q Consensus 81 ~-~~~~~~~-~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~ 158 (289)
. .. ..| ++++|++|+..+.+.+.++++.++++ ++++++|. +|.. +...+-..+++|+||.+
T Consensus 125 ~~l~--~~d~VvlsGSlP~g~~~d~y~~li~~~~~~--g~~vilD~----Sg~~---------L~~~L~~~P~lIKPN~~ 187 (310)
T COG1105 125 ALLE--SDDIVVLSGSLPPGVPPDAYAELIRILRQQ--GAKVILDT----SGEA---------LLAALEAKPWLIKPNRE 187 (310)
T ss_pred Hhcc--cCCEEEEeCCCCCCCCHHHHHHHHHHHHhc--CCeEEEEC----ChHH---------HHHHHccCCcEEecCHH
Confidence 7 33 245 68889999999999999999999998 99999998 4421 22223336999999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCCCeEEEeeeecCCcEEEecc-----------cCCCCCchHHHHHHHHHHHccC
Q 022988 159 EAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGS-----------HQKEKGTGDLMTALLLGWSNKY 227 (289)
Q Consensus 159 E~~~L~g~~~~~~~~~~~a~~~L~~~g~~~Vvvt~g~~~G~~~~~~~-----------~~dt~GAGD~f~g~l~~~l~~~ 227 (289)
|++.|+|.+..+.+|+.+++++|+..|+++|+|++|. +|++|+++. .++|+||||+++|+|++++.+
T Consensus 188 EL~~~~g~~~~~~~d~i~~a~~l~~~g~~~ViVSlG~-~Gal~~~~~~~~~a~~p~~~vvstVGAGDs~VAGf~~~~~~- 265 (310)
T COG1105 188 ELEALFGRELTTLEDVIKAARELLAEGIENVIVSLGA-DGALLVTAEGVYFASPPKVQVVSTVGAGDSMVAGFLAGLLK- 265 (310)
T ss_pred HHHHHhCCCCCChHHHHHHHHHHHHCCCCEEEEEecC-cccEEEccCCeEEEeCCCcceecCcCchHHHHHHHHHHHHc-
Confidence 9999999999988899999999999999999999997 999987753 168999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 022988 228 RDNLDIAAELAVSSLQALLQ 247 (289)
Q Consensus 228 g~~~~~A~~~A~a~a~~~l~ 247 (289)
++++++++++|.+++..++.
T Consensus 266 ~~~~e~~l~~avA~g~a~~~ 285 (310)
T COG1105 266 GKSLEEALRFAVACGAAAAS 285 (310)
T ss_pred CCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999766553
No 26
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=99.89 E-value=8.1e-22 Score=176.66 Aligned_cols=199 Identities=25% Similarity=0.319 Sum_probs=143.1
Q ss_pred ccCccchhh----cHHHHHhCCCcceeeceEEeecCCCC----------CCc---ce--eeCCHHHHHHHHHHHHhCCCc
Q 022988 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGY----------PTF---KG--QVLNGQQLCDLIEGLEANNLL 85 (289)
Q Consensus 25 ~~G~vG~~~----~~~~l~~~Gv~~~~v~~~~~~~~tg~----------~~i---~g--~~l~~~~~~~~~~~l~~~~~~ 85 (289)
..|.+|.|. ....|++.||++.++.... ..+|++ ..+ .+ ..+++++++...+.+..
T Consensus 55 ~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~-~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 129 (292)
T cd01174 55 MIGAVGDDAFGDELLENLREEGIDVSYVEVVV-GAPTGTAVITVDESGENRIVVVPGANGELTPADVDAALELIAA---- 129 (292)
T ss_pred EEEEEcCCccHHHHHHHHHHcCCCceEEEEcC-CCCceeEEEEEcCCCceEEEEeCCCCCCCCHHHHHHHHHhccc----
Confidence 356777764 3345899999998874321 112221 111 11 13455666654444443
Q ss_pred ccCEEEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhC
Q 022988 86 YYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTG 165 (289)
Q Consensus 86 ~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g 165 (289)
.+.+.+.. ..+.+.+.++++.+|++ +.++++||.+... . + +.+++++|+++||+.|++.|+|
T Consensus 130 -~~~v~~~~---~~~~~~~~~~~~~a~~~--g~~v~~D~~~~~~--~---------~-~~~~~~~dil~~n~~E~~~l~~ 191 (292)
T cd01174 130 -ADVLLLQL---EIPLETVLAALRAARRA--GVTVILNPAPARP--L---------P-AELLALVDILVPNETEAALLTG 191 (292)
T ss_pred -CCEEEEeC---CCCHHHHHHHHHHHHhc--CCEEEEeCCCcCc--C---------c-HHHHhhCCEEeeCHHHHHHHhC
Confidence 44433321 22356777888899987 8999999965421 0 1 2378899999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEEeeeecCCcEEEecc-----------cCCCCCchHHHHHHHHHHHccCCCCHHHH
Q 022988 166 FRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGS-----------HQKEKGTGDLMTALLLGWSNKYRDNLDIA 234 (289)
Q Consensus 166 ~~~~~~~~~~~a~~~L~~~g~~~Vvvt~g~~~G~~~~~~~-----------~~dt~GAGD~f~g~l~~~l~~~g~~~~~A 234 (289)
.+..+.++++++++.+.+.|++.|++|+|+ +|+++..++ .+||+||||+|+|+|++++.+ |.++++|
T Consensus 192 ~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~-~G~~~~~~~~~~~~~~~~~~~vdt~GaGD~F~ag~l~~l~~-g~~~~~a 269 (292)
T cd01174 192 IEVTDEEDAEKAARLLLAKGVKNVIVTLGA-KGALLASGGEVEHVPAFKVKAVDTTGAGDTFIGALAAALAR-GLSLEEA 269 (292)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEeCC-CceEEEeCCceEEecCCCcccCCCCCcHHHHHHHHHHHHHc-CCCHHHH
Confidence 877666778888999999999999999997 888776432 269999999999999999998 9999999
Q ss_pred HHHHHHHHHHHHHH
Q 022988 235 AELAVSSLQALLQR 248 (289)
Q Consensus 235 ~~~A~a~a~~~l~~ 248 (289)
+++|++++..++++
T Consensus 270 l~~a~~~Aa~~~~~ 283 (292)
T cd01174 270 IRFANAAAALSVTR 283 (292)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999998776654
No 27
>PRK11142 ribokinase; Provisional
Probab=99.88 E-value=7.3e-22 Score=178.29 Aligned_cols=199 Identities=23% Similarity=0.300 Sum_probs=142.6
Q ss_pred ccCccchhh----cHHHHHhCCCcceeeceEEeecCCCC----------CCc---ce--eeCCHHHHHHHHHHHHhCCCc
Q 022988 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGY----------PTF---KG--QVLNGQQLCDLIEGLEANNLL 85 (289)
Q Consensus 25 ~~G~vG~~~----~~~~l~~~Gv~~~~v~~~~~~~~tg~----------~~i---~g--~~l~~~~~~~~~~~l~~~~~~ 85 (289)
++|.+|.|. ....|++.||+++++.... ..+|+. ..+ .+ ..+++++++...+.+..
T Consensus 58 ~~~~vG~D~~g~~i~~~L~~~gV~~~~i~~~~-~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~l~~---- 132 (306)
T PRK11142 58 FIACVGDDSIGESMRQQLAKDGIDTAPVSVIK-GESTGVALIFVNDEGENSIGIHAGANAALTPALVEAHRELIAN---- 132 (306)
T ss_pred EEEEECCChhHHHHHHHHHHcCCChhhEEEcC-CCCCCEEEEEECCCCCEEEEEeCCccccCCHHHHHHHHhhhcc----
Confidence 357778775 3455899999988775432 112321 111 11 24566666655444543
Q ss_pred ccCEEEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhC
Q 022988 86 YYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTG 165 (289)
Q Consensus 86 ~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g 165 (289)
.+.+.+.. ..+.+.+.++++.+|++ ++++++||..... . ...+++++|+++||+.|++.++|
T Consensus 133 -~~~v~~~~---~~~~~~~~~~~~~a~~~--g~~v~~d~~~~~~----~--------~~~~~~~~dil~~n~~Ea~~l~g 194 (306)
T PRK11142 133 -ADALLMQL---ETPLETVLAAAKIAKQH--GTKVILNPAPARE----L--------PDELLALVDIITPNETEAEKLTG 194 (306)
T ss_pred -CCEEEEeC---CCCHHHHHHHHHHHHHc--CCEEEEECCCCcc----c--------CHHHHhhCCEEcCCHHHHHHHhC
Confidence 34443321 12346677888889887 8999999964321 1 12377899999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEEeeeecCCcEEEecc-----------cCCCCCchHHHHHHHHHHHccCCCCHHHH
Q 022988 166 FRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGS-----------HQKEKGTGDLMTALLLGWSNKYRDNLDIA 234 (289)
Q Consensus 166 ~~~~~~~~~~~a~~~L~~~g~~~Vvvt~g~~~G~~~~~~~-----------~~dt~GAGD~f~g~l~~~l~~~g~~~~~A 234 (289)
.+..+.++..++++.+.+.|++.|++|+|+ +|+++..++ .+||+||||+|+|+|++++.+ |+++++|
T Consensus 195 ~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~-~G~~~~~~~~~~~~~~~~v~vvDt~GAGDaF~Agfi~~l~~-g~~~~~a 272 (306)
T PRK11142 195 IRVEDDDDAAKAAQVLHQKGIETVLITLGS-RGVWLSENGEGQRVPGFRVQAVDTIAAGDTFNGALVTALLE-GKPLPEA 272 (306)
T ss_pred CCCCChHHHHHHHHHHHHhCCCeEEEEECC-CcEEEEeCCcceeccCCCcccccCCCchhHHHHHHHHHHHC-CCCHHHH
Confidence 877666778888888888999999999997 898775432 269999999999999999998 9999999
Q ss_pred HHHHHHHHHHHHHH
Q 022988 235 AELAVSSLQALLQR 248 (289)
Q Consensus 235 ~~~A~a~a~~~l~~ 248 (289)
+++|++++...+++
T Consensus 273 l~~a~~~Aa~~~~~ 286 (306)
T PRK11142 273 IRFAHAAAAIAVTR 286 (306)
T ss_pred HHHHHHHHHHHcCC
Confidence 99999986555543
No 28
>PTZ00292 ribokinase; Provisional
Probab=99.88 E-value=1e-21 Score=179.18 Aligned_cols=204 Identities=19% Similarity=0.252 Sum_probs=143.7
Q ss_pred cCccchhh----cHHHHHhCCCcceeeceEEeecCCC-----------CCCc---ce--eeCCHHHHHHHHHHHHhCCCc
Q 022988 26 QGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTG-----------YPTF---KG--QVLNGQQLCDLIEGLEANNLL 85 (289)
Q Consensus 26 ~G~vG~~~----~~~~l~~~Gv~~~~v~~~~~~~~tg-----------~~~i---~g--~~l~~~~~~~~~~~l~~~~~~ 85 (289)
.|.+|+|. ....|++.||+++++.... ..+|+ ...+ .+ ..+++++++.....+...
T Consensus 72 is~vG~D~~g~~i~~~l~~~GI~~~~~~~~~-~~~t~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~i~~~--- 147 (326)
T PTZ00292 72 VGMVGTDGFGSDTIKNFKRNGVNTSFVSRTE-NSSTGLAMIFVDTKTGNNEIVIIPGANNALTPQMVDAQTDNIQNI--- 147 (326)
T ss_pred EEEECCChhHHHHHHHHHHcCCChhhEEEcC-CCCCcEEEEEEeCCCCceEEEEeCCccccCCHHHHHHHHHHhhhh---
Confidence 56777764 3345899999988774321 01222 1111 11 245666766554444430
Q ss_pred ccCEEEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhC
Q 022988 86 YYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTG 165 (289)
Q Consensus 86 ~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g 165 (289)
.+.+++. +..+.+.+.++++.++++ ++++++||+++.. .|. .+.+.+ +++++|+++||+.|++.|+|
T Consensus 148 -~~~~~~~---~~~~~~~~~~~~~~a~~~--g~~v~~D~~~~~~--~~~----~~~~~~-~l~~~dii~~n~~E~~~l~g 214 (326)
T PTZ00292 148 -CKYLICQ---NEIPLETTLDALKEAKER--GCYTVFNPAPAPK--LAE----VEIIKP-FLKYVSLFCVNEVEAALITG 214 (326)
T ss_pred -CCEEEEC---CCCCHHHHHHHHHHHHHc--CCEEEEECCCCcc--ccc----cccHHH-HHhcCCEEcCCHHHHHHHhC
Confidence 3333332 223356667788888877 8999999976532 111 122333 78899999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEEeeeecCCcEEEecc------------cCCCCCchHHHHHHHHHHHccCCCCHHH
Q 022988 166 FRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGS------------HQKEKGTGDLMTALLLGWSNKYRDNLDI 233 (289)
Q Consensus 166 ~~~~~~~~~~~a~~~L~~~g~~~Vvvt~g~~~G~~~~~~~------------~~dt~GAGD~f~g~l~~~l~~~g~~~~~ 233 (289)
.+..+.+++.++++.+++.|++.|++|+|. +|+++...+ .+||+||||+|+|+|++++.+ |+++++
T Consensus 215 ~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~-~Ga~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~l~~l~~-g~~~~~ 292 (326)
T PTZ00292 215 MEVTDTESAFKASKELQQLGVENVIITLGA-NGCLIVEKENEPVHVPGKRVKAVDTTGAGDCFVGSMAYFMSR-GKDLKE 292 (326)
T ss_pred CCCCChhHHHHHHHHHHHcCCCeEEEEeCC-CcEEEEeCCCceEEccCCccccCCCcchHHHHHHHHHHHHHC-CCCHHH
Confidence 876666777788888888899999999997 898775432 179999999999999999998 999999
Q ss_pred HHHHHHHHHHHHHHH
Q 022988 234 AAELAVSSLQALLQR 248 (289)
Q Consensus 234 A~~~A~a~a~~~l~~ 248 (289)
|+++|++++..++++
T Consensus 293 al~~a~a~Aa~~v~~ 307 (326)
T PTZ00292 293 SCKRANRIAAISVTR 307 (326)
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999997665544
No 29
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=99.88 E-value=3.2e-21 Score=173.82 Aligned_cols=206 Identities=22% Similarity=0.226 Sum_probs=145.5
Q ss_pred cCccchhh---cHHHHHhCCCcceeeceEE-------eecCCCCCC-c--ceeeCCHHHHHHHHHHHHhCCCcccCE-EE
Q 022988 26 QGYVGNKS---AVFPLQLLGYDVDPIHSVQ-------FSNHTGYPT-F--KGQVLNGQQLCDLIEGLEANNLLYYTH-LL 91 (289)
Q Consensus 26 ~G~vG~~~---~~~~l~~~Gv~~~~v~~~~-------~~~~tg~~~-i--~g~~l~~~~~~~~~~~l~~~~~~~~~~-v~ 91 (289)
+|.+|+|. ....|++.||+++++.... +...+|... + .+..+++++++.+.+.+.+. +-..+. ++
T Consensus 55 is~vG~D~g~~~~~~L~~~gId~~~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~v~~ 133 (304)
T TIGR03828 55 LGFLGGFTGDFIEALLREEGIKTDFVRVPGETRINVKIKEPSGTETKLNGPGPEISEEELEALLEKLRAQ-LAEGDWLVL 133 (304)
T ss_pred EEEecCchhHHHHHHHHHCCCcceEEECCCCCeeeEEEEeCCCCEEEEECCCCCCCHHHHHHHHHHHHHh-ccCCCEEEE
Confidence 45666653 3445899999998875431 001122111 0 23346666666655544321 112454 45
Q ss_pred EeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhCCCCCCH
Q 022988 92 TGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSE 171 (289)
Q Consensus 92 ~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g~~~~~~ 171 (289)
.|+.+...+.+.+.++++.++++ +.++++||+.. . +.+.+...+|+++||+.|++.|+|.+..+.
T Consensus 134 ~g~~~~~~~~~~~~~~~~~~~~~--~~~v~~D~~~~---------~----~~~~~~~~~~i~~~n~~E~~~l~g~~~~~~ 198 (304)
T TIGR03828 134 SGSLPPGVPPDFYAELIALAREK--GAKVILDTSGE---------A----LRDGLKAKPFLIKPNDEELEELFGRELKTL 198 (304)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHc--CCEEEEECChH---------H----HHHHHhcCCcEECcCHHHHHHHhCCCCCCH
Confidence 57665544567788888999887 88999999431 1 112233468999999999999999877777
Q ss_pred HHHHHHHHHHHhcCCCeEEEeeeecCCcEEEecc-----------cCCCCCchHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 022988 172 ADGREACKILHAAGPAKVVITSINIDGNLFLIGS-----------HQKEKGTGDLMTALLLGWSNKYRDNLDIAAELAVS 240 (289)
Q Consensus 172 ~~~~~a~~~L~~~g~~~Vvvt~g~~~G~~~~~~~-----------~~dt~GAGD~f~g~l~~~l~~~g~~~~~A~~~A~a 240 (289)
+++.++++.|++.|++.||+|.|. +|++++..+ .+||+||||+|+|+|+++|.+ |.++++|+++|++
T Consensus 199 ~~~~~~~~~l~~~g~~~vvvT~G~-~G~~~~~~~~~~~~~~~~~~vvDttGAGDaF~a~~l~~l~~-g~~~~~a~~~a~~ 276 (304)
T TIGR03828 199 EEIIEAARELLDLGAENVLISLGA-DGALLVTKEGALFAQPPKGEVVSTVGAGDSMVAGFLAGLES-GLSLEEALRLAVA 276 (304)
T ss_pred HHHHHHHHHHHHcCCCEEEEccCC-CCcEEEcCCceEEEeCCCccccCCcChHHHHHHHHHHHHHc-CCCHHHHHHHHHH
Confidence 888888999999999999999997 888765432 279999999999999999998 9999999999999
Q ss_pred HHHHHHHHH
Q 022988 241 SLQALLQRT 249 (289)
Q Consensus 241 ~a~~~l~~~ 249 (289)
++..++.+.
T Consensus 277 ~Aa~~~~~~ 285 (304)
T TIGR03828 277 AGSAAAFSE 285 (304)
T ss_pred HHHHHhcCc
Confidence 976555443
No 30
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=99.88 E-value=1e-21 Score=176.10 Aligned_cols=206 Identities=22% Similarity=0.269 Sum_probs=140.5
Q ss_pred ccCccchhh----cHHHHHhCCCcceeeceEEeecCCCC----------CCc---ce----eeCCHHHHHHHHHHHHhCC
Q 022988 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGY----------PTF---KG----QVLNGQQLCDLIEGLEANN 83 (289)
Q Consensus 25 ~~G~vG~~~----~~~~l~~~Gv~~~~v~~~~~~~~tg~----------~~i---~g----~~l~~~~~~~~~~~l~~~~ 83 (289)
..|.+|.|. ..+.|++.||++.++.... ...|+. ..+ .+ ..++.++++ .+.+.+
T Consensus 50 ~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~-~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~-- 124 (294)
T cd01166 50 LVTAVGDDPFGRFILAELRREGVDTSHVRVDP-GRPTGLYFLEIGAGGERRVLYYRAGSAASRLTPEDLD--EAALAG-- 124 (294)
T ss_pred EEEecCCCHHHHHHHHHHHHcCCCCceEEEeC-CCcceEEEEEecCCCCceEEEeCCCChhHhCChhhCC--HHHHhC--
Confidence 467788764 3455899999998885432 112221 111 00 122323322 123333
Q ss_pred CcccCEE-EEeecCCHhH--HHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHH
Q 022988 84 LLYYTHL-LTGYIGSVSF--LNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEA 160 (289)
Q Consensus 84 ~~~~~~v-~~G~l~~~~~--~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~ 160 (289)
.+.+ +.|+.+...+ .+.+.++++.++++ ++++++||+++.. .|......+.+. .+++++|+++||+.|+
T Consensus 125 ---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~D~~~~~~--~~~~~~~~~~~~-~~~~~~dil~~n~~E~ 196 (294)
T cd01166 125 ---ADHLHLSGITLALSESAREALLEALEAAKAR--GVTVSFDLNYRPK--LWSAEEAREALE-ELLPYVDIVLPSEEEA 196 (294)
T ss_pred ---CCEEEEcCcchhhCHHHHHHHHHHHHHHHHc--CCEEEECCCCcch--hcChHHHHHHHH-HHHHhCCEEEcCHHHH
Confidence 4444 4455543222 47788899999887 8999999976532 122222334444 4889999999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHhcCCCeEEEeeeecCCcEEEecc-----------cCCCCCchHHHHHHHHHHHccCCC
Q 022988 161 EQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGS-----------HQKEKGTGDLMTALLLGWSNKYRD 229 (289)
Q Consensus 161 ~~L~g~~~~~~~~~~~a~~~L~~~g~~~Vvvt~g~~~G~~~~~~~-----------~~dt~GAGD~f~g~l~~~l~~~g~ 229 (289)
+.|+|.+. .+++.+.++.+ ++|++.|++|+|+ +|+++..++ .+||+||||+|+|+|++++.+ |.
T Consensus 197 ~~l~~~~~--~~~~~~~~~~l-~~g~~~viit~G~-~G~~~~~~~~~~~~~~~~~~~vdt~GAGD~f~a~~~~~l~~-g~ 271 (294)
T cd01166 197 EALLGDED--PTDAAERALAL-ALGVKAVVVKLGA-EGALVYTGGGRVFVPAYPVEVVDTTGAGDAFAAGFLAGLLE-GW 271 (294)
T ss_pred HHHhCCCC--chhHHHHHHhh-cCCccEEEEEEcC-CceEEEECCceEEeCCCCcccccCCCchHHHHHHHHHHHHc-CC
Confidence 99998743 24555666666 6899999999997 888776542 279999999999999999998 99
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 022988 230 NLDIAAELAVSSLQALLQR 248 (289)
Q Consensus 230 ~~~~A~~~A~a~a~~~l~~ 248 (289)
++++|+++|+++++.++++
T Consensus 272 ~~~~a~~~a~~~aa~~i~~ 290 (294)
T cd01166 272 DLEEALRFANAAAALVVTR 290 (294)
T ss_pred CHHHHHHHHHHHHHHHHhc
Confidence 9999999999998777654
No 31
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=99.88 E-value=4e-21 Score=174.04 Aligned_cols=197 Identities=19% Similarity=0.188 Sum_probs=142.2
Q ss_pred cHHHHHhCCCcceeeceEE--------eecCCCCCC-c--ceeeCCHHHHHHHHHHHHhCCCcccC-EEEEeecCCHhHH
Q 022988 34 AVFPLQLLGYDVDPIHSVQ--------FSNHTGYPT-F--KGQVLNGQQLCDLIEGLEANNLLYYT-HLLTGYIGSVSFL 101 (289)
Q Consensus 34 ~~~~l~~~Gv~~~~v~~~~--------~~~~tg~~~-i--~g~~l~~~~~~~~~~~l~~~~~~~~~-~v~~G~l~~~~~~ 101 (289)
....|++.||++.++.... ....+|-.. + .+..++.++++.+.+.+.... ..+ +++.|+++...+.
T Consensus 69 i~~~l~~~gv~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~i~g~~~~~~~~ 146 (309)
T PRK10294 69 LVSLLADENVPVATVEAKDWTRQNLHVHVEASGEQYRFVMPGAALNEDEFRQLEEQVLEIE--SGAILVISGSLPPGVKL 146 (309)
T ss_pred HHHHHHHcCCCceEEECCCCCeeeEEEEEcCCCcEEEEECCCCCCCHHHHHHHHHHHHhcC--CCCEEEEeCCCCCCCCH
Confidence 3456899999988775421 001122111 0 233466666666554443221 234 4566887766667
Q ss_pred HHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhCCCCCCHHHHHHHHHHH
Q 022988 102 NTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKIL 181 (289)
Q Consensus 102 ~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g~~~~~~~~~~~a~~~L 181 (289)
+.+.++++.++++ ++++++||+. . .... ...++++|+++||+.|++.|+|.+..+.++++++++.|
T Consensus 147 ~~~~~~~~~a~~~--g~~v~~D~~~----~-----~~~~---~~~~~~~~~i~~n~~E~~~l~g~~~~~~~~~~~a~~~l 212 (309)
T PRK10294 147 EKLTQLISAAQKQ--GIRCIIDSSG----D-----ALSA---ALAIGNIELVKPNQKELSALVNRDLTQPDDVRKAAQEL 212 (309)
T ss_pred HHHHHHHHHHHHc--CCeEEEeCCC----H-----HHHH---HHhcCCCeEECCCHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 7888999999987 8999999941 1 1111 11246899999999999999998777777888999999
Q ss_pred HhcC-CCeEEEeeeecCCcEEEecc-----------cCCCCCchHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHH
Q 022988 182 HAAG-PAKVVITSINIDGNLFLIGS-----------HQKEKGTGDLMTALLLGWSNKYRDNLDIAAELAVSSLQALLQR 248 (289)
Q Consensus 182 ~~~g-~~~Vvvt~g~~~G~~~~~~~-----------~~dt~GAGD~f~g~l~~~l~~~g~~~~~A~~~A~a~a~~~l~~ 248 (289)
++.+ ++.|+||+|+ +|+++..++ .+||+||||+|+|+|++++.+ |+++++|+++|++++..++++
T Consensus 213 ~~~~~~~~vvvT~G~-~G~~~~~~~~~~~~~~~~v~vvDttGAGDaf~ag~l~~l~~-g~~~~~al~~a~a~aa~~v~~ 289 (309)
T PRK10294 213 VNSGKAKRVVVSLGP-QGALGVDSENCIQVVPPPVKSQSTVGAGDSMVGAMTLKLAE-NASLEEMVRFGVAAGSAATLN 289 (309)
T ss_pred HHcCCCCEEEEecCC-CceEEEcCCccEEEeCCCcccCCCcchHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcC
Confidence 8877 7899999997 898776532 279999999999999999998 999999999999997666544
No 32
>PTZ00247 adenosine kinase; Provisional
Probab=99.88 E-value=1.3e-21 Score=179.95 Aligned_cols=208 Identities=19% Similarity=0.212 Sum_probs=138.7
Q ss_pred ccCccchhh----cHHHHHhCCCcceeeceEEeecCCCC---------CCc---ce--eeCCHHHHHHH--HHHHHhCCC
Q 022988 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGY---------PTF---KG--QVLNGQQLCDL--IEGLEANNL 84 (289)
Q Consensus 25 ~~G~vG~~~----~~~~l~~~Gv~~~~v~~~~~~~~tg~---------~~i---~g--~~l~~~~~~~~--~~~l~~~~~ 84 (289)
+.|.+|.|. ....|++.||++.++... ..+||. +.+ .| ..+++++++.. .+.+.+.++
T Consensus 85 ~ig~vG~D~~G~~i~~~l~~~GVd~~~~~~~--~~~Tg~~~i~v~~~~r~~~~~~ga~~~l~~~~i~~~~~~~~l~~~~~ 162 (345)
T PTZ00247 85 YVGCVGDDRFAEILKEAAEKDGVEMLFEYTT--KAPTGTCAVLVCGKERSLVANLGAANHLSAEHMQSHAVQEAIKTAQL 162 (345)
T ss_pred EEEEeccchhHHHHHHHHHHcCCeeeccccC--CCCcEEEEEEEcCCCcccccCcchhhcCChHHcCcHHHHHHHhhCCE
Confidence 568888876 445689999998776321 123332 111 11 24555555432 223444333
Q ss_pred cccCEEEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhh
Q 022988 85 LYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLT 164 (289)
Q Consensus 85 ~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~ 164 (289)
.++.|+... .+.+.+.++++.+|++ ++++++||... . ......+.+.+ +++++|+++||+.|++.|+
T Consensus 163 ----v~~~g~~~~-~~~~~~~~~~~~a~~~--g~~v~~d~~~~----~-~~~~~~~~~~~-~l~~~Dil~~N~~Ea~~l~ 229 (345)
T PTZ00247 163 ----YYLEGFFLT-VSPNNVLQVAKHARES--GKLFCLNLSAP----F-ISQFFFERLLQ-VLPYVDILFGNEEEAKTFA 229 (345)
T ss_pred ----EEEEEEEec-ccHHHHHHHHHHHHHc--CCEEEEECCcH----H-HHHHHHHHHHH-HHhhCCEEEeCHHHHHHHh
Confidence 234454322 2457788899999987 99999997421 1 11111233433 8899999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHh------cCCCeEEEeeeecCCcEEEecc--------------cCCCCCchHHHHHHHHHHH
Q 022988 165 GFRIGSEADGREACKILHA------AGPAKVVITSINIDGNLFLIGS--------------HQKEKGTGDLMTALLLGWS 224 (289)
Q Consensus 165 g~~~~~~~~~~~a~~~L~~------~g~~~Vvvt~g~~~G~~~~~~~--------------~~dt~GAGD~f~g~l~~~l 224 (289)
|....+.++..++++.|.+ .+++.|+||+|+ +|+++...+ .+|||||||+|+|+|++++
T Consensus 230 g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvvT~G~-~G~~~~~~~~~~~~~~~~v~~~~vVDTtGAGDaF~agfl~~l 308 (345)
T PTZ00247 230 KAMKWDTEDLKEIAARIAMLPKYSGTRPRLVVFTQGP-EPTLIATKDGVTSVPVPPLDQEKIVDTNGAGDAFVGGFLAQY 308 (345)
T ss_pred hccCCCccCHHHHHHHHHhccccccCCCCEEEEecCC-CceEEEECCEEEEEeccccCCCCccCCCChHHHHHHHHHHHH
Confidence 9422222345666666653 247899999997 898775432 2699999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHH
Q 022988 225 NKYRDNLDIAAELAVSSLQALLQRT 249 (289)
Q Consensus 225 ~~~g~~~~~A~~~A~a~a~~~l~~~ 249 (289)
.+ |+++++|+++|+++++.++++.
T Consensus 309 ~~-g~~~~~al~~a~~aAa~~v~~~ 332 (345)
T PTZ00247 309 AN-GKDIDRCVEAGHYSAQVIIQHN 332 (345)
T ss_pred Hc-CCCHHHHHHHHHHHHHHHHhcc
Confidence 98 9999999999999976666553
No 33
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=99.87 E-value=1.1e-20 Score=171.36 Aligned_cols=205 Identities=19% Similarity=0.174 Sum_probs=143.6
Q ss_pred cCccchhh---cHHHHHhCCCcceeeceEE-------eecCCCCCC---cceeeCCHHHHHHHHHHHHhCCCcccCE-EE
Q 022988 26 QGYVGNKS---AVFPLQLLGYDVDPIHSVQ-------FSNHTGYPT---FKGQVLNGQQLCDLIEGLEANNLLYYTH-LL 91 (289)
Q Consensus 26 ~G~vG~~~---~~~~l~~~Gv~~~~v~~~~-------~~~~tg~~~---i~g~~l~~~~~~~~~~~l~~~~~~~~~~-v~ 91 (289)
.|.+|.|. ....|+++||++..+.... +..+.|... ..+..+++.+...+....... .-.+++ ++
T Consensus 59 i~~vG~D~~~~~~~~l~~~gv~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~d~v~~ 137 (312)
T PRK09513 59 GGFLGKDNQDGFQQLFSELGIANRFQVVQGRTRINVKLTEKDGEVTDFNFSGFEVTPADWERFVTDSLSW-LGQFDMVAV 137 (312)
T ss_pred EEEecCccHHHHHHHHHHcCCCccEEECCCCCEEEEEEEeCCCcEEEEeCCCCCCCHHHHHHHHHHHHhh-cCCCCEEEE
Confidence 45666555 3345888999876543210 001111110 112235555555443322111 113565 47
Q ss_pred EeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhCCCCCCH
Q 022988 92 TGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSE 171 (289)
Q Consensus 92 ~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g~~~~~~ 171 (289)
+|+++.....+.+.++++.++++ +.++++||+.. . +...+.+.+++++||++|+..|+|.+..+.
T Consensus 138 ~g~~~~~~~~~~~~~~~~~a~~~--g~~v~~D~~~~---------~----~~~~~~~~~~~l~~n~~E~~~l~g~~~~~~ 202 (312)
T PRK09513 138 SGSLPRGVSPEAFTDWMTRLRSQ--CPCIIFDSSRE---------A----LVAGLKAAPWLVKPNRRELEIWAGRKLPEL 202 (312)
T ss_pred ECCCCCCCCHHHHHHHHHHHHhc--CCEEEEECChH---------H----HHHHhccCCeEEcCCHHHHHHHhCCCCCCH
Confidence 78877655677888899999887 88999999531 1 112245678999999999999999877677
Q ss_pred HHHHHHHHHHHhcCCCeEEEeeeecCCcEEEecc-----------cCCCCCchHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 022988 172 ADGREACKILHAAGPAKVVITSINIDGNLFLIGS-----------HQKEKGTGDLMTALLLGWSNKYRDNLDIAAELAVS 240 (289)
Q Consensus 172 ~~~~~a~~~L~~~g~~~Vvvt~g~~~G~~~~~~~-----------~~dt~GAGD~f~g~l~~~l~~~g~~~~~A~~~A~a 240 (289)
+++.++++.+.++|++.|++|.|. +|++++... .+||+||||+|+|+|++++.+ |+++++|+++|++
T Consensus 203 ~~~~~~~~~l~~~g~~~vvvt~G~-~G~~~~~~~~~~~~~~~~~~~vDttGAGDaf~ag~i~~l~~-g~~~~~a~~~A~a 280 (312)
T PRK09513 203 KDVIEAAHALREQGIAHVVISLGA-EGALWVNASGEWIAKPPACDVVSTVGAGDSMVGGLIYGLLM-RESSEHTLRLATA 280 (312)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCC-CCcEEEeCCceEEecCCCccccCCCChHHHHHHHHHHHHHc-CCCHHHHHHHHHH
Confidence 788888889989999999999997 888765432 269999999999999999998 9999999999999
Q ss_pred HHHHHHHH
Q 022988 241 SLQALLQR 248 (289)
Q Consensus 241 ~a~~~l~~ 248 (289)
++..++++
T Consensus 281 ~Aa~~~~~ 288 (312)
T PRK09513 281 VSALAVSQ 288 (312)
T ss_pred HHHHHhhC
Confidence 97766655
No 34
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=99.87 E-value=1.9e-21 Score=185.51 Aligned_cols=151 Identities=20% Similarity=0.134 Sum_probs=116.1
Q ss_pred cCE-EEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCC-hhHHHHHHHhhcCCceEEcCCHHHHHHhh
Q 022988 87 YTH-LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVP-SELVSVYREKVVPVASMLTPNQFEAEQLT 164 (289)
Q Consensus 87 ~~~-v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~-~~~~~~l~~~ll~~~dii~pN~~E~~~L~ 164 (289)
.+. ++.|+.+.+.+.+.+.++++.++++ ++++++||+++... +|.. ++..+.+.+ +++++|+++||+.|++.|+
T Consensus 225 adiv~lsg~~~~~~~~~~~~~~~~~Ak~~--g~~V~~Dp~~~~~~-~~~~~~~~~~~l~~-~L~~~Dil~~Ne~Ea~~l~ 300 (470)
T PLN02341 225 SKALFCNGYVFDELSPSAIASAVDYAIDV--GTAVFFDPGPRGKS-LLVGTPDERRALEH-LLRMSDVLLLTSEEAEALT 300 (470)
T ss_pred CCEEEEeceeCCcCCHHHHHHHHHHHHHc--CCEEEEeCCCcccc-cccChHHHHHHHHH-HHhhCCEEEecHHHHHHHh
Confidence 444 3456655455677888999999987 99999999876321 2222 222233444 8889999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcC--CCeEEEeeeecCCcEEEecc-----------cCCCCCchHHHHHHHHHHHccCCCCH
Q 022988 165 GFRIGSEADGREACKILHAAG--PAKVVITSINIDGNLFLIGS-----------HQKEKGTGDLMTALLLGWSNKYRDNL 231 (289)
Q Consensus 165 g~~~~~~~~~~~a~~~L~~~g--~~~Vvvt~g~~~G~~~~~~~-----------~~dt~GAGD~f~g~l~~~l~~~g~~~ 231 (289)
|. ++.+++++.|++.| .+.|+||+|+ +|++++..+ .+||+||||+|+|+|++++.+ |+++
T Consensus 301 g~-----~~~~~a~~~l~~~g~~~k~VVVTlG~-~Ga~~~~~~~~~~vpa~~v~vVDTtGAGDaF~Agfl~gll~-G~~l 373 (470)
T PLN02341 301 GI-----RNPILAGQELLRPGIRTKWVVVKMGS-KGSILVTRSSVSCAPAFKVNVVDTVGCGDSFAAAIALGYIH-NLPL 373 (470)
T ss_pred CC-----CCHHHHHHHHHhcCCCCCEEEEeeCC-CCeEEEECCeeEEeCCCCcCCCCCcCccHHHHHHHHHHHHc-CCCH
Confidence 96 24566788887777 4799999997 898876542 279999999999999999998 9999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022988 232 DIAAELAVSSLQALLQR 248 (289)
Q Consensus 232 ~~A~~~A~a~a~~~l~~ 248 (289)
++|+++|+++++.++..
T Consensus 374 ~eal~~A~a~aA~~v~~ 390 (470)
T PLN02341 374 VNTLTLANAVGAATAMG 390 (470)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 99999999987655543
No 35
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=99.87 E-value=5.1e-21 Score=172.52 Aligned_cols=143 Identities=22% Similarity=0.220 Sum_probs=115.0
Q ss_pred cCEEE-EeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhC
Q 022988 87 YTHLL-TGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTG 165 (289)
Q Consensus 87 ~~~v~-~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g 165 (289)
++.+. +|+.+...+.+.+.++++.++++ ++++++||..+. + .+++++|+++||+.|++.+++
T Consensus 135 ~~~v~~s~~~~~~~~~~~~~~~~~~a~~~--~~~v~~D~~~~~----~-----------~~~~~~d~l~~n~~E~~~l~~ 197 (304)
T cd01172 135 ADVVILSDYGKGVLTPRVIEALIAAAREL--GIPVLVDPKGRD----Y-----------SKYRGATLLTPNEKEAREALG 197 (304)
T ss_pred CCEEEEEcCCCCccCHHHHHHHHHHHHhc--CCCEEEeCCCcc----h-----------hhccCCcEeCCCHHHHHHHhC
Confidence 55544 46544334456778888888887 889999995431 1 267799999999999999999
Q ss_pred CCCCCHHHHHHHHHHHH-hcCCCeEEEeeeecCCcEEEe-cc-----------cCCCCCchHHHHHHHHHHHccCCCCHH
Q 022988 166 FRIGSEADGREACKILH-AAGPAKVVITSINIDGNLFLI-GS-----------HQKEKGTGDLMTALLLGWSNKYRDNLD 232 (289)
Q Consensus 166 ~~~~~~~~~~~a~~~L~-~~g~~~Vvvt~g~~~G~~~~~-~~-----------~~dt~GAGD~f~g~l~~~l~~~g~~~~ 232 (289)
.+..+.++++++++.++ +.|++.|++|+|+ +|+++.. +. .+||+||||+|+|+|+++|.+ |++++
T Consensus 198 ~~~~~~~~~~~~~~~l~~~~g~~~vvvt~G~-~G~~~~~~~~~~~~~~~~~~~vvdttGAGDaf~ag~i~~l~~-g~~~~ 275 (304)
T cd01172 198 DEINDDDELEAAGEKLLELLNLEALLVTLGE-EGMTLFERDGEVQHIPALAKEVYDVTGAGDTVIATLALALAA-GADLE 275 (304)
T ss_pred CCCCChHHHHHHHHHHHHHhCCCeEEEEcCC-CccEEEcCCCcEEEecCCCCCCCCCcCccHHHHHHHHHHHHc-CCCHH
Confidence 87666778888888876 4689999999997 8988876 32 279999999999999999998 99999
Q ss_pred HHHHHHHHHHHHHHHH
Q 022988 233 IAAELAVSSLQALLQR 248 (289)
Q Consensus 233 ~A~~~A~a~a~~~l~~ 248 (289)
+|+++|+++++.++++
T Consensus 276 ~al~~a~a~Aa~~~~~ 291 (304)
T cd01172 276 EAAFLANAAAGVVVGK 291 (304)
T ss_pred HHHHHHHHHhheeeec
Confidence 9999999997666654
No 36
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=99.87 E-value=1.1e-20 Score=171.17 Aligned_cols=204 Identities=16% Similarity=0.060 Sum_probs=139.7
Q ss_pred cCccchhh---cHHHHHhCCCcceeeceEEeecCC---------CCCCc---ceeeCCHHHHHHHHHHHHhCCCcccCEE
Q 022988 26 QGYVGNKS---AVFPLQLLGYDVDPIHSVQFSNHT---------GYPTF---KGQVLNGQQLCDLIEGLEANNLLYYTHL 90 (289)
Q Consensus 26 ~G~vG~~~---~~~~l~~~Gv~~~~v~~~~~~~~t---------g~~~i---~g~~l~~~~~~~~~~~l~~~~~~~~~~v 90 (289)
.|.+|++. ..+.|++ ||++.++... ..| |...+ .+..++.++...+++.+.+. +-..+.+
T Consensus 56 ~~~vGd~~G~~i~~~l~~-gI~~~~~~~~---~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v 130 (309)
T PRK13508 56 TGLIGGELGQFIAEHLDD-QIKHAFYKIK---GETRNCIAILHEGQQTEILEKGPEISVQEADGFLHHFKQL-LESVEVV 130 (309)
T ss_pred EEEecChhHHHHHHHHHc-CCCceEEECC---CCCeeeEEEEeCCCEEEEECCCCCCCHHHHHHHHHHHHHh-ccCCCEE
Confidence 45666322 3445888 9998765321 112 11111 22345555554444443321 1135544
Q ss_pred -EEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhCCCCC
Q 022988 91 -LTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIG 169 (289)
Q Consensus 91 -~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g~~~~ 169 (289)
+.|+++...+.+.+.++++.++++ ++++++||+... ...+.. .++++|+++||+.|++.|+|.+..
T Consensus 131 ~~~g~~~~~~~~~~~~~~~~~a~~~--g~~v~~D~~~~~----------~~~~~~-~~~~~dii~~n~~E~~~l~g~~~~ 197 (309)
T PRK13508 131 AISGSLPAGLPVDYYAQLIELANQA--GKPVVLDCSGAA----------LQAVLE-SPYKPTVIKPNIEELSQLLGKEVS 197 (309)
T ss_pred EEeCCCCCCcCHHHHHHHHHHHHHC--CCEEEEECCcHH----------HHHHHh-ccCCceEEccCHHHHHHHhCCCCC
Confidence 556665444456778888889887 899999995321 111112 357899999999999999997653
Q ss_pred -CHHHHHHHHHHHHhcCCCeEEEeeeecCCcEEEecc-----------cCCCCCchHHHHHHHHHHHccCCCCHHHHHHH
Q 022988 170 -SEADGREACKILHAAGPAKVVITSINIDGNLFLIGS-----------HQKEKGTGDLMTALLLGWSNKYRDNLDIAAEL 237 (289)
Q Consensus 170 -~~~~~~~a~~~L~~~g~~~Vvvt~g~~~G~~~~~~~-----------~~dt~GAGD~f~g~l~~~l~~~g~~~~~A~~~ 237 (289)
+.+++.++++++++.|++.|++|+|. +|+++..++ .+||+||||+|+|+|++++.+ |+++++|+++
T Consensus 198 ~~~~~~~~~~~~~~~~g~~~vvvT~G~-~G~~~~~~~~~~~~~~~~v~vvDttGAGDaF~Agfi~~l~~-g~~~~~al~~ 275 (309)
T PRK13508 198 EDLDELKEVLQQPLFEGIEWIIVSLGA-DGAFAKHNDTFYKVDIPKIEVVNPVGSGDSTVAGIASGLLH-QEDDADLLKK 275 (309)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC-CceEEEeCCceEEEeCCCccccCCcChhHHHHHHHHHHHHc-CCCHHHHHHH
Confidence 45677777778878899999999997 898776432 279999999999999999998 9999999999
Q ss_pred HHHHHHHHHHHH
Q 022988 238 AVSSLQALLQRT 249 (289)
Q Consensus 238 A~a~a~~~l~~~ 249 (289)
|+++++.++++.
T Consensus 276 a~a~aa~~~~~~ 287 (309)
T PRK13508 276 ANVLGMLNAQEK 287 (309)
T ss_pred HHHHHHHHhcCc
Confidence 999976666444
No 37
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=99.87 E-value=1.6e-20 Score=168.34 Aligned_cols=204 Identities=22% Similarity=0.205 Sum_probs=143.6
Q ss_pred cCccchhh---cHHHHHhCCCcceeeceEE-------eecCCCCC-Cc--ceeeCCHHHHHHHHHHHHhCCCcccCE-EE
Q 022988 26 QGYVGNKS---AVFPLQLLGYDVDPIHSVQ-------FSNHTGYP-TF--KGQVLNGQQLCDLIEGLEANNLLYYTH-LL 91 (289)
Q Consensus 26 ~G~vG~~~---~~~~l~~~Gv~~~~v~~~~-------~~~~tg~~-~i--~g~~l~~~~~~~~~~~l~~~~~~~~~~-v~ 91 (289)
.|.+|.|. ....|++.||++.++.... +....|-. .+ .+..+++++++.+.+.+.+.. -.++. ++
T Consensus 56 is~vG~D~g~~i~~~l~~~gi~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i 134 (289)
T cd01164 56 LGFLGGFTGDFFEALLKEEGIPDDFVEVAGETRINVKIKEEDGTETEINEPGPEISEEELEALLEKLKALL-KKGDIVVL 134 (289)
T ss_pred EEEccCchhHHHHHHHHHcCCCceEEECCCCCEEEEEEEeCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCCEEEE
Confidence 45556442 3345889999988765321 00111110 11 233466667766655443211 02554 45
Q ss_pred EeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhCCCCCCH
Q 022988 92 TGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSE 171 (289)
Q Consensus 92 ~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g~~~~~~ 171 (289)
.|.++.....+.+..+++.++++ ++++++||+... +.+.+.+.+|+++||+.|++.++|....+.
T Consensus 135 ~g~~~~~~~~~~~~~~~~~~~~~--~~~i~~D~~~~~-------------~~~~~~~~~dil~~n~~E~~~l~~~~~~~~ 199 (289)
T cd01164 135 SGSLPPGVPADFYAELVRLAREK--GARVILDTSGEA-------------LLAALAAKPFLIKPNREELEELFGRPLGDE 199 (289)
T ss_pred eCCCCCCcCHHHHHHHHHHHHHc--CCeEEEECChHH-------------HHHHHhcCCcEECCCHHHHHHHhCCCCCCH
Confidence 57776544456777888888877 889999994321 112123799999999999999999877777
Q ss_pred HHHHHHHHHHHhcCCCeEEEeeeecCCcEEEecc-----------cCCCCCchHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 022988 172 ADGREACKILHAAGPAKVVITSINIDGNLFLIGS-----------HQKEKGTGDLMTALLLGWSNKYRDNLDIAAELAVS 240 (289)
Q Consensus 172 ~~~~~a~~~L~~~g~~~Vvvt~g~~~G~~~~~~~-----------~~dt~GAGD~f~g~l~~~l~~~g~~~~~A~~~A~a 240 (289)
++..++++.|++.|++.|++|.|. +|+++..++ .+||+||||+|+|+|++++.+ |+++++|+++|++
T Consensus 200 ~~~~~~~~~l~~~g~~~vivt~G~-~G~~~~~~~~~~~~~~~~~~vvDttGAGDaf~a~~i~~l~~-g~~~~~a~~~A~~ 277 (289)
T cd01164 200 EDVIAAARKLIERGAENVLVSLGA-DGALLVTKDGVYRASPPKVKVVSTVGAGDSMVAGFVAGLAQ-GLSLEEALRLAVA 277 (289)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCC-CCCEEEcCCcEEEecCCCccccCCCChHHHHHHHHHHHHHc-CCCHHHHHHHHHH
Confidence 888899999999999999999997 888765432 269999999999999999998 9999999999999
Q ss_pred HHHHHHH
Q 022988 241 SLQALLQ 247 (289)
Q Consensus 241 ~a~~~l~ 247 (289)
+++..++
T Consensus 278 ~Aa~~~~ 284 (289)
T cd01164 278 AGSATAF 284 (289)
T ss_pred HHHHHhc
Confidence 9766554
No 38
>PRK09850 pseudouridine kinase; Provisional
Probab=99.86 E-value=1.3e-20 Score=171.09 Aligned_cols=198 Identities=18% Similarity=0.183 Sum_probs=133.9
Q ss_pred ccCccchhh----cHHHHHhCCCcceeeceEEeecCCCC----------CCc--ce----eeCCHHHHHHHHHHHHhCCC
Q 022988 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGY----------PTF--KG----QVLNGQQLCDLIEGLEANNL 84 (289)
Q Consensus 25 ~~G~vG~~~----~~~~l~~~Gv~~~~v~~~~~~~~tg~----------~~i--~g----~~l~~~~~~~~~~~l~~~~~ 84 (289)
+.|.+|.|. ....|++.||+++++.... ..+|+. ..+ .. ..++++.+....+.+..
