BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022989
(289 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7XZZ3|BAHL1_ORYSJ Probable E3 ubiquitin-protein ligase BAH1-like 1 OS=Oryza sativa
subsp. japonica GN=Os03g0650900 PE=2 SV=1
Length = 339
Score = 357 bits (915), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 171/290 (58%), Positives = 220/290 (75%), Gaps = 9/290 (3%)
Query: 1 MKFGETFTEYLHGDQERFLDKCSHVEYKRLKKVLKSCRTCKGLHDSACKTEQQWDEGKDI 60
MKFG + EYL Q+++L KCSHVEYKRLKKVLK CR + L + +QQ EG +
Sbjct: 1 MKFGAIYEEYLREQQDKYLTKCSHVEYKRLKKVLKKCRVGRSLQEDCPNGDQQ--EGNNE 58
Query: 61 SESQLCQCQSSCQLCDHMFFSELMKEASDIAGCFSSRARHLLHLHVASGMQRYVLRIRQC 120
S +C+C +SC LCD MFF+EL KEAS+IAGCFSSR + LL+LHV SG RY+ R+RQC
Sbjct: 59 S-PDICKC-NSCTLCDQMFFTELTKEASEIAGCFSSRVQRLLNLHVPSGFLRYIWRVRQC 116
Query: 121 FKNDQTAMIEEGRVLIEYIIMNAIAIRKILKKYDKVHKSVNGKNFKSKMRAEHIELLQSP 180
F +DQ M++EGR+L+ Y+ MNAIAIRKILKKYDK+H SV+G++FKSKM+ +HIELLQSP
Sbjct: 117 FIDDQQIMVQEGRMLLNYVTMNAIAIRKILKKYDKIHGSVSGRDFKSKMQTDHIELLQSP 176
Query: 181 WLIELGGFYLNFNGLNCGAS-----SEFSGHFSFDFNASRPVMTLALPSSIKLEYDLTCA 235
WLIELG F+LN N + + +EF +FS D +RP+MT+A+ ++K EY LTC
Sbjct: 177 WLIELGAFHLNCNSSDIDETVGFLKNEFFKNFSCDLTEARPLMTMAISETMKYEYSLTCP 236
Query: 236 VCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREE 285
+CLD +FNPYALSCGHLFCK CAC AASV +F+G+KSA P++KCP+CR +
Sbjct: 237 ICLDTLFNPYALSCGHLFCKGCACGAASVYIFQGVKSAPPEAKCPVCRSD 286
>sp|A2XK56|BAHL1_ORYSI Probable E3 ubiquitin-protein ligase BAH1-like 1 OS=Oryza sativa
subsp. indica GN=OsI_12825 PE=3 SV=1
Length = 339
Score = 357 bits (915), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 171/290 (58%), Positives = 220/290 (75%), Gaps = 9/290 (3%)
Query: 1 MKFGETFTEYLHGDQERFLDKCSHVEYKRLKKVLKSCRTCKGLHDSACKTEQQWDEGKDI 60
MKFG + EYL Q+++L KCSHVEYKRLKKVLK CR + L + +QQ EG +
Sbjct: 1 MKFGAIYEEYLREQQDKYLTKCSHVEYKRLKKVLKKCRVGRSLQEDCPNGDQQ--EGNNE 58
Query: 61 SESQLCQCQSSCQLCDHMFFSELMKEASDIAGCFSSRARHLLHLHVASGMQRYVLRIRQC 120
S +C+C +SC LCD MFF+EL KEAS+IAGCFSSR + LL+LHV SG RY+ R+RQC
Sbjct: 59 S-PDICKC-NSCTLCDQMFFTELTKEASEIAGCFSSRVQRLLNLHVPSGFLRYIWRVRQC 116
Query: 121 FKNDQTAMIEEGRVLIEYIIMNAIAIRKILKKYDKVHKSVNGKNFKSKMRAEHIELLQSP 180
F +DQ M++EGR+L+ Y+ MNAIAIRKILKKYDK+H SV+G++FKSKM+ +HIELLQSP
Sbjct: 117 FIDDQQIMVQEGRMLLNYVTMNAIAIRKILKKYDKIHGSVSGRDFKSKMQTDHIELLQSP 176
Query: 181 WLIELGGFYLNFNGLNCGAS-----SEFSGHFSFDFNASRPVMTLALPSSIKLEYDLTCA 235
WLIELG F+LN N + + +EF +FS D +RP+MT+A+ ++K EY LTC
Sbjct: 177 WLIELGAFHLNCNSSDIDETVGFLKNEFFKNFSCDLTEARPLMTMAISETMKYEYSLTCP 236
Query: 236 VCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREE 285
+CLD +FNPYALSCGHLFCK CAC AASV +F+G+KSA P++KCP+CR +
Sbjct: 237 ICLDTLFNPYALSCGHLFCKGCACGAASVYIFQGVKSAPPEAKCPVCRSD 286
>sp|Q8GW10|BAH1L_ARATH Probable E3 ubiquitin-protein ligase BAH1-like OS=Arabidopsis
thaliana GN=RF178 PE=2 SV=1
Length = 335
Score = 341 bits (874), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 178/291 (61%), Positives = 218/291 (74%), Gaps = 17/291 (5%)
Query: 1 MKFGETFTEYLHGDQERFLDKCSHVEYKRLKKVLKSCRTCKGLHDSACKTEQQWDEGKDI 60
