Query 022991
Match_columns 289
No_of_seqs 113 out of 133
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 07:39:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022991.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022991hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05875 Ceramidase: Ceramidas 100.0 2.2E-35 4.7E-40 271.5 19.3 200 42-252 22-244 (262)
2 KOG2329 Alkaline ceramidase [L 99.8 1.9E-19 4E-24 166.9 9.9 202 43-255 31-251 (276)
3 PF03006 HlyIII: Haemolysin-II 98.0 0.00022 4.8E-09 63.1 15.0 190 45-237 5-220 (222)
4 PF13965 SID-1_RNA_chan: dsRNA 97.9 0.0013 2.9E-08 67.8 20.0 111 26-136 253-368 (570)
5 PF04080 Per1: Per1-like ; In 97.7 0.0028 6E-08 59.7 17.4 209 23-240 34-260 (267)
6 PRK15087 hemolysin; Provisiona 97.5 0.012 2.5E-07 53.7 17.8 184 44-239 14-209 (219)
7 TIGR01065 hlyIII channel prote 97.5 0.0095 2.1E-07 53.5 16.4 182 46-237 2-195 (204)
8 KOG2970 Predicted membrane pro 96.8 0.077 1.7E-06 50.8 16.0 203 24-236 85-300 (319)
9 COG1272 Predicted membrane pro 96.2 0.24 5.2E-06 45.8 14.8 189 45-240 20-217 (226)
10 PF12036 DUF3522: Protein of u 95.1 0.33 7.1E-06 43.3 11.1 63 48-126 10-78 (186)
11 COG5237 PER1 Predicted membran 91.2 6.3 0.00014 37.4 13.1 198 31-239 86-303 (319)
12 PF14325 DUF4383: Domain of un 90.1 3.7 8E-05 34.5 9.7 85 6-99 5-93 (125)
13 TIGR02459 CbtB cobalt transpor 76.9 1.5 3.2E-05 32.7 1.4 24 23-46 35-59 (60)
14 KOG4243 Macrophage maturation- 73.3 0.77 1.7E-05 42.9 -1.0 174 44-235 84-277 (298)
15 PF15100 TMEM187: TMEM187 prot 66.4 1.2E+02 0.0025 28.6 20.6 204 23-239 21-237 (242)
16 PF09489 CbtB: Probable cobalt 64.2 4 8.6E-05 29.8 1.3 26 21-46 27-53 (54)
17 PF04973 NMN_transporter: Nico 64.1 71 0.0015 27.8 9.5 86 43-128 42-131 (181)
18 KOG0748 Predicted membrane pro 55.5 80 0.0017 30.1 8.9 47 191-240 212-264 (286)
19 TIGR02235 menA_cyano-plnt 1,4- 48.2 2.4E+02 0.0053 26.6 13.8 49 79-128 133-181 (285)
20 PLN02922 prenyltransferase 46.0 2.8E+02 0.0061 26.7 13.2 51 78-129 149-209 (315)
21 PRK07419 1,4-dihydroxy-2-napht 45.7 2.8E+02 0.0061 26.6 14.2 40 27-66 65-113 (304)
22 COG3714 Predicted membrane pro 42.4 2.8E+02 0.0061 25.6 16.2 152 87-248 56-211 (212)
23 KOG3011 Ubiquitin-conjugating 41.8 36 0.00078 32.4 4.1 33 83-117 109-141 (293)
24 TIGR00751 menA 1,4-dihydroxy-2 39.7 3.3E+02 0.0072 25.7 12.9 42 84-126 141-182 (284)
25 TIGR01528 NMN_trans_PnuC nicot 38.1 1E+02 0.0022 27.3 6.3 105 45-158 45-157 (189)
26 PF06197 DUF998: Protein of un 37.5 2.5E+02 0.0054 23.6 12.7 23 83-107 73-95 (184)
27 PRK09561 nhaA pH-dependent sod 34.0 5E+02 0.011 26.1 15.2 149 9-165 15-182 (388)
28 PF01578 Cytochrom_C_asm: Cyto 33.6 3.3E+02 0.0072 23.9 12.5 32 36-67 66-97 (214)
29 KOG0569 Permease of the major 33.4 5.5E+02 0.012 26.4 12.0 134 117-255 71-213 (485)
30 TIGR03663 conserved hypothetic 31.3 4.3E+02 0.0094 26.6 10.2 72 51-130 270-341 (439)
31 PF07695 7TMR-DISM_7TM: 7TM di 29.4 3.4E+02 0.0073 22.7 17.9 26 184-209 146-171 (205)
32 PRK15487 O-antigen ligase RfaL 29.3 5.7E+02 0.012 25.3 16.4 19 50-68 32-50 (400)
33 PF12129 Phtf-FEM1B_bdg: Male 28.8 3.9E+02 0.0084 23.7 8.1 86 97-183 56-143 (159)
34 PHA03242 envelope glycoprotein 25.5 3.3E+02 0.0071 27.8 8.0 11 276-286 405-415 (428)
35 PF09930 DUF2162: Predicted tr 25.3 2E+02 0.0044 26.5 6.1 49 192-243 38-86 (224)
36 COG3014 Uncharacterized protei 25.0 22 0.00048 35.4 -0.2 20 33-52 380-399 (449)
37 PF12911 OppC_N: N-terminal TM 22.3 49 0.0011 23.0 1.2 25 2-26 13-38 (56)
38 PF10131 PTPS_related: 6-pyruv 21.4 6.3E+02 0.014 26.7 9.6 38 99-136 244-282 (616)
39 PHA03237 envelope glycoprotein 20.8 4.9E+02 0.011 26.5 8.2 51 192-242 292-343 (424)
40 cd01206 Homer Homer type EVH1 20.5 40 0.00087 28.1 0.4 17 28-44 70-88 (111)
41 PF06679 DUF1180: Protein of u 20.3 1.2E+02 0.0026 26.8 3.4 43 230-273 105-151 (163)
42 TIGR02327 int_mem_ywzB conserv 20.0 2.7E+02 0.0059 21.1 4.9 23 49-71 3-25 (68)
No 1
>PF05875 Ceramidase: Ceramidase; InterPro: IPR008901 This entry consists of several ceramidases. Ceramidases are enzymes involved in regulating cellular levels of ceramides, sphingoid bases, and their phosphates.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0006672 ceramide metabolic process, 0016021 integral to membrane
Probab=100.00 E-value=2.2e-35 Score=271.51 Aligned_cols=200 Identities=19% Similarity=0.222 Sum_probs=150.0
Q ss_pred cCCchhhHhhhhHHHHHHHHHHHHHHHhccccccccchhhhHHHHHHHHHHHHHHhhhhhcCCCCCchhhhhhhhHHHHH
Q 022991 42 FGIPNTLNVVSNFPFLVIGIVGLVLCFHGNYFNLRLQGELWGWACFFIGVAAVGVGSSYYHLEPNDARLVWDRLPMTIAF 121 (289)
Q Consensus 42 ~gIpn~~NvlSNlpFl~~gl~Gl~~~~~~~~~~~~~~~~~~~~~lff~Gl~lvG~GSayyHl~p~~~~llwDrLPM~iaf 121 (289)
--|+|++||+||++|+++|++|++.+++++ +..++.++++|+++||+||++||+++++++|++||+||++++
T Consensus 22 ~yiAEf~NtlSNl~fi~~al~gl~~~~~~~--------~~~~~~l~~~~l~~VGiGS~~FHaTl~~~~ql~DelPMl~~~ 93 (262)
T PF05875_consen 22 PYIAEFWNTLSNLAFIVAALYGLYLARRRG--------LERRFALLYLGLALVGIGSFLFHATLSYWTQLLDELPMLWAT 93 (262)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhhcc--------ccchhHHHHHHHHHHHHhHHHHHhChhhhHHHhhhhhHHHHH
Confidence 349999999999999999999998766532 355788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-ccchhhHHHHHHHHHHHHHhhhhhccCCccchhhhh-------hHHHHHHHHHHHH-cC---CCCch
Q 022991 122 TSIIAIFIIERI-DEHKGTVSLIPLLLAGVVSILYWSFFDDLRPYALVQ-------FVPCIAIPLMAIL-LP---PMYTH 189 (289)
Q Consensus 122 ~~l~~~~~~erv-~~r~g~~~l~~Ll~~g~~sv~yw~~~~dlrpy~~vQ-------~~p~l~i~~~~~~-~~---~~~~~ 189 (289)
+.+++..+.++. +.+.+......+..++.++..+....++ ...+| +..++........ .+ .+...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~t~~~~~~~~---p~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (262)
T PF05875_consen 94 LLFLYIVLTRRYSSPRYRLALPLLLFIYAVVVTVLYFVLDN---PVFHQIAFASLVLLVILRSIYLIRRRVRDACRRRRA 170 (262)
T ss_pred HHHHHHHhcccccCchhhHHHHHHHHHHHHHHHHHHhhhcc---chhhhhhHHHHHHHHHHHHHHHHHHhcCchhhchHH
Confidence 999999999999 5555554444555545444434433233 23333 1111111111111 11 12233
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHhhcc-----------cccccchHHHHHHhHHHHHHHHHHHhhhhccccc
Q 022991 190 STYWLWAAGFYLLAKVEEAMDKPIYRWTH-----------HIVSGHTLKHLCAAMVPVFLTLMLAKRTIETERV 252 (289)
Q Consensus 190 ~~~~~~a~~~yllAk~~e~~D~~ic~~~~-----------~llsGHsLwHLlaAl~~~~l~~~l~~r~~~~~~~ 252 (289)
.+....++++|++|+++|++|+.+|+... .++|||+|||+++|++.|+..+..++.+...|..
T Consensus 171 ~~l~~~~~~~f~~a~~~W~iD~~~C~~~~~~~~~~g~p~~~~le~H~~WHilt~ig~Y~~~~~~~~~~~~~~~~ 244 (262)
T PF05875_consen 171 RRLLLFGLALFLVAFFFWNIDRIFCSSLRAIRFPYGLPLGFLLELHAWWHILTGIGAYLLIVFVAYLRALYEGP 244 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHccccccccccCCcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 57788999999999999999999999653 3568999999999999999999887765555433
No 2
>KOG2329 consensus Alkaline ceramidase [Lipid transport and metabolism]
Probab=99.80 E-value=1.9e-19 Score=166.90 Aligned_cols=202 Identities=17% Similarity=0.083 Sum_probs=127.3
Q ss_pred CCchhhHhhhhHHHHHHHHHHHHHHHhccccccccchhhhHHHHHHHHHHHHHHhhhhhcCCCCCchhhhhhhhHHHHHH
Q 022991 43 GIPNTLNVVSNFPFLVIGIVGLVLCFHGNYFNLRLQGELWGWACFFIGVAAVGVGSSYYHLEPNDARLVWDRLPMTIAFT 122 (289)
Q Consensus 43 gIpn~~NvlSNlpFl~~gl~Gl~~~~~~~~~~~~~~~~~~~~~lff~Gl~lvG~GSayyHl~p~~~~llwDrLPM~iaf~ 122 (289)
-|+||.||.||+||++.+.+|+.. ..++ ....++.+..++.+.+|+||.|||+||+...|+.||+||...+.
