Query 022989
Match_columns 289
No_of_seqs 258 out of 1446
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 14:29:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022989.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022989hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ysl_A Tripartite motif-contai 99.3 2.6E-12 9E-17 91.9 6.7 54 227-288 16-69 (73)
2 1t1h_A Gspef-atpub14, armadill 99.3 1.6E-12 5.4E-17 94.4 4.6 51 228-288 5-55 (78)
3 2ecy_A TNF receptor-associated 99.3 1.7E-12 6E-17 91.2 4.7 52 228-289 12-63 (66)
4 2yur_A Retinoblastoma-binding 99.3 2.1E-12 7.2E-17 93.0 4.7 51 227-286 11-62 (74)
5 2djb_A Polycomb group ring fin 99.3 2.8E-12 9.5E-17 91.8 5.2 52 226-288 10-62 (72)
6 3ztg_A E3 ubiquitin-protein li 99.3 1.9E-12 6.7E-17 96.9 4.4 51 227-286 9-60 (92)
7 2ecw_A Tripartite motif-contai 99.3 6.4E-12 2.2E-16 92.1 7.0 58 226-288 14-71 (85)
8 4ayc_A E3 ubiquitin-protein li 99.3 1.5E-12 5.1E-17 105.1 3.3 48 229-287 51-98 (138)
9 3fl2_A E3 ubiquitin-protein li 99.3 2.2E-12 7.4E-17 102.1 3.5 51 228-288 49-99 (124)
10 3lrq_A E3 ubiquitin-protein li 99.2 2.1E-12 7.1E-17 98.5 2.6 53 226-288 17-70 (100)
11 2egp_A Tripartite motif-contai 99.2 3.4E-12 1.1E-16 92.7 3.5 58 227-288 8-65 (79)
12 2csy_A Zinc finger protein 183 99.2 7.6E-12 2.6E-16 91.5 4.8 48 229-287 13-60 (81)
13 2d8t_A Dactylidin, ring finger 99.2 8.5E-12 2.9E-16 89.0 4.9 48 229-287 13-60 (71)
14 2ecv_A Tripartite motif-contai 99.2 9.3E-12 3.2E-16 91.3 4.9 57 227-288 15-71 (85)
15 2ct2_A Tripartite motif protei 99.2 1.3E-11 4.6E-16 91.2 4.8 54 227-288 11-68 (88)
16 2kr4_A Ubiquitin conjugation f 99.2 1.3E-11 4.5E-16 91.3 4.3 48 229-287 12-59 (85)
17 2kre_A Ubiquitin conjugation f 99.2 3.1E-11 1.1E-15 92.1 6.5 49 229-288 27-75 (100)
18 2ysj_A Tripartite motif-contai 99.2 2E-11 6.9E-16 84.8 5.0 48 227-282 16-63 (63)
19 3l11_A E3 ubiquitin-protein li 99.2 4.9E-12 1.7E-16 98.7 1.8 50 228-287 12-61 (115)
20 1z6u_A NP95-like ring finger p 99.2 1E-11 3.5E-16 101.7 3.7 51 228-288 75-125 (150)
21 2ckl_A Polycomb group ring fin 99.2 1.5E-11 5.1E-16 94.9 4.3 51 227-288 11-62 (108)
22 1g25_A CDK-activating kinase a 99.2 1.4E-11 4.7E-16 86.3 3.6 50 230-289 2-56 (65)
23 1wgm_A Ubiquitin conjugation f 99.2 3.9E-11 1.3E-15 91.2 6.2 50 228-288 19-69 (98)
24 2y43_A E3 ubiquitin-protein li 99.2 1.2E-11 4E-16 94.0 3.2 52 226-288 17-69 (99)
25 2ecj_A Tripartite motif-contai 99.1 4.1E-11 1.4E-15 81.6 5.2 48 227-282 11-58 (58)
26 2ea6_A Ring finger protein 4; 99.1 1.5E-11 5.2E-16 86.6 2.9 50 228-288 12-68 (69)
27 3ng2_A RNF4, snurf, ring finge 99.1 1.2E-11 4.2E-16 87.8 2.3 49 229-288 8-63 (71)
28 1jm7_A BRCA1, breast cancer ty 99.1 1.4E-11 4.9E-16 95.3 2.5 53 228-288 18-70 (112)
29 3hct_A TNF receptor-associated 99.1 2.8E-11 9.7E-16 94.9 4.0 52 227-288 14-65 (118)
30 1e4u_A Transcriptional repress 99.1 5.9E-11 2E-15 86.4 4.7 51 228-288 8-62 (78)
31 1bor_A Transcription factor PM 99.1 2.6E-11 8.9E-16 82.5 2.4 45 229-287 4-48 (56)
32 3knv_A TNF receptor-associated 99.1 2.9E-11 1E-15 97.9 2.9 50 227-286 27-76 (141)
33 2ecn_A Ring finger protein 141 99.1 5.6E-11 1.9E-15 84.2 3.8 49 228-288 12-60 (70)
34 1rmd_A RAG1; V(D)J recombinati 99.1 4.1E-11 1.4E-15 93.6 3.3 52 227-288 19-70 (116)
35 1jm7_B BARD1, BRCA1-associated 99.1 1.7E-11 5.9E-16 96.0 0.8 50 226-288 17-67 (117)
36 2ckl_B Ubiquitin ligase protei 99.1 5.7E-11 1.9E-15 98.5 3.6 51 227-287 50-101 (165)
37 2xeu_A Ring finger protein 4; 99.1 3.6E-11 1.2E-15 83.4 1.9 48 230-288 2-56 (64)
38 1iym_A EL5; ring-H2 finger, ub 99.1 1.2E-10 4E-15 78.5 4.4 48 229-287 3-54 (55)
39 2ect_A Ring finger protein 126 99.0 1.5E-10 5.3E-15 83.7 4.7 50 228-288 12-64 (78)
40 2ecm_A Ring finger and CHY zin 99.0 1.1E-10 3.8E-15 78.6 3.4 48 230-288 4-55 (55)
41 2c2l_A CHIP, carboxy terminus 99.0 8.3E-11 2.9E-15 104.8 3.6 50 229-288 206-255 (281)
42 2kiz_A E3 ubiquitin-protein li 99.0 2.3E-10 7.8E-15 80.8 4.9 49 229-288 12-63 (69)
43 1chc_A Equine herpes virus-1 r 99.0 1.2E-10 4.1E-15 82.0 3.4 48 229-287 3-51 (68)
44 2l0b_A E3 ubiquitin-protein li 99.0 1.9E-10 6.4E-15 86.1 3.7 49 229-288 38-89 (91)
45 2yu4_A E3 SUMO-protein ligase 99.0 2.8E-10 9.6E-15 85.7 4.5 52 229-285 5-59 (94)
46 2f42_A STIP1 homology and U-bo 99.0 2.1E-10 7.3E-15 96.2 4.0 50 229-288 104-153 (179)
47 2ep4_A Ring finger protein 24; 99.0 2.7E-10 9.1E-15 81.6 4.0 50 227-287 11-63 (74)
48 1x4j_A Ring finger protein 38; 99.0 2.5E-10 8.5E-15 82.1 3.8 49 229-288 21-72 (75)
49 3hcs_A TNF receptor-associated 99.0 2.8E-10 9.7E-15 94.7 3.7 52 227-288 14-65 (170)
50 2ecg_A Baculoviral IAP repeat- 98.9 2E-10 6.8E-15 82.8 1.9 47 227-288 21-68 (75)
51 4ic3_A E3 ubiquitin-protein li 98.9 3.2E-10 1.1E-14 81.5 2.6 47 227-288 20-67 (74)
52 4ap4_A E3 ubiquitin ligase RNF 98.9 4.2E-10 1.4E-14 89.1 2.7 49 229-288 5-60 (133)
53 1v87_A Deltex protein 2; ring- 98.9 1.2E-09 4E-14 84.8 4.2 52 230-287 24-93 (114)
54 3htk_C E3 SUMO-protein ligase 98.8 1.9E-09 6.5E-14 95.0 3.7 50 229-287 179-231 (267)
55 2vje_A E3 ubiquitin-protein li 98.8 2.8E-09 9.6E-14 74.4 3.6 48 229-287 6-56 (64)
56 2y1n_A E3 ubiquitin-protein li 98.8 2.4E-09 8.3E-14 99.7 4.1 49 230-288 331-379 (389)
57 2yho_A E3 ubiquitin-protein li 98.8 2.8E-09 9.6E-14 77.6 2.6 45 228-287 15-60 (79)
58 2ecl_A Ring-box protein 2; RNF 98.7 7.1E-09 2.4E-13 75.7 4.3 47 230-287 14-75 (81)
59 2ea5_A Cell growth regulator w 98.7 9E-09 3.1E-13 72.7 4.7 45 229-288 13-58 (68)
60 2vje_B MDM4 protein; proto-onc 98.7 6.2E-09 2.1E-13 72.4 3.5 47 230-287 6-55 (63)
61 4ap4_A E3 ubiquitin ligase RNF 98.7 4.5E-09 1.6E-13 83.1 1.6 50 229-289 70-126 (133)
62 1wim_A KIAA0161 protein; ring 98.6 1E-08 3.5E-13 76.9 2.6 53 230-285 4-61 (94)
63 3t6p_A Baculoviral IAP repeat- 98.6 9.5E-09 3.2E-13 94.8 1.3 47 227-288 291-338 (345)
64 3dpl_R Ring-box protein 1; ubi 98.6 4.6E-08 1.6E-12 75.2 4.6 46 230-286 36-99 (106)
65 2bay_A PRE-mRNA splicing facto 98.4 8.6E-08 3E-12 66.2 2.4 46 231-287 3-49 (61)
66 4a0k_B E3 ubiquitin-protein li 98.2 2E-07 6.9E-12 72.7 0.2 46 230-286 47-110 (117)
67 2d8s_A Cellular modulator of i 98.1 1.3E-06 4.5E-11 63.5 3.6 49 230-287 14-69 (80)
68 2ct0_A Non-SMC element 1 homol 97.7 4.2E-05 1.4E-09 54.6 5.0 49 230-287 14-63 (74)
69 3vk6_A E3 ubiquitin-protein li 97.6 3.2E-05 1.1E-09 57.8 3.4 45 233-287 3-48 (101)
70 3k1l_B Fancl; UBC, ring, RWD, 97.4 5.5E-05 1.9E-09 69.0 2.6 60 229-288 306-373 (381)
71 1vyx_A ORF K3, K3RING; zinc-bi 97.3 0.00011 3.7E-09 50.2 2.6 49 230-287 5-58 (60)
72 2jun_A Midline-1; B-BOX, TRIM, 96.0 0.0028 9.6E-08 47.3 2.4 31 230-260 2-35 (101)
73 3nw0_A Non-structural maintena 94.7 0.031 1E-06 48.6 4.7 48 231-287 180-228 (238)
74 2cs3_A Protein C14ORF4, MY039 91.2 0.4 1.4E-05 34.1 5.2 33 230-262 14-50 (93)
75 3m62_A Ubiquitin conjugation f 86.9 0.53 1.8E-05 48.4 4.7 48 229-287 889-937 (968)
76 2ko5_A Ring finger protein Z; 82.0 1.4 4.8E-05 32.3 3.7 47 229-288 26-73 (99)
77 3i2d_A E3 SUMO-protein ligase 81.6 1.1 3.6E-05 41.2 3.7 52 229-287 247-299 (371)
78 4fo9_A E3 SUMO-protein ligase 80.8 1.2 4E-05 40.8 3.7 52 229-287 213-265 (360)
79 2lbm_A Transcriptional regulat 56.9 8.2 0.00028 30.4 3.3 53 230-284 62-116 (142)
80 3ql9_A Transcriptional regulat 55.1 9.2 0.00031 29.6 3.2 55 230-284 56-110 (129)
81 2lri_C Autoimmune regulator; Z 53.8 18 0.00062 24.4 4.2 49 230-287 11-61 (66)
82 1joc_A EEA1, early endosomal a 50.9 6.8 0.00023 30.1 1.9 31 230-260 68-102 (125)
83 3mjh_B Early endosome antigen 50.9 2.9 0.0001 24.7 -0.2 17 230-246 4-20 (34)
84 2gmg_A Hypothetical protein PF 50.1 5.7 0.00019 29.7 1.2 27 243-285 67-93 (105)
85 1weo_A Cellulose synthase, cat 49.6 25 0.00086 25.3 4.5 48 230-287 15-69 (93)
86 1vfy_A Phosphatidylinositol-3- 48.5 9.4 0.00032 26.2 2.1 30 231-260 11-44 (73)
87 2xqn_T Testin, TESS; metal-bin 48.2 16 0.00054 27.4 3.6 46 230-288 29-75 (126)
88 2k16_A Transcription initiatio 45.9 11 0.00038 25.8 2.2 51 230-287 17-70 (75)
89 3t7l_A Zinc finger FYVE domain 44.4 14 0.00047 26.5 2.6 32 230-261 19-54 (90)
90 2yw8_A RUN and FYVE domain-con 44.0 10 0.00036 26.6 1.8 31 230-260 18-52 (82)
91 2jne_A Hypothetical protein YF 43.6 2.4 8.3E-05 31.2 -1.6 41 231-287 32-72 (101)
92 1z2q_A LM5-1; membrane protein 43.0 11 0.00037 26.6 1.8 31 230-260 20-54 (84)
93 1dvp_A HRS, hepatocyte growth 41.6 9.3 0.00032 32.1 1.5 31 230-260 160-194 (220)
94 1x4u_A Zinc finger, FYVE domai 41.4 11 0.00037 26.7 1.5 31 230-260 13-47 (84)
95 2fiy_A Protein FDHE homolog; F 38.7 4.6 0.00016 36.1 -1.0 45 230-285 181-231 (309)
96 1m3v_A FLIN4, fusion of the LI 38.0 20 0.00069 26.8 2.7 48 230-288 31-81 (122)
97 1y02_A CARP2, FYVE-ring finger 36.6 12 0.0004 28.6 1.1 30 230-259 18-51 (120)
98 2d8v_A Zinc finger FYVE domain 36.0 15 0.0005 25.0 1.4 31 230-262 7-39 (67)
99 4ayb_P DNA-directed RNA polyme 35.7 5.6 0.00019 25.2 -0.7 12 275-286 22-33 (48)
100 1wfk_A Zinc finger, FYVE domai 35.6 14 0.00047 26.5 1.3 31 230-260 8-42 (88)
101 3zyq_A Hepatocyte growth facto 34.6 15 0.00051 31.0 1.6 31 230-260 163-197 (226)
102 1z60_A TFIIH basal transcripti 34.3 37 0.0013 22.4 3.2 40 232-282 16-58 (59)
103 2jtn_A LIM domain-binding prot 33.5 32 0.0011 27.6 3.5 31 230-260 86-116 (182)
104 2l5u_A Chromodomain-helicase-D 31.9 53 0.0018 21.4 3.7 47 229-284 9-57 (61)
105 1wd2_A Ariadne-1 protein homol 31.2 6 0.00021 26.3 -1.1 30 232-261 7-44 (60)
106 2rgt_A Fusion of LIM/homeobox 31.1 37 0.0013 26.8 3.4 32 230-261 32-63 (169)
107 2lv9_A Histone-lysine N-methyl 31.1 27 0.00092 25.4 2.3 46 230-284 27-75 (98)
108 4g9i_A Hydrogenase maturation 31.0 15 0.00052 37.0 1.2 52 230-284 105-186 (772)
109 3mpx_A FYVE, rhogef and PH dom 30.1 11 0.00037 34.7 0.0 54 230-287 374-431 (434)
110 3ttc_A HYPF, transcriptional r 29.7 17 0.00058 35.9 1.3 52 230-284 16-97 (657)
111 2cup_A Skeletal muscle LIM-pro 29.6 33 0.0011 24.4 2.6 45 230-287 32-77 (101)
112 2xjy_A Rhombotin-2; oncoprotei 29.3 43 0.0015 25.0 3.4 47 230-287 28-77 (131)
113 2ku3_A Bromodomain-containing 29.1 55 0.0019 22.2 3.5 48 229-285 14-66 (71)
114 1x64_A Alpha-actinin-2 associa 29.0 79 0.0027 21.8 4.6 30 231-260 51-81 (89)
115 2pv0_B DNA (cytosine-5)-methyl 28.3 27 0.00092 32.1 2.3 52 230-283 92-146 (386)
116 3vth_A Hydrogenase maturation 26.9 19 0.00067 36.1 1.2 52 230-284 110-191 (761)
117 2l43_A N-teminal domain from h 26.5 53 0.0018 23.3 3.2 49 229-286 23-76 (88)
118 1zbd_B Rabphilin-3A; G protein 26.1 21 0.0007 27.7 1.0 48 230-284 54-106 (134)
119 2jrp_A Putative cytoplasmic pr 25.8 4.3 0.00015 28.9 -2.8 10 232-241 3-12 (81)
120 1wen_A Inhibitor of growth fam 25.5 1.2E+02 0.004 20.5 4.7 48 230-287 15-67 (71)
121 1f62_A Transcription factor WS 25.3 50 0.0017 20.5 2.6 46 233-285 2-50 (51)
122 3vhs_A ATPase wrnip1; zinc fin 25.1 15 0.00051 20.0 -0.0 13 230-242 5-17 (29)
123 1l8d_A DNA double-strand break 24.7 14 0.00048 27.3 -0.2 10 277-286 48-57 (112)
124 2zet_C Melanophilin; complex, 24.2 38 0.0013 26.9 2.2 45 230-284 67-116 (153)
125 1x62_A C-terminal LIM domain p 23.6 62 0.0021 21.8 3.1 29 232-260 42-71 (79)
126 3a1b_A DNA (cytosine-5)-methyl 23.6 40 0.0014 27.0 2.2 51 230-283 78-132 (159)
127 1weu_A Inhibitor of growth fam 22.9 1.1E+02 0.0039 21.8 4.4 48 229-287 34-87 (91)
128 1wil_A KIAA1045 protein; ring 22.9 89 0.003 22.3 3.6 32 229-261 13-47 (89)
129 2jmo_A Parkin; IBR, E3 ligase, 22.8 20 0.00068 25.0 0.2 14 248-261 55-68 (80)
130 1erd_A Pheromone ER-2; NMR {Eu 21.6 21 0.00072 20.8 0.2 14 247-260 10-23 (40)
131 1rut_X Flinc4, fusion protein 21.6 30 0.001 27.9 1.2 47 230-287 31-80 (188)
132 2cor_A Pinch protein; LIM doma 21.4 1E+02 0.0035 20.8 3.8 31 230-260 40-70 (79)
133 1nyp_A Pinch protein; LIM doma 20.7 59 0.002 20.9 2.3 10 233-242 7-16 (66)
134 2o35_A Hypothetical protein DU 20.7 50 0.0017 24.3 2.0 16 252-267 42-57 (105)
135 2ct7_A Ring finger protein 31; 20.3 30 0.001 24.3 0.8 14 248-261 48-61 (86)
136 1mm2_A MI2-beta; PHD, zinc fin 20.2 42 0.0014 22.0 1.5 48 230-286 8-57 (61)
137 2d8x_A Protein pinch; LIM doma 20.1 50 0.0017 21.6 1.9 13 249-261 50-62 (70)
No 1
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=2.6e-12 Score=91.86 Aligned_cols=54 Identities=31% Similarity=0.848 Sum_probs=45.5
Q ss_pred ccccccccccccCCCCCcEeccCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccccccC
Q 022989 227 KLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELAG 288 (289)
Q Consensus 227 ~~~~~~~C~IC~~~~~~p~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 288 (289)
.+.+.+.|+||++.+.+|+.++|||.||..|+..|+. .......||+||..+..