T Consensus 59 ~ig~vG~D~~g~~i~~~l~~~gVd~~~~~~~~-~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 134 (313)
T PRK09850 59 LLSAVGSDFYGQSLLTQTNQSGVYVDKCLIVP-GENTSSYLSLLDNTGEMLVAINDMNISNAITAEYLAQHREFIQR--- 134 (313)
T ss_pred EEEEecCchhHHHHHHHHHHcCCCchheeecC-CCCceEEEEEecCCCCEEEEecCchHhhhCCHHHHHHHHHHHhc---
Confidence 367888775 3456899999988764322 112221 111 00 12233333333233333
Q ss_pred cccCEEEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhh
Q 022988 85 LYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLT 164 (289)
Q Consensus 85 ~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~ 164 (289)
.+.+.+.. ..+.+.+..+++++ + ++++++||+.. |.. ..++ .+++++|+++||+.|++.|+
T Consensus 135 --~~~v~~~~---~~~~~~~~~~~~~~--~--g~~v~~D~~~~-----~~~----~~~~-~~l~~~dil~~N~~Ea~~l~ 195 (313)
T PRK09850 135 --AKVIVADC---NISEEALAWILDNA--A--NVPVFVDPVSA-----WKC----VKVR-DRLNQIHTLKPNRLEAETLS 195 (313)
T ss_pred --CCEEEEeC---CCCHHHHHHHHHhc--c--CCCEEEEcCCH-----HHH----HHHH-hhhccceEEccCHHHHHHHh
Confidence 44443321 12234455555533 3 78999999632 111 1233 37889999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCeEEEeeeecCCcEEEec--c----------cCCCCCchHHHHHHHHHHHccCCCCHH
Q 022988 165 GFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIG--S----------HQKEKGTGDLMTALLLGWSNKYRDNLD 232 (289)
Q Consensus 165 g~~~~~~~~~~~a~~~L~~~g~~~Vvvt~g~~~G~~~~~~--~----------~~dt~GAGD~f~g~l~~~l~~~g~~~~ 232 (289)
|....+.+++.++++.|.+.|++.|+||.|. +|+++... . .+||+||||+|+|+|++++.+ |+++.
T Consensus 196 g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~-~G~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~agfi~~l~~-g~~~~ 273 (313)
T PRK09850 196 GIALSGREDVAKVAAWFHQHGLNRLVLSMGG-DGVYYSDISGESGWSAPIKTNVINVTGAGDAMMAGLASCWVD-GMPFA 273 (313)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEEeCC-ceEEEEcCCCCeEecCCCCcccccCCCcHHHHHHHHHHHHHc-CCCHH
Confidence 9877666788888999988999999999997 89887652 1 279999999999999999998 99999
Q ss_pred HHHHHHHHHHHHHHH
Q 022988 233 IAAELAVSSLQALLQ 247 (289)
Q Consensus 233 ~A~~~A~a~a~~~l~ 247 (289)
+|+++|+++++.+++
T Consensus 274 eal~~a~a~aa~~~~ 288 (313)
T PRK09850 274 ESVRFAQGCSSMALS 288 (313)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999877764
No 39
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=99.86 E-value=4.4e-21 Score=182.42 Aligned_cols=210 Identities=15% Similarity=0.109 Sum_probs=140.5
Q ss_pred ccCccchhh----cHHHHHhCCCcceeeceEEeecCCCCC-----------Ccc-----e--eeCCHHHHHHHHHHHHhC
Q 022988 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGYP-----------TFK-----G--QVLNGQQLCDLIEGLEAN 82 (289)
Q Consensus 25 ~~G~vG~~~----~~~~l~~~Gv~~~~v~~~~~~~~tg~~-----------~i~-----g--~~l~~~~~~~~~~~l~~~ 82 (289)
++|+||+|. ....|++.||+++++.... ...|+.. .+. + ..+++++++. +.+..
T Consensus 191 fIG~VGdD~fG~~l~~~L~~~GVDts~v~~~~-~~~Tgla~V~v~~~~~gr~~~~~~~~gA~~~L~~~di~~--~~l~~- 266 (496)
T PLN02543 191 FMGKVGDDDFGEELVLMMNKERVQTRAVKFDE-NAKTACSRMKIKFRDGGKMVAETVKEAAEDSLLASELNL--AVLKE- 266 (496)
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCcccceEecC-CCCCceEEEEEEeCCCCCEEEEecCCCHHHhCChhhcCH--hHhCC-
Confidence 468889887 4456999999998886432 1123321 110 0 0122333221 12333
Q ss_pred CCcccCEEEEeec--CCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCC-hhHHHHHHHhhcCCceEEcCCHHH
Q 022988 83 NLLYYTHLLTGYI--GSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVP-SELVSVYREKVVPVASMLTPNQFE 159 (289)
Q Consensus 83 ~~~~~~~v~~G~l--~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~-~~~~~~l~~~ll~~~dii~pN~~E 159 (289)
++.+..+.. .++...+.+.++++.+|++ |++|+|||+++.. +|-+ ++..+.+.+ +++++||+++|++|
T Consensus 267 ----a~ilh~~~~~l~~~~~~~a~~~al~~Ak~~--G~~VsfDpN~R~~--LW~~~~~~~~~i~~-~l~~aDIl~~SeeE 337 (496)
T PLN02543 267 ----ARMFHFNSEVLTSPSMQSTLFRAIELSKKF--GGLIFFDLNLPLP--LWRSRDETRELIKK-AWNEADIIEVSRQE 337 (496)
T ss_pred ----CceEEECChhhcCchHHHHHHHHHHHHHHC--CCEEEEeCCCCcc--ccCCHHHHHHHHHH-HHHhCCEEEecHHH
Confidence 334444432 2233467888999999988 9999999998754 5633 344555554 88999999999999
Q ss_pred HHHhhCCCCC------CHH------------------HHHHHHHHHHhcCCCeEEEeeeecCCcEEEec-----------
Q 022988 160 AEQLTGFRIG------SEA------------------DGREACKILHAAGPAKVVITSINIDGNLFLIG----------- 204 (289)
Q Consensus 160 ~~~L~g~~~~------~~~------------------~~~~a~~~L~~~g~~~Vvvt~g~~~G~~~~~~----------- 204 (289)
++.|+|.+.. +.+ +.+. +..+++.|++.|+||.|. +|+++...
T Consensus 338 a~~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~g~~~VVVT~G~-~Ga~~~t~~~~g~v~~~~~ 415 (496)
T PLN02543 338 LEFLLDEDYYERKRNYPPQYYAESFEQTKNWRDYYHYTPEE-IAPLWHDGLKLLLVTDGT-LRIHYYTPKFDGVVVGTED 415 (496)
T ss_pred HHHHhCCCcccccccccchhhhhhhhhhhcccccccCCHHH-HHHHHHCCCCEEEEEcCC-CcEEEEECCCccccccccc
Confidence 9999996421 111 1222 456777799999999997 89887652
Q ss_pred ---c--cCCCCCchHHHHHHHHHHHcc------CCCCHHHHHHHHHHHHHHHHHHHHH
Q 022988 205 ---S--HQKEKGTGDLMTALLLGWSNK------YRDNLDIAAELAVSSLQALLQRTVN 251 (289)
Q Consensus 205 ---~--~~dt~GAGD~f~g~l~~~l~~------~g~~~~~A~~~A~a~a~~~l~~~~~ 251 (289)
. .+|||||||+|+|||+++|.+ .+.++++|+++|++++ ++.++..
T Consensus 416 ~~v~~~~VDTTGAGDAF~AGfL~~Ll~~~~~~~~g~~l~ealrfAnAaa--Al~vt~~ 471 (496)
T PLN02543 416 VLITPFTCDRTGSGDAVVAAIMRKLTTCPEMFEDQDVLERQLRFAVAAG--IISQWTI 471 (496)
T ss_pred ccCCCCCcCCCchHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHH--HHHHcCC
Confidence 0 279999999999999999973 1578999999999885 4444443
No 40
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=99.86 E-value=2.3e-20 Score=169.30 Aligned_cols=202 Identities=20% Similarity=0.199 Sum_probs=136.3
Q ss_pred ccCccchhh----cHHHHHhCCCcceeeceEEeecCCCCCCc-------------ce-eeCCHHHHHHHHHHHHhCCCcc
Q 022988 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGYPTF-------------KG-QVLNGQQLCDLIEGLEANNLLY 86 (289)
Q Consensus 25 ~~G~vG~~~----~~~~l~~~Gv~~~~v~~~~~~~~tg~~~i-------------~g-~~l~~~~~~~~~~~l~~~~~~~ 86 (289)
.+|.+|+|. ....|++.||++..+.... ..+|+.... .. ..++.+.....++.+... +-.
T Consensus 66 ~i~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~ 143 (315)
T TIGR02198 66 LVGVVGDDEAGKRLEALLAEEGIDTSGLIRDK-DRPTTTKTRVLARNQQLLRVDFEERDPINAELEARLLAAIREQ-LAS 143 (315)
T ss_pred EEEEEecchhHHHHHHHHHHCCCCcceEEECC-CCCcceEEEEEcCCeEEEEecCCCCCCCCHHHHHHHHHHHHhh-hhh
Confidence 357777775 3345888999987664332 112332100 00 113432222222222111 113
Q ss_pred cCEEEE-eecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhC
Q 022988 87 YTHLLT-GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTG 165 (289)
Q Consensus 87 ~~~v~~-G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g 165 (289)
++.+.+ |......+.+.+..+++.+|++ ++++++||+.. .| ..++++|+++||+.|++.|++
T Consensus 144 ~~~v~~~~~~~~~~~~~~~~~~~~~a~~~--g~~v~~D~~~~----~~-----------~~~~~~d~l~~n~~E~~~l~~ 206 (315)
T TIGR02198 144 ADAVVLSDYAKGVLTPRVVQEVIAAARKH--GKPVLVDPKGK----DF-----------SRYRGATLITPNRKEAEAAVG 206 (315)
T ss_pred CCEEEEecCCCCccCHHHHHHHHHHHHhc--CCCEEEeCCCc----ch-----------hhcCCCcEECCCHHHHHHHhC
Confidence 555544 4433334456778888999987 89999999643 11 257789999999999999999
Q ss_pred CCCCCHHHHHHHHHHHH-hcCCCeEEEeeeecCCcEEEec-c-----------cCCCCCchHHHHHHHHHHHccCCCCHH
Q 022988 166 FRIGSEADGREACKILH-AAGPAKVVITSINIDGNLFLIG-S-----------HQKEKGTGDLMTALLLGWSNKYRDNLD 232 (289)
Q Consensus 166 ~~~~~~~~~~~a~~~L~-~~g~~~Vvvt~g~~~G~~~~~~-~-----------~~dt~GAGD~f~g~l~~~l~~~g~~~~ 232 (289)
...+.++..++++.++ ++|++.|+||.|+ +|+++... + .+||+||||+|+|+|++++.+ |++++
T Consensus 207 -~~~~~~~~~~~~~~l~~~~g~~~vivT~G~-~G~~~~~~~~~~~~~~~~~~~vvdt~GAGDaf~ag~~~~l~~-g~~~~ 283 (315)
T TIGR02198 207 -ACDTEAELVQAAEKLLEELDLEALLVTRSE-KGMTLFTREGEPIHIPAQAREVYDVTGAGDTVIATLALALAA-GASLE 283 (315)
T ss_pred -CCCCHHHHHHHHHHHHHHcCCCEEEEEcCC-CCeEEEecCCCeEEecCCCCCCCCCcCccHHHHHHHHHHHHc-CCCHH
Confidence 3344567777777776 4789999999997 89877652 1 169999999999999999998 99999
Q ss_pred HHHHHHHHHHHHHHHH
Q 022988 233 IAAELAVSSLQALLQR 248 (289)
Q Consensus 233 ~A~~~A~a~a~~~l~~ 248 (289)
+|+++|+++++.++++
T Consensus 284 ~al~~A~~~aa~~~~~ 299 (315)
T TIGR02198 284 EACRLANAAAGVVVGK 299 (315)
T ss_pred HHHHHHHHHhhhhhcc
Confidence 9999999987666654
No 41
>PLN02967 kinase
Probab=99.86 E-value=4.7e-21 Score=184.14 Aligned_cols=210 Identities=14% Similarity=0.150 Sum_probs=140.5
Q ss_pred ccCccchhh----cHHHHHhCCCcceeeceEEeecCCCCCCc----cee------------eCCHHHHHHHHHHHHhCCC
Q 022988 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGYPTF----KGQ------------VLNGQQLCDLIEGLEANNL 84 (289)
Q Consensus 25 ~~G~vG~~~----~~~~l~~~Gv~~~~v~~~~~~~~tg~~~i----~g~------------~l~~~~~~~~~~~l~~~~~ 84 (289)
++|.+|.|. ....|+..||+++++.... ..+|+...+ .|. .++.+++.. +.+..
T Consensus 262 fIg~VGdD~~G~~ll~~L~~~GVDts~v~~~~-~~~Tgla~V~vd~~Gerr~~~~~~gAd~~L~~~di~~--~~l~~--- 335 (581)
T PLN02967 262 FMGKLGDDDYGQAMLYYLNVNKVQTRSVCIDG-KRATAVSTMKIAKRGRLKTTCVKPCAEDSLSKSEINI--DVLKE--- 335 (581)
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCcccceEecC-CCCCcEEEEEECCCCceEEEEecCChhhhCChhhcCH--hHhcC---
Confidence 467888876 4456899999998876432 123432211 111 223333321 12332
Q ss_pred cccCEEEEeecC--CHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCC-hhHHHHHHHhhcCCceEEcCCHHHHH
Q 022988 85 LYYTHLLTGYIG--SVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVP-SELVSVYREKVVPVASMLTPNQFEAE 161 (289)
Q Consensus 85 ~~~~~v~~G~l~--~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~-~~~~~~l~~~ll~~~dii~pN~~E~~ 161 (289)
++++..|.+. ++...+.+.++++.++++ |++|+|||+++.. +|.+ +...+.+.+ +++++|||++|++|++
T Consensus 336 --A~i~hfgg~~ll~e~~~~all~alk~Ak~~--Gv~VsFDpNlR~~--lw~~~e~~~e~i~e-lL~~aDILk~NeeEl~ 408 (581)
T PLN02967 336 --AKMFYFNTHSLLDPTMRSTTLRAIKISKKL--GGVIFYDLNLPLP--LWSSSEETKSFIQE-AWNLADIIEVTKQELE 408 (581)
T ss_pred --CCEEEEeCchhcccchHHHHHHHHHHHHHC--CCEEEEECCCCcc--cccchHHHHHHHHH-HHHhCCEEEECHHHHH
Confidence 3444444432 334567888999999988 9999999998754 4532 334455554 8899999999999999
Q ss_pred HhhCCCCCCH-----H-------HHHHHHHHHHhcCCCeEEEeeeecCCcEEEecc-------------c---CCCCCch
Q 022988 162 QLTGFRIGSE-----A-------DGREACKILHAAGPAKVVITSINIDGNLFLIGS-------------H---QKEKGTG 213 (289)
Q Consensus 162 ~L~g~~~~~~-----~-------~~~~a~~~L~~~g~~~Vvvt~g~~~G~~~~~~~-------------~---~dt~GAG 213 (289)
.|+|.+.... + -..+.++.++..|++.|+||.|. +|++|+... . +||||||
T Consensus 409 ~LtG~~~~~e~~~~~~~~~~~~~~~~e~a~~l~~~g~k~VVVTlG~-~Ga~~~~~~~~~~v~~~~a~~V~V~vVDTTGAG 487 (581)
T PLN02967 409 FLCGIEPTEEFDTKDNDKSKFVHYSPEVVAPLWHENLKVLFVTNGT-SKIHYYTKEHNGAVHGMEDAPITPFTSDMSASG 487 (581)
T ss_pred HHhCCCccccccccccchhccccchHHHHHHHHhCCCCEEEEEECc-cceEEEECCCceeEeeccCCCCCCCCCCCCchh
Confidence 9999632100 0 01234566777799999999997 898775431 1 6999999
Q ss_pred HHHHHHHHHHHccCC-------CCHHHHHHHHHHHHHHHHHHHHH
Q 022988 214 DLMTALLLGWSNKYR-------DNLDIAAELAVSSLQALLQRTVN 251 (289)
Q Consensus 214 D~f~g~l~~~l~~~g-------~~~~~A~~~A~a~a~~~l~~~~~ 251 (289)
|+|+|||+++|.+ + .++++|++||++++ ++.++..
T Consensus 488 DAF~AGfL~~Ll~-g~~~~~g~~~LeeaLrfAnAaA--AL~vt~~ 529 (581)
T PLN02967 488 DGIVAGLMRMLTV-QPHLITDKGYLEKTIKYAIDCG--VIDQWLL 529 (581)
T ss_pred HHHHHHHHHHHHh-ccCcccccccHHHHHHHHHHHH--HHHhccC
Confidence 9999999999986 4 57999999999985 5544543
No 42
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=99.86 E-value=1.4e-20 Score=170.44 Aligned_cols=148 Identities=14% Similarity=0.041 Sum_probs=115.9
Q ss_pred cCE-EEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhC
Q 022988 87 YTH-LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTG 165 (289)
Q Consensus 87 ~~~-v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g 165 (289)
.+. ++.|.++...+.+.+.++++.+|++ ++++++||+... ...+.+ .++++|+++||+.|++.|+|
T Consensus 127 ~~~v~~~g~~~~~~~~~~~~~~~~~a~~~--g~~v~~D~~~~~----------~~~~~~-~~~~~dil~~n~~E~~~l~g 193 (309)
T TIGR01231 127 VEVVAISGSLPKGLPQDYYAQIIERCQNK--GVPVVLDCSGAT----------LQTVLE-NPAKPTVIKPNIEELSQLLN 193 (309)
T ss_pred CCEEEEECCCCCCcCHHHHHHHHHHHHhC--CCeEEEECChHH----------HHHHHh-ccCCCeEEcCCHHHHHHHhC
Confidence 444 4557665544567788899999987 999999996431 111222 46789999999999999999
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCCeEEEeeeecCCcEEEecc-----------cCCCCCchHHHHHHHHHHHccCCCCHHH
Q 022988 166 FRIG-SEADGREACKILHAAGPAKVVITSINIDGNLFLIGS-----------HQKEKGTGDLMTALLLGWSNKYRDNLDI 233 (289)
Q Consensus 166 ~~~~-~~~~~~~a~~~L~~~g~~~Vvvt~g~~~G~~~~~~~-----------~~dt~GAGD~f~g~l~~~l~~~g~~~~~ 233 (289)
.+.. +.+++.++++.+.+.|++.|++|+|. +|+++..+. .+||+||||+|+|+|++++.+ |+++++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~g~~~vivT~G~-~G~~~~~~~~~~~~~~~~v~vvDttGAGDaF~agfl~~l~~-g~~~~~ 271 (309)
T TIGR01231 194 QELTEDLESLKQALSQPLFSGIEWIIVSLGA-QGAFAKHGHTFYKVNIPTISVVNPVGSGDSTVAGITSALLN-HESDHD 271 (309)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEccCC-CceEEEeCCeeEEeeCCccCcCCCcchHHHHHHHHHHHHHc-CCCHHH
Confidence 7543 45667777777778899999999997 898776532 279999999999999999998 999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 022988 234 AAELAVSSLQALLQRT 249 (289)
Q Consensus 234 A~~~A~a~a~~~l~~~ 249 (289)
|+++|+++++.++++.
T Consensus 272 a~~~a~a~aa~~~~~~ 287 (309)
T TIGR01231 272 LLKKANTLGMLNAQEA 287 (309)
T ss_pred HHHHHHHHHHHHhcCc
Confidence 9999999976666544
No 43
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=99.86 E-value=3.2e-20 Score=167.47 Aligned_cols=204 Identities=22% Similarity=0.218 Sum_probs=141.9
Q ss_pred cCccchhh---cHHHHHhCCCcceeeceEE-------eecCCCCCC-c--ceeeCCHHHHHHHHHHHHhCCCcccCEEE-
Q 022988 26 QGYVGNKS---AVFPLQLLGYDVDPIHSVQ-------FSNHTGYPT-F--KGQVLNGQQLCDLIEGLEANNLLYYTHLL- 91 (289)
Q Consensus 26 ~G~vG~~~---~~~~l~~~Gv~~~~v~~~~-------~~~~tg~~~-i--~g~~l~~~~~~~~~~~l~~~~~~~~~~v~- 91 (289)
+|.+|.|. ....|++.||++.++.... .....|... + .+..+++++++.+...+.+.. -..+.+.
T Consensus 55 i~~vG~D~g~~i~~~l~~~gI~~~~i~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~i 133 (303)
T TIGR03168 55 TGFLGGFTGEFIEALLAEEGIKNDFVEVKGETRINVKIKESSGEETELNEPGPEISEEELEQLLEKLRELL-ASGDIVVI 133 (303)
T ss_pred EEEeCCchhHHHHHHHHHcCCCceEEECCCCCEEeEEEEeCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-cCCCEEEE
Confidence 45566443 3345889999988775421 001122111 1 233466666665554432210 0245444
Q ss_pred EeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhCCCCCCH
Q 022988 92 TGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSE 171 (289)
Q Consensus 92 ~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g~~~~~~ 171 (289)
.|++....+.+.+.++++.++++ +.++++||+.. . +.+.+..++|+++||+.|++.|+|.+..+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~--g~~v~~D~~~~---------~----~~~~~~~~~dil~~n~~E~~~l~g~~~~~~ 198 (303)
T TIGR03168 134 SGSLPPGVPPDFYAQLIAIARKR--GAKVILDTSGE---------A----LREALAAKPFLIKPNHEELEELFGRELKTE 198 (303)
T ss_pred eCCCCCCCCHHHHHHHHHHHHHC--CCEEEEECCcH---------H----HHHHHhcCCcEECCCHHHHHHHhCCCCCCH
Confidence 46544334567778888888887 89999999421 1 112244589999999999999999877677
Q ss_pred HHHHHHHHHHHhcCCCeEEEeeeecCCcEEEecc-----------cCCCCCchHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 022988 172 ADGREACKILHAAGPAKVVITSINIDGNLFLIGS-----------HQKEKGTGDLMTALLLGWSNKYRDNLDIAAELAVS 240 (289)
Q Consensus 172 ~~~~~a~~~L~~~g~~~Vvvt~g~~~G~~~~~~~-----------~~dt~GAGD~f~g~l~~~l~~~g~~~~~A~~~A~a 240 (289)
+++.++++.+.++|++.|++|+|. +|++++.++ .+|++||||+|+|+|++++.+ |.++++|+++|++
T Consensus 199 ~~~~~~~~~l~~~g~~~vviT~g~-~G~~~~~~~~~~~~~~~~~~~vDttGAGD~F~a~~~~~l~~-g~~i~~a~~~A~~ 276 (303)
T TIGR03168 199 EEIIEAARELLDRGAENVLVSLGA-DGALLVTKEGALKATPPKVEVVNTVGAGDSMVAGFLAGLAR-GLSLEEALRFAVA 276 (303)
T ss_pred HHHHHHHHHHHHcCCCEEEEeecC-CCcEEEeCCceEEeeCCcceeecCcCHHHHHHHHHHHHHHc-CCCHHHHHHHHHH
Confidence 788888899989999999999997 888776532 169999999999999999998 9999999999999
Q ss_pred HHHHHHH
Q 022988 241 SLQALLQ 247 (289)
Q Consensus 241 ~a~~~l~ 247 (289)
+++..++
T Consensus 277 ~aa~~~~ 283 (303)
T TIGR03168 277 AGSAAAF 283 (303)
T ss_pred HHHHHhc
Confidence 8655553
No 44
>PRK09954 putative kinase; Provisional
Probab=99.86 E-value=1.8e-20 Score=173.51 Aligned_cols=195 Identities=17% Similarity=0.105 Sum_probs=133.3
Q ss_pred ccCccchhh----cHHHHHhCCCcceeeceEEeecCCCCC---------Cc---ce----eeCCHHHHHHHHHHHHhCCC
Q 022988 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGYP---------TF---KG----QVLNGQQLCDLIEGLEANNL 84 (289)
Q Consensus 25 ~~G~vG~~~----~~~~l~~~Gv~~~~v~~~~~~~~tg~~---------~i---~g----~~l~~~~~~~~~~~l~~~~~ 84 (289)
+.|.+|+|. ....|++.||+++++.... ...|+.. .+ .+ ..++++.++...+.+..
T Consensus 112 ~ig~VG~D~~G~~i~~~l~~~GVd~~~~~~~~-~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 187 (362)
T PRK09954 112 LLSAIGDDFYGETLLEETRRAGVNVSGCIRLH-GQSTSTYLAIANRQDETVLAINDTHILQQLTPQLLNGSRDLIRH--- 187 (362)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCccceEEcC-CCCCeEEEEEEcCCCCEEEEEcCchhhhcCCHHHHHHHHHHHhc---
Confidence 357788775 3456899999988765432 1122211 00 01 13444444444333443
Q ss_pred cccCEEEEe-ecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHh
Q 022988 85 LYYTHLLTG-YIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQL 163 (289)
Q Consensus 85 ~~~~~v~~G-~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L 163 (289)
.+.+++. .++ .+.+..+++.+ + ++++++||..... .+.++ .+++++|+++||+.|++.|
T Consensus 188 --~~~v~~~~~~~----~~~~~~~~~~a--~--~~~v~~D~~~~~~---------~~~~~-~~l~~~dil~~n~~Ea~~l 247 (362)
T PRK09954 188 --AGVVLADCNLT----AEALEWVFTLA--D--EIPVFVDTVSEFK---------AGKIK-HWLAHIHTLKPTQPELEIL 247 (362)
T ss_pred --CCEEEEECCCC----HHHHHHHHHhC--C--CCcEEEECCCHHH---------hhhhh-hhhccccEEecCHHHHHHH
Confidence 3444443 232 33444444443 2 7899999953210 01122 3788999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCCeEEEeeeecCCcEEEecc------------cCCCCCchHHHHHHHHHHHccCCCCH
Q 022988 164 TGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGS------------HQKEKGTGDLMTALLLGWSNKYRDNL 231 (289)
Q Consensus 164 ~g~~~~~~~~~~~a~~~L~~~g~~~Vvvt~g~~~G~~~~~~~------------~~dt~GAGD~f~g~l~~~l~~~g~~~ 231 (289)
+|.+..+.++..++++.|.+.|++.|+||+|+ +|+++...+ .+|||||||+|+|+|++++.+ |+++
T Consensus 248 ~g~~~~~~~~~~~~~~~l~~~g~~~Vvvt~G~-~G~~~~~~~~~~~~~~~~~v~vvDttGAGDaF~Ag~l~~l~~-g~~~ 325 (362)
T PRK09954 248 WGQAITSDADRNAAVNALHQQGVQQIFVYLPD-ESVFCSEKDGEQFLLTAPAHTTVDSFGADDGFMAGLVYSFLE-GYSF 325 (362)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCC-ccEEEEeCCCceEeccCCCcccccccchHHHHHHHHHHHHHc-CCCH
Confidence 99877666677888999999999999999997 898765421 279999999999999999998 9999
Q ss_pred HHHHHHHHHHHHHH
Q 022988 232 DIAAELAVSSLQAL 245 (289)
Q Consensus 232 ~~A~~~A~a~a~~~ 245 (289)
++|+++|++++..+
T Consensus 326 ~eal~~a~a~Aal~ 339 (362)
T PRK09954 326 RDSARFAMACAAIS 339 (362)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987554
No 45
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=99.86 E-value=6.8e-21 Score=172.63 Aligned_cols=203 Identities=23% Similarity=0.216 Sum_probs=138.8
Q ss_pred ccCccchhh----cHHHHHhCCCcceeeceEEeecCCCCC----------Cc---ce--eeCCHHHHHHHHHHHHhCCCc
Q 022988 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGYP----------TF---KG--QVLNGQQLCDLIEGLEANNLL 85 (289)
Q Consensus 25 ~~G~vG~~~----~~~~l~~~Gv~~~~v~~~~~~~~tg~~----------~i---~g--~~l~~~~~~~~~~~l~~~~~~ 85 (289)
+.|.+|.|. ....|++.||++.++.... .+|+.. .+ .+ ..++++++.. +.+.+.++
T Consensus 74 ~i~~vG~D~~g~~i~~~l~~~GV~~~~~~~~~--~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~--~~l~~~~~- 148 (312)
T cd01168 74 FIGRVGDDKLGDFLLKDLRAAGVDTRYQVQPD--GPTGTCAVLVTPDAERTMCTYLGAANELSPDDLDW--SLLAKAKY- 148 (312)
T ss_pred EEEEeccChhHHHHHHHHHHCCCccccccCCC--CCceEEEEEEcCCCceeeecccchhhcCChhHCCH--HHHccCCE-
Confidence 467788775 3345889999988765321 233311 11 11 2344444432 23443332
Q ss_pred ccCEEEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhC
Q 022988 86 YYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTG 165 (289)
Q Consensus 86 ~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g 165 (289)
.++.|+.... +.+.+..+++.++++ ++++++||+.. +..+...+.+.+ +++++|+++||+.|++.|+|
T Consensus 149 ---v~~~~~~~~~-~~~~~~~~~~~a~~~--g~~v~~d~~~~-----~~~~~~~~~~~~-~l~~~d~l~~n~~E~~~l~~ 216 (312)
T cd01168 149 ---LYLEGYLLTV-PPEAILLAAEHAKEN--GVKIALNLSAP-----FIVQRFKEALLE-LLPYVDILFGNEEEAEALAE 216 (312)
T ss_pred ---EEEEEEecCC-CHHHHHHHHHHHHHc--CCEEEEeCCcH-----HHHHHHHHHHHH-HHhhCCEEEeCHHHHHHHhC
Confidence 2344543221 237788888889887 89999999521 111122233444 78999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEEeeeecCCcEEEecc------------cCCCCCchHHHHHHHHHHHccCCCCHHH
Q 022988 166 FRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGS------------HQKEKGTGDLMTALLLGWSNKYRDNLDI 233 (289)
Q Consensus 166 ~~~~~~~~~~~a~~~L~~~g~~~Vvvt~g~~~G~~~~~~~------------~~dt~GAGD~f~g~l~~~l~~~g~~~~~ 233 (289)
.+. ++..++++.+++.|++.||+|+|. +|++++... .+||+||||+|+|+|++++.+ |+++++
T Consensus 217 ~~~---~~~~~~a~~l~~~g~~~vvvt~G~-~G~~~~~~~~~~~~~~~~~~~vvDttGAGDaf~ag~l~~l~~-g~~~~~ 291 (312)
T cd01168 217 AET---TDDLEAALKLLALRCRIVVITQGA-KGAVVVEGGEVYPVPAIPVEKIVDTNGAGDAFAGGFLYGLVQ-GEPLEE 291 (312)
T ss_pred CCC---CChHHHHHHHHhcCCCEEEEecCC-CCeEEEECCEEEeCCCCCCCCcccCCchHHHHHHHHHHHHHc-CCCHHH
Confidence 632 345567888888899999999997 888775421 269999999999999999998 999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 022988 234 AAELAVSSLQALLQRT 249 (289)
Q Consensus 234 A~~~A~a~a~~~l~~~ 249 (289)
|+++|++++..++++.
T Consensus 292 a~~~a~~~Aa~~v~~~ 307 (312)
T cd01168 292 CIRLGSYAAAEVIQQL 307 (312)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999987777653
No 46
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=99.85 E-value=3.4e-20 Score=166.41 Aligned_cols=200 Identities=21% Similarity=0.275 Sum_probs=143.5
Q ss_pred ccCccchhh----cHHHHHhCCCcceeeceEEeecCCCC----------CCc---ce--eeCCHHHHHHHHHHHHhCCCc
Q 022988 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGY----------PTF---KG--QVLNGQQLCDLIEGLEANNLL 85 (289)
Q Consensus 25 ~~G~vG~~~----~~~~l~~~Gv~~~~v~~~~~~~~tg~----------~~i---~g--~~l~~~~~~~~~~~l~~~~~~ 85 (289)
++|.+|.|. ....|++.||++.++.... ..+|+. ..+ .+ ..+++++++.+.+.+..
T Consensus 50 ~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 124 (293)
T TIGR02152 50 MIGKVGDDAFGDELLENLKSNGIDTEYVGTVK-DTPTGTAFITVDDTGENRIVVVAGANAELTPEDIDAAEALIAE---- 124 (293)
T ss_pred EEEEecCCccHHHHHHHHHHcCCCeeEEEEcC-CCCCceEEEEEcCCCCEEEEEECCcCCcCCHHHHHHHHhhhcc----
Confidence 356777764 3345889999988775432 112221 111 11 24666777765554543
Q ss_pred ccCEEEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhC
Q 022988 86 YYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTG 165 (289)
Q Consensus 86 ~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g 165 (289)
.+.+.+. .+.+.+.+.++++.+|++ ++++++||..... . +...+++++|+++||..|++.|++
T Consensus 125 -~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~v~~D~~~~~~-------~----~~~~~~~~~d~l~~n~~E~~~l~~ 187 (293)
T TIGR02152 125 -SDIVLLQ---LEIPLETVLEAAKIAKKH--GVKVILNPAPAIK-------D----LDDELLSLVDIITPNETEAEILTG 187 (293)
T ss_pred -CCEEEEe---cCCCHHHHHHHHHHHHHc--CCEEEEECCcCcc-------c----chHHHHhcCCEEccCHHHHHHHhC
Confidence 3444332 123356777888888887 8899999964311 0 112378899999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEEeeeecCCcEEEecc-----------cCCCCCchHHHHHHHHHHHccCCCCHHHH
Q 022988 166 FRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGS-----------HQKEKGTGDLMTALLLGWSNKYRDNLDIA 234 (289)
Q Consensus 166 ~~~~~~~~~~~a~~~L~~~g~~~Vvvt~g~~~G~~~~~~~-----------~~dt~GAGD~f~g~l~~~l~~~g~~~~~A 234 (289)
....+.+++.++++.+.++|++.|++|.|+ +|+.++.++ .+||+||||+|+|+|++++.+ |.++++|
T Consensus 188 ~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~-~g~~~~~~~~~~~~~~~~~~~vdt~GAGDaf~Ag~l~~l~~-g~~~~~a 265 (293)
T TIGR02152 188 IEVTDEEDAEKAAEKLLEKGVKNVIITLGS-KGALLVSKDESKLIPAFKVKAVDTTAAGDTFNGAFAVALAE-GKSLEDA 265 (293)
T ss_pred CCCCCcchHHHHHHHHHHcCCCeEEEEeCC-CceEEEeCCceeEccCCCCceeCCCCcHHHHHHHHHHHHHC-CCCHHHH
Confidence 876666778888899988999999999997 888776542 269999999999999999998 9999999
Q ss_pred HHHHHHHHHHHHHH
Q 022988 235 AELAVSSLQALLQR 248 (289)
Q Consensus 235 ~~~A~a~a~~~l~~ 248 (289)
+++|+.++..++++
T Consensus 266 l~~a~~~Aa~~~~~ 279 (293)
T TIGR02152 266 IRFANAAAAISVTR 279 (293)
T ss_pred HHHHHHHHHHHHcc
Confidence 99999987666543
No 47
>PLN02323 probable fructokinase
Probab=99.85 E-value=2.3e-20 Score=170.59 Aligned_cols=207 Identities=16% Similarity=0.110 Sum_probs=136.0
Q ss_pred ccCccchhh----cHHHHHhCCCcceeeceEE---------eecCCCCCCc-----cee--eCCHHHHHHHHHHHHhCCC
Q 022988 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQ---------FSNHTGYPTF-----KGQ--VLNGQQLCDLIEGLEANNL 84 (289)
Q Consensus 25 ~~G~vG~~~----~~~~l~~~Gv~~~~v~~~~---------~~~~tg~~~i-----~g~--~l~~~~~~~~~~~l~~~~~ 84 (289)
+.|.+|+|. ....|++.||+++++.... .....|...+ .+. .+++++++. +.+..
T Consensus 62 ~i~~vG~D~~g~~i~~~L~~~GI~~~~v~~~~~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~--- 136 (330)
T PLN02323 62 FIGKVGDDEFGHMLADILKKNGVNNEGVRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLRESELDL--DLIRK--- 136 (330)
T ss_pred EEEEecCChhHHHHHHHHHHcCCCCcceEEcCCCCceEEEEEECCCCceeEEeecCCchhccCChHHCCh--HHHcc---
Confidence 367888765 3345899999988765321 0011222111 011 244444432 12332
Q ss_pred cccCEEEEeec--CCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCC-hhHHHHHHHhhcCCceEEcCCHHHHH
Q 022988 85 LYYTHLLTGYI--GSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVP-SELVSVYREKVVPVASMLTPNQFEAE 161 (289)
Q Consensus 85 ~~~~~v~~G~l--~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~-~~~~~~l~~~ll~~~dii~pN~~E~~ 161 (289)
++.+..+.+ ..+...+.+..+++.++++ +.++++||+++.. .|.+ +...+.+.. +++++|+++||+.|++
T Consensus 137 --~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~--g~~v~~D~~~~~~--~~~~~~~~~~~~~~-~l~~~dil~~n~~E~~ 209 (330)
T PLN02323 137 --AKIFHYGSISLITEPCRSAHLAAMKIAKEA--GALLSYDPNLRLP--LWPSAEAAREGIMS-IWDEADIIKVSDEEVE 209 (330)
T ss_pred --CCEEEEechhccCchHHHHHHHHHHHHHHc--CCEEEEcCCCChh--hccCHHHHHHHHHH-HHHhCCEEEcCHHHHH
Confidence 333333322 1233345667888889887 8999999987632 3322 223333433 7889999999999999
Q ss_pred HhhCCCCCCHHHHHHHHHHHHhcCCCeEEEeeeecCCcEEEecc-----------cCCCCCchHHHHHHHHHHHccCCCC
Q 022988 162 QLTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGS-----------HQKEKGTGDLMTALLLGWSNKYRDN 230 (289)
Q Consensus 162 ~L~g~~~~~~~~~~~a~~~L~~~g~~~Vvvt~g~~~G~~~~~~~-----------~~dt~GAGD~f~g~l~~~l~~~g~~ 230 (289)
.++|....+.++ +. +++..|++.|++|+|+ +|+++..++ .+||+||||+|+|+|++++.+ |++
T Consensus 210 ~l~g~~~~~~~~---~~-~~~~~g~~~vvvt~G~-~G~~~~~~~~~~~~~~~~v~vvDttGAGDaf~Agfl~~l~~-g~~ 283 (330)
T PLN02323 210 FLTGGDDPDDDT---VV-KLWHPNLKLLLVTEGE-EGCRYYTKDFKGRVEGFKVKAVDTTGAGDAFVGGLLSQLAK-DLS 283 (330)
T ss_pred HHhCCCCccHHH---HH-HHHhcCCCEEEEecCC-CceEEEeCCCceEeCCccCCCCCCCCcHHHHHHHHHHHHHc-CCc
Confidence 999975433222 23 4445789999999997 898876532 279999999999999999998 876
Q ss_pred -------HHHHHHHHHHHHHHHHHHH
Q 022988 231 -------LDIAAELAVSSLQALLQRT 249 (289)
Q Consensus 231 -------~~~A~~~A~a~a~~~l~~~ 249 (289)
+++|+++|++++..++++.
T Consensus 284 ~~~~~~~l~~al~~a~a~Aa~~v~~~ 309 (330)
T PLN02323 284 LLEDEERLREALRFANACGAITTTER 309 (330)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhcc
Confidence 8999999999976666553
No 48
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=99.85 E-value=1.5e-19 Score=159.35 Aligned_cols=214 Identities=20% Similarity=0.145 Sum_probs=141.4
Q ss_pred CCCeEEEEeccCccCccchhhcHHHHHhCCCcceeeceEEeecCCC-----CCCcceeeCCHHHHHHHHHHHHhCCCccc
Q 022988 13 ETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTG-----YPTFKGQVLNGQQLCDLIEGLEANNLLYY 87 (289)
Q Consensus 13 ~~~~vl~i~g~~~~G~vG~~~~~~~l~~~Gv~~~~v~~~~~~~~tg-----~~~i~g~~l~~~~~~~~~~~l~~~~~~~~ 87 (289)
+.|+||+|+|++.+|++|..++...++ .|.....+.+.. +..+ ..++....+..+..+.+...+. .+
T Consensus 7 ~~g~vl~i~Gs~~~~GA~~la~~~a~~-~G~g~vt~~~~~--~~~~~~~~~~pe~i~~~~~~~~~~~~~~~~~-----~~ 78 (254)
T cd01171 7 SRGRVLVIGGSRGYTGAAYLAALAALR-AGAGLVTVATPP--EAAAVIKSYSPELMVHPLLETDIEELLELLE-----RA 78 (254)
T ss_pred CCCeEEEEeCCCCCccHHHHHHHHHHH-HccCEEEEEECH--hhHHHHHhcCceeeEecccccchHHHHhhhc-----cC
Confidence 578999999999999999988877776 465544333221 1111 0111111222222222222222 36
Q ss_pred CEEEEee-cCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhCC
Q 022988 88 THLLTGY-IGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGF 166 (289)
Q Consensus 88 ~~v~~G~-l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g~ 166 (289)
+++++|+ +++. +.+.++++.++++ +.++|+||.... +..... + . .+.+.++++|||..|++.|+|.
T Consensus 79 d~v~ig~gl~~~---~~~~~i~~~~~~~--~~pvVlDa~~~~----~~~~~~-~-~--~~~~~~~iltPn~~E~~~L~g~ 145 (254)
T cd01171 79 DAVVIGPGLGRD---EEAAEILEKALAK--DKPLVLDADALN----LLADEP-S-L--IKRYGPVVLTPHPGEFARLLGA 145 (254)
T ss_pred CEEEEecCCCCC---HHHHHHHHHHHhc--CCCEEEEcHHHH----HhhcCh-h-h--hccCCCEEECCCHHHHHHHhCC
Confidence 7888887 7764 4566777777776 889999994211 111100 0 0 1467899999999999999998
Q ss_pred CCCC-HHHHHHHHHHHHhcCCCeEEEeeeecCCcEEEec--------c---cCCCCCchHHHHHHHHHHHccCCCCHHHH
Q 022988 167 RIGS-EADGREACKILHAAGPAKVVITSINIDGNLFLIG--------S---HQKEKGTGDLMTALLLGWSNKYRDNLDIA 234 (289)
Q Consensus 167 ~~~~-~~~~~~a~~~L~~~g~~~Vvvt~g~~~G~~~~~~--------~---~~dt~GAGD~f~g~l~~~l~~~g~~~~~A 234 (289)
+..+ .++..++++++.+++...|++|+. +.+++.+ . ..+++|+||+|+|++++.+++ |+++.+|
T Consensus 146 ~~~~~~~~~~~~a~~l~~~~~~~vvlkG~---~~~i~~~~~~~~~~~~~~~~~~~~GaGD~lag~iaa~la~-g~~~~eA 221 (254)
T cd01171 146 LVEEIQADRLAAAREAAAKLGATVVLKGA---VTVIADPDGRVYVNPTGNPGLATGGSGDVLAGIIAALLAQ-GLSPLEA 221 (254)
T ss_pred ChhhhhhHHHHHHHHHHHHcCcEEEEcCC---CCEEECCCCcEEEECCCCcccccCchHHHHHHHHHHHHHc-CCCHHHH
Confidence 7544 335667888888887666666642 3333322 1 267899999999999999998 9999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022988 235 AELAVSSLQALLQRTVN 251 (289)
Q Consensus 235 ~~~A~a~a~~~l~~~~~ 251 (289)
+++|+.+...+.+...+
T Consensus 222 ~~~A~~~~~~a~~~~~~ 238 (254)
T cd01171 222 AALAVYLHGLAGDLAAK 238 (254)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999887777765544
No 49
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=99.84 E-value=4.9e-20 Score=166.37 Aligned_cols=138 Identities=18% Similarity=0.177 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEccccccCCCccCCh-hHHHHHHHhhcCCceEEcCCHHHHHHhhCCCCCCHHHHHHHH
Q 022988 100 FLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPS-ELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREAC 178 (289)
Q Consensus 100 ~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~-~~~~~l~~~ll~~~dii~pN~~E~~~L~g~~~~~~~~~~~a~ 178 (289)
..+...++++.++++ +.++++||+++.. .|... ...+.+. .+++++|+++||+.|+..|+|. ++..+++
T Consensus 135 ~~~~~~~~~~~~~~~--~~~v~~D~~~~~~--~~~~~~~~~~~~~-~~l~~~dil~~n~~e~~~l~g~-----~~~~~~~ 204 (304)
T PRK09434 135 SRSTTFEAMRRIKAA--GGFVSFDPNLRED--LWQDEAELRECLR-QALALADVVKLSEEELCFLSGT-----SQLEDAI 204 (304)
T ss_pred HHHHHHHHHHHHHHc--CCEEEECCCCChh--hccCHHHHHHHHH-HHHHhcceeeCCHHHHHHHhCC-----CCHHHHH
Confidence 355667888899987 8999999987643 34332 3333343 3789999999999999999986 2456778
Q ss_pred HHHHh-cCCCeEEEeeeecCCcEEEecc-----------cCCCCCchHHHHHHHHHHHccCCC------CHHHHHHHHHH
Q 022988 179 KILHA-AGPAKVVITSINIDGNLFLIGS-----------HQKEKGTGDLMTALLLGWSNKYRD------NLDIAAELAVS 240 (289)
Q Consensus 179 ~~L~~-~g~~~Vvvt~g~~~G~~~~~~~-----------~~dt~GAGD~f~g~l~~~l~~~g~------~~~~A~~~A~a 240 (289)
+++.+ .|++.|+||.|+ +|++++.++ .+||+||||+|+|+|++++++ |+ ++++|+++|++
T Consensus 205 ~~l~~~~g~~~vvvt~G~-~G~~~~~~~~~~~~~~~~~~~vDttGAGD~f~ag~~~~l~~-g~~~~~~~~~~~a~~~a~~ 282 (304)
T PRK09434 205 YALADRYPIALLLVTLGA-EGVLVHTRGQVQHFPAPSVDPVDTTGAGDAFVAGLLAGLSQ-AGLWTDEAELAEIIAQAQA 282 (304)
T ss_pred HHHHhhcCCcEEEEEecC-CceEEEeCCceeEeCCCCCCCCcCCCchHHHHHHHHHHHHc-CCCccchHHHHHHHHHHHH
Confidence 88876 688999999997 898776542 279999999999999999998 86 89999999999
Q ss_pred HHHHHHHHH
Q 022988 241 SLQALLQRT 249 (289)
Q Consensus 241 ~a~~~l~~~ 249 (289)
++..++++.