T Consensus 31 yIAEf~NT~sN~~fil~~~~~l~~-~y~~-------~~e~~~~l~~v~~~ivgl~S~~fH~TL~~~~QllDElamiw~i~ 102 (276)
T KOG2329|consen 31 YIAEFANTESNSPFILLAFIGLHC-AYRQ-------KLEKRAYLICVLFTIVGLGSMYFHMTLVYKGQLLDELAMIWEIP 102 (276)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHH-HHHH-------HhhhhHHHHHHHHHHHHHHHhhhhhhHHHhheehhhhhHHHHHH
Confidence 399999999999999999999854 3333 13457889999999999999999999999999999999999333
Q ss_pred HHHHHHHHHHhccchh-----hHHHHHHHHHHHHHhhhhhcc-CCccchhhhhhHHHHHHHHHHHHcC--CCCchhHHHH
Q 022991 123 SIIAIFIIERIDEHKG-----TVSLIPLLLAGVVSILYWSFF-DDLRPYALVQFVPCIAIPLMAILLP--PMYTHSTYWL 194 (289)
Q Consensus 123 ~l~~~~~~erv~~r~g-----~~~l~~Ll~~g~~sv~yw~~~-~dlrpy~~vQ~~p~l~i~~~~~~~~--~~~~~~~~~~ 194 (289)
. +....+.-..... +....-+++...+++.+...- .+...++..-+.+.++++.+-.... .+..+.-...
T Consensus 103 ~--~~~~cy~p~~~~~~~~~~~~tF~~~~~~~avt~~~l~~~~p~~n~v~~~~~s~~v~v~~~~~~~~~~~~~~r~l~~~ 180 (276)
T KOG2329|consen 103 L--VSLLCYFPKFLVKETFSKRLTFILVLLILAVTIVGLSFLEPIVNAVALGFFSLPVAVVSMYEYYIHVNDAKRNLGAT 180 (276)
T ss_pred H--HHHhhcchhhhccccccchhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhhheeeccHhHhccCce
Confidence 3 3333322221111 111112222333332332211 1211122211222233333333332 1111111111
Q ss_pred HHHHHHHHHHHHHhcCHHHHhhc-----------ccccccchHHHHHHhHHHHHHHHHHHhhhhcccccccc
Q 022991 195 WAAGFYLLAKVEEAMDKPIYRWT-----------HHIVSGHTLKHLCAAMVPVFLTLMLAKRTIETERVSLL 255 (289)
Q Consensus 195 ~a~~~yllAk~~e~~D~~ic~~~-----------~~llsGHsLwHLlaAl~~~~l~~~l~~r~~~~~~~~~~ 255 (289)
+....+.|..+|..|+..|+.. |..+.+|+|||++++++.|....++.+-+..+-|..+-
T Consensus 181 -~~i~~~v~~~~w~~D~~~c~f~~~~~~~l~~~~gi~l~~~a~Whv~s~~~~y~~~~~~~~~~~~~~~~~~~ 251 (276)
T KOG2329|consen 181 -GVILWLVGFIFWFLDRLLCSFWLRLRRYLALPLGILLELHAWWHVLTSIGSYRTITFLLYDRVLYLPGEPK 251 (276)
T ss_pred -eeeehhhhcchhhhhHHHHHHHHHhhhhhccHHHHHHHHHHHHhheecCChhHHHHHHHHhHHhccCCCCC
Confidence 6778888999999999999842 33468999999999999999988877766555555443
No 3
>PF03006 HlyIII: Haemolysin-III related; InterPro: IPR004254 Members of this family are integral membrane proteins. This family includes proteins that are hemolysin-III homologs.; GO: 0016021 integral to membrane
Probab=98.03 E-value=0.00022 Score=63.11 Aligned_cols=190 Identities=15% Similarity=0.094 Sum_probs=103.0
Q ss_pred chhhHhhhhHHHHHHHHHHHHHHHhccccccccchhhhHHHHHHHHHHHHHHhhhhhcCCCC-------CchhhhhhhhH
Q 022991 45 PNTLNVVSNFPFLVIGIVGLVLCFHGNYFNLRLQGELWGWACFFIGVAAVGVGSSYYHLEPN-------DARLVWDRLPM 117 (289)
Q Consensus 45 pn~~NvlSNlpFl~~gl~Gl~~~~~~~~~~~~~~~~~~~~~lff~Gl~lvG~GSayyHl~p~-------~~~llwDrLPM 117 (289)
-|.+|+.|++.=.+..+............+...+.+.+...++..+....-..|+.||+... +..+-.|...+
T Consensus 5 NEt~NiwtHll~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~St~yH~f~~~s~~~~~~~~~~lD~~gI 84 (222)
T PF03006_consen 5 NETVNIWTHLLGAILFLALLIFLLSLASSPSFSPWDYIPFLIYLLSAILCFLCSTLYHLFSCHSEGKVYHIFLRLDYAGI 84 (222)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhHHHhhCCCcCCcHHHHHHHHhcchhhh
Confidence 38999999985554444443322222111111233456788999999999999999999332 23466799988
Q ss_pred HHHHHHHHHHHHHHHhc--cchhh---HHHHHHHHHHHHHhhhhhcc-CC-----ccchhhhhhHHHHHHHHHHHHcCCC
Q 022991 118 TIAFTSIIAIFIIERID--EHKGT---VSLIPLLLAGVVSILYWSFF-DD-----LRPYALVQFVPCIAIPLMAILLPPM 186 (289)
Q Consensus 118 ~iaf~~l~~~~~~erv~--~r~g~---~~l~~Ll~~g~~sv~yw~~~-~d-----lrpy~~vQ~~p~l~i~~~~~~~~~~ 186 (289)
.+.+++-....+--... ...+. .....+.+.|.......... .. ...|+..-..+.+.+.-......+.
T Consensus 85 ~l~i~gs~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~p~~~~~~~~~~~ 164 (222)
T PF03006_consen 85 FLLIAGSYTPFIYYGFYCHPWLGWFYLAFIWILALIGIVLSLFPCFSSPRFRWLRTIFFLLLGWSGIIPIFHRIFFLGGW 164 (222)
T ss_pred hHhHhhhhhhHHHhhccccchHHHHHHHHHHHHHHHhHHhhcchhhcCCccceeeehHhHHHHHHHHhhhHHHHHHhccc
Confidence 88776654433332221 11222 11122222233333222211 11 2223333322322222212222211
Q ss_pred --CchhHHHHHHHHHHHHHHHHHhcC------HHHHhhcccccccchHHHHHHhHHHHH
Q 022991 187 --YTHSTYWLWAAGFYLLAKVEEAMD------KPIYRWTHHIVSGHTLKHLCAAMVPVF 237 (289)
Q Consensus 187 --~~~~~~~~~a~~~yllAk~~e~~D------~~ic~~~~~llsGHsLwHLlaAl~~~~ 237 (289)
...-.....+..+|.+|-++-..+ .--||. +-+.|.+||++..++.++
T Consensus 165 ~~~~~~~~~~~~~~~y~~G~~fy~~~~PEr~~pg~fD~---~g~sHqi~Hi~v~~~~~~ 220 (222)
T PF03006_consen 165 GSPDPLWLLILGGVLYLLGAVFYATRIPERWFPGKFDI---WGHSHQIWHIFVVLAALC 220 (222)
T ss_pred cchHHHHHHHHHHHHHHHhHHHhhhccccccCCCCcCC---CCccHHHHHHHHHHHHHH
Confidence 111566778889999999998888 223343 357899999999988753
No 4
>PF13965 SID-1_RNA_chan: dsRNA-gated channel SID-1
Probab=97.91 E-value=0.0013 Score=67.77 Aligned_cols=111 Identities=20% Similarity=0.253 Sum_probs=83.3
Q ss_pred CCCCcccccccccccccCCchhhHhhhhHHHHHHHHHHHHHHHhcccccccc--chhhh---HHHHHHHHHHHHHHhhhh
Q 022991 26 IPQSEEYHDFADQRKFFGIPNTLNVVSNFPFLVIGIVGLVLCFHGNYFNLRL--QGELW---GWACFFIGVAAVGVGSSY 100 (289)
Q Consensus 26 ipq~~~yh~fAD~R~~~gIpn~~NvlSNlpFl~~gl~Gl~~~~~~~~~~~~~--~~~~~---~~~lff~Gl~lvG~GSay 100 (289)
=.||.=||+|.=.|.+++..-|=|++||+.+++.|+.=+....||+.+.... -+.+. .+...-.++++-|+-|+.
T Consensus 253 gn~D~CyyNf~Cs~p~~~~~~FN~v~Sn~gy~~lG~lfliiv~~r~~~~~~~~~~gi~~~~~~~~~~g~~li~egi~sa~ 332 (570)
T PF13965_consen 253 GNQDMCYYNFLCSHPLGGFSAFNNVFSNIGYVLLGLLFLIIVFRRKIFHRQPTSYGIPQHYGLFYAMGLALIMEGILSAC 332 (570)
T ss_pred CCCceeeeehhhhcccccccchhhhHhhHHHHHHHHHHHHHHHHhhhhccccccCCCCccchhHHHHHHHHHHHHHHHHH
Confidence 5788899999999999999999999999999999987665544433221111 12222 344555677789999999
Q ss_pred hcCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhccc
Q 022991 101 YHLEPNDARLVWDRLPMTIAFTSIIAIFIIERIDEH 136 (289)
Q Consensus 101 yHl~p~~~~llwDrLPM~iaf~~l~~~~~~erv~~r 136 (289)
||.=|++...--|.-=|=+.....+--+...|-+..
T Consensus 333 yh~CPn~~~fqfdt~fmyvi~~L~~lkiyq~RH~di 368 (570)
T PF13965_consen 333 YHICPNRSNFQFDTSFMYVIAGLCMLKIYQKRHPDI 368 (570)
T ss_pred hhcCcCchhhHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 999999999999998887766655555566666654
No 5
>PF04080 Per1: Per1-like ; InterPro: IPR007217 A member of this family has been implemented in protein processing in the endoplasmic reticulum [].