T Consensus 16 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~--------~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGE--------TSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCS--------SSCSCCCCSSSCCCCCC
T ss_pred hCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHH--------cCCCCCCCCCCCCcCCc
Confidence 4567899999999999999999999999999998841 12356789999998865
No 2
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.30 E-value=1.6e-12 Score=94.38 Aligned_cols=51 Identities=20% Similarity=0.385 Sum_probs=44.2
Q ss_pred cccccccccccCCCCCcEeccCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccccccC
Q 022989 228 LEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELAG 288 (289)
Q Consensus 228 ~~~~~~C~IC~~~~~~p~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 288 (289)
+.+.+.||||++++.+|++++|||+||..|+..|+. .+...||.||..+..
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~----------~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLD----------AGHKTCPKSQETLLH 55 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHT----------TTCCBCTTTCCBCSS
T ss_pred CcccCCCCCccccccCCEEcCCCCeecHHHHHHHHH----------HCcCCCCCCcCCCCh
Confidence 357899999999999999999999999999999852 246789999998753
No 3
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.7e-12 Score=91.19 Aligned_cols=52 Identities=31% Similarity=0.747 Sum_probs=44.8
Q ss_pred cccccccccccCCCCCcEeccCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccccccCC
Q 022989 228 LEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELAGN 289 (289)
Q Consensus 228 ~~~~~~C~IC~~~~~~p~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~~~ 289 (289)
+.+.+.|+||++.+.+|+.++|||+||..|+..|+. .....||+||..+..+
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLS----------SSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHT----------TSSCCCTTTCCCCCTT
T ss_pred CCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHH----------hCcCCCCCCCcCCChh
Confidence 457899999999999999999999999999999852 3457899999998653
No 4
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.29 E-value=2.1e-12 Score=92.99 Aligned_cols=51 Identities=25% Similarity=0.724 Sum_probs=43.5
Q ss_pred ccccccccccccCCCCCcEecc-CCCcccHHhHHHhhhhHhHhcccCCCCCCccccccccc
Q 022989 227 KLEYDLTCAVCLDLVFNPYALS-CGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREEL 286 (289)
Q Consensus 227 ~~~~~~~C~IC~~~~~~p~~l~-CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~ 286 (289)
.+.+.+.|+||++.+.+|++++ |||+||..||..|+.. .+...||+||..+
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~---------~~~~~CP~Cr~~~ 62 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLE---------SDEHTCPTCHQND 62 (74)
T ss_dssp CSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHH---------SSSSCCSSSCCSS
T ss_pred cCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHh---------cCCCcCCCCCCcC
Confidence 4467899999999999999999 9999999999998631 2347899999975
No 5
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=2.8e-12 Score=91.78 Aligned_cols=52 Identities=23% Similarity=0.598 Sum_probs=44.4
Q ss_pred cccccccccccccCCCCCcEec-cCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccccccC
Q 022989 226 IKLEYDLTCAVCLDLVFNPYAL-SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELAG 288 (289)
Q Consensus 226 ~~~~~~~~C~IC~~~~~~p~~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 288 (289)
..+++.+.|+||++.+.+|+++ +|||+||..|+..|+. ....||+||..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~-----------~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFY-----------YSNRCPKCNIVVHQ 62 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHH-----------HCSSCTTTCCCCCS
T ss_pred hhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHH-----------cCCcCCCcCcccCc
Confidence 3456789999999999999996 9999999999999853 24689999998864
No 6
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.28 E-value=1.9e-12 Score=96.89 Aligned_cols=51 Identities=25% Similarity=0.736 Sum_probs=43.7
Q ss_pred ccccccccccccCCCCCcEecc-CCCcccHHhHHHhhhhHhHhcccCCCCCCccccccccc
Q 022989 227 KLEYDLTCAVCLDLVFNPYALS-CGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREEL 286 (289)
Q Consensus 227 ~~~~~~~C~IC~~~~~~p~~l~-CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~ 286 (289)
.+.+.+.|+||++.+.+|++++ |||+||..|+..|+. ..+...||+||..+
T Consensus 9 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~---------~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALL---------ESDEHTCPTCHQND 60 (92)
T ss_dssp CCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHH---------HCTTCCCTTTCCSS
T ss_pred cCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHH---------hcCCCcCcCCCCcC
Confidence 3467899999999999999999 999999999999863 12447899999986
No 7
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.28 E-value=6.4e-12 Score=92.14 Aligned_cols=58 Identities=26% Similarity=0.696 Sum_probs=46.5
Q ss_pred cccccccccccccCCCCCcEeccCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccccccC
Q 022989 226 IKLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELAG 288 (289)
Q Consensus 226 ~~~~~~~~C~IC~~~~~~p~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 288 (289)
..+.+.+.|+||++.+.+|+.++|||+||..|+..|+.. .........||.||..+..
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-----~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYES-----NRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHH-----SBCTTSCBCCTTTCCCCCT
T ss_pred HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHh-----ccCCCCCCCCCCCCCcCCH
Confidence 345678999999999999999999999999999998631 1112346889999998764
No 8
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.27 E-value=1.5e-12 Score=105.11 Aligned_cols=48 Identities=31% Similarity=0.871 Sum_probs=42.3
Q ss_pred ccccccccccCCCCCcEeccCCCcccHHhHHHhhhhHhHhcccCCCCCCcccccccccc
Q 022989 229 EYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELA 287 (289)
Q Consensus 229 ~~~~~C~IC~~~~~~p~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 287 (289)
++++.|+||++.+.+|++++|||+||..|+..|+ .....||+||.++.
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~-----------~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWM-----------KRKIECPICRKDIK 98 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHT-----------TTCSBCTTTCCBCC
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHH-----------HcCCcCCCCCCcCC
Confidence 3578999999999999999999999999999884 34578999999875
No 9
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.25 E-value=2.2e-12 Score=102.14 Aligned_cols=51 Identities=33% Similarity=0.725 Sum_probs=44.2
Q ss_pred cccccccccccCCCCCcEeccCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccccccC
Q 022989 228 LEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELAG 288 (289)
Q Consensus 228 ~~~~~~C~IC~~~~~~p~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 288 (289)
+.+.+.|+||++.+.+|++++|||+||..|+..|+. .....||+||..+..
T Consensus 49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFR----------AQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHH----------TTCCBCTTTCCBCCT
T ss_pred CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHh----------HCcCCCCCCCccCCC
Confidence 457799999999999999999999999999999853 345689999998854
No 10
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.24 E-value=2.1e-12 Score=98.55 Aligned_cols=53 Identities=21% Similarity=0.493 Sum_probs=45.1
Q ss_pred cccccccccccccCCCCCcEe-ccCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccccccC
Q 022989 226 IKLEYDLTCAVCLDLVFNPYA-LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELAG 288 (289)
Q Consensus 226 ~~~~~~~~C~IC~~~~~~p~~-l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 288 (289)
..+.+.+.|+||++.+.+|+. ++|||+||..||..|+.. ....||.||.++..
T Consensus 17 ~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~----------~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 17 ESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTE----------QRAQCPHCRAPLQL 70 (100)
T ss_dssp HHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHH----------TCSBCTTTCCBCCG
T ss_pred ccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHH----------CcCCCCCCCCcCCH
Confidence 345688999999999999999 999999999999999641 22789999998754
No 11
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.24 E-value=3.4e-12 Score=92.66 Aligned_cols=58 Identities=29% Similarity=0.783 Sum_probs=45.0
Q ss_pred ccccccccccccCCCCCcEeccCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccccccC
Q 022989 227 KLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELAG 288 (289)
Q Consensus 227 ~~~~~~~C~IC~~~~~~p~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 288 (289)
.+.+.+.|+||++.+.+|++++|||+||..|+..|+.. ..........||.||..+..
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~----~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKE----AVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCC----CSSSCCCCCCCSSSCCCCCS
T ss_pred hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHh----cccCCCCCCcCCCCCCcCCH
Confidence 34678999999999999999999999999999887420 00011236789999998753
No 12
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=7.6e-12 Score=91.51 Aligned_cols=48 Identities=29% Similarity=0.714 Sum_probs=42.3
Q ss_pred ccccccccccCCCCCcEeccCCCcccHHhHHHhhhhHhHhcccCCCCCCcccccccccc
Q 022989 229 EYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELA 287 (289)
Q Consensus 229 ~~~~~C~IC~~~~~~p~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 287 (289)
.+.+.|+||++.+.+|++++|||+||..|+..|+. ....||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~-----------~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFR-----------ATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHH-----------HCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHH-----------CCCcCCCcCcccc
Confidence 46799999999999999999999999999999853 2468999999864
No 13
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=8.5e-12 Score=88.96 Aligned_cols=48 Identities=35% Similarity=0.855 Sum_probs=42.2
Q ss_pred ccccccccccCCCCCcEeccCCCcccHHhHHHhhhhHhHhcccCCCCCCcccccccccc
Q 022989 229 EYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELA 287 (289)
Q Consensus 229 ~~~~~C~IC~~~~~~p~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 287 (289)
.+.+.|+||++.+.+|+.++|||.||..|+..|+ .....||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~-----------~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGAS-----------WLGKRCALCRQEIP 60 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCT-----------TCSSBCSSSCCBCC
T ss_pred CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHH-----------HCCCcCcCcCchhC
Confidence 4678999999999999999999999999998874 23478999999875
No 14
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=9.3e-12 Score=91.26 Aligned_cols=57 Identities=32% Similarity=0.860 Sum_probs=46.0
Q ss_pred ccccccccccccCCCCCcEeccCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccccccC
Q 022989 227 KLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELAG 288 (289)
Q Consensus 227 ~~~~~~~C~IC~~~~~~p~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 288 (289)
.+.+.+.|+||++.+.+|+.++|||+||..|+..|+..... ......||.||..+..
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~-----~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSML-----DKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHH-----TTSCCCCTTTCCSSCS
T ss_pred HccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhc-----CCCCCcCCCCCCccCH
Confidence 45678999999999999999999999999999998642111 1246889999998764
No 15
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.3e-11 Score=91.23 Aligned_cols=54 Identities=26% Similarity=0.643 Sum_probs=44.8
Q ss_pred ccccccccccccCCCCC----cEeccCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccccccC
Q 022989 227 KLEYDLTCAVCLDLVFN----PYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELAG 288 (289)
Q Consensus 227 ~~~~~~~C~IC~~~~~~----p~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 288 (289)
.+.+.+.|+||++.+.+ |+.++|||+||..|+..|+.. ......||.||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~--------~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLAS--------SINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHH--------CSSCBCCTTTCCCBCC
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHc--------CCCCcCCCCCCCcccc
Confidence 34678999999999998 999999999999999998631 1245789999998753
No 16
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.18 E-value=1.3e-11 Score=91.34 Aligned_cols=48 Identities=15% Similarity=0.164 Sum_probs=42.7
Q ss_pred ccccccccccCCCCCcEeccCCCcccHHhHHHhhhhHhHhcccCCCCCCcccccccccc
Q 022989 229 EYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELA 287 (289)
Q Consensus 229 ~~~~~C~IC~~~~~~p~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 287 (289)
.+.+.||||++++.+|++++|||+||..||..|+. ....||.||.++.