MKFGETFTEYLHG++E FL+KC VEYK+LKKVLK C+TC D+G+ I
Sbjct: 1 MKFGETFTEYLHGEEEWFLEKCRFVEYKKLKKVLKKCKTCNSTKS---------DDGQII 51
Query: 61 SESQL------CQCQSSCQLCDHMFFSELMKEASDIAGCFSSRARHLLHLHVASGMQRYV 114
+ C+C++ C CD MFF ELMKEA+DIAG F SR RHLLHLHVA+GMQRY+
Sbjct: 52 PSATSSSLSDSCECKA-CPWCDQMFFEELMKEATDIAGFFRSRVRHLLHLHVATGMQRYM 110
Query: 115 LRIRQCFKNDQTAMIEEGRVLIEYIIMNAIAIRKILKKYDKVHKSVNGKNFKSKMRAEHI 174
+R+R+CF +++ A+++EG++LI+YI MNAIAIRKILKKYDKVH S NGKNFK KMRAE I
Sbjct: 111 IRLRRCFTDEKQALVQEGQILIQYITMNAIAIRKILKKYDKVHSSENGKNFKLKMRAERI 170
Query: 175 ELLQSPWLIELGGFYLNFNGLNCGASSEFSGHFS-FDFNASRPVMTLALPSSIKLEYDLT 233
ELL SPWLIELG FYLN N G G + + N +PV+ L LP+SI+LEYDLT
Sbjct: 171 ELLHSPWLIELGAFYLNSGLDNVGNFKNSFGRVACENLNEDQPVLKLMLPNSIELEYDLT 230
Query: 234 CAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICRE 284
CA+CL+ VFNPYAL CGH+FC CACSAASV++F+G+K+A SKCPICRE
Sbjct: 231 CAICLETVFNPYALKCGHIFCNSCACSAASVLIFQGIKAAPRHSKCPICRE 281
>sp|Q9SRX9|BAH1_ARATH E3 ubiquitin-protein ligase BAH1 OS=Arabidopsis thaliana GN=BAH1
PE=1 SV=1
Length = 335
Score = 223 bits (568), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 117/296 (39%), Positives = 177/296 (59%), Gaps = 25/296 (8%)
Query: 1 MKFGETFTEYLHGDQERFLDKCSHVEYKRLKKVLKSCRTCKGLHDSACKTEQQWDEGKDI 60
MKF + + EY+ G +E+ V +K+LKK+LK CR
Sbjct: 1 MKFCKKYEEYMQGQKEK--KNLPGVGFKKLKKILKRCR------------RNHVPSRISF 46
Query: 61 SESQLCQCQSSCQLCDHMFFSELMKEASDIAGCFSSRARHLLHLHVASGMQRYVLRIR-Q 119
+++ C C +CD FF EL+KE D+ G F+ A+ LL LH+ASG + + +R
Sbjct: 47 TDAINHNCSRECPVCDGTFFPELLKEMEDVVGWFNEHAQKLLELHLASGFTKCLTWLRGN 106
Query: 120 CFKNDQTAMIEEGRVLIEYIIMNAIAIRKILKKYDKVHKSVNGKNFKSKMRAEHIELLQS 179
K D +I+EG+ L+ Y ++NA+AIRKILKKYDK+H+S G+ FK++++ IE+LQS
Sbjct: 107 SRKKDHHGLIQEGKDLVNYALINAVAIRKILKKYDKIHESRQGQAFKTQVQKMRIEILQS 166
Query: 180 PWLIELGGFYLNFNGLNCGASSEFSG-----HFSFD-----FNASRPVMTLALPSSIKLE 229
PWL EL F++N + + + H FD F+ +P+++ L S+K++
Sbjct: 167 PWLCELMAFHINLKESKKESGATITSPPPPVHALFDGCALTFDDGKPLLSCELSDSVKVD 226
Query: 230 YDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREE 285
DLTC++CLD VF+P +L+CGH++C +CACSAASV V +GLK+A KCP+CRE+
Sbjct: 227 IDLTCSICLDTVFDPISLTCGHIYCYMCACSAASVNVVDGLKTAEATEKCPLCRED 282
>sp|B8B5U8|BAHL2_ORYSI Probable E3 ubiquitin-protein ligase BAH1-like 1 OS=Oryza sativa
subsp. indica GN=OsI_27296 PE=3 SV=1
Length = 321
Score = 215 bits (547), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 107/239 (44%), Positives = 156/239 (65%), Gaps = 6/239 (2%)
Query: 48 CKTEQQWDEGKDISESQLCQCQSSCQLCDHMFFSELMKEASDIAGCFSSRARHLLHLHVA 107
C+++ Q E S + C C +CD FF L+ E S + GCF+ +A+ LL LH+A
Sbjct: 33 CRSDLQSHENDGSSAGR---CPGHCSVCDGSFFPSLLNEMSAVVGCFNEKAKKLLELHLA 89
Query: 108 SGMQRYVLRIRQCFKNDQTAMIEEGRVLIEYIIMNAIAIRKILKKYDKVHKSVNGKNFKS 167
SG ++Y + A+I++G+ L+ Y I+NA+A+RKILKKYDK+H S G+ FK+
Sbjct: 90 SGFKKYTMWFTSKGHKSHGALIQQGKDLVTYAIINAVAMRKILKKYDKIHYSKQGQEFKA 149
Query: 168 KMRAEHIELLQSPWLIELGGFYLNF--NGLNCGASSEFSGHFSFDFNASRPVMTLALPSS 225
+ ++ HIE+LQSPWL EL FY+N + N GA F G S F+ +P ++ L S