Probab=97.73 E-value=0.0028 Score=59.73 Aligned_cols=209 Identities=14% Similarity=0.060 Sum_probs=118.8
Q ss_pred cCCCCCCcccccccccccccCCchhhHhhhhHHHHHHHHHHHHHHHhccccccccchhhhHHHHHHHHHHHHHHhhhhhc
Q 022991 23 TPAIPQSEEYHDFADQRKFFGIPNTLNVVSNFPFLVIGIVGLVLCFHGNYFNLRLQGELWGWACFFIGVAAVGVGSSYYH 102 (289)
Q Consensus 23 ~p~ipq~~~yh~fAD~R~~~gIpn~~NvlSNlpFl~~gl~Gl~~~~~~~~~~~~~~~~~~~~~lff~Gl~lvG~GSayyH 102 (289)
.+|+| +||-==-=+.++||-|..-|+-.+.=+++-..|+...++.- +.+.+ ....|..+...-+..=+=|+.||
T Consensus 34 g~~i~---QfhGKWPF~Rv~GiQEp~Sv~FSllNl~~h~~~~~~~~~~~--~~~~p-~~~~~~~~~~v~~naW~wStvFH 107 (267)
T PF04080_consen 34 GEPIV---QFHGKWPFKRVLGIQEPASVLFSLLNLLAHYRGLRKFRRQV--PRNSP-MYPYYIIYAIVSMNAWIWSTVFH 107 (267)
T ss_pred CCCcc---cccccccchhhhcCchHHHHHHHHHhHHHHHHHHHHHHHhc--cCCCC-CcCeeehHHHHHHHHHHHHHHHH
Confidence 44555 35541122456999999999988888888888886655532 11111 11124444444444557899999
Q ss_pred CCCCCchhhhhhhhHHHHHHHHHHHHHHHHhcc--chhhHHHHHHHHHHHHH--hhhhhc-cC----CccchhhhhhHHH
Q 022991 103 LEPNDARLVWDRLPMTIAFTSIIAIFIIERIDE--HKGTVSLIPLLLAGVVS--ILYWSF-FD----DLRPYALVQFVPC 173 (289)
Q Consensus 103 l~p~~~~llwDrLPM~iaf~~l~~~~~~erv~~--r~g~~~l~~Ll~~g~~s--v~yw~~-~~----dlrpy~~vQ~~p~ 173 (289)
+.=...|--+|=-.=....+.-++..+.+..+. +.....++...++++.+ +.|-.. .- |++..+.+-.+-.
T Consensus 108 ~RD~~~TE~lDYf~A~a~vl~~l~~~~~R~f~l~~~~~~~~~~~~~~~~~~~~Hv~yL~~~~fdY~YNM~~nv~~G~~~~ 187 (267)
T PF04080_consen 108 TRDTPLTEKLDYFSAGATVLFGLYAAIVRIFRLYRRRRLRRIFTALCIAFYIAHVSYLSFVRFDYGYNMKANVAVGLLQN 187 (267)
T ss_pred HhcccHhhHhHHhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHccccccccHhHHHHHHHHHHHHH
Confidence 999999999998776655555555555555544 33333344444333322 555522 11 3333333222222
Q ss_pred HHHHHHHHHcCCCCchh-------HHHH--HHHHHHHHHHHHHhcCHHHHhhcccccccchHHHHHHhHHHHHHHH
Q 022991 174 IAIPLMAILLPPMYTHS-------TYWL--WAAGFYLLAKVEEAMDKPIYRWTHHIVSGHTLKHLCAAMVPVFLTL 240 (289)
Q Consensus 174 l~i~~~~~~~~~~~~~~-------~~~~--~a~~~yllAk~~e~~D~~ic~~~~~llsGHsLwHLlaAl~~~~l~~ 240 (289)
+.-...+....+++.+. .... .....-.+|..+|..|-+=.- .++-.|++||+.|.--+++...
T Consensus 188 ~lw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~~~lam~LEl~DFpP~~---~~lDAHALWHl~Tip~~~~wy~ 260 (267)
T PF04080_consen 188 ILWLLWSFRNYRRYPSVKKSYSKRWKLWPILFVVLTILAMSLELFDFPPIF---WLLDAHALWHLATIPPTYLWYD 260 (267)
T ss_pred HHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccCccc---ccchHHHHHHHHHhhHHHHHHH
Confidence 22222222222222221 2222 556778889999999985432 2588899999999987765443
No 6
>PRK15087 hemolysin; Provisional
Probab=97.51 E-value=0.012 Score=53.71 Aligned_cols=184 Identities=20% Similarity=0.166 Sum_probs=99.2
Q ss_pred CchhhHhhhhHHHHHHHHHHHHHHHhccccccccchhhhHHHHHHHHHHHHHHhhhhhcCCCCC----chhhhhhhhHHH
Q 022991 44 IPNTLNVVSNFPFLVIGIVGLVLCFHGNYFNLRLQGELWGWACFFIGVAAVGVGSSYYHLEPND----ARLVWDRLPMTI 119 (289)
Q Consensus 44 Ipn~~NvlSNlpFl~~gl~Gl~~~~~~~~~~~~~~~~~~~~~lff~Gl~lvG~GSayyHl~p~~----~~llwDrLPM~i 119 (289)
-.|..|..|++.=.+.++.|+.....+.....+...+.....++..++.+-=.-|+.||+.++. .-.-+|...|-+
T Consensus 14 ~eE~~N~~tH~ig~~~a~~~~~~l~~~~~~~~~~~~~~~~~~vy~~s~~~l~~~StlYH~~~~~~~~~~~~rlDh~~I~l 93 (219)
T PRK15087 14 AEEIANSISHGIGLVFGIVGLVLLLVQAVDANADATAITSYSLYGGSMILLFLASTLYHAIPHQRAKRWLKKFDHCAIYL 93 (219)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHccHHHHHH
Confidence 3699999999854445666664433221011111223345677888888888889999999843 234578888888
Q ss_pred HHHHHHHHHHHHHhccchhhHHHHH---HHHHHHHHhhhhhccCCccchhhhhhHHH-----HHHHHHHHHcCCCCchhH
Q 022991 120 AFTSIIAIFIIERIDEHKGTVSLIP---LLLAGVVSILYWSFFDDLRPYALVQFVPC-----IAIPLMAILLPPMYTHST 191 (289)
Q Consensus 120 af~~l~~~~~~erv~~r~g~~~l~~---Ll~~g~~sv~yw~~~~dlrpy~~vQ~~p~-----l~i~~~~~~~~~~~~~~~ 191 (289)
.+++-..-..--......+...+.. +.++|...-..+ .+.-|..=..-|+.+ +.++-+....+ ...-.
T Consensus 94 lIaGsytP~~~~~~~~~~~~~l~~~iW~~a~~Gi~~~~~~--~~~~r~l~~~~Yl~mGw~~v~~~~~l~~~~~--~~~l~ 169 (219)
T PRK15087 94 LIAGTYTPFLLVGLDSPLARGLMIVIWSLALLGILFKLAF--AHRFKVLSLVTYLAMGWLSLIVIYQLAIKLA--IGGVT 169 (219)
T ss_pred HHHHhhHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHHHHHHHHHHHhCC--HHHHH
Confidence 7776554333322222333322222 223344333222 232232222223322 22222211121 12234
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHhhcccccccchHHHHHHhHHHHHHH
Q 022991 192 YWLWAAGFYLLAKVEEAMDKPIYRWTHHIVSGHTLKHLCAAMVPVFLT 239 (289)
Q Consensus 192 ~~~~a~~~yllAk~~e~~D~~ic~~~~~llsGHsLwHLlaAl~~~~l~ 239 (289)
.+..+..+|.+|-.+=..|+. + +-|.+||++.-++..+=.
T Consensus 170 ~l~~GG~~Y~~G~~fY~~~~~-----p---~~H~IwH~fVl~ga~~H~ 209 (219)
T PRK15087 170 LLAVGGVVYSLGVIFYVCKRI-----P---YNHAIWHGFVLGGSVCHF 209 (219)
T ss_pred HHHHHhHHHHhhHHHHccCCC-----C---CchhHHHHHHHHHHHHHH
Confidence 555677789999888776621 2 259999999988775433
No 7
>TIGR01065 hlyIII channel protein, hemolysin III family. This family includes proteins from pathogenic and non-pathogenic bacteria, Homo sapiens and Drosophila. In Bacillus cereus, a pathogen, it has been show to function as a channel-forming cytolysin. The human protein is expressed preferentially in mature macrophages, consistent with a role cytolytic role.
Probab=97.46 E-value=0.0095 Score=53.46 Aligned_cols=182 Identities=16% Similarity=0.162 Sum_probs=99.0
Q ss_pred hhhHhhhhHHHHHHHHHHHHHHHhccccccccchhhhHHHHHHHHHHHHHHhhhhhcCCCCCc-----hhhhhhhhHHHH
Q 022991 46 NTLNVVSNFPFLVIGIVGLVLCFHGNYFNLRLQGELWGWACFFIGVAAVGVGSSYYHLEPNDA-----RLVWDRLPMTIA 120 (289)
Q Consensus 46 n~~NvlSNlpFl~~gl~Gl~~~~~~~~~~~~~~~~~~~~~lff~Gl~lvG~GSayyHl~p~~~-----~llwDrLPM~ia 120 (289)
|..|+.|.+.=.+.++.|...+..... ...+..+...+.++.++...-=..|+.||+.+.++ .+-+|...|.+.
T Consensus 2 e~~N~~tH~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~vy~~~~~~~~~~St~yH~~~~s~~~~~~~~rlD~~gI~~l 80 (204)
T TIGR01065 2 EIANAITHGIGAVLSIIALALLVIYSW-DHGGAVAVLGFSIYGISLILLFLVSTLYHSIPKGSKAKNWLRKIDHSMIYVL 80 (204)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcCchhHHHHHHHccHHHHHHH
Confidence 788999998444444444432222110 11123355678889999988889999999999532 344688888888
Q ss_pred HHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhhhhc-cCCccchhhhhhH-----HHHHHHHHHHHcCCCCchhHHHH
Q 022991 121 FTSIIAIFIIERIDEHKGTVSLIPLLLAGVVSILYWSF-FDDLRPYALVQFV-----PCIAIPLMAILLPPMYTHSTYWL 194 (289)
Q Consensus 121 f~~l~~~~~~erv~~r~g~~~l~~Ll~~g~~sv~yw~~-~~dlrpy~~vQ~~-----p~l~i~~~~~~~~~~~~~~~~~~ 194 (289)
+++-..-..--......+...+...-..+...+..-.. .+.-|+.=..-|+ +++.+|-+....+ ...-..+.
