BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022991
         (289 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1S5L|C Chain C, Architecture Of The Photosynthetic Oxygen Evolving Center
 pdb|1S5L|CC Chain c, Architecture Of The Photosynthetic Oxygen Evolving Center
 pdb|1W5C|C Chain C, Photosystem Ii From Thermosynechococcus Elongatus
 pdb|1W5C|I Chain I, Photosystem Ii From Thermosynechococcus Elongatus
 pdb|2AXT|C Chain C, Crystal Structure Of Photosystem Ii From
           Thermosynechococcus Elongatus
 pdb|2AXT|CC Chain c, Crystal Structure Of Photosystem Ii From
           Thermosynechococcus Elongatus
 pdb|3BZ1|C Chain C, Crystal Structure Of Cyanobacterial Photosystem Ii (Part 1
           Of 2). This File Contains First Monomer Of Psii Dimer
 pdb|3BZ2|C Chain C, Crystal Structure Of Cyanobacterial Photosystem Ii (Part 2
           Of 2). This File Contains Second Monomer Of Psii Dimer
          Length = 473

 Score = 27.7 bits (60), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%)

Query: 43  GIPNTLNVVSNFPFLVIGIVGL----VLCFHGNYFNLRLQGELWGWACFF 88
           G+     VV  FPF V+G+V L    VL F G Y  +R    L  ++ FF
Sbjct: 98  GVGPGGEVVDTFPFFVVGVVHLISSAVLGFGGVYHAIRGPETLEEYSSFF 147


>pdb|3KZI|C Chain C, Crystal Structure Of Monomeric Form Of Cyanobacterial
           Photosystem Ii
 pdb|3PRQ|C Chain C, Crystal Structure Of Cyanobacterial Photosystem Ii In
           Complex With Terbutryn (Part 1 Of 2). This File Contains
           First Monomer Of Psii Dimer
 pdb|3PRR|C Chain C, Crystal Structure Of Cyanobacterial Photosystem Ii In
           Complex With Terbutryn (Part 2 Of 2). This File Contains
           Second Monomer Of Psii Dimer
 pdb|4FBY|C Chain C, Fs X-Ray Diffraction Of Photosystem Ii
 pdb|4FBY|P Chain P, Fs X-Ray Diffraction Of Photosystem Ii
 pdb|4IXQ|C Chain C, Rt Fs X-ray Diffraction Of Photosystem Ii, Dark State
 pdb|4IXQ|CC Chain c, Rt Fs X-ray Diffraction Of Photosystem Ii, Dark State
 pdb|4IXR|C Chain C, Rt Fs X-ray Diffraction Of Photosystem Ii, First
           Illuminated State
 pdb|4IXR|CC Chain c, Rt Fs X-ray Diffraction Of Photosystem Ii, First
           Illuminated State
          Length = 461

 Score = 27.7 bits (60), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%)

Query: 43  GIPNTLNVVSNFPFLVIGIVGL----VLCFHGNYFNLRLQGELWGWACFF 88
           G+     VV  FPF V+G+V L    VL F G Y  +R    L  ++ FF
Sbjct: 86  GVGPGGEVVDTFPFFVVGVVHLISSAVLGFGGVYHAIRGPETLEEYSSFF 135


>pdb|3A0B|C Chain C, Crystal Structure Of Br-Substituted Photosystem Ii Complex
 pdb|3A0B|CC Chain c, Crystal Structure Of Br-Substituted Photosystem Ii Complex
 pdb|3A0H|C Chain C, Crystal Structure Of I-Substituted Photosystem Ii Complex
 pdb|3A0H|CC Chain c, Crystal Structure Of I-Substituted Photosystem Ii Complex
          Length = 447

 Score = 27.7 bits (60), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%)

Query: 43  GIPNTLNVVSNFPFLVIGIVGL----VLCFHGNYFNLRLQGELWGWACFF 88
           G+     VV  FPF V+G+V L    VL F G Y  +R    L  ++ FF
Sbjct: 72  GVGPGGEVVDTFPFFVVGVVHLISSAVLGFGGVYHAIRGPETLEEYSSFF 121


>pdb|1IZL|C Chain C, Crystal Structure Of Photosystem Ii
 pdb|1IZL|M Chain M, Crystal Structure Of Photosystem Ii
          Length = 473

 Score = 27.7 bits (60), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%)

Query: 43  GIPNTLNVVSNFPFLVIGIVGL----VLCFHGNYFNLRLQGELWGWACFF 88
           G+     VV  FPF V+G+V L    VL F G Y  +R    L  ++ FF
Sbjct: 98  GVGPGGEVVDTFPFFVVGVVHLISSAVLGFGGVYHAIRGPETLEEYSSFF 147


>pdb|3ARC|C Chain C, Crystal Structure Of Oxygen-Evolving Photosystem Ii At 1.9
           Angstrom Resolution
 pdb|3ARC|CC Chain c, Crystal Structure Of Oxygen-Evolving Photosystem Ii At 1.9
           Angstrom Resolution
          Length = 455

 Score = 27.3 bits (59), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%)

Query: 43  GIPNTLNVVSNFPFLVIGIVGL----VLCFHGNYFNLRLQGELWGWACFF 88
           G+     VV  FPF V+G+V L    VL F G Y  +R    L  ++ FF
Sbjct: 80  GVGPGGEVVDTFPFFVVGVVHLISSAVLGFGGVYHAIRGPETLEEYSSFF 129


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.141    0.466 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,313,786
Number of Sequences: 62578
Number of extensions: 315132
Number of successful extensions: 650
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 649
Number of HSP's gapped (non-prelim): 7
length of query: 289
length of database: 14,973,337
effective HSP length: 98
effective length of query: 191
effective length of database: 8,840,693
effective search space: 1688572363
effective search space used: 1688572363
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)