T Consensus 283 ~Aa~~v~~~ 291 (304)
T PRK09434 283 CGALATTAK 291 (304)
T ss_pred HHHHHHccc
Confidence 976666543
No 50
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=99.84 E-value=3.1e-20 Score=166.64 Aligned_cols=150 Identities=23% Similarity=0.236 Sum_probs=113.3
Q ss_pred cCEEEEeecC--CHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCC-hhHHHHHHHhhcCCceEEcCCHHHHHHh
Q 022988 87 YTHLLTGYIG--SVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVP-SELVSVYREKVVPVASMLTPNQFEAEQL 163 (289)
Q Consensus 87 ~~~v~~G~l~--~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~-~~~~~~l~~~ll~~~dii~pN~~E~~~L 163 (289)
.+.+.++..+ ++...+.+.++++.+++. ++++++||+++.. .|.. ....+.+.+ +++++|+++||+.|++.|
T Consensus 121 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~v~~d~~~~~~--~~~~~~~~~~~~~~-~l~~~d~l~~n~~E~~~l 195 (295)
T cd01167 121 ADILHFGSIALASEPSRSALLELLEAAKKA--GVLISFDPNLRPP--LWRDEEEARERIAE-LLELADIVKLSDEELELL 195 (295)
T ss_pred CCEEEEechhhccchHHHHHHHHHHHHHHc--CCEEEEcCCCChh--hcCCHHHHHHHHHH-HHHhCCEEEecHHHHHHH
Confidence 4555555432 233356778889999887 8999999975521 2322 122333443 789999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCCeEEEeeeecCCcEEEecc-----------cCCCCCchHHHHHHHHHHHccCCC---
Q 022988 164 TGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGS-----------HQKEKGTGDLMTALLLGWSNKYRD--- 229 (289)
Q Consensus 164 ~g~~~~~~~~~~~a~~~L~~~g~~~Vvvt~g~~~G~~~~~~~-----------~~dt~GAGD~f~g~l~~~l~~~g~--- 229 (289)
+|.+ ...++++.+.+.|++.|++|.|+ +|++++.++ .+||+||||+|+|+|+++|.+ |.
T Consensus 196 ~~~~-----~~~~~~~~l~~~g~~~vvvt~G~-~G~~~~~~~~~~~~~a~~~~vvDttGAGD~f~a~~~~~l~~-g~~~~ 268 (295)
T cd01167 196 FGEE-----DPEEIAALLLLFGLKLVLVTRGA-DGALLYTKGGVGEVPGIPVEVVDTTGAGDAFVAGLLAQLLS-RGLLA 268 (295)
T ss_pred hCCC-----CHHHHHHHHhhcCCCEEEEecCC-cceEEEECCcceeeCCCCcceeeCCCccHHHHHHHHHHHHh-CCccc
Confidence 9863 22345677788899999999997 898876542 279999999999999999998 99
Q ss_pred ----CHHHHHHHHHHHHHHHHHH
Q 022988 230 ----NLDIAAELAVSSLQALLQR 248 (289)
Q Consensus 230 ----~~~~A~~~A~a~a~~~l~~ 248 (289)
++++|+++|++++..++++
T Consensus 269 ~~~~~~~~a~~~a~~~aa~~~~~ 291 (295)
T cd01167 269 LDEDELAEALRFANAVGALTCTK 291 (295)
T ss_pred ccHHHHHHHHHHHHHhhHHHhcc
Confidence 9999999999997766654
No 51
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=99.84 E-value=4.5e-20 Score=173.82 Aligned_cols=205 Identities=17% Similarity=0.137 Sum_probs=136.5
Q ss_pred ccCccchhh----cHHHHHhCCCcceeeceEEeecCCCCCC----------c---cee--eCCHHHHHHHHHHHHhCCCc
Q 022988 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGYPT----------F---KGQ--VLNGQQLCDLIEGLEANNLL 85 (289)
Q Consensus 25 ~~G~vG~~~----~~~~l~~~Gv~~~~v~~~~~~~~tg~~~----------i---~g~--~l~~~~~~~~~~~l~~~~~~ 85 (289)
+.|.+|.|. ....|++.||++..+.... .+||... + .|. .++.+++ ..+.+...++
T Consensus 153 ~ig~VG~D~~G~~i~~~L~~~GVd~~~~~~~~--~~Tg~~~ilv~~~gertii~~~Ga~~~l~~~~~--~~~~i~~adi- 227 (426)
T PLN02813 153 MAGSVGSDPLGDFYRTKLRRANVHFLSQPVKD--GTTGTVIVLTTPDAQRTMLSYQGTSSTVNYDSC--LASAISKSRV- 227 (426)
T ss_pred EEEEeCCChHHHHHHHHHHHcCCcccceecCC--CCceEEEEEEcCCCCceeeeccCchhhCCcccc--CHHHHhcCCE-
Confidence 457888875 4456999999987765321 2333211 1 111 1222222 1223443332
Q ss_pred ccCEEEEeecC-CHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhh
Q 022988 86 YYTHLLTGYIG-SVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLT 164 (289)
Q Consensus 86 ~~~~v~~G~l~-~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~ 164 (289)
+++.|++. .+...+.+.++++.+|++ ++++++||.... ......+.+.+.+++++|++++|+.|+..|+
T Consensus 228 ---v~l~g~~~~~~~~~~~~~~~~~~ak~~--g~~v~~d~s~~~-----~~~~~~~~l~~~ll~~vDil~~Ne~Ea~~l~ 297 (426)
T PLN02813 228 ---LVVEGYLWELPQTIEAIAQACEEAHRA--GALVAVTASDVS-----CIERHRDDFWDVMGNYADILFANSDEARALC 297 (426)
T ss_pred ---EEEEeeecCCCchHHHHHHHHHHHHHc--CCEEEEECCCcc-----hhhhhHHHHHHHHHhcCCEEEeCHHHHHHHh
Confidence 23446542 123357788899999987 899999985321 0011112233346689999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCeEEEeeeecCCcEEEecc-----------cCCCCCchHHHHHHHHHHHccCCC-CHH
Q 022988 165 GFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGS-----------HQKEKGTGDLMTALLLGWSNKYRD-NLD 232 (289)
Q Consensus 165 g~~~~~~~~~~~a~~~L~~~g~~~Vvvt~g~~~G~~~~~~~-----------~~dt~GAGD~f~g~l~~~l~~~g~-~~~ 232 (289)
|.... ++..++++.|. .+++.|+||+|. +|+++..++ .+||+||||+|+|+|++++.+ |+ +++
T Consensus 298 g~~~~--~~~~~a~~~L~-~~~~~VVVT~G~-~Ga~~~~~~~~~~~pa~~v~vVDTtGAGDAF~Agfl~~l~~-G~~~l~ 372 (426)
T PLN02813 298 GLGSE--ESPESATRYLS-HFCPLVSVTDGA-RGSYIGVKGEAVYIPPSPCVPVDTCGAGDAYAAGILYGLLR-GVSDLR 372 (426)
T ss_pred CCCCC--CCHHHHHHHHH-cCCCEEEEEeCC-CCeEEEECCEEEEeCCCCCCcccCCChHHHHHHHHHHHHHc-CCCCHH
Confidence 86422 34556666665 578999999997 898765432 279999999999999999998 99 999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022988 233 IAAELAVSSLQALLQRT 249 (289)
Q Consensus 233 ~A~~~A~a~a~~~l~~~ 249 (289)
+|+++|++++..++++.
T Consensus 373 ~al~~A~a~Aa~~v~~~ 389 (426)
T PLN02813 373 GMGELAARVAATVVGQQ 389 (426)
T ss_pred HHHHHHHHHHHHHHccc
Confidence 99999999987766554
No 52
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]
Probab=99.83 E-value=9.2e-20 Score=165.08 Aligned_cols=201 Identities=24% Similarity=0.329 Sum_probs=137.8
Q ss_pred ccCccchhh----cHHHHHhCCCcceeeceEEeecCCCCC----------Cc---ce---eeCCHHHHHHHHHHHHhCCC
Q 022988 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGYP----------TF---KG---QVLNGQQLCDLIEGLEANNL 84 (289)
Q Consensus 25 ~~G~vG~~~----~~~~l~~~Gv~~~~v~~~~~~~~tg~~----------~i---~g---~~l~~~~~~~~~~~l~~~~~ 84 (289)
.+|.+|+|. ....|++.||+++++..... .+||.. .+ .+ ..+++++++. ..+...++
T Consensus 56 ~~~~vG~D~~g~~~~~~l~~~GVd~~~~~~~~~-~~tg~~~i~~~~~g~r~~~~~~~~a~~~~~~~~~~~--~~~~~~~~ 132 (311)
T COG0524 56 LIGAVGDDDFGEFLLEELRKEGVDTSHVVTDEG-ATTGLALILVDEDGERTFVFYRGAAALLLTPEDLDE--DELAGADV 132 (311)
T ss_pred EEEEecCcHHHHHHHHHHHHcCCccceEEEcCC-CcceEEEEEEcCCCceeEEEECCcccccCChHHcCh--HHHhhcCe
Confidence 467888776 44558999999988866541 233321 11 11 1244555442 22333332
Q ss_pred cccCEEEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhh
Q 022988 85 LYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLT 164 (289)
Q Consensus 85 ~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~ 164 (289)
++ +.+..... +.+.+.++++.++++ +.++++|++++.. .|. .+.+. .+++++|++++|+.|++.|+
T Consensus 133 ~~----~~~~~l~~-~~~~~~~~~~~a~~~--g~~v~~d~~~~~~--~~~----~~~~~-~~l~~~d~~~~n~~E~~~l~ 198 (311)
T COG0524 133 LH----ISGIQLEI-PPEALLAALELAKAA--GVTVSFDLNPRPA--LWD----RELLE-ELLALADILFPNEEEAELLT 198 (311)
T ss_pred ee----EEEeecCC-ChHHHHHHHHHHHHc--CCeEEEecCCCcc--ccc----hhhHH-HHHhhCCEEeCCHHHHHHHh
Confidence 22 22322221 227888899999988 8999999988753 121 22333 38899999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCeEEEeeeecCCcEEEecc--------------cCCCCCchHHHHHHHHHHHccCCCC
Q 022988 165 GFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGS--------------HQKEKGTGDLMTALLLGWSNKYRDN 230 (289)
Q Consensus 165 g~~~~~~~~~~~a~~~L~~~g~~~Vvvt~g~~~G~~~~~~~--------------~~dt~GAGD~f~g~l~~~l~~~g~~ 230 (289)
|. . ++..++...++..|++.|++|.|+ +|+++.... .+|||||||+|.|+|++++.+ |++
T Consensus 199 g~-~---~~~~~~~~~~~~~~~~~vvvt~G~-~Ga~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~agfl~~~~~-g~~ 272 (311)
T COG0524 199 GL-E---EDAEAAAALLLAKGVKTVVVTLGA-EGAVVFTGGGEVTVPVPAAFKVKVVDTTGAGDAFAAGFLAGLLE-GKS 272 (311)
T ss_pred CC-C---ccHHHHHHHHhhcCCCEEEEEeCC-CcEEEEeCCCceeeccCCCCccccccCCCchHHHHHHHHHHHHc-CCC
Confidence 96 1 233333466778899999999997 888776641 179999999999999999998 999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022988 231 LDIAAELAVSSLQALLQR 248 (289)
Q Consensus 231 ~~~A~~~A~a~a~~~l~~ 248 (289)
+++|+++|+++++.++++
T Consensus 273 ~~~a~~~a~a~aa~~~~~ 290 (311)
T COG0524 273 LEEALRFANAAAALAVTR 290 (311)
T ss_pred HHHHHHHHHHHhhhhhcc
Confidence 999999999775554433
No 53
>PLN02548 adenosine kinase
Probab=99.83 E-value=1.5e-19 Score=165.28 Aligned_cols=207 Identities=17% Similarity=0.162 Sum_probs=132.8
Q ss_pred ccCccchhh----cHHHHHhCCCcceeeceEEeecCCCCCCc---ce-----------eeCCHHHHHH--HHHHHHhCCC
Q 022988 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGYPTF---KG-----------QVLNGQQLCD--LIEGLEANNL 84 (289)
Q Consensus 25 ~~G~vG~~~----~~~~l~~~Gv~~~~v~~~~~~~~tg~~~i---~g-----------~~l~~~~~~~--~~~~l~~~~~ 84 (289)
+.|.+|+|. ....|++.||+++++... ...|+...+ .| ..++.+++.. ..+.+..
T Consensus 74 ~ig~vG~D~~g~~i~~~L~~~gVd~~~~~~~--~~~T~~~~i~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 148 (332)
T PLN02548 74 YMGCIGKDKFGEEMKKCATAAGVNVHYYEDE--STPTGTCAVLVVGGERSLVANLSAANCYKVEHLKKPENWALVEK--- 148 (332)
T ss_pred EEEEEcCChhHHHHHHHHHHcCCceeeeccC--CCCCceEEEEEecCCceeeeccchhhcCCHHHhcChhhHhHHhh---
Confidence 467888776 445589999998876431 123332111 01 0133333321 1222333
Q ss_pred cccCEE-EEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHh
Q 022988 85 LYYTHL-LTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQL 163 (289)
Q Consensus 85 ~~~~~v-~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L 163 (289)
.+.+ +.|+.+. .+.+.+..+++.++++ +.++++|+.. ..|.+ ...+.+++ +++++|+++||+.|++.|
T Consensus 149 --~~~v~~~g~~~~-~~~~~~~~~~~~a~~~--g~~~~~~~~~----~~~~~-~~~~~l~~-~l~~~dil~~n~~E~~~l 217 (332)
T PLN02548 149 --AKFYYIAGFFLT-VSPESIMLVAEHAAAN--NKTFMMNLSA----PFICE-FFKDQLME-ALPYVDFLFGNETEARTF 217 (332)
T ss_pred --CCEEEEEEEEcc-CCHHHHHHHHHHHHHc--CCEEEEECCC----hhHHH-HhHHHHHH-HHhhCCEEEecHHHHHHH
Confidence 3333 3454332 2345677788888887 7777777631 12221 12233444 788999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHh----c--CCCeEEEeeeecCCcEEEecc--------------cCCCCCchHHHHHHHHHH
Q 022988 164 TGFRIGSEADGREACKILHA----A--GPAKVVITSINIDGNLFLIGS--------------HQKEKGTGDLMTALLLGW 223 (289)
Q Consensus 164 ~g~~~~~~~~~~~a~~~L~~----~--g~~~Vvvt~g~~~G~~~~~~~--------------~~dt~GAGD~f~g~l~~~ 223 (289)
+|....+.++..++++.+.+ . |++.|++|.|+ +|+++..++ .+||+||||+|+|+|+++
T Consensus 218 ~g~~~~~~~~~~~~~~~l~~~~~~~g~~~~~vvvT~G~-~G~~~~~~~~~~~~pa~~~~~~~vvDttGAGDaF~ag~l~~ 296 (332)
T PLN02548 218 AKVQGWETEDVEEIALKISALPKASGTHKRTVVITQGA-DPTVVAEDGKVKEFPVIPLPKEKLVDTNGAGDAFVGGFLSQ 296 (332)
T ss_pred hCccCCCcccHHHHHHHHHHhhhhccccCCEEEEEeCC-CcEEEEECCeEEEeccccCCcCccccCCCchHHHHHHHHHH
Confidence 98654333444455544443 2 57899999997 888764321 279999999999999999
Q ss_pred HccCCCCHHHHHHHHHHHHHHHHHHH
Q 022988 224 SNKYRDNLDIAAELAVSSLQALLQRT 249 (289)
Q Consensus 224 l~~~g~~~~~A~~~A~a~a~~~l~~~ 249 (289)
+.+ |+++++|+++|+++++.++++.
T Consensus 297 l~~-g~~l~eal~~a~aaAa~~v~~~ 321 (332)
T PLN02548 297 LVQ-GKDIEECVRAGNYAANVIIQRS 321 (332)
T ss_pred HHc-CCCHHHHHHHHHHHHHHHHhcc
Confidence 998 9999999999999987776653
No 54
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.83 E-value=9.1e-20 Score=163.39 Aligned_cols=200 Identities=19% Similarity=0.166 Sum_probs=132.6
Q ss_pred ccCccchhh----cHHHHHhCCCcceeeceEEeecCC----------CCCCc---ce--eeCCHHHHHHHHHHHHhCCCc
Q 022988 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHT----------GYPTF---KG--QVLNGQQLCDLIEGLEANNLL 85 (289)
Q Consensus 25 ~~G~vG~~~----~~~~l~~~Gv~~~~v~~~~~~~~t----------g~~~i---~g--~~l~~~~~~~~~~~l~~~~~~ 85 (289)
++|.+|.|. ....|++.||+++++.... .+| |...+ .+ ..+++++++.. .+.
T Consensus 54 ~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~--~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~--~~~----- 124 (289)
T cd01944 54 NAGPLGNGNWADQIRQAMRDEGIEILLPPRGG--DDGGCLVALVEPDGERSFISISGAEQDWSTEWFATL--TVA----- 124 (289)
T ss_pred EEEEecCChHHHHHHHHHHHcCCccccccccC--CCCeEEEEEEcCCCceEEEEeCCccCCCCHHHhccc--cCC-----
Confidence 467788766 3455899999998765431 222 22111 11 12333333321 122
Q ss_pred ccCEE-EEeecC--CHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHH
Q 022988 86 YYTHL-LTGYIG--SVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQ 162 (289)
Q Consensus 86 ~~~~v-~~G~l~--~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~ 162 (289)
..+.+ +.|+.. .....+.+.++++..+ . +.++++||+++.. .| ..+ .+. .+++++|+++||++|++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~v~~D~~~~~~--~~-~~~---~~~-~~l~~~d~~~~n~~E~~~ 194 (289)
T cd01944 125 PYDYVYLSGYTLASENASKVILLEWLEALP-A--GTTLVFDPGPRIS--DI-PDT---ILQ-ALMAKRPIWSCNREEAAI 194 (289)
T ss_pred CCCEEEEeCccccCcchhHHHHHHHHHhcc-C--CCEEEEcCccccc--cc-CHH---HHH-HHHhcCCEEccCHHHHHH
Confidence 24443 344422 2224556667776654 3 6889999987642 11 222 223 378899999999999999
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCCCeEEEeeeecCCcEEEe-cc-----------cCCCCCchHHHHHHHHHHHccCCCC
Q 022988 163 LTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLI-GS-----------HQKEKGTGDLMTALLLGWSNKYRDN 230 (289)
Q Consensus 163 L~g~~~~~~~~~~~a~~~L~~~g~~~Vvvt~g~~~G~~~~~-~~-----------~~dt~GAGD~f~g~l~~~l~~~g~~ 230 (289)
|+|.... +...+++++.+.|++.|++|.|+ +|+++.. ++ .+||+||||+|+|+|++++.+ |++
T Consensus 195 l~g~~~~---~~~~~~~~~~~~~~~~vvvt~G~-~Ga~~~~~~~~~~~~~~~~~~vvDt~GAGDaf~ag~l~~~~~-g~~ 269 (289)
T cd01944 195 FAERGDP---AAEASALRIYAKTAAPVVVRLGS-NGAWIRLPDGNTHIIPGFKVKAVDTIGAGDTHAGGMLAGLAK-GMS 269 (289)
T ss_pred HhCCCCc---chHHHHHHHHhccCCeEEEEECC-CcEEEEecCCCeEEecCCCCCCccCCCchHHHHHHHHHHHHc-CCC
Confidence 9996432 22244677778899999999997 8887665 21 169999999999999999998 999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022988 231 LDIAAELAVSSLQALLQR 248 (289)
Q Consensus 231 ~~~A~~~A~a~a~~~l~~ 248 (289)
+++|+++|++++...+++
T Consensus 270 ~~~a~~~a~a~aa~~~~~ 287 (289)
T cd01944 270 LADAVLLANAAAAIVVTR 287 (289)
T ss_pred HHHHHHHHHHHHHhhhcc
Confidence 999999999998766654
No 55
>PRK15074 inosine/guanosine kinase; Provisional
Probab=99.83 E-value=1.2e-19 Score=170.52 Aligned_cols=203 Identities=19% Similarity=0.118 Sum_probs=137.7
Q ss_pred CccCccchh-h----cHHHHH--hCCCcceeeceEEeecCCCCCCc----ce-----------eeCCHHHHHHHHHHHHh
Q 022988 24 TVQGYVGNK-S----AVFPLQ--LLGYDVDPIHSVQFSNHTGYPTF----KG-----------QVLNGQQLCDLIEGLEA 81 (289)
Q Consensus 24 ~~~G~vG~~-~----~~~~l~--~~Gv~~~~v~~~~~~~~tg~~~i----~g-----------~~l~~~~~~~~~~~l~~ 81 (289)
.++|+||.| . ....|+ +.||++.++.... .+||...+ .| ..+++++++. +.+..
T Consensus 111 ~fig~VGdDd~~G~~~~~~L~~~~~GVdt~~v~~~~--~~TG~~~VlV~~dGeRt~~t~~GA~~~Lt~edld~--~~i~~ 186 (434)
T PRK15074 111 VLLGVMSSNIEIGSYAYRYLCNTSSRTDLNYLQGVD--GPIGRCFTLISEDGERTFAISPGHMNQLRPESIPE--DVIAG 186 (434)
T ss_pred EEEEEeCCCHHHHHHHHHHhhhhhCCccCcceEEcC--CCCEEEEEEECCCCCEEEEEecChhhcCChhHCCH--hHhcc
Confidence 357899977 3 234465 5899988774332 24542211 11 1344555442 23443
Q ss_pred CCCcccCEEEEeecCC----HhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCH
Q 022988 82 NNLLYYTHLLTGYIGS----VSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQ 157 (289)
Q Consensus 82 ~~~~~~~~v~~G~l~~----~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~ 157 (289)
.+++ .+.|++.. +...+++.++++.++++ |++|++||+.+.. .+..+ +.+...+++++|++++|+
T Consensus 187 a~il----yl~Gy~l~~~~~~~~~~a~~~al~~Ake~--G~~VslD~s~~~~--v~~~~---~~~~e~l~~~vDILf~Ne 255 (434)
T PRK15074 187 ASAL----VLTAYLVRCKPGEPMPEATMKAIEYAKKH--NVPVVLTLGTKFV--IEDNP---QWWQEFLKEHVSILAMNE 255 (434)
T ss_pred CCEE----EEeeeehhcccCCCcHHHHHHHHHHHHHc--CCEEEEECcchhh--ccccH---HHHHHHHHhcCCEEEcCH
Confidence 3332 24465422 12356788899999988 9999999976521 01111 122233567999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCCeEEEeeeecCCcEEEe--c-------------------------------
Q 022988 158 FEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLI--G------------------------------- 204 (289)
Q Consensus 158 ~E~~~L~g~~~~~~~~~~~a~~~L~~~g~~~Vvvt~g~~~G~~~~~--~------------------------------- 204 (289)
+|+..|+|. ++.+++++.|.+ +++.|+||.|+ +|+++.. .
T Consensus 256 eEa~~LtG~-----~d~eea~~~L~~-~~~~VVVTlG~-~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (434)
T PRK15074 256 DEAEALTGE-----SDPLLASDKALD-WVDLVLCTAGP-IGLYMAGYTEDEAKRETQHPLLPGAIAEFNRYEFSRAMRKK 328 (434)
T ss_pred HHHHHHhCC-----CCHHHHHHHHHc-CCCEEEEEECC-CCEEEEecccccccCceeeeccccccccccchhcccchhcc
Confidence 999999985 244566777765 57899999997 8987743 0
Q ss_pred --------------------ccCCCCCchHHHHHHHHHHHccCCC--------------------CHHHHHHHHHHHHHH
Q 022988 205 --------------------SHQKEKGTGDLMTALLLGWSNKYRD--------------------NLDIAAELAVSSLQA 244 (289)
Q Consensus 205 --------------------~~~dt~GAGD~f~g~l~~~l~~~g~--------------------~~~~A~~~A~a~a~~ 244 (289)
..+|||||||+|+|+|+++|.+ |+ ++.+|+++|+.+++.
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~vDttGAGD~f~~gfl~~l~~-g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~ 407 (434)
T PRK15074 329 DCQNPLRVYSHIAPYMGGPEKIMNTNGAGDGALSALLHDITA-NSYHRSNVPNSSKHKRTYLTYSSLAQVCKYANRVSYE 407 (434)
T ss_pred ccccccccccccCcccCCCCcceeCCCcHHHHHHHHHHHHHC-CCcccccccccccccccccccCCHHHHHHHHHHHHHH
Confidence 1269999999999999999998 87 899999999999888
Q ss_pred HHHHH
Q 022988 245 LLQRT 249 (289)
Q Consensus 245 ~l~~~ 249 (289)
++++.
T Consensus 408 vi~~~ 412 (434)
T PRK15074 408 VLNQH 412 (434)
T ss_pred HHhhc
Confidence 88766
No 56
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.81 E-value=8.2e-19 Score=156.90 Aligned_cols=198 Identities=21% Similarity=0.222 Sum_probs=133.5
Q ss_pred ccCccchhh----cHHHHHhCCCcceeeceEEeecCCCCCCc----cee------------eCCHHHHHHHHHHHHhCCC
Q 022988 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGYPTF----KGQ------------VLNGQQLCDLIEGLEANNL 84 (289)
Q Consensus 25 ~~G~vG~~~----~~~~l~~~Gv~~~~v~~~~~~~~tg~~~i----~g~------------~l~~~~~~~~~~~l~~~~~ 84 (289)
.+|.+|.|. ..+.|++.||++..+. .. ...|+.... .|. .++.+.++...+.+..
T Consensus 54 ~~~~lG~D~~g~~i~~~L~~~gI~~~~~~-~~-~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--- 128 (288)
T cd01941 54 LLSAVGDDSEGESILEESEKAGLNVRGIV-FE-GRSTASYTAILDKDGDLVVALADMDIYELLTPDFLRKIREALKE--- 128 (288)
T ss_pred EEEEEecCccHHHHHHHHHHcCCccceee-eC-CCCcceEEEEECCCCCEEEEEechHhhhhCCHHHHHHHHHHHhc---
Confidence 357777765 3356899999998775 21 123332110 011 1222223333333443
Q ss_pred cccCEEEE-eecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHh
Q 022988 85 LYYTHLLT-GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQL 163 (289)
Q Consensus 85 ~~~~~v~~-G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L 163 (289)
.+.+.+ |.. +.+.+.++++.++++ +.++++||..... .. + +. .+++++|+++||+.|++.+
T Consensus 129 --~~~v~~~~~~----~~~~~~~~~~~a~~~--~~~v~~d~~~~~~----~~----~-~~-~~~~~~dii~~n~~E~~~~ 190 (288)
T cd01941 129 --AKPIVVDANL----PEEALEYLLALAAKH--GVPVAFEPTSAPK----LK----K-LF-YLLHAIDLLTPNRAELEAL 190 (288)
T ss_pred --CCEEEEeCCC----CHHHHHHHHHhhhhc--CCcEEEEccchHH----hc----c-ch-hhcccceEEeCCHHHHHHH
Confidence 344433 332 234666778888877 8899999954311 00 0 01 3788999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCCeEEEeeeecCCcEEEec---c------------cCCCCCchHHHHHHHHHHHccCC
Q 022988 164 TGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIG---S------------HQKEKGTGDLMTALLLGWSNKYR 228 (289)
Q Consensus 164 ~g~~~~~~~~~~~a~~~L~~~g~~~Vvvt~g~~~G~~~~~~---~------------~~dt~GAGD~f~g~l~~~l~~~g 228 (289)
+|....+.+...++++.+.+.|++.|++|.|+ +|++++.. . .+||+||||+|.|+|++++++ |
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~vvit~G~-~Ga~~~~~~~~~~~~~~~~~~~~~~vDttGAGDaf~a~~~~~l~~-g 268 (288)
T cd01941 191 AGALIENNEDENKAAKILLLPGIKNVIVTLGA-KGVLLSSREGGVETKLFPAPQPETVVNVTGAGDAFVAGLVAGLLE-G 268 (288)
T ss_pred hCcccCCchhHHHHHHHHHHcCCcEEEEEeCC-CcEEEEecCCCceeEEecCCCCccceeCCCcHHHHHHHHHHHHHc-C
Confidence 99765444445556777788899999999997 88876553 1 168999999999999999998 9
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 022988 229 DNLDIAAELAVSSLQALLQ 247 (289)
Q Consensus 229 ~~~~~A~~~A~a~a~~~l~ 247 (289)
+++++|+++|+++++.+++
T Consensus 269 ~~~~~al~~a~~~Aa~~~~ 287 (288)
T cd01941 269 MSLDDSLRFAQAAAALTLE 287 (288)
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 9999999999999876653
No 57
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=99.81 E-value=1.2e-19 Score=163.04 Aligned_cols=206 Identities=25% Similarity=0.286 Sum_probs=140.2
Q ss_pred ccCccchhh----cHHHHHhCCCcceeeceEEe---------ecCCCCCCc---ce--eeCCHHHHHHHHHHHHhCCCcc
Q 022988 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQF---------SNHTGYPTF---KG--QVLNGQQLCDLIEGLEANNLLY 86 (289)
Q Consensus 25 ~~G~vG~~~----~~~~l~~~Gv~~~~v~~~~~---------~~~tg~~~i---~g--~~l~~~~~~~~~~~l~~~~~~~ 86 (289)
.+|.+|+|. ....|++.||+++++....- ....|...+ .+ ...+.+++ ..+.+.+.++
T Consensus 55 ~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~-- 130 (301)
T PF00294_consen 55 LIGKVGDDFFGEIILEELKERGVDTSYIPRDGDEPTGRCLIIVDPDGERTFVFSPGANSDLTPDEL--DEEAIDEADI-- 130 (301)
T ss_dssp EEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEEEETTSEEEEEEEEGGGGGGGHHHH--HHHHHHTESE--
T ss_pred EEeeccCcchhhhhhhccccccccccccccccccccceeEeeecccccceeeeccccccccccccc--cccccccccc--
Confidence 356777766 33458899999987764320 011121111 11 12333333 3334554332
Q ss_pred cCEEEEe-ecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhC
Q 022988 87 YTHLLTG-YIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTG 165 (289)
Q Consensus 87 ~~~v~~G-~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g 165 (289)
..+.| .++...+.+.+..+.+.+++. + + +||++.+. ......+.+.+ +++.+|+++||+.|++.|++
T Consensus 131 --~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~--~~~~~~~~----~~~~~~~~~~~-~l~~~dil~~n~~E~~~l~~ 198 (301)
T PF00294_consen 131 --LHLSGVSLPEGIPEDLLEALAKAAKKN--G-P--FDPVFRDP----SWDDLREDLKE-LLPYADILKPNEEEAEALTG 198 (301)
T ss_dssp --EEEESGHCSTTSHHHHHHHHHHHHHHT--T-E--EEEEEEGG----GSHHHHHHHHH-HHHTSSEEEEEHHHHHHHHT
T ss_pred --eeecccccccccccceeeecccccccc--c-c--cccccccc----cccccchhhhh-hccccchhcccccccccccc
Confidence 23445 466656666777777777665 4 1 44444322 11113344544 67999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEEeeeecCCcEEEecc------------cCCCCCchHHHHHHHHHHHccCCCCHHH
Q 022988 166 FRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGS------------HQKEKGTGDLMTALLLGWSNKYRDNLDI 233 (289)
Q Consensus 166 ~~~~~~~~~~~a~~~L~~~g~~~Vvvt~g~~~G~~~~~~~------------~~dt~GAGD~f~g~l~~~l~~~g~~~~~ 233 (289)
....+.+++.++++++++.|++.|++|.|. +|++++..+ .+|++||||+|.|+|++++.+ |.++++
T Consensus 199 ~~~~~~~~~~~~~~~l~~~g~~~vivt~G~-~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~A~~i~~l~~-~~~~~~ 276 (301)
T PF00294_consen 199 SKIDDPEDALAALRELQARGVKIVIVTLGE-DGALYYTNDESYHVPPVPPVNVVDTTGAGDAFAAGFIYGLLS-GMSLEE 276 (301)
T ss_dssp CSTSSHHHHHHHHHHHHHTTSSEEEEEEGG-GEEEEEETTEEEEEEEESSSSSSSCTTHHHHHHHHHHHHHHT-THHHHH
T ss_pred ccccchhhhhccccccchhhhhhhhccccc-cCcccccccccccccccccccccceeccchhhhHHHHHHHHc-CCCHHH
Confidence 987778888899999998999999999997 888877532 279999999999999999998 999999
Q ss_pred HHHHHHHHHHHHHHH
Q 022988 234 AAELAVSSLQALLQR 248 (289)
Q Consensus 234 A~~~A~a~a~~~l~~ 248 (289)
|+++|+++++.++++
T Consensus 277 a~~~a~~~aa~~v~~ 291 (301)
T PF00294_consen 277 ALKFANAAAALKVQQ 291 (301)
T ss_dssp HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999997666644
No 58
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=99.80 E-value=1.1e-18 Score=161.78 Aligned_cols=201 Identities=18% Similarity=0.119 Sum_probs=132.6
Q ss_pred ccCccchhh----cHHHHHhCCCcceeeceEEeecCCCCCCc----ce-----------eeCCHHHHHHHHHHHHhCCCc
Q 022988 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGYPTF----KG-----------QVLNGQQLCDLIEGLEANNLL 85 (289)
Q Consensus 25 ~~G~vG~~~----~~~~l~~~Gv~~~~v~~~~~~~~tg~~~i----~g-----------~~l~~~~~~~~~~~l~~~~~~ 85 (289)
++|.+|.|. ....|++.||++..+.... .+|+...+ .| ..++.+++. .+.+..
T Consensus 106 ~ig~VG~D~~G~~~~~~L~~~GI~~~~~~~~~--~~Tg~~~v~v~~dgert~~~~lg~~~~l~~~~~~--~~~~~~---- 177 (367)
T PLN02379 106 IIGACGDDEQGKLFVSNMGFSGVDLSRLRAKK--GPTAQCVCLVDALGNRTMRPCLSSAVKLQADELT--KEDFKG---- 177 (367)
T ss_pred EEEEeCCChhHHHHHHHHHHcCCCccCcccCC--CCCceEEEEECCCCCccccCCccccccCChhHCC--HHHHhc----
Confidence 568899776 3345899999987663321 23332110 01 122223322 123333
Q ss_pred ccCEEEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhc--CCceEEcCCHHHHHHh
Q 022988 86 YYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVV--PVASMLTPNQFEAEQL 163 (289)
Q Consensus 86 ~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll--~~~dii~pN~~E~~~L 163 (289)
.+.+.+.+.. .+.+.+.++++.+|++ ++++++|+... +......+.+.+ ++ .++|++++|+.|++.|
T Consensus 178 -~~~v~v~~~~--~~~~~~~~~~~~A~~~--g~~v~lD~s~~-----~~v~~~r~~l~~-ll~~~~vDilf~Ne~Ea~~l 246 (367)
T PLN02379 178 -SKWLVLRYGF--YNLEVIEAAIRLAKQE--GLSVSLDLASF-----EMVRNFRSPLLQ-LLESGKIDLCFANEDEAREL 246 (367)
T ss_pred -CCEEEEEccc--CCHHHHHHHHHHHHHc--CCEEEEeccch-----hhhhhhhHHHHH-HhhcCCccEEEcCHHHHHHH
Confidence 4444444322 2356788889999987 99999999431 111111222333 45 4899999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCCeEEEeeeecCCcEEEecc------------cCCCCCchHHHHHHHHHHHccCCCCH
Q 022988 164 TGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGS------------HQKEKGTGDLMTALLLGWSNKYRDNL 231 (289)
Q Consensus 164 ~g~~~~~~~~~~~a~~~L~~~g~~~Vvvt~g~~~G~~~~~~~------------~~dt~GAGD~f~g~l~~~l~~~g~~~ 231 (289)
++.... ++.+++.+. ++.+++.|+||.|+ +|++++.++ .+||+||||+|+|+|++++.+ |+++
T Consensus 247 ~~~~~~--~~~~~~~~~-l~~~~~~vvvT~G~-~Ga~~~~~~~~~~v~a~~~~~vVDTtGAGDaFaagfl~gl~~-G~~l 321 (367)
T PLN02379 247 LRGEQE--SDPEAALEF-LAKYCNWAVVTLGS-KGCIARHGKEVVRVPAIGETNAVDATGAGDLFASGFLYGLIK-GLSL 321 (367)
T ss_pred hcCCCC--CCHHHHHHH-HHhcCCEEEEEECC-CCeEEEECCEEEEecCCCCCCcccCCChhHHHHHHHHHHHHC-CCCH
Confidence 975321 234444444 45578999999997 898776532 269999999999999999998 9999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022988 232 DIAAELAVSSLQALLQRT 249 (289)
Q Consensus 232 ~~A~~~A~a~a~~~l~~~ 249 (289)
++|+++|++++..++++.
T Consensus 322 ~~a~~~g~~aAa~vi~~~ 339 (367)
T PLN02379 322 EECCKVGACSGGSVVRAL 339 (367)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999987777665
No 59
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=99.80 E-value=2.4e-18 Score=164.66 Aligned_cols=128 Identities=22% Similarity=0.250 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhCCCCCCHHHHHHHHHH
Q 022988 101 LNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKI 180 (289)
Q Consensus 101 ~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g~~~~~~~~~~~a~~~ 180 (289)
.+.+.++++.++++ ++++++||.... + ..++.+|+++||+.|++.|+|. ..+.++..+.+++
T Consensus 157 ~~~~~~~~~~~k~~--g~~vv~Dp~~~~----~-----------~~~~~~dil~pN~~Ea~~l~g~-~~~~~~~~~~~~~ 218 (473)
T PRK11316 157 LASVQAMIQLARKA--GVPVLIDPKGTD----F-----------ERYRGATLLTPNLSEFEAVVGK-CKDEAELVEKGMK 218 (473)
T ss_pred hhHHHHHHHHHHhc--CCeEEEeCCCCC----c-----------cccCCCeEECcCHHHHHHHhCC-CCCHHHHHHHHHH
Confidence 35577888888887 899999995321 1 1467899999999999999995 2344556666666
Q ss_pred HH-hcCCCeEEEeeeecCCcEEEecc------------cCCCCCchHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHH
Q 022988 181 LH-AAGPAKVVITSINIDGNLFLIGS------------HQKEKGTGDLMTALLLGWSNKYRDNLDIAAELAVSSLQALLQ 247 (289)
Q Consensus 181 L~-~~g~~~Vvvt~g~~~G~~~~~~~------------~~dt~GAGD~f~g~l~~~l~~~g~~~~~A~~~A~a~a~~~l~ 247 (289)
++ ++|++.|+||+|. +|++++..+ .+||+||||+|+|+|+++|++ |+++++|+++|++++..+++
T Consensus 219 l~~~~g~~~vvVT~G~-~G~~~~~~~~~~~~~~~~~v~vvDttGAGDaF~aa~~~~l~~-g~~~~~al~~A~a~Aa~~v~ 296 (473)
T PRK11316 219 LIADYDLSALLVTRSE-QGMTLLQPGKAPLHLPTQAREVYDVTGAGDTVISVLAAALAA-GNSLEEACALANAAAGVVVG 296 (473)
T ss_pred HHHhcCCCEEEEEecC-CCcEEEecCCceEEecCcCCCCCCCCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhhcc
Confidence 65 6899999999997 888765421 168999999999999999998 99999999999988655553
Q ss_pred H
Q 022988 248 R 248 (289)
Q Consensus 248 ~ 248 (289)
.
T Consensus 297 ~ 297 (473)
T PRK11316 297 K 297 (473)
T ss_pred c
Confidence 3
No 60
>cd01943 MAK32 MAK32 kinase. MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.
Probab=99.80 E-value=2.1e-18 Score=157.71 Aligned_cols=139 Identities=13% Similarity=0.118 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHh------cCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhCCCCCCHHHH
Q 022988 101 LNTILQVVEKLRS------INPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADG 174 (289)
Q Consensus 101 ~~~~~~~l~~~k~------~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g~~~~~~~~~ 174 (289)
.+...++++.+++ . +.++++||.+.. ..+...+.+.. +++++|+++||++|++.|+|....+.+..
T Consensus 134 ~~~~~~~~~~a~~~~~d~~~--g~~~~~d~~~~~-----~~~~~~~~l~~-~l~~~dil~~n~~Ea~~l~g~~~~~~~~~ 205 (328)
T cd01943 134 ASIVDDIINLFKLLKGNSPT--RPKIVWEPLPDS-----CDPENLEDLLQ-ALPRVDVFSPNLEEAARLLGLPTSEPSSD 205 (328)
T ss_pred HHHHHHHHHHHHhhccccCC--ccEEEEecCCcc-----cChhhHHHHHH-HhccCCEECCCHHHHHHHhCCCCCCccch
Confidence 3677888888887 5 778999986431 11112233444 89999999999999999999754322111
Q ss_pred HHHH-----H---HHHhcCCCeEEEeeeecCCcEEEe--cc--------------cCCCCCchHHHHHHHHHHHccCCCC
Q 022988 175 REAC-----K---ILHAAGPAKVVITSINIDGNLFLI--GS--------------HQKEKGTGDLMTALLLGWSNKYRDN 230 (289)
Q Consensus 175 ~~a~-----~---~L~~~g~~~Vvvt~g~~~G~~~~~--~~--------------~~dt~GAGD~f~g~l~~~l~~~g~~ 230 (289)
.+.. . .+...|++.|+||+|. +|+++.. +. .+||+||||+|+|+|++++.+ |++
T Consensus 206 ~~~~~~~~~~~~~~~~~~g~~~vvvt~G~-~Ga~~~~~~~~~~~~~p~~~v~~~~vvDttGAGDaF~agfl~~l~~-g~~ 283 (328)
T cd01943 206 EEKEAVLQALLFSGILQDPGGGVVLRCGK-LGCYVGSADSGPELWLPAYHTKSTKVVDPTGGGNSFLGGFAAGLAL-TKS 283 (328)
T ss_pred hhhhhhHHHHHHHhhhccCCCEEEEEeCC-CCCEEEecCCCceEecCCccCCCCcccCCCCchHHHHHHHHHHHHc-CCC
Confidence 1111 1 2245688999999997 8988765 21 268999999999999999998 999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022988 231 LDIAAELAVSSLQALLQRT 249 (289)
Q Consensus 231 ~~~A~~~A~a~a~~~l~~~ 249 (289)
+++|+++|++++..++++.
T Consensus 284 ~~~al~~a~a~Aa~~v~~~ 302 (328)
T cd01943 284 IDEACIYGSVAASFAIEQV 302 (328)
T ss_pred HHHHHHHHHHHHHHHHccC
Confidence 9999999999976666543
No 61
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=99.80 E-value=1.6e-18 Score=153.27 Aligned_cols=191 Identities=16% Similarity=0.129 Sum_probs=128.4
Q ss_pred ccCccchhh----cHHHHHhCCCcceeeceEEeecCCCCCCc---c----------eeeCCHHHHHHHHHHHHhCCCccc
Q 022988 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGYPTF---K----------GQVLNGQQLCDLIEGLEANNLLYY 87 (289)
Q Consensus 25 ~~G~vG~~~----~~~~l~~~Gv~~~~v~~~~~~~~tg~~~i---~----------g~~l~~~~~~~~~~~l~~~~~~~~ 87 (289)
..|.+|.|. ....|++.||+++++.... .+|+...+ . |...+........+.+.+ .
T Consensus 41 ~~~~vG~D~~g~~i~~~l~~~gI~~~~v~~~~--~~t~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 113 (264)
T cd01940 41 YIGAVGNDDAGAHVRSTLKRLGVDISHCRVKE--GENAVADVELVDGDRIFGLSNKGGVAREHPFEADLEYLSQ-----F 113 (264)
T ss_pred EEecccCchhHHHHHHHHHHcCCChhheEEcC--CCCceEEEEecCCceEEEeecCCcHHhcccCcccHhHHhc-----C
Confidence 457788765 3446899999998776532 23332111 0 100110000111122332 4
Q ss_pred CEEEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhCCC
Q 022988 88 THLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFR 167 (289)
Q Consensus 88 ~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g~~ 167 (289)
+.+.+...+. .+.+.++++.++++ ++++++||+.+. .. + .+. .+++++|++.+|+.|..
T Consensus 114 ~~v~~~~~~~---~~~~~~~~~~a~~~--g~~v~~D~~~~~-----~~-~---~~~-~~~~~~d~~~~~~~~~~------ 172 (264)
T cd01940 114 DLVHTGIYSH---EGHLEKALQALVGA--GALISFDFSDRW-----DD-D---YLQ-LVCPYVDFAFFSASDLS------ 172 (264)
T ss_pred CEEEEccccc---HHHHHHHHHHHHHc--CCEEEEcCcccC-----CH-H---HHH-hhcccCCEEEechhhcC------
Confidence 5555443332 45677888899887 899999996542 11 1 122 37899999999987652
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeeeecCCcEEEecc-----------cCCCCCchHHHHHHHHHHHccCCCC-HHHHH
Q 022988 168 IGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGS-----------HQKEKGTGDLMTALLLGWSNKYRDN-LDIAA 235 (289)
Q Consensus 168 ~~~~~~~~~a~~~L~~~g~~~Vvvt~g~~~G~~~~~~~-----------~~dt~GAGD~f~g~l~~~l~~~g~~-~~~A~ 235 (289)
.++..++++.++++|++.|++|+|. +|+++..++ .+||+||||+|+|+|++++.+ |++ +++|+
T Consensus 173 ---~~~~~~~~~~l~~~~~~~vvvT~G~-~G~~~~~~~~~~~~~~~~~~~vDttGAGDaf~ag~i~~l~~-g~~~~~~al 247 (264)
T cd01940 173 ---DEEVKAKLKEAVSRGAKLVIVTRGE-DGAIAYDGAVFYSVAPRPVEVVDTLGAGDSFIAGFLLSLLA-GGTAIAEAM 247 (264)
T ss_pred ---cchHHHHHHHHHHcCCCEEEEEECC-CCeEEEeCCeEEecCCcCCCCCCCCCchHHHHHHHHHHHHh-CCchHHHHH
Confidence 1345667888888899999999997 898876542 279999999999999999998 999 99999
Q ss_pred HHHHHHHHHHHHH
Q 022988 236 ELAVSSLQALLQR 248 (289)
Q Consensus 236 ~~A~a~a~~~l~~ 248 (289)
++|++++..++++
T Consensus 248 ~~a~~~aa~~~~~ 260 (264)
T cd01940 248 RQGAQFAAKTCGH 260 (264)
T ss_pred HHHHHHHHHHhcc
Confidence 9999997666543
No 62
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=99.78 E-value=4.9e-18 Score=151.64 Aligned_cols=191 Identities=18% Similarity=0.137 Sum_probs=129.2
Q ss_pred ccCccchhh----cHHHHHhCCCcceeeceEEeecCCCCCC---cc-----------eeeCCHHHHHHHHHHHHhCCCcc
Q 022988 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGYPT---FK-----------GQVLNGQQLCDLIEGLEANNLLY 86 (289)
Q Consensus 25 ~~G~vG~~~----~~~~l~~~Gv~~~~v~~~~~~~~tg~~~---i~-----------g~~l~~~~~~~~~~~l~~~~~~~ 86 (289)
..|.+|.|. ....|++.||++.++.... ...++... .. ...+..++++.. .+. .
T Consensus 55 ~~~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~ 126 (284)
T cd01945 55 LIGVVGDDAIGRLILAELAAEGVDTSFIVVAP-GARSPISSITDITGDRATISITAIDTQAAPDSLPDA--ILG-----G 126 (284)
T ss_pred EEEEecCchHHHHHHHHHHHcCCCccceeecC-CCCCccEEEEccCCCceEEEecCCCCCCCcccCCHH--HhC-----c
Confidence 356777764 3455889999998876432 11222211 01 112222333221 122 3
Q ss_pred cCEEEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhCC
Q 022988 87 YTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGF 166 (289)
Q Consensus 87 ~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g~ 166 (289)
++.+.++... .+...++++.+|++ +.++++|..+... .+ +. .+++++|+++||+.|++.++|.