T Consensus 81 IaGsytP~~~~~~~~~~~~~~~~~iw~la~~gi~~~~~~~~~~r~~r~~~y~~~G~~~v~~~~~~~~~~~--~~~~~~l~ 158 (204)
T TIGR01065 81 IAGTYTPFLLLALPGPLGWTVLWIIWGLAIGGIIYKLFFHKRPRWLSLFLYLIMGWLVVLVIKPLYHNLP--GAGFSLLA 158 (204)
T ss_pred HHHhhHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHccCCCchhHHHHHHHHHHHHHHHHHHHHHhCC--HHHHHHHH
Confidence 77765544443333334433222221222222222222 1222322222222 3233332211111 11234555
Q ss_pred HHHHHHHHHHHHHhcCHHHHhhccccccc-chHHHHHHhHHHHH
Q 022991 195 WAAGFYLLAKVEEAMDKPIYRWTHHIVSG-HTLKHLCAAMVPVF 237 (289)
Q Consensus 195 ~a~~~yllAk~~e~~D~~ic~~~~~llsG-HsLwHLlaAl~~~~ 237 (289)
.+..+|.+|-.+=..|.+-- . . |.+||++.-++..+
T Consensus 159 ~gg~~Y~~G~~fY~~~~p~~-~------~~H~iwH~fV~~g~~~ 195 (204)
T TIGR01065 159 AGGLLYTVGAIFYALKWPIP-F------TYHAIWHLFVLGASAC 195 (204)
T ss_pred HHhHHHHcchHheeecCCCC-C------CcChHHHHHHHHHHHH
Confidence 67788999999877774321 1 2 99999998887744
No 8
>KOG2970 consensus Predicted membrane protein [Function unknown]
Probab=96.81 E-value=0.077 Score=50.84 Aligned_cols=203 Identities=19% Similarity=0.277 Sum_probs=106.7
Q ss_pred CCCCCCcccc-cccccccccCCchhhHhhhhHHHHHHHHHHHHHHHhccccccccchhh-hHHHHHHHHHHHHHHhhhhh
Q 022991 24 PAIPQSEEYH-DFADQRKFFGIPNTLNVVSNFPFLVIGIVGLVLCFHGNYFNLRLQGEL-WGWACFFIGVAAVGVGSSYY 101 (289)
Q Consensus 24 p~ipq~~~yh-~fAD~R~~~gIpn~~NvlSNlpFl~~gl~Gl~~~~~~~~~~~~~~~~~-~~~~lff~Gl~lvG~GSayy 101 (289)
.|||| || ---=+|- +||-|+.-|+=.+.=++.=.-|++.-++.. +.+.+... ..|-+...--+..=+-|+.|
T Consensus 85 ~pi~q---fhGKWpFlrv-lGiQEp~SviFS~lNl~~h~~g~~~~r~~~--~~~~~~r~~~l~~I~a~i~mnawiwSsvF 158 (319)
T KOG2970|consen 85 GPIPQ---FHGKWPFLRV-LGIQEPFSVIFSFLNLITHYKGLVKFRRPK--KPNRPTRYERLWLIYAYIGMNAWIWSSVF 158 (319)
T ss_pred Ccccc---ccCCcchhhh-hhccchHHHHHHHHHHHHHHHHHhheeccc--CCCCcchhccchhhHHHHHHHHHHHHHhh
Confidence 45655 66 2223444 999999988766555555556665433322 22222221 12333333345556889999
Q ss_pred cCCCCCchhhhhhhhHH--HHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHH--hhhhhcc-----CCccchhhhhhHH
Q 022991 102 HLEPNDARLVWDRLPMT--IAFTSIIAIFIIERIDEHKGTVSLIPLLLAGVVS--ILYWSFF-----DDLRPYALVQFVP 172 (289)
Q Consensus 102 Hl~p~~~~llwDrLPM~--iaf~~l~~~~~~erv~~r~g~~~l~~Ll~~g~~s--v~yw~~~-----~dlrpy~~vQ~~p 172 (289)
|..=.+-|--.|=-.=. +-|..++.++..-.+-.-++.+-.+...++.+.+ +.|-... =|++-.+.+-.+-
T Consensus 159 H~rD~~lTEklDYf~A~~~vlf~ly~a~ir~~~i~~~~~~~~~ita~fla~ya~Hi~yls~~~fdYgyNm~~~v~~g~iq 238 (319)
T KOG2970|consen 159 HIRDVPLTEKLDYFSAYLTVLFGLYVALIRMLSIQSLPALRGMITAIFLAFYANHILYLSFYNFDYGYNMIVCVAIGVIQ 238 (319)
T ss_pred hhcCCchHhhhhHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHhheecccccceeeehhhHHHH
Confidence 99988888888864432 2333333333333333332333444444443333 5555221 1344433332221
Q ss_pred HHHHHHHHHHcCCCCch-h-HHHHHHHHHHHHHHHHHhcCHHHHhhcccccccchHHHHHHhHHHH
Q 022991 173 CIAIPLMAILLPPMYTH-S-TYWLWAAGFYLLAKVEEAMDKPIYRWTHHIVSGHTLKHLCAAMVPV 236 (289)
Q Consensus 173 ~l~i~~~~~~~~~~~~~-~-~~~~~a~~~yllAk~~e~~D~~ic~~~~~llsGHsLwHLlaAl~~~ 236 (289)
.++-.... +..+++.. . .....-+.++.+|..+|..|-+=+++. +--|++||+.+---++
T Consensus 239 ~vlw~~~~-~~~~~~~s~~~i~~~~i~~~~~LA~sLEi~DFpPy~~~---iDAHALWHlaTIplt~ 300 (319)
T KOG2970|consen 239 LVLWLVWS-FKKRNLPSFWRIWPILIVIFFFLAMSLEIFDFPPYAWL---IDAHALWHLATIPLTI 300 (319)
T ss_pred HHHHHHHH-HHhhcCcchhhhhHHHHHHHHHHHHHHHhhcCCchhhh---cchHHHHHhhcCccHH
Confidence 11111111 11222222 2 223344566799999999999877654 7789999999875543
No 9
>COG1272 Predicted membrane protein, hemolysin III homolog [General function prediction only]
Probab=96.18 E-value=0.24 Score=45.77 Aligned_cols=189 Identities=15% Similarity=0.156 Sum_probs=105.2
Q ss_pred chhhHhhhhHHHHHHHHHHHHHHHhccccccccchhhhHHHHHHHHHHHHHHhhhhhcCCCCC-----chhhhhhhhHHH
Q 022991 45 PNTLNVVSNFPFLVIGIVGLVLCFHGNYFNLRLQGELWGWACFFIGVAAVGVGSSYYHLEPND-----ARLVWDRLPMTI 119 (289)
Q Consensus 45 pn~~NvlSNlpFl~~gl~Gl~~~~~~~~~~~~~~~~~~~~~lff~Gl~lvG~GSayyHl~p~~-----~~llwDrLPM~i 119 (289)
.|..|.+|.+.=.++++.++....-.... ..+........++-.++..--.-|..||..|.. .-+-.|...+.+
T Consensus 20 ~e~~n~~tHlvGail~i~~l~~l~~~a~~-~~~~~~~~~~~iy~~sl~~l~~~St~YH~~~~~~~~k~~~rk~DH~~I~v 98 (226)
T COG1272 20 EEIANAITHLIGAILAIVGLVLLLVYALI-TGSALAVIVFSIYGLSLFLLFLVSTLYHSIPNGQKAKAILRKFDHSGIYV 98 (226)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCChhHhhhhhHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHccHHHHHH
Confidence 57889999986666666666433221101 112233456788888999999999999999963 456678888887
Q ss_pred HHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhhh-hccCCccchhhhhhHHH--HHHHHHHHHcC-CCCchhHHHHH
Q 022991 120 AFTSIIAIFIIERIDEHKGTVSLIPLLLAGVVSILYW-SFFDDLRPYALVQFVPC--IAIPLMAILLP-PMYTHSTYWLW 195 (289)
Q Consensus 120 af~~l~~~~~~erv~~r~g~~~l~~Ll~~g~~sv~yw-~~~~dlrpy~~vQ~~p~--l~i~~~~~~~~-~~~~~~~~~~~ 195 (289)
.+++-.--+.---.....+...+...-..++..+.+- ...+.-|++-..-|+.+ +.++.+--... -....-..+.+
T Consensus 99 LIAgSyTP~~l~~l~~~~~~~~~~iiW~lal~Gi~~kl~~~~~~r~ls~~~yl~mGw~~v~~~~~l~~~l~~~~~~~l~~ 178 (226)
T COG1272 99 LIAGSYTPFLLVGLYGPLGWILLGLIWGLALAGILFKLFFKKRFRKLSLVLYLAMGWLGLIVIKPLIAKLGLIGLVLLAL 178 (226)
T ss_pred HHHHhhHHHhHHHhccchHHHHHHHHHHHHHHHHhhhhhccCcCceeeehhhHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 7765433222222222233322222222233333222 22233444444444422 22222222211 11133466667
Q ss_pred HHHHHHHHHHHHhcCHHHHhhcccccccchHHHHHHhHHHHHHHH
Q 022991 196 AAGFYLLAKVEEAMDKPIYRWTHHIVSGHTLKHLCAAMVPVFLTL 240 (289)
Q Consensus 196 a~~~yllAk~~e~~D~~ic~~~~~llsGHsLwHLlaAl~~~~l~~ 240 (289)
+...|.+|-.+=..|. ..+-.-|.+||++.-.|..+=..
T Consensus 179 GGv~YsvG~ifY~~~~------~~~~~~H~iwH~fVv~ga~~Hf~ 217 (226)
T COG1272 179 GGVLYSVGAIFYVLRI------DRIPYSHAIWHLFVVGGAACHFI 217 (226)
T ss_pred HhHHheeeeEEEEEee------ccCCchHHHHHHHHHHHHHHHHH
Confidence 8888888877655554 23456799999999888755433
No 10
>PF12036 DUF3522: Protein of unknown function (DUF3522); InterPro: IPR021910 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 220 to 787 amino acids in length.
Probab=95.10 E-value=0.33 Score=43.31 Aligned_cols=63 Identities=25% Similarity=0.307 Sum_probs=36.3
Q ss_pred hHhhhhHHHHHHHHHHHHHHHhccccccccchhhhHHHHHHHHHHHHHHhhhhhcCCC-CC-----chhhhhhhhHHHHH
Q 022991 48 LNVVSNFPFLVIGIVGLVLCFHGNYFNLRLQGELWGWACFFIGVAAVGVGSSYYHLEP-ND-----ARLVWDRLPMTIAF 121 (289)
Q Consensus 48 ~NvlSNlpFl~~gl~Gl~~~~~~~~~~~~~~~~~~~~~lff~Gl~lvG~GSayyHl~p-~~-----~~llwDrLPM~iaf 121 (289)
.=++||++|+-.-.... +|+... |. ++ -..+++-|+.||+-= .+ --.=||||-=.-++
T Consensus 10 ~l~lSnl~~lP~i~~a~---rr~~~~------Ea------~v-~~~tm~~S~~YHacd~~~~~~~lc~~~~~~L~~~~~~ 73 (186)
T PF12036_consen 10 LLTLSNLAFLPTIYVAV---RRRYHF------EA------FV-YTFTMFFSTFYHACDSGPGEIFLCIMDWHRLQNIDFI 73 (186)
T ss_pred HHHHHHHHHHHHHHHHH---HHhhHH------HH------HH-HHHHHHHHHhcccccCCCCceEEeechHHHHHHHHHH
Confidence 45899999997764332 332211 21 12 235678899999984 22 23456777655444
Q ss_pred HHHHH
Q 022991 122 TSIIA 126 (289)
Q Consensus 122 ~~l~~ 126 (289)
.+.++
T Consensus 74 ~s~~~ 78 (186)
T PF12036_consen 74 GSFLS 78 (186)
T ss_pred HHHHH
Confidence 44443
No 11
>COG5237 PER1 Predicted membrane protein [Function unknown]
Probab=91.17 E-value=6.3 Score=37.44 Aligned_cols=198 Identities=21% Similarity=0.306 Sum_probs=100.1
Q ss_pred cccc-ccccccccCCchhhHhhhhHHHHHHHHHHHHHHHhccccccccchh--hhHHHHHHHHHHHHHHhhhhhcCCCCC
Q 022991 31 EYHD-FADQRKFFGIPNTLNVVSNFPFLVIGIVGLVLCFHGNYFNLRLQGE--LWGWACFFIGVAAVGVGSSYYHLEPND 107 (289)
Q Consensus 31 ~yh~-fAD~R~~~gIpn~~NvlSNlpFl~~gl~Gl~~~~~~~~~~~~~~~~--~~~~~lff~Gl~lvG~GSayyHl~p~~ 107 (289)
+||. .-=||- +|+.|+..++=.+-=++.--.|....+|+- .+....++ -..|. ++|+. .=+-|..||-.-+-
T Consensus 86 q~hGkW~F~rV-lG~qEfFS~~FS~~Nfi~hy~gfh~m~r~i-~~e~~~~R~~~l~wv--~igml-Awi~SsvFHird~~ 160 (319)
T COG5237 86 QRHGKWGFQRV-LGMQEFFSALFSFMNFITHYIGFHRMLRKI-LRETRLGRLYYLQWV--YIGML-AWISSSVFHIRDNT 160 (319)
T ss_pred hhcCccceeee-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccceEEeeHH--HHHHH-HHHHHhheeeeccc
Confidence 3554 333454 899999888766555555556665433321 00001111 11232 44443 34679999998777
Q ss_pred chhhhhhhh--HHHHHHHHHHHHHHHHhccch-hhHHHHHH--HHHHHHH--hhhh-----hccCCccc---hhhhhhHH
Q 022991 108 ARLVWDRLP--MTIAFTSIIAIFIIERIDEHK-GTVSLIPL--LLAGVVS--ILYW-----SFFDDLRP---YALVQFVP 172 (289)
Q Consensus 108 ~~llwDrLP--M~iaf~~l~~~~~~erv~~r~-g~~~l~~L--l~~g~~s--v~yw-----~~~~dlrp---y~~vQ~~p 172 (289)
-|-=.|--- .++-|..+...+..-++..-+ ++..-.|+ .++.+.+ +.+. -+.-|++. ..+.|.