Sbjct: 150 QAQSLHIEILQSPWLCELMAFYMNLRRSKKNNGAMELF-GDCSLVFDDDKPTISCNLFDS 208
Query: 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICRE 284
++++ LTC++CLD VF+P ALSCGH++C LC+CSAASV + +GLKSA SKCP+CR+
Sbjct: 209 MRVDISLTCSICLDTVFDPVALSCGHIYCYLCSCSAASVTIVDGLKSAERKSKCPLCRQ 267
>sp|Q7XI73|BAHL2_ORYSJ Probable E3 ubiquitin-protein ligase BAH1-like 2 OS=Oryza sativa
subsp. japonica GN=Os07g0673200 PE=2 SV=1
Length = 321
Score = 214 bits (546), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 107/239 (44%), Positives = 156/239 (65%), Gaps = 6/239 (2%)
Query: 48 CKTEQQWDEGKDISESQLCQCQSSCQLCDHMFFSELMKEASDIAGCFSSRARHLLHLHVA 107
C+++ Q E S + C C +CD FF L+ E S + GCF+ +A+ LL LH+A
Sbjct: 33 CRSDLQSHENDGSSAGR---CPGHCSVCDGSFFPSLLNEMSAVIGCFNEKAKKLLELHLA 89
Query: 108 SGMQRYVLRIRQCFKNDQTAMIEEGRVLIEYIIMNAIAIRKILKKYDKVHKSVNGKNFKS 167
SG ++Y + A+I++G+ L+ Y I+NA+A+RKILKKYDK+H S G+ FK+
Sbjct: 90 SGFKKYTMWFTSKGHKSHGALIQQGKDLVTYAIINAVAMRKILKKYDKIHYSKQGQEFKA 149
Query: 168 KMRAEHIELLQSPWLIELGGFYLNF--NGLNCGASSEFSGHFSFDFNASRPVMTLALPSS 225
+ ++ HIE+LQSPWL EL FY+N + N GA F G S F+ +P ++ L S
Sbjct: 150 QAQSLHIEILQSPWLCELMAFYMNLRRSKKNNGAMELF-GDCSLVFDDDKPTISCNLFDS 208
Query: 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICRE 284
++++ LTC++CLD VF+P ALSCGH++C LC+CSAASV + +GLKSA SKCP+CR+
Sbjct: 209 MRVDISLTCSICLDTVFDPVALSCGHIYCYLCSCSAASVTIVDGLKSAERKSKCPLCRQ 267
>sp|Q6PCN7|HLTF_MOUSE Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1
SV=1
Length = 1003
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 231 DLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELAGN 289
D CA+CLD + P C H+FCK C C + S P +KCP+CR E+ G+
Sbjct: 751 DEECAICLDSLTFPVITHCAHVFCKPCICQV--------IHSEQPHAKCPLCRNEIHGD 801
>sp|Q95216|HLTF_RABIT Helicase-like transcription factor OS=Oryctolagus cuniculus GN=HLTF
PE=1 SV=1
Length = 1005
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Query: 231 DLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELAGN 289
D CA+CLD + P C H+FCK C C +++ P +KCP+CR ++ G+
Sbjct: 754 DEECAICLDSLTVPVITHCAHVFCKPCICQC--------IQNEQPHAKCPLCRNDIHGD 804
>sp|O64425|RMA1_ARATH E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana GN=RMA1
PE=1 SV=1
Length = 249
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 202 EFSGHFSFDFNASRP-VMTLALPSSIKLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACS 260
E G +F F + +P +T+++PS + + C +CLD V P CGHLFC C
Sbjct: 15 ELYGEGAFCFKSKKPEPITVSVPSDDTDDSNFDCNICLDSVQEPVVTLCGHLFCWPCIHK 74
Query: 261 AASVMVFEGLKSASPDSKCPICREELA 287
V F +CP+C+ +++
Sbjct: 75 WLDVQSFSTSDEYQRHRQCPVCKSKVS 101
>sp|Q8IYM9|TRI22_HUMAN E3 ubiquitin-protein ligase TRIM22 OS=Homo sapiens GN=TRIM22 PE=1
SV=1
Length = 498
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 9/67 (13%)
Query: 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACS--AASVMVFEGLKSASPDSKCPICR 283
+ +E ++TC +CL+L+ P +L CGH FC+ C + SV++ G +S CP+C+
Sbjct: 7 VDIEKEVTCPICLELLTEPLSLDCGHSFCQACITAKIKESVIISRG------ESSCPVCQ 60
Query: 284 EEL-AGN 289
GN
Sbjct: 61 TRFQPGN 67