T Consensus 12 p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~-----------~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLL-----------NSPTDPFNRQMLT 59 (85)
T ss_dssp CTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHH-----------HCSBCTTTCCBCC
T ss_pred chheECcccCchhcCCeECCCCCEECHHHHHHHHh-----------cCCCCCCCcCCCC
Confidence 47899999999999999999999999999999963 2468999999875
No 17
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.18 E-value=3.1e-11 Score=92.08 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=43.3
Q ss_pred ccccccccccCCCCCcEeccCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccccccC
Q 022989 229 EYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELAG 288 (289)
Q Consensus 229 ~~~~~C~IC~~~~~~p~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 288 (289)
.+.+.||||++++.+|++++|||+||..||..|+. ....||.||.++..
T Consensus 27 p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~-----------~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLL-----------NSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTT-----------SCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccCCeECCCCCEEchHHHHHHHH-----------cCCCCCCCCCCCCh
Confidence 47899999999999999999999999999999852 35789999998753
No 18
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=2e-11 Score=84.81 Aligned_cols=48 Identities=35% Similarity=0.915 Sum_probs=40.6
Q ss_pred ccccccccccccCCCCCcEeccCCCcccHHhHHHhhhhHhHhcccCCCCCCccccc
Q 022989 227 KLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPIC 282 (289)
Q Consensus 227 ~~~~~~~C~IC~~~~~~p~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~C 282 (289)
.+.+.+.|+||++.+.+|+.++|||+||..|+.+|+. . ......||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~-----~---~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGE-----T---SCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHH-----H---CSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHH-----c---CCCCCcCcCC
Confidence 4567899999999999999999999999999999853 1 1345789998
No 19
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.17 E-value=4.9e-12 Score=98.71 Aligned_cols=50 Identities=28% Similarity=0.803 Sum_probs=42.9
Q ss_pred cccccccccccCCCCCcEeccCCCcccHHhHHHhhhhHhHhcccCCCCCCcccccccccc
Q 022989 228 LEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELA 287 (289)
Q Consensus 228 ~~~~~~C~IC~~~~~~p~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 287 (289)
+.+++.|+||++.+.+|++++|||+||..|+..|+. .+...||.||..+.
T Consensus 12 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 12 SLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVE----------KASLCCPFCRRRVS 61 (115)
T ss_dssp CHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCC----------TTTSBCTTTCCBCH
T ss_pred CCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHh----------HCcCCCCCCCcccC
Confidence 457899999999999999999999999999987731 24578999999874
No 20
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.17 E-value=1e-11 Score=101.74 Aligned_cols=51 Identities=33% Similarity=0.747 Sum_probs=44.1
Q ss_pred cccccccccccCCCCCcEeccCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccccccC
Q 022989 228 LEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELAG 288 (289)
Q Consensus 228 ~~~~~~C~IC~~~~~~p~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 288 (289)
+.+.+.|+||++.+.+|++++|||+||..|+..|+. .....||+||..+..
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFK----------AQVFSCPACRHDLGQ 125 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHH----------TTCCBCTTTCCBCCT
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHH----------hCCCcCCCCCccCCC
Confidence 456799999999999999999999999999999853 244689999998764
No 21
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.17 E-value=1.5e-11 Score=94.93 Aligned_cols=51 Identities=27% Similarity=0.680 Sum_probs=44.1
Q ss_pred ccccccccccccCCCCCcEec-cCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccccccC
Q 022989 227 KLEYDLTCAVCLDLVFNPYAL-SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELAG 288 (289)
Q Consensus 227 ~~~~~~~C~IC~~~~~~p~~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 288 (289)
.+.+.+.|+||++.+.+|+++ +|||+||..|+..|+. ....||.||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~-----------~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLE-----------TSKYCPICDVQVHK 62 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHT-----------SCSBCTTTCCBSCS
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHH-----------hCCcCcCCCccccc
Confidence 456789999999999999997 9999999999999852 34789999998753
No 22
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.16 E-value=1.4e-11 Score=86.27 Aligned_cols=50 Identities=28% Similarity=0.568 Sum_probs=41.4
Q ss_pred cccccccccC-CCCCc----EeccCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccccccCC
Q 022989 230 YDLTCAVCLD-LVFNP----YALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELAGN 289 (289)
Q Consensus 230 ~~~~C~IC~~-~~~~p----~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~~~ 289 (289)
+++.||||++ .+.+| +.++|||+||..|+.+|+. .+...||.||..+..+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV----------RGAGNCPECGTPLRKS 56 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHH----------TTSSSCTTTCCCCSSC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHH----------cCCCcCCCCCCccccc
Confidence 4688999999 88888 4689999999999998852 2357899999988653
No 23
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.16 E-value=3.9e-11 Score=91.22 Aligned_cols=50 Identities=14% Similarity=0.107 Sum_probs=43.5
Q ss_pred cccccccccccCCCCCcEeccCC-CcccHHhHHHhhhhHhHhcccCCCCCCccccccccccC
Q 022989 228 LEYDLTCAVCLDLVFNPYALSCG-HLFCKLCACSAASVMVFEGLKSASPDSKCPICREELAG 288 (289)
Q Consensus 228 ~~~~~~C~IC~~~~~~p~~l~Cg-H~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 288 (289)
+.+.+.||||++++.+||+++|| |+||..||..|+. ....||.||.++..
T Consensus 19 ~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~-----------~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLL-----------SDQTDPFNRSPLTM 69 (98)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTT-----------TSCBCTTTCSBCCT
T ss_pred CcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHH-----------hCCCCCCCCCCCCh
Confidence 35789999999999999999999 9999999999852 24689999998753
No 24
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.16 E-value=1.2e-11 Score=93.96 Aligned_cols=52 Identities=23% Similarity=0.635 Sum_probs=44.0
Q ss_pred cccccccccccccCCCCCcEec-cCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccccccC
Q 022989 226 IKLEYDLTCAVCLDLVFNPYAL-SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELAG 288 (289)
Q Consensus 226 ~~~~~~~~C~IC~~~~~~p~~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 288 (289)
..+.+.+.|+||++.+.+|+.+ +|||+||..|+..|+. ....||.||..+..
T Consensus 17 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~-----------~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 17 KTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLS-----------YKTQCPTCCVTVTE 69 (99)
T ss_dssp HHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHT-----------TCCBCTTTCCBCCG
T ss_pred HhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHH-----------CCCCCCCCCCcCCh
Confidence 3446789999999999999987 8999999999999852 34789999998753
No 25
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=4.1e-11 Score=81.60 Aligned_cols=48 Identities=35% Similarity=0.895 Sum_probs=40.2
Q ss_pred ccccccccccccCCCCCcEeccCCCcccHHhHHHhhhhHhHhcccCCCCCCccccc
Q 022989 227 KLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPIC 282 (289)
Q Consensus 227 ~~~~~~~C~IC~~~~~~p~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~C 282 (289)
.+.+.+.|+||++.+.+|+.++|||+||..|+..|+. .......||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~--------~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWE--------DLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTT--------SSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHH--------hcCCCCCCCCC
Confidence 3457899999999999999999999999999998842 12356789998
No 26
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=1.5e-11 Score=86.65 Aligned_cols=50 Identities=26% Similarity=0.730 Sum_probs=42.8
Q ss_pred cccccccccccCCCCCc-------EeccCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccccccC
Q 022989 228 LEYDLTCAVCLDLVFNP-------YALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELAG 288 (289)
Q Consensus 228 ~~~~~~C~IC~~~~~~p-------~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 288 (289)
+.+...|+||++.+.+| +.++|||.||..|+..|+. ....||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-----------~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-----------NANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHH-----------HCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHH-----------cCCCCCCCCCccCc
Confidence 35789999999999887 7899999999999999853 24689999998865
No 27
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.14 E-value=1.2e-11 Score=87.79 Aligned_cols=49 Identities=27% Similarity=0.760 Sum_probs=42.2
Q ss_pred ccccccccccCCCCCc-------EeccCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccccccC
Q 022989 229 EYDLTCAVCLDLVFNP-------YALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELAG 288 (289)
Q Consensus 229 ~~~~~C~IC~~~~~~p-------~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 288 (289)
.+...|+||++.+.+| +.++|||.||..|+.+|+. ....||+||..+..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-----------~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-----------NANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHH-----------HCSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHH-----------cCCCCCCCCCccCh
Confidence 4679999999999888 7899999999999999853 23689999998864
No 28
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.13 E-value=1.4e-11 Score=95.30 Aligned_cols=53 Identities=30% Similarity=0.892 Sum_probs=44.1
Q ss_pred cccccccccccCCCCCcEeccCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccccccC
Q 022989 228 LEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELAG 288 (289)
Q Consensus 228 ~~~~~~C~IC~~~~~~p~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 288 (289)
+.+.+.|+||++.+.+|+.++|||+||..|+..|+. ...+...||.||..+..
T Consensus 18 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~--------~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 18 MQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLN--------QKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHH--------SSSSSCCCTTTSCCCCT
T ss_pred ccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHH--------hCCCCCCCcCCCCcCCH
Confidence 356789999999999999999999999999999853 11244689999998764
No 29
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.12 E-value=2.8e-11 Score=94.90 Aligned_cols=52 Identities=33% Similarity=0.690 Sum_probs=44.1
Q ss_pred ccccccccccccCCCCCcEeccCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccccccC
Q 022989 227 KLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELAG 288 (289)
Q Consensus 227 ~~~~~~~C~IC~~~~~~p~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 288 (289)
.+.+.+.|+||++.+.+|+.++|||+||..|+..|+. .....||+||..+..
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIR----------DAGHKCPVDNEILLE 65 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHH----------HHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHh----------hCCCCCCCCCCCcCH
Confidence 4567899999999999999999999999999999863 122389999998764
No 30
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.10 E-value=5.9e-11 Score=86.42 Aligned_cols=51 Identities=22% Similarity=0.637 Sum_probs=40.0
Q ss_pred cccccccccccCCCC--CcEecc--CCCcccHHhHHHhhhhHhHhcccCCCCCCccccccccccC
Q 022989 228 LEYDLTCAVCLDLVF--NPYALS--CGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELAG 288 (289)
Q Consensus 228 ~~~~~~C~IC~~~~~--~p~~l~--CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 288 (289)
+++++.||||++.+. ++..++ |||+||..|+..++. .....||.||.++..
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~----------~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRT----------DENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTT----------SSCSBCTTTCCBCSS
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHh----------cCCCCCCCCCCccCC
Confidence 467899999999774 445555 999999999987631 246789999998864
No 31
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.10 E-value=2.6e-11 Score=82.51 Aligned_cols=45 Identities=29% Similarity=0.587 Sum_probs=39.2
Q ss_pred ccccccccccCCCCCcEeccCCCcccHHhHHHhhhhHhHhcccCCCCCCcccccccccc
Q 022989 229 EYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELA 287 (289)
Q Consensus 229 ~~~~~C~IC~~~~~~p~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 287 (289)
.+.+.|+||++.+.+|+.++|||+||..|+.. ....||+||+.+.
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~--------------~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA--------------SGMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS--------------SSSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHcc--------------CCCCCCcCCcEee
Confidence 36789999999999999999999999999832 3568999999875
No 32
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.09 E-value=2.9e-11 Score=97.94 Aligned_cols=50 Identities=34% Similarity=0.793 Sum_probs=43.2
Q ss_pred ccccccccccccCCCCCcEeccCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccccc
Q 022989 227 KLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREEL 286 (289)
Q Consensus 227 ~~~~~~~C~IC~~~~~~p~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~ 286 (289)
.+++.+.|+||++++.+|++++|||+||..||..|+. .....||+||.++
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~----------~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILS----------SGPQNCAACVHEG 76 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGG----------GSCEECHHHHHTT
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHh----------cCCCCCCCCCCcc
Confidence 4568899999999999999999999999999999852 2346899999864
No 33
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=5.6e-11 Score=84.24 Aligned_cols=49 Identities=33% Similarity=0.815 Sum_probs=42.2
Q ss_pred cccccccccccCCCCCcEeccCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccccccC
Q 022989 228 LEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELAG 288 (289)
Q Consensus 228 ~~~~~~C~IC~~~~~~p~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 288 (289)
+.+...|+||++.+.+ +.++|||.||..|+..|+ .....||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~-----------~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWS-----------DRHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSS-----------CCCSSCHHHHHCTTC
T ss_pred CCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHH-----------HCcCcCCCcCCcccC
Confidence 4568999999999998 889999999999998873 356889999988753
No 34
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.08 E-value=4.1e-11 Score=93.59 Aligned_cols=52 Identities=29% Similarity=0.726 Sum_probs=44.1
Q ss_pred ccccccccccccCCCCCcEeccCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccccccC
Q 022989 227 KLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELAG 288 (289)
Q Consensus 227 ~~~~~~~C~IC~~~~~~p~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 288 (289)
.+.+.+.|+||++.+.+|+.++|||+||..|+..|+. .....||+||.++..
T Consensus 19 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLK----------VMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHH----------HTCSBCTTTCCBCCG
T ss_pred hccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHh----------HCcCcCCCCCCCCCH
Confidence 3457899999999999999999999999999999863 124689999998753
No 35
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.07 E-value=1.7e-11 Score=96.01 Aligned_cols=50 Identities=30% Similarity=0.738 Sum_probs=43.0
Q ss_pred cccccccccccccCCCCCcEec-cCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccccccC
Q 022989 226 IKLEYDLTCAVCLDLVFNPYAL-SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELAG 288 (289)
Q Consensus 226 ~~~~~~~~C~IC~~~~~~p~~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 288 (289)
..+.+.+.|+||++.+.+|+++ +|||+||..|+..|+ . ..||+||..+..
T Consensus 17 ~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~-----------~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 17 DRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCI-----------G--TGCPVCYTPAWI 67 (117)
T ss_dssp HHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGT-----------T--TBCSSSCCBCSC
T ss_pred HhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHh-----------c--CCCcCCCCcCcc
Confidence 3456889999999999999998 999999999998773 1 689999988753
No 36
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.06 E-value=5.7e-11 Score=98.53 Aligned_cols=51 Identities=37% Similarity=0.854 Sum_probs=43.6
Q ss_pred ccccccccccccCCCCCcEec-cCCCcccHHhHHHhhhhHhHhcccCCCCCCcccccccccc
Q 022989 227 KLEYDLTCAVCLDLVFNPYAL-SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELA 287 (289)
Q Consensus 227 ~~~~~~~C~IC~~~~~~p~~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 287 (289)
.+.+.+.|+||++.+.+|+.+ +|||+||..|+..|+. .+...||+||..+.