T Consensus 161 iTeklDYF~AgltVLfGfy~~lvrm~~~~~~p~~K~~~~~~~aifia~fa~Hi~rls~i~fdY~YNm~~n~aigv~q~-- 238 (319)
T COG5237 161 ITEKLDYFLAGLTVLFGFYMALVRMILIVSPPIEKATRGPLQAIFIAFFAYHIHRLSNIEFDYVYNMISNCAIGVTQT-- 238 (319)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHhhcCchHHHHHhHHHHHHHHHHHHHHHHHhhccceeeehhhhcchHHHHHH--
Confidence 666666432 333333444444444444333 23333333 2222222 2222 11113332 222332
Q ss_pred HHHHHHHHHHcCCCCch--hHHHHHHHHHHHHHHHHHhcCHHHHhhcccccccchHHHHHHhHHHHHHH
Q 022991 173 CIAIPLMAILLPPMYTH--STYWLWAAGFYLLAKVEEAMDKPIYRWTHHIVSGHTLKHLCAAMVPVFLT 239 (289)
Q Consensus 173 ~l~i~~~~~~~~~~~~~--~~~~~~a~~~yllAk~~e~~D~~ic~~~~~llsGHsLwHLlaAl~~~~l~ 239 (289)
++.-...+.-.++-++ .|..+.-...+.+|-.+|..|-+=++++ +-.|++|||++-....++.
T Consensus 239 -iL~~~~s~~ny~~~g~~~kr~p~~~v~~~~lA~slElfDf~pya~l---IDaHAlWHL~t~~~t~~ly 303 (319)
T COG5237 239 -ILSHLVSFLNYRKLGHTFKRIPLFFVFFFFLAGSLELFDFPPYAYL---IDAHALWHLITCISTPFLY 303 (319)
T ss_pred -HHHHHHHHhhhHhhhhhhhhhhHHHHHHHHHhhhhhhhccCcHHHH---hhHHHHhHhhhccchHHHH
Confidence 1111222221111111 4545566677888999999999888754 7889999999988664443
No 12
>PF14325 DUF4383: Domain of unknown function (DUF4383)
Probab=90.06 E-value=3.7 Score=34.55 Aligned_cols=85 Identities=18% Similarity=0.352 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHHHHHHcCCCCC-CcccccccccccccCC-chhhHhhhhHHHHHHHHHHHHHHHhccccccccchh--h
Q 022991 6 VYAWGVALICFIVLMIVTPAIPQ-SEEYHDFADQRKFFGI-PNTLNVVSNFPFLVIGIVGLVLCFHGNYFNLRLQGE--L 81 (289)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~p~ipq-~~~yh~fAD~R~~~gI-pn~~NvlSNlpFl~~gl~Gl~~~~~~~~~~~~~~~~--~ 81 (289)
.++.|++++++-++ =+.|.+.+ .++.....+++.++|+ + .|.+-|+.-++.|+.|+...++.+ .++ .
T Consensus 5 al~~G~~fl~~Gil-GFiPg~t~~~~~~~~~~~~~~lfGlF~--vn~lhn~vHl~~Gv~gl~aa~~~~------~Ar~~~ 75 (125)
T PF14325_consen 5 ALVIGVVFLLLGIL-GFIPGFTTNYDEFAGHHSGGYLFGLFA--VNPLHNIVHLLFGVAGLAAARSPR------AARAFL 75 (125)
T ss_pred HHHHHHHHHHHHHH-hCcCCCCCcccccccCCCCCeEEEeee--ccHHHHHHHHHHHHHHHHHHhchH------HHHHHH
Confidence 34455655555443 34577665 3334455578889997 6 899999999999999986533311 122 2
Q ss_pred hHHHHHHHHHHHHHHhhh
Q 022991 82 WGWACFFIGVAAVGVGSS 99 (289)
Q Consensus 82 ~~~~lff~Gl~lvG~GSa 99 (289)
+...+.|.++...|+...
T Consensus 76 ~~~g~~y~~l~i~Gl~~~ 93 (125)
T PF14325_consen 76 RLFGVVYLALGIYGLFPG 93 (125)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 234455666555555433
No 13
>TIGR02459 CbtB cobalt transporter subunit CbtB (proposed). This model represents a family of proteins which have been proposed to act as cobalt transporters acting in concert with vitamin B12 biosynthesis systems. Evidence for this assignment includes 1) prediction of a single trans-membrane segment and a C-terminal histidine-rich motif likely to be a metal-binding site, 2) positional gene linkage with known B12 biosynthesis genes, 3) upstream proximity of B12 transcriptional regulatory sites, 4) the absence of other known cobalt import systems and 5) the obligate co-localization with a protein (CbtA) predicted to have five additional trans-membrane segments.
Probab=76.92 E-value=1.5 Score=32.70 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=20.2
Q ss_pred cCCCCCCccccccc-ccccccCCch
Q 022991 23 TPAIPQSEEYHDFA-DQRKFFGIPN 46 (289)
Q Consensus 23 ~p~ipq~~~yh~fA-D~R~~~gIpn 46 (289)
.--..|...-|+++ |.|-.+|.|+
T Consensus 35 ~vG~~q~~~vHe~~HD~RH~~gFPC 59 (60)
T TIGR02459 35 FVGFSHIDAVHNAAHDTRHSAAFPC 59 (60)
T ss_pred HHhhccHHHHHHHHHHHHHhcCCCC
Confidence 34478888889999 9999999985
No 14
>KOG4243 consensus Macrophage maturation-associated protein [Defense mechanisms]
Probab=73.26 E-value=0.77 Score=42.95 Aligned_cols=174 Identities=16% Similarity=0.129 Sum_probs=86.9
Q ss_pred CchhhHhhhhHHHHHHHHHHHHHHHhccccccccchhhhHHHHHHHHHHHHHHhhhhhcCCCCCch------------hh
Q 022991 44 IPNTLNVVSNFPFLVIGIVGLVLCFHGNYFNLRLQGELWGWACFFIGVAAVGVGSSYYHLEPNDAR------------LV 111 (289)
Q Consensus 44 Ipn~~NvlSNlpFl~~gl~Gl~~~~~~~~~~~~~~~~~~~~~lff~Gl~lvG~GSayyHl~p~~~~------------ll 111 (289)
+.+..|+.|...-++-++.|...+.+.. ++..+-....+.-.|+.+.-.-|-.||.----.+ -+
T Consensus 84 ~EhvAN~~tHai~I~PaIl~~~~l~~~s----~~d~q~i~awIYG~~lc~LFt~STvfH~~~~~~~hqn~~r~l~~~lH~ 159 (298)
T KOG4243|consen 84 YEHVANCYTHAIWIVPAILGSALLHRLS----DDDWQKITAWIYGMGLCALFTVSTVFHIVSWKKSHQNKLRTLEHCLHM 159 (298)
T ss_pred HHHHHhhHhhHhhhhHHHHHHHHHHHhh----hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999988888888876654422 1111111112233455555567888886432222 25
Q ss_pred hhhhhHHHHHHHHHH--HHHHHHhccchh---hHHHHHHHHHHHHHhhhhhccCCccchhhhh---hHHHHHHHHHHHHc
Q 022991 112 WDRLPMTIAFTSIIA--IFIIERIDEHKG---TVSLIPLLLAGVVSILYWSFFDDLRPYALVQ---FVPCIAIPLMAILL 183 (289)
Q Consensus 112 wDrLPM~iaf~~l~~--~~~~erv~~r~g---~~~l~~Ll~~g~~sv~yw~~~~dlrpy~~vQ---~~p~l~i~~~~~~~ 183 (289)
-||.-|=+++++.-. +.++| .|. ++ ++....+ +...++|-...-+ -|=.++ |+.+-.-|.+....
T Consensus 160 cDRa~IY~FIAaSY~PWLtLr~-~g~-~~~~m~W~IWlm---A~~Gi~Yq~~fHE--rYK~lEt~~Ylvmg~gPalvv~s 232 (298)
T KOG4243|consen 160 CDRAVIYFFIAASYAPWLTLRE-LGP-LASHMRWFIWLM---AAGGIIYQFLFHE--RYKVLETFFYLVMGFGPALVVTS 232 (298)
T ss_pred hhhhHhhhhhhhcccccccHHh-hCc-HHHHHHHHHHHH---HhcchhhhhhHHH--HHHHHHHHHHHHHhcCceEEEEE
Confidence 688655444443322 22221 111 11 1111111 2222333321110 133333 11111112222222
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHhcCHHHHhhcccccccchHHHHHHhHHH
Q 022991 184 PPMYTHSTYWLWAAGFYLLAKVEEAMDKPIYRWTHHIVSGHTLKHLCAAMVP 235 (289)
Q Consensus 184 ~~~~~~~~~~~~a~~~yllAk~~e~~D~~ic~~~~~llsGHsLwHLlaAl~~ 235 (289)
-+..+.-..+..|.++|.+|.++=-.|..| -=-|+.|||+-+++.