T Consensus 127 ~~~v~i~~~~----~~~~~~~~~~~~~~--g~~v~~~~~~~~~------~~----~~-~~~~~~dil~~n~~e~~~l~~~ 189 (284)
T cd01945 127 ADAVLVDGRQ----PEAALHLAQEARAR--GIPIPLDLDGGGL------RV----LE-ELLPLADHAICSENFLRPNTGS 189 (284)
T ss_pred CCEEEEcCCC----HHHHHHHHHHHHHc--CCCeeEeccCCcc------cc----hH-HHhccCCEEEeChhHHhhhcCC
Confidence 5555443221 24566788888887 7777777644321 01 22 3788999999999999999986
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEeeeecCCcEEEe-cc-----------cCCCCCchHHHHHHHHHHHccCCCCHHHH
Q 022988 167 RIGSEADGREACKILHAAGPAKVVITSINIDGNLFLI-GS-----------HQKEKGTGDLMTALLLGWSNKYRDNLDIA 234 (289)
Q Consensus 167 ~~~~~~~~~~a~~~L~~~g~~~Vvvt~g~~~G~~~~~-~~-----------~~dt~GAGD~f~g~l~~~l~~~g~~~~~A 234 (289)
. +. ++++.+.+.|++.|+||+|+ +|++++. +. .+||+||||+|+|+|++++.+ |+++++|
T Consensus 190 ~----~~--~~~~~l~~~~~~~vivt~G~-~G~~~~~~~~~~~~~~~~~~~vvDt~GAGDaf~ag~l~~l~~-g~~~~~a 261 (284)
T cd01945 190 A----DD--EALELLASLGIPFVAVTLGE-AGCLWLERDGELFHVPAFPVEVVDTTGAGDVFHGAFAHALAE-GMPLREA 261 (284)
T ss_pred C----HH--HHHHHHHhcCCcEEEEEECC-CCeEEEcCCCCEEecCCCccccccCCCcHHHHHHHHHHHHHc-CCCHHHH
Confidence 3 11 56777788899999999997 8887765 22 279999999999999999998 9999999
Q ss_pred HHHHHHHHHHHHHH
Q 022988 235 AELAVSSLQALLQR 248 (289)
Q Consensus 235 ~~~A~a~a~~~l~~ 248 (289)
+++|+++++.++++
T Consensus 262 l~~a~~~Aa~~~~~ 275 (284)
T cd01945 262 LRFASAAAALKCRG 275 (284)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999997666655
No 63
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=99.77 E-value=1.8e-17 Score=147.74 Aligned_cols=206 Identities=20% Similarity=0.128 Sum_probs=128.6
Q ss_pred CCCeEEEEeccCccCccchhhcHHHHHhCCCcceeeceEEeec-CCCCCCcceeeCCHHHHHHHHHHHHhCCCcccCEEE
Q 022988 13 ETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSN-HTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLL 91 (289)
Q Consensus 13 ~~~~vl~i~g~~~~G~vG~~~~~~~l~~~Gv~~~~v~~~~~~~-~tg~~~i~g~~l~~~~~~~~~~~l~~~~~~~~~~v~ 91 (289)
+.|+||+|+|++.+++.+..+++..++. |.+...+.+.+ + .+.... .++.+...++....+.+.+.- -.+++++
T Consensus 23 ~~G~vliiaGs~~~~GA~ila~l~~~~~-g~~~v~~~~~~--~~~~~i~~-~~pe~~~~~~~~~~~~~~~~~-~~~davv 97 (272)
T TIGR00196 23 QYGRVLIIGGSDDYSGAPLLAALAALRA-GAGLVTVAAPE--NVITLINS-VSPELIVHRLGWKVDEDEELL-ERYDVVV 97 (272)
T ss_pred CCCeEEEEeCCCCCCcHHHHHHHHHHHh-CCCeEEEEEch--hhHHHHhh-cCCEEEEecchhhHHHHHhhh-ccCCEEE
Confidence 6788999999999999988766666543 44433322221 2 111100 111111112111122222210 0367778
Q ss_pred Eee-cCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhCCCCCC
Q 022988 92 TGY-IGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGS 170 (289)
Q Consensus 92 ~G~-l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g~~~~~ 170 (289)
+|. +++... +.++++.+++. +.++|+||. |..+. +.. ....+.+++||||..|++.|+|.+..+
T Consensus 98 ig~Gl~~~~~---~~~l~~~~~~~--~~pvVlDa~----g~~l~-----~~~-~~~~~~~~vItPN~~El~~L~g~~~~~ 162 (272)
T TIGR00196 98 IGPGLGQDPS---FKKAVEEVLEL--DKPVVLDAD----ALNLL-----TYD-KPKREGEVILTPHPGEFKRLLGLVNEI 162 (272)
T ss_pred EcCCCCCCHH---HHHHHHHHHhc--CCCEEEEhH----HHHHH-----hhc-ccccCCCEEECCCHHHHHHHhCCchhh
Confidence 876 776543 66677778776 889999992 21111 100 001346899999999999999987666
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeeeecCCcE-------EEecc---cCCCCCchHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 022988 171 EADGREACKILHAAGPAKVVITSINIDGNL-------FLIGS---HQKEKGTGDLMTALLLGWSNKYRDNLDIAAELAVS 240 (289)
Q Consensus 171 ~~~~~~a~~~L~~~g~~~Vvvt~g~~~G~~-------~~~~~---~~dt~GAGD~f~g~l~~~l~~~g~~~~~A~~~A~a 240 (289)
.++..+++++|.+++...|+++++ .+.+ |.... ..+++|+||+|+|.+++.+++ |.++.+|+..|..
T Consensus 163 ~~~~~~aa~~l~~~~~~vVv~kG~--~~~i~~~~~~~~~~~~~~~~~~~~GaGD~lag~iaa~la~-g~~~~~A~~~a~~ 239 (272)
T TIGR00196 163 QGDRLEAAQDIAQKLQAVVVLKGA--ADVIAAPDGDLWINKTGNAALAKGGTGDVLAGLIGGLLAQ-NLDPFDAACNAAF 239 (272)
T ss_pred hhhHHHHHHHHHHHhCCEEEEcCC--CCEEEcCCCeEEEECCCCCccCCCCchHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 678888999998766555555543 3333 32222 156899999999999999998 9999999987754
Q ss_pred H
Q 022988 241 S 241 (289)
Q Consensus 241 ~ 241 (289)
.
T Consensus 240 ~ 240 (272)
T TIGR00196 240 A 240 (272)
T ss_pred H
Confidence 3
No 64
>cd01946 ribokinase_group_C Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.77 E-value=1.1e-17 Score=149.09 Aligned_cols=198 Identities=19% Similarity=0.237 Sum_probs=128.6
Q ss_pred CccCccchhh---cHHHHHhCCCcceeeceEEeecCC----CCCC--cc--eeeCCH-HHHHHH----HHHHHhCCCccc
Q 022988 24 TVQGYVGNKS---AVFPLQLLGYDVDPIHSVQFSNHT----GYPT--FK--GQVLNG-QQLCDL----IEGLEANNLLYY 87 (289)
Q Consensus 24 ~~~G~vG~~~---~~~~l~~~Gv~~~~v~~~~~~~~t----g~~~--i~--g~~l~~-~~~~~~----~~~l~~~~~~~~ 87 (289)
.+.|.+|.|. ..+.|+++||+++++.... +.+| +... +. +...+. .....+ .+.+. ..
T Consensus 42 ~~i~~vG~D~g~~~~~~l~~~gi~~~~v~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 115 (277)
T cd01946 42 RLVGVVGEDFPEEDYKLLNSHNIVTLGLLSKE-DGKTFHWAGRYHYDLNEADTLDTDLNVFADFDPQLPEHYK-----DS 115 (277)
T ss_pred eeEEeccCcChHHHHHHHHhccCcceeEEEec-CCCeEEEeeEehhhcccccchhhhhhHHhhcCCCChHHhh-----cC
Confidence 3567777664 3456899999998886542 1222 1100 00 111110 001110 11122 25
Q ss_pred CEEEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhCCC
Q 022988 88 THLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFR 167 (289)
Q Consensus 88 ~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g~~ 167 (289)
+.+.++.++. +...++++.++++ .++++||.. .|. ....+.+++ +++++|+++||+.|++.|+|.
T Consensus 116 ~~v~~~~~~~----~~~~~~~~~~~~~---~~v~~D~~~-----~~~-~~~~~~~~~-~l~~~d~~~~n~~E~~~l~g~- 180 (277)
T cd01946 116 EFVFLGNIAP----ELQREVLEQVKDP---KLVVMDTMN-----FWI-SIKPEKLKK-VLAKVDVVIINDGEARQLTGA- 180 (277)
T ss_pred CEEEECCCCH----HHHHHHHHHHHhC---CEEEEccHH-----Hhh-hhhHHHHHH-HhccCCEEeCCHHHHHHHhCC-
Confidence 5666665543 4456667777753 589999832 221 112333444 889999999999999999985
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeeeecCCcEEEecc------------cCCCCCchHHHHHHHHHHHccCC-----CC
Q 022988 168 IGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGS------------HQKEKGTGDLMTALLLGWSNKYR-----DN 230 (289)
Q Consensus 168 ~~~~~~~~~a~~~L~~~g~~~Vvvt~g~~~G~~~~~~~------------~~dt~GAGD~f~g~l~~~l~~~g-----~~ 230 (289)
++..++++.|+++|++.|++|.|. +|+++..++ .+||+||||+|+|+|+++|.+ | .+
T Consensus 181 ----~~~~~~~~~l~~~g~~~vvvt~G~-~G~~~~~~~~~~~~~~~~~~~~vDttGAGDaF~Agfl~~l~~-~~~~~~~~ 254 (277)
T cd01946 181 ----ANLVKAARLILAMGPKALIIKRGE-YGALLFTDDGYFAAPAYPLESVFDPTGAGDTFAGGFIGYLAS-QKDTSEAN 254 (277)
T ss_pred ----chHHHHHHHHHHcCCCEEEEecCC-CcEEEEECCceEEcCCcccCccCCCCCchHHHHHHHHHHHHh-CCCcchhh
Confidence 466778888989999999999997 887665432 158999999999999999987 6 46
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022988 231 LDIAAELAVSSLQALLQR 248 (289)
Q Consensus 231 ~~~A~~~A~a~a~~~l~~ 248 (289)
+++|+++|++++..++++
T Consensus 255 ~~~a~~~a~~~aa~~~~~ 272 (277)
T cd01946 255 MRRAIIYGSAMASFCVED 272 (277)
T ss_pred HHHHHHHhHHHHhhhhhh
Confidence 889999999886555543
No 65
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=99.76 E-value=6e-18 Score=150.54 Aligned_cols=201 Identities=16% Similarity=0.125 Sum_probs=132.4
Q ss_pred CccCccchhh----cHHHHHhCCCcceeeceEEeecCCCCCCc----ce---------e--eCCHHHHHHHHHHHHhCCC
Q 022988 24 TVQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGYPTF----KG---------Q--VLNGQQLCDLIEGLEANNL 84 (289)
Q Consensus 24 ~~~G~vG~~~----~~~~l~~~Gv~~~~v~~~~~~~~tg~~~i----~g---------~--~l~~~~~~~~~~~l~~~~~ 84 (289)
.++|++|.|. .+..|+..||+++++.... ..+|+.+.+ .| . ...++..+...+.+++..+
T Consensus 64 afiGkvGdD~fG~~l~~~L~~~~V~~~~v~~~~-~~~T~~a~i~v~~dG~~~~~~v~gan~~~~~~~se~~~~~i~~ak~ 142 (330)
T KOG2855|consen 64 AFIGKVGDDEFGDDLLDILKQNGVDTSGVKFDE-NARTACATITVSKDGENRIIFVRGANADMLPEDSELNLEVIKEAKV 142 (330)
T ss_pred eeeecccchhhHHHHHHHHhhCCcccccceecC-CCceEEEEEEEccCCceEEEEEecCchhcCcccccccHHHHhhccE
Confidence 4679999888 4556899999999987654 234543322 11 1 1222223333445555443
Q ss_pred cccCEEEEe-ecCCHhHHHHH-HHHHHHHHhcCCCceEEEccccccCCCcc--CChhHHHHHHHhhcCCceEEcCCHHHH
Q 022988 85 LYYTHLLTG-YIGSVSFLNTI-LQVVEKLRSINPNLIYVCDPVMGDEGKLY--VPSELVSVYREKVVPVASMLTPNQFEA 160 (289)
Q Consensus 85 ~~~~~v~~G-~l~~~~~~~~~-~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~--~~~~~~~~l~~~ll~~~dii~pN~~E~ 160 (289)
+..| ..+.+.+.... ...++.++. ++..+.+||+++.. +| ..+.- ..+.. ++..+|+++..+.|+
T Consensus 143 -----~~~q~ei~~~~~~~s~~~~~~~~~~~--~g~~i~~~pn~~l~--l~~~~~~ne-~e~~~-i~~~adv~~~s~~e~ 211 (330)
T KOG2855|consen 143 -----FHCQSEILIEEPMRSLHIAAVKVAKN--AGPAIFYDPNLRLP--LWDSLEENE-SEIAS-IWNMADVIKVSSQEL 211 (330)
T ss_pred -----EEEeeecCCcchhHHHHHhhhhhhhc--ccccccCCCCcccc--ccccccccH-HHHHH-HhhhhhcccccHHHH
Confidence 3333 23333333322 223556664 36667779988743 44 22221 22333 778999999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHhcCCCeEEEeeeecCCcEEEecc------------cCCCCCchHHHHHHHHHHHccCC
Q 022988 161 EQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGS------------HQKEKGTGDLMTALLLGWSNKYR 228 (289)
Q Consensus 161 ~~L~g~~~~~~~~~~~a~~~L~~~g~~~Vvvt~g~~~G~~~~~~~------------~~dt~GAGD~f~g~l~~~l~~~g 228 (289)
+.|+|.. .+++ . .|...+.+.||||+|+ +|+.|++.. .+|||||||+|+|+|+..|.+ |
T Consensus 212 ~fl~~~~---~~~~---~-~L~~~~~k~viVTlG~-kG~~y~tk~~~~~~v~~~~V~~VDtTGAGDsFvgal~~~L~~-~ 282 (330)
T KOG2855|consen 212 AFLTGIE---DDKI---L-KLWHMKLKLVIVTLGE-KGCRYYTKDFKGSHVPAFKVKAVDTTGAGDSFVGALAVQLVR-G 282 (330)
T ss_pred HHhccCc---cchH---H-HHhccCCCEEEEEeCC-CceEEEecCCCCCCCCCcccccccCCCchHHHHHHHHHHHhh-c
Confidence 9999972 1222 3 7777777999999997 999988743 179999999999999999998 8
Q ss_pred --CC---HHHHHHHHHHHHHHH
Q 022988 229 --DN---LDIAAELAVSSLQAL 245 (289)
Q Consensus 229 --~~---~~~A~~~A~a~a~~~ 245 (289)
.+ +++++++|++++..+
T Consensus 283 ~~~~~~~L~~~l~~A~a~~ai~ 304 (330)
T KOG2855|consen 283 SLLPELSLEEALRFANACGAIT 304 (330)
T ss_pred cccchHHHHHHHHHHHHhhhHH
Confidence 66 899999999886555
No 66
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.74 E-value=3.9e-17 Score=145.35 Aligned_cols=124 Identities=20% Similarity=0.233 Sum_probs=93.4
Q ss_pred HHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHH---HHhhCCCCCCHHHHHHHHH
Q 022988 103 TILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEA---EQLTGFRIGSEADGREACK 179 (289)
Q Consensus 103 ~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~---~~L~g~~~~~~~~~~~a~~ 179 (289)
.+.++++.++++ ++++++||+.+.. .|. . +.+.+ +++++|+++||+.|+ +.++|.+ +..
T Consensus 137 ~~~~~~~~~~~~--g~~v~~D~~~~~~--~~~-~---~~~~~-~l~~~dil~~n~~E~~~l~~~~~~~-----~~~---- 198 (279)
T cd01942 137 GLIELARELAAG--GITVSFDPGQELP--RLS-G---EELEE-ILERADILFVNDYEAELLKERTGLS-----EAE---- 198 (279)
T ss_pred HHHHHHHHHHHc--CCeEEEcchhhhh--hcc-H---HHHHH-HHhhCCEEecCHHHHHHHHhhcCCC-----hHH----
Confidence 456677778776 8999999975421 111 1 22333 788999999999999 5566642 111
Q ss_pred HHHhcCCCeEEEeeeecCCcEEEecc------------cCCCCCchHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHH
Q 022988 180 ILHAAGPAKVVITSINIDGNLFLIGS------------HQKEKGTGDLMTALLLGWSNKYRDNLDIAAELAVSSLQALLQ 247 (289)
Q Consensus 180 ~L~~~g~~~Vvvt~g~~~G~~~~~~~------------~~dt~GAGD~f~g~l~~~l~~~g~~~~~A~~~A~a~a~~~l~ 247 (289)
...|++.|++|.|+ +|+++..++ .+||+||||+|+|+|++++.+ |.++++|+++|++++..+++
T Consensus 199 --~~~~~~~vvvt~G~-~G~~~~~~~~~~~~~~~~~~~vvDttGAGDaf~a~~i~~l~~-g~~l~~al~~a~~~Aa~~~~ 274 (279)
T cd01942 199 --LASGVRVVVVTLGP-KGAIVFEDGEEVEVPAVPAVKVVDTTGAGDAFRAGFLYGLLR-GYDLEESLRLGNLAASLKVE 274 (279)
T ss_pred --HhcCCCEEEEEECC-CceEEEECCceEEccCcCcCCCcCCCCchHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHc
Confidence 12688999999997 888765422 269999999999999999998 99999999999999776665
Q ss_pred H
Q 022988 248 R 248 (289)
Q Consensus 248 ~ 248 (289)
+
T Consensus 275 ~ 275 (279)
T cd01942 275 R 275 (279)
T ss_pred c
Confidence 4
No 67
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=99.72 E-value=1.1e-16 Score=143.58 Aligned_cols=194 Identities=14% Similarity=0.103 Sum_probs=120.9
Q ss_pred ccCccchhh----cHHHHHhCCCcceeeceEEeecC---------CCCCCc-----ceeeCCHHHHHHHHHHHHhCCCcc
Q 022988 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNH---------TGYPTF-----KGQVLNGQQLCDLIEGLEANNLLY 86 (289)
Q Consensus 25 ~~G~vG~~~----~~~~l~~~Gv~~~~v~~~~~~~~---------tg~~~i-----~g~~l~~~~~~~~~~~l~~~~~~~ 86 (289)
+.|.+|+|. ....|++.||++.++.......+ .|-..+ ....++.++++... +.+
T Consensus 55 ~~~~vG~D~~g~~~~~~l~~~gId~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~--~~~----- 127 (290)
T cd01939 55 FLGVLSRGPVFESLLDDFQSRGIDISHCYRKDIDEPASSYIIRSRAGGRTTIVNDNNLPEVTYDDFSKID--LTQ----- 127 (290)
T ss_pred EEEeecCCHHHHHHHHHHHHcCCceeeeeEcCCCCCeeEEEEEcCCCCeEEEEeCCCCCCCCHHHHhhhh--hcc-----
Confidence 457788765 44558999999988643210011 111111 11245556655421 222
Q ss_pred cCEE-EEeecCCHhHHHHHHHHHHHHHhcCC-----CceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHH
Q 022988 87 YTHL-LTGYIGSVSFLNTILQVVEKLRSINP-----NLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEA 160 (289)
Q Consensus 87 ~~~v-~~G~l~~~~~~~~~~~~l~~~k~~~~-----~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~ 160 (289)
++.+ +.|..+ +...++++.++++.. .+++++|+.... + .+. .+++++|++++|+.|+
T Consensus 128 ~~~~~~~g~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~-------~----~~~-~~l~~~di~~~n~~~~ 190 (290)
T cd01939 128 YGWIHFEGRNP-----DETLRMMQHIEEHNNRRPEIRITISVEVEKPR-------E----ELL-ELAAYCDVVFVSKDWA 190 (290)
T ss_pred CCEEEEeccCH-----HHHHHHHHHHHHhcCcCCCcceEEEEEeccCc-------h----hhh-hHHhhCCEEEEEhHHH
Confidence 4443 445443 234456666665410 167889985321 1 122 3788999999999998
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHhcCCCeEEEeeeecCCcEEEec-c------------cCCCCCchHHHHHHHHHHHccC
Q 022988 161 EQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIG-S------------HQKEKGTGDLMTALLLGWSNKY 227 (289)
Q Consensus 161 ~~L~g~~~~~~~~~~~a~~~L~~~g~~~Vvvt~g~~~G~~~~~~-~------------~~dt~GAGD~f~g~l~~~l~~~ 227 (289)
+.+ |.. +.++... ...+...|++.|++|.|. +|+++... + .+||+||||+|+|+|++++.+
T Consensus 191 ~~~-~~~--~~~~~~~-~~~~~~~~~~~vvvt~G~-~G~~~~~~~~~~~~~~~~~~~~vvDt~GAGDsf~agfl~~l~~- 264 (290)
T cd01939 191 QSR-GYK--SPEECLR-GEGPRAKKAALLVCTWGD-QGAGALGPDGEYVHSPAHKPIRVVDTLGAGDTFNAAVIYALNK- 264 (290)
T ss_pred Hhc-CcC--CHHHHHH-hhhhhccCCcEEEEEccc-CCeEEEcCCCCEEEecCCCCCCcccCCCchHHHHHHHHHHHHc-
Confidence 865 542 2333221 122234578899999997 88766542 1 268999999999999999998
Q ss_pred CCC-HHHHHHHHHHHHHHHHHH
Q 022988 228 RDN-LDIAAELAVSSLQALLQR 248 (289)
Q Consensus 228 g~~-~~~A~~~A~a~a~~~l~~ 248 (289)
|++ +++|+++|++++...+++
T Consensus 265 g~~~~~~a~~~a~a~aa~~i~~ 286 (290)
T cd01939 265 GPDDLSEALDFGNRVASQKCTG 286 (290)
T ss_pred CCccHHHHHHHHHHHHHHHHhh
Confidence 995 999999999997666654
No 68
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=99.72 E-value=2.9e-16 Score=138.73 Aligned_cols=183 Identities=18% Similarity=0.176 Sum_probs=122.5
Q ss_pred ccCccchhh----cHHHHHhCCCcceeeceEEeecCCCCCCc---c----------e----eeCCHHHHHHHHHHHHhCC
Q 022988 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGYPTF---K----------G----QVLNGQQLCDLIEGLEANN 83 (289)
Q Consensus 25 ~~G~vG~~~----~~~~l~~~Gv~~~~v~~~~~~~~tg~~~i---~----------g----~~l~~~~~~~~~~~l~~~~ 83 (289)
..|.+|+|. ....|++.||+++++.... ..|+...+ . + ..+++.+ ++.+..
T Consensus 42 ~is~vG~D~~g~~i~~~l~~~gI~~~~~~~~~--~~t~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~----~~~l~~-- 113 (260)
T PRK09813 42 CITWVGDDDYGTKLKQDLARMGVDISHVHTKH--GVTAQTQVELHDNDRVFGDYTEGVMADFALSEED----YAWLAQ-- 113 (260)
T ss_pred EEEEecCcHHHHHHHHHHHHcCCcchheeeec--CCCceEEEEEeCCcEEeeccCCCcccccccCHHH----HHHHHh--
Confidence 468888775 3345899999998876532 23332110 0 1 0122222 123343
Q ss_pred CcccCEEEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHh
Q 022988 84 LLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQL 163 (289)
Q Consensus 84 ~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L 163 (289)
.+.+..+... ...++++.++++ ++++++||+.+.. .. .+. .+++++|++++|..+
T Consensus 114 ---~~~v~~~~~~------~~~~~~~~~~~~--~~~v~~D~~~~~~------~~---~~~-~~~~~~d~~~~~~~~---- 168 (260)
T PRK09813 114 ---YDIVHAAIWG------HAEDAFPQLHAA--GKLTAFDFSDKWD------SP---LWQ-TLVPHLDYAFASAPQ---- 168 (260)
T ss_pred ---CCEEEEeccc------hHHHHHHHHHHc--CCeEEEEcCCCcc------HH---HHH-HhCCceeEEEecCCc----
Confidence 3444443211 123556677776 8999999964321 11 122 378999999988542
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCCeEEEeeeecCCcEEEecc-----------cCCCCCchHHHHHHHHHHHccCCCCHH
Q 022988 164 TGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGS-----------HQKEKGTGDLMTALLLGWSNKYRDNLD 232 (289)
Q Consensus 164 ~g~~~~~~~~~~~a~~~L~~~g~~~Vvvt~g~~~G~~~~~~~-----------~~dt~GAGD~f~g~l~~~l~~~g~~~~ 232 (289)
...++.++++.+.+.|++.|+||.|. +|+++..++ .+||+||||+|+|+|++++.+ |++++
T Consensus 169 ------~~~~~~~~~~~~~~~g~~~viit~G~-~Ga~~~~~~~~~~~~~~~~~~vDttGAGDaF~ag~i~~~~~-g~~~~ 240 (260)
T PRK09813 169 ------EDEFLRLKMKAIVARGAGVVIVTLGE-NGSIAWDGAQFWRQAPEPVTVVDTMGAGDSFIAGFLCGWLA-GMTLP 240 (260)
T ss_pred ------chHHHHHHHHHHHHcCCCEEEEEECC-CceEEEECCEEEecCCcccCCCCCCCchHHHHHHHHHHHHc-CCCHH
Confidence 12456677888888899999999997 898876532 279999999999999999998 99999
Q ss_pred HHHHHHHHHHHHHHHH
Q 022988 233 IAAELAVSSLQALLQR 248 (289)
Q Consensus 233 ~A~~~A~a~a~~~l~~ 248 (289)
+|+++|++++..++++
T Consensus 241 ~al~~a~~~aa~~~~~ 256 (260)
T PRK09813 241 QAMAQGTACAAKTIQY 256 (260)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999997666643
No 69
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.71 E-value=5e-17 Score=143.85 Aligned_cols=117 Identities=15% Similarity=0.156 Sum_probs=91.1
Q ss_pred HHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 022988 105 LQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAA 184 (289)
Q Consensus 105 ~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g~~~~~~~~~~~a~~~L~~~ 184 (289)
.++++.++++ + .+++|+.++.. . +.++ ++++++|++++|++|++.+++ ++.+.+.
T Consensus 134 ~~~~~~a~~~--~-~~~~d~~~~~~----~-----~~~~-~~~~~~d~~~~n~~e~~~l~~------------~~~~~~~ 188 (265)
T cd01947 134 KEAIRKCRET--K-LVILQVTPRVR----V-----DELN-QALIPLDILIGSRLDPGELVV------------AEKIAGP 188 (265)
T ss_pred HHHHHHHHHh--C-CeEeccCcccc----c-----hhHH-HHhhhCCEEEeCHHHHHHhhh------------HHHHHhc
Confidence 3556677764 4 57889865421 1 1123 378899999999999998874 3456678
Q ss_pred CCCeEEEeeeecCCcEEEecc-----------cCCCCCchHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHH
Q 022988 185 GPAKVVITSINIDGNLFLIGS-----------HQKEKGTGDLMTALLLGWSNKYRDNLDIAAELAVSSLQALLQR 248 (289)
Q Consensus 185 g~~~Vvvt~g~~~G~~~~~~~-----------~~dt~GAGD~f~g~l~~~l~~~g~~~~~A~~~A~a~a~~~l~~ 248 (289)
|++.|++|.|+ +|+++..++ .+||+||||+|.|+|++++.+ |+++++|+++|++++..++++
T Consensus 189 ~~~~viit~G~-~Ga~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~l~~l~~-g~~~~~al~~a~~~Aa~~v~~ 261 (265)
T cd01947 189 FPRYLIVTEGE-LGAILYPGGRYNHVPAKKAKVPDSTGAGDSFAAGFIYGLLK-GWSIEEALELGAQCGAICVSH 261 (265)
T ss_pred cCCEEEEEeCC-CCeEEEECCeeEECCCCCCCCCCCCCchHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhc
Confidence 99999999997 898876542 269999999999999999998 999999999999987666543
No 70
>TIGR00694 thiM hydroxyethylthiazole kinase. This model represents the hydoxyethylthiazole kinase, ThiM, of a number of bacteria, and C-terminal domains of bifunctional thiamine biosynthesis proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the N-terminal domain corresponds to the bacterial thiamine-phosphate pyrophosphorylase (EC 2.5.1.3), ThiE.
Probab=99.69 E-value=1.1e-15 Score=134.50 Aligned_cols=155 Identities=16% Similarity=0.118 Sum_probs=113.0
Q ss_pred cCEEEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcC--CceEEcCCHHHHHHhh
Q 022988 87 YTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVP--VASMLTPNQFEAEQLT 164 (289)
Q Consensus 87 ~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~--~~dii~pN~~E~~~L~ 164 (289)
.-+|++|++.+ +..+.+..+++.++++ ++|+|+||+...... ... +.. +.+++ ++++||||..|++.|+
T Consensus 52 al~ik~G~l~~-~~~~~i~~~~~~~~~~--~~pvVlDPV~~~~s~--~r~---~~~-~~Ll~~~~~~vITpN~~E~~~L~ 122 (249)
T TIGR00694 52 ALVINIGTLDK-ESIEAMIAAGKSANEL--GVPVVLDPVGVGATK--FRT---ETA-LELLSEGRFAAIRGNAGEIASLA 122 (249)
T ss_pred ceEEeCCCCCH-HHHHHHHHHHHHHHhc--CCCEEEcccccccch--hHH---HHH-HHHHhhcCCceeCCCHHHHHHHh
Confidence 34688898855 5678888888888877 789999998763211 111 111 23555 4799999999999999
Q ss_pred CCC-------C-CCHHHHHHHHHHHHhcCCCeEEEeeeecC-----CcEEE-ec-cc--CCCCCchHHHHHHHHHHHccC
Q 022988 165 GFR-------I-GSEADGREACKILHAAGPAKVVITSINID-----GNLFL-IG-SH--QKEKGTGDLMTALLLGWSNKY 227 (289)
Q Consensus 165 g~~-------~-~~~~~~~~a~~~L~~~g~~~Vvvt~g~~~-----G~~~~-~~-~~--~dt~GAGD~f~g~l~~~l~~~ 227 (289)
|.+ . .+.++..+++++|.+++...|++|++. + +..+. .. .+ ...+|+||+|+|++++++++
T Consensus 123 g~~~~~~gvd~~~~~~d~~~~a~~la~~~~~~VllkG~~-D~i~~~~~~~~~~~g~~~~~~~~GtGc~LssaIaa~LA~- 200 (249)
T TIGR00694 123 GETGLMKGVDSGEGAADAIRAAQQAAQKYGTVVVITGEV-DYVSDGTSVYTIHNGTELLGKITGSGCLLGSVVAAFCAV- 200 (249)
T ss_pred CCCCCCCCcCCccchHHHHHHHHHHHHHhCCEEEEECCC-cEEEeCCEEEEECCCChHHhCCccchHHHHHHHHHHHhc-
Confidence 864 1 124577788888887755589999864 2 11221 11 11 22489999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHh
Q 022988 228 RDNLDIAAELAVSSLQALLQRTVND 252 (289)
Q Consensus 228 g~~~~~A~~~A~a~a~~~l~~~~~~ 252 (289)
|.++.+|+..|..+...+.+...+.
T Consensus 201 g~~~~~A~~~A~~~~~~a~~~a~~~ 225 (249)
T TIGR00694 201 EEDPLDAAISACLLYKIAGELAAER 225 (249)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999988888877653
No 71
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=99.69 E-value=6.8e-16 Score=130.02 Aligned_cols=115 Identities=30% Similarity=0.349 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhCCCCCCHHHHHHHHHH
Q 022988 101 LNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKI 180 (289)
Q Consensus 101 ~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g~~~~~~~~~~~a~~~ 180 (289)
.+.+.++++.+++. ++++++||++... .+...+ +. .+++++|+++||+.|++.|+|.+..+.++..++++.
T Consensus 70 ~~~~~~~~~~~~~~--~~~v~~D~~~~~~--~~~~~~----~~-~~~~~~dvl~~n~~E~~~l~~~~~~~~~~~~~~~~~ 140 (196)
T cd00287 70 PEAVLDALEEARRR--GVPVVLDPGPRAV--RLDGEE----LE-KLLPGVDILTPNEEEAEALTGRRDLEVKEAAEAAAL 140 (196)
T ss_pred HHHHHHHHHHHHHc--CCeEEEeCCcccc--ccccch----HH-HHHhhCCEECCCHHHHHHHhCCCCCChHHHHHHHHH
Confidence 45677788888887 8999999986532 111111 22 378899999999999999999876666677788899
Q ss_pred HHhcCCCeEEEeeeecCCcEEEe-cc-----------cCCCCCchHHHHHHHHHHHc
Q 022988 181 LHAAGPAKVVITSINIDGNLFLI-GS-----------HQKEKGTGDLMTALLLGWSN 225 (289)
Q Consensus 181 L~~~g~~~Vvvt~g~~~G~~~~~-~~-----------~~dt~GAGD~f~g~l~~~l~ 225 (289)
+++.|++.|++|.|+ +|+++.. +. .+||+||||+|+|+|++++.
T Consensus 141 l~~~g~~~vvvt~G~-~g~~~~~~~~~~~~~~~~~~~~vdt~GAGD~f~ag~~~~l~ 196 (196)
T cd00287 141 LLSKGPKVVIVTLGE-KGAIVATRGGTEVHVPAFPVKVVDTTGAGDAFLAALAAGLA 196 (196)
T ss_pred HHhcCCCEEEEEECC-CccEEEecCCceEEcCCccCCcccCCCchHHHHHHHHHHhC
Confidence 999999999999997 8887766 32 16899999999999999863
No 72
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=99.68 E-value=5e-15 Score=129.62 Aligned_cols=150 Identities=21% Similarity=0.170 Sum_probs=108.1
Q ss_pred EEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcC--CceEEcCCHHHHHHhhCCC
Q 022988 90 LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVP--VASMLTPNQFEAEQLTGFR 167 (289)
Q Consensus 90 v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~--~~dii~pN~~E~~~L~g~~ 167 (289)
+..|++ .+...+.+..+++.+++. ++++|+||...... . ...+.+.+ ++. .+|+||||..|++.|+|.+
T Consensus 55 i~~G~l-~~~~~~~i~~~~~~~~~~--~~pvVlDp~~~~~~----~-~~~~~~~~-ll~~~~~~ilTPN~~Ea~~L~g~~ 125 (242)
T cd01170 55 INIGTL-TSEQIEAMLKAGKAANQL--GKPVVLDPVGVGAT----S-FRTEVAKE-LLAEGQPTVIRGNASEIAALAGLT 125 (242)
T ss_pred EeCCCC-ChHHHHHHHHHHHHHHhc--CCCEEEcccccCcc----h-hHHHHHHH-HHhcCCCeEEcCCHHHHHHHhCCC
Confidence 444555 345667777777778876 88999999754211 0 11122223 444 4999999999999999976
Q ss_pred CCC---------HHHHHHHHHHHHhcCCCeEEEeeeecCCcEE------Eec--cc--CCCCCchHHHHHHHHHHHccCC
Q 022988 168 IGS---------EADGREACKILHAAGPAKVVITSINIDGNLF------LIG--SH--QKEKGTGDLMTALLLGWSNKYR 228 (289)
Q Consensus 168 ~~~---------~~~~~~a~~~L~~~g~~~Vvvt~g~~~G~~~------~~~--~~--~dt~GAGD~f~g~l~~~l~~~g 228 (289)
..+ .++..+++++|.+++...|++|++. ..++ ... .+ .+.+|+||+|+|++++.|++ |
T Consensus 126 ~~~~~~~~~~~~~~~~~~aa~~l~~~~~~~VllkG~~--d~l~~~~~~~~~~~~~~~~~~v~GtGdtLa~aiAa~LA~-g 202 (242)
T cd01170 126 GLGKGVDSSSSDEEDALELAKALARKYGAVVVVTGEV--DYITDGERVVVVKNGHPLLTKITGTGCLLGAVIAAFLAV-G 202 (242)
T ss_pred CCcCcccCCCcchHHHHHHHHHHHHHhCCEEEEECCC--cEEEECCEEEEEeCCCccccCCCchHHHHHHHHHHHHhC-C
Confidence 532 5678889999987776689999764 2222 111 11 34589999999999999998 9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q 022988 229 DNLDIAAELAVSSLQALLQRTVN 251 (289)
Q Consensus 229 ~~~~~A~~~A~a~a~~~l~~~~~ 251 (289)
.++.+|+..|..+...+++...+
T Consensus 203 ~~~~~A~~~A~~~~~~a~~~a~~ 225 (242)
T cd01170 203 DDPLEAAVSAVLVYGIAGELAAE 225 (242)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998888876654
No 73
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.64 E-value=3.3e-15 Score=131.38 Aligned_cols=136 Identities=15% Similarity=0.195 Sum_probs=97.6
Q ss_pred ccCEEEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhC
Q 022988 86 YYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTG 165 (289)
Q Consensus 86 ~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g 165 (289)
..+.+.++.++.+ ....+.+. ..+|++||+.... .|.... .+...+++++|+++||+.|++.+
T Consensus 107 ~~~~~~~~~~~~~----~~~~~~~~------~~~v~~D~~~~~~--~~~~~~---~~~~~~l~~~di~~~n~~E~~~~-- 169 (254)
T cd01937 107 TAEIVILGPVPEE----ISPSLFRK------FAFISLDAQGFLR--RANQEK---LIKCVILKLHDVLKLSRVEAEVI-- 169 (254)
T ss_pred cccEEEECCCcch----hcHHHHhh------hhheeEcccccee--eccccc---hHHHhhcccCcEEEEcHHHHhhc--
Confidence 3566666655432 22222222 2579999964311 111111 11234899999999999999983
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEEeeeecCCcEEEecc-----------cCCCCCchHHHHHHHHHHHccCCCCHHHH
Q 022988 166 FRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGS-----------HQKEKGTGDLMTALLLGWSNKYRDNLDIA 234 (289)
Q Consensus 166 ~~~~~~~~~~~a~~~L~~~g~~~Vvvt~g~~~G~~~~~~~-----------~~dt~GAGD~f~g~l~~~l~~~g~~~~~A 234 (289)
.+.+++++.+.++|++.|++|.|. +|+++..++ .+||+||||+|+|+|++++.+ |+++++|
T Consensus 170 ------~~~~~~~~~l~~~g~~~vvvt~g~-~g~~~~~~~~~~~~~~~~~~~vdt~GAGD~f~a~~~~~l~~-g~~~~~a 241 (254)
T cd01937 170 ------STPTELARLIKETGVKEIIVTDGE-EGGYIFDGNGKYTIPASKKDVVDPTGAGDVFLAAFLYSRLS-GKDIKEA 241 (254)
T ss_pred ------CCHHHHHHHHHHcCCCEEEEeeCC-cceEEEECCccEEccccCceeccCCCchHHHHHHHHHHHHc-CCCHHHH
Confidence 234567788888999999999997 888765432 279999999999999999998 9999999
Q ss_pred HHHHHHHHHHHH
Q 022988 235 AELAVSSLQALL 246 (289)
Q Consensus 235 ~~~A~a~a~~~l 246 (289)
+++|++++...+
T Consensus 242 ~~~a~~~aa~~i 253 (254)
T cd01937 242 AEFAAAAAAKFI 253 (254)
T ss_pred HHHHHHHHHHHh
Confidence 999999876654
No 74
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.62 E-value=1.4e-14 Score=130.76 Aligned_cols=123 Identities=21% Similarity=0.281 Sum_probs=100.7
Q ss_pred HHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhCCCCCCHHHHHHHHHHHH-
Q 022988 104 ILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILH- 182 (289)
Q Consensus 104 ~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g~~~~~~~~~~~a~~~L~- 182 (289)
+..+++.+|++ ++||.+|| .|+.| ..+..+++||||..|++...|....+ +++.+..++|.
T Consensus 160 ~q~~I~~ar~~--~~pVLvDP----Kg~Df-----------~~Y~GAtLiTPN~~E~~~~vg~~~~e-~el~~~g~kL~~ 221 (467)
T COG2870 160 VQKMIDLAREA--GIPVLVDP----KGKDF-----------EKYRGATLITPNLKEFEEAVGKCKSE-EELEERGQKLKE 221 (467)
T ss_pred HHHHHHHHHHc--CCcEEECC----CCcch-----------hhhCCCeecCCCHHHHHHHHcccccH-HHHHHHHHHHHH
Confidence 67788899988 99999999 54433 25678999999999999999986543 66777777776
Q ss_pred hcCCCeEEEeeeecCCcEEEeccc-----------CCCCCchHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHH
Q 022988 183 AAGPAKVVITSINIDGNLFLIGSH-----------QKEKGTGDLMTALLLGWSNKYRDNLDIAAELAVSSLQALL 246 (289)
Q Consensus 183 ~~g~~~Vvvt~g~~~G~~~~~~~~-----------~dt~GAGD~f~g~l~~~l~~~g~~~~~A~~~A~a~a~~~l 246 (289)
+.+...+++|.++ +|.-++..+. -|.|||||+-.|.|+++|+. |.++++|+.+|++++..++
T Consensus 222 ~~~L~alLvTRsE-~GMtL~~~~~~~h~pt~AkEVyDVTGAGDTVIa~la~~laa-G~s~~eAc~lAN~AagiVV 294 (467)
T COG2870 222 ELDLSALLVTRSE-KGMTLFQEGKPLHFPARAKEVYDVTGAGDTVIAVLAAALAA-GASLEEACELANAAAGIVV 294 (467)
T ss_pred hhCcceEEEEecc-CCceeecCCcccccchhheeeeeccCCCchHHHHHHHHHHc-CCCHHHHHHHhhhhcceEE
Confidence 4677899999997 8977665321 48899999999999999998 9999999999999875444
No 75
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=99.62 E-value=4.3e-15 Score=131.09 Aligned_cols=209 Identities=18% Similarity=0.190 Sum_probs=132.2
Q ss_pred CccCccchhh----cHHHHHhCCCcceeeceEEeecCCCCCC--ccee------------eCCHHHHHH--HHHHHHhCC
Q 022988 24 TVQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGYPT--FKGQ------------VLNGQQLCD--LIEGLEANN 83 (289)
Q Consensus 24 ~~~G~vG~~~----~~~~l~~~Gv~~~~v~~~~~~~~tg~~~--i~g~------------~l~~~~~~~--~~~~l~~~~ 83 (289)
.+.|.+|.|. ....+++.||++.+-+... .+||... +.|. .++.++++. .+..+.+..
T Consensus 84 ~f~GsvG~Dk~ge~l~~~~~~aGv~~~yq~~~d--~~TGtCavli~~~nRSL~anLgAAn~f~~dhl~~~~~~~lveka~ 161 (343)
T KOG2854|consen 84 VFFGSVGKDKFGELLKSKARAAGVNVHYQVKED--GPTGTCAVLITGDNRSLCANLGAANCFKVDHLDKEENWALVEKAK 161 (343)
T ss_pred EEEeeccCchHHHHHHHHHHhcCceEEEEeccC--CCCceEEEEEeCCCcchhhccchhhccCHHHhcchhhhhhhhhee
Confidence 4679999887 3334788999998776543 4555321 1111 223333322 222334433
Q ss_pred CcccCEEEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHh
Q 022988 84 LLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQL 163 (289)
Q Consensus 84 ~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L 163 (289)
+++ +.|++- ....+++..+.+.+.+. +.+.+++-.. .+..+-..+.+.+ +++++|+|+.|++|++.+
T Consensus 162 v~y----v~Gffl-tv~p~ai~~v~qh~~e~--~r~~~lnlsa-----pfI~q~~~~~l~~-v~~y~DiifgNe~EA~af 228 (343)
T KOG2854|consen 162 VFY----VAGFFL-TVSPDAIRKVAQHAAEN--NRVFTLNLSA-----PFISQFFKDALDK-VLPYADIIFGNEDEAAAF 228 (343)
T ss_pred EEE----EEEEEE-EeChHHHHHHHHHHHHh--cchhheeccc-----hhHHHHHHHHHHh-hcCcceEEEcCHHHHHHH
Confidence 332 345432 23356777777888876 5555555421 2234444555655 899999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHh------cCCCeEEEeeeecCCcEEEecc--------------cCCCCCchHHHHHHHHHH
Q 022988 164 TGFRIGSEADGREACKILHA------AGPAKVVITSINIDGNLFLIGS--------------HQKEKGTGDLMTALLLGW 223 (289)
Q Consensus 164 ~g~~~~~~~~~~~a~~~L~~------~g~~~Vvvt~g~~~G~~~~~~~--------------~~dt~GAGD~f~g~l~~~ 223 (289)
+...-....++.+.+..+.. ..++.|++|.|. +..+...++ -+||+||||+|+|+|++.
T Consensus 229 ~~~~~~~t~dv~eia~~~~~~~k~~~~~~r~vvit~g~-~~~i~~~~~~v~~~~v~~~~~~~ivDtnGAGDaFvgGFl~~ 307 (343)
T KOG2854|consen 229 ARAHGWETKDVKEIALKLSALPKVNGTRPRTVVITQGP-DPVIVAEDGKVTAYPVLPLPVEEIVDTNGAGDAFVGGFLSQ 307 (343)
T ss_pred HHhhCCcccchHHHhhHhhccccccccccceEEEccCC-CceEEecCCceEEeccccccceeeeeCCCchHHHHHHHHHH
Confidence 85321111233333332221 235789999997 666554432 179999999999999999
Q ss_pred HccCCCCHHHHHHHHHHHHHHHHHHH
Q 022988 224 SNKYRDNLDIAAELAVSSLQALLQRT 249 (289)
Q Consensus 224 l~~~g~~~~~A~~~A~a~a~~~l~~~ 249 (289)
|.+ |++++++++.+..+++.+++..
T Consensus 308 l~q-g~~l~~cir~g~~aa~~vi~~~ 332 (343)
T KOG2854|consen 308 LVQ-GKSLEECIRAGSYAASHVIRRV 332 (343)
T ss_pred HHc-CCCHHHHHHHHHHHhhheeecc
Confidence 999 9999999999998887777655
No 76
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=99.57 E-value=2.9e-13 Score=119.96 Aligned_cols=154 Identities=19% Similarity=0.137 Sum_probs=108.1
Q ss_pred EEEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhCCCC
Q 022988 89 HLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRI 168 (289)
Q Consensus 89 ~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g~~~ 168 (289)
++..|++ .+...+.+..+++.+++. ++|+|+||+..... . ...+..+.+.+ .+++++||||..|+..|+|.+.