>sp|Q14527|HLTF_HUMAN Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1
SV=2
Length = 1009
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 231 DLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREEL 286
D CA+CLD + P C H+FCK C C +++ P +KCP+CR ++
Sbjct: 757 DEECAICLDSLTVPVITHCAHVFCKPCICQV--------IQNEQPHAKCPLCRNDI 804
>sp|Q3ZEE5|TRIM5_HYLLA Tripartite motif-containing protein 5 OS=Hylobates lar GN=TRIM5
PE=3 SV=1
Length = 493
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 6/58 (10%)
Query: 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICR 283
+ ++ ++TC +CL+L+ P +L CGH FC+ C + + +G +S CP+CR
Sbjct: 7 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKTSMPDGERS------CPVCR 58
>sp|Q32L60|TRI13_BOVIN E3 ubiquitin-protein ligase TRIM13 OS=Bos taurus GN=TRIM13 PE=2
SV=2
Length = 407
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 228 LEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELA 287
LE DLTC +C L +P L C H FCK C V L +SP KCP CR+E +
Sbjct: 4 LEEDLTCPICCSLFDDPRVLPCSHNFCKKCLEGILEGNVRNSLWRSSP-FKCPTCRKETS 62
Query: 288 GN 289
Sbjct: 63 AT 64
>sp|Q9CYB0|TRI13_MOUSE E3 ubiquitin-protein ligase TRIM13 OS=Mus musculus GN=Trim13 PE=2
SV=1
Length = 407
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 228 LEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELA 287
LE DLTC +C L +P L C H FCK C V L SP KCP CR+E +
Sbjct: 4 LEEDLTCPICCSLFDDPRVLPCSHNFCKKCLEGLLEGNVRNSLWRPSP-FKCPTCRKETS 62
Query: 288 GN 289
Sbjct: 63 AT 64
>sp|Q8BGE7|TRIM6_MOUSE Tripartite motif-containing protein 6 OS=Mus musculus GN=Trim6 PE=2
SV=1
Length = 488
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 6/59 (10%)
Query: 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVF-EGLKSASPDSKCPICR 283
+ + ++TC +CL+L+ P ++ CGH FC++C ++ VF +G +S+ CP+CR
Sbjct: 7 VDIRDEVTCPICLELLTEPLSIDCGHSFCQVCIIGNSNNSVFGQGGRSS-----CPVCR 60
>sp|Q5M7V1|TRI13_RAT Tripartite motif-containing 13 OS=Rattus norvegicus GN=Trim13 PE=2
SV=1
Length = 407
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 228 LEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELA 287
LE DLTC +C L +P L C H FCK C V L SP KCP CR+E +
Sbjct: 4 LEEDLTCPICCSLFDDPRVLPCSHNFCKKCLEGLLEGNVRNSLWRPSP-FKCPTCRKETS 62
Query: 288 GN 289
Sbjct: 63 AT 64
>sp|Q1ACD7|TRIM5_NOMLE Tripartite motif-containing protein 5 OS=Nomascus leucogenys
GN=TRIM5 PE=3 SV=1
Length = 494
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLC-ACSAASVMVFEGLKSASPDSKCPICR 283
+ ++ ++TC +CL+L+ P +L CGH FC+ C + + M EG +S CP+CR
Sbjct: 7 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKTSMPDEGERS------CPVCR 59
>sp|Q5D7J0|TRIM5_COLGU Tripartite motif-containing protein 5 OS=Colobus guereza GN=TRIM5
PE=3 SV=1
Length = 495
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLC--ACSAASVMVFEGLKSASPDSKCPICR 283
+ ++ ++TC +CL+L+ P +L CGH FC+ C A S++ EG +S CP+CR
Sbjct: 7 VNIKEEVTCPICLELLTEPLSLHCGHSFCQACITANHKKSMLYKEGERS------CPVCR 60
>sp|Q5D7I9|TRIM5_PYGNE Tripartite motif-containing protein 5 OS=Pygathrix nemaeus GN=TRIM5
PE=3 SV=1
Length = 495