T Consensus 233 m~~~~Gl~~l~~GG~~Y~lGvvFFK~DG~i-------pfAHAIWHLFV~l~A 277 (298)
T KOG4243|consen 233 MNNTDGLQELATGGLFYCLGVVFFKSDGII-------PFAHAIWHLFVALAA 277 (298)
T ss_pred eCCchhHHHHHhCCEEEEEEEEEEecCCce-------ehHHHHHHHHHHHHc
Confidence 233222344556788999998887777655 335999999998876
No 15
>PF15100 TMEM187: TMEM187 protein family
Probab=66.41 E-value=1.2e+02 Score=28.56 Aligned_cols=204 Identities=15% Similarity=0.121 Sum_probs=97.7
Q ss_pred cCCCCCCcccccccccccccCCchh----hHhhhhHHHHHHHHHHHHHHHhccccccccchhhhHHH-HHHHHHH-HHHH
Q 022991 23 TPAIPQSEEYHDFADQRKFFGIPNT----LNVVSNFPFLVIGIVGLVLCFHGNYFNLRLQGELWGWA-CFFIGVA-AVGV 96 (289)
Q Consensus 23 ~p~ipq~~~yh~fAD~R~~~gIpn~----~NvlSNlpFl~~gl~Gl~~~~~~~~~~~~~~~~~~~~~-lff~Gl~-lvG~ 96 (289)
..++--+-.|-+||..-. -++|.+ .|++-|+.+++.|++=+ ++... ....+++ -+|. =-|++++ .-|.
T Consensus 21 Fd~v~v~~GyehYaE~p~-~~LP~~LaMPfNslvNv~Y~llG~yWL---~~~~~-~~~~~~~-a~Y~k~vfa~mAl~Ygp 94 (242)
T PF15100_consen 21 FDGVFVEVGYEHYAEAPV-ASLPAFLAMPFNSLVNVAYVLLGWYWL---RRAGK-APGTPAR-ARYLKDVFAWMALHYGP 94 (242)
T ss_pred ccchhhhcchhhhccCcc-ccchHHhhccHHHHHHHHHHHHHHHHH---hhccC-CCCCchH-HHHHHHHHHHHHHHHhH
Confidence 444444556666664332 334444 79999999999995432 33221 1111112 1332 1233333 3344
Q ss_pred hhhhhcCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhhhhccCCccchhhhhhH-HH-H
Q 022991 97 GSSYYHLEPNDARLVWDRLPMTIAFTSIIAIFIIERIDEHKGTVSLIPLLLAGVVSILYWSFFDDLRPYALVQFV-PC-I 174 (289)
Q Consensus 97 GSayyHl~p~~~~llwDrLPM~iaf~~l~~~~~~erv~~r~g~~~l~~Ll~~g~~sv~yw~~~~dlrpy~~vQ~~-p~-l 174 (289)
--+..=.|-+...-+.|+--..-.|+=.. ..++++...+.......+....++| |-..--+ .-.+++. .+ +
T Consensus 95 VQwlri~Tq~r~~AvLDQW~tLPifAW~v--~Wc~~l~~GW~p~~~l~ie~~Sl~S--Y~laLlH---p~GFEvaLG~hI 167 (242)
T PF15100_consen 95 VQWLRIATQTRRAAVLDQWFTLPIFAWVV--AWCLYLDRGWKPWRFLAIECLSLLS--YGLALLH---PRGFEVALGIHI 167 (242)
T ss_pred HHHHHHHHhhccHHHHHHHHhhHHHHHHH--HHHHHHHcCccHHHHHHHHHHHHHH--HHHHHhC---cccHHHHHHHHH
Confidence 45555567777777777644333333222 2344444444444455555555555 2211000 0112222 11 2
Q ss_pred HHHHHHHH-cCCCCc--h-hHHHHHHHHHHHHHHHHHhcCHHHHhhc-ccccccchHHHHHHhHHHHHHH
Q 022991 175 AIPLMAIL-LPPMYT--H-STYWLWAAGFYLLAKVEEAMDKPIYRWT-HHIVSGHTLKHLCAAMVPVFLT 239 (289)
Q Consensus 175 ~i~~~~~~-~~~~~~--~-~~~~~~a~~~yllAk~~e~~D~~ic~~~-~~llsGHsLwHLlaAl~~~~l~ 239 (289)
+..++..+ .-.+|. + .+++..|...-+.=.++...|+++=++- =+-++||+|--++-.+-..+..
T Consensus 168 ~~av~~a~~~~~r~g~~~s~~yl~La~lSclgFvvLkl~D~~La~~~lFq~lTGhFWSKvcdvlqfH~af 237 (242)
T PF15100_consen 168 LAAVGQALRTQFRYGDASSLTYLVLAVLSCLGFVVLKLLDHELARWRLFQRLTGHFWSKVCDVLQFHFAF 237 (242)
T ss_pred HHHHHHHHHHHhhhCCcccHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHhcccHHHHHHHHHHHHHHH
Confidence 22222222 222222 3 3666665543332233445687775542 1238999999999887654433
No 16
>PF09489 CbtB: Probable cobalt transporter subunit (CbtB); InterPro: IPR012667 This entry represents a family of proteins which have been proposed to act as cobalt transporters acting in concert with vitamin B12 biosynthesis systems []. Evidence for this assignment includes 1) prediction of a single transmembrane segment and a C-terminal histidine-rich motif likely to be a metal-binding site, 2) positional gene linkage with known B12 biosynthesis genes, 3) upstream proximity of B12 transcriptional regulatory sites, 4) the absence of other known cobalt import systems and 5) the obligate co-localization with a protein (CbtA) predicted to have five additional transmembrane segments.
Probab=64.18 E-value=4 Score=29.76 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=20.9
Q ss_pred HHcCCCCCCccccccc-ccccccCCch
Q 022991 21 IVTPAIPQSEEYHDFA-DQRKFFGIPN 46 (289)
Q Consensus 21 ~~~p~ipq~~~yh~fA-D~R~~~gIpn 46 (289)
+++--..|.+.-|+.+ |.|-..|+|.
T Consensus 27 ~~~~gf~~~~~~HdaaHD~RH~~gfPC 53 (54)
T PF09489_consen 27 LYFVGFSQAPAVHDAAHDTRHAAGFPC 53 (54)
T ss_pred HHHHHhcchHHHHHHhhhhHHhcCCCC
Confidence 3344477888899999 9999999985
No 17
>PF04973 NMN_transporter: Nicotinamide mononucleotide transporter; InterPro: IPR006419 The PnuC protein of Escherichia coli is membrane protein responsible for nicotinamide mononucleotide transport, subject to regulation by interaction with the NadR (also called NadI) protein (see IPR006417 from INTERPRO). The extreme N- and C-terminal regions are poorly conserved. ; GO: 0006810 transport, 0016020 membrane
Probab=64.09 E-value=71 Score=27.81 Aligned_cols=86 Identities=8% Similarity=0.017 Sum_probs=49.1
Q ss_pred CCchhhHhhhhHHHHHHHHHHHHHHHhccccccccc--hh-hhHH-HHHHHHHHHHHHhhhhhcCCCCCchhhhhhhhHH
Q 022991 43 GIPNTLNVVSNFPFLVIGIVGLVLCFHGNYFNLRLQ--GE-LWGW-ACFFIGVAAVGVGSSYYHLEPNDARLVWDRLPMT 118 (289)
Q Consensus 43 gIpn~~NvlSNlpFl~~gl~Gl~~~~~~~~~~~~~~--~~-~~~~-~lff~Gl~lvG~GSayyHl~p~~~~llwDrLPM~ 118 (289)
...+..|++.|+.|++..++|.+.+.|++..+...+ .. ...+ ......+...++-....+..-+.+.-.+|-+..+
T Consensus 42 ~~~ly~~~~lq~~~~~~~i~G~~~W~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Da~~~~ 121 (181)
T PF04973_consen 42 QAGLYGDMLLQLFYFIMSIYGWYQWKKGRDENDEVKVRRLSKKQWILLLIGILIGTAIFGFILKFLTDSPFPWLDALTTV 121 (181)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhhccCcccceeeCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 345678899999999999999987764321111111 11 1112 2222222233333333443336777899999887
Q ss_pred HHHHHHHHHH
Q 022991 119 IAFTSIIAIF 128 (289)
Q Consensus 119 iaf~~l~~~~ 128 (289)
+.+.+.+...
T Consensus 122 ~siva~~l~~ 131 (181)
T PF04973_consen 122 LSIVAQWLMA 131 (181)
T ss_pred HHHHHHHHHH
Confidence 7776665543
No 18
>KOG0748 consensus Predicted membrane proteins, contain hemolysin III domain [General function prediction only; Signal transduction mechanisms]
Probab=55.48 E-value=80 Score=30.10 Aligned_cols=47 Identities=19% Similarity=0.212 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCH------HHHhhcccccccchHHHHHHhHHHHHHHH
Q 022991 191 TYWLWAAGFYLLAKVEEAMDK------PIYRWTHHIVSGHTLKHLCAAMVPVFLTL 240 (289)
Q Consensus 191 ~~~~~a~~~yllAk~~e~~D~------~ic~~~~~llsGHsLwHLlaAl~~~~l~~ 240 (289)
.+......+|++|-++=.... -.|+..| .+|-++|++.-++.+.-..
T Consensus 212 ~~~~~~~~~yi~ga~fY~~riPER~~PGkfD~~G---~SHQifHv~vv~~a~~~~~ 264 (286)
T KOG0748|consen 212 GYVILMAVLYLLGALFYATRIPERWFPGKFDIWG---HSHQIFHVLVVLAALFHLE 264 (286)
T ss_pred hHHHHHHHHHHHHHHHhhcCCCcccCCCccceeC---ChhHHHHHHHHHHHHHHHH
Confidence 455566677777766644443 2244444 5799999999998866443
No 19
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=48.22 E-value=2.4e+02 Score=26.60 Aligned_cols=49 Identities=14% Similarity=-0.006 Sum_probs=27.5
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhcCCCCCchhhhhhhhHHHHHHHHHHHH
Q 022991 79 GELWGWACFFIGVAAVGVGSSYYHLEPNDARLVWDRLPMTIAFTSIIAIF 128 (289)
Q Consensus 79 ~~~~~~~lff~Gl~lvG~GSayyHl~p~~~~llwDrLPM~iaf~~l~~~~ 128 (289)
+.......++.|...+ .|+.|=++..-++..++.-+|+.+....++..-
T Consensus 133 gLGE~~v~l~~G~l~v-~g~~yvqt~~~~~~~~l~sl~~gl~~~~iL~~N 181 (285)
T TIGR02235 133 GLGEPICWLCFGPLAI-AAALYAQSQSFSLIPWKASILVGLATTLILFCS 181 (285)
T ss_pred CccHHHHHHHHHHHHH-HHHHHHhCCcCcHHHHHHHHHHHHHHHHHHHhc
Confidence 3333344555555554 555555665556666666777766555555543
No 20
>PLN02922 prenyltransferase
Probab=45.99 E-value=2.8e+02 Score=26.65 Aligned_cols=51 Identities=12% Similarity=-0.052 Sum_probs=26.9
Q ss_pred chhhhHHHHHHHHHHHHHHhhhhhcCC----------CCCchhhhhhhhHHHHHHHHHHHHH
Q 022991 78 QGELWGWACFFIGVAAVGVGSSYYHLE----------PNDARLVWDRLPMTIAFTSIIAIFI 129 (289)
Q Consensus 78 ~~~~~~~~lff~Gl~lvG~GSayyHl~----------p~~~~llwDrLPM~iaf~~l~~~~~ 129 (289)
.+...-...++.|...+ .|+.|=+.. +-+...+.--+|+....+.++.+--
T Consensus 149 ~gLGE~~v~i~fG~l~v-~g~y~~~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn 209 (315)
T PLN02922 149 KGLGEPLCFAAFGPLAT-TAFYLALASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSH 209 (315)
T ss_pred CcchHHHHHHHHHHHHH-HHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHcc
Confidence 33333344556666666 343322221 3455566677777776666666543
No 21
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=45.71 E-value=2.8e+02 Score=26.56 Aligned_cols=40 Identities=23% Similarity=0.225 Sum_probs=18.4
Q ss_pred CCCccccccc---ccccccCCch------hhHhhhhHHHHHHHHHHHHH
Q 022991 27 PQSEEYHDFA---DQRKFFGIPN------TLNVVSNFPFLVIGIVGLVL 66 (289)
Q Consensus 27 pq~~~yh~fA---D~R~~~gIpn------~~NvlSNlpFl~~gl~Gl~~ 66 (289)
-.-.+|.||. |..+..+.++ -+-.+....++++.+.|+++
T Consensus 65 N~~NDy~D~~~G~D~~~~~~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L 113 (304)
T PRK07419 65 NLSNDVFDADTGIDKNKFHSVVNLTGNKSLVFWLANLFLLLGLLGILAI 113 (304)
T ss_pred HHHHHHHHHhccCCcccccCcccccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677765 6543333333 22333334444444445443
No 22
>COG3714 Predicted membrane protein [Function unknown]
Probab=42.39 E-value=2.8e+02 Score=25.63 Aligned_cols=152 Identities=16% Similarity=0.121 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhhhhhcCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHH-hhhhhccCCccch
Q 022991 87 FFIGVAAVGVGSSYYHLEPNDARLVWDRLPMTIAFTSIIAIFIIERIDEHKGTVSLIPLLLAGVVS-ILYWSFFDDLRPY 165 (289)
Q Consensus 87 ff~Gl~lvG~GSayyHl~p~~~~llwDrLPM~iaf~~l~~~~~~erv~~r~g~~~l~~Ll~~g~~s-v~yw~~~~dlrpy 165 (289)
.-+|+++.++|=+.- +.|.....+.-=..--++=..+..+.++.+............+..++++. ...|-.-|++++.