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALR----------SGNKECPTCRKKLV 101 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHH----------TTCCBCTTTCCBCC
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHH----------hCcCCCCCCCCcCC
Confidence 345789999999999999987 9999999999999863 23578999999874
No 37
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.06 E-value=3.6e-11 Score=83.40 Aligned_cols=48 Identities=27% Similarity=0.767 Sum_probs=41.0
Q ss_pred cccccccccCCCCCc-------EeccCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccccccC
Q 022989 230 YDLTCAVCLDLVFNP-------YALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELAG 288 (289)
Q Consensus 230 ~~~~C~IC~~~~~~p-------~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 288 (289)
+...|+||++.+.+| +.++|||.||..|+.+|+. ....||+||..+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-----------~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-----------NANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHH-----------HCSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHH-----------cCCCCCCCCccCCc
Confidence 468999999999887 7799999999999999853 24689999998864
No 38
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.06 E-value=1.2e-10 Score=78.51 Aligned_cols=48 Identities=33% Similarity=0.674 Sum_probs=40.3
Q ss_pred ccccccccccCCCCC---cEecc-CCCcccHHhHHHhhhhHhHhcccCCCCCCcccccccccc
Q 022989 229 EYDLTCAVCLDLVFN---PYALS-CGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELA 287 (289)
Q Consensus 229 ~~~~~C~IC~~~~~~---p~~l~-CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 287 (289)
+++..|+||++.+.+ ++.++ |||.||..|+.+|+ .....||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~-----------~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWL-----------GSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTT-----------TTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHH-----------HcCCcCcCCCCEeE
Confidence 567899999999887 67776 99999999999884 24568999998764
No 39
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.04 E-value=1.5e-10 Score=83.71 Aligned_cols=50 Identities=32% Similarity=0.701 Sum_probs=40.7
Q ss_pred cccccccccccCCCCCc---EeccCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccccccC
Q 022989 228 LEYDLTCAVCLDLVFNP---YALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELAG 288 (289)
Q Consensus 228 ~~~~~~C~IC~~~~~~p---~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 288 (289)
..+...|+||++.+.++ +.++|||.||..|+.+|+. ....||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~-----------~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLE-----------QHDSCPVCRKSLTG 64 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHT-----------TTCSCTTTCCCCCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHH-----------cCCcCcCcCCccCC
Confidence 35679999999998866 4479999999999999852 34689999998753
No 40
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.03 E-value=1.1e-10 Score=78.56 Aligned_cols=48 Identities=27% Similarity=0.704 Sum_probs=40.2
Q ss_pred cccccccccCCCCC----cEeccCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccccccC
Q 022989 230 YDLTCAVCLDLVFN----PYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELAG 288 (289)
Q Consensus 230 ~~~~C~IC~~~~~~----p~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 288 (289)
+...|+||++.+.+ ++.++|||.||..|+.+|+. ....||+||..+++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-----------~~~~CP~Cr~~~~g 55 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK-----------EGYRCPLCSGPSSG 55 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHH-----------HTCCCTTSCCSSCC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHH-----------cCCcCCCCCCcCCC
Confidence 56889999998866 67789999999999999863 22789999998863
No 41
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.03 E-value=8.3e-11 Score=104.76 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=42.4
Q ss_pred ccccccccccCCCCCcEeccCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccccccC
Q 022989 229 EYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELAG 288 (289)
Q Consensus 229 ~~~~~C~IC~~~~~~p~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 288 (289)
.+.+.||||++++.+||+++|||+||..||..|+. .+...||+||.+++.
T Consensus 206 ~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~----------~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQ----------RVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHH----------HTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHH----------HCCCCCcCCCCCCch
Confidence 36799999999999999999999999999999863 123349999998763
No 42
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.02 E-value=2.3e-10 Score=80.80 Aligned_cols=49 Identities=31% Similarity=0.769 Sum_probs=39.4
Q ss_pred ccccccccccCCCC---CcEeccCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccccccC
Q 022989 229 EYDLTCAVCLDLVF---NPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELAG 288 (289)
Q Consensus 229 ~~~~~C~IC~~~~~---~p~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 288 (289)
.....|+||++.+. .++.++|||.||..|+..|+. ....||+||..+..
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~-----------~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLI-----------TNKKCPICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHH-----------HCSBCTTTCSBSCS
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHH-----------cCCCCcCcCccccC
Confidence 46789999999774 456689999999999999863 23469999998753
No 43
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.02 E-value=1.2e-10 Score=81.96 Aligned_cols=48 Identities=29% Similarity=0.700 Sum_probs=40.4
Q ss_pred ccccccccccCCCCCc-EeccCCCcccHHhHHHhhhhHhHhcccCCCCCCcccccccccc
Q 022989 229 EYDLTCAVCLDLVFNP-YALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELA 287 (289)
Q Consensus 229 ~~~~~C~IC~~~~~~p-~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 287 (289)
+....|+||++.+.+| +.++|||.||..|+.+|+. ....||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~-----------~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIR-----------QNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHH-----------HSCSTTTTCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHh-----------CcCcCcCCChhhH
Confidence 3568999999999997 6689999999999999853 2368999998875
No 44
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.00 E-value=1.9e-10 Score=86.08 Aligned_cols=49 Identities=24% Similarity=0.614 Sum_probs=41.4
Q ss_pred ccccccccccCCCCC---cEeccCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccccccC
Q 022989 229 EYDLTCAVCLDLVFN---PYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELAG 288 (289)
Q Consensus 229 ~~~~~C~IC~~~~~~---p~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 288 (289)
.++..|+||++.+.. ++.++|||.||..|+..|+. ....||+||..+.+
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~-----------~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQ-----------KSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHT-----------TTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHH-----------cCCcCcCcCccCCC
Confidence 467899999998877 67789999999999999852 34689999998865
No 45
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.99 E-value=2.8e-10 Score=85.72 Aligned_cols=52 Identities=17% Similarity=0.407 Sum_probs=41.5
Q ss_pred ccccccccccCCCCCcEecc-CCCcccHHhHHHhhhhHhHhcccCCCCCCcccc--cccc
Q 022989 229 EYDLTCAVCLDLVFNPYALS-CGHLFCKLCACSAASVMVFEGLKSASPDSKCPI--CREE 285 (289)
Q Consensus 229 ~~~~~C~IC~~~~~~p~~l~-CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~--CR~~ 285 (289)
.+.+.||||++++.+||+++ |||+||..||..|+.- .........||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~-----~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIES-----RQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHH-----HHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHH-----ccCcCCCCCCCcCcCccc
Confidence 46799999999999999996 9999999999999641 101124578999 9855
No 46
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.98 E-value=2.1e-10 Score=96.20 Aligned_cols=50 Identities=14% Similarity=0.124 Sum_probs=42.4
Q ss_pred ccccccccccCCCCCcEeccCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccccccC
Q 022989 229 EYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELAG 288 (289)
Q Consensus 229 ~~~~~C~IC~~~~~~p~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 288 (289)
.+.+.||||++++.+||+++|||+||..||..|+. ..+..||.|+.++..
T Consensus 104 p~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~----------~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQ----------RVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHH----------HTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCCCeECCCCCEECHHHHHHHHH----------hCCCCCCCCcCCCCh
Confidence 36899999999999999999999999999999963 112379999998753
No 47
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=2.7e-10 Score=81.59 Aligned_cols=50 Identities=26% Similarity=0.529 Sum_probs=40.5
Q ss_pred ccccccccccccCCCCCcEe---ccCCCcccHHhHHHhhhhHhHhcccCCCCCCcccccccccc
Q 022989 227 KLEYDLTCAVCLDLVFNPYA---LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELA 287 (289)
Q Consensus 227 ~~~~~~~C~IC~~~~~~p~~---l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 287 (289)
.+..+..|+||++.+.++.. ++|||.||..|+.+|+. ....||+||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~-----------~~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLE-----------VRKVCPLCNMPVL 63 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHH-----------HCSBCTTTCCBCS
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHH-----------cCCcCCCcCcccc
Confidence 34567899999999887654 49999999999999863 2248999999875
No 48
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.98 E-value=2.5e-10 Score=82.08 Aligned_cols=49 Identities=27% Similarity=0.546 Sum_probs=41.2
Q ss_pred ccccccccccCCCCCc---EeccCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccccccC
Q 022989 229 EYDLTCAVCLDLVFNP---YALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELAG 288 (289)
Q Consensus 229 ~~~~~C~IC~~~~~~p---~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 288 (289)
.+...|+||++.+.++ +.++|||.||..|+..|+. ....||+||+.+.+
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~-----------~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLK-----------ANRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHH-----------HCSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHH-----------cCCcCcCcCCcCCC
Confidence 4678999999998877 6689999999999999853 23589999998865
No 49
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.96 E-value=2.8e-10 Score=94.70 Aligned_cols=52 Identities=33% Similarity=0.690 Sum_probs=44.2
Q ss_pred ccccccccccccCCCCCcEeccCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccccccC
Q 022989 227 KLEYDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELAG 288 (289)
Q Consensus 227 ~~~~~~~C~IC~~~~~~p~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 288 (289)
.+.+.+.|+||++++.+|+.++|||+||..|+.+|+. .....||.||..+..
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIR----------DAGHKCPVDNEILLE 65 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHH----------HHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHH----------hCCCCCCCCccCcch
Confidence 4568899999999999999999999999999999853 122489999998764
No 50
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=2e-10 Score=82.78 Aligned_cols=47 Identities=34% Similarity=0.780 Sum_probs=40.4
Q ss_pred ccccccccccccCCCCCcEeccCCCc-ccHHhHHHhhhhHhHhcccCCCCCCccccccccccC
Q 022989 227 KLEYDLTCAVCLDLVFNPYALSCGHL-FCKLCACSAASVMVFEGLKSASPDSKCPICREELAG 288 (289)
Q Consensus 227 ~~~~~~~C~IC~~~~~~p~~l~CgH~-FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 288 (289)
.+.+...|+||++.+.+|+.++|||. ||..|+.. ...||+||.++..
T Consensus 21 ~~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~---------------~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 21 RLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA---------------VDKCPMCYTVITF 68 (75)
T ss_dssp HHHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH---------------CSBCTTTCCBCCC
T ss_pred cCCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC---------------CCCCccCCceecC
Confidence 34567899999999999999999999 99999843 2689999998764
No 51
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.93 E-value=3.2e-10 Score=81.54 Aligned_cols=47 Identities=34% Similarity=0.801 Sum_probs=40.5
Q ss_pred ccccccccccccCCCCCcEeccCCCc-ccHHhHHHhhhhHhHhcccCCCCCCccccccccccC
Q 022989 227 KLEYDLTCAVCLDLVFNPYALSCGHL-FCKLCACSAASVMVFEGLKSASPDSKCPICREELAG 288 (289)
Q Consensus 227 ~~~~~~~C~IC~~~~~~p~~l~CgH~-FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 288 (289)
.+.++..|+||++.+.+|+.++|||. ||..|+..| ..||+||..+..
T Consensus 20 ~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~---------------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 20 RLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV---------------DKCPMCYTVITF 67 (74)
T ss_dssp HHHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC---------------SBCTTTCCBCSE
T ss_pred cCccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC---------------ccCCCcCcCccC
Confidence 34577999999999999999999999 999998432 789999998753
No 52
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.90 E-value=4.2e-10 Score=89.12 Aligned_cols=49 Identities=27% Similarity=0.760 Sum_probs=42.3
Q ss_pred ccccccccccCCCCCc-------EeccCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccccccC
Q 022989 229 EYDLTCAVCLDLVFNP-------YALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELAG 288 (289)
Q Consensus 229 ~~~~~C~IC~~~~~~p-------~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 288 (289)
.+.+.|+||++.+.+| +.++|||+||..|+.+|+. ....||+||..+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-----------~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-----------NANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHT-----------TCSBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHH-----------hCCCCCCCCCcCcc
Confidence 3679999999999998 8899999999999999852 34589999998764
No 53
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.87 E-value=1.2e-09 Score=84.83 Aligned_cols=52 Identities=19% Similarity=0.484 Sum_probs=40.1
Q ss_pred cccccccccCCCCCcE------------------eccCCCcccHHhHHHhhhhHhHhcccCCCCCCcccccccccc
Q 022989 230 YDLTCAVCLDLVFNPY------------------ALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELA 287 (289)
Q Consensus 230 ~~~~C~IC~~~~~~p~------------------~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 287 (289)
.+..|+||++.+.+|. .++|||.||..||..|+.. ........||+||..+.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~------~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCN------GNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHH------TCCSSCCBCTTTCCBSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHc------ccCCCCCcCCCCCCccC
Confidence 3569999999987764 6799999999999999631 00124578999998874
No 54
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.81 E-value=1.9e-09 Score=94.96 Aligned_cols=50 Identities=20% Similarity=0.435 Sum_probs=42.4
Q ss_pred ccccccccccCCCCCcEe-ccCCCcccHHhHHHhhhhHhHhcccCCCCCCcccc--cccccc
Q 022989 229 EYDLTCAVCLDLVFNPYA-LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPI--CREELA 287 (289)
Q Consensus 229 ~~~~~C~IC~~~~~~p~~-l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~--CR~~~~ 287 (289)
...+.||||++++.+||+ +.|||+||..||..|+. ..+...||+ |+..+.
T Consensus 179 ~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~---------~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQ---------GYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHST---------TCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHH---------hCCCCCCCcccccCcCc
Confidence 578999999999999998 59999999999998842 124578999 998765
No 55
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.79 E-value=2.8e-09 Score=74.40 Aligned_cols=48 Identities=27% Similarity=0.596 Sum_probs=40.7
Q ss_pred ccccccccccCCCCCcEec--cCCCc-ccHHhHHHhhhhHhHhcccCCCCCCcccccccccc
Q 022989 229 EYDLTCAVCLDLVFNPYAL--SCGHL-FCKLCACSAASVMVFEGLKSASPDSKCPICREELA 287 (289)
Q Consensus 229 ~~~~~C~IC~~~~~~p~~l--~CgH~-FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 287 (289)
.++..|+||++...+++.+ +|||. ||..|+.++.. ....||+||+++.
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~-----------~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKK-----------RNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHH-----------TTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHH-----------cCCcCCCcCcchh
Confidence 4678999999999999977 99999 89999988742 3467999999875
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.79 E-value=2.4e-09 Score=99.69 Aligned_cols=49 Identities=33% Similarity=0.668 Sum_probs=41.9
Q ss_pred cccccccccCCCCCcEeccCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccccccC
Q 022989 230 YDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELAG 288 (289)
Q Consensus 230 ~~~~C~IC~~~~~~p~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 288 (289)
....|+||++.+.+|+.++|||.||..|+..|.. .....||+||..+..
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~----------~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQE----------SEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHH----------HTCSBCTTTCCBCCE
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHh----------cCCCCCCCCCCccCC
Confidence 4479999999999999999999999999988842 145789999998753
No 57
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.75 E-value=2.8e-09 Score=77.62 Aligned_cols=45 Identities=33% Similarity=0.836 Sum_probs=39.1
Q ss_pred cccccccccccCCCCCcEeccCCCc-ccHHhHHHhhhhHhHhcccCCCCCCcccccccccc
Q 022989 228 LEYDLTCAVCLDLVFNPYALSCGHL-FCKLCACSAASVMVFEGLKSASPDSKCPICREELA 287 (289)
Q Consensus 228 ~~~~~~C~IC~~~~~~p~~l~CgH~-FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 287 (289)
+.+...|+||++...+|+.++|||. ||..|+..+ ..||+||..+.