T Consensus 59 vi~~G~l-~~~~~~~i~~~~~~a~~~--~~pvVlDpv~~~~~-~-~~~~~~~~ll~--~~~~~vItPN~~E~~~L~g~~~ 131 (263)
T PRK09355 59 VINIGTL-TEERIEAMLAAGKIANEA--GKPVVLDPVGVGAT-S-YRTEFALELLA--EVKPAVIRGNASEIAALAGEAA 131 (263)
T ss_pred EEeCCCC-CHHHHHHHHHHHHHHHhc--CCCEEECCcccCcc-h-hhHHHHHHHHH--hcCCcEecCCHHHHHHHhCCCc
Confidence 5677777 445566677777778877 88999999765311 1 12222222222 1368999999999999999642
Q ss_pred C--------CHHHHHHHHHHHHhcCCCeEEEeeeecC-----CcEE-Ee-ccc--CCCCCchHHHHHHHHHHHccCCCCH
Q 022988 169 G--------SEADGREACKILHAAGPAKVVITSINID-----GNLF-LI-GSH--QKEKGTGDLMTALLLGWSNKYRDNL 231 (289)
Q Consensus 169 ~--------~~~~~~~a~~~L~~~g~~~Vvvt~g~~~-----G~~~-~~-~~~--~dt~GAGD~f~g~l~~~l~~~g~~~ 231 (289)
. +.++..++++.|.+++...|++|++. + +..+ .. +.+ .+.+|+||+|+|++++++++ |.++
T Consensus 132 ~~~~vd~~~~~~~~~~~a~~la~~~~~~VvvkG~~-d~I~~~~~~~~~~~g~~~~~~v~GtGc~L~~~iaa~lA~-g~~~ 209 (263)
T PRK09355 132 ETKGVDSTDGSADAVEIAKAAAKKYGTVVVVTGEV-DYITDGERVVSVHNGHPLMTKVTGTGCLLSAVVAAFAAV-EKDY 209 (263)
T ss_pred ccCCcCCCCCHHHHHHHHHHHHHHhCCEEEEECCC-cEEEeCCEEEEEeCCCcccCCcccccHHHHHHHHHHHhc-CCCH
Confidence 1 24577788889988766789999864 3 1122 22 122 34589999999999999998 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022988 232 DIAAELAVSSLQALLQRTVN 251 (289)
Q Consensus 232 ~~A~~~A~a~a~~~l~~~~~ 251 (289)
.+|+..|..+...+-....+
T Consensus 210 ~~A~~~A~~~~~~a~~~a~~ 229 (263)
T PRK09355 210 LEAAAAACAVYGIAGELAAE 229 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999887777655544
No 77
>PLN02630 pfkB-type carbohydrate kinase family protein
Probab=99.54 E-value=6.6e-14 Score=128.10 Aligned_cols=127 Identities=20% Similarity=0.162 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHHHHh-----cCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhCCCCCCHHH
Q 022988 99 SFLNTILQVVEKLRS-----INPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEAD 173 (289)
Q Consensus 99 ~~~~~~~~~l~~~k~-----~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g~~~~~~~~ 173 (289)
.+.+....+++.++. + +..++|||++... ++|-.++ +.+. .+++++|+++||+.|+..+ +.++
T Consensus 132 i~~e~~~~~~~~a~~v~~D~~--g~~~~~Dp~~~~~-~~~~~~~--~~~~-~~L~~iDil~~ne~Ea~~l------~~~~ 199 (335)
T PLN02630 132 ILPETLERMVEICDVVVVDIQ--ALIRVFDPVDGTV-KLVKLEE--TGFY-DMLPRIGFLKASSEEALFI------DVEE 199 (335)
T ss_pred CcHHHHHHHHHHhhhheeccC--ceEEecCCccccc-ccchhhH--HHHH-HHHHhCCEEEecHHHHhhc------CHHH
Confidence 335667778888876 5 7889999976311 1221011 1122 3789999999999999986 1122
Q ss_pred HHHHHHHHHhcCCCeEEEeeeecCCcEEEecc-----------cCCCCCchHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 022988 174 GREACKILHAAGPAKVVITSINIDGNLFLIGS-----------HQKEKGTGDLMTALLLGWSNKYRDNLDIAAELAVSSL 242 (289)
Q Consensus 174 ~~~a~~~L~~~g~~~Vvvt~g~~~G~~~~~~~-----------~~dt~GAGD~f~g~l~~~l~~~g~~~~~A~~~A~a~a 242 (289)
+. +. ..|+||.|. +|+++..++ .+|||||||+|+|+|++++.+ |+++++|+++|++++
T Consensus 200 ---~~----~~--~~vvvt~G~-~G~~~~~~~~~~~~~~~~v~~vDttGAGDaF~agfi~~l~~-g~~~~~a~~~A~a~a 268 (335)
T PLN02630 200 ---VR----QK--CCVIVTNGK-KGCRIYWKDGEMRVPPFPAIQVDPTGAGDSFLGGFVAGLVQ-GLAVPDAALLGNYFG 268 (335)
T ss_pred ---Hc----cC--CEEEEEECC-CceEEEECCeeEEeCCCCCCCCCCCChHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 11 22 389999997 898776542 279999999999999999998 999999999999987
Q ss_pred HHHHHH
Q 022988 243 QALLQR 248 (289)
Q Consensus 243 ~~~l~~ 248 (289)
..++++
T Consensus 269 a~~v~~ 274 (335)
T PLN02630 269 SLAVEQ 274 (335)
T ss_pred HHHhCc
Confidence 555543
No 78
>PRK10565 putative carbohydrate kinase; Provisional
Probab=99.33 E-value=1.9e-10 Score=110.68 Aligned_cols=201 Identities=16% Similarity=0.173 Sum_probs=112.8
Q ss_pred CCCeEEEEeccCccCccchhhcHHHHHhCCCcceeeceEEeec----CCCCCCcceeeCCHHHHHHHHHHHHhCCCcccC
Q 022988 13 ETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSN----HTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYT 88 (289)
Q Consensus 13 ~~~~vl~i~g~~~~G~vG~~~~~~~l~~~Gv~~~~v~~~~~~~----~tg~~~i~g~~l~~~~~~~~~~~l~~~~~~~~~ 88 (289)
++|+|+.|+|+..+.++..-+....| +.|.....+.+.. +. .+-..++....+++++++.++ . .++
T Consensus 253 ~~G~vliigGs~~~~GA~~Laa~aAl-r~GaGlv~~~~~~-~~~~~~~~~~Pe~~~~~~~~~~~~~~~---~-----~~~ 322 (508)
T PRK10565 253 DHGRLLIIGGDHGTAGAIRMAGEAAL-RSGAGLVRVLTRS-ENIAPLLTARPELMVHELTPDSLEESL---E-----WAD 322 (508)
T ss_pred CCCeEEEEECCCCCccHHHHHHHHHH-HhCCCeEEEEeCh-hhHHHHhhcCceeEEecCCHhHHHHHh---h-----cCC
Confidence 57889999998754444333222333 4454443332211 00 001111111122333333332 2 256
Q ss_pred EEEEee-cCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHh-hcCCceEEcCCHHHHHHhhCC
Q 022988 89 HLLTGY-IGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREK-VVPVASMLTPNQFEAEQLTGF 166 (289)
Q Consensus 89 ~v~~G~-l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~-ll~~~dii~pN~~E~~~L~g~ 166 (289)
++.+|. ++..+.. .++++.+++. +.|+|+|| .+ +..+... ......+||||..|+++|+|.
T Consensus 323 a~viGpGlg~~~~~---~~~~~~~~~~--~~P~VLDA----da--------L~ll~~~~~~~~~~VLTPh~gE~~rL~~~ 385 (508)
T PRK10565 323 VVVIGPGLGQQEWG---KKALQKVENF--RKPMLWDA----DA--------LNLLAINPDKRHNRVITPHPGEAARLLGC 385 (508)
T ss_pred EEEEeCCCCCCHHH---HHHHHHHHhc--CCCEEEEc----hH--------HHHHhhCccccCCeEECCCHHHHHHHhCC
Confidence 777765 3332221 3344555554 78999999 32 1111110 011257999999999999996
Q ss_pred CCCCHH-HHHHHHHHHHhcCCCeEEEeeeec-----CCcEEEecc--c-CCCCCchHHHHHHHHHHHccCCCCHHHHHHH
Q 022988 167 RIGSEA-DGREACKILHAAGPAKVVITSINI-----DGNLFLIGS--H-QKEKGTGDLMTALLLGWSNKYRDNLDIAAEL 237 (289)
Q Consensus 167 ~~~~~~-~~~~a~~~L~~~g~~~Vvvt~g~~-----~G~~~~~~~--~-~dt~GAGD~f~g~l~~~l~~~g~~~~~A~~~ 237 (289)
.....+ +..++++.+.++....|++|+... ++.+++... + ..++|+||+++|.+++.+++ |.+..+|+..
T Consensus 386 ~~~~v~~~~~~~a~~~a~~~~~~vvlKG~~~iI~~~~~~~~~~~~G~~~ma~~GsGDvLaGiIaalla~-g~~~~~Aa~~ 464 (508)
T PRK10565 386 SVAEIESDRLLSARRLVKRYGGVVVLKGAGTVIAAEPDALAIIDVGNAGMASGGMGDVLSGIIGALLGQ-KLSPYDAACA 464 (508)
T ss_pred ChhhhhhhHHHHHHHHHHHhCCEEEEeCCCcEEEcCCceEEEECCCCCCCCCCChHHHHHHHHHHHHHc-CCCHHHHHHH
Confidence 543322 444567777765555788877531 123333321 2 45799999999999999999 9898888877
Q ss_pred HHHH
Q 022988 238 AVSS 241 (289)
Q Consensus 238 A~a~ 241 (289)
|+..
T Consensus 465 a~~l 468 (508)
T PRK10565 465 GCVA 468 (508)
T ss_pred HHHH
Confidence 7654
No 79
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=99.18 E-value=2.6e-10 Score=99.62 Aligned_cols=200 Identities=20% Similarity=0.171 Sum_probs=111.3
Q ss_pred EEEEeccCccCccchhhcHHHHHhCCCcceeeceEE--eec-CCCCCCcceeeCCH-HHHHHHHHHHHhCCCcccCEEEE
Q 022988 17 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQ--FSN-HTGYPTFKGQVLNG-QQLCDLIEGLEANNLLYYTHLLT 92 (289)
Q Consensus 17 vl~i~g~~~~G~vG~~~~~~~l~~~Gv~~~~v~~~~--~~~-~tg~~~i~g~~l~~-~~~~~~~~~l~~~~~~~~~~v~~ 92 (289)
|+.|.|+..+.++..-+... ..+.|.+...+.+.. ... ..-..++....++. +++ ...+.+. ++|++.+
T Consensus 1 VlvigGS~~~~GA~~Laa~a-Alr~GaGlV~~~~~~~~~~~~~~~~Pe~m~~~~~~~~~~-~~~~~~~-----~~~av~i 73 (242)
T PF01256_consen 1 VLVIGGSEGYPGAAILAARA-ALRSGAGLVTLATPESIAPVIASYSPEAMVSPLPSDEDV-EILELLE-----KADAVVI 73 (242)
T ss_dssp EEEEE-BTSSHHHHHHHHHH-HHHTT-SEEEEEECGCCHHHHHHHTTTSEEEETTHCCHH-HHHHHHC-----H-SEEEE
T ss_pred CEEEECCCCCCCHHHHHHHH-HHHHCCCcEEEEEcHHHHHHHHhCCceeEEecccchhhh-hhHhhhc-----cCCEEEe
Confidence 68899987665555433322 335565554443321 000 00011221223332 233 3334444 3778999
Q ss_pred ee-cCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHH--hhcCCceEEcCCHHHHHHhhCCCCC
Q 022988 93 GY-IGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYRE--KVVPVASMLTPNQFEAEQLTGFRIG 169 (289)
Q Consensus 93 G~-l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~--~ll~~~dii~pN~~E~~~L~g~~~~ 169 (289)
|. +..... ..++++.+.+. ..++|+|. +.+..+.. .......|+|||..|+.+|++....
T Consensus 74 GPGlg~~~~---~~~~~~~~~~~--~~p~VlDA------------DaL~~l~~~~~~~~~~~IlTPH~gE~~rL~~~~~~ 136 (242)
T PF01256_consen 74 GPGLGRDEE---TEELLEELLES--DKPLVLDA------------DALNLLAENPKKRNAPVILTPHPGEFARLLGKSVE 136 (242)
T ss_dssp -TT-SSSHH---HHHHHHHHHHH--CSTEEEEC------------HHHHCHHHCCCCSSSCEEEE-BHHHHHHHHTTTCH
T ss_pred ecCCCCchh---hHHHHHHHHhh--cceEEEeh------------HHHHHHHhccccCCCCEEECCCHHHHHHHhCCccc
Confidence 86 333222 22244444444 56799998 22222222 1345678999999999999998653
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEeeeec-----CCcEEEecc--c-CCCCCchHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 022988 170 SEADGREACKILHAAGPAKVVITSINI-----DGNLFLIGS--H-QKEKGTGDLMTALLLGWSNKYRDNLDIAAELAVSS 241 (289)
Q Consensus 170 ~~~~~~~a~~~L~~~g~~~Vvvt~g~~-----~G~~~~~~~--~-~dt~GAGD~f~g~l~~~l~~~g~~~~~A~~~A~a~ 241 (289)
..++..++++++.+.....|++|+... +|.+|++.. + .-+.|+||+++|.+++.++| +.++.+|+..|...
T Consensus 137 ~~~~~~~~a~~~a~~~~~~vvLKG~~t~I~~p~~~~~~n~~gn~~la~gGsGDvLaGii~~llaq-~~~~~~Aa~~av~l 215 (242)
T PF01256_consen 137 IQEDRIEAAREFAKEYGAVVVLKGAVTIIASPGGRVYVNPTGNPGLATGGSGDVLAGIIAGLLAQ-GYDPFEAACLAVYL 215 (242)
T ss_dssp HCCSHHHHHHHHHHHHTSEEEEESTSSEEEEETSEEEEE----GGGSSTTHHHHHHHHHHHHHHH-TSSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhhcCcEEEEeCCCcEEEecCcceeEeCCCCCCCCCCCcccHHHHHHHHHHHc-cCCHHHHHHHHHHH
Confidence 224455667777654334788887431 244444322 2 56889999999999999999 99999998877744
No 80
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=99.00 E-value=4.6e-08 Score=84.46 Aligned_cols=154 Identities=20% Similarity=0.174 Sum_probs=106.4
Q ss_pred EEEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcC--CceEEcCCHHHHHHhhCC
Q 022988 89 HLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVP--VASMLTPNQFEAEQLTGF 166 (289)
Q Consensus 89 ~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~--~~dii~pN~~E~~~L~g~ 166 (289)
.|.+|.|.. +..+.+..+++.+++. +.|+|+||+-... ...+..+..+++. +.++|+.|..|...|.|.
T Consensus 60 ~INIGTL~~-~~~~~m~~A~~~An~~--~~PvvLDPVgvgA------t~~R~~~~~~LL~~~~~~~IrGN~sEI~~Lag~ 130 (265)
T COG2145 60 LINIGTLSA-ERIQAMRAAIKAANES--GKPVVLDPVGVGA------TKFRTKFALELLAEVKPAAIRGNASEIAALAGE 130 (265)
T ss_pred EEeeccCCh-HHHHHHHHHHHHHHhc--CCCEEecCccCCc------hHHHHHHHHHHHHhcCCcEEeccHHHHHHHhcc
Confidence 467787754 5688888999999998 9999999986531 1222223334554 479999999999999975
Q ss_pred CC--------CCHHHHHHHHHHHHhcCCCeEEEeeeec---CCc--EEEe-ccc--CCCCCchHHHHHHHHHHHccCCCC
Q 022988 167 RI--------GSEADGREACKILHAAGPAKVVITSINI---DGN--LFLI-GSH--QKEKGTGDLMTALLLGWSNKYRDN 230 (289)
Q Consensus 167 ~~--------~~~~~~~~a~~~L~~~g~~~Vvvt~g~~---~G~--~~~~-~~~--~dt~GAGD~f~g~l~~~l~~~g~~ 230 (289)
.. ...++..++++.+.+.....|++|+-.+ +|. ++.. +.+ ...||+||.+.|..+++++. ..+
T Consensus 131 ~~~~kGVDa~~~~~~~~~~a~~~A~~~~~vvvvTG~vD~Isdg~~~~~i~nG~pll~~ItGtGCllgav~aaF~av-~~d 209 (265)
T COG2145 131 AGGGKGVDAGDGAADAIEAAKKAAQKYGTVVVVTGEVDYISDGTRVVVIHNGSPLLGKITGTGCLLGAVVAAFLAV-EKD 209 (265)
T ss_pred cccccccccccchhhHHHHHHHHHHHhCcEEEEECCeeEEEcCCeEEEEECCCcHHhhhhccccHHHHHHHHHHhc-CCC
Confidence 42 2345666777777654445777777431 222 2222 223 35699999999999999987 666
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHh
Q 022988 231 -LDIAAELAVSSLQALLQRTVND 252 (289)
Q Consensus 231 -~~~A~~~A~a~a~~~l~~~~~~ 252 (289)
..+|...|+.+-..+-+...+.
T Consensus 210 ~~~~A~~~A~~~~~iAge~A~~~ 232 (265)
T COG2145 210 PLLDAAAEACAVYGIAGELAAER 232 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888888887776666666554
No 81
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=98.96 E-value=3.3e-08 Score=86.06 Aligned_cols=152 Identities=20% Similarity=0.205 Sum_probs=97.8
Q ss_pred EEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhc--CCceEEcCCHHHHHHhhCCC
Q 022988 90 LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVV--PVASMLTPNQFEAEQLTGFR 167 (289)
Q Consensus 90 v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll--~~~dii~pN~~E~~~L~g~~ 167 (289)
+.+|.+ +++..+.+..+.+.++++ ++|+||||+-... . ..+..+..+|+ .++++|+.|..|...|.|..
T Consensus 55 iNiGTl-~~~~~~~m~~A~~~A~~~--~~PvVLDPVgvGa-----s-~~R~~~~~~LL~~~~~~vIrGN~sEI~aLag~~ 125 (246)
T PF02110_consen 55 INIGTL-TDERIEAMKKAAKAANEL--GIPVVLDPVGVGA-----S-KFRTEFALELLNNYKPTVIRGNASEIAALAGED 125 (246)
T ss_dssp EESTTS-SHHHHHHHHHHHHHHHHT--T--EEEE-TTBTT-----B-HHHHHHHHHHHCHS--SEEEEEHHHHHHHHTCC
T ss_pred EECCCC-CHhHHHHHHHHHHHHHHc--CCCEEEeCcccCC-----c-HHHHHHHHHHHHhCCCcEEEeCHHHHHHHhCcC
Confidence 444644 456788899999999998 9999999986531 1 22222223466 47899999999999999865
Q ss_pred CC--------CHHHHHHHHHHHHhcCCCeEEEeeeec---CC-cEE-Eecc-c--CCCCCchHHHHHHHHHHHccCCCCH
Q 022988 168 IG--------SEADGREACKILHAAGPAKVVITSINI---DG-NLF-LIGS-H--QKEKGTGDLMTALLLGWSNKYRDNL 231 (289)
Q Consensus 168 ~~--------~~~~~~~a~~~L~~~g~~~Vvvt~g~~---~G-~~~-~~~~-~--~dt~GAGD~f~g~l~~~l~~~g~~~ 231 (289)
.. +.++..+.+++|.++....|++|+-.+ +| ..+ +..+ + ...||+||++.+.++++++. ..+.
T Consensus 126 ~~~kGVDs~~~~~~~~~~a~~lA~k~~~vVvvTG~~D~Isdg~~~~~i~nG~~~l~~itGtGC~lgaliaaf~av-~~d~ 204 (246)
T PF02110_consen 126 SKAKGVDSGDSDEDAIEAAKQLAQKYNCVVVVTGEVDYISDGNRVYRIPNGSPLLSKITGTGCMLGALIAAFLAV-AEDP 204 (246)
T ss_dssp CCSCSSSSSCGSHHHHHHHHHHHHHTTSEEEEESSSEEEEESSCEEEECSSSGGGGGSTTHHHHHHHHHHHHHCC-CSSH
T ss_pred CCCCCcCcCCcchHHHHHHHHHHHhcCCEEEEecCCcEEECCCeEEEeCCCChHhcceeccchHHHHHHHHHHhc-cccc
Confidence 32 123456788888876555777777421 11 111 1111 2 34699999999999999987 6677
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022988 232 DIAAELAVSSLQALLQRTVN 251 (289)
Q Consensus 232 ~~A~~~A~a~a~~~l~~~~~ 251 (289)
..|+..|..+-..+-+...+
T Consensus 205 ~~aa~~a~~~~~~Age~A~~ 224 (246)
T PF02110_consen 205 LEAAVAAVALYGIAGELAAE 224 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 77767777665555544443
No 82
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=98.84 E-value=1.8e-07 Score=83.37 Aligned_cols=192 Identities=21% Similarity=0.212 Sum_probs=103.6
Q ss_pred CCCCeEEEEeccCccCccchhhcHHHHHhCCCcceeeceEEeecC----CCCCCcceeeCCHHHHHHHHHHHHhCCCccc
Q 022988 12 SETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNH----TGYPTFKGQVLNGQQLCDLIEGLEANNLLYY 87 (289)
Q Consensus 12 ~~~~~vl~i~g~~~~G~vG~~~~~~~l~~~Gv~~~~v~~~~~~~~----tg~~~i~g~~l~~~~~~~~~~~l~~~~~~~~ 87 (289)
-+.|+|+.|+|+.-+++...-+....+ +.|.+...+-+.. +.. +-..++....+............. .+
T Consensus 30 g~~G~vliigG~~~y~GA~~laa~aAl-~~GaglV~v~~~~-~~~~~~~s~~Pe~mv~~~~~~~~~~~~~~~~-----~~ 102 (284)
T COG0063 30 GDYGRVLIIGGSRGYTGAPVLAALAAL-RAGAGLVSLASPP-EAASALKSYLPELMVIEVEGKKLLEERELVE-----RA 102 (284)
T ss_pred CCCCeEEEEcCCCCCCCHHHHHHHHHH-HhCCCeEEEecch-hhhhhHhhcCcceeEeecccchhhHHhhhhc-----cC
Confidence 356789999999766555443332233 4555544433221 011 011111111111111111111111 36
Q ss_pred CEEEEee-cC-CHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHH--Hhhc-CCceEEcCCHHHHHH
Q 022988 88 THLLTGY-IG-SVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYR--EKVV-PVASMLTPNQFEAEQ 162 (289)
Q Consensus 88 ~~v~~G~-l~-~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~--~~ll-~~~dii~pN~~E~~~ 162 (289)
|++.+|. ++ .+...+.+.++++..+ .++|+|+- +- ..+. ..+. ..-.|+|||..|+++
T Consensus 103 ~avviGpGlG~~~~~~~~~~~~l~~~~-----~p~ViDAD----aL--------~~la~~~~~~~~~~~VlTPH~gEf~r 165 (284)
T COG0063 103 DAVVIGPGLGRDAEGQEALKELLSSDL-----KPLVLDAD----AL--------NLLAELPDLLDERKVVLTPHPGEFAR 165 (284)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHhccC-----CCEEEeCc----HH--------HHHHhCcccccCCcEEECCCHHHHHH
Confidence 7888884 33 3334455555444321 68999982 21 1011 0122 123899999999999
Q ss_pred hhCCCCCC-HHHHHHHHHHHHhcCCCeEEEeeeec-----CCcEEEecc--c-CCCCCchHHHHHHHHHHHccCC
Q 022988 163 LTGFRIGS-EADGREACKILHAAGPAKVVITSINI-----DGNLFLIGS--H-QKEKGTGDLMTALLLGWSNKYR 228 (289)
Q Consensus 163 L~g~~~~~-~~~~~~a~~~L~~~g~~~Vvvt~g~~-----~G~~~~~~~--~-~dt~GAGD~f~g~l~~~l~~~g 228 (289)
|+|.++.+ ..+-.++++++.++....||+|+... +|..+.+.. + .-+.|+||+++|.+.+.|+| +
T Consensus 166 L~g~~~~~~~~~r~~~a~~~a~~~~~vvVLKG~~tvI~~~~g~~~~n~~G~~~ma~GGtGDvLaGii~alLAq-~ 239 (284)
T COG0063 166 LLGTEVDEIEVDRLEAARELAAKYGAVVVLKGAVTVIADPDGEVFVNPTGNPGMATGGTGDVLAGIIGALLAQ-G 239 (284)
T ss_pred hcCCcccccccchHHHHHHHHHHcCCEEEEeCCCCEEEcCCCcEEEcCCCCHHhccCcchHHHHHHHHHHHhC-C
Confidence 99965433 23445667777765566888887531 123333321 1 34679999999999999998 6
No 83
>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=98.79 E-value=6.7e-08 Score=82.33 Aligned_cols=182 Identities=16% Similarity=0.208 Sum_probs=101.9
Q ss_pred cHHHHHhCCCcceeeceEE---------eecCCCCCCc-----ceeeCCHHHHHHHHHHHHhCCCcccCEEEEeecCCHh
Q 022988 34 AVFPLQLLGYDVDPIHSVQ---------FSNHTGYPTF-----KGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVS 99 (289)
Q Consensus 34 ~~~~l~~~Gv~~~~v~~~~---------~~~~tg~~~i-----~g~~l~~~~~~~~~~~l~~~~~~~~~~v~~G~l~~~~ 99 (289)
.+.-|++.||++++.+... .+..+|...+ ..++++.+++.++ ++.+..|+++. +- ...+
T Consensus 73 lLddl~~rgIdishcpftd~~pp~ssiI~~r~s~trTil~~dks~p~vT~~dF~kv--dl~qy~WihfE----~R-np~e 145 (308)
T KOG2947|consen 73 LLDDLRRRGIDISHCPFTDHSPPFSSIIINRNSGTRTILYCDKSLPDVTATDFEKV--DLTQYGWIHFE----AR-NPSE 145 (308)
T ss_pred HHHHHHhcCCCcccCccccCCCCcceEEEecCCCceEEEEecCCCccccHHHhhhc--ccceeeeEEEe----cC-ChHH
Confidence 3344778888877665321 1122332222 1246777777754 45555554421 11 1223
Q ss_pred HHHHHHHHHHHHHhcCC---CceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhCCCCCCHHHHHH
Q 022988 100 FLNTILQVVEKLRSINP---NLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGRE 176 (289)
Q Consensus 100 ~~~~~~~~l~~~k~~~~---~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g~~~~~~~~~~~ 176 (289)
..+.+..+++. ..+-| ++.+.+|-- + ..+.... ++..+|++....+=++.+ |- .+.++
T Consensus 146 tlkM~~~I~~~-N~r~pe~qrI~vSvd~e---n--------~req~~~-l~am~DyVf~sK~~a~~~-gf-----ks~re 206 (308)
T KOG2947|consen 146 TLKMLQRIDAH-NTRQPEEQRIRVSVDVE---N--------PREQLFQ-LFAMCDYVFVSKDVAKHL-GF-----KSPRE 206 (308)
T ss_pred HHHHHHHHHHh-hcCCCccceEEEEEEec---C--------cHHHHHH-HhhcccEEEEEHHHHhhh-cc-----CCHHH
Confidence 34444433332 22212 355666651 0 0122223 778999999988766665 32 24455
Q ss_pred HHHHHHh---c-CCCeEEEeeeec--------CCcEEEecc-----cCCCCCchHHHHHHHHHH-HccCCCCHHHHHHHH
Q 022988 177 ACKILHA---A-GPAKVVITSINI--------DGNLFLIGS-----HQKEKGTGDLMTALLLGW-SNKYRDNLDIAAELA 238 (289)
Q Consensus 177 a~~~L~~---~-g~~~Vvvt~g~~--------~G~~~~~~~-----~~dt~GAGD~f~g~l~~~-l~~~g~~~~~A~~~A 238 (289)
+++.|.. + +++-|+|---.. +|.+|..+. .+|+.|+||+|+|+++++ +.+ ++++.||++||
T Consensus 207 a~~~l~~r~~~~~pkpv~I~~w~~eGA~~l~adg~yfev~a~~ppkvVD~lg~~DtF~A~vIyA~lk~-~r~l~eAvdfg 285 (308)
T KOG2947|consen 207 ACEGLYGRVPKGKPKPVLICPWASEGAGALGADGKYFEVDAFKPPKVVDTLGAGDTFNAGVIYALLKQ-GRSLAEAVDFG 285 (308)
T ss_pred HHHHHHhhcccCCCCcEEEeccccccccccCCCCCEEecCCCCCccceeeccCCCcchHHHHHHHHHh-hhhHHHHHHHH
Confidence 5555543 2 355566653111 344444332 279999999999999988 555 89999999999
Q ss_pred HHHH
Q 022988 239 VSSL 242 (289)
Q Consensus 239 ~a~a 242 (289)
++++
T Consensus 286 ~rva 289 (308)
T KOG2947|consen 286 NRVA 289 (308)
T ss_pred HHhh
Confidence 9885
No 84
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=98.71 E-value=7.9e-07 Score=76.59 Aligned_cols=227 Identities=22% Similarity=0.252 Sum_probs=118.9
Q ss_pred CCeeeccCCCCCCeEEEEeccCccCccchhhcHHHHHhCCCcceeeceEEeec--CCCCCC--cceeeCCH-HHHHHHHH
Q 022988 3 PPILSLALPSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSN--HTGYPT--FKGQVLNG-QQLCDLIE 77 (289)
Q Consensus 3 ~~~~~~~~~~~~~~vl~i~g~~~~G~vG~~~~~~~l~~~Gv~~~~v~~~~~~~--~tg~~~--i~g~~l~~-~~~~~~~~ 77 (289)
||.+.-----..|+|.+|+|.--|.++---+++. -...|-|..++.+...-. -.+|.. |.-+.++. +.++...+
T Consensus 19 P~L~~~kHKGq~GrvgViGGc~eYTGAPYFaa~s-a~~~GaDL~HiFCe~~Aa~vIKsYsPdLIVHP~l~~~~av~~i~k 97 (306)
T KOG3974|consen 19 PPLLSNKHKGQSGRVGVIGGCLEYTGAPYFAAIS-ALRVGADLSHIFCEPEAAVVIKSYSPDLIVHPVLDQENAVDIIEK 97 (306)
T ss_pred CCccCcccCCCccceEEEcccccccCccHHHHHH-HHHhccceeeeeechhHHHHHhhcCCceeecccccCCchHhHHHH
Confidence 5555444233457999999986544433322222 235777777775532000 001111 10011221 12222222
Q ss_pred HHHhCCCcccCEEEEee-cC-CHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcC--CceEE
Q 022988 78 GLEANNLLYYTHLLTGY-IG-SVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVP--VASML 153 (289)
Q Consensus 78 ~l~~~~~~~~~~v~~G~-l~-~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~--~~dii 153 (289)
.++ +.+++++|. |+ ++.....+.++++.++.+ ++|+|+|. .| +|+-++..+. ++. ..-|+
T Consensus 98 ~L~-----RlhavVIGPGLGRdp~~~k~i~~iley~~~~--dvP~VIDa----DG-L~Lv~q~~e~----l~~~~~~viL 161 (306)
T KOG3974|consen 98 LLQ-----RLHAVVIGPGLGRDPAILKEIAKILEYLRGK--DVPLVIDA----DG-LWLVEQLPER----LIGGYPKVIL 161 (306)
T ss_pred HHh-----heeEEEECCCCCCCHHHHHHHHHHHHHHhcC--CCcEEEcC----Cc-eEehhhchhh----hhccCceeee
Confidence 233 245777775 44 666688899999999988 99999998 55 6643322221 222 23699
Q ss_pred cCCHHHHHHhhCCCCCC---HHHHHHHHHHHHhcCCCeEEEeeeecCCcEEEecc----------cCCCCCchHHHHHHH
Q 022988 154 TPNQFEAEQLTGFRIGS---EADGREACKILHAAGPAKVVITSINIDGNLFLIGS----------HQKEKGTGDLMTALL 220 (289)
Q Consensus 154 ~pN~~E~~~L~g~~~~~---~~~~~~a~~~L~~~g~~~Vvvt~g~~~G~~~~~~~----------~~dt~GAGD~f~g~l 220 (289)
|||.-|+.+|++....+ ...+...+.+| +.-.|+-++-. + .++..+. ...-.|-||.++|.+
T Consensus 162 TPNvvEFkRLcd~~l~~~d~~~~~~~L~~~l---~nv~vvqKG~~-D-~ils~~~ev~~~s~eGs~kRcGGQGDiLaGsl 236 (306)
T KOG3974|consen 162 TPNVVEFKRLCDAELDKVDSHSQMQHLAAEL---MNVTVVQKGES-D-KILSPDSEVRVCSTEGSLKRCGGQGDILAGSL 236 (306)
T ss_pred CCcHHHHHHHHHHhhccccchHHHHHHHHHh---cCeEEEEecCC-c-eeeCCCCeeEEccCCCCccccCCCcchhhhHH
Confidence 99999999999864322 22333333333 22234444422 2 1221111 234569999999998
Q ss_pred HHHHccC---CCCHHHHHHHHHHHHHHHHHHHHH
Q 022988 221 LGWSNKY---RDNLDIAAELAVSSLQALLQRTVN 251 (289)
Q Consensus 221 ~~~l~~~---g~~~~~A~~~A~a~a~~~l~~~~~ 251 (289)
+..++.. ..+..+++-.|..+....++....
T Consensus 237 a~fl~w~k~~~~e~~~~~~~a~~a~s~~vr~a~r 270 (306)
T KOG3974|consen 237 ATFLSWAKLLSGEQDSAAFLAAVAGSIMVRRAGR 270 (306)
T ss_pred HHHHHHHHhccCCccchhhhhhhhhHHHHHHHHH
Confidence 8765431 223334555555444444444433
No 85
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=98.15 E-value=3.5e-05 Score=71.41 Aligned_cols=195 Identities=16% Similarity=0.145 Sum_probs=111.7
Q ss_pred ccCccchhhcHHHHHhCCCcceeeceEEeecCCCCCCcceeeCCHHHHHHHHHHHHhCCCcccCEEEEeecCCHhHHHHH
Q 022988 25 VQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTI 104 (289)
Q Consensus 25 ~~G~vG~~~~~~~l~~~Gv~~~~v~~~~~~~~tg~~~i~g~~l~~~~~~~~~~~l~~~~~~~~~~v~~G~l~~~~~~~~~ 104 (289)
.+|+|+... ...+..+|.++..+..+. +.++...+ ...+.+.++ .-+++.+ .+.|+ +.+......+
T Consensus 375 a~GGVarN~-A~a~~~lg~d~~liSavG--~d~n~~~~--~~~~~~~~e-~~~dl~~-----a~~I~---~DsNiS~~~M 440 (614)
T KOG3009|consen 375 AMGGVARNH-ADALARLGCDSVLISAVG--DDNNGHFF--RQNSHKIVE-SNEDLLS-----ADFIL---LDSNISVPVM 440 (614)
T ss_pred hccchhhhH-HHHHHHhcCCeeEEEEec--cCCcchhh--hhhhhhhhh-hhhhhhc-----CCEEE---EcCCCCHHHH
Confidence 357776542 345788999998888775 32221110 112222221 1122222 33343 2334556677
Q ss_pred HHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhh-CCCC-CC------HHHHHH
Q 022988 105 LQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLT-GFRI-GS------EADGRE 176 (289)
Q Consensus 105 ~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~-g~~~-~~------~~~~~~ 176 (289)
.++++ +|.+ ..+|+|.|--.+. ..+.++-.+....+.++||..|+-... +..+ ++ .+...+
T Consensus 441 a~il~-ak~~--k~~V~fEPTd~~k--------~~K~fk~l~v~~i~~i~PN~~Ell~a~k~~~v~~nps~~q~~~~~~~ 509 (614)
T KOG3009|consen 441 ARILE-AKKH--KKQVWFEPTDIDK--------VKKVFKTLLVGAITAISPNANELLKAAKLCHVSVNPSVIQTADGVLE 509 (614)
T ss_pred HHHHH-hhhc--cCceEecCCCchh--------hhhhhhhcceeeEEeeCCCHHHHHHHhhcCceeeChhhhccchHHHH
Confidence 88888 7776 7899999943321 112222212225799999999974332 2221 11 123333
Q ss_pred HHHHHH---hcCCCeEEEeeeecCCcEEEecc-----------c-------CCCCCchHHHHHHHHHHHccCCCCHHHHH
Q 022988 177 ACKILH---AAGPAKVVITSINIDGNLFLIGS-----------H-------QKEKGTGDLMTALLLGWSNKYRDNLDIAA 235 (289)
Q Consensus 177 a~~~L~---~~g~~~Vvvt~g~~~G~~~~~~~-----------~-------~dt~GAGD~f~g~l~~~l~~~g~~~~~A~ 235 (289)
..+.+. .......++|... +|.+....+ + ++..|+||+|++++.+.++. +.++.+++
T Consensus 510 ~~~~~~~k~~~~~s~~I~tl~~-~G~l~~yr~k~g~l~~~s~~p~~~~~n~vsvsgaGdsf~~g~i~~l~~-~~~v~es~ 587 (614)
T KOG3009|consen 510 LIEKEKTKLLLNTSIFIVTLAN-KGSLVVYRNKLGQLEFQSLPPPLQMNNVVSVSGAGDSFNSGVIAGLAH-NKTVVESL 587 (614)
T ss_pred HHHHHHHHhhcccceEEEEecc-CceEEEecCCCCCcccccCCCcccccceeEeccCCcccccceeehhhc-CcchHhhc
Confidence 333322 2344568888875 787643211 0 34569999999999999998 99999999
Q ss_pred HHHHHHHHHHH
Q 022988 236 ELAVSSLQALL 246 (289)
Q Consensus 236 ~~A~a~a~~~l 246 (289)
.-+..+++..+
T Consensus 588 ~gg~~~~rall 598 (614)
T KOG3009|consen 588 QGGQECARALL 598 (614)
T ss_pred cccHHHHHHHH
Confidence 98876654444
No 86
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=92.44 E-value=2.4 Score=40.49 Aligned_cols=85 Identities=15% Similarity=0.118 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhCC---CC-----CCHHHH
Q 022988 103 TILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGF---RI-----GSEADG 174 (289)
Q Consensus 103 ~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g~---~~-----~~~~~~ 174 (289)
...+.++.+++.++++++-+.-.. +.+.+....+...++|++|.+-.|+.|+..+... +. .+.+++
T Consensus 238 ~~~~~i~~l~~~~~~i~iH~E~As------~~~~~i~~~v~~~Ilp~VDSlGmNEqELa~l~~~~g~~~~~i~~~~~~~v 311 (453)
T PRK14039 238 DSLAQLKWWKSKNEKLRIHAELGH------FASKEIANSVFLILAGIVDSIGMNEDELAMLANLHGIPAEGILEMNAEAI 311 (453)
T ss_pred HHHHHHHHHHhcCCCceEEEEecC------cccHHHHHHHHHHhhcccccccCCHHHHHHHHHHcccchhhHhhcCHHHH
Confidence 334445555445567787776532 2455666666667999999999999999888754 22 246777
Q ss_pred HHHHHHHHh-cCCCeEEEee
Q 022988 175 REACKILHA-AGPAKVVITS 193 (289)
Q Consensus 175 ~~a~~~L~~-~g~~~Vvvt~ 193 (289)
.+++..|++ .|.+.+.|..
T Consensus 312 ~ea~~~l~~~~~le~l~vHT 331 (453)
T PRK14039 312 GEAACQLASESGLQRLIIHT 331 (453)
T ss_pred HHHHHHHHHHcCCCEEEEEe
Confidence 888888874 6877766644
No 87
>PRK14038 ADP-dependent glucokinase; Provisional
Probab=91.07 E-value=7.9 Score=37.01 Aligned_cols=113 Identities=10% Similarity=0.048 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhCCCcccC-EEEEeec--CCHhHHHHHHHHHHHHHh-cCCCceEEEccccccCCCccCChhHHHHHHHh
Q 022988 70 QQLCDLIEGLEANNLLYYT-HLLTGYI--GSVSFLNTILQVVEKLRS-INPNLIYVCDPVMGDEGKLYVPSELVSVYREK 145 (289)
Q Consensus 70 ~~~~~~~~~l~~~~~~~~~-~v~~G~l--~~~~~~~~~~~~l~~~k~-~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ 145 (289)
+++...++.+.. .+| +|++|+- ......+.+.++.+.++. +.+++++=+.-.. +.+.+..+.+..
T Consensus 212 eef~~~l~ei~~----~~Dl~vlSG~q~l~~~~~~~~l~~~~~~l~~l~~~~i~iH~EfAs------~~d~~~r~~i~~- 280 (453)
T PRK14038 212 PEFRERFEEIAK----KAELAIISGLQALTEENYREPFETVREHLKVLNERGIPAHLEFAF------TPDETVREEILG- 280 (453)
T ss_pred HHHHHHHHhhcc----CCCEEEEEchhhhccccHHHHHHHHHHHHHhcCcCCceEEEEeec------cchHHHHHHHHh-
Confidence 345444444332 356 4777763 221112223333333332 1235665555422 134566666765
Q ss_pred hcCCceEEcCCHHHHHHhhC---C--------CCC--CHHHHHHHHHHHHh-cCCCeEEEee
Q 022988 146 VVPVASMLTPNQFEAEQLTG---F--------RIG--SEADGREACKILHA-AGPAKVVITS 193 (289)
Q Consensus 146 ll~~~dii~pN~~E~~~L~g---~--------~~~--~~~~~~~a~~~L~~-~g~~~Vvvt~ 193 (289)
++|.+|-+-.|+.|+..++. . +.. +.+++.+++.+|++ .|.+.|.+..
T Consensus 281 ilp~vDSlGmNE~ELa~ll~~lg~~~l~~~i~~~~~~~~~~v~e~~~~L~~~~gleri~vHT 342 (453)
T PRK14038 281 LLGKFYSVGLNEVELASIMEVMGEKTLAEKLLAKDPVDPIAVTEAMLKLAEKTGVKRIHFHT 342 (453)
T ss_pred hCccccccccCHHHHHHHHHHhccchhhhhhhhcCccCHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 89999999999999988774 2 111 56778888888875 6877766644
No 88
>PRK03979 ADP-specific phosphofructokinase; Provisional
Probab=90.43 E-value=6 Score=37.93 Aligned_cols=114 Identities=16% Similarity=0.239 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHhCCCcccC-EEEEeecC--C--------HhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhH
Q 022988 70 QQLCDLIEGLEANNLLYYT-HLLTGYIG--S--------VSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSEL 138 (289)
Q Consensus 70 ~~~~~~~~~l~~~~~~~~~-~v~~G~l~--~--------~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~ 138 (289)
+++...++.+.. .+| +|++|+-. . ....+.+.+.++.+++.+|++++-|.-.. +.+.+.
T Consensus 210 eef~~~L~ei~~----~~D~avlSG~q~i~~~y~dg~~~~~~l~r~~~~i~~L~~~~~~i~iH~E~As------~~~~~i 279 (463)
T PRK03979 210 DELKEFLPEIGK----MVDGAILSGYQGIKEEYSDGKTAEYYLKRAKEDIKLLKKKNKDIKIHVEFAS------IQNREI 279 (463)
T ss_pred HHHHHHHHhhcc----CCCEEEEechhhhhccccccccHHHHHHHHHHHHHHHhhCCCCceEEEEecc------ccCHHH
Confidence 455555554321 356 57777632 2 11244455566667666678888776532 235566
Q ss_pred HHHHHHhhcCCceEEcCCHHHHHHhh---CCC--------CCCHHHHHHHHHHHHh-cCCCeEEEee
Q 022988 139 VSVYREKVVPVASMLTPNQFEAEQLT---GFR--------IGSEADGREACKILHA-AGPAKVVITS 193 (289)
Q Consensus 139 ~~~l~~~ll~~~dii~pN~~E~~~L~---g~~--------~~~~~~~~~a~~~L~~-~g~~~Vvvt~ 193 (289)
...+...++|.+|.+-.|+.|+..++ |.. ....+++.+++..|++ .|.+.|.+..
T Consensus 280 r~~i~~~ilp~vDSlGmNE~ELa~l~~~lg~~~l~~~i~~~~~i~~v~~a~~~L~~~~~leri~vHT 346 (463)
T PRK03979 280 RKKIITYILPHVDSVGMDETEIANILNVLGYEELSERILKESRIEDVIEGAKILLDELNLERVQVHT 346 (463)
T ss_pred HHHHHHhhccccccccCCHHHHHHHHHHhcCcchhhhhhccccHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 66666678999999999999998765 321 1235677788888874 6777665543
No 89
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=86.74 E-value=14 Score=35.28 Aligned_cols=113 Identities=18% Similarity=0.212 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHhCCCcccC-EEEEeecCCH----------hHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhH
Q 022988 70 QQLCDLIEGLEANNLLYYT-HLLTGYIGSV----------SFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSEL 138 (289)
Q Consensus 70 ~~~~~~~~~l~~~~~~~~~-~v~~G~l~~~----------~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~ 138 (289)
+++...+..+.. .+| +|++|+-.-. ...+...+.++.+++ +|++++-|.-.. +.+.+.
T Consensus 197 ~~l~~~~~~i~~----~~d~~vlSG~q~m~~~y~dg~~~~~~~er~~~~i~~L~~-~~~i~iH~E~As------~~~~~l 265 (446)
T TIGR02045 197 DQLRKFLPEIGE----PVDGAILSGYQGIKEEYSDGKTAKYYLERAKEDIELLKK-NKDLKIHVEFAS------IQNREI 265 (446)
T ss_pred HHHHHhhhhhhh----cccEEEEEchhhhhhhccCCccHhHHHHHHHHHHHHHhh-CCCCeEEEEecc------cccHHH
Confidence 345555544432 255 5777763211 134445566666655 368887776532 235566
Q ss_pred HHHHHHhhcCCceEEcCCHHHHHHhh---CCC--------CCCHHHHHHHHHHHHh-cCCCeEEEee
Q 022988 139 VSVYREKVVPVASMLTPNQFEAEQLT---GFR--------IGSEADGREACKILHA-AGPAKVVITS 193 (289)
Q Consensus 139 ~~~l~~~ll~~~dii~pN~~E~~~L~---g~~--------~~~~~~~~~a~~~L~~-~g~~~Vvvt~ 193 (289)
...+...++|.+|.+-.|+.|+..++ |.. ..+.+++.+++..|++ .|.+.|.+..
T Consensus 266 ~~~i~~~ilp~vDSlGMNE~ELa~ll~~lg~~~l~~~i~~~~~i~~vi~a~~~l~~~~~leri~vHT 332 (446)
T TIGR02045 266 RKKVVTNIFPHVDSVGMDEAEIANVLSVLGYDELSDRIFRYNRIEDLILGAKILLDELNLEVVQVHT 332 (446)
T ss_pred HHHHHHhhccccccccCCHHHHHHHHHHhcCCchhhhhhccccHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 66666678999999999999998877 321 1235677788888774 5777666644
No 90
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=86.57 E-value=20 Score=30.74 Aligned_cols=108 Identities=11% Similarity=0.090 Sum_probs=63.4
Q ss_pred ceeeCCHHHHHHHHHHHHhCCCc--ccC-EEEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHH
Q 022988 63 KGQVLNGQQLCDLIEGLEANNLL--YYT-HLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELV 139 (289)
Q Consensus 63 ~g~~l~~~~~~~~~~~l~~~~~~--~~~-~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~ 139 (289)
.|..++++++-..+..-. .++ ... +.++|-= +-.+.+.+.++++.+|+. |+.+.+|. +|. .+.+..
T Consensus 15 ~g~~~t~eel~~~~~~~~--~f~~~sggGVt~SGGE-Pllq~~fl~~l~~~~k~~--gi~~~leT----nG~--~~~~~~ 83 (213)
T PRK10076 15 IGRDITLDALEREVMKDD--IFFRTSGGGVTLSGGE-VLMQAEFATRFLQRLRLW--GVSCAIET----AGD--APASKL 83 (213)
T ss_pred cCcccCHHHHHHHHHhhh--HhhcCCCCEEEEeCch-HHcCHHHHHHHHHHHHHc--CCCEEEEC----CCC--CCHHHH
Confidence 456677766655432211 110 112 3444421 112356788999999998 99999999 442 333333
Q ss_pred HHHHHhhcCCc-----eEEcCCHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCCe
Q 022988 140 SVYREKVVPVA-----SMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAK 188 (289)
Q Consensus 140 ~~l~~~ll~~~-----dii~pN~~E~~~L~g~~~~~~~~~~~a~~~L~~~g~~~ 188 (289)
+. +++.+ |+--.+......++|.. .+.+.+-++.+.+.|...