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLC--ACSAASVMVFEGLKSASPDSKCPICR 283
+ ++ ++TC +CL+L+ P +L CGH FC+ C A S++ EG +S CP+CR
Sbjct: 7 VNIKEEVTCPICLELLTEPLSLHCGHSFCQACITANHKKSMLYKEGERS------CPVCR 60
>sp|Q1ACD6|TRIM5_HYLSY Tripartite motif-containing protein 5 OS=Hylobates syndactylus
GN=TRIM5 PE=3 SV=1
Length = 494
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLC-ACSAASVMVFEGLKSASPDSKCPICR 283
+ ++ ++TC +CL+L+ P +L CGH FC+ C + + M EG +S CP+CR
Sbjct: 7 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKTSMPDEGERS------CPVCR 59
>sp|Q99PQ1|TR12A_MOUSE Tripartite motif-containing protein 12A OS=Mus musculus GN=Trim12a
PE=2 SV=1
Length = 284
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 228 LEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICR 283
L+ ++TC VCL+L+ P + CGH FC+ C + FE +K CP+CR
Sbjct: 9 LKEEVTCPVCLNLMVKPVSADCGHTFCQGCI-----TLYFESIKCDKKVFICPVCR 59
>sp|Q2YEM8|TRIM5_HOOHO Tripartite motif-containing protein 5 OS=Hoolock hoolock GN=TRIM5
PE=3 SV=1
Length = 494
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLC-ACSAASVMVFEGLKSASPDSKCPICR 283
+ ++ ++TC +CL+L+ P +L CGH FC+ C + + M EG +S CP+CR
Sbjct: 7 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKTSMPDEGERS------CPVCR 59
>sp|Q58DK8|TRI38_BOVIN Tripartite motif-containing protein 38 OS=Bos taurus GN=TRIM38 PE=2
SV=1
Length = 460
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Query: 224 SSIKLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSK---CP 280
+S K+ + TC++CL L+ N ++SCGH +C +C S FE L +P K CP
Sbjct: 2 ASKKMREEATCSICLHLMTNAVSISCGHSYCHVCIVS-----FFENLNRMTPGLKTFSCP 56
Query: 281 ICR 283
CR
Sbjct: 57 QCR 59
>sp|O60858|TRI13_HUMAN E3 ubiquitin-protein ligase TRIM13 OS=Homo sapiens GN=TRIM13 PE=1
SV=2
Length = 407
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 228 LEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELA 287
LE DLTC +C L +P L C H FCK C V L +P KCP CR+E +
Sbjct: 4 LEEDLTCPICCSLFDDPRVLPCSHNFCKKCLEGILEGSVRNSLWRPAP-FKCPTCRKETS 62
Query: 288 GN 289
Sbjct: 63 AT 64
>sp|Q5D7J2|TRIM5_PAPAN Tripartite motif-containing protein 5 OS=Papio anubis GN=TRIM5 PE=3
SV=1
Length = 497
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLC--ACSAASVMVFEGLKSASPDSKCPICR 283
+ ++ ++TC +CL+L+ P +L CGH FC+ C A S++ EG +S CP+CR
Sbjct: 7 LNVKEEVTCPICLELLTEPLSLPCGHSFCQACITANHRKSMLYKEGERS------CPVCR 60
>sp|Q2YEN0|TRIM5_MACNE Tripartite motif-containing protein 5 OS=Macaca nemestrina GN=TRIM5
PE=3 SV=1
Length = 495
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLC--ACSAASVMVFEGLKSASPDSKCPICR 283
+ ++ ++TC +CL+L+ P +L CGH FC+ C A S++ EG +S CP+CR
Sbjct: 7 LNVKEEVTCPICLELLTEPLSLHCGHSFCQACITANHKKSMLYKEGERS------CPVCR 60
>sp|Q587N6|TRIM5_MACFA Tripartite motif-containing protein 5 OS=Macaca fascicularis
GN=TRIM5 PE=2 SV=1
Length = 495
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLC--ACSAASVMVFEGLKSASPDSKCPICR 283
+ ++ ++TC +CL+L+ P +L CGH FC+ C A S++ EG +S CP+CR
Sbjct: 7 LNVKEEVTCPICLELLTEPLSLHCGHSFCQACITANHKKSMLYKEGERS------CPVCR 60