T Consensus 15 l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~---------------~~CP~Cr~~i~ 60 (79)
T 2yho_A 15 LKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL---------------QSCPVCRSRVE 60 (79)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC---------------SBCTTTCCBCC
T ss_pred CCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc---------------CcCCCCCchhh
Confidence 4567899999999999999999999 999998432 48999999875
No 58
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=7.1e-09 Score=75.73 Aligned_cols=47 Identities=26% Similarity=0.630 Sum_probs=37.0
Q ss_pred cccccccccCCCCC--------------cEec-cCCCcccHHhHHHhhhhHhHhcccCCCCCCcccccccccc
Q 022989 230 YDLTCAVCLDLVFN--------------PYAL-SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELA 287 (289)
Q Consensus 230 ~~~~C~IC~~~~~~--------------p~~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 287 (289)
++..|+||++.+.+ ++.+ +|||.||..||.+|+ .....||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl-----------~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWV-----------KQNNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHT-----------TTCCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHH-----------HhCCCCCCcCCCcc
Confidence 45778899888866 4455 599999999999984 23468999999874
No 59
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=9e-09 Score=72.72 Aligned_cols=45 Identities=31% Similarity=0.664 Sum_probs=38.9
Q ss_pred ccccccccccCCCCCcEeccCCCc-ccHHhHHHhhhhHhHhcccCCCCCCccccccccccC
Q 022989 229 EYDLTCAVCLDLVFNPYALSCGHL-FCKLCACSAASVMVFEGLKSASPDSKCPICREELAG 288 (289)
Q Consensus 229 ~~~~~C~IC~~~~~~p~~l~CgH~-FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 288 (289)
.+...|+||++...+++.++|||. ||..|+.. ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~---------------~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY---------------FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH---------------CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc---------------CCCCCCCCcchhc
Confidence 357899999999999999999999 99999853 2689999998753
No 60
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.72 E-value=6.2e-09 Score=72.39 Aligned_cols=47 Identities=28% Similarity=0.624 Sum_probs=39.7
Q ss_pred cccccccccCCCCCcEec--cCCCc-ccHHhHHHhhhhHhHhcccCCCCCCcccccccccc
Q 022989 230 YDLTCAVCLDLVFNPYAL--SCGHL-FCKLCACSAASVMVFEGLKSASPDSKCPICREELA 287 (289)
Q Consensus 230 ~~~~C~IC~~~~~~p~~l--~CgH~-FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 287 (289)
....|+||++...+++.+ +|||. ||..|+..+.. ....||+||+++.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~-----------~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKK-----------AGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHH-----------TTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHH-----------hCCcCCCcCchhh
Confidence 467899999999999877 99998 99999987632 2368999999875
No 61
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.67 E-value=4.5e-09 Score=83.08 Aligned_cols=50 Identities=26% Similarity=0.751 Sum_probs=42.4
Q ss_pred ccccccccccCCCCCc-------EeccCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccccccCC
Q 022989 229 EYDLTCAVCLDLVFNP-------YALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELAGN 289 (289)
Q Consensus 229 ~~~~~C~IC~~~~~~p-------~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~~~ 289 (289)
.+...|+||++.+.+| +.++|||.||..|+.+|+. ....||+||..+..+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-----------~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-----------NANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHH-----------HCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHH-----------cCCCCCCCCCcCChh
Confidence 4678999999998887 7889999999999999863 346899999988653
No 62
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.63 E-value=1e-08 Score=76.89 Aligned_cols=53 Identities=26% Similarity=0.592 Sum_probs=41.1
Q ss_pred cccccccccCCCCCcEec---cCCCcccHHhHHHhhhhHhHhcccCCCCCCcccc--cccc
Q 022989 230 YDLTCAVCLDLVFNPYAL---SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPI--CREE 285 (289)
Q Consensus 230 ~~~~C~IC~~~~~~p~~l---~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~--CR~~ 285 (289)
+.+.|+||++.+..|.++ +|||.||..|+..++.....++. .....||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~---~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGL---ETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCS---CCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCC---cccccCccccCCCC
Confidence 468999999999888663 69999999999998754333221 23578999 9987
No 63
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.58 E-value=9.5e-09 Score=94.81 Aligned_cols=47 Identities=45% Similarity=0.958 Sum_probs=40.8
Q ss_pred ccccccccccccCCCCCcEeccCCCc-ccHHhHHHhhhhHhHhcccCCCCCCccccccccccC
Q 022989 227 KLEYDLTCAVCLDLVFNPYALSCGHL-FCKLCACSAASVMVFEGLKSASPDSKCPICREELAG 288 (289)
Q Consensus 227 ~~~~~~~C~IC~~~~~~p~~l~CgH~-FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 288 (289)
.+.++..|+||++.+.+|+.++|||. ||..|+..+ ..||+||.++..
T Consensus 291 ~l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~---------------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 291 RLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL---------------RKCPICRGIIKG 338 (345)
T ss_dssp HHHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC---------------SBCTTTCCBCCE
T ss_pred hCcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC---------------CcCCCCCCCccC
Confidence 45678999999999999999999999 999998432 689999998753
No 64
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.57 E-value=4.6e-08 Score=75.16 Aligned_cols=46 Identities=22% Similarity=0.408 Sum_probs=37.6
Q ss_pred cccccccccCCCCCc------------------EeccCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccccc
Q 022989 230 YDLTCAVCLDLVFNP------------------YALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREEL 286 (289)
Q Consensus 230 ~~~~C~IC~~~~~~p------------------~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~ 286 (289)
++..|+||++.+.++ +.++|+|.|+..||..|+ .....||+||+.+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl-----------~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL-----------KTRQVCPLDNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHH-----------TTCSBCSSSCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHH-----------HcCCcCcCCCCcc
Confidence 457899999988765 337999999999999995 2457899999875
No 65
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.42 E-value=8.6e-08 Score=66.16 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=39.3
Q ss_pred ccccccccCCCCCcEec-cCCCcccHHhHHHhhhhHhHhcccCCCCCCcccccccccc
Q 022989 231 DLTCAVCLDLVFNPYAL-SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELA 287 (289)
Q Consensus 231 ~~~C~IC~~~~~~p~~l-~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 287 (289)
.+.||||++++.+|+.+ +|||+|+..||.+|+. ...+||++++++.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~-----------~~~~cP~t~~~L~ 49 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVK-----------DTGNDPITNEPLS 49 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHH-----------HHSBCTTTCCBCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHH-----------hCCCCcCCcCCCC
Confidence 47899999999999998 9999999999999963 1245999998875
No 66
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.20 E-value=2e-07 Score=72.74 Aligned_cols=46 Identities=24% Similarity=0.460 Sum_probs=0.9
Q ss_pred cccccccccCCCCCc-----------------Ee-ccCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccccc
Q 022989 230 YDLTCAVCLDLVFNP-----------------YA-LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREEL 286 (289)
Q Consensus 230 ~~~~C~IC~~~~~~p-----------------~~-l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~ 286 (289)
++..|+||++.+.++ +. ++|+|.|+..||..|+ .....||+||.++
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl-----------~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL-----------KTRQVCPLDNREW 110 (117)
T ss_dssp CC-------------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHH-----------HcCCcCCCCCCee
Confidence 356899999988763 22 5899999999999984 2357899999874
No 67
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=1.3e-06 Score=63.49 Aligned_cols=49 Identities=20% Similarity=0.411 Sum_probs=39.4
Q ss_pred cccccccccCCC--CCcEeccCC-----CcccHHhHHHhhhhHhHhcccCCCCCCcccccccccc
Q 022989 230 YDLTCAVCLDLV--FNPYALSCG-----HLFCKLCACSAASVMVFEGLKSASPDSKCPICREELA 287 (289)
Q Consensus 230 ~~~~C~IC~~~~--~~p~~l~Cg-----H~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 287 (289)
+...|+||++.+ .+++.++|. |.|+..||.+|+.. .....||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~---------~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKS---------SDTRCCELCKYEFI 69 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHH---------HCCSBCSSSCCBCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhh---------CCCCCCCCCCCeee
Confidence 567899999866 467888996 99999999999641 23468999998874
No 68
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.71 E-value=4.2e-05 Score=54.60 Aligned_cols=49 Identities=18% Similarity=0.508 Sum_probs=38.3
Q ss_pred cccccccccCCCCCcEe-ccCCCcccHHhHHHhhhhHhHhcccCCCCCCcccccccccc
Q 022989 230 YDLTCAVCLDLVFNPYA-LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELA 287 (289)
Q Consensus 230 ~~~~C~IC~~~~~~p~~-l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 287 (289)
....|+||.+.+..-.. ..|+|.|...||.+|++ ......||+||....
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~---------~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQ---------SNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHST---------TCSSCCCTTTCSCCC
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHH---------hcCCCCCCCCcCcCC
Confidence 45789999998875444 48999999999999953 123478999998764
No 69
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.62 E-value=3.2e-05 Score=57.83 Aligned_cols=45 Identities=27% Similarity=0.544 Sum_probs=34.6
Q ss_pred ccccccCCCCCcE-eccCCCcccHHhHHHhhhhHhHhcccCCCCCCcccccccccc
Q 022989 233 TCAVCLDLVFNPY-ALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELA 287 (289)
Q Consensus 233 ~C~IC~~~~~~p~-~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 287 (289)
.|++|.-.+..-. +.||+|.||..|+..+.. .+...||.|+.++.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~----------~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEK----------KGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHH----------TTCCBCTTTCCBCS
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHh----------ccCCCCcCcCCeee
Confidence 5888876555433 479999999999987632 35678999999875
No 70
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.41 E-value=5.5e-05 Score=68.96 Aligned_cols=60 Identities=17% Similarity=0.411 Sum_probs=39.8
Q ss_pred ccccccccccCCCCC----cEe----ccCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccccccC
Q 022989 229 EYDLTCAVCLDLVFN----PYA----LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELAG 288 (289)
Q Consensus 229 ~~~~~C~IC~~~~~~----p~~----l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 288 (289)
+....|+||+..+.+ |.. ..|||.|...|+.+|+......+..-..-...||.||.+++-
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 456899999997775 322 379999999999999742111000001123689999998753
No 71
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.31 E-value=0.00011 Score=50.21 Aligned_cols=49 Identities=20% Similarity=0.390 Sum_probs=38.7
Q ss_pred cccccccccCCCCCcEeccCC--C---cccHHhHHHhhhhHhHhcccCCCCCCcccccccccc
Q 022989 230 YDLTCAVCLDLVFNPYALSCG--H---LFCKLCACSAASVMVFEGLKSASPDSKCPICREELA 287 (289)
Q Consensus 230 ~~~~C~IC~~~~~~p~~l~Cg--H---~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 287 (289)
+...|.||++...+|..+||. + .|...|+.+|+.. ++...||+|+..+.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~---------~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTI---------SRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHH---------HTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHh---------CCCCccCCCCCeee
Confidence 567899999887778778865 4 7899999999641 24578999999875
No 72
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.03 E-value=0.0028 Score=47.31 Aligned_cols=31 Identities=16% Similarity=0.489 Sum_probs=26.9
Q ss_pred cccccccccCC-CCCcEe--ccCCCcccHHhHHH
Q 022989 230 YDLTCAVCLDL-VFNPYA--LSCGHLFCKLCACS 260 (289)
Q Consensus 230 ~~~~C~IC~~~-~~~p~~--l~CgH~FC~~Cl~~ 260 (289)
+++.|+||.+. ..+|+. +.|+|+||..|+..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 46899999975 677887 89999999999987
No 73
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=94.68 E-value=0.031 Score=48.56 Aligned_cols=48 Identities=19% Similarity=0.533 Sum_probs=37.2
Q ss_pred ccccccccCCCCCcEe-ccCCCcccHHhHHHhhhhHhHhcccCCCCCCcccccccccc
Q 022989 231 DLTCAVCLDLVFNPYA-LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELA 287 (289)
Q Consensus 231 ~~~C~IC~~~~~~p~~-l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 287 (289)
-..|.||.+++..-+. ..|+|.|...|+..|++ ......||.|+...+
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~---------~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQ---------SNAEPRCPHCNDYWP 228 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTT---------TCSSCBCTTTCCBCC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHH---------hCCCCCCCCCCCCCC
Confidence 5789999998875554 35999999999998852 234578999997654
No 74
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=91.18 E-value=0.4 Score=34.06 Aligned_cols=33 Identities=24% Similarity=0.620 Sum_probs=27.7
Q ss_pred cccccccccCCCCCcEeccC----CCcccHHhHHHhh
Q 022989 230 YDLTCAVCLDLVFNPYALSC----GHLFCKLCACSAA 262 (289)
Q Consensus 230 ~~~~C~IC~~~~~~p~~l~C----gH~FC~~Cl~~~~ 262 (289)
..+.|.+|.+.+.+.....| .|.||..|-....
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sI 50 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESI 50 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHH
Confidence 56999999999999876666 6999999987654
No 75
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=86.93 E-value=0.53 Score=48.35 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=40.9
Q ss_pred ccccccccccCCCCCcEeccCC-CcccHHhHHHhhhhHhHhcccCCCCCCcccccccccc
Q 022989 229 EYDLTCAVCLDLVFNPYALSCG-HLFCKLCACSAASVMVFEGLKSASPDSKCPICREELA 287 (289)
Q Consensus 229 ~~~~~C~IC~~~~~~p~~l~Cg-H~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 287 (289)
-+.+.|||-.+++.+||+++.| +++=..+|.+|+. ...+||.=|++++
T Consensus 889 P~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~-----------~~~tdP~Tr~~L~ 937 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLL-----------SDSTDPFNRMPLK 937 (968)
T ss_dssp CGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHT-----------TCCBCTTTCCBCC
T ss_pred cHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHh-----------cCCCCCCCCCCCC
Confidence 4689999999999999999998 6999999999952 2468998887764
No 76
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=81.98 E-value=1.4 Score=32.29 Aligned_cols=47 Identities=26% Similarity=0.481 Sum_probs=35.0
Q ss_pred ccccccccccCCCCCcEeccC-CCcccHHhHHHhhhhHhHhcccCCCCCCccccccccccC
Q 022989 229 EYDLTCAVCLDLVFNPYALSC-GHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELAG 288 (289)
Q Consensus 229 ~~~~~C~IC~~~~~~p~~l~C-gH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 288 (289)
-..+-|..|..... -.+.| .|-.|..|+... .+....||+|..++..
T Consensus 26 ~G~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlm-----------L~~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 26 LGPQFCKSCWFENK--GLVECNNHYLCLNCLTLL-----------LSVSNRCPICKMPLPT 73 (99)
T ss_dssp SCCCCCCSSCSCCS--SEEECSSCEEEHHHHHHT-----------CSSSSEETTTTEECCC
T ss_pred cCcccChhhccccC--CeeeecchhhHHHHHHHH-----------HhhccCCcccCCcCCc
Confidence 35688999986544 24555 699999999776 3577899999987753
No 77
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=81.60 E-value=1.1 Score=41.24 Aligned_cols=52 Identities=23% Similarity=0.482 Sum_probs=37.1
Q ss_pred ccccccccccCCCCCcEe-ccCCCcccHHhHHHhhhhHhHhcccCCCCCCcccccccccc
Q 022989 229 EYDLTCAVCLDLVFNPYA-LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELA 287 (289)
Q Consensus 229 ~~~~~C~IC~~~~~~p~~-l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 287 (289)
.-.+.||+-...+..|+. ..|.|.-|..-. .++.. .. ..+...||+|...+.
T Consensus 247 ~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~-sfL~~---~~---~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 247 IMSLQCPISYTRMKYPSKSINCKHLQCFDAL-WFLHS---QL---QIPTWQCPVCQIDIA 299 (371)
T ss_dssp EEESBCTTTSSBCSSEEEETTCCSSCCEEHH-HHHHH---HH---HSCCCBCTTTCCBCC
T ss_pred EEeecCCCccccccccCcCCcCCCcceECHH-HHHHH---hh---cCCceeCCCCCcccC
Confidence 356999999999999998 689998666542 22111 11 246789999988764
No 78
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=80.83 E-value=1.2 Score=40.82 Aligned_cols=52 Identities=25% Similarity=0.477 Sum_probs=37.1
Q ss_pred ccccccccccCCCCCcEe-ccCCCcccHHhHHHhhhhHhHhcccCCCCCCcccccccccc
Q 022989 229 EYDLTCAVCLDLVFNPYA-LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELA 287 (289)
Q Consensus 229 ~~~~~C~IC~~~~~~p~~-l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 287 (289)
.-.+.||+-...+..|+. ..|.|.-|..-. .+... .. ..+...||+|...+.