T Consensus 84 ~~----l~~~~D~~l~DiK~~d~~~~~~~tG~~---~~~il~nl~~l~~~g~~v 130 (213)
T PRK10076 84 LP----LAKLCDEVLFDLKIMDATQARDVVKMN---LPRVLENLRLLVSEGVNV 130 (213)
T ss_pred HH----HHHhcCEEEEeeccCCHHHHHHHHCCC---HHHHHHHHHHHHhCCCcE
Confidence 32 44444 55566777788999964 356667777888777643
No 91
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=78.82 E-value=49 Score=31.52 Aligned_cols=148 Identities=18% Similarity=0.213 Sum_probs=81.6
Q ss_pred CCCCeEEEEeccCccCccchhh-cHHHHHhCCCcceeeceEEeecCCCCCCcceeeCCHHHHHHHHHHHHhCCCcccCEE
Q 022988 12 SETGRVLSIQSHTVQGYVGNKS-AVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHL 90 (289)
Q Consensus 12 ~~~~~vl~i~g~~~~G~vG~~~-~~~~l~~~Gv~~~~v~~~~~~~~tg~~~i~g~~l~~~~~~~~~~~l~~~~~~~~~~v 90 (289)
...|.|+...|.-..|+--..+ ...-|++.|..+-.+.+++ |+. ---+|+..+-+.+. ++
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~------~Rp-----AA~eQL~~La~q~~------v~-- 157 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADT------YRP-----AAIEQLKQLAEQVG------VP-- 157 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEeccc------CCh-----HHHHHHHHHHHHcC------Cc--
Confidence 4566778887877555443222 2234677777654444433 111 00134444433332 22
Q ss_pred EEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHH--HHHhhCCCC
Q 022988 91 LTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFE--AEQLTGFRI 168 (289)
Q Consensus 91 ~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E--~~~L~g~~~ 168 (289)
+.|.-....+.+...+.++.+|+.+- =.+++|.. |.+-.+++..+.+++ --.++.|++.= ...++|+
T Consensus 158 ~f~~~~~~~Pv~Iak~al~~ak~~~~-DvvIvDTA----GRl~ide~Lm~El~~----Ik~~~~P~E~llVvDam~GQ-- 226 (451)
T COG0541 158 FFGSGTEKDPVEIAKAALEKAKEEGY-DVVIVDTA----GRLHIDEELMDELKE----IKEVINPDETLLVVDAMIGQ-- 226 (451)
T ss_pred eecCCCCCCHHHHHHHHHHHHHHcCC-CEEEEeCC----CcccccHHHHHHHHH----HHhhcCCCeEEEEEecccch--
Confidence 22232233568888999999998632 25889994 444366665554433 33455565531 1234453
Q ss_pred CCHHHHHHHHHHHHh-cCCCeEEEee
Q 022988 169 GSEADGREACKILHA-AGPAKVVITS 193 (289)
Q Consensus 169 ~~~~~~~~a~~~L~~-~g~~~Vvvt~ 193 (289)
++...++.+.+ .+...||+|-
T Consensus 227 ----dA~~~A~aF~e~l~itGvIlTK 248 (451)
T COG0541 227 ----DAVNTAKAFNEALGITGVILTK 248 (451)
T ss_pred ----HHHHHHHHHhhhcCCceEEEEc
Confidence 66677777764 5778899995
No 92
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=67.85 E-value=16 Score=32.29 Aligned_cols=86 Identities=17% Similarity=0.228 Sum_probs=52.1
Q ss_pred EEEEeccCccCccchhh---cHHHHHhCCCcceeeceEEeecCCCCCCcceeeCCHHHHHHHHHHHHhCCCcccC-EEEE
Q 022988 17 VLSIQSHTVQGYVGNKS---AVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYT-HLLT 92 (289)
Q Consensus 17 vl~i~g~~~~G~vG~~~---~~~~l~~~Gv~~~~v~~~~~~~~tg~~~i~g~~l~~~~~~~~~~~l~~~~~~~~~-~v~~ 92 (289)
++++++-...|..=+.. ..+.|...|+++..+.++. + .++++...+....+ ..| +|.+
T Consensus 6 iI~vG~ElL~G~ivdtNa~~la~~L~~~G~~v~~~~~Vg-D-------------~~~~I~~~l~~a~~----r~D~vI~t 67 (255)
T COG1058 6 IIAVGDELLSGRIVDTNAAFLADELTELGVDLARITTVG-D-------------NPDRIVEALREASE----RADVVITT 67 (255)
T ss_pred EEEEccceecCceecchHHHHHHHHHhcCceEEEEEecC-C-------------CHHHHHHHHHHHHh----CCCEEEEC
Confidence 67777777888876444 3345999999987777663 1 12344444433332 245 4566
Q ss_pred eecCCHhHHHHHHHHHHHHHhcCCCceEEEccc
Q 022988 93 GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPV 125 (289)
Q Consensus 93 G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~ 125 (289)
|-|++ ...|...+.+.++- |.++++|+.
T Consensus 68 GGLGP-T~DDiT~e~vAka~----g~~lv~~~~ 95 (255)
T COG1058 68 GGLGP-THDDLTAEAVAKAL----GRPLVLDEE 95 (255)
T ss_pred CCcCC-CccHhHHHHHHHHh----CCCcccCHH
Confidence 66653 34566666665554 678888873
No 93
>PF04587 ADP_PFK_GK: ADP-specific Phosphofructokinase/Glucokinase conserved region; InterPro: IPR007666 Although ATP is the most common phosphoryl group donor for kinases, certain hyperthermophilic archaea, such as Thermococcus litoralis and Pyrococcus furiosus, utilise unusual ADP-dependent glucokinases (ADPGKs) and phosphofructokinases (ADPPKKs) in their glycolytic pathways [, , ]. ADPGKs and ADPPFKs exhibit significant similarity, and form an ADP-dependent kinase (ADPK) family, which was tentatively named the PFKC family []. A ~460-residue ADPK domain is also found in a bifunctional ADP-dependent gluco/phosphofructo- kinase (ADP-GK/PFK) from Methanocaldococcus jannaschii (Methanococcus jannaschii) as well as in homologous hypothetical proteins present in several eukaryotes []. The whole structure of the ADPK domain can be divided into large and small alpha/beta subdomains. The larger subdomain, which carries the ADP binding site, consists of a twisted 12-stranded beta sheet flanked on both faces by 13 alpha helices and three 3(10) helices, forming an alpha/beta 3-layer sandwich. The smaller subdomain, which covers the active site, forms an alpha/beta two-layer structure containing 5 beta strands and four alpha helices. The ADP molecule is buried in a shallow pocket in the large subdomain. The binding of substrate sugar induces a structural change, the small domain closing to form a complete substrate sugar binding site [, , ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 1GC5_A 1L2L_A 3DRW_B 1U2X_A 1UA4_A.
Probab=66.02 E-value=28 Score=33.33 Aligned_cols=112 Identities=19% Similarity=0.196 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhCCCcccC-EEEEeec--CC--------HhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhH
Q 022988 70 QQLCDLIEGLEANNLLYYT-HLLTGYI--GS--------VSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSEL 138 (289)
Q Consensus 70 ~~~~~~~~~l~~~~~~~~~-~v~~G~l--~~--------~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~ 138 (289)
+++...++.+.. .+| +|++|+- .. +...+.+.+.++.+++ +++++|-+.-.. +.+++.
T Consensus 197 e~f~~~l~~~~~----~~d~~vlSGlq~l~~~~~d~~~~~~~l~~~~~~i~~l~~-~~~~~iH~E~As------~~d~~l 265 (444)
T PF04587_consen 197 EEFFEALEEIAF----KPDLAVLSGLQMLDEFYFDGETYEERLKRLKEQIKLLKS-NPDIPIHLELAS------FADEEL 265 (444)
T ss_dssp HHHHHSHHHHHT----T-SEEEEE-GGG--TB-TTSTCHHHHHHHHHHHHHHHH--HTT-EEEEE----------SSHHH
T ss_pred HHHHHHHHhhcc----CCCEEEEeccccchhhccchhHHHHHHHHHHHHHHhccC-CCCCceEEEecc------ccCHHH
Confidence 455554444221 366 4677752 21 1223344555556664 358888776532 245677
Q ss_pred HHHHHHhhcCCceEEcCCHHHHHHhhC---CCC--------C--CHHHHHHHHHHHHh-cCCCeEEEe
Q 022988 139 VSVYREKVVPVASMLTPNQFEAEQLTG---FRI--------G--SEADGREACKILHA-AGPAKVVIT 192 (289)
Q Consensus 139 ~~~l~~~ll~~~dii~pN~~E~~~L~g---~~~--------~--~~~~~~~a~~~L~~-~g~~~Vvvt 192 (289)
++.+...++|++|.+=.|+.|+..|+. .+. . +...+.++...|.+ .|...|.+-
T Consensus 266 ~~~i~~~ilp~vDSlGmNEqEL~~l~~~lg~~~~~~~~~~~~~v~~~~v~~~~~~L~~~~~l~RIhvH 333 (444)
T PF04587_consen 266 RKEILEKILPHVDSLGMNEQELANLLSVLGGPELSERIDSYPRVEVDQVLEALIWLLKEYGLTRIHVH 333 (444)
T ss_dssp HHHHHHHHGGGSSEEEEEHHHHHHHHHHTT-HHHHHHHHHSSSHHHHHHHHHHHHHHHHH--SEEEEE
T ss_pred HHHHHHHhhccccccccCHHHHHHHHHHhCCCccccccccCCCccHHHHHHHHHHHHHHcCCCEEEEE
Confidence 777776799999999999999998753 210 1 11234566666664 476655553
No 94
>PLN02891 IMP cyclohydrolase
Probab=65.46 E-value=30 Score=33.72 Aligned_cols=114 Identities=15% Similarity=0.210 Sum_probs=57.8
Q ss_pred cCCCCCCeEEEEeccCccCccchhhcHHHHHhCCCcceee------------ceEEeecCCCCCCc-cee--eCCH----
Q 022988 9 ALPSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPI------------HSVQFSNHTGYPTF-KGQ--VLNG---- 69 (289)
Q Consensus 9 ~~~~~~~~vl~i~g~~~~G~vG~~~~~~~l~~~Gv~~~~v------------~~~~~~~~tg~~~i-~g~--~l~~---- 69 (289)
|.+++..+-..|+-+|-.|-+ ...+.|.+.|+..... +...++.-||+.++ .|. .|.|
T Consensus 16 ~~~~~~~krALISVsDKtgi~---~fAk~L~~~gveIiSTgGTak~L~e~Gi~v~~Vsd~TgfPEiL~GRVKTLHPkIhg 92 (547)
T PLN02891 16 SSPSSGKKQALISLSDKTDLA---LLANGLQELGYTIVSTGGTASALEAAGVSVTKVEELTNFPEMLDGRVKTLHPAVHG 92 (547)
T ss_pred CCCCccccEEEEEEecccCHH---HHHHHHHHCCCEEEEcchHHHHHHHcCCceeeHHhccCCchhhCCcccccCchhhh
Confidence 455666665666656644433 2223344444433211 12233456777665 221 1111
Q ss_pred -----HHHHHHHHHHHhCCCcccCEEEEeecCCHhHHH--------HHH-------HHHHHHHhcCCCceEEEccc
Q 022988 70 -----QQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLN--------TIL-------QVVEKLRSINPNLIYVCDPV 125 (289)
Q Consensus 70 -----~~~~~~~~~l~~~~~~~~~~v~~G~l~~~~~~~--------~~~-------~~l~~~k~~~~~~~vv~Dp~ 125 (289)
.+-..-++.+.+..+..+|.|++..-|-++... +++ .+++.+-+++..+.|++||.
T Consensus 93 GILa~r~~~~h~~~l~~~~I~~IDlVvVNLYPF~~tv~~~~~~~ee~IEnIDIGGpsmlRAAAKN~~~V~Vv~dP~ 168 (547)
T PLN02891 93 GILARRDQEHHMEALNEHGIGTIDVVVVNLYPFYDTVTSGGISFEDGVENIDIGGPAMIRAAAKNHKDVLVVVDPA 168 (547)
T ss_pred hhhcCCCCHHHHHHHHHcCCCceeeEEEeccChHHHHhcCCCCHHHHHHhccCCcHHHHHHHHhCCCCeEEECCHH
Confidence 122233445666666568888777655443211 121 24555555567899999994
No 95
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=63.18 E-value=83 Score=30.53 Aligned_cols=97 Identities=19% Similarity=0.163 Sum_probs=52.2
Q ss_pred HHHHhCC-CcceeeceEEeecCCCCCCcceeeCCHHHHHHHHHHHHhCCCcccCEEEEeecCCHhHHHHHHHHHHHHHhc
Q 022988 36 FPLQLLG-YDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSI 114 (289)
Q Consensus 36 ~~l~~~G-v~~~~v~~~~~~~~tg~~~i~g~~l~~~~~~~~~~~l~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~ 114 (289)
..|++.| .++..+-... ..++.+++.+. +.+. .+|+|.+..... ......++++.+|+.
T Consensus 30 a~L~~~G~~~V~iiD~~~------------~~~~~~~~~~~---l~~~---~pdvVgis~~t~--~~~~a~~~~~~~k~~ 89 (497)
T TIGR02026 30 GALLDAGYHDVTFLDAMT------------GPLTDEKLVER---LRAH---CPDLVLITAITP--AIYIACETLKFARER 89 (497)
T ss_pred HHHHhcCCcceEEecccc------------cCCCHHHHHHH---HHhc---CcCEEEEecCcc--cHHHHHHHHHHHHHH
Confidence 3478888 5665443211 23444555443 3332 266654443322 244566788888888
Q ss_pred CCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHH
Q 022988 115 NPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAE 161 (289)
Q Consensus 115 ~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~ 161 (289)
+|+++||+==.... +..+ +.+. -.+.+|++...+.|..
T Consensus 90 ~P~~~iV~GG~h~t----~~~~---~~l~--~~p~vD~Vv~GEGE~~ 127 (497)
T TIGR02026 90 LPNAIIVLGGIHPT----FMFH---QVLT--EAPWIDFIVRGEGEET 127 (497)
T ss_pred CCCCEEEEcCCCcC----cCHH---HHHh--cCCCccEEEeCCcHHH
Confidence 89998887421111 0111 1111 2367899999888743
No 96
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=58.77 E-value=1.5e+02 Score=27.36 Aligned_cols=112 Identities=13% Similarity=0.168 Sum_probs=62.1
Q ss_pred eCCHHHHHHHHHHHHhCCCcccCEEEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHh
Q 022988 66 VLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREK 145 (289)
Q Consensus 66 ~l~~~~~~~~~~~l~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ 145 (289)
.++.+++..+++.+.+... ..+.++| +.+....-+.++++.++++ +..+.+.. +|.+ ++++.++.+.+.
T Consensus 45 ~~~~e~~~~ii~~~~~~g~--~~v~~~G--GEPll~~~~~~il~~~~~~--g~~~~i~T----NG~l-l~~~~~~~L~~~ 113 (378)
T PRK05301 45 ELSTEEWIRVLREARALGA--LQLHFSG--GEPLLRKDLEELVAHAREL--GLYTNLIT----SGVG-LTEARLAALKDA 113 (378)
T ss_pred CCCHHHHHHHHHHHHHcCC--cEEEEEC--CccCCchhHHHHHHHHHHc--CCcEEEEC----CCcc-CCHHHHHHHHHc
Confidence 5677888888877766543 2234444 1111122356788888876 66655544 5543 455666655441
Q ss_pred hcC--CceEEcCCHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCCeE
Q 022988 146 VVP--VASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKV 189 (289)
Q Consensus 146 ll~--~~dii~pN~~E~~~L~g~~~~~~~~~~~a~~~L~~~g~~~V 189 (289)
-+. ..++=.++.+....+.|.. .+.+.+.+.++.|.+.|.+..
T Consensus 114 g~~~v~iSldg~~~e~~d~irg~~-g~f~~~~~~i~~l~~~g~~v~ 158 (378)
T PRK05301 114 GLDHIQLSFQDSDPELNDRLAGTK-GAFAKKLAVARLVKAHGYPLT 158 (378)
T ss_pred CCCEEEEEecCCCHHHHHHHcCCC-chHHHHHHHHHHHHHCCCceE
Confidence 121 1223334455555666643 245667777888888776643
No 97
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=58.70 E-value=1.7e+02 Score=27.77 Aligned_cols=111 Identities=13% Similarity=0.111 Sum_probs=58.6
Q ss_pred ceeeCCHHHHHHHH-HHHHhCCCcccCE-EEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEc-cccccCCCccCChhHH
Q 022988 63 KGQVLNGQQLCDLI-EGLEANNLLYYTH-LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCD-PVMGDEGKLYVPSELV 139 (289)
Q Consensus 63 ~g~~l~~~~~~~~~-~~l~~~~~~~~~~-v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~D-p~~~~~g~~~~~~~~~ 139 (289)
.|..++.+++-+.+ +++.-..- ..+. .++|- ..+.....+.++++.+|+. ++++.+. . +|..+.+++.+
T Consensus 50 ~g~~~t~~evl~ev~~d~~~~~~-~~ggVtisGG-Gepl~~~~l~eLl~~lk~~--gi~taI~~T----nG~~l~~~e~~ 121 (404)
T TIGR03278 50 NGDFIPPQVVLGEVQTSLGFRTG-RDTKVTISGG-GDVSCYPELEELTKGLSDL--GLPIHLGYT----SGKGFDDPEIA 121 (404)
T ss_pred cCCcCCHHHHHHHHHHHHHHhcC-CCCEEEEECC-cccccCHHHHHHHHHHHhC--CCCEEEeCC----CCcccCCHHHH
Confidence 45566666554443 33331110 1232 33332 1222345678899999987 7777775 5 55444555555
Q ss_pred HHHHHhhcC--CceEEcCCHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 022988 140 SVYREKVVP--VASMLTPNQFEAEQLTGFRIGSEADGREACKILHA 183 (289)
Q Consensus 140 ~~l~~~ll~--~~dii~pN~~E~~~L~g~~~~~~~~~~~a~~~L~~ 183 (289)
+.+.+.-+. ..|+=..|.+-...++|.+- .+.+.+.++.|.+
T Consensus 122 ~~L~~~gld~v~iSvka~dpe~h~kl~G~~~--a~~ILe~L~~L~e 165 (404)
T TIGR03278 122 EFLIDNGVREVSFTVFATDPELRREWMKDPT--PEASLQCLRRFCE 165 (404)
T ss_pred HHHHHcCCCEEEEecccCCHHHHHHHhCCCC--HHHHHHHHHHHHh
Confidence 544331011 22333566777788888642 2455666666665
No 98
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=57.23 E-value=79 Score=23.58 Aligned_cols=73 Identities=18% Similarity=0.174 Sum_probs=40.9
Q ss_pred cchhhcHHHHHhCCCcceeeceEEeecCCCCCCcceeeCCHHHHHHHHHHHHhCCCcccCEEEEeecCCHhHHHHHHHHH
Q 022988 29 VGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVV 108 (289)
Q Consensus 29 vG~~~~~~~l~~~Gv~~~~v~~~~~~~~tg~~~i~g~~l~~~~~~~~~~~l~~~~~~~~~~v~~G~l~~~~~~~~~~~~l 108 (289)
.|.......|++.|+++..+... .+.+++.+ .+.+. ++|.|.+... .........+++
T Consensus 15 lGl~~la~~l~~~G~~v~~~d~~---------------~~~~~l~~---~~~~~---~pd~V~iS~~-~~~~~~~~~~l~ 72 (121)
T PF02310_consen 15 LGLLYLAAYLRKAGHEVDILDAN---------------VPPEELVE---ALRAE---RPDVVGISVS-MTPNLPEAKRLA 72 (121)
T ss_dssp HHHHHHHHHHHHTTBEEEEEESS---------------B-HHHHHH---HHHHT---TCSEEEEEES-SSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeEEEECCC---------------CCHHHHHH---HHhcC---CCcEEEEEcc-CcCcHHHHHHHH
Confidence 35444445588889876544211 22234433 33332 2566554331 223456667888
Q ss_pred HHHHhcCCCceEEEc
Q 022988 109 EKLRSINPNLIYVCD 123 (289)
Q Consensus 109 ~~~k~~~~~~~vv~D 123 (289)
+.+|+.+|++++++=
T Consensus 73 ~~~k~~~p~~~iv~G 87 (121)
T PF02310_consen 73 RAIKERNPNIPIVVG 87 (121)
T ss_dssp HHHHTTCTTSEEEEE
T ss_pred HHHHhcCCCCEEEEE
Confidence 889888888887764
No 99
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=53.01 E-value=1.1e+02 Score=25.35 Aligned_cols=73 Identities=15% Similarity=0.058 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHH---HhhCCCCCCHHHHHH
Q 022988 100 FLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAE---QLTGFRIGSEADGRE 176 (289)
Q Consensus 100 ~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~---~L~g~~~~~~~~~~~ 176 (289)
+.+.+..+-+..+.+ ++.|+.||-. ..+..+..+.+ .+|.+--......++. .=.|.+..+.+++.+
T Consensus 34 ~~~~i~~i~~~~~~r--gVIIfTDpD~-------~GekIRk~i~~-~vp~~khafi~~~~a~~~~~~iGVE~As~e~I~~ 103 (174)
T TIGR00334 34 KDETINLIKKAQKKQ--GVIILTDPDF-------PGEKIRKKIEQ-HLPGYENCFIPKHLAKPNKKKIGVEEASVEAIIA 103 (174)
T ss_pred CHHHHHHHHHHhhcC--CEEEEeCCCC-------chHHHHHHHHH-HCCCCeEEeeeHHhcCcCCCCcccCCCCHHHHHH
Confidence 344444444445555 8999999933 22344444544 5676654444455543 125666667777777
Q ss_pred HHHHHH
Q 022988 177 ACKILH 182 (289)
Q Consensus 177 a~~~L~ 182 (289)
+.+.+.
T Consensus 104 AL~~~~ 109 (174)
T TIGR00334 104 ALENVH 109 (174)
T ss_pred HHHHhc
Confidence 766543
No 100
>COG4381 Mu-like prophage protein gp46 [Function unknown]
Probab=52.28 E-value=22 Score=27.49 Aligned_cols=54 Identities=22% Similarity=0.178 Sum_probs=42.0
Q ss_pred hHHH----HHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHhhhhcCC-----CCCCCcccc
Q 022988 213 GDLM----TALLLGWSNKYRDNLDIAAELAVSSLQALLQRTVNDYVTAGF-----DPQSSSLEI 267 (289)
Q Consensus 213 GD~f----~g~l~~~l~~~g~~~~~A~~~A~a~a~~~l~~~~~~~~~~~~-----~~~~~~~~~ 267 (289)
||+| .|.-+..|.+ .+.+.+-...|..|+.++++--.++++-..+ .|+|+++-|
T Consensus 50 gDs~~~~~~GSrLwlL~R-eK~l~~V~~~Ae~YA~eALqwlv~sg~a~si~v~A~~p~~~~L~L 112 (135)
T COG4381 50 GDSTAASALGSRLWLLRR-EKDLQRVSLLAEQYADEALQWLVKSGRADSIQVRASQPQHGRLIL 112 (135)
T ss_pred cccccccchhhHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHhcCccceEEEEeecCCCcEEEE
Confidence 5666 7778888888 8999999999999999999988887554332 277777555
No 101
>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....
Probab=50.64 E-value=1.1e+02 Score=26.01 Aligned_cols=103 Identities=20% Similarity=0.250 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHhCCCcccCEEEEee-cCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHH--
Q 022988 68 NGQQLCDLIEGLEANNLLYYTHLLTGY-IGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYRE-- 144 (289)
Q Consensus 68 ~~~~~~~~~~~l~~~~~~~~~~v~~G~-l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~-- 144 (289)
+.++..++++.+.. .++++++|. +-.....+.+.++++.++++ +.+|++|--..|-| .....+.+
T Consensus 11 ~~~~a~~i~~~~~~----~v~~iKvG~~l~~~~G~~~l~~~i~~l~~~--~~~I~~D~K~~Dig------~t~~~~~~~~ 78 (226)
T PF00215_consen 11 DLEEALRIADELGD----YVDIIKVGTPLFLAYGLEALPEIIEELKER--GKPIFLDLKLGDIG------NTVARYAEAG 78 (226)
T ss_dssp SHHHHHHHHHHHGG----GSSEEEEEHHHHHHHCHHHHHHHHHHHHHT--TSEEEEEEEE-SSH------HHHHHHHHSC
T ss_pred CHHHHHHHHHHhcC----cceEEEEChHHHhcCChhhHHHHHHHHHHh--cCCEeeeeeecccc------hHHHHHHHHh
Confidence 34555666666554 367899995 22222333678899999998 78999998655421 22222221
Q ss_pred --hhcCCceEEcCCHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-CCeEEEe
Q 022988 145 --KVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAG-PAKVVIT 192 (289)
Q Consensus 145 --~ll~~~dii~pN~~E~~~L~g~~~~~~~~~~~a~~~L~~~g-~~~Vvvt 192 (289)
..-..+|++|.|-. .| .+.++.+.+...+.+ ...++++
T Consensus 79 ~~~~~~gaD~vTv~~~-----~G-----~~tl~~~~~~a~~~~~~~~~~v~ 119 (226)
T PF00215_consen 79 FAAFELGADAVTVHPF-----AG-----DDTLEAAVKAAKKHGRKGVFVVD 119 (226)
T ss_dssp HHHHTTTESEEEEEGT-----TH-----HHHHHHHHHHHHHTTESEEEEEE
T ss_pred hhhhcCCCcEEEEecc-----CC-----HHHHHHHHHHHhccCCcceEEEE
Confidence 12347899988753 23 245566666666665 2334443
No 102
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=47.77 E-value=2e+02 Score=25.37 Aligned_cols=78 Identities=14% Similarity=0.129 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcC------CHHHHHHhh--CCCC----
Q 022988 101 LNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTP------NQFEAEQLT--GFRI---- 168 (289)
Q Consensus 101 ~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~p------N~~E~~~L~--g~~~---- 168 (289)
.+-+..+.+..++. |++++-+| .++..++.+ .+.+|++.. |..=+..+. |.++
T Consensus 65 ~~gl~~L~~~~~~~--Gl~~~Tev---------~d~~~v~~~----~e~vdilqIgs~~~~n~~LL~~va~tgkPVilk~ 129 (250)
T PRK13397 65 LQGIRYLHEVCQEF--GLLSVSEI---------MSERQLEEA----YDYLDVIQVGARNMQNFEFLKTLSHIDKPILFKR 129 (250)
T ss_pred HHHHHHHHHHHHHc--CCCEEEee---------CCHHHHHHH----HhcCCEEEECcccccCHHHHHHHHccCCeEEEeC
Confidence 34455555555555 89998888 334444433 235666643 322223332 3332
Q ss_pred ---CCHHHHHHHHHHHHhcCCCeEEEee
Q 022988 169 ---GSEADGREACKILHAAGPAKVVITS 193 (289)
Q Consensus 169 ---~~~~~~~~a~~~L~~~g~~~Vvvt~ 193 (289)
.+.+++..+++++.+.|.+.|+++.
T Consensus 130 G~~~t~~e~~~A~e~i~~~Gn~~i~L~e 157 (250)
T PRK13397 130 GLMATIEEYLGALSYLQDTGKSNIILCE 157 (250)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEEc
Confidence 3678999999999999998888876
No 103
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=47.69 E-value=1.6e+02 Score=25.00 Aligned_cols=60 Identities=20% Similarity=0.232 Sum_probs=35.0
Q ss_pred cCEEEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhc-CCceEEcCCH
Q 022988 87 YTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVV-PVASMLTPNQ 157 (289)
Q Consensus 87 ~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll-~~~dii~pN~ 157 (289)
++.+++|+ +.-.+.-.++++.+++. +.+|++|--..|-| .....+.+..+ ..+|++|.|-
T Consensus 24 v~~iKvg~---~l~~~~g~~~i~~l~~~--~~~i~~DlK~~DIg------~tv~~~~~~~~~~gad~~Tvh~ 84 (216)
T cd04725 24 VCAVKVGL---ELFEAAGPEIVKELREL--GFLVFLDLKLGDIP------NTVAAAAEALLGLGADAVTVHP 84 (216)
T ss_pred ccEEEECH---HHHHhcCHHHHHHHHHC--CCcEEEEeecCchH------HHHHHHHHHHHhcCCCEEEECC
Confidence 56789885 22223445677888887 68999998554421 11111111122 2789988874
No 104
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=47.21 E-value=2.3e+02 Score=25.92 Aligned_cols=112 Identities=13% Similarity=0.166 Sum_probs=59.7
Q ss_pred eeCCHHHHHHHHHHHHhCCCcccCEEEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHH
Q 022988 65 QVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYRE 144 (289)
Q Consensus 65 ~~l~~~~~~~~~~~l~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~ 144 (289)
..++.+++.++++.+.+... ..+.++| +.+....-+.++++.++++ +..+.+-. +|.+ ++++.++.+.+
T Consensus 35 ~~l~~e~~~~ii~~~~~~g~--~~v~~~G--GEPll~~~~~~ii~~~~~~--g~~~~l~T----NG~l-l~~e~~~~L~~ 103 (358)
T TIGR02109 35 AELTTEEWTDVLTQAAELGV--LQLHFSG--GEPLARPDLVELVAHARRL--GLYTNLIT----SGVG-LTEARLDALAD 103 (358)
T ss_pred CCCCHHHHHHHHHHHHhcCC--cEEEEeC--ccccccccHHHHHHHHHHc--CCeEEEEe----CCcc-CCHHHHHHHHh
Confidence 35777888888877766543 2234444 1111122355788888877 66655544 5533 45566665543
Q ss_pred hhcC--CceEEcCCHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCCe
Q 022988 145 KVVP--VASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAK 188 (289)
Q Consensus 145 ~ll~--~~dii~pN~~E~~~L~g~~~~~~~~~~~a~~~L~~~g~~~ 188 (289)
.-+. ..++=-++.+....+.|.+ .+.+.+.+.++.+.+.|.+.
T Consensus 104 ~g~~~v~iSldg~~~e~~d~~rg~~-g~f~~v~~~i~~l~~~g~~v 148 (358)
T TIGR02109 104 AGLDHVQLSFQGVDEALADRIAGYK-NAFEQKLAMARAVKAAGLPL 148 (358)
T ss_pred CCCCEEEEeCcCCCHHHHHHhcCCc-cHHHHHHHHHHHHHhCCCce
Confidence 1111 1122233444445555532 23456667777777777654
No 105
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=47.15 E-value=15 Score=31.14 Aligned_cols=48 Identities=27% Similarity=0.203 Sum_probs=37.1
Q ss_pred CCceEEcCCHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCCeEEEeeee
Q 022988 148 PVASMLTPNQFEAEQLTGF-RIGSEADGREACKILHAAGPAKVVITSIN 195 (289)
Q Consensus 148 ~~~dii~pN~~E~~~L~g~-~~~~~~~~~~a~~~L~~~g~~~Vvvt~g~ 195 (289)
.+..++.|++...+..... +.+=...+++.++.|+++|++..++++|-
T Consensus 66 ~Rl~llqp~~~qv~~~v~~~k~~lT~Gi~eLv~~L~~~~~~v~liSGGF 114 (227)
T KOG1615|consen 66 ARLSLLQPLQVQVEQFVIKQKPTLTPGIRELVSRLHARGTQVYLISGGF 114 (227)
T ss_pred HHHHHhcccHHHHHHHHhcCCCccCCCHHHHHHHHHHcCCeEEEEcCCh
Confidence 3567899999988776643 44323568899999999999999999873
No 106
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=45.87 E-value=2.5e+02 Score=26.02 Aligned_cols=113 Identities=15% Similarity=0.030 Sum_probs=64.4
Q ss_pred eeCCHHHHHHHHHHHHhCCCcccCEEEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHH
Q 022988 65 QVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYRE 144 (289)
Q Consensus 65 ~~l~~~~~~~~~~~l~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~ 144 (289)
..++.+++.+..+.+.+...-.+ .+..|.-++....+.+.++++.+++..|.+.+-+.| .+.+..+.+++
T Consensus 101 ~~Ls~eEI~~~a~~~~~~Gv~~i-~lvgGe~p~~~~~e~l~eii~~Ik~~~p~i~Iei~~---------lt~e~~~~Lk~ 170 (366)
T TIGR02351 101 KKLNEEEIEREIEAIKKSGFKEI-LLVTGESEKAAGVEYIAEAIKLAREYFSSLAIEVQP---------LNEEEYKKLVE 170 (366)
T ss_pred CcCCHHHHHHHHHHHHhCCCCEE-EEeeCCCCCCCCHHHHHHHHHHHHHhCCcccccccc---------CCHHHHHHHHH
Confidence 35678888888777766543222 233465555556788889999998765444432222 34444455554
Q ss_pred hhcCCc--eEEcCCHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCC
Q 022988 145 KVVPVA--SMLTPNQFEAEQLTG-FRIGSEADGREACKILHAAGPA 187 (289)
Q Consensus 145 ~ll~~~--dii~pN~~E~~~L~g-~~~~~~~~~~~a~~~L~~~g~~ 187 (289)
.=+... .+=+-|..-+..+.. -+..+.++..++.+.+.+.|.+
T Consensus 171 aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~ 216 (366)
T TIGR02351 171 AGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMR 216 (366)
T ss_pred cCCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCC
Confidence 222211 223455555565541 1234567777778888887765
No 107
>PRK08508 biotin synthase; Provisional
Probab=45.85 E-value=2.2e+02 Score=25.29 Aligned_cols=110 Identities=13% Similarity=0.084 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHHHHhCCCcccCEEEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhh
Q 022988 67 LNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKV 146 (289)
Q Consensus 67 l~~~~~~~~~~~l~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~l 146 (289)
++++++.+......+.....+..+..|.-.++...+.+.++++.+|+..|++.+..- .|. .+++.++.+++
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~~s-----~G~--~~~e~l~~Lk~-- 110 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIAC-----NGT--ASVEQLKELKK-- 110 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCCcEEEec-----CCC--CCHHHHHHHHH--
Confidence 677888776665544432122122234433445678888999999987555543222 121 34555554443
Q ss_pred cCCceEEcCCHHHHHHhhCCC--CCCHHHHHHHHHHHHhcCC
Q 022988 147 VPVASMLTPNQFEAEQLTGFR--IGSEADGREACKILHAAGP 186 (289)
Q Consensus 147 l~~~dii~pN~~E~~~L~g~~--~~~~~~~~~a~~~L~~~g~ 186 (289)
..+|-+-.|.+=...++... ..+.++..+..+..++.|.
T Consensus 111 -aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi 151 (279)
T PRK08508 111 -AGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGL 151 (279)
T ss_pred -cCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCC
Confidence 24566666654445454332 2344565566666666664
No 108
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=45.47 E-value=2.5e+02 Score=25.91 Aligned_cols=154 Identities=11% Similarity=0.093 Sum_probs=77.5
Q ss_pred CCCCeEEEEeccCccCccchhh-cHHHHHhCCCcceeeceEEeecCCCCCCcceeeCCHHHHHHHHHHHHhCCCcccCEE
Q 022988 12 SETGRVLSIQSHTVQGYVGNKS-AVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHL 90 (289)
Q Consensus 12 ~~~~~vl~i~g~~~~G~vG~~~-~~~~l~~~Gv~~~~v~~~~~~~~tg~~~i~g~~l~~~~~~~~~~~l~~~~~~~~~~v 90 (289)
++.+.|+.+.|.-.+|+--.-+ ....++..|..+.....++ ....-+++ ++.|.+.. .+++|
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DT--------------FRAaAiEQ-L~~w~er~--gv~vI 198 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDT--------------FRAAAIEQ-LEVWGERL--GVPVI 198 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecch--------------HHHHHHHH-HHHHHHHh--CCeEE
Confidence 4557888888888555543222 3344778887654333332 22223333 33343321 24444
Q ss_pred EEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHH--HHhhCCCC
Q 022988 91 LTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEA--EQLTGFRI 168 (289)
Q Consensus 91 ~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~--~~L~g~~~ 168 (289)
. +. ....+...+.++++.++.++-+ .+++|..-| +-......+.+++ -..++.|...++ +.|...+.
T Consensus 199 ~-~~-~G~DpAaVafDAi~~Akar~~D-vvliDTAGR----Lhnk~nLM~EL~K----I~rV~~k~~~~ap~e~llvlDA 267 (340)
T COG0552 199 S-GK-EGADPAAVAFDAIQAAKARGID-VVLIDTAGR----LHNKKNLMDELKK----IVRVIKKDDPDAPHEILLVLDA 267 (340)
T ss_pred c-cC-CCCCcHHHHHHHHHHHHHcCCC-EEEEeCccc----ccCchhHHHHHHH----HHHHhccccCCCCceEEEEEEc
Confidence 3 22 3345677889999999998333 367798544 3233333333322 223333333211 11222111
Q ss_pred CCHHHHHHHHHHHHh-cCCCeEEEee
Q 022988 169 GSEADGREACKILHA-AGPAKVVITS 193 (289)
Q Consensus 169 ~~~~~~~~a~~~L~~-~g~~~Vvvt~ 193 (289)
..-.+..+.++.+.+ -+...+++|-
T Consensus 268 ttGqnal~QAk~F~eav~l~GiIlTK 293 (340)
T COG0552 268 TTGQNALSQAKIFNEAVGLDGIILTK 293 (340)
T ss_pred ccChhHHHHHHHHHHhcCCceEEEEe
Confidence 111345555777765 4677888885
No 109
>TIGR03586 PseI pseudaminic acid synthase.
Probab=45.47 E-value=1.2e+02 Score=27.75 Aligned_cols=79 Identities=18% Similarity=0.228 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHH------HHHh--hCCCC----
Q 022988 101 LNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFE------AEQL--TGFRI---- 168 (289)
Q Consensus 101 ~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E------~~~L--~g~~~---- 168 (289)
.+...++.+.+++. |+.++..| ++.+.++.+.+ + .+++++.-..| ++.+ +|.++
T Consensus 76 ~e~~~~L~~~~~~~--Gi~~~stp---------fd~~svd~l~~-~--~v~~~KI~S~~~~n~~LL~~va~~gkPvilst 141 (327)
T TIGR03586 76 WEWHKELFERAKEL--GLTIFSSP---------FDETAVDFLES-L--DVPAYKIASFEITDLPLIRYVAKTGKPIIMST 141 (327)
T ss_pred HHHHHHHHHHHHHh--CCcEEEcc---------CCHHHHHHHHH-c--CCCEEEECCccccCHHHHHHHHhcCCcEEEEC
Confidence 45666777788887 88888888 45555554433 2 24444433322 2222 24332
Q ss_pred --CCHHHHHHHHHHHHhcCCCeEEEee
Q 022988 169 --GSEADGREACKILHAAGPAKVVITS 193 (289)
Q Consensus 169 --~~~~~~~~a~~~L~~~g~~~Vvvt~ 193 (289)
.+.+++..+++.+.+.|.+.|++-.
T Consensus 142 G~~t~~Ei~~Av~~i~~~g~~~i~Llh 168 (327)
T TIGR03586 142 GIATLEEIQEAVEACREAGCKDLVLLK 168 (327)
T ss_pred CCCCHHHHHHHHHHHHHCCCCcEEEEe
Confidence 4678999999999988886655544
No 110
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=44.44 E-value=44 Score=29.46 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEeeee
Q 022988 170 SEADGREACKILHAAGPAKVVITSIN 195 (289)
Q Consensus 170 ~~~~~~~a~~~L~~~g~~~Vvvt~g~ 195 (289)
...+++++++.+.+.| +.|++|.|.
T Consensus 113 ~V~d~~ea~~~~~~~~-~rVflt~G~ 137 (257)
T COG2099 113 EVADIEEAAEAAKQLG-RRVFLTTGR 137 (257)
T ss_pred EecCHHHHHHHHhccC-CcEEEecCc
Confidence 3456777777666655 789999886
No 111
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=42.40 E-value=2e+02 Score=24.00 Aligned_cols=94 Identities=14% Similarity=0.188 Sum_probs=51.8
Q ss_pred HHHHhCCCcceeeceEEeecCCCCCCcceeeCCHHHHHHHHHHHHhCCCcccCEEEEeecCCHhHHHHHHHHHHHHHhcC
Q 022988 36 FPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSIN 115 (289)
Q Consensus 36 ~~l~~~Gv~~~~v~~~~~~~~tg~~~i~g~~l~~~~~~~~~~~l~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~ 115 (289)
..|+..|+++.++ |..++.+++........ ++.|.+..+ .......+.++++.+|+..
T Consensus 104 ~~l~~~G~~vi~l---------------G~~~p~~~l~~~~~~~~------~d~v~lS~~-~~~~~~~~~~~i~~lr~~~ 161 (201)
T cd02070 104 TMLEANGFEVIDL---------------GRDVPPEEFVEAVKEHK------PDILGLSAL-MTTTMGGMKEVIEALKEAG 161 (201)
T ss_pred HHHHHCCCEEEEC---------------CCCCCHHHHHHHHHHcC------CCEEEEecc-ccccHHHHHHHHHHHHHCC
Confidence 3477788765322 23456666665543332 555443322 2234566788888888875
Q ss_pred C--CceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhh
Q 022988 116 P--NLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLT 164 (289)
Q Consensus 116 ~--~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~ 164 (289)
+ +++|++==. . +.++. .+.+ .+|...+|..++-.+.
T Consensus 162 ~~~~~~i~vGG~------~-~~~~~----~~~~--GaD~~~~da~~av~~~ 199 (201)
T cd02070 162 LRDKVKVMVGGA------P-VNQEF----ADEI--GADGYAEDAAEAVAIA 199 (201)
T ss_pred CCcCCeEEEECC------c-CCHHH----HHHc--CCcEEECCHHHHHHHH
Confidence 4 566555321 1 22222 2212 7888888888776553
No 112
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=41.96 E-value=1.4e+02 Score=25.98 Aligned_cols=79 Identities=16% Similarity=0.204 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCC------HHHHHHh--hCCCC----
Q 022988 101 LNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPN------QFEAEQL--TGFRI---- 168 (289)
Q Consensus 101 ~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN------~~E~~~L--~g~~~---- 168 (289)
.+...++.+.++++ |+.++..| ++.+.++.+.+ + .++.++.- ..=++.+ +|.++
T Consensus 55 ~e~~~~L~~~~~~~--gi~f~stp---------fd~~s~d~l~~-~--~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlST 120 (241)
T PF03102_consen 55 EEQHKELFEYCKEL--GIDFFSTP---------FDEESVDFLEE-L--GVPAYKIASGDLTNLPLLEYIAKTGKPVILST 120 (241)
T ss_dssp HHHHHHHHHHHHHT--T-EEEEEE----------SHHHHHHHHH-H--T-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-
T ss_pred HHHHHHHHHHHHHc--CCEEEECC---------CCHHHHHHHHH-c--CCCEEEeccccccCHHHHHHHHHhCCcEEEEC
Confidence 56677777888887 88877777 55555665543 2 23333322 2222222 34442
Q ss_pred --CCHHHHHHHHHHHHhcCCCeEEEee
Q 022988 169 --GSEADGREACKILHAAGPAKVVITS 193 (289)
Q Consensus 169 --~~~~~~~~a~~~L~~~g~~~Vvvt~ 193 (289)
.+.++++++++.+.+.|...+++-.
T Consensus 121 G~stl~EI~~Av~~~~~~~~~~l~llH 147 (241)
T PF03102_consen 121 GMSTLEEIERAVEVLREAGNEDLVLLH 147 (241)
T ss_dssp TT--HHHHHHHHHHHHHHCT--EEEEE
T ss_pred CCCCHHHHHHHHHHHHhcCCCCEEEEe
Confidence 3578888888888665655444433
No 113
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=38.73 E-value=1.2e+02 Score=22.79 Aligned_cols=71 Identities=11% Similarity=0.209 Sum_probs=37.9
Q ss_pred chhhcHHHHHhCCCcceeeceEEeecCCCCCCcceeeCCHHHHHHHHHHHHhCCCcccCEEEEeecCCHhHHHHHHHHHH
Q 022988 30 GNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVE 109 (289)
Q Consensus 30 G~~~~~~~l~~~Gv~~~~v~~~~~~~~tg~~~i~g~~l~~~~~~~~~~~l~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~ 109 (289)
|.......|+..|+++.++ |..++++++...+.... +++|.+... .......+.++++
T Consensus 15 G~~~~~~~l~~~G~~V~~l---------------g~~~~~~~l~~~~~~~~------pdvV~iS~~-~~~~~~~~~~~i~ 72 (119)
T cd02067 15 GKNIVARALRDAGFEVIDL---------------GVDVPPEEIVEAAKEED------ADAIGLSGL-LTTHMTLMKEVIE 72 (119)
T ss_pred HHHHHHHHHHHCCCEEEEC---------------CCCCCHHHHHHHHHHcC------CCEEEEecc-ccccHHHHHHHHH
Confidence 3333334477788765222 22345555554433222 565544322 2334667788888
Q ss_pred HHHhcCC-CceEEE
Q 022988 110 KLRSINP-NLIYVC 122 (289)
Q Consensus 110 ~~k~~~~-~~~vv~ 122 (289)
.+|+.++ ++++++
T Consensus 73 ~l~~~~~~~~~i~v 86 (119)
T cd02067 73 ELKEAGLDDIPVLV 86 (119)
T ss_pred HHHHcCCCCCeEEE
Confidence 8888755 555554
No 114
>PRK15447 putative protease; Provisional
Probab=37.92 E-value=3e+02 Score=24.71 Aligned_cols=115 Identities=10% Similarity=0.056 Sum_probs=64.8
Q ss_pred CCHHHHHHHHHHHHhCCCcccCEEEEeecC----CHhHHHHHHHHHHHHHhcCCCceEEEcc-ccccCCCccCChhHHHH
Q 022988 67 LNGQQLCDLIEGLEANNLLYYTHLLTGYIG----SVSFLNTILQVVEKLRSINPNLIYVCDP-VMGDEGKLYVPSELVSV 141 (289)
Q Consensus 67 l~~~~~~~~~~~l~~~~~~~~~~v~~G~l~----~~~~~~~~~~~l~~~k~~~~~~~vv~Dp-~~~~~g~~~~~~~~~~~ 141 (289)
.+...++.+...+.+.. +|+|.+|.-. ..-..+.+.++++.++++ |++|.+-. ... ..++..+.
T Consensus 12 ~p~~~~~~~~~~~~~~g---aDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~--gkkvyva~p~i~------~~~~e~~~ 80 (301)
T PRK15447 12 WPKETVRDFYQRAADSP---VDIVYLGETVCSKRRELKVGDWLELAERLAAA--GKEVVLSTLALV------EAPSELKE 80 (301)
T ss_pred CCCCCHHHHHHHHHcCC---CCEEEECCccCCCccCCCHHHHHHHHHHHHHc--CCEEEEEecccc------cCHHHHHH
Confidence 34456666666665433 7889888421 124467788899999988 87877732 211 11122233
Q ss_pred HHHhhcC-Cce-EEcCCHHHHHHhh--CCCCC-CH-H--HHHHHHHHHHhcCCCeEEEee
Q 022988 142 YREKVVP-VAS-MLTPNQFEAEQLT--GFRIG-SE-A--DGREACKILHAAGPAKVVITS 193 (289)
Q Consensus 142 l~~~ll~-~~d-ii~pN~~E~~~L~--g~~~~-~~-~--~~~~a~~~L~~~g~~~Vvvt~ 193 (289)
+.+ ++. ..| |+.-|..++..+- +.++. +. - --..+++.+.++|...|++..
T Consensus 81 l~~-~l~~~~~~v~v~d~g~l~~~~e~~~~l~~d~~lni~N~~a~~~l~~~G~~rv~ls~ 139 (301)
T PRK15447 81 LRR-LVENGEFLVEANDLGAVRLLAERGLPFVAGPALNCYNAATLALLARLGATRWCMPV 139 (301)
T ss_pred HHH-HHhcCCCEEEEeCHHHHHHHHhcCCCEEEecccccCCHHHHHHHHHcCCcEEEECC
Confidence 333 332 344 6677888877666 44431 00 0 012456677778887777764
No 115
>PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function. ; PDB: 1ZTD_A.