T Consensus 56 I~agLalsa~GD~LL-~~p~~~~f~~Gl~aFLlaHl~y~~~~~~~~~~~~~~~~~~~~l~vv~~v~l~~lw~~lg~L~~P 134 (212)
T COG3714 56 IVAGLALSALGDALL-LLPGRLAFVAGLIAFLLAHLLYIGALLRSARTLSLWWPLPAALLVVGAVLLALLWPRLGELRIP 134 (212)
T ss_pred HHHHHHHHHHHHHHH-hCcchHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHhccccCcccc
Confidence 466777777775542 33332223332223333333444455554444432222122222223333 4455444689998
Q ss_pred hhhhhHHHHHHHHHHHHc--CCCCchhHHHHHH-HHHHHHHHHHHhcCHHHHhhcccccccchHHHHHHhHHHHHHHHHH
Q 022991 166 ALVQFVPCIAIPLMAILL--PPMYTHSTYWLWA-AGFYLLAKVEEAMDKPIYRWTHHIVSGHTLKHLCAAMVPVFLTLML 242 (289)
Q Consensus 166 ~~vQ~~p~l~i~~~~~~~--~~~~~~~~~~~~a-~~~yllAk~~e~~D~~ic~~~~~llsGHsLwHLlaAl~~~~l~~~l 242 (289)
+..=.+-...|...+... +.+...+...+.| -..+.++++....|+ .+-|.||-=..+..+|+....+
T Consensus 135 V~~yi~~l~~M~~~A~~~~l~~~t~~g~~~f~~s~~l~~~s~~vl~~~~---------~r~~i~~~~~~a~~~y~~gqfL 205 (212)
T COG3714 135 VAIYIAMLLVMVWAALELWLPTPTAAGAVAFAGSDALLGISNFVLADND---------YRLPIWWSYAAAQLLYTAGQFL 205 (212)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhhHhhcchh---------hcccchHHHHHHHHHHHHHHHH
Confidence 887655555555555553 3332234445555 788888888877666 2347788888888889888888
Q ss_pred Hhhhhc
Q 022991 243 AKRTIE 248 (289)
Q Consensus 243 ~~r~~~ 248 (289)
..|+..
T Consensus 206 ~~rs~~ 211 (212)
T COG3714 206 IGRSLY 211 (212)
T ss_pred HhccCC
Confidence 887754
No 23
>KOG3011 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=41.82 E-value=36 Score=32.36 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCchhhhhhhhH
Q 022991 83 GWACFFIGVAAVGVGSSYYHLEPNDARLVWDRLPM 117 (289)
Q Consensus 83 ~~~lff~Gl~lvG~GSayyHl~p~~~~llwDrLPM 117 (289)
+..-.++|.+.--+||..|||..|++.-+ +.||
T Consensus 109 ~~La~~aG~i~AD~~SGl~HWaaD~~Gsv--~tP~ 141 (293)
T KOG3011|consen 109 PALAAYAGYITADLGSGVYHWAADNYGSV--STPW 141 (293)
T ss_pred HHHHHHHHHHHHhhhcceeEeeccccCcc--ccch
Confidence 44558999999999999999999998764 5676
No 24
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=39.74 E-value=3.3e+02 Score=25.69 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCCchhhhhhhhHHHHHHHHHH
Q 022991 84 WACFFIGVAAVGVGSSYYHLEPNDARLVWDRLPMTIAFTSIIA 126 (289)
Q Consensus 84 ~~lff~Gl~lvG~GSayyHl~p~~~~llwDrLPM~iaf~~l~~ 126 (289)
...++.|...+ +|+.|-+...-++..++--+|........+.
T Consensus 141 ~v~i~~G~l~v-~g~~yvq~~~~~~~~ll~sl~~g~l~~~il~ 182 (284)
T TIGR00751 141 SVLVFFGPLAV-LGTQYLQAHRVDWVGILPAVATGLLACAVLN 182 (284)
T ss_pred HHHHHHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 44444454433 5566666666666666666666555544444
No 25
>TIGR01528 NMN_trans_PnuC nicotinamide mononucleotide transporter PnuC. The PnuC protein of E. coli is membrane protein responsible for nicotinamide mononucleotide transport, subject to regulation by interaction with the NadR (also called NadI) protein (see TIGR01526). This model defines a region corresponding to most of the length of PnuC, found primarily in pathogens. The extreme N- and C-terminal regions are poorly conserved and not included in the alignment and model.
Probab=38.05 E-value=1e+02 Score=27.32 Aligned_cols=105 Identities=21% Similarity=0.198 Sum_probs=52.7
Q ss_pred chhhHhhhhHHHHHHHHHHHHHHHhcccccccc-----chhh-hHHH--HHHHHHHHHHHhhhhhcCCCCCchhhhhhhh
Q 022991 45 PNTLNVVSNFPFLVIGIVGLVLCFHGNYFNLRL-----QGEL-WGWA--CFFIGVAAVGVGSSYYHLEPNDARLVWDRLP 116 (289)
Q Consensus 45 pn~~NvlSNlpFl~~gl~Gl~~~~~~~~~~~~~-----~~~~-~~~~--lff~Gl~lvG~GSayyHl~p~~~~llwDrLP 116 (289)
.+..|+..|+.|++..++|.+.+.|++..+.+. +... ..+. +....+..+++|-.+-| .++..-.+|-+-
T Consensus 45 ~lYgd~~lq~~y~~~~~yGw~~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~p~~Da~~ 122 (189)
T TIGR01528 45 GLYAEVLLQLFFVIANIYGLFAWKKNSQQEENGVTSGLKKLKGKGWTIILSTSVVLTVVIALILKF--IGDNFPWLDSIT 122 (189)
T ss_pred HHHHHHHHHHHHHHHHHHeeeeEeecCCcccchhhhhheeccHHHHHHHHHHHHHHHHHHHHHHHH--cCCCchHHHHHH
Confidence 455789999999999999987654432111101 0001 1122 22222222333333333 455667788887
Q ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhhhhc
Q 022991 117 MTIAFTSIIAIFIIERIDEHKGTVSLIPLLLAGVVSILYWSF 158 (289)
Q Consensus 117 M~iaf~~l~~~~~~erv~~r~g~~~l~~Ll~~g~~sv~yw~~ 158 (289)
.++.+.+.... .+|..+.+-. -++.-++++.-|..
T Consensus 123 t~~Siva~~l~--~~k~~E~W~~-----Wiivdii~i~L~~~ 157 (189)
T TIGR01528 123 FVIGIVAQILM--VRRYRENWIL-----WLLSNVVSIILWFL 157 (189)
T ss_pred HHHHHHHHHHH--HHHHHhhHHH-----HHHHHHHHHHHHHH
Confidence 77766554432 3333333332 23445555444443
No 26
>PF06197 DUF998: Protein of unknown function (DUF998); InterPro: IPR009339 This is a family of proteins with no known function.
Probab=37.52 E-value=2.5e+02 Score=23.62 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCC
Q 022991 83 GWACFFIGVAAVGVGSSYYHLEPND 107 (289)
Q Consensus 83 ~~~lff~Gl~lvG~GSayyHl~p~~ 107 (289)
.+.+...|+..++.| .|+.++..
T Consensus 73 ~~ll~~~g~~~i~~g--~fp~~~~~ 95 (184)
T PF06197_consen 73 AVLLALAGLGLILVG--LFPMDPPG 95 (184)
T ss_pred HHHHHHHHHHHHHhh--cCCCCCcc
Confidence 344555666655555 77777774
No 27
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=34.04 E-value=5e+02 Score=26.12 Aligned_cols=149 Identities=20% Similarity=0.229 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcccccccccccccCCchh---------hH-hhhhHHHHHHHHHHHHHHHhc---ccccc
Q 022991 9 WGVALICFIVLMIVTPAIPQSEEYHDFADQRKFFGIPNT---------LN-VVSNFPFLVIGIVGLVLCFHG---NYFNL 75 (289)
Q Consensus 9 ~~~~~~~~~~~~~~~p~ipq~~~yh~fAD~R~~~gIpn~---------~N-vlSNlpFl~~gl~Gl~~~~~~---~~~~~ 75 (289)
.|..+++..++++..---|-++.||+|-+++--+|++++ +| .+=-+.|+++| +- ..|+ ++.+.