T Consensus 213 ~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~-sfL~~---~~---~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 213 RVSLMCPLGKMRLTIPCRAVTCTHLQCFDAA-LYLQM---NE---KKPTWICPVCDKKAA 265 (360)
T ss_dssp EEESBCTTTCSBCSSEEEETTCCCCCCEEHH-HHHHH---HH---HSCCCBCTTTCSBCC
T ss_pred EEeeeCCCccceeccCCcCCCCCCCccCCHH-HHHHH---Hh---hCCCeECCCCCcccC
Confidence 356999999999999998 689998665532 22111 11 246789999998765
No 79
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=56.88 E-value=8.2 Score=30.43 Aligned_cols=53 Identities=21% Similarity=0.375 Sum_probs=32.6
Q ss_pred cccccccccCCCCCcEe--ccCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccc
Q 022989 230 YDLTCAVCLDLVFNPYA--LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICRE 284 (289)
Q Consensus 230 ~~~~C~IC~~~~~~p~~--l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~ 284 (289)
.+..|.+|.+--. +. -.|...||..|+...+............+...||.|+.
T Consensus 62 ~~d~C~vC~~GG~--LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEGGN--LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCCSS--EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCeecccCCCCc--EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 4578999986332 22 37889999999976542111111101346789999974
No 80
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=55.14 E-value=9.2 Score=29.64 Aligned_cols=55 Identities=20% Similarity=0.330 Sum_probs=32.2
Q ss_pred cccccccccCCCCCcEeccCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccc
Q 022989 230 YDLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICRE 284 (289)
Q Consensus 230 ~~~~C~IC~~~~~~p~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~ 284 (289)
.+..|.||.+--.-.---.|-..||..|+...+.....+..........|+.|+-
T Consensus 56 ~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 56 MDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 3456999986322101126889999999986532111111111356789999964
No 81
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=53.78 E-value=18 Score=24.37 Aligned_cols=49 Identities=20% Similarity=0.440 Sum_probs=31.6
Q ss_pred cccccccccCCCCCcEe--ccCCCcccHHhHHHhhhhHhHhcccCCCCCCcccccccccc
Q 022989 230 YDLTCAVCLDLVFNPYA--LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELA 287 (289)
Q Consensus 230 ~~~~C~IC~~~~~~p~~--l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 287 (289)
....|.||.+-- + +. -.|...|...|+.... .....+...||.|.....
T Consensus 11 ~~~~C~vC~~~~-~-ll~Cd~C~~~~H~~Cl~P~l-------~~~P~g~W~C~~C~~~~~ 61 (66)
T 2lri_C 11 PGARCGVCGDGT-D-VLRCTHCAAAFHWRCHFPAG-------TSRPGTGLRCRSCSGDVT 61 (66)
T ss_dssp TTCCCTTTSCCT-T-CEECSSSCCEECHHHHCTTT-------CCCCSSSCCCTTTTTCCC
T ss_pred CCCCcCCCCCCC-e-EEECCCCCCceecccCCCcc-------CcCCCCCEECccccCCCc
Confidence 456799998632 2 22 3688899999985331 111245689999986543
No 82
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=50.95 E-value=6.8 Score=30.09 Aligned_cols=31 Identities=23% Similarity=0.531 Sum_probs=21.9
Q ss_pred cccccccccCCCCCcE---e-ccCCCcccHHhHHH
Q 022989 230 YDLTCAVCLDLVFNPY---A-LSCGHLFCKLCACS 260 (289)
Q Consensus 230 ~~~~C~IC~~~~~~p~---~-l~CgH~FC~~Cl~~ 260 (289)
+...|.+|...|.--. . -.||+.||..|...
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 3467889987665221 1 47999999999754
No 83
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=50.89 E-value=2.9 Score=24.66 Aligned_cols=17 Identities=12% Similarity=0.331 Sum_probs=13.3
Q ss_pred cccccccccCCCCCcEe
Q 022989 230 YDLTCAVCLDLVFNPYA 246 (289)
Q Consensus 230 ~~~~C~IC~~~~~~p~~ 246 (289)
+.+.||+|+..+..+..
T Consensus 4 EGFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 4 EGFICPQCMKSLGSADE 20 (34)
T ss_dssp EEEECTTTCCEESSHHH
T ss_pred cccCCcHHHHHcCCHHH
Confidence 46899999988877643
No 84
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=50.12 E-value=5.7 Score=29.66 Aligned_cols=27 Identities=30% Similarity=0.699 Sum_probs=17.5
Q ss_pred CcEeccCCCcccHHhHHHhhhhHhHhcccCCCCCCcccccccc
Q 022989 243 NPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREE 285 (289)
Q Consensus 243 ~p~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~ 285 (289)
.|.-..||+.|+. . ......||.|+..
T Consensus 67 p~~C~~CG~~F~~----~------------~~kPsrCP~CkSe 93 (105)
T 2gmg_A 67 PAQCRKCGFVFKA----E------------INIPSRCPKCKSE 93 (105)
T ss_dssp CCBBTTTCCBCCC----C------------SSCCSSCSSSCCC
T ss_pred CcChhhCcCeecc----c------------CCCCCCCcCCCCC
Confidence 3344679999821 1 2356889999864
No 85
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=49.60 E-value=25 Score=25.33 Aligned_cols=48 Identities=21% Similarity=0.492 Sum_probs=33.5
Q ss_pred cccccccccCCCCC-----cEe--ccCCCcccHHhHHHhhhhHhHhcccCCCCCCcccccccccc
Q 022989 230 YDLTCAVCLDLVFN-----PYA--LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELA 287 (289)
Q Consensus 230 ~~~~C~IC~~~~~~-----p~~--l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 287 (289)
..-.|.||.+.+-- +-. ..|+-..|..|..-- .. .+...||-|..++.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYE-------rk---eG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYE-------RR---EGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHH-------HH---TSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHH-------Hh---ccCccccccCCccc
Confidence 34789999986431 212 268888999998532 22 46788999998875
No 86
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=48.46 E-value=9.4 Score=26.22 Aligned_cols=30 Identities=23% Similarity=0.504 Sum_probs=21.3
Q ss_pred ccccccccCCCCCcEe----ccCCCcccHHhHHH
Q 022989 231 DLTCAVCLDLVFNPYA----LSCGHLFCKLCACS 260 (289)
Q Consensus 231 ~~~C~IC~~~~~~p~~----l~CgH~FC~~Cl~~ 260 (289)
+..|.+|...|.--.. ..||..||..|...
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 3579999876653211 47999999999743
No 87
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=48.17 E-value=16 Score=27.35 Aligned_cols=46 Identities=17% Similarity=0.426 Sum_probs=33.3
Q ss_pred cccccccccCCCCC-cEeccCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccccccC
Q 022989 230 YDLTCAVCLDLVFN-PYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELAG 288 (289)
Q Consensus 230 ~~~~C~IC~~~~~~-p~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 288 (289)
+-+.|..|...+.. +....=|..+|..|..+. ...+|+.|..++.+
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~-------------~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKN-------------HAVVCQGCHNAIDP 75 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHH-------------SCCBCTTTCSBCCT
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcC-------------cCccCcccCCcCCc
Confidence 46899999887765 333566888999998653 33578888887764
No 88
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=45.90 E-value=11 Score=25.79 Aligned_cols=51 Identities=14% Similarity=0.272 Sum_probs=31.6
Q ss_pred cccccccccCCCCCcEec---cCCCcccHHhHHHhhhhHhHhcccCCCCCCcccccccccc
Q 022989 230 YDLTCAVCLDLVFNPYAL---SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELA 287 (289)
Q Consensus 230 ~~~~C~IC~~~~~~p~~l---~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 287 (289)
+...|+||...-..-.++ .|..-|...|+.-. ..........||.|+..+.
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~-------~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIM-------AAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCS-------SCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCC-------ccCCCCCCEEChhccCchh
Confidence 457799998764432233 57777888887422 1111125688999987654
No 89
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=44.43 E-value=14 Score=26.51 Aligned_cols=32 Identities=22% Similarity=0.509 Sum_probs=22.3
Q ss_pred cccccccccCCCCCc---Ee-ccCCCcccHHhHHHh
Q 022989 230 YDLTCAVCLDLVFNP---YA-LSCGHLFCKLCACSA 261 (289)
Q Consensus 230 ~~~~C~IC~~~~~~p---~~-l~CgH~FC~~Cl~~~ 261 (289)
+...|.+|...|.-- .. ..||+.||..|....
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 456799998765421 11 479999999997543
No 90
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=43.97 E-value=10 Score=26.63 Aligned_cols=31 Identities=26% Similarity=0.655 Sum_probs=22.1
Q ss_pred cccccccccCCCCCcEe----ccCCCcccHHhHHH
Q 022989 230 YDLTCAVCLDLVFNPYA----LSCGHLFCKLCACS 260 (289)
Q Consensus 230 ~~~~C~IC~~~~~~p~~----l~CgH~FC~~Cl~~ 260 (289)
+...|.+|...|.--.. ..||..||..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 44679999886652211 47999999999754
No 91
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=43.58 E-value=2.4 Score=31.16 Aligned_cols=41 Identities=27% Similarity=0.658 Sum_probs=26.5
Q ss_pred ccccccccCCCCCcEeccCCCcccHHhHHHhhhhHhHhcccCCCCCCcccccccccc
Q 022989 231 DLTCAVCLDLVFNPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELA 287 (289)
Q Consensus 231 ~~~C~IC~~~~~~p~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 287 (289)
+..||+|...+.- .=++.+|..|-... .....||.|.++++
T Consensus 32 ~~~CP~Cq~eL~~----~g~~~hC~~C~~~f------------~~~a~CPdC~q~Le 72 (101)
T 2jne_A 32 ELHCPQCQHVLDQ----DNGHARCRSCGEFI------------EMKALCPDCHQPLQ 72 (101)
T ss_dssp CCBCSSSCSBEEE----ETTEEEETTTCCEE------------EEEEECTTTCSBCE
T ss_pred cccCccCCCccee----cCCEEECccccchh------------hccccCcchhhHHH
Confidence 3899999875531 22344588885321 34577999988764
No 92
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=43.01 E-value=11 Score=26.64 Aligned_cols=31 Identities=19% Similarity=0.435 Sum_probs=22.3
Q ss_pred cccccccccCCCCCcE---e-ccCCCcccHHhHHH
Q 022989 230 YDLTCAVCLDLVFNPY---A-LSCGHLFCKLCACS 260 (289)
Q Consensus 230 ~~~~C~IC~~~~~~p~---~-l~CgH~FC~~Cl~~ 260 (289)
+...|.+|...|.--. . ..||..||..|...
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 4578999988665321 1 47999999999744
No 93
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=41.64 E-value=9.3 Score=32.06 Aligned_cols=31 Identities=23% Similarity=0.513 Sum_probs=22.4
Q ss_pred cccccccccCCCCCc---Ee-ccCCCcccHHhHHH
Q 022989 230 YDLTCAVCLDLVFNP---YA-LSCGHLFCKLCACS 260 (289)
Q Consensus 230 ~~~~C~IC~~~~~~p---~~-l~CgH~FC~~Cl~~ 260 (289)
++..|.+|...|.-- .. ..||+.||..|...
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 457899998766421 11 47999999999754
No 94
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.44 E-value=11 Score=26.66 Aligned_cols=31 Identities=23% Similarity=0.418 Sum_probs=21.9
Q ss_pred cccccccccCCCCCcEe----ccCCCcccHHhHHH
Q 022989 230 YDLTCAVCLDLVFNPYA----LSCGHLFCKLCACS 260 (289)
Q Consensus 230 ~~~~C~IC~~~~~~p~~----l~CgH~FC~~Cl~~ 260 (289)
+...|.+|...|.--.. ..||..||..|...
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 44679999886642211 47999999999743
No 95
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=38.70 E-value=4.6 Score=36.12 Aligned_cols=45 Identities=29% Similarity=0.534 Sum_probs=29.0
Q ss_pred cccccccccCCCCCcEec----cCC--CcccHHhHHHhhhhHhHhcccCCCCCCcccccccc
Q 022989 230 YDLTCAVCLDLVFNPYAL----SCG--HLFCKLCACSAASVMVFEGLKSASPDSKCPICREE 285 (289)
Q Consensus 230 ~~~~C~IC~~~~~~p~~l----~Cg--H~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~ 285 (289)
..-.||+|.....-.+.. .=| +.+|..|-..|. -....||.|...
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~-----------~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWH-----------YVRIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEE-----------CCTTSCSSSCCC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEe-----------ecCcCCcCCCCC
Confidence 567899998765544332 133 467888876662 345689999754
No 96
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=38.01 E-value=20 Score=26.81 Aligned_cols=48 Identities=13% Similarity=0.121 Sum_probs=34.2
Q ss_pred cccccccccCCCCC---cEeccCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccccccC
Q 022989 230 YDLTCAVCLDLVFN---PYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELAG 288 (289)
Q Consensus 230 ~~~~C~IC~~~~~~---p~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 288 (289)
+-+.|..|...+.+ .....=|..||..|..+.+ .....|..|..++.+
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f-----------~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLF-----------GNSGAGGSGGHMGSG 81 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHH-----------CCCCSSSCSSCCSCC
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHc-----------CCCCccccCCCCcCc
Confidence 45899999988863 3345667889999986653 223479999888764
No 97
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=36.61 E-value=12 Score=28.65 Aligned_cols=30 Identities=27% Similarity=0.631 Sum_probs=20.6
Q ss_pred cccccccccCCCCCcEe----ccCCCcccHHhHH
Q 022989 230 YDLTCAVCLDLVFNPYA----LSCGHLFCKLCAC 259 (289)
Q Consensus 230 ~~~~C~IC~~~~~~p~~----l~CgH~FC~~Cl~ 259 (289)
+...|..|...|.--.. ..||..||..|..
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~ 51 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSS 51 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEE
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhC
Confidence 44689999886653211 4799999999963
No 98
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=36.02 E-value=15 Score=24.99 Aligned_cols=31 Identities=23% Similarity=0.521 Sum_probs=23.0
Q ss_pred cccccccccCCCCCcEe-ccC-CCcccHHhHHHhh
Q 022989 230 YDLTCAVCLDLVFNPYA-LSC-GHLFCKLCACSAA 262 (289)
Q Consensus 230 ~~~~C~IC~~~~~~p~~-l~C-gH~FC~~Cl~~~~ 262 (289)
+.--|.||.+... +. +.| |-.||..|+....