Probab=37.78 E-value=41 Score=25.27 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=25.7
Q ss_pred cCCCCCchHHHHHHHHHHHccCC-CCHHHHHHH
Q 022988 206 HQKEKGTGDLMTALLLGWSNKYR-DNLDIAAEL 237 (289)
Q Consensus 206 ~~dt~GAGD~f~g~l~~~l~~~g-~~~~~A~~~ 237 (289)
+.|.+|-||..-|.+++++.+ | .+.+||++.
T Consensus 52 R~dkh~kGd~aEA~iAyAWLe-g~it~eEavei 83 (120)
T PF11469_consen 52 RTDKHGKGDIAEALIAYAWLE-GKITIEEAVEI 83 (120)
T ss_dssp CGGCCGHHHHHHHHHHHHHHT-TSS-HHHHHHH
T ss_pred cccccCccHHHHHHHHHHHHh-ccccHHHHHHH
Confidence 368899999999999999987 6 788888764
No 116
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=37.73 E-value=46 Score=29.21 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeeee
Q 022988 171 EADGREACKILHAAGPAKVVITSIN 195 (289)
Q Consensus 171 ~~~~~~a~~~L~~~g~~~Vvvt~g~ 195 (289)
.++.+++++.+.+.+.+.|++|.|.
T Consensus 115 v~~~~eA~~~l~~~~~~~iflttGs 139 (249)
T PF02571_consen 115 VDSYEEAAELLKELGGGRIFLTTGS 139 (249)
T ss_pred eCCHHHHHHHHhhcCCCCEEEeCch
Confidence 3567777877777776889999886
No 117
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=37.53 E-value=1.5e+02 Score=27.85 Aligned_cols=91 Identities=12% Similarity=0.184 Sum_probs=47.8
Q ss_pred CCCeEEEEeccCccCccchhhcHHHHHhCCCcceeeceEEeecCCCCCCcceeeCCHHHHHHHHHHHHhCCCcccCEEEE
Q 022988 13 ETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLT 92 (289)
Q Consensus 13 ~~~~vl~i~g~~~~G~vG~~~~~~~l~~~Gv~~~~v~~~~~~~~tg~~~i~g~~l~~~~~~~~~~~l~~~~~~~~~~v~~ 92 (289)
+-.+||.+. .|..|.. ..+.++.+|.++..+... .|..++++++++.++.-. .+++|.+
T Consensus 79 pgdkVLv~~----nG~FG~R-~~~ia~~~g~~v~~~~~~-----------wg~~v~p~~v~~~L~~~~-----~~~~V~~ 137 (383)
T COG0075 79 PGDKVLVVV----NGKFGER-FAEIAERYGAEVVVLEVE-----------WGEAVDPEEVEEALDKDP-----DIKAVAV 137 (383)
T ss_pred CCCeEEEEe----CChHHHH-HHHHHHHhCCceEEEeCC-----------CCCCCCHHHHHHHHhcCC-----CccEEEE
Confidence 344555543 3444443 234467777766433321 245678888888766222 1333322
Q ss_pred --eecCCHhHHHHHHHHHHHHHhcCCCceEEEccccc
Q 022988 93 --GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG 127 (289)
Q Consensus 93 --G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~ 127 (289)
...+.+ ...-+.++.+.+|++ +..+|+|.+..
T Consensus 138 vH~ETSTG-vlnpl~~I~~~~k~~--g~l~iVDaVsS 171 (383)
T COG0075 138 VHNETSTG-VLNPLKEIAKAAKEH--GALLIVDAVSS 171 (383)
T ss_pred EeccCccc-ccCcHHHHHHHHHHc--CCEEEEEeccc
Confidence 111111 122344556667777 89999998754
No 118
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=37.30 E-value=17 Score=30.49 Aligned_cols=40 Identities=8% Similarity=0.059 Sum_probs=29.4
Q ss_pred CCCCchHHHHHHHHH-HHccCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 022988 208 KEKGTGDLMTALLLG-WSNKYRDNLDIAAELAVSSLQALLQRTVND 252 (289)
Q Consensus 208 dt~GAGD~f~g~l~~-~l~~~g~~~~~A~~~A~a~a~~~l~~~~~~ 252 (289)
--.|.|-+|.=+|+- .+.. ++++||+++|-..+ +.+..++
T Consensus 145 aIgGSGStfIYGf~D~~~r~-nMt~EE~~~fvk~A----v~lAi~r 185 (224)
T KOG0174|consen 145 AIGGSGSTFIYGFCDANWRP-NMTLEECVRFVKNA----VSLAIER 185 (224)
T ss_pred eeccCCceeeeeeehhhcCC-CCCHHHHHHHHHHH----HHHHHhc
Confidence 346999999988884 5555 99999999876654 4444443
No 119
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=37.22 E-value=1.6e+02 Score=26.72 Aligned_cols=88 Identities=18% Similarity=0.177 Sum_probs=52.6
Q ss_pred eeeCCHHHHHHHHHHHHhCCCcccCEEEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHH
Q 022988 64 GQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYR 143 (289)
Q Consensus 64 g~~l~~~~~~~~~~~l~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~ 143 (289)
|..++++++..++...+....-. +-.+|-=|. ...-.+.++++.+.+ ++|+|++.++- .+++.++.
T Consensus 146 g~~v~~e~La~i~~~~~~~GakN--vN~Vgg~Pt-p~lp~Ile~l~~~~~---~iPvvwNSnmY------~s~E~l~l-- 211 (335)
T COG1313 146 GKEVTPEDLAEIILELRRHGAKN--VNFVGGDPT-PHLPFILEALRYASE---NIPVVWNSNMY------MSEETLKL-- 211 (335)
T ss_pred CeEecHHHHHHHHHHHHHhcCcc--eeecCCCCC-CchHHHHHHHHHHhc---CCCEEEecCCc------cCHHHHHH--
Confidence 45678889988887776543211 222231121 235567778888775 58999999653 44554442
Q ss_pred HhhcCCceEEc-----CCHHHHHHhhCCC
Q 022988 144 EKVVPVASMLT-----PNQFEAEQLTGFR 167 (289)
Q Consensus 144 ~~ll~~~dii~-----pN~~E~~~L~g~~ 167 (289)
+...+||.. .|.+-+..+++.+
T Consensus 212 --L~gvVDiyL~DfKYgNdeca~kySkvp 238 (335)
T COG1313 212 --LDGVVDIYLPDFKYGNDECAEKYSKVP 238 (335)
T ss_pred --hhccceeeecccccCCHHHHHHhhcCC
Confidence 333455554 4666678888764
No 120
>PF12770 CHAT: CHAT domain
Probab=36.75 E-value=1.3e+02 Score=26.20 Aligned_cols=57 Identities=9% Similarity=-0.032 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhcCCCeEEEeeeecCCcEEEecccCCCCCchHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 022988 172 ADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGTGDLMTALLLGWSNKYRDNLDIAAELAVSS 241 (289)
Q Consensus 172 ~~~~~a~~~L~~~g~~~Vvvt~g~~~G~~~~~~~~~dt~GAGD~f~g~l~~~l~~~g~~~~~A~~~A~a~ 241 (289)
+.....++.|+..|++.||.+..+ ++. -+...|+..|-..|.+ |.++.+|++.|...
T Consensus 209 ~~~~~l~~~~l~aG~~~Vi~~~w~-----------V~d-~~a~~f~~~fY~~L~~-g~~~~~Al~~Ar~~ 265 (287)
T PF12770_consen 209 DEVLGLARAFLQAGAPAVIGMLWP-----------VPD-QAAARFMRRFYRALLQ-GQSVAEALRQARRA 265 (287)
T ss_pred hHHHHHHHHHHHcCCCEEEecccC-----------cch-HHHHHHHHHHHHhhhc-CCCHHHHHHHHHHH
Confidence 456667788888898888888765 211 3356788888888898 99999999977765
No 121
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=35.39 E-value=1.9e+02 Score=25.49 Aligned_cols=77 Identities=16% Similarity=0.167 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEc------CCHHHHHHhh--CCCC-----
Q 022988 102 NTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLT------PNQFEAEQLT--GFRI----- 168 (289)
Q Consensus 102 ~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~------pN~~E~~~L~--g~~~----- 168 (289)
+-+..+.+.+++. |++++-+| .+.+.++.+.+ .+|+++ -|..=++.+. |.++
T Consensus 76 ~gl~~l~~~~~~~--Gl~~~t~~---------~d~~~~~~l~~----~~d~lkI~s~~~~n~~LL~~~a~~gkPVilk~G 140 (260)
T TIGR01361 76 EGLKLLRRAADEH--GLPVVTEV---------MDPRDVEIVAE----YADILQIGARNMQNFELLKEVGKQGKPVLLKRG 140 (260)
T ss_pred HHHHHHHHHHHHh--CCCEEEee---------CChhhHHHHHh----hCCEEEECcccccCHHHHHHHhcCCCcEEEeCC
Confidence 3344444445555 88888887 33333443322 245443 3333223332 4432
Q ss_pred -C-CHHHHHHHHHHHHhcCCCeEEEee
Q 022988 169 -G-SEADGREACKILHAAGPAKVVITS 193 (289)
Q Consensus 169 -~-~~~~~~~a~~~L~~~g~~~Vvvt~ 193 (289)
. +.+++..+++.+.+.|.+.++++.
T Consensus 141 ~~~t~~e~~~Ave~i~~~Gn~~i~l~~ 167 (260)
T TIGR01361 141 MGNTIEEWLYAAEYILSSGNGNVILCE 167 (260)
T ss_pred CCCCHHHHHHHHHHHHHcCCCcEEEEE
Confidence 2 678999999999988987777755
No 122
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=35.35 E-value=2.8e+02 Score=24.67 Aligned_cols=89 Identities=18% Similarity=0.154 Sum_probs=51.9
Q ss_pred EEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCC--cc-CChhHHHHHHHhhc--CCceEEcCCHHHHHHhh
Q 022988 90 LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGK--LY-VPSELVSVYREKVV--PVASMLTPNQFEAEQLT 164 (289)
Q Consensus 90 v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~--~~-~~~~~~~~l~~~ll--~~~dii~pN~~E~~~L~ 164 (289)
|..|+-+..+..+.+.++.+.+++. |.|++.=+-|+...- .+ .+++....... +- -.+|||+.|..+-.
T Consensus 118 Vy~Gse~e~~~i~~~~~v~~~a~~~--Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaR-laaelGADIiK~~ytg~~--- 191 (265)
T COG1830 118 VYVGSETEREMIENISQVVEDAHEL--GMPLVAWAYPRGPAIKDEYHRDADLVGYAAR-LAAELGADIIKTKYTGDP--- 191 (265)
T ss_pred EecCCcchHHHHHHHHHHHHHHHHc--CCceEEEEeccCCcccccccccHHHHHHHHH-HHHHhcCCeEeecCCCCh---
Confidence 5567766666777788888899998 999998777763221 01 23333221111 11 17899998765321
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCeEEEeeee
Q 022988 165 GFRIGSEADGREACKILHAAGPAKVVITSIN 195 (289)
Q Consensus 165 g~~~~~~~~~~~a~~~L~~~g~~~Vvvt~g~ 195 (289)
+..+++.+. .+ .-||+.+|+
T Consensus 192 -------e~F~~vv~~---~~-vpVviaGG~ 211 (265)
T COG1830 192 -------ESFRRVVAA---CG-VPVVIAGGP 211 (265)
T ss_pred -------HHHHHHHHh---CC-CCEEEeCCC
Confidence 233322221 23 468888887
No 123
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=35.04 E-value=3.4e+02 Score=25.31 Aligned_cols=109 Identities=21% Similarity=0.285 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhCCCcccCEEEEeecCCHhHHHHHHHHHHHHHhcCCCceE--------EEccccccCCCccCChhH
Q 022988 67 LNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIY--------VCDPVMGDEGKLYVPSEL 138 (289)
Q Consensus 67 l~~~~~~~~~~~l~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~v--------v~Dp~~~~~g~~~~~~~~ 138 (289)
++.++++..++.+.+...+ -+++++|-=|-......+..+++.+++. |.+.+ |+.| .=+.++.
T Consensus 141 ~~~~~~~~al~YIa~hPeI-~eVllSGGDPL~ls~~~L~~ll~~L~~I-pHv~iiRi~TR~pvv~P-------~RIt~~L 211 (369)
T COG1509 141 FNKEEWDKALDYIAAHPEI-REVLLSGGDPLSLSDKKLEWLLKRLRAI-PHVKIIRIGTRLPVVLP-------QRITDEL 211 (369)
T ss_pred CCHHHHHHHHHHHHcCchh-heEEecCCCccccCHHHHHHHHHHHhcC-CceeEEEeecccceech-------hhccHHH
Q ss_pred HHHHHHhhcCCceEEcCCHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC----CeEEEee
Q 022988 139 VSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGP----AKVVITS 193 (289)
Q Consensus 139 ~~~l~~~ll~~~dii~pN~~E~~~L~g~~~~~~~~~~~a~~~L~~~g~----~~Vvvt~ 193 (289)
++.+.+ ....-++..+..-...++ +...+|++.|.+.|. +.|++++
T Consensus 212 ~~~l~~--~~~~v~~~tH~NHp~Eit-------~e~~~A~~~L~~aGv~l~NQsVLLrG 261 (369)
T COG1509 212 CEILGK--SRKPVWLVTHFNHPNEIT-------PEAREACAKLRDAGVPLLNQSVLLRG 261 (369)
T ss_pred HHHHhc--cCceEEEEcccCChhhcC-------HHHHHHHHHHHHcCceeecchheecc
No 124
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=34.71 E-value=2e+02 Score=28.21 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=30.4
Q ss_pred HHHHHhCCCcccCEEEEeecCCHhHHH--------HHH-------HHHHHHHhcCCCceEEEccc
Q 022988 76 IEGLEANNLLYYTHLLTGYIGSVSFLN--------TIL-------QVVEKLRSINPNLIYVCDPV 125 (289)
Q Consensus 76 ~~~l~~~~~~~~~~v~~G~l~~~~~~~--------~~~-------~~l~~~k~~~~~~~vv~Dp~ 125 (289)
.+.+.+..+-.+|.|++..-|-++... .++ .+++.+-+++..+.|++||.
T Consensus 86 ~~~l~~~~i~~IDlVvvNLYPF~~tv~~~~~~~~~~iEnIDIGGpsmlRaAAKN~~~V~Vv~dp~ 150 (513)
T PRK00881 86 VAALEEHGIEPIDLVVVNLYPFEETVAKPGVTLEEAIENIDIGGPTMVRAAAKNHKDVAVVVDPA 150 (513)
T ss_pred HHHHHHcCCCceeEEEEeCcChHHHhccCCCCHHHHHhcccCCcHHHHHHHHhCCCCEEEECCHH
Confidence 344556665568888777655443321 121 24556656567899999994
No 125
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=33.89 E-value=3.3e+02 Score=23.94 Aligned_cols=75 Identities=17% Similarity=0.196 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEE-----cCCHHHHHHhhCCCCCCHHH
Q 022988 99 SFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASML-----TPNQFEAEQLTGFRIGSEAD 173 (289)
Q Consensus 99 ~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii-----~pN~~E~~~L~g~~~~~~~~ 173 (289)
.+.+.+.++++.+|+. |+++++|.+ | +..++..+. +++..|.+ -++.+-...++|.+. +-
T Consensus 96 ~q~e~~~~~~~~ake~--Gl~~~l~Tn----G--~~~~~~~~~----l~~~~D~v~~DlK~~~~~~y~~~tg~~~---~~ 160 (260)
T COG1180 96 LQAEFALDLLRAAKER--GLHVALDTN----G--FLPPEALEE----LLPLLDAVLLDLKAFDDELYRKLTGADN---EP 160 (260)
T ss_pred hhHHHHHHHHHHHHHC--CCcEEEEcC----C--CCCHHHHHH----HHhhcCeEEEeeccCChHHHHHHhCCCc---HH
Confidence 4577889999999998 999999994 3 233444332 44445444 444554888888754 56
Q ss_pred HHHHHHHHHhcCCCe
Q 022988 174 GREACKILHAAGPAK 188 (289)
Q Consensus 174 ~~~a~~~L~~~g~~~ 188 (289)
+.+.++.+.+.|...
T Consensus 161 vl~~~~~l~~~g~~v 175 (260)
T COG1180 161 VLENLELLADLGVHV 175 (260)
T ss_pred HHHHHHHHHcCCCeE
Confidence 667788888777543
No 126
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=33.45 E-value=1.1e+02 Score=29.99 Aligned_cols=81 Identities=15% Similarity=0.183 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhCC----CCCCHHHHHHH
Q 022988 102 NTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGF----RIGSEADGREA 177 (289)
Q Consensus 102 ~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g~----~~~~~~~~~~a 177 (289)
..+..++..+++. |+.+|+-|-.++ .++.+...--...+++..|..|-...... -..-+++.+.+
T Consensus 306 ~~l~~i~aqaqq~--G~~~VVGPLlK~---------nVe~L~~~~q~~i~vLALN~~~n~r~~~~~cyfaLSPEDEa~~A 374 (604)
T COG3107 306 QPLDAILAQAQQD--GADFVVGPLLKP---------NVEALLASNQQPIPVLALNQPENSRNPAQLCYFALSPEDEARDA 374 (604)
T ss_pred ccHHHHHHHHHhc--CCcEEeccccch---------hHHHHHhCcCCCCceeeecCCccccCcccceeeecChhHHHHHH
Confidence 3444556667766 888888883332 22322221112468888898887663321 12235778899
Q ss_pred HHHHHhcCCCeEEEee
Q 022988 178 CKILHAAGPAKVVITS 193 (289)
Q Consensus 178 ~~~L~~~g~~~Vvvt~ 193 (289)
++++...|.++.+|-.
T Consensus 375 A~~l~~qG~R~plvlv 390 (604)
T COG3107 375 ANHLWDQGKRNPLVLV 390 (604)
T ss_pred HHHHHHccccCceEEe
Confidence 9999999987655443
No 127
>cd01938 ADPGK_ADPPFK ADP-dependent glucokinase (ADPGK) and phosphofructokinase (ADPPFK). ADPGK and ADPPFK are proteins that rely on ADP rather than ATP to donate a phosphoryl group. They are found in certain hyperthermophilic archaea and in higher eukaryotes. A functional ADPGK has been characterized in mouse and is assumed to be desirable during ischemia/hypoxia. ADPGK and ADPPFK contain a large and a small domain with the binding site located in a groove between the domains. Partial domain closing is seen when ADP is bound, and further domain closing is observed when glucose is also bound. The oligomerization state apparently varies depending on the species, with some existing as monomers, some as dimers, and some as tetramers.
Probab=32.66 E-value=2.8e+02 Score=26.71 Aligned_cols=31 Identities=32% Similarity=0.295 Sum_probs=25.8
Q ss_pred CChhHHHHHHHhhcCCceEEcCCHHHHHHhh
Q 022988 134 VPSELVSVYREKVVPVASMLTPNQFEAEQLT 164 (289)
Q Consensus 134 ~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~ 164 (289)
.+.+..+.+...++|++|-+=.|+.|+..|+
T Consensus 255 ~d~~l~~~i~~~ilp~VDSlGmNEqEL~~l~ 285 (445)
T cd01938 255 VDEELREEILHEVVPYVDSLGLNEQELANLL 285 (445)
T ss_pred ccHHHHHHHHHHhcccccccccCHHHHHHHH
Confidence 4566677777679999999999999998887
No 128
>PRK00964 tetrahydromethanopterin S-methyltransferase subunit A; Provisional
Probab=32.60 E-value=3.3e+02 Score=23.54 Aligned_cols=89 Identities=18% Similarity=0.184 Sum_probs=51.2
Q ss_pred CCCCeEEEEeccCccCccchhhcHHHHHhCCCcceeeceEEeecCCCCCCcceeeCCHHHHHHHHHHHHhCCCcccCEEE
Q 022988 12 SETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLL 91 (289)
Q Consensus 12 ~~~~~vl~i~g~~~~G~vG~~~~~~~l~~~Gv~~~~v~~~~~~~~tg~~~i~g~~l~~~~~~~~~~~l~~~~~~~~~~v~ 91 (289)
.+.-|.|.+.|...-|+.-.. .+..|.+.||+-. =..+ ..+|...+ -..++.+.++++.+.++ -+| +
T Consensus 69 NpNIRflilcG~Ev~GH~tGq-sl~aL~~NGvd~~-grIi---Ga~GaiPf-leNi~~~aV~rFq~qVe-----ivd--~ 135 (225)
T PRK00964 69 NPNIRFLILCGSEVQGHITGQ-SLKALHENGVDDD-GRII---GAKGAIPF-LENVPDEAVERFQEQIE-----IVD--L 135 (225)
T ss_pred CCCceEEEEecCccCCccccH-HHHHHHHcCCCCC-CCCc---cCCCCCch-hhcCCHHHHHHHHhheE-----EEe--e
Confidence 345567777777776666544 3466778888611 0111 23332111 13577778777766553 122 2
Q ss_pred EeecCCHhHHHHHHHHHHHHHhcCCC
Q 022988 92 TGYIGSVSFLNTILQVVEKLRSINPN 117 (289)
Q Consensus 92 ~G~l~~~~~~~~~~~~l~~~k~~~~~ 117 (289)
+| .+..+.+.+.++.+..+.|+
T Consensus 136 i~----~eD~~~I~a~I~ec~~kdpg 157 (225)
T PRK00964 136 ID----TEDPGAITAKIKECIAKDPG 157 (225)
T ss_pred ec----CCCHHHHHHHHHHHHccCCC
Confidence 22 35677888888998887666
No 129
>KOG4184 consensus Predicted sugar kinase [Carbohydrate transport and metabolism; General function prediction only]
Probab=32.38 E-value=1.7e+02 Score=27.32 Aligned_cols=102 Identities=19% Similarity=0.103 Sum_probs=55.8
Q ss_pred HHHHHHHHhCCCcccC-EEEEeec----CCHhH-HHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhh
Q 022988 73 CDLIEGLEANNLLYYT-HLLTGYI----GSVSF-LNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKV 146 (289)
Q Consensus 73 ~~~~~~l~~~~~~~~~-~v~~G~l----~~~~~-~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~l 146 (289)
+.+.+.+.. +++| +|++|.- ++.+. .+.+.++.+.+-+.-+|+++=+.-.. +.+......+...+
T Consensus 228 E~f~~Al~~---fqPdLvVvsGlhmme~qske~r~~rl~~V~r~L~~iP~gip~HlElaS------~~~~~l~~~i~h~V 298 (478)
T KOG4184|consen 228 EQFTDALKM---FQPDLVVVSGLHMMEMQSKEEREARLQQVVRSLSDIPTGIPVHLELAS------MTNRELMSSIVHQV 298 (478)
T ss_pred HHHHHHHHH---hCCCEEEEechhHHhhhhHHHHHHHHHHHHHHHhcCCCCCchhhhHhH------HHHHHHHHHHHHHh
Confidence 344444443 2467 4677742 22222 22334444444444345555444321 13445555566678
Q ss_pred cCCceEEcCCHHHHHHhhCCC-------------CCCHHHHHHHHHHHHh
Q 022988 147 VPVASMLTPNQFEAEQLTGFR-------------IGSEADGREACKILHA 183 (289)
Q Consensus 147 l~~~dii~pN~~E~~~L~g~~-------------~~~~~~~~~a~~~L~~ 183 (289)
+|++|-+-.|+.|+..|+..- ..+...+.+....|++
T Consensus 299 lPyVdSLGlNEQEL~fL~q~a~gph~~l~~~wng~~~v~~v~~il~wLLk 348 (478)
T KOG4184|consen 299 LPYVDSLGLNEQELLFLTQSASGPHSSLSSDWNGVPDVGMVSDILFWLLK 348 (478)
T ss_pred hhhccccCCCHHHHHHHHHHhcCCCcccccccCCCCcHHHHHHHHHHHHH
Confidence 999999999999999887431 1124455666666664
No 130
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=31.84 E-value=3.3e+02 Score=25.03 Aligned_cols=73 Identities=14% Similarity=0.147 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHH------HHHh--hCCCC----
Q 022988 101 LNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFE------AEQL--TGFRI---- 168 (289)
Q Consensus 101 ~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E------~~~L--~g~~~---- 168 (289)
.+....+.+.+++. |+.++..| ++.+.++.+.+ + .+++++.--.| ++.+ +|.++
T Consensus 75 ~e~~~~L~~~~~~~--Gi~~~stp---------fd~~svd~l~~-~--~v~~~KIaS~~~~n~pLL~~~A~~gkPvilSt 140 (329)
T TIGR03569 75 EEDHRELKEYCESK--GIEFLSTP---------FDLESADFLED-L--GVPRFKIPSGEITNAPLLKKIARFGKPVILST 140 (329)
T ss_pred HHHHHHHHHHHHHh--CCcEEEEe---------CCHHHHHHHHh-c--CCCEEEECcccccCHHHHHHHHhcCCcEEEEC
Confidence 45566777778877 88888888 55555565433 2 24555433322 2222 24432
Q ss_pred --CCHHHHHHHHHHHHhcCCC
Q 022988 169 --GSEADGREACKILHAAGPA 187 (289)
Q Consensus 169 --~~~~~~~~a~~~L~~~g~~ 187 (289)
.+.++++.+++.+.+.|.+
T Consensus 141 Gmatl~Ei~~Av~~i~~~G~~ 161 (329)
T TIGR03569 141 GMATLEEIEAAVGVLRDAGTP 161 (329)
T ss_pred CCCCHHHHHHHHHHHHHcCCC
Confidence 4688999999999888875
No 131
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=31.26 E-value=3.8e+02 Score=23.83 Aligned_cols=77 Identities=16% Similarity=0.159 Sum_probs=45.0
Q ss_pred HHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCH-----HHHHHh---hCCCC-------
Q 022988 104 ILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQ-----FEAEQL---TGFRI------- 168 (289)
Q Consensus 104 ~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~-----~E~~~L---~g~~~------- 168 (289)
=+++++++|+. -|.+|+-|. .+++.++. ..+++|++-.-. +++-.- +|.++
T Consensus 69 GL~~L~~vk~~-~GlpvvTeV---------~~~~~~~~----v~~~~DilQIgArn~rn~~LL~a~g~t~kpV~lKrG~~ 134 (264)
T PRK05198 69 GLKILQEVKET-FGVPVLTDV---------HEPEQAAP----VAEVVDVLQIPAFLCRQTDLLVAAAKTGKVVNIKKGQF 134 (264)
T ss_pred HHHHHHHHHHH-HCCceEEEe---------CCHHHHHH----HHhhCcEEEECchhcchHHHHHHHhccCCeEEecCCCc
Confidence 34556666654 277877776 22232222 344667663222 222221 23332
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEeee
Q 022988 169 GSEADGREACKILHAAGPAKVVITSI 194 (289)
Q Consensus 169 ~~~~~~~~a~~~L~~~g~~~Vvvt~g 194 (289)
.+.++...+++++.+.|.+.|+++-.
T Consensus 135 ~t~~e~~~aaeyi~~~Gn~~vilcER 160 (264)
T PRK05198 135 LAPWDMKNVVDKVREAGNDKIILCER 160 (264)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 36789999999999999998888863
No 132
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=31.10 E-value=4e+02 Score=24.37 Aligned_cols=125 Identities=18% Similarity=0.176 Sum_probs=64.6
Q ss_pred CCCCCCeEEEEeccCccCccch-hhcHHHHHhCCCcceeeceEEeecCCCCCCccee-----------------------
Q 022988 10 LPSETGRVLSIQSHTVQGYVGN-KSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQ----------------------- 65 (289)
Q Consensus 10 ~~~~~~~vl~i~g~~~~G~vG~-~~~~~~l~~~Gv~~~~v~~~~~~~~tg~~~i~g~----------------------- 65 (289)
.......++-|-|....|+.-. +.....|...|..+..+..+..|..||-+ +-|.
T Consensus 46 p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGs-iLGDRiRM~~~~~~~~vFiRs~~srG~ 124 (323)
T COG1703 46 PRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGS-ILGDRIRMQRLAVDPGVFIRSSPSRGT 124 (323)
T ss_pred hcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcc-ccccHhhHHhhccCCCeEEeecCCCcc
Confidence 3344455788877775554432 22445578899877766555433334311 1110
Q ss_pred --eCCHHHHHHHHHHHHhCCCcccCEEEE---eecCCHhHHHHHHHHHHHHHhcCCCce-EEEccccccCCCccCChhHH
Q 022988 66 --VLNGQQLCDLIEGLEANNLLYYTHLLT---GYIGSVSFLNTILQVVEKLRSINPNLI-YVCDPVMGDEGKLYVPSELV 139 (289)
Q Consensus 66 --~l~~~~~~~~~~~l~~~~~~~~~~v~~---G~l~~~~~~~~~~~~l~~~k~~~~~~~-vv~Dp~~~~~g~~~~~~~~~ 139 (289)
-++ ......+..+.... ||.|++ |.-+++. + + .+.+ +.. ++.=|..+ +.+
T Consensus 125 lGGlS-~at~~~i~~ldAaG---~DvIIVETVGvGQsev--~-I---~~~a-----Dt~~~v~~pg~G---------D~~ 180 (323)
T COG1703 125 LGGLS-RATREAIKLLDAAG---YDVIIVETVGVGQSEV--D-I---ANMA-----DTFLVVMIPGAG---------DDL 180 (323)
T ss_pred chhhh-HHHHHHHHHHHhcC---CCEEEEEecCCCcchh--H-H---hhhc-----ceEEEEecCCCC---------cHH
Confidence 122 23333444455443 677665 4334432 1 1 1122 222 33334222 334
Q ss_pred HHHHHhhcCCceEEcCCHHH
Q 022988 140 SVYREKVVPVASMLTPNQFE 159 (289)
Q Consensus 140 ~~l~~~ll~~~dii~pN~~E 159 (289)
+.++..++..+|++..|...
T Consensus 181 Q~iK~GimEiaDi~vINKaD 200 (323)
T COG1703 181 QGIKAGIMEIADIIVINKAD 200 (323)
T ss_pred HHHHhhhhhhhheeeEeccC
Confidence 66777889999999999876
No 133
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=30.73 E-value=4.2e+02 Score=25.28 Aligned_cols=54 Identities=15% Similarity=0.246 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHHhCCCcccCEEEEeecCCHhHHHHHH-HHHHHHHhcCCCceEEE
Q 022988 67 LNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTIL-QVVEKLRSINPNLIYVC 122 (289)
Q Consensus 67 l~~~~~~~~~~~l~~~~~~~~~~v~~G~l~~~~~~~~~~-~~l~~~k~~~~~~~vv~ 122 (289)
.+.+++...++.+.... +.++|++-.++.-..++.+. -+++.+++..+++|+|+
T Consensus 328 a~~~~v~~a~~ii~~d~--~vk~iliNIfGGI~~cd~iA~gii~a~~~~~~~~pivv 382 (422)
T PLN00124 328 ASEQQVVEAFKILTSDD--KVKAILVNIFGGIMKCDVIASGIVNAAKQVGLKVPLVV 382 (422)
T ss_pred CCHHHHHHHHHHHhcCC--CCcEEEEEecCCccchHHHHHHHHHHHHhcCCCCcEEE
Confidence 34566666666555443 24455442222222233332 23444444434455544
No 134
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=30.55 E-value=3.2e+02 Score=22.79 Aligned_cols=72 Identities=14% Similarity=0.206 Sum_probs=38.0
Q ss_pred cchhhcHHHHHhCCCcceeeceEEeecCCCCCCcceeeCCHHHHHHHHHHHHhCCCcccCEEEEeecCCHhHHHHHHHHH
Q 022988 29 VGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVV 108 (289)
Q Consensus 29 vG~~~~~~~l~~~Gv~~~~v~~~~~~~~tg~~~i~g~~l~~~~~~~~~~~l~~~~~~~~~~v~~G~l~~~~~~~~~~~~l 108 (289)
+|.......|+..|+++.++ |..++.+++-+.+.... +|+|.+..+ .......+.+++
T Consensus 99 lG~~~v~~~l~~~G~~vi~L---------------G~~vp~e~~v~~~~~~~------pd~v~lS~~-~~~~~~~~~~~i 156 (197)
T TIGR02370 99 IGKNIVVTMLRANGFDVIDL---------------GRDVPIDTVVEKVKKEK------PLMLTGSAL-MTTTMYGQKDIN 156 (197)
T ss_pred HHHHHHHHHHHhCCcEEEEC---------------CCCCCHHHHHHHHHHcC------CCEEEEccc-cccCHHHHHHHH
Confidence 34433334477788765433 33456666665544333 565544322 223355567788
Q ss_pred HHHHhc--CCCceEEE
Q 022988 109 EKLRSI--NPNLIYVC 122 (289)
Q Consensus 109 ~~~k~~--~~~~~vv~ 122 (289)
+.+++. .+++++++
T Consensus 157 ~~l~~~~~~~~v~i~v 172 (197)
T TIGR02370 157 DKLKEEGYRDSVKFMV 172 (197)
T ss_pred HHHHHcCCCCCCEEEE
Confidence 888876 22345544
No 135
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=30.54 E-value=5e+02 Score=25.02 Aligned_cols=56 Identities=7% Similarity=0.102 Sum_probs=37.4
Q ss_pred eCCHHHHHHHHHHHHhC------CCcccCEEEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEcc
Q 022988 66 VLNGQQLCDLIEGLEAN------NLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDP 124 (289)
Q Consensus 66 ~l~~~~~~~~~~~l~~~------~~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp 124 (289)
.++.+++...++.+... ..+..|.|-+|..+. ..+.+..+++.+++. .++++++|.
T Consensus 101 ~l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~--dp~~v~~~Vk~V~~~-~dvPLSIDT 162 (450)
T PRK04165 101 TMDDEEIDARLKKINNFQFERVGEILKLDMVALRNASG--DPEKFAKAVKKVAET-TDLPLILCS 162 (450)
T ss_pred CCChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCC--CHHHHHHHHHHHHHh-cCCCEEEeC
Confidence 46667887777777321 223478888887654 345667777887763 278999997
No 136
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=30.48 E-value=2.5e+02 Score=25.91 Aligned_cols=39 Identities=8% Similarity=0.175 Sum_probs=28.5
Q ss_pred cCEEEEeecCCHhH----HHHHHHHHHHHHhcCCCceEEEccccc
Q 022988 87 YTHLLTGYIGSVSF----LNTILQVVEKLRSINPNLIYVCDPVMG 127 (289)
Q Consensus 87 ~~~v~~G~l~~~~~----~~~~~~~l~~~k~~~~~~~vv~Dp~~~ 127 (289)
|.-|.++.++.+.. .+...++++.|++. |..+++|.+|.
T Consensus 30 f~~IFtsl~~~~~~~~~~~~~~~ell~~Ankl--g~~vivDvnPs 72 (360)
T COG3589 30 FKRIFTSLLIPEEDAELYFHRFKELLKEANKL--GLRVIVDVNPS 72 (360)
T ss_pred ccceeeecccCCchHHHHHHHHHHHHHHHHhc--CcEEEEEcCHH
Confidence 55667766543322 45667899999998 99999998875
No 137
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=30.35 E-value=66 Score=28.38 Aligned_cols=49 Identities=14% Similarity=0.247 Sum_probs=38.2
Q ss_pred HHHHhhcCCceEEcCCHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCCeEEEee
Q 022988 141 VYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITS 193 (289)
Q Consensus 141 ~l~~~ll~~~dii~pN~~E~~~L~g~~~~~~~~~~~a~~~L~~~g~~~Vvvt~ 193 (289)
.+...|+..+|++..+|. ++|.+..+...+.+..++|.+.|+..++||.
T Consensus 149 ~lARAL~~~p~lllLDEP----~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtH 197 (254)
T COG1121 149 LLARALAQNPDLLLLDEP----FTGVDVAGQKEIYDLLKELRQEGKTVLMVTH 197 (254)
T ss_pred HHHHHhccCCCEEEecCC----cccCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 344557889999998876 7788877778888889999887776666665
No 138
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=30.20 E-value=2.3e+02 Score=27.68 Aligned_cols=50 Identities=8% Similarity=0.088 Sum_probs=31.6
Q ss_pred HHHHHhCCCcccCEEEEeecCCHhHHH--------HHH-------HHHHHHHhcCCCceEEEccc
Q 022988 76 IEGLEANNLLYYTHLLTGYIGSVSFLN--------TIL-------QVVEKLRSINPNLIYVCDPV 125 (289)
Q Consensus 76 ~~~l~~~~~~~~~~v~~G~l~~~~~~~--------~~~-------~~l~~~k~~~~~~~vv~Dp~ 125 (289)
++.+.+..+..+|.|++..-|-++... +++ .+++.+-+++..+.|++||.
T Consensus 81 ~~~l~~~~I~~IDlVvvNLYPF~~tv~~~~~~~~e~IEnIDIGGptmlRaAAKN~~~V~Vv~dp~ 145 (511)
T TIGR00355 81 DADLEEHGIEPIDLVVVNLYPFKETVAKPGVTLAEAVENIDIGGPTMLRAAAKNHADVTILVDPK 145 (511)
T ss_pred HHHHHHcCCCceeEEEEeccChHHHhccCCCCHHHHHHhccCCcHHHHHHHHhCCCCEEEECCHH
Confidence 455666666568888877666544322 222 24555556667899999994
No 139
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=29.96 E-value=3.1e+02 Score=24.70 Aligned_cols=79 Identities=23% Similarity=0.228 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCH---HHHHHh-----hCCCC-----
Q 022988 102 NTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQ---FEAEQL-----TGFRI----- 168 (289)
Q Consensus 102 ~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~---~E~~~L-----~g~~~----- 168 (289)
+.=+++++++|+. -|.+|+=|- .+.+.++. ..+++|++-.-. .-...| +|.++
T Consensus 73 eeGL~iL~~vk~~-~glpvvTeV---------~~~~q~~~----vae~~DilQIgAr~~rqtdLL~a~~~tgkpV~lKkG 138 (290)
T PLN03033 73 AEGLKILEKVKVA-YDLPIVTDV---------HESSQCEA----VGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKG 138 (290)
T ss_pred HHHHHHHHHHHHH-HCCceEEee---------CCHHHHHH----HHhhCcEEeeCcHHHHHHHHHHHHHccCCeEEeCCC
Confidence 3344566666664 278887776 22232332 344567663221 111111 24332
Q ss_pred --CCHHHHHHHHHHHHhcCCCeEEEeee
Q 022988 169 --GSEADGREACKILHAAGPAKVVITSI 194 (289)
Q Consensus 169 --~~~~~~~~a~~~L~~~g~~~Vvvt~g 194 (289)
.+.++...+++++.+.|.+.|+++-.
T Consensus 139 q~~t~~e~~~aaeki~~~GN~~viLcER 166 (290)
T PLN03033 139 QFCAPSVMRNSAEKVRLAGNPNVMVCER 166 (290)
T ss_pred CCCCHHHHHHHHHHHHHcCCCcEEEEeC
Confidence 36789999999999999998888863
No 140
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=29.95 E-value=3.5e+02 Score=23.00 Aligned_cols=99 Identities=11% Similarity=0.084 Sum_probs=52.0
Q ss_pred HHHhCCCcceeeceEEeecCCCCCCcceeeCCHHHHHHHHHHHHhCCCcccCEEEEeecCCHhHHHHHHHHHHHHHhcCC
Q 022988 37 PLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINP 116 (289)
Q Consensus 37 ~l~~~Gv~~~~v~~~~~~~~tg~~~i~g~~l~~~~~~~~~~~l~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~ 116 (289)
.|+..|+++.++ |..++++++........ +++|.+..+ ...+...+.++++.+++..+
T Consensus 111 ~l~~~G~~Vi~L---------------G~~vp~e~~v~~~~~~~------~~~V~lS~~-~~~~~~~~~~~i~~L~~~~~ 168 (213)
T cd02069 111 ILSNNGYEVIDL---------------GVMVPIEKILEAAKEHK------ADIIGLSGL-LVPSLDEMVEVAEEMNRRGI 168 (213)
T ss_pred HHHhCCCEEEEC---------------CCCCCHHHHHHHHHHcC------CCEEEEccc-hhccHHHHHHHHHHHHhcCC
Confidence 477788876433 33456666666544433 555444322 22346667788888887644
Q ss_pred CceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhh
Q 022988 117 NLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLT 164 (289)
Q Consensus 117 ~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~ 164 (289)
+++|++==.+ ++++..+.....-.=.+|....|..|+-.+.
T Consensus 169 ~~~i~vGG~~-------~~~~~~~~~~~~~~~gad~y~~da~~~v~~~ 209 (213)
T cd02069 169 KIPLLIGGAA-------TSRKHTAVKIAPEYDGPVVYVKDASRALGVA 209 (213)
T ss_pred CCeEEEEChh-------cCHHHHhhhhccccCCCceEecCHHHHHHHH
Confidence 5555443211 2333222110000116788888887776553
No 141
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=29.16 E-value=1e+02 Score=19.48 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=21.5
Q ss_pred CCHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCCeEE
Q 022988 155 PNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVV 190 (289)
Q Consensus 155 pN~~E~~~L~g~~~~~~~~~~~a~~~L~~~g~~~Vv 190 (289)
.+.+|+..|+|.+- ....++.|.+.|...++
T Consensus 3 LT~~El~elTG~k~-----~~~Q~~~L~~~Gi~~~~ 33 (47)
T PF13986_consen 3 LTDEELQELTGYKR-----PSKQIRWLRRNGIPFVV 33 (47)
T ss_pred CCHHHHHHHHCCCC-----HHHHHHHHHHCCCeeEE
Confidence 46789999999752 33456778788865544
No 142
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=28.74 E-value=26 Score=33.49 Aligned_cols=22 Identities=14% Similarity=0.356 Sum_probs=17.3
Q ss_pred cccCCCCCchHHHHH-HHHHHHc
Q 022988 204 GSHQKEKGTGDLMTA-LLLGWSN 225 (289)
Q Consensus 204 ~~~~dt~GAGD~f~g-~l~~~l~ 225 (289)
..|+.|+|-||+|+| +|++.++
T Consensus 419 ~~P~sTVGLGDtissgaF~~~~~ 441 (446)
T TIGR02045 419 ENPKSTVGLGDTISTGAFVSYLA 441 (446)
T ss_pred CCCcceeccCcccchhHHHHHHH
Confidence 346889999999985 6777765
No 143
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=28.52 E-value=2.4e+02 Score=22.43 Aligned_cols=58 Identities=16% Similarity=0.109 Sum_probs=33.3
Q ss_pred eeeCCHHHHHHHHHHHHhCCCcccC-EEEEeecC-CHhHHHHHHHHHHHHHhcCCCceEEEcc
Q 022988 64 GQVLNGQQLCDLIEGLEANNLLYYT-HLLTGYIG-SVSFLNTILQVVEKLRSINPNLIYVCDP 124 (289)
Q Consensus 64 g~~l~~~~~~~~~~~l~~~~~~~~~-~v~~G~l~-~~~~~~~~~~~l~~~k~~~~~~~vv~Dp 124 (289)
|..++.++++++++.+..... .. +.++|==| .....+.+.++++.+|+.. +...+++.
T Consensus 43 g~~~~~~~~~~i~~~l~~~~~--~~gVt~sGGEPllq~~~~~l~~ll~~~k~~~-~~~~~~~~ 102 (154)
T TIGR02491 43 GKEFTEALEKEIIRDLNDNPL--IDGLTLSGGDPLYPRNVEELIELVKKIKAEF-PEKDIWLW 102 (154)
T ss_pred CCcCCHHHHHHHHHHHHhcCC--cCeEEEeChhhCCCCCHHHHHHHHHHHHHhC-CCCCEEEe
Confidence 456787888888887775531 22 34455100 0012367888899988752 34445554
No 144
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=28.48 E-value=1.9e+02 Score=24.83 Aligned_cols=98 Identities=19% Similarity=0.137 Sum_probs=54.7
Q ss_pred cCEEEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCH---------
Q 022988 87 YTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQ--------- 157 (289)
Q Consensus 87 ~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~--------- 157 (289)
.|.+=.|. +.....=.+.++.+|+.+|+.++|.|.--.+.|... . +..+-..+|++|..-
T Consensus 29 ~diiEvGT---pLik~eG~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e-------~-~ma~~aGAd~~tV~g~A~~~TI~~ 97 (217)
T COG0269 29 VDIIEVGT---PLIKAEGMRAVRALRELFPDKIIVADLKTADAGAIE-------A-RMAFEAGADWVTVLGAADDATIKK 97 (217)
T ss_pred ceEEEeCc---HHHHHhhHHHHHHHHHHCCCCeEEeeeeecchhHHH-------H-HHHHHcCCCEEEEEecCCHHHHHH
Confidence 45565553 322333346777888888999999998655544321 1 011233666665421
Q ss_pred --HHHHHhhCC---CCCCHHHHHHHHHHHHhcCCCeEEEeeee
Q 022988 158 --FEAEQLTGF---RIGSEADGREACKILHAAGPAKVVITSIN 195 (289)
Q Consensus 158 --~E~~~L~g~---~~~~~~~~~~a~~~L~~~g~~~Vvvt~g~ 195 (289)
.|+...-+. +.-+..+..+.+++|.+.|+..+++..|-
T Consensus 98 ~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H~g~ 140 (217)
T COG0269 98 AIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVILHRGR 140 (217)
T ss_pred HHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEEEecc
Confidence 223322211 11223456667777777888888888774
No 145
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=28.43 E-value=2.3e+02 Score=26.38 Aligned_cols=78 Identities=9% Similarity=0.077 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEc------CCHHHHHHhh--CCCC----
Q 022988 101 LNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLT------PNQFEAEQLT--GFRI---- 168 (289)
Q Consensus 101 ~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~------pN~~E~~~L~--g~~~---- 168 (289)
.+.+..+.+.+++. |++++-+| .+...++.+.+ .+|+++ -|..=+..+. |.++
T Consensus 168 ~e~l~~L~~~~~~~--Gl~~~t~v---------~d~~~~~~l~~----~vd~lkI~s~~~~n~~LL~~~a~~gkPVilk~ 232 (360)
T PRK12595 168 VEGLKILKQVADEY--GLAVISEI---------VNPADVEVALD----YVDVIQIGARNMQNFELLKAAGRVNKPVLLKR 232 (360)
T ss_pred HHHHHHHHHHHHHc--CCCEEEee---------CCHHHHHHHHH----hCCeEEECcccccCHHHHHHHHccCCcEEEeC
Confidence 34455555556666 88888887 33344443332 245443 3332223332 3332
Q ss_pred ---CCHHHHHHHHHHHHhcCCCeEEEee
Q 022988 169 ---GSEADGREACKILHAAGPAKVVITS 193 (289)
Q Consensus 169 ---~~~~~~~~a~~~L~~~g~~~Vvvt~ 193 (289)
.+.+++..+++.+.+.|.+.++++.
T Consensus 233 G~~~t~~e~~~Ave~i~~~Gn~~i~L~e 260 (360)
T PRK12595 233 GLSATIEEFIYAAEYIMSQGNGQIILCE 260 (360)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCEEEEC
Confidence 3678999999999998987787775
No 146
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=28.42 E-value=4.9e+02 Score=24.20 Aligned_cols=78 Identities=13% Similarity=0.155 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHH------HHHhh--CCCC------
Q 022988 103 TILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFE------AEQLT--GFRI------ 168 (289)
Q Consensus 103 ~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E------~~~L~--g~~~------ 168 (289)
.-.++++++++. -|.+++-+| .+.+.++.+. +++|++..-..+ ++.+. |.++
T Consensus 152 ~gl~~L~~~~~e-~Gl~~~tev---------~d~~~v~~~~----~~~d~lqIga~~~~n~~LL~~va~t~kPVllk~G~ 217 (352)
T PRK13396 152 SALELLAAAREA-TGLGIITEV---------MDAADLEKIA----EVADVIQVGARNMQNFSLLKKVGAQDKPVLLKRGM 217 (352)
T ss_pred HHHHHHHHHHHH-cCCcEEEee---------CCHHHHHHHH----hhCCeEEECcccccCHHHHHHHHccCCeEEEeCCC
Confidence 334555555543 288888887 3444444333 346666433222 22222 3332
Q ss_pred -CCHHHHHHHHHHHHhcCCCeEEEeee
Q 022988 169 -GSEADGREACKILHAAGPAKVVITSI 194 (289)
Q Consensus 169 -~~~~~~~~a~~~L~~~g~~~Vvvt~g 194 (289)
.+.+++..+++.+.+.|.+.|++.-.