>sp|Q0PF16|TRIM5_MACMU Tripartite motif-containing protein 5 OS=Macaca mulatta GN=TRIM5
PE=1 SV=2
Length = 497
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLC--ACSAASVMVFEGLKSASPDSKCPICR 283
+ ++ ++TC +CL+L+ P +L CGH FC+ C A S++ EG +S CP+CR
Sbjct: 7 LNVKEEVTCPICLELLTEPLSLHCGHSFCQACITANHKKSMLYKEGERS------CPVCR 60
>sp|Q2YEN2|TRIM5_MACAS Tripartite motif-containing protein 5 OS=Macaca assamensis GN=TRIM5
PE=3 SV=1
Length = 497
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLC--ACSAASVMVFEGLKSASPDSKCPICR 283
+ ++ ++TC +CL+L+ P +L CGH FC+ C A S++ EG +S CP+CR
Sbjct: 7 LNVKEEVTCPICLELLTEPLSLHCGHSFCQACITANHKKSMLYKEGERS------CPVCR 60
>sp|Q503I2|TRI13_DANRE Tripartite motif-containing 13 OS=Danio rerio GN=trim13 PE=2 SV=1
Length = 404
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 228 LEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSAS--PDSKCPICREE 285
LE DLTC +C L +P L C H FCK C + +G +S + P KCP CR+E
Sbjct: 4 LEEDLTCPICCCLFEDPRVLPCSHSFCKKCLEG-----ILDGNRSPTWRPPFKCPTCRKE 58
Query: 286 LAGN 289
N
Sbjct: 59 TVHN 62
>sp|Q62191|RO52_MOUSE E3 ubiquitin-protein ligase TRIM21 OS=Mus musculus GN=Trim21 PE=1
SV=1
Length = 470
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 10/60 (16%)
Query: 227 KLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREEL 286
K+ ++TC++CLD + P ++ CGH FCK C +FE K+ S CP CR++
Sbjct: 13 KMWEEVTCSICLDPMVEPMSIECGHCFCKEC--------IFEVGKNGG--SSCPECRQQF 62
>sp|O77666|TRI26_PIG Tripartite motif-containing protein 26 OS=Sus scrofa GN=TRIM26 PE=3
SV=2
Length = 545
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 228 LEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREEL 286
LE ++TC++CLD + +P + CGH+FC+ C V G + P K P +E +
Sbjct: 10 LEEEVTCSICLDYLRDPVTIDCGHVFCRSCTTDIHPV---SGGRPVCPLCKKPFTKENI 65
>sp|Q9C030|TRIM6_HUMAN Tripartite motif-containing protein 6 OS=Homo sapiens GN=TRIM6 PE=1
SV=1
Length = 488
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
Query: 220 LALPSSIKLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAA--SVMVFEGLKSASPDS 277
+ P + + ++TC +CL+L+ P ++ CGH FC+ C SV+ EG +S
Sbjct: 1 MTSPVLVDIREEVTCPICLELLTEPLSIDCGHSFCQACITPNGRESVIGQEGERS----- 55
Query: 278 KCPICR 283
CP+C+
Sbjct: 56 -CPVCQ 60
>sp|Q9C035|TRIM5_HUMAN Tripartite motif-containing protein 5 OS=Homo sapiens GN=TRIM5 PE=1
SV=1
Length = 493
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLC-ACSAASVMVFEGLKSASPDSKCPICR 283
+ ++ ++TC +CL+L+ P +L CGH FC+ C + M+ +G +S CP+CR
Sbjct: 7 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKG------ESSCPVCR 59
>sp|Q5D7J1|TRIM5_PANTR Tripartite motif-containing protein 5 OS=Pan troglodytes GN=TRIM5
PE=2 SV=1
Length = 493
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLC-ACSAASVMVFEGLKSASPDSKCPICR 283
+ ++ ++TC +CL+L+ P +L CGH FC+ C + M+ +G +S CP+CR
Sbjct: 7 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKG------ESSCPVCR 59
>sp|Q1ACD8|TRIM5_PANPA Tripartite motif-containing protein 5 OS=Pan paniscus GN=TRIM5 PE=3
SV=1
Length = 493