T Consensus 7 e~pWC~ICneDAt--lrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 7 GLPWCCICNEDAT--LRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCSSCTTTCSCCC--EEETTTTSEEECSSHHHHHT
T ss_pred CCCeeEEeCCCCe--EEecCCCCceehHHHHHHHc
Confidence 4566899998632 22 788 7899999997753
No 99
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=35.74 E-value=5.6 Score=25.17 Aligned_cols=12 Identities=33% Similarity=1.099 Sum_probs=9.0
Q ss_pred CCCccccccccc
Q 022989 275 PDSKCPICREEL 286 (289)
Q Consensus 275 ~~~~CP~CR~~~ 286 (289)
++.+||.|.-.+
T Consensus 22 P~IrCpyCGyri 33 (48)
T 4ayb_P 22 PGVRCPYCGYKI 33 (48)
T ss_dssp SSSCCTTTCCSC
T ss_pred CCcccCccCcEE
Confidence 568899997543
No 100
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=35.61 E-value=14 Score=26.48 Aligned_cols=31 Identities=23% Similarity=0.419 Sum_probs=21.6
Q ss_pred cccccccccCCCCCcEe----ccCCCcccHHhHHH
Q 022989 230 YDLTCAVCLDLVFNPYA----LSCGHLFCKLCACS 260 (289)
Q Consensus 230 ~~~~C~IC~~~~~~p~~----l~CgH~FC~~Cl~~ 260 (289)
+...|.+|...|.--.. ..||..||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 45679999876542211 47999999999743
No 101
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=34.57 E-value=15 Score=31.01 Aligned_cols=31 Identities=23% Similarity=0.478 Sum_probs=22.1
Q ss_pred cccccccccCCCCCcEe----ccCCCcccHHhHHH
Q 022989 230 YDLTCAVCLDLVFNPYA----LSCGHLFCKLCACS 260 (289)
Q Consensus 230 ~~~~C~IC~~~~~~p~~----l~CgH~FC~~Cl~~ 260 (289)
++..|.+|...|.--.. ..||+.||..|...
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 34689999876652211 47999999999754
No 102
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=34.26 E-value=37 Score=22.43 Aligned_cols=40 Identities=23% Similarity=0.507 Sum_probs=26.8
Q ss_pred cccccccCCCCCcEe---ccCCCcccHHhHHHhhhhHhHhcccCCCCCCccccc
Q 022989 232 LTCAVCLDLVFNPYA---LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPIC 282 (289)
Q Consensus 232 ~~C~IC~~~~~~p~~---l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~C 282 (289)
..|--|+..+.++.. ..|++.||..|=.= ....--.||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~f-----------iHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVF-----------VHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHT-----------TTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHH-----------HHhhccCCcCC
Confidence 347778777655442 47999999999421 13455679887
No 103
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=33.49 E-value=32 Score=27.56 Aligned_cols=31 Identities=16% Similarity=0.171 Sum_probs=21.1
Q ss_pred cccccccccCCCCCcEeccCCCcccHHhHHH
Q 022989 230 YDLTCAVCLDLVFNPYALSCGHLFCKLCACS 260 (289)
Q Consensus 230 ~~~~C~IC~~~~~~p~~l~CgH~FC~~Cl~~ 260 (289)
.-+.|..|...+.......=|..+|..|..+
T Consensus 86 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~ 116 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERCFSRGESVYCKDDFFK 116 (182)
T ss_dssp STTSCTTTCCCCSSCCEEETTEEECHHHHHH
T ss_pred ccCccCCCCCccCCCceeECCEeeecCcccc
Confidence 4578888887766533334567788888754
No 104
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=31.86 E-value=53 Score=21.44 Aligned_cols=47 Identities=19% Similarity=0.429 Sum_probs=30.6
Q ss_pred ccccccccccCCCCCcEe--ccCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccc
Q 022989 229 EYDLTCAVCLDLVFNPYA--LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICRE 284 (289)
Q Consensus 229 ~~~~~C~IC~~~~~~p~~--l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~ 284 (289)
..+..|.||.+. ..+. -.|...|...|+.... .....+...||.|..
T Consensus 9 ~~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p~l-------~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG--GEIILCDTCPRAYHMVCLDPDM-------EKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC--SSEEECSSSSCEEEHHHHCTTC-------CSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC--CcEEECCCCChhhhhhccCCCC-------CCCCCCceECccccc
Confidence 356789999873 2233 2677889999985421 112345688999975
No 105
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=31.25 E-value=6 Score=26.29 Aligned_cols=30 Identities=20% Similarity=0.444 Sum_probs=19.2
Q ss_pred cccccccCCCCCc-----Ee-cc--CCCcccHHhHHHh
Q 022989 232 LTCAVCLDLVFNP-----YA-LS--CGHLFCKLCACSA 261 (289)
Q Consensus 232 ~~C~IC~~~~~~p-----~~-l~--CgH~FC~~Cl~~~ 261 (289)
-.||-|...+... ++ .. |++.||..|...|
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~ 44 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPW 44 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCS
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCc
Confidence 4677766555432 22 13 8999999998655
No 106
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=31.11 E-value=37 Score=26.84 Aligned_cols=32 Identities=16% Similarity=0.159 Sum_probs=22.7
Q ss_pred cccccccccCCCCCcEeccCCCcccHHhHHHh
Q 022989 230 YDLTCAVCLDLVFNPYALSCGHLFCKLCACSA 261 (289)
Q Consensus 230 ~~~~C~IC~~~~~~p~~l~CgH~FC~~Cl~~~ 261 (289)
+-+.|..|...+.......=|..+|..|..+.
T Consensus 32 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~ 63 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKR 63 (169)
T ss_dssp TTSBCTTTCCBCCSCCEESSSCEECHHHHHHH
T ss_pred ccCccCCCCCcCCCCCcccCCeeeeccccccc
Confidence 56889999887765433445778899987654
No 107
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=31.09 E-value=27 Score=25.36 Aligned_cols=46 Identities=15% Similarity=0.247 Sum_probs=26.7
Q ss_pred cccccccccCCCCCcEec---cCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccc
Q 022989 230 YDLTCAVCLDLVFNPYAL---SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICRE 284 (289)
Q Consensus 230 ~~~~C~IC~~~~~~p~~l---~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~ 284 (289)
+...| ||.....+-.++ .|..-|...|+... .........||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~--------~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGID--------RQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCC--------TTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCC--------ccCCCCCEECCCCcC
Confidence 34667 787654443343 56667777776321 111234689999974
No 108
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=30.97 E-value=15 Score=36.96 Aligned_cols=52 Identities=25% Similarity=0.644 Sum_probs=34.4
Q ss_pred cccccccccCCCCCcEe----------ccCCCcc--------------------cHHhHHHhhhhHhHhcccCCCCCCcc
Q 022989 230 YDLTCAVCLDLVFNPYA----------LSCGHLF--------------------CKLCACSAASVMVFEGLKSASPDSKC 279 (289)
Q Consensus 230 ~~~~C~IC~~~~~~p~~----------l~CgH~F--------------------C~~Cl~~~~~~~~~~~~~~~~~~~~C 279 (289)
+--.|+-|+..+.+|.- +.||..| |..|..+.... ...+=+.+...|
T Consensus 105 D~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp---~dRRfhAqp~aC 181 (772)
T 4g9i_A 105 DIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDP---LNRRYHAEPTAC 181 (772)
T ss_dssp CCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCS---SSTTTTCTTCCC
T ss_pred chhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCC---CCCCCcCCCCCC
Confidence 56889999988887721 4688777 99998775310 111223456789
Q ss_pred ccccc
Q 022989 280 PICRE 284 (289)
Q Consensus 280 P~CR~ 284 (289)
|.|.=
T Consensus 182 ~~CGP 186 (772)
T 4g9i_A 182 PVCGP 186 (772)
T ss_dssp TTTSC
T ss_pred ccCCc
Confidence 99963
No 109
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=30.11 E-value=11 Score=34.67 Aligned_cols=54 Identities=19% Similarity=0.341 Sum_probs=0.0
Q ss_pred cccccccccCCCCCcEe----ccCCCcccHHhHHHhhhhHhHhcccCCCCCCcccccccccc
Q 022989 230 YDLTCAVCLDLVFNPYA----LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELA 287 (289)
Q Consensus 230 ~~~~C~IC~~~~~~p~~----l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 287 (289)
+...|.+|...+.--.. ..||+.||..|.......+ .........|-.|-..+.
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~----~~~~~~~rvC~~C~~~l~ 431 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLK----YLKDRMAKVCDGCFGELK 431 (434)
T ss_dssp --------------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCC----CCCCCcCEecHHHHHHHH
Confidence 45679999876642111 3799999999986543211 011123466877765543
No 110
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=29.70 E-value=17 Score=35.89 Aligned_cols=52 Identities=25% Similarity=0.507 Sum_probs=33.0
Q ss_pred cccccccccCCCCCcEe----------ccCCCcc--------------------cHHhHHHhhhhHhHhcccCCCCCCcc
Q 022989 230 YDLTCAVCLDLVFNPYA----------LSCGHLF--------------------CKLCACSAASVMVFEGLKSASPDSKC 279 (289)
Q Consensus 230 ~~~~C~IC~~~~~~p~~----------l~CgH~F--------------------C~~Cl~~~~~~~~~~~~~~~~~~~~C 279 (289)
+--.|+-|+..+.+|.- +.||..| |..|..+.-.. ...+=+.+...|
T Consensus 16 D~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp---~dRRfHAqp~aC 92 (657)
T 3ttc_A 16 DAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDP---LDRRFHAQPVAC 92 (657)
T ss_dssp CBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCT---TSTTTTCTTCCC
T ss_pred chhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCC---CCCcCcCCCCcC
Confidence 55778888877777621 4677766 99998775321 111223456789
Q ss_pred ccccc
Q 022989 280 PICRE 284 (289)
Q Consensus 280 P~CR~ 284 (289)
|.|.=
T Consensus 93 p~CGP 97 (657)
T 3ttc_A 93 PECGP 97 (657)
T ss_dssp TTTSC
T ss_pred cccCc
Confidence 99963
No 111
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=29.62 E-value=33 Score=24.36 Aligned_cols=45 Identities=22% Similarity=0.563 Sum_probs=32.4
Q ss_pred cccccccccCCCCCc-EeccCCCcccHHhHHHhhhhHhHhcccCCCCCCcccccccccc
Q 022989 230 YDLTCAVCLDLVFNP-YALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELA 287 (289)
Q Consensus 230 ~~~~C~IC~~~~~~p-~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 287 (289)
+-+.|..|...+... ....=|..||..|..+ ....+|..|..++.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~-------------~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTR-------------EDSPKCKGCFKAIV 77 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTT-------------CCCCBCSSSCCBCC
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhh-------------hcCCccccCCCccc
Confidence 458899998877643 2345678899999743 24568999988876
No 112
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=29.29 E-value=43 Score=24.96 Aligned_cols=47 Identities=17% Similarity=0.308 Sum_probs=31.1
Q ss_pred cccccccccCCCC---CcEeccCCCcccHHhHHHhhhhHhHhcccCCCCCCcccccccccc
Q 022989 230 YDLTCAVCLDLVF---NPYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELA 287 (289)
Q Consensus 230 ~~~~C~IC~~~~~---~p~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 287 (289)
+-+.|..|...+. .+....=|..+|..|..+.+. ....|+.|..++.
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~-----------~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG-----------QDGLCASCDKRIR 77 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHC-----------CCEECTTTCCEEC
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCC-----------CccChhhcCCccC
Confidence 5688999988774 244456678899999866431 1226777776654
No 113
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=29.11 E-value=55 Score=22.22 Aligned_cols=48 Identities=19% Similarity=0.368 Sum_probs=31.3
Q ss_pred ccccccccccCCC---CCcEec--cCCCcccHHhHHHhhhhHhHhcccCCCCCCcccccccc
Q 022989 229 EYDLTCAVCLDLV---FNPYAL--SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREE 285 (289)
Q Consensus 229 ~~~~~C~IC~~~~---~~p~~l--~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~ 285 (289)
.++..|.||.+.- .+.+.+ .|.-.|...|+... ....+...||.|+..
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~---------~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP---------YIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCS---------SCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCC---------cCCCCCcCCccCcCc
Confidence 4678899998652 233332 68888889998421 113456889999753
No 114
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=29.04 E-value=79 Score=21.81 Aligned_cols=30 Identities=27% Similarity=0.444 Sum_probs=15.7
Q ss_pred ccccccccCCCCC-cEeccCCCcccHHhHHH
Q 022989 231 DLTCAVCLDLVFN-PYALSCGHLFCKLCACS 260 (289)
Q Consensus 231 ~~~C~IC~~~~~~-p~~l~CgH~FC~~Cl~~ 260 (289)
-+.|..|...+.. .....=+..||..|..+
T Consensus 51 CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~ 81 (89)
T 1x64_A 51 CFVCADCNLNLKQKGYFFVEGELYCETHARA 81 (89)
T ss_dssp TCCCSSSCCCTTTSCCEEETTEEECHHHHHH
T ss_pred CCEecCCCCCCCCCCeEeECCEEECHHHHHH
Confidence 4566666655543 22233455666666544
No 115
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=28.34 E-value=27 Score=32.09 Aligned_cols=52 Identities=19% Similarity=0.379 Sum_probs=32.1
Q ss_pred cccccccccCCCCCcEe---ccCCCcccHHhHHHhhhhHhHhcccCCCCCCcccccc
Q 022989 230 YDLTCAVCLDLVFNPYA---LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICR 283 (289)
Q Consensus 230 ~~~~C~IC~~~~~~p~~---l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR 283 (289)
.+..|.+|-+--. =+. ..|...||..||.+.+......... ......|=+|.
T Consensus 92 ~~~yCr~C~~Gg~-l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~-~~d~W~Cf~C~ 146 (386)
T 2pv0_B 92 YQSYCSICCSGET-LLICGNPDCTRCYCFECVDSLVGPGTSGKVH-AMSNWVCYLCL 146 (386)
T ss_dssp SBCSCTTTCCCSS-CEECCSTTCCCEECHHHHHHHTCTTHHHHHH-HCSSCCCTTTS
T ss_pred CcccceEcCCCCe-EEEeCCCCCCcchHHHHHHHhcChhHHHHhh-ccCCceEEEcC
Confidence 4578999986332 111 2788999999998876322222221 13456787775
No 116
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=26.86 E-value=19 Score=36.09 Aligned_cols=52 Identities=21% Similarity=0.418 Sum_probs=33.4
Q ss_pred cccccccccCCCCCcEe----------ccCCCcc--------------------cHHhHHHhhhhHhHhcccCCCCCCcc
Q 022989 230 YDLTCAVCLDLVFNPYA----------LSCGHLF--------------------CKLCACSAASVMVFEGLKSASPDSKC 279 (289)
Q Consensus 230 ~~~~C~IC~~~~~~p~~----------l~CgH~F--------------------C~~Cl~~~~~~~~~~~~~~~~~~~~C 279 (289)
+--.|+-|+..+.+|.- +.||..| |..|..+.-.. ...+=+.....|
T Consensus 110 D~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp---~~RRfhAqp~aC 186 (761)
T 3vth_A 110 DMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDP---HDRRFHAQPVAC 186 (761)
T ss_dssp CBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCT---TSTTTTCTTCCC
T ss_pred CccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCc---ccccccCCCCcC
Confidence 56889999988877621 4677655 99998775310 011123355789
Q ss_pred ccccc
Q 022989 280 PICRE 284 (289)
Q Consensus 280 P~CR~ 284 (289)
|.|.=
T Consensus 187 ~~CGP 191 (761)
T 3vth_A 187 FDCGP 191 (761)
T ss_dssp TTTSC
T ss_pred CccCC
Confidence 99963
No 117
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=26.54 E-value=53 Score=23.29 Aligned_cols=49 Identities=18% Similarity=0.347 Sum_probs=31.3
Q ss_pred ccccccccccCCC-CC--cEec--cCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccccc
Q 022989 229 EYDLTCAVCLDLV-FN--PYAL--SCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREEL 286 (289)
Q Consensus 229 ~~~~~C~IC~~~~-~~--p~~l--~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~ 286 (289)
.++..|.||...- .+ .+++ .|.-.|...|+... ....+...||.|....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~---------~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP---------YIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCS---------SCCSSCCCCHHHHHHT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCC---------ccCCCceECccccCcc
Confidence 4678999998753 12 2222 67778888998421 1134578899997543
No 118
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=26.14 E-value=21 Score=27.74 Aligned_cols=48 Identities=21% Similarity=0.417 Sum_probs=30.2
Q ss_pred cccccccccCCCC---CcEe--ccCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccc
Q 022989 230 YDLTCAVCLDLVF---NPYA--LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICRE 284 (289)
Q Consensus 230 ~~~~C~IC~~~~~---~p~~--l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~ 284 (289)
..-.|.+|...+. ++-. ..|.|.+|..|-... ..........|-+|+.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~-------~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVET-------SNNRPHPVWLCKICLE 106 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEEC-------CCSSSSCCEEEHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCcc-------CCCCCccceechhhHH
Confidence 3578999998762 2222 579999999995321 0011234577888874
No 119
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=25.76 E-value=4.3 Score=28.90 Aligned_cols=10 Identities=40% Similarity=1.036 Sum_probs=6.2
Q ss_pred cccccccCCC
Q 022989 232 LTCAVCLDLV 241 (289)
Q Consensus 232 ~~C~IC~~~~ 241 (289)
..||.|...+
T Consensus 3 ~~CP~C~~~l 12 (81)
T 2jrp_A 3 ITCPVCHHAL 12 (81)
T ss_dssp CCCSSSCSCC
T ss_pred CCCCCCCCcc
Confidence 5677776543
No 120
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=25.55 E-value=1.2e+02 Score=20.47 Aligned_cols=48 Identities=19% Similarity=0.430 Sum_probs=29.0
Q ss_pred cccccccccCCCCCcEec--c--CC-CcccHHhHHHhhhhHhHhcccCCCCCCcccccccccc
Q 022989 230 YDLTCAVCLDLVFNPYAL--S--CG-HLFCKLCACSAASVMVFEGLKSASPDSKCPICREELA 287 (289)
Q Consensus 230 ~~~~C~IC~~~~~~p~~l--~--Cg-H~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 287 (289)
+...| ||........+. . |. .-|...|+.- .....+...||.|+..-.