T Consensus 218 ~~t~ee~~~A~e~i~~~Gn~~viL~er 244 (352)
T PRK13396 218 AATIDEWLMAAEYILAAGNPNVILCER 244 (352)
T ss_pred CCCHHHHHHHHHHHHHcCCCeEEEEec
Confidence 26789999999999989877777653
No 147
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=27.98 E-value=4.5e+02 Score=26.19 Aligned_cols=116 Identities=12% Similarity=0.078 Sum_probs=61.4
Q ss_pred cCccchhhcHHHHHhCCCcceeeceEEe--e--cCCCCCCcceeeCCHHHHHHHHHHHHhCCCcccCEEEEeecCCHhHH
Q 022988 26 QGYVGNKSAVFPLQLLGYDVDPIHSVQF--S--NHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFL 101 (289)
Q Consensus 26 ~G~vG~~~~~~~l~~~Gv~~~~v~~~~~--~--~~tg~~~i~g~~l~~~~~~~~~~~l~~~~~~~~~~v~~G~l~~~~~~ 101 (289)
+|.+|.. ..+.|++.|+++..+..... + ..-|+..+.|+..+++-++ +...-+++++++- .++.
T Consensus 408 ~Gr~G~~-va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~-------~agi~~A~~vv~~-~~d~--- 475 (601)
T PRK03659 408 FGRFGQV-IGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLR-------AAGAEKAEAIVIT-CNEP--- 475 (601)
T ss_pred CchHHHH-HHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHH-------hcCCccCCEEEEE-eCCH---
Confidence 4566653 44668899998765543210 0 1224444456555543332 3333246655443 3332
Q ss_pred HHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhC
Q 022988 102 NTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTG 165 (289)
Q Consensus 102 ~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g 165 (289)
+....++..+|+.+|+.+++.=. .+++..+.+++ ..+|.+.|...|...-.+
T Consensus 476 ~~n~~i~~~~r~~~p~~~IiaRa---------~~~~~~~~L~~---~Ga~~vv~e~~es~l~l~ 527 (601)
T PRK03659 476 EDTMKIVELCQQHFPHLHILARA---------RGRVEAHELLQ---AGVTQFSRETFSSALELG 527 (601)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEe---------CCHHHHHHHHh---CCCCEEEccHHHHHHHHH
Confidence 33444556677777888877644 12222232222 378999888888655444
No 148
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=27.23 E-value=97 Score=20.06 Aligned_cols=34 Identities=26% Similarity=0.264 Sum_probs=25.6
Q ss_pred EEEEeccCccCccchhh-cHHHHHhCCCcceeece
Q 022988 17 VLSIQSHTVQGYVGNKS-AVFPLQLLGYDVDPIHS 50 (289)
Q Consensus 17 vl~i~g~~~~G~vG~~~-~~~~l~~~Gv~~~~v~~ 50 (289)
++.+.+....|..|..+ ....|.+.|+++..+++
T Consensus 2 ~i~i~~~~m~~~~~~~~~if~~l~~~~i~v~~i~t 36 (62)
T cd04890 2 AIEIFDQLMNGEVGFLRKIFEILEKHGISVDLIPT 36 (62)
T ss_pred EEEEeccccCcccCHHHHHHHHHHHcCCeEEEEec
Confidence 46777887778888666 44568999999988864
No 149
>smart00642 Aamy Alpha-amylase domain.
Probab=27.10 E-value=67 Score=26.16 Aligned_cols=25 Identities=12% Similarity=0.278 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhcCCCceEEEccccc
Q 022988 101 LNTILQVVEKLRSINPNLIYVCDPVMG 127 (289)
Q Consensus 101 ~~~~~~~l~~~k~~~~~~~vv~Dp~~~ 127 (289)
.+.+.++++.+|++ |+.|++|-++-
T Consensus 69 ~~d~~~lv~~~h~~--Gi~vilD~V~N 93 (166)
T smart00642 69 MEDFKELVDAAHAR--GIKVILDVVIN 93 (166)
T ss_pred HHHHHHHHHHHHHC--CCEEEEEECCC
Confidence 46678889999998 99999999875
No 150
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=26.67 E-value=1e+02 Score=26.11 Aligned_cols=56 Identities=7% Similarity=0.027 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHhCCCcccCEEEEeecCC--HhHHHHHHHHHHHHHhcCCCceEEEcccc
Q 022988 67 LNGQQLCDLIEGLEANNLLYYTHLLTGYIGS--VSFLNTILQVVEKLRSINPNLIYVCDPVM 126 (289)
Q Consensus 67 l~~~~~~~~~~~l~~~~~~~~~~v~~G~l~~--~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~ 126 (289)
.++++++.+.+++........|.+..|.|.. ....+.+.++++.++ +.+++|.=.+
T Consensus 66 Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~----~~~~tFHRAf 123 (201)
T PF03932_consen 66 YSDEEIEIMKEDIRMLRELGADGFVFGALTEDGEIDEEALEELIEAAG----GMPVTFHRAF 123 (201)
T ss_dssp --HHHHHHHHHHHHHHHHTT-SEEEE--BETTSSB-HHHHHHHHHHHT----TSEEEE-GGG
T ss_pred CCHHHHHHHHHHHHHHHHcCCCeeEEEeECCCCCcCHHHHHHHHHhcC----CCeEEEeCcH
Confidence 4667888877777654333478899998853 345667888888876 6788886543
No 151
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=26.54 E-value=2.9e+02 Score=20.94 Aligned_cols=57 Identities=14% Similarity=0.117 Sum_probs=29.5
Q ss_pred HHHHhCCCcceeeceEEeecCCCCCCcceeeCCHHHHHHHHHHHHhCCCcccCEEEEeecCCHhHHHHHHHHHHHHHhc
Q 022988 36 FPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSI 114 (289)
Q Consensus 36 ~~l~~~Gv~~~~v~~~~~~~~tg~~~i~g~~l~~~~~~~~~~~l~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~ 114 (289)
.-|+..|+++.++. ..++.+++.+...... +++|.+... .....+.+.++++.+++.
T Consensus 21 ~~l~~~G~~vi~lG---------------~~vp~e~~~~~a~~~~------~d~V~iS~~-~~~~~~~~~~~~~~L~~~ 77 (122)
T cd02071 21 RALRDAGFEVIYTG---------------LRQTPEEIVEAAIQED------VDVIGLSSL-SGGHMTLFPEVIELLREL 77 (122)
T ss_pred HHHHHCCCEEEECC---------------CCCCHHHHHHHHHHcC------CCEEEEccc-chhhHHHHHHHHHHHHhc
Confidence 34677777654332 2344455444333222 455444322 234556667777777776
No 152
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=26.43 E-value=1.3e+02 Score=20.78 Aligned_cols=31 Identities=19% Similarity=0.103 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeeeecCC
Q 022988 168 IGSEADGREACKILHAAGPAKVVITSINIDG 198 (289)
Q Consensus 168 ~~~~~~~~~a~~~L~~~g~~~Vvvt~g~~~G 198 (289)
..+.+-+..++.++++..+..++|++|..+|
T Consensus 14 ~~D~~~i~~~Ld~~~~~~~~~~lvhGga~~G 44 (71)
T PF10686_consen 14 WTDHELIWAALDKVHARHPDMVLVHGGAPKG 44 (71)
T ss_pred cccHHHHHHHHHHHHHhCCCEEEEECCCCCC
Confidence 3444556666667776667778888875244
No 153
>TIGR00444 mazG MazG family protein. This family of prokaryotic proteins has no known function. It includes the uncharacterized protein MazG in E. coli.
Probab=26.37 E-value=2.2e+02 Score=24.96 Aligned_cols=47 Identities=17% Similarity=0.172 Sum_probs=34.9
Q ss_pred CchHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 022988 211 GTGDLMTALLLGWSNKYRDNLDIAAELAVSSLQALLQRTVNDYVTAGF 258 (289)
Q Consensus 211 GAGD~f~g~l~~~l~~~g~~~~~A~~~A~a~a~~~l~~~~~~~~~~~~ 258 (289)
-.||.+.+.+..+... |.++++|++.++.-...-.++..+.....|.
T Consensus 184 ElGDlLFalvnlAr~~-giDpE~ALr~a~~KF~~Rf~~~E~~~~~~g~ 230 (248)
T TIGR00444 184 EMGDLLFATVNLARHL-KTDAEIALQKANEKFERRFREVERIVAARGL 230 (248)
T ss_pred HHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4699999988888776 9999999999998766656555544334453
No 154
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=25.39 E-value=5.2e+02 Score=23.51 Aligned_cols=78 Identities=10% Similarity=0.089 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcC--CceEEcCCHHHHHHhhCC-CCCCHHHHHHHH
Q 022988 102 NTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVP--VASMLTPNQFEAEQLTGF-RIGSEADGREAC 178 (289)
Q Consensus 102 ~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~--~~dii~pN~~E~~~L~g~-~~~~~~~~~~a~ 178 (289)
..+.++++.++++ |+.+.++. +|.+ ++.++.+.. ... ..++=-+|.+....+.+. ...+.+.+.+.+
T Consensus 145 p~l~eli~~~k~~--Gi~~~L~T----NG~~---~e~l~~L~~-~~d~i~VSLda~~~e~~~~i~~~~~~~~~~~vl~~L 214 (322)
T PRK13762 145 PYLPELIEEFHKR--GFTTFLVT----NGTR---PDVLEKLEE-EPTQLYVSLDAPDEETYKKINRPVIPDAWERILETL 214 (322)
T ss_pred hhHHHHHHHHHHc--CCCEEEEC----CCCC---HHHHHHHHh-cCCEEEEEccCCCHHHHHHHhCCCCCCcHHHHHHHH
Confidence 3577899999988 88888888 5532 344443311 111 233445667777778763 223567788888
Q ss_pred HHHHhcCCCeE
Q 022988 179 KILHAAGPAKV 189 (289)
Q Consensus 179 ~~L~~~g~~~V 189 (289)
+.|.+.|.+.+
T Consensus 215 ~~l~~~~~~~~ 225 (322)
T PRK13762 215 ELLPSKKTRTV 225 (322)
T ss_pred HHHHhCCCCEE
Confidence 88887776543
No 155
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=25.24 E-value=4.8e+02 Score=23.09 Aligned_cols=78 Identities=13% Similarity=0.114 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCH-----HHHHHhh---CCCC------
Q 022988 103 TILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQ-----FEAEQLT---GFRI------ 168 (289)
Q Consensus 103 ~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~-----~E~~~L~---g~~~------ 168 (289)
.=+++++++|+. -|.+|+-|. .+++.++. ..+++|++-.-. +|+-.-. |.++
T Consensus 60 eGL~iL~~vk~~-~glpvvTeV---------~~~~~~~~----vae~vDilQIgArn~rn~~LL~a~g~t~kpV~lKrG~ 125 (258)
T TIGR01362 60 EGLKILQKVKEE-FGVPILTDV---------HESSQCEP----VAEVVDIIQIPAFLCRQTDLLVAAAKTGRIVNVKKGQ 125 (258)
T ss_pred HHHHHHHHHHHH-hCCceEEEe---------CCHHHHHH----HHhhCcEEEeCchhcchHHHHHHHhccCCeEEecCCC
Confidence 334566666654 278887776 22222221 344677663222 2322222 3322
Q ss_pred -CCHHHHHHHHHHHHhcCCCeEEEeee
Q 022988 169 -GSEADGREACKILHAAGPAKVVITSI 194 (289)
Q Consensus 169 -~~~~~~~~a~~~L~~~g~~~Vvvt~g 194 (289)
.+.++...+++++.+.|.++|+++-.
T Consensus 126 ~~t~~e~l~aaeyi~~~Gn~~viLcER 152 (258)
T TIGR01362 126 FLSPWDMKNVVEKVLSTGNKNILLCER 152 (258)
T ss_pred cCCHHHHHHHHHHHHHcCCCcEEEEeC
Confidence 35788889999999999998888863
No 156
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=25.10 E-value=1.5e+02 Score=26.09 Aligned_cols=55 Identities=11% Similarity=0.175 Sum_probs=38.2
Q ss_pred eCCHHHHHHHHHHHHhCCCcccCEEEEeecCCH--hHHHHHHHHHHHHHhcCCCceEEEcc
Q 022988 66 VLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSV--SFLNTILQVVEKLRSINPNLIYVCDP 124 (289)
Q Consensus 66 ~l~~~~~~~~~~~l~~~~~~~~~~v~~G~l~~~--~~~~~~~~~l~~~k~~~~~~~vv~Dp 124 (289)
..++++++.+.+++....-+.+|.+..|.|.+. ...+.+.++++.++ +.++.|.=
T Consensus 66 ~Ys~~E~~~M~~di~~~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~a~----~~~vTFHR 122 (248)
T PRK11572 66 CYSDGEFAAMLEDIATVRELGFPGLVTGVLDVDGHVDMPRMRKIMAAAG----PLAVTFHR 122 (248)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHhc----CCceEEec
Confidence 346678888877776554445789999988643 44667788888775 56776654
No 157
>PRK03673 hypothetical protein; Provisional
Probab=25.10 E-value=1.7e+02 Score=27.58 Aligned_cols=35 Identities=14% Similarity=0.164 Sum_probs=19.9
Q ss_pred EEEEeccCccCccchhh--cHH-HHHhCCCcceeeceE
Q 022988 17 VLSIQSHTVQGYVGNKS--AVF-PLQLLGYDVDPIHSV 51 (289)
Q Consensus 17 vl~i~g~~~~G~vG~~~--~~~-~l~~~Gv~~~~v~~~ 51 (289)
|+++++--..|.+=+.. .+. .|+..|+++....++
T Consensus 6 Iis~GdEll~G~i~dtN~~~la~~L~~~G~~v~~~~~v 43 (396)
T PRK03673 6 MLSTGDEVLHGQIVDTNAAWLADFFFHQGLPLSRRNTV 43 (396)
T ss_pred EEEecccCCCCeEEEhHHHHHHHHHHHCCCEEEEEEEc
Confidence 44444444456654332 333 488999987655544
No 158
>PRK03979 ADP-specific phosphofructokinase; Provisional
Probab=24.90 E-value=34 Score=32.95 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=16.5
Q ss_pred cccCCCCCchHHHHHH-HHHHHc
Q 022988 204 GSHQKEKGTGDLMTAL-LLGWSN 225 (289)
Q Consensus 204 ~~~~dt~GAGD~f~g~-l~~~l~ 225 (289)
..|+.|+|-||+|+|+ |++.++
T Consensus 433 ~~P~sTVGLGDtisagaF~~~~~ 455 (463)
T PRK03979 433 ENPKSTVGLGDTISAGAFVSYLS 455 (463)
T ss_pred CCCcceeccCcccchhHHHHHHH
Confidence 3468899999999864 666554
No 159
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=24.71 E-value=2.8e+02 Score=22.76 Aligned_cols=42 Identities=10% Similarity=0.119 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHHHhCCCcccCEEEEeecCCHhHHHHHHHHHHHHHhc
Q 022988 68 NGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSI 114 (289)
Q Consensus 68 ~~~~~~~~~~~l~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~ 114 (289)
+++.++++.+++.++ |+|+..++..++..+.+...++..+++
T Consensus 44 ~~~~~~~~~~aia~A-----Dii~~smlF~ed~v~~l~~~L~~~r~~ 85 (164)
T PF11965_consen 44 DPEALEECEAAIARA-----DIIFGSMLFIEDHVRPLLPALEARRDH 85 (164)
T ss_pred ChHHHHHHHHHHHhC-----CEEEeehhhhHHHHHHHHHHHHHHHcc
Confidence 355667777788854 455666677888888888888877654
No 160
>TIGR01358 DAHP_synth_II 3-deoxy-7-phosphoheptulonate synthase, class II. Homologs scoring between trusted and noise cutoff include proteins involved in antibiotic biosynthesis; one example is active as this enzyme, while another acts on an amino analog.
Probab=24.56 E-value=2.8e+02 Score=26.54 Aligned_cols=61 Identities=21% Similarity=0.421 Sum_probs=39.2
Q ss_pred eeeCCHHHHHHHHHHHHhCCCcccCEEEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccc
Q 022988 64 GQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPV 125 (289)
Q Consensus 64 g~~l~~~~~~~~~~~l~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~ 125 (289)
|+..+++++-++++.+.-.+. .-...++.-++...-.+.+-.+++..++..-.+.+++||.
T Consensus 287 GP~~~p~~l~~L~~~LnP~~e-pGRlTLI~RmGa~kV~~~LP~li~aV~~~G~~VvW~cDPM 347 (443)
T TIGR01358 287 GPSMTPDELLRLIERLNPENE-PGRLTLISRMGADKIADKLPPLLRAVKAAGRRVVWVCDPM 347 (443)
T ss_pred CCCCCHHHHHHHHHHhCCCCC-CceEEEEeccCchHHHHhHHHHHHHHHHcCCceEEeecCC
Confidence 456788898888888865442 1234454445555556677778888887632455677884
No 161
>TIGR01111 mtrA N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit A. coenzyme M methyltransferase subunit A in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.
Probab=24.33 E-value=4.7e+02 Score=22.66 Aligned_cols=89 Identities=21% Similarity=0.228 Sum_probs=48.7
Q ss_pred CCCCeEEEEeccCccCccchhhcHHHHHhCCCcceeeceEEeecCCCCCCcceeeCCHHHHHHHHHHHHhCCCcccCEEE
Q 022988 12 SETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLL 91 (289)
Q Consensus 12 ~~~~~vl~i~g~~~~G~vG~~~~~~~l~~~Gv~~~~v~~~~~~~~tg~~~i~g~~l~~~~~~~~~~~l~~~~~~~~~~v~ 91 (289)
.+.-|.+.+.|...-|+.-.+ .+..|.+.|++-. =. +. ..+|...+ -..++.+.++++.+.++ -+| +
T Consensus 69 NpNIRflilcG~Ev~GHltGq-sL~aLh~NGi~e~-gr-Ii--Ga~GaiPf-leNi~~~aVerFq~qVe-----iVd--l 135 (238)
T TIGR01111 69 NPNIRFLILCGSEVQGHITGQ-SFKALHENGVDDD-GR-II--GALGAIPY-LENINEEAVERFQEQIE-----VVN--L 135 (238)
T ss_pred CCCceEEEEecCcccCccccH-HHHHHHHcCCCCC-Cc-Ee--cCCCCCch-hhcCCHHHHHHHHhheE-----EEe--e
Confidence 344556777777666666444 2456777777511 01 11 23332111 13567777777655543 122 2
Q ss_pred EeecCCHhHHHHHHHHHHHHHhcCCC
Q 022988 92 TGYIGSVSFLNTILQVVEKLRSINPN 117 (289)
Q Consensus 92 ~G~l~~~~~~~~~~~~l~~~k~~~~~ 117 (289)
+| .+..+.+.+.++.+.+++||
T Consensus 136 I~----~eD~~~I~~~I~ec~~kdpG 157 (238)
T TIGR01111 136 ID----VEDMGAITSKVKECASKDPG 157 (238)
T ss_pred ec----CCCHHHHHHHHHHHHhcCCC
Confidence 22 35677888888888777655
No 162
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=24.25 E-value=4.8e+02 Score=22.76 Aligned_cols=123 Identities=14% Similarity=0.158 Sum_probs=69.6
Q ss_pred eCCHHHHHHHHHHHHhCCCcccCEEEEeecC----CHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHH
Q 022988 66 VLNGQQLCDLIEGLEANNLLYYTHLLTGYIG----SVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSV 141 (289)
Q Consensus 66 ~l~~~~~~~~~~~l~~~~~~~~~~v~~G~l~----~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~ 141 (289)
.++++ +..+++.+.+..+ +-+++-+|.++ .++..+...+=++.+++. ++|+|+-. |+.+. .-.....++.
T Consensus 76 ~iP~e-~~~~l~~L~~~l~-~e~VvAiGEiGLe~~t~~E~evf~~QL~LA~e~--dvPviVHT-Pr~nK-~e~t~~ildi 149 (254)
T COG1099 76 AIPPE-LEEVLEELEELLS-NEDVVAIGEIGLEEATDEEKEVFREQLELAREL--DVPVIVHT-PRRNK-KEATSKILDI 149 (254)
T ss_pred CCCch-HHHHHHHHHhhcc-cCCeeEeeecccccCCHHHHHHHHHHHHHHHHc--CCcEEEeC-CCCcc-hhHHHHHHHH
Confidence 35544 7777777776544 34577788765 334455666777889988 99999986 33211 1123333443
Q ss_pred HHHhhcCCceEEc--CCHHHHHHhhCCCC------C-CHHHHHHHHHHHHhcCCCeEEEeee
Q 022988 142 YREKVVPVASMLT--PNQFEAEQLTGFRI------G-SEADGREACKILHAAGPAKVVITSI 194 (289)
Q Consensus 142 l~~~ll~~~dii~--pN~~E~~~L~g~~~------~-~~~~~~~a~~~L~~~g~~~Vvvt~g 194 (289)
+...-++...+++ .|.+-...+.+... . ..-+..++++...++|...+++.+-
T Consensus 150 ~~~~~l~~~lvvIDH~N~etv~~vld~e~~vGlTvqPgKlt~~eAveIV~ey~~~r~ilnSD 211 (254)
T COG1099 150 LIESGLKPSLVVIDHVNEETVDEVLDEEFYVGLTVQPGKLTVEEAVEIVREYGAERIILNSD 211 (254)
T ss_pred HHHcCCChhheehhcccHHHHHHHHhccceEEEEecCCcCCHHHHHHHHHHhCcceEEEecc
Confidence 3332233333332 45555554554331 1 2234567777777888777777663
No 163
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=24.20 E-value=3.4e+02 Score=23.08 Aligned_cols=49 Identities=16% Similarity=0.261 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhCCCcccCEEEEe-ecCCHhHHHHHHHHHHHHHhcCCCceEEEcc
Q 022988 70 QQLCDLIEGLEANNLLYYTHLLTG-YIGSVSFLNTILQVVEKLRSINPNLIYVCDP 124 (289)
Q Consensus 70 ~~~~~~~~~l~~~~~~~~~~v~~G-~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp 124 (289)
+++..+.+.+.+.. .|++++| +. ....+.+.++++.+|+. .++|+++-|
T Consensus 11 e~~~~ia~~v~~~g---tDaI~VGGS~--gvt~~~~~~~v~~ik~~-~~lPvilfp 60 (205)
T TIGR01769 11 DEIEKIAKNAKDAG---TDAIMVGGSL--GIVESNLDQTVKKIKKI-TNLPVILFP 60 (205)
T ss_pred HHHHHHHHHHHhcC---CCEEEEcCcC--CCCHHHHHHHHHHHHhh-cCCCEEEEC
Confidence 34444444555432 6788876 43 23455666677777773 268999877
No 164
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=24.03 E-value=3.9e+02 Score=21.64 Aligned_cols=100 Identities=19% Similarity=0.142 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhCCCcccCEEEEeecCCHhHHHHHHHHHHHHHhcCCCceEEE--ccccccCCCccCChhHHHHHHHhh
Q 022988 69 GQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVC--DPVMGDEGKLYVPSELVSVYREKV 146 (289)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~--Dp~~~~~g~~~~~~~~~~~l~~~l 146 (289)
.+-+..+++...... ..+.++|. ..+.+.++.+.+++.+|++.++- ||-+... ..++.++.+..
T Consensus 32 ~dl~~~ll~~~~~~~---~~v~llG~-----~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~----~~~~i~~~I~~-- 97 (171)
T cd06533 32 SDLMPALLELAAQKG---LRVFLLGA-----KPEVLEKAAERLRARYPGLKIVGYHHGYFGPE----EEEEIIERINA-- 97 (171)
T ss_pred HHHHHHHHHHHHHcC---CeEEEECC-----CHHHHHHHHHHHHHHCCCcEEEEecCCCCChh----hHHHHHHHHHH--
Confidence 345566676666543 23455553 24556666677787789988774 5533221 11222333322
Q ss_pred cCCceEEcCCHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCCeEEEeeee
Q 022988 147 VPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSIN 195 (289)
Q Consensus 147 l~~~dii~pN~~E~~~L~g~~~~~~~~~~~a~~~L~~~g~~~Vvvt~g~ 195 (289)
..+|+|..- .|.+ .-+..+.+..+.....|+++.|.
T Consensus 98 -~~pdiv~vg-------lG~P-----kQE~~~~~~~~~l~~~v~~~vG~ 133 (171)
T cd06533 98 -SGADILFVG-------LGAP-----KQELWIARHKDRLPVPVAIGVGG 133 (171)
T ss_pred -cCCCEEEEE-------CCCC-----HHHHHHHHHHHHCCCCEEEEece
Confidence 367776531 2322 12233444554445677887764
No 165
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=23.96 E-value=4.5e+02 Score=22.28 Aligned_cols=27 Identities=11% Similarity=0.070 Sum_probs=18.6
Q ss_pred HhHHHHHHHHHHHHHhcCCCceEEEcccc
Q 022988 98 VSFLNTILQVVEKLRSINPNLIYVCDPVM 126 (289)
Q Consensus 98 ~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~ 126 (289)
....+.+.++.+.+++. ++++++|...
T Consensus 105 ~~~~~~i~~v~~~~~~~--g~~~iie~~~ 131 (235)
T cd00958 105 REMLEELARVAAEAHKY--GLPLIAWMYP 131 (235)
T ss_pred HHHHHHHHHHHHHHHHc--CCCEEEEEec
Confidence 34455666677777776 8999998744
No 166
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=23.94 E-value=5.1e+02 Score=22.91 Aligned_cols=107 Identities=18% Similarity=0.085 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhCCCcccCEEEEeec-----C---CHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHH
Q 022988 69 GQQLCDLIEGLEANNLLYYTHLLTGYI-----G---SVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVS 140 (289)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~~~~v~~G~l-----~---~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~ 140 (289)
.+++.+..+.+.+.. +.++..|.. | .+...+-+..+.+.+++. |++++-+| .++..++
T Consensus 40 ~~~~~~~A~~lk~~g---~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~--Gl~~~te~---------~d~~~~~ 105 (266)
T PRK13398 40 EEQMVKVAEKLKELG---VHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKY--NLPVVTEV---------MDTRDVE 105 (266)
T ss_pred HHHHHHHHHHHHHcC---CCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHc--CCCEEEee---------CChhhHH
Confidence 456666666777654 334444422 1 111233444444555555 89988887 3333344
Q ss_pred HHHHhhcCCceEEc------CCHHHHHHhh--CCCC-------CCHHHHHHHHHHHHhcCCCeEEEee
Q 022988 141 VYREKVVPVASMLT------PNQFEAEQLT--GFRI-------GSEADGREACKILHAAGPAKVVITS 193 (289)
Q Consensus 141 ~l~~~ll~~~dii~------pN~~E~~~L~--g~~~-------~~~~~~~~a~~~L~~~g~~~Vvvt~ 193 (289)
.+.+ .+|++. -|..=++.+. |.++ .+.+++..+++.+...|.+.+++..
T Consensus 106 ~l~~----~vd~~kIga~~~~n~~LL~~~a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~ 169 (266)
T PRK13398 106 EVAD----YADMLQIGSRNMQNFELLKEVGKTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCE 169 (266)
T ss_pred HHHH----hCCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEE
Confidence 3332 245543 2332233332 3332 2678899999999888987766654
No 167
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=23.76 E-value=87 Score=27.27 Aligned_cols=25 Identities=12% Similarity=0.199 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhcCCCceEEEccccc
Q 022988 101 LNTILQVVEKLRSINPNLIYVCDPVMG 127 (289)
Q Consensus 101 ~~~~~~~l~~~k~~~~~~~vv~Dp~~~ 127 (289)
.+-++++++.++++ |++||+|-++.
T Consensus 51 ~~d~~~Lv~~~h~~--gi~VilD~V~N 75 (316)
T PF00128_consen 51 MEDFKELVDAAHKR--GIKVILDVVPN 75 (316)
T ss_dssp HHHHHHHHHHHHHT--TCEEEEEEETS
T ss_pred hhhhhhhhhccccc--cceEEEeeecc
Confidence 45688899999998 99999998875
No 168
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=23.73 E-value=2.1e+02 Score=24.57 Aligned_cols=52 Identities=25% Similarity=0.204 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhCCCcccCEEEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEcccccc
Q 022988 70 QQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD 128 (289)
Q Consensus 70 ~~~~~~~~~l~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~ 128 (289)
++...+.+.+.. ..+.+++|+ +.-...=.++++.+++.+|+.+|++|--..|
T Consensus 16 ~~A~~l~~~l~~----~v~~iKVG~---~L~~~~G~~~i~~lk~~~~~~~IflDlKl~D 67 (218)
T PRK13305 16 EAAQRDVTLLKD----HVDIVEAGT---ILCLNEGLGAVKALREQCPDKIIVADWKVAD 67 (218)
T ss_pred HHHHHHHHHccc----cCCEEEECH---HHHHHhCHHHHHHHHHhCCCCEEEEEeeccc
Confidence 344444444432 256789985 2222222456677777778899999975443
No 169
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=23.69 E-value=2.3e+02 Score=24.46 Aligned_cols=44 Identities=16% Similarity=0.153 Sum_probs=28.4
Q ss_pred HHHHHHhCCCcccCEEEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEcc
Q 022988 75 LIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDP 124 (289)
Q Consensus 75 ~~~~l~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp 124 (289)
.++.+.+.. .|++++|-- ...+.+.+.++++.+|+. .+|+++-|
T Consensus 19 ~~~~~~~~g---tdai~vGGS-~~vt~~~~~~~v~~ik~~--~lPvilfp 62 (223)
T TIGR01768 19 IAKAAAESG---TDAILIGGS-QGVTYEKTDTLIEALRRY--GLPIILFP 62 (223)
T ss_pred HHHHHHhcC---CCEEEEcCC-CcccHHHHHHHHHHHhcc--CCCEEEeC
Confidence 344444432 678877632 224456677778888876 69999988
No 170
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=23.39 E-value=3.1e+02 Score=23.03 Aligned_cols=46 Identities=11% Similarity=0.123 Sum_probs=26.3
Q ss_pred HHhCCCcccCEEEEeecCCHhHH--------HHHH-------HHHHHHHhcCCCceEEEcc
Q 022988 79 LEANNLLYYTHLLTGYIGSVSFL--------NTIL-------QVVEKLRSINPNLIYVCDP 124 (289)
Q Consensus 79 l~~~~~~~~~~v~~G~l~~~~~~--------~~~~-------~~l~~~k~~~~~~~vv~Dp 124 (289)
+.+..+-.+|.|++..-|-+... +.++ .+++.+.+++..+.|++||
T Consensus 84 ~~~~~i~~idlVvvNlYpF~~~~~~~~~~~~~~iEnIDIGGpsmlRaAAKN~~~V~vv~dp 144 (187)
T cd01421 84 LEEHGIEPIDLVVVNLYPFEETVAKGNVTLEEAIENIDIGGPSLLRAAAKNYKDVTVLVDP 144 (187)
T ss_pred HHHcCCCCeeEEEEcccChHHHhccCCCCHHHHHHhccCCcHHHHHHHHhcCCCeEEEcCH
Confidence 44555545887777655543321 1111 2455555555678888898
No 171
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=23.03 E-value=4.6e+02 Score=22.08 Aligned_cols=131 Identities=19% Similarity=0.177 Sum_probs=65.9
Q ss_pred CCeEEEEeccCccCccchhhcHHHHHhCCCcceeeceEEeecCCC---CCCcce---eeCCHHHHHHHHHHHHhCCCccc
Q 022988 14 TGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTG---YPTFKG---QVLNGQQLCDLIEGLEANNLLYY 87 (289)
Q Consensus 14 ~~~vl~i~g~~~~G~vG~~~~~~~l~~~Gv~~~~v~~~~~~~~tg---~~~i~g---~~l~~~~~~~~~~~l~~~~~~~~ 87 (289)
+|+++++.|-. ++|.+..++.|.+.- +..+-. |.+|- -.+..| .-++.++++..++ ....+..
T Consensus 3 ~G~l~vlsgPS---G~GKsTl~k~L~~~~-~l~~SV----S~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~---~~~fLE~ 71 (191)
T COG0194 3 KGLLIVLSGPS---GVGKSTLVKALLEDD-KLRFSV----SATTRKPRPGEVDGVDYFFVTEEEFEELIE---RDEFLEW 71 (191)
T ss_pred CceEEEEECCC---CCCHHHHHHHHHhhc-CeEEEE----EeccCCCCCCCcCCceeEeCCHHHHHHHHh---cCCcEEE
Confidence 67888888877 566666666643322 322211 12221 112222 3588888887653 2222221
Q ss_pred CEEEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcC---CceEEcCCHHHHHH-h
Q 022988 88 THLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVP---VASMLTPNQFEAEQ-L 163 (289)
Q Consensus 88 ~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~---~~dii~pN~~E~~~-L 163 (289)
.-+.-++-+ .+...+.+.++ . |..+++|.-.- .+ ..+++ .+| ...+.-|+.+|++. |
T Consensus 72 a~~~gnyYG--T~~~~ve~~~~----~--G~~vildId~q---------Ga-~qvk~-~~p~~v~IFi~pPs~eeL~~RL 132 (191)
T COG0194 72 AEYHGNYYG--TSREPVEQALA----E--GKDVILDIDVQ---------GA-LQVKK-KMPNAVSIFILPPSLEELERRL 132 (191)
T ss_pred EEEcCCccc--CcHHHHHHHHh----c--CCeEEEEEehH---------HH-HHHHH-hCCCeEEEEEcCCCHHHHHHHH
Confidence 112212221 22344443332 2 78899997221 11 22333 444 34677899999865 5
Q ss_pred hCCCCCCHHHH
Q 022988 164 TGFRIGSEADG 174 (289)
Q Consensus 164 ~g~~~~~~~~~ 174 (289)
.|+.-.+.+.+
T Consensus 133 ~~Rgtds~e~I 143 (191)
T COG0194 133 KGRGTDSEEVI 143 (191)
T ss_pred HccCCCCHHHH
Confidence 66654444433
No 172
>PLN02291 phospho-2-dehydro-3-deoxyheptonate aldolase
Probab=22.68 E-value=3.1e+02 Score=26.49 Aligned_cols=61 Identities=18% Similarity=0.278 Sum_probs=39.0
Q ss_pred eeeCCHHHHHHHHHHHHhCCCcccCEEEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccc
Q 022988 64 GQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPV 125 (289)
Q Consensus 64 g~~l~~~~~~~~~~~l~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~ 125 (289)
|+..+++++-++++.+.-.+. .-...++.-++.....+.+-.+++..++..-.+.+++||.
T Consensus 307 GPs~~pdel~~L~~~LnP~~e-pGRlTLI~RmGa~kV~~~LP~Li~aV~~~G~~VvW~cDPM 367 (474)
T PLN02291 307 SDKMDPEELVKLIEILNPQNK-PGRLTIIVRMGAEKLRVKLPHLIRAVRRAGQIVTWVSDPM 367 (474)
T ss_pred CCCCCHHHHHHHHHHhCCCCC-CceEEEEeccchHHHHHHHHHHHHHHHHcCCceEEeecCC
Confidence 456788888888888865442 1234455445555556677778888887622355667884
No 173
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=22.59 E-value=5.8e+02 Score=23.55 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHHHHhcCCC-eEEEeee
Q 022988 169 GSEADGREACKILHAAGPA-KVVITSI 194 (289)
Q Consensus 169 ~~~~~~~~a~~~L~~~g~~-~Vvvt~g 194 (289)
.+.++++++++.+.+.|.. .+++.+-
T Consensus 157 a~~~ei~~av~~~r~~g~~~i~LLhC~ 183 (347)
T COG2089 157 ATIEEIEEAVAILRENGNPDIALLHCT 183 (347)
T ss_pred ccHHHHHHHHHHHHhcCCCCeEEEEec
Confidence 4568899999999988876 4555553
No 174
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=22.08 E-value=3.5e+02 Score=20.41 Aligned_cols=47 Identities=17% Similarity=0.151 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHH
Q 022988 103 TILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFE 159 (289)
Q Consensus 103 ~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E 159 (289)
...++++.+|+++|+++|++==.... ..++ .+ ...+.+|++...+.|
T Consensus 54 ~~~~~~~~ik~~~p~~~iv~GG~~~t-----~~p~---~~--~~~~~~D~vv~GEgE 100 (127)
T cd02068 54 EALELAKIAKEVLPNVIVVVGGPHAT-----FFPE---EI--LEEPGVDFVVIGEGE 100 (127)
T ss_pred HHHHHHHHHHHHCCCCEEEECCcchh-----hCHH---HH--hcCCCCCEEEECCcH
Confidence 56778888888877788776421111 1111 11 134578999887766
No 175
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=21.94 E-value=2.7e+02 Score=24.28 Aligned_cols=37 Identities=16% Similarity=0.117 Sum_probs=25.4
Q ss_pred cCEEEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccc
Q 022988 87 YTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPV 125 (289)
Q Consensus 87 ~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~ 125 (289)
.|+|++|-- .....+.+.+.++++|++ .++|+++-|.
T Consensus 42 TDaImIGGS-~gvt~~~~~~~v~~ik~~-~~lPvilfP~ 78 (240)
T COG1646 42 TDAIMIGGS-DGVTEENVDNVVEAIKER-TDLPVILFPG 78 (240)
T ss_pred CCEEEECCc-ccccHHHHHHHHHHHHhh-cCCCEEEecC
Confidence 688888632 223455677777888853 3899999994
No 176
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=21.79 E-value=5.4e+02 Score=22.45 Aligned_cols=25 Identities=20% Similarity=0.114 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeeee
Q 022988 171 EADGREACKILHAAGPAKVVITSIN 195 (289)
Q Consensus 171 ~~~~~~a~~~L~~~g~~~Vvvt~g~ 195 (289)
.++..+.+++.++.|+..|++-...
T Consensus 133 ~~~~i~~~~~~LeAGA~~ViiEarE 157 (237)
T TIGR03849 133 PDDRIKLINKDLEAGADYVIIEGRE 157 (237)
T ss_pred HHHHHHHHHHHHHCCCcEEEEeehh
Confidence 4555566667788999999998743
No 177
>TIGR03282 methan_mark_13 putative methanogenesis marker 13 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This metal cluster-binding family is related to nitrogenase structural protein NifD and accessory protein NifE, among others.
Probab=21.57 E-value=6.4e+02 Score=23.42 Aligned_cols=62 Identities=11% Similarity=0.208 Sum_probs=36.1
Q ss_pred CeEEEEeccCccCccchhhcHHH-HHhCCCcceeeceEEeecCCCCCCc-ce-----------eeCCHHHHHHHHHHHHh
Q 022988 15 GRVLSIQSHTVQGYVGNKSAVFP-LQLLGYDVDPIHSVQFSNHTGYPTF-KG-----------QVLNGQQLCDLIEGLEA 81 (289)
Q Consensus 15 ~~vl~i~g~~~~G~vG~~~~~~~-l~~~Gv~~~~v~~~~~~~~tg~~~i-~g-----------~~l~~~~~~~~~~~l~~ 81 (289)
++++.+.+.+..+-.|.|- .. .++...++ +.+.+..+.|+... .| ..++.++++++...+..
T Consensus 76 P~lI~VvTTCvseIIGDDI--eaVvkE~~~gi---PVI~V~t~GGfGdn~~G~~~aLeAiidq~~i~~~e~~rq~~~l~~ 150 (352)
T TIGR03282 76 PELIGVVGTCASMIIGEDL--KEAVDEADVDA---EVIAVEVHAGFGDNTEGVIATLESAAEAGIIDEDEVERQKELLKK 150 (352)
T ss_pred CCEEEEECCCchhhccCCH--HHHHHHhCCCC---CEEEEECCCCCccHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHH
Confidence 5788888999999999874 22 33333222 23333344555332 12 26788888877665543
No 178
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=21.30 E-value=5.1e+02 Score=21.95 Aligned_cols=81 Identities=12% Similarity=0.089 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhCCCcccCEEEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCc
Q 022988 71 QLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVA 150 (289)
Q Consensus 71 ~~~~~~~~l~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~ 150 (289)
-+..+.+.+....+-..++++++-.-.....+...+.++.++++ ....+.++|-+... +.-.++. ...++. .++++
T Consensus 135 aL~~~~~~~~~~~~~~t~vvIiSDg~~~~~~~~~~~~l~~l~~r-~~rviwLnP~~~~~-~~~~~~~-~~~~~~-~~~~v 210 (222)
T PF05762_consen 135 ALREFLRQYARPDLRRTTVVIISDGWDTNDPEPLAEELRRLRRR-GRRVIWLNPLPRAG-WPGYDPV-ARGYRA-ALPYV 210 (222)
T ss_pred HHHHHHHHhhcccccCcEEEEEecccccCChHHHHHHHHHHHHh-CCEEEEECCccccc-CCCCChH-HHHHHH-hCChh
Confidence 34444444442222123455555442222344455666677766 12346668864321 1113344 444554 67777
Q ss_pred eEEcC
Q 022988 151 SMLTP 155 (289)
Q Consensus 151 dii~p 155 (289)
|.+.|
T Consensus 211 ~~~~~ 215 (222)
T PF05762_consen 211 DACRP 215 (222)
T ss_pred hhcCC
Confidence 76655
No 179
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=21.22 E-value=3.7e+02 Score=20.29 Aligned_cols=58 Identities=22% Similarity=0.249 Sum_probs=33.5
Q ss_pred eCCHHHHHHHHHHHHhCCCcccCEEEEeecCCHhHHHHHHHHHHHHHhcCCCceEEEccccc
Q 022988 66 VLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG 127 (289)
Q Consensus 66 ~l~~~~~~~~~~~l~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp~~~ 127 (289)
.++.+.+..++....+.+ .-.|+=|..+. .-.++...+-+..++..+...+.+||..-
T Consensus 7 SMP~~~L~~l~~~a~~~~---~~~V~RG~~~g-~~~~t~~~~~~l~~~~~~~~~v~IdP~~F 64 (113)
T PF09673_consen 7 SMPDASLRNLLKQAERAG---VVVVFRGFPDG-SFKPTAKAIQELLRKDDPCPGVQIDPRLF 64 (113)
T ss_pred CCCHHHHHHHHHHHHhCC---cEEEEECCCCC-CHHHHHHHHHHHhhccCCCcceeEChhHH
Confidence 466778888877777653 33567787655 33344444444444331124789999543
No 180
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=20.26 E-value=5e+02 Score=22.37 Aligned_cols=83 Identities=20% Similarity=0.117 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhCCCCCCHHHHHHHHH
Q 022988 100 FLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACK 179 (289)
Q Consensus 100 ~~~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g~~~~~~~~~~~a~~ 179 (289)
+.+++.++++.+++. ++.+.+|-.-. |...+..+.+.+ -.+|++..+..==.+..|.... . +..+..+
T Consensus 91 ~~~TI~~~i~~A~~~--~~~v~iDl~~~-----~~~~~~~~~l~~---~gvd~~~~H~g~D~q~~G~~~~-~-~~l~~ik 158 (217)
T COG0269 91 DDATIKKAIKVAKEY--GKEVQIDLIGV-----WDPEQRAKWLKE---LGVDQVILHRGRDAQAAGKSWG-E-DDLEKIK 158 (217)
T ss_pred CHHHHHHHHHHHHHc--CCeEEEEeecC-----CCHHHHHHHHHH---hCCCEEEEEecccHhhcCCCcc-H-HHHHHHH
Confidence 467888899999998 88999997321 111222222221 3678887777655555787531 2 3334466
Q ss_pred HHHhcCCCeEEEeeee
Q 022988 180 ILHAAGPAKVVITSIN 195 (289)
Q Consensus 180 ~L~~~g~~~Vvvt~g~ 195 (289)
++.+.| -.|-|++|-
T Consensus 159 ~~~~~g-~~vAVaGGI 173 (217)
T COG0269 159 KLSDLG-AKVAVAGGI 173 (217)
T ss_pred HhhccC-ceEEEecCC
Confidence 776666 468888874
No 181
>PRK14738 gmk guanylate kinase; Provisional
Probab=20.14 E-value=5.1e+02 Score=21.53 Aligned_cols=39 Identities=15% Similarity=0.130 Sum_probs=24.4
Q ss_pred CCCCeeeccCCCCCCeEEEEeccCccCccchhhcHHHHHhCCCc
Q 022988 1 MAPPILSLALPSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYD 44 (289)
Q Consensus 1 ~~~~~~~~~~~~~~~~vl~i~g~~~~G~vG~~~~~~~l~~~Gv~ 44 (289)
|++|.+.= .-..+++++|.|-. ++|.+..+..|.+.+-.
T Consensus 1 ~~~~~~~~--~~~~~~~ivi~Gps---G~GK~tl~~~L~~~~~~ 39 (206)
T PRK14738 1 MMNPWLFN--KPAKPLLVVISGPS---GVGKDAVLARMRERKLP 39 (206)
T ss_pred CCCccccC--CCCCCeEEEEECcC---CCCHHHHHHHHHhcCCc
Confidence 55555532 23367788888887 55666666777766643
No 182
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=20.13 E-value=6e+02 Score=25.45 Aligned_cols=116 Identities=17% Similarity=0.137 Sum_probs=59.6
Q ss_pred cCccchhhcHHHHHhCCCcceeeceEEe--e--cCCCCCCcceeeCCHHHHHHHHHHHHhCCCcccCEEEEeecCCHhHH
Q 022988 26 QGYVGNKSAVFPLQLLGYDVDPIHSVQF--S--NHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFL 101 (289)
Q Consensus 26 ~G~vG~~~~~~~l~~~Gv~~~~v~~~~~--~--~~tg~~~i~g~~l~~~~~~~~~~~l~~~~~~~~~~v~~G~l~~~~~~ 101 (289)
+|.+|.. ..+.|++.|+++..+..... + ...|+..+.|+..+++-++ +...-+++++++-. .+ .
T Consensus 408 ~Gr~G~~-va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~-------~agi~~A~~vvv~~-~d---~ 475 (621)
T PRK03562 408 FGRFGQI-VGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLE-------SAGAAKAEVLINAI-DD---P 475 (621)
T ss_pred cChHHHH-HHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHH-------hcCCCcCCEEEEEe-CC---H
Confidence 4566653 34568889988765533210 0 1224444556655543332 22222456555432 23 3
Q ss_pred HHHHHHHHHHHhcCCCceEEEccccccCCCccCChhHHHHHHHhhcCCceEEcCCHHHHHHhhC
Q 022988 102 NTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTG 165 (289)
Q Consensus 102 ~~~~~~l~~~k~~~~~~~vv~Dp~~~~~g~~~~~~~~~~~l~~~ll~~~dii~pN~~E~~~L~g 165 (289)
+....++..+|+.+|+.+++.=. . +.+..+.+++ -.+|.+.+...|.....+
T Consensus 476 ~~n~~i~~~ar~~~p~~~iiaRa----~-----d~~~~~~L~~---~Gad~v~~e~~e~sl~l~ 527 (621)
T PRK03562 476 QTSLQLVELVKEHFPHLQIIARA----R-----DVDHYIRLRQ---AGVEKPERETFEGALKSG 527 (621)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEE----C-----CHHHHHHHHH---CCCCEEehhhHhHHHHHH
Confidence 34455666777777887765532 1 1222222222 267888777777655444
Done!