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLC-ACSAASVMVFEGLKSASPDSKCPICR 283
+ ++ ++TC +CL+L+ P +L CGH FC+ C + M+ +G +S CP+CR
Sbjct: 7 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKG------ESSCPVCR 59
>sp|Q5C8T6|TRIM5_GORGO Tripartite motif-containing protein 5 OS=Gorilla gorilla gorilla
GN=TRIM5 PE=2 SV=1
Length = 493
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLC-ACSAASVMVFEGLKSASPDSKCPICR 283
+ ++ ++TC +CL+L+ P +L CGH FC+ C + M+ +G +S CP+CR
Sbjct: 7 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHEKSMLDKG------ESSCPVCR 59
>sp|Q5C8U3|TRIM5_CERTA Tripartite motif-containing protein 5 OS=Cercopithecus tantalus
GN=TRIM5 PE=2 SV=1
Length = 515
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICR 283
+ ++ ++TC +CL+L+ P +L CGH FC+ C + E + + CP+CR
Sbjct: 7 VNVKEEVTCPICLELLTEPLSLPCGHSFCQACITANHK----ESMLYKEEERSCPVCR 60
>sp|Q7YR34|TRI26_PANTR Tripartite motif-containing protein 26 OS=Pan troglodytes GN=TRIM26
PE=3 SV=1
Length = 539
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 228 LEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREEL 286
LE ++TC++CLD + +P + CGH+FC+ C V G + P K P +E +
Sbjct: 10 LEEEVTCSICLDYLRDPVTIDCGHVFCRSC---TTDVRPISGSRPVCPLCKKPFKKENI 65
>sp|Q12899|TRI26_HUMAN Tripartite motif-containing protein 26 OS=Homo sapiens GN=TRIM26
PE=2 SV=1
Length = 539
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 228 LEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREEL 286
LE ++TC++CLD + +P + CGH+FC+ C V G + P K P +E +
Sbjct: 10 LEEEVTCSICLDYLRDPVTIDCGHVFCRSC---TTDVRPISGSRPVCPLCKKPFKKENI 65
>sp|O54952|BRCA1_RAT Breast cancer type 1 susceptibility protein homolog OS=Rattus
norvegicus GN=Brca1 PE=1 SV=1
Length = 1817
Score = 45.1 bits (105), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Query: 232 LTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREEL 286
L C +CL+L+ P + C H+FCK C + + L S+CP+C+ E+
Sbjct: 22 LECPICLELIKEPVSTQCDHIFCKFC--------MLKLLNQKKGPSQCPLCKNEI 68
>sp|Q96BQ3|TRI43_HUMAN Tripartite motif-containing protein 43 OS=Homo sapiens GN=TRIM43
PE=2 SV=1
Length = 446
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Query: 231 DLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICRE 284
+LTC +CL+ + +P + CGH FC+ C C + + A + CP CRE
Sbjct: 12 ELTCVICLNYLVDPVTICCGHSFCRPCLCLS--------WEEAQSPANCPACRE 57
>sp|P87176|SLX8_SCHPO E3 ubiquitin-protein ligase complex slx8-rfp subunit slx8
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=slx8 PE=1 SV=1
Length = 269
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 216 PVMTLALPSSIKLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASP 275
P +PSS +L D C +CLD N CGH+FC C SA L + +
Sbjct: 189 PSKKQVVPSSQRL-ADYKCVICLDSPENLSCTPCGHIFCNFCILSA--------LGTTAA 239
Query: 276 DSKCPICREELAGN 289
KCP+CR ++ N
Sbjct: 240 TQKCPVCRRKVHPN 253
>sp|A6NCK2|TR43B_HUMAN Tripartite motif-containing protein 43B OS=Homo sapiens GN=TRIM43B
PE=3 SV=3
Length = 446
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Query: 231 DLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICRE 284