T Consensus 15 ~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl---------~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 15 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGL---------TTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp SCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTTC---------SSCCSSCCCCTTTSSCSS
T ss_pred CCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCCc---------CcCCCCCEECCCCCcccc
Confidence 56778 898865443322 3 54 4688888731 111236688999986543
No 121
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=25.33 E-value=50 Score=20.48 Aligned_cols=46 Identities=22% Similarity=0.485 Sum_probs=26.2
Q ss_pred ccccccCCCCC-cEe--ccCCCcccHHhHHHhhhhHhHhcccCCCCCCcccccccc
Q 022989 233 TCAVCLDLVFN-PYA--LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREE 285 (289)
Q Consensus 233 ~C~IC~~~~~~-p~~--l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~ 285 (289)
.|.||...-.. .+. -.|...|...|+..-. . ....+...||.|+..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l-----~--~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPAL-----Y--EVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTC-----C--SCCSSCCSCTTTSCC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCc-----C--CCCCCcEECcCcccc
Confidence 37777753321 122 2677788899984321 1 112356789999753
No 122
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=25.06 E-value=15 Score=20.03 Aligned_cols=13 Identities=23% Similarity=0.882 Sum_probs=9.9
Q ss_pred cccccccccCCCC
Q 022989 230 YDLTCAVCLDLVF 242 (289)
Q Consensus 230 ~~~~C~IC~~~~~ 242 (289)
....||+|++.+.
T Consensus 5 f~vqcpvcqq~mp 17 (29)
T 3vhs_A 5 FQVQCPVCQQMMP 17 (29)
T ss_dssp CEEECTTTCCEEE
T ss_pred eeeeChHHHHhCc
Confidence 4578999998654
No 123
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=24.67 E-value=14 Score=27.26 Aligned_cols=10 Identities=60% Similarity=1.474 Sum_probs=5.4
Q ss_pred Cccccccccc
Q 022989 277 SKCPICREEL 286 (289)
Q Consensus 277 ~~CP~CR~~~ 286 (289)
..||+|.+++
T Consensus 48 ~~CPvCgs~l 57 (112)
T 1l8d_A 48 GKCPVCGREL 57 (112)
T ss_dssp EECTTTCCEE
T ss_pred CCCCCCCCcC
Confidence 4466665544
No 124
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=24.16 E-value=38 Score=26.87 Aligned_cols=45 Identities=27% Similarity=0.596 Sum_probs=29.9
Q ss_pred cccccccccCCC---CCcEe--ccCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccc
Q 022989 230 YDLTCAVCLDLV---FNPYA--LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICRE 284 (289)
Q Consensus 230 ~~~~C~IC~~~~---~~p~~--l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~ 284 (289)
..-.|.+|...+ .++-. ..|.|.+|..|-.. . .......|-+|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~---------~-~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHA---------H-PEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEEC---------C-SSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccccc---------c-CCCCcEeeHHHHH
Confidence 467899999854 23322 57999999999521 1 1235678888864
No 125
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.62 E-value=62 Score=21.80 Aligned_cols=29 Identities=14% Similarity=0.269 Sum_probs=12.5
Q ss_pred cccccccCCCCC-cEeccCCCcccHHhHHH
Q 022989 232 LTCAVCLDLVFN-PYALSCGHLFCKLCACS 260 (289)
Q Consensus 232 ~~C~IC~~~~~~-p~~l~CgH~FC~~Cl~~ 260 (289)
+.|..|...+.. .....=+..||..|..+
T Consensus 42 F~C~~C~~~L~~~~~~~~~g~~yC~~cy~~ 71 (79)
T 1x62_A 42 YVCTDCGTNLKQKGHFFVEDQIYCEKHARE 71 (79)
T ss_dssp TSCSSSCCCHHHHCCEESSSCEECHHHHHH
T ss_pred CeeCCCCCCCCCCCeEeECCEEECHHHHHH
Confidence 455555544332 11223344555555543
No 126
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=23.56 E-value=40 Score=26.97 Aligned_cols=51 Identities=18% Similarity=0.365 Sum_probs=32.0
Q ss_pred cccccccccCCCCCcEe----ccCCCcccHHhHHHhhhhHhHhcccCCCCCCcccccc
Q 022989 230 YDLTCAVCLDLVFNPYA----LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICR 283 (289)
Q Consensus 230 ~~~~C~IC~~~~~~p~~----l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR 283 (289)
.+..|.||-+-- -+. ..|...||..||...+......... ......|=+|.
T Consensus 78 ~~~yC~wC~~Gg--~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~-~~d~W~Cy~C~ 132 (159)
T 3a1b_A 78 YQSYCTICCGGR--EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAI-KEDPWNCYMCG 132 (159)
T ss_dssp SBSSCTTTSCCS--EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHH-TSSSCCCTTTC
T ss_pred CcceeeEecCCC--eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHh-ccCCCEEEecC
Confidence 457899998732 122 1588899999998876433333221 23556787775
No 127
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=22.89 E-value=1.1e+02 Score=21.80 Aligned_cols=48 Identities=19% Similarity=0.485 Sum_probs=29.1
Q ss_pred ccccccccccCCCCCcEecc-----CC-CcccHHhHHHhhhhHhHhcccCCCCCCcccccccccc
Q 022989 229 EYDLTCAVCLDLVFNPYALS-----CG-HLFCKLCACSAASVMVFEGLKSASPDSKCPICREELA 287 (289)
Q Consensus 229 ~~~~~C~IC~~~~~~p~~l~-----Cg-H~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 287 (289)
.+...| ||....... ++. |. .-|...|+.- .........||.|+..-.
T Consensus 34 ~e~~yC-iC~~~~~g~-MI~CD~~dC~~~WfH~~CVgl---------~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 34 NEPTYC-LCHQVSYGE-MIGCDNPDCSIEWFHFACVGL---------TTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCCBCS-TTCCBCCSC-CCCCSCSSCSCCCCCSTTTTC---------SSCCCSSCCCTTTCCCCS
T ss_pred CCCcEE-ECCCCCCCC-EeEecCCCCCCCCEecccCCc---------CcCCCCCEECcCccCcCC
Confidence 355778 998865443 443 44 3577888731 111235689999987543
No 128
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=22.88 E-value=89 Score=22.26 Aligned_cols=32 Identities=22% Similarity=0.376 Sum_probs=23.0
Q ss_pred ccccccccccCCCCCcEec---cCCCcccHHhHHHh
Q 022989 229 EYDLTCAVCLDLVFNPYAL---SCGHLFCKLCACSA 261 (289)
Q Consensus 229 ~~~~~C~IC~~~~~~p~~l---~CgH~FC~~Cl~~~ 261 (289)
..+..|+||-..-.+ ..+ -|+-.|...|+.+.
T Consensus 13 ~~D~~C~VC~~~t~~-~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEVWTAE-SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCCCCSS-CCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCcccccccc-ceeccccccccccHhhcccc
Confidence 468899999754333 233 47889999999774
No 129
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=22.83 E-value=20 Score=25.01 Aligned_cols=14 Identities=36% Similarity=1.013 Sum_probs=12.0
Q ss_pred cCCCcccHHhHHHh
Q 022989 248 SCGHLFCKLCACSA 261 (289)
Q Consensus 248 ~CgH~FC~~Cl~~~ 261 (289)
.||+.||..|...|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 69999999998655
No 130
>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=21.63 E-value=21 Score=20.75 Aligned_cols=14 Identities=36% Similarity=0.907 Sum_probs=11.2
Q ss_pred ccCCCcccHHhHHH
Q 022989 247 LSCGHLFCKLCACS 260 (289)
Q Consensus 247 l~CgH~FC~~Cl~~ 260 (289)
.+|.|+.|..|--.
T Consensus 10 ascehtmcgycqgp 23 (40)
T 1erd_A 10 ASCEHTMCGYCQGP 23 (40)
T ss_dssp HHTCGGGGGGSCHH
T ss_pred HhccccccccccCC
Confidence 57999999998543
No 131
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=21.58 E-value=30 Score=27.91 Aligned_cols=47 Identities=15% Similarity=0.359 Sum_probs=30.4
Q ss_pred cccccccccCCCCC---cEeccCCCcccHHhHHHhhhhHhHhcccCCCCCCcccccccccc
Q 022989 230 YDLTCAVCLDLVFN---PYALSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREELA 287 (289)
Q Consensus 230 ~~~~C~IC~~~~~~---p~~l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 287 (289)
+-+.|..|...+.. +....=|..||..|..+.+. ....|+.|..++.
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~-----------~~~~C~~C~~~I~ 80 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG-----------NSGACSACGQSIP 80 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHS-----------CCEECTTTCCEEC
T ss_pred cCcccCCCCcccccCCceEEEeCCccccccccccccc-----------cCCccccCCCccc
Confidence 56888899887653 44455678899999765431 1125777766654
No 132
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.36 E-value=1e+02 Score=20.76 Aligned_cols=31 Identities=23% Similarity=0.383 Sum_probs=21.3
Q ss_pred cccccccccCCCCCcEeccCCCcccHHhHHH
Q 022989 230 YDLTCAVCLDLVFNPYALSCGHLFCKLCACS 260 (289)
Q Consensus 230 ~~~~C~IC~~~~~~p~~l~CgH~FC~~Cl~~ 260 (289)
+-+.|..|...+.......=|..||..|..+
T Consensus 40 ~CF~C~~C~~~L~~~~f~~~g~~yC~~cy~~ 70 (79)
T 2cor_A 40 DHFNCANCGKELTADARELKGELYCLPCHDK 70 (79)
T ss_dssp TTSBCSSSCCBCCTTCEEETTEEECHHHHHT
T ss_pred CCCEeCCCCCccCCCCEeECCEEeCHHHHHH
Confidence 4588888887666543344567889988754
No 133
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=20.73 E-value=59 Score=20.93 Aligned_cols=10 Identities=20% Similarity=0.580 Sum_probs=4.5
Q ss_pred ccccccCCCC
Q 022989 233 TCAVCLDLVF 242 (289)
Q Consensus 233 ~C~IC~~~~~ 242 (289)
.|+.|...+.
T Consensus 7 ~C~~C~~~I~ 16 (66)
T 1nyp_A 7 ICGACRRPIE 16 (66)
T ss_dssp EETTTTEECC
T ss_pred CCcccCCEec
Confidence 4444444443
No 134
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=20.66 E-value=50 Score=24.25 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=12.1
Q ss_pred cccHHhHHHhhhhHhH
Q 022989 252 LFCKLCACSAASVMVF 267 (289)
Q Consensus 252 ~FC~~Cl~~~~~~~~~ 267 (289)
.||..|+.+|+...+.
T Consensus 42 GFCRNCLskWy~~aA~ 57 (105)
T 2o35_A 42 GFCRNCLSNWYREAAE 57 (105)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4999999999854443
No 135
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=20.33 E-value=30 Score=24.30 Aligned_cols=14 Identities=29% Similarity=0.721 Sum_probs=11.5
Q ss_pred cCCCcccHHhHHHh
Q 022989 248 SCGHLFCKLCACSA 261 (289)
Q Consensus 248 ~CgH~FC~~Cl~~~ 261 (289)
.|++.||..|-..|
T Consensus 48 ~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 48 QCHQTFCVRCKRQW 61 (86)
T ss_dssp TTCCEECSSSCSBC
T ss_pred CCCCccccccCCch
Confidence 59999999997554
No 136
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=20.23 E-value=42 Score=21.95 Aligned_cols=48 Identities=19% Similarity=0.298 Sum_probs=28.8
Q ss_pred cccccccccCCCCCcEe--ccCCCcccHHhHHHhhhhHhHhcccCCCCCCccccccccc
Q 022989 230 YDLTCAVCLDLVFNPYA--LSCGHLFCKLCACSAASVMVFEGLKSASPDSKCPICREEL 286 (289)
Q Consensus 230 ~~~~C~IC~~~~~~p~~--l~CgH~FC~~Cl~~~~~~~~~~~~~~~~~~~~CP~CR~~~ 286 (289)
.+..|.||.+. .-+. -.|...|...|+.... .....+...||.|+...
T Consensus 8 ~~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~ppl-------~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 8 HMEFCRVCKDG--GELLCCDTCPSSYHIHCLNPPL-------PEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCTTTCCC--SSCBCCSSSCCCBCSSSSSSCC-------SSCCSSCCCCTTTTTTC
T ss_pred CCCcCCCCCCC--CCEEEcCCCCHHHcccccCCCc-------CcCCCCccCChhhcCch
Confidence 46778999862 1222 2577778888874321 11123567899998653
No 137
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.09 E-value=50 Score=21.57 Aligned_cols=13 Identities=23% Similarity=0.728 Sum_probs=7.5
Q ss_pred CCCcccHHhHHHh
Q 022989 249 CGHLFCKLCACSA 261 (289)
Q Consensus 249 CgH~FC~~Cl~~~ 261 (289)
-|..||..|..+.
T Consensus 50 ~g~~yC~~c~~~~ 62 (70)
T 2d8x_A 50 AGRHLCRPCHNRE 62 (70)
T ss_dssp TTEEECHHHHHHH
T ss_pred CCeEECHHHhhhh
Confidence 4556666666443
Done!