+LTC +CL+ + +P + CGH FC+ C C + + A + CP CRE
Sbjct: 12 ELTCVICLNYLVDPVTICCGHSFCRPCLCLS--------WEEAQSPANCPACRE 57
>sp|Q5BN31|TRIM5_SAIBB Tripartite motif-containing protein 5 OS=Saimiri boliviensis
boliviensis GN=TRIM5 PE=2 SV=1
Length = 494
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 9/67 (13%)
Query: 218 MTLALPSSIKLEYDLTCAVCLDLVFNPYALSCGHLFCKLC-ACSAASVMVFEGLKSASPD 276
M + SIK E +TC +CL+L+ P +L CGH FC+ C + M+ +G +S
Sbjct: 1 MASGILGSIKEE--VTCPICLELLTEPLSLDCGHSFCQACITANHKESMLHQGERS---- 54
Query: 277 SKCPICR 283
CP+CR
Sbjct: 55 --CPLCR 59
>sp|Q7YRV4|RO52_BOVIN E3 ubiquitin-protein ligase TRIM21 OS=Bos taurus GN=TRIM21 PE=2
SV=1
Length = 469
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 11/66 (16%)
Query: 218 MTLALPSSIKLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDS 277
M A+P ++ E ++TC++CLD + P ++ CGH FC+ C EG S
Sbjct: 1 MASAVPLTMMWE-EVTCSICLDPMVEPMSIECGHSFCQECISEVGK----EG------GS 49
Query: 278 KCPICR 283
CP+CR
Sbjct: 50 VCPVCR 55
>sp|Q5D7I2|TRIM5_PITPI Tripartite motif-containing protein 5 OS=Pithecia pithecia GN=TRIM5
PE=3 SV=1
Length = 494
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLC-ACSAASVMVFEGLKSASPDSKCPICR 283
+ ++ ++TC +CL+L+ P +L CGH FC+ C + M+ +G +S CP+CR
Sbjct: 7 MNIKEEVTCPICLELLTEPLSLDCGHSFCQACITANHKKSMLHQGERS------CPLCR 59
>sp|Q5D7H7|TRIM5_LAGLA Tripartite motif-containing protein 5 OS=Lagothrix lagotricha
GN=TRIM5 PE=3 SV=1
Length = 547
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
Query: 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSA-ASVMVFEGLKSASPDSKCPICR 283
+ ++ ++TC +CLDL+ P +L CGH FC+ C + + +G +S CP+CR
Sbjct: 7 VNIKEEVTCPICLDLLTEPLSLDCGHSFCQACITADHKESTLHQGERS------CPLCR 59
>sp|Q5D7I0|TRIM5_SAISC Tripartite motif-containing protein 5 OS=Saimiri sciureus GN=TRIM5
PE=3 SV=1
Length = 494
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
Query: 228 LEYDLTCAVCLDLVFNPYALSCGHLFCKLC-ACSAASVMVFEGLKSASPDSKCPICR 283
++ ++TC +CL+L+ P +L CGH FC+ C + M+ +G +S CP+CR
Sbjct: 9 IKEEVTCPICLELLTEPLSLDCGHSFCQACITANHKESMLHQGERS------CPLCR 59
>sp|Q587N7|TRIM5_CHLAE Tripartite motif-containing protein 5 OS=Chlorocebus aethiops
GN=TRIM5 PE=2 SV=1
Length = 515
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICR 283
+ ++ ++TC +CL+L+ P +L CGH FC+ C + E + + CP+CR
Sbjct: 7 LNVKEEVTCPICLELLTEPLSLPCGHSFCQACITANHK----ESMLYKEEERSCPVCR 60
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.136 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,938,436
Number of Sequences: 539616
Number of extensions: 3972056
Number of successful extensions: 12819
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 204
Number of HSP's that attempted gapping in prelim test: 12340
Number of HSP's gapped (non-prelim): 589
length of query: 289
length of database: 191,569,459
effective HSP length: 116
effective length of query: 173
effective length of database: 128,974,003
effective search space: 22312502519
effective search space used: 22312502519
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)