T Consensus 15 ~gilLl~a~v~Ali~ANsp~~~~Y~~~~~~~~~~~~~~~~l~~~l~~wiNDgLMaiFFf~vG---LE-iKrE~~~GeL~~ 90 (388)
T PRK09561 15 GGILLIIAAALAMLMANSPTSGWYQDFLETPVQLRVGALEINKPLLLWINDGLMAVFFLLIG---LE-VKRELLEGSLAS 90 (388)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHcCcceeecccccCCCcHHHHHHhhHHHHHHHHHH---HH-HHHHHHcCCCCC
Confidence 455555555556666667878889999998765555433 33 33446777776 42 2332 22211
Q ss_pred ccchhhhHHHHHHHHHHHHHHhhhhh-cCCCCCchhhhhhhhHH--HHHHHHHHHHHHHHhccchhhHHHHHHHHH---H
Q 022991 76 RLQGELWGWACFFIGVAAVGVGSSYY-HLEPNDARLVWDRLPMT--IAFTSIIAIFIIERIDEHKGTVSLIPLLLA---G 149 (289)
Q Consensus 76 ~~~~~~~~~~lff~Gl~lvG~GSayy-Hl~p~~~~llwDrLPM~--iaf~~l~~~~~~erv~~r~g~~~l~~Ll~~---g 149 (289)
.+++ ..+-..-..|+..=+.==..+ |-+|....-. -.||+ +||+.-...+++.|++.... ..+.++.++ |
T Consensus 91 ~r~a-~lPi~AAlGGmivPAliy~~~n~~~~~~~~GW--aIP~ATDIAFalgvlallG~rvP~~Lr-vFLlaLAIvDDlg 166 (388)
T PRK09561 91 RRQA-ALPVIAAIGGMLVPALIYLLFNYADPVTREGW--AIPAATDIAFALGVLALLGSRVPVALK-IFLLALAIIDDLG 166 (388)
T ss_pred hHHH-HHHHHHHHhchHHHHHHHhheecCCCcccCcc--ccccHHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHHHhh
Confidence 1121 123222233333221110001 1122211111 25666 66766666777777765333 234444443 5
Q ss_pred HHHhhhhhccCCccch
Q 022991 150 VVSILYWSFFDDLRPY 165 (289)
Q Consensus 150 ~~sv~yw~~~~dlrpy 165 (289)
.+.++--.|++++...
T Consensus 167 AI~VIAlFYt~~i~~~ 182 (388)
T PRK09561 167 AIVIIALFYTSDLSMV 182 (388)
T ss_pred hHhheeeecCCCccHH
Confidence 5556656666664433
No 28
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=33.61 E-value=3.3e+02 Score=23.89 Aligned_cols=32 Identities=19% Similarity=0.244 Sum_probs=25.9
Q ss_pred cccccccCCchhhHhhhhHHHHHHHHHHHHHH
Q 022991 36 ADQRKFFGIPNTLNVVSNFPFLVIGIVGLVLC 67 (289)
Q Consensus 36 AD~R~~~gIpn~~NvlSNlpFl~~gl~Gl~~~ 67 (289)
..+-.++.+.=....++=..|.+.++.++...
T Consensus 66 ~l~~~~l~iHv~~~~~~ya~~~ia~~~al~~l 97 (214)
T PF01578_consen 66 ALQSPWLYIHVPLALLGYAAFAIAALAALLYL 97 (214)
T ss_pred hhhcccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455888988999999999999999998544
No 29
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=33.45 E-value=5.5e+02 Score=26.41 Aligned_cols=134 Identities=11% Similarity=0.030 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhhhhccCCccchhhhhhHHHHHHHHHHHH-------cCCCCch
Q 022991 117 MTIAFTSIIAIFIIERIDEHKGTVSLIPLLLAGVVSILYWSFFDDLRPYALVQFVPCIAIPLMAIL-------LPPMYTH 189 (289)
Q Consensus 117 M~iaf~~l~~~~~~erv~~r~g~~~l~~Ll~~g~~sv~yw~~~~dlrpy~~vQ~~p~l~i~~~~~~-------~~~~~~~ 189 (289)
+.-++.+++...++|+.|.|.+.-.-..+.+.+..........+...-+....++--+..++.... ..|+..+
T Consensus 71 iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~R 150 (485)
T KOG0569|consen 71 IGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLR 150 (485)
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhc
Confidence 334455577778888888884432222222222222222222233333444444322222221111 1233333
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHhhcccccccchHHHHHHhHHHH--HHHHHHHhhhhcccccccc
Q 022991 190 STYWLWAAGFYLLAKVEEAMDKPIYRWTHHIVSGHTLKHLCAAMVPV--FLTLMLAKRTIETERVSLL 255 (289)
Q Consensus 190 ~~~~~~a~~~yllAk~~e~~D~~ic~~~~~llsGHsLwHLlaAl~~~--~l~~~l~~r~~~~~~~~~~ 255 (289)
+..=..--..+.++.++- .++. ++.+++++.+||++-+.... .+...+..+-++.+|.-..
T Consensus 151 G~~g~~~~~~~~~g~ll~----~~~~-l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~ 213 (485)
T KOG0569|consen 151 GALGTLLQIGVVIGILLG----QVLG-LPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLI 213 (485)
T ss_pred cHHHHHHHHHHHHHHHHH----HHHc-cHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHH
Confidence 322222223334444432 2332 35678999999999887554 3333334455555555444
No 30
>TIGR03663 conserved hypothetical protein TIGR03663. Members of this protein family, uncommon and rather sporadically distributed, are found almost always in the same genomes as members of family TIGR03662, and frequently as a nearby gene. Members show some N-terminal sequence similarity with Pfam family pfam02366, dolichyl-phosphate-mannose-protein mannosyltransferase. The few invariant residues in this family, found toward the N-terminus, include a dipeptide DE, a tripeptide HGP, and two different Arg residues. Up to three members may be found in a genome. The function is unknown.
Probab=31.27 E-value=4.3e+02 Score=26.56 Aligned_cols=72 Identities=11% Similarity=0.180 Sum_probs=32.4
Q ss_pred hhhHHHHHHHHHHHHHHHhccccccccchhhhHHHHHHHHHHHHHHhhhhhcCCCCCchhhhhhhhHHHHHHHHHHHHHH
Q 022991 51 VSNFPFLVIGIVGLVLCFHGNYFNLRLQGELWGWACFFIGVAAVGVGSSYYHLEPNDARLVWDRLPMTIAFTSIIAIFII 130 (289)
Q Consensus 51 lSNlpFl~~gl~Gl~~~~~~~~~~~~~~~~~~~~~lff~Gl~lvG~GSayyHl~p~~~~llwDrLPM~iaf~~l~~~~~~ 130 (289)
..-+|.++.+..|++...++++.+ .+...+.-..++++++.+.+=|. .++ ..-|=-+|+...++.+.+..+.
T Consensus 270 ~~~~P~~~~~~~~l~~~~~~r~~~--~~~~~~~~f~~~W~~~~~v~ys~----~~~--K~Pwy~l~~~~PlAll~g~~l~ 341 (439)
T TIGR03663 270 LYELPALIFAAAGVLGFLANRYAT--DKRRSFFLFACYWTLASLLFYSY----IQE--KVPWLVVHILVPLAILAAVGLS 341 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc--cCcchHHHHHHHHHHHHHHHHhh----ccc--CCcchhHHHHHhHHHHHHHHHH
Confidence 344677766555554322221101 11112222345555555555452 222 4445556665555555555554
No 31
>PF07695 7TMR-DISM_7TM: 7TM diverse intracellular signalling; InterPro: IPR011623 This entry represents the transmembrane region of the 7TM-DISM (7TM Receptors with Diverse Intracellular Signalling Modules) [].
Probab=29.41 E-value=3.4e+02 Score=22.66 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=19.8
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHhc
Q 022991 184 PPMYTHSTYWLWAAGFYLLAKVEEAM 209 (289)
Q Consensus 184 ~~~~~~~~~~~~a~~~yllAk~~e~~ 209 (289)
+++...++....|.+.+.++-+...+
T Consensus 146 ~~~~~~a~~~~~~~~~~~~~~~~~~l 171 (205)
T PF07695_consen 146 RKGNRPARYFLIGWLLFLLSSLIDIL 171 (205)
T ss_pred HcCCccHHHHHHHHHHHHHHHHHHHH
Confidence 56666778888888888888877554
No 32
>PRK15487 O-antigen ligase RfaL; Provisional
Probab=29.26 E-value=5.7e+02 Score=25.31 Aligned_cols=19 Identities=5% Similarity=0.116 Sum_probs=14.0
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 022991 50 VVSNFPFLVIGIVGLVLCF 68 (289)
Q Consensus 50 vlSNlpFl~~gl~Gl~~~~ 68 (289)
..-|+.+.+..+.+++...
T Consensus 32 ~~k~~~~~l~~~~~L~~l~ 50 (400)
T PRK15487 32 RYKHLIIILMTITAIYYLS 50 (400)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5668888888888887543
No 33
>PF12129 Phtf-FEM1B_bdg: Male germ-cell putative homeodomain transcription factor; InterPro: IPR021980 This domain is found in bacteria and eukaryotes, and is typically between 101 and 140 amino acids in length. Phtf proteins do not display any sequence similarity to known or predicted proteins, but their conservation among species suggests an essential function. The 84 kDa Phtf1 protein is an integral membrane protein, anchored to a cell membrane by six to eight trans-membrane domains, that is associated with a domain of the endoplasmic reticulum (ER) juxtaposed to the Golgi apparatus. It is present during meiosis and spermiogenesis, and, by the end of spermiogenesis, is released from the mature spermatozoon within the residual bodies []. Phtf1 enhances the binding of FEM1B -feminisation homologue 1B - to cell membranes. Fem-1 was initially identified in the signaling pathway for sex determination, as well as being implicated in apoptosis, but its biochemical role is still unclear, and neither FEM1B nor PHTF1 is directly implicated in apoptosis in spermatogenesis. It is the ANK domain of FEM1B that is necessary for the interaction with the N-terminal region of Phtf1 [].
Probab=28.78 E-value=3.9e+02 Score=23.66 Aligned_cols=86 Identities=16% Similarity=0.102 Sum_probs=45.5
Q ss_pred hhhhhcCCCCCchhhhhhhhHHHHHHHHHHHHH-HHHhccchhhHHHHHHHHH-HHHHhhhhhccCCccchhhhhhHHHH
Q 022991 97 GSSYYHLEPNDARLVWDRLPMTIAFTSIIAIFI-IERIDEHKGTVSLIPLLLA-GVVSILYWSFFDDLRPYALVQFVPCI 174 (289)
Q Consensus 97 GSayyHl~p~~~~llwDrLPM~iaf~~l~~~~~-~erv~~r~g~~~l~~Ll~~-g~~sv~yw~~~~dlrpy~~vQ~~p~l 174 (289)
||+..|.+|.....-.=|..+.-+....++.-. .+..+.+.-. .++.|-+. .+..++|....++..-...=-++|+.
T Consensus 56 GStF~KAKP~~~~~~l~~kgl~R~lf~P~~~~WW~Q~ts~~if~-~ll~LY~lQv~~v~lY~~~~~~~~v~~sEv~~Pi~ 134 (159)
T PF12129_consen 56 GSTFPKAKPESPWTSLTRKGLVRVLFFPFFSQWWIQQTSPWIFM-FLLLLYLLQVIAVVLYFIDPEPHVVSASEVFGPIC 134 (159)
T ss_pred eecccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHhheeecCccccCCHHHHHHHHH
Confidence 999999999998777777777766666555433 3443332221 11111111 33334454432221111111267887
Q ss_pred HHHHHHHHc
Q 022991 175 AIPLMAILL 183 (289)
Q Consensus 175 ~i~~~~~~~ 183 (289)
++.++....
T Consensus 135 LmLlLg~VH 143 (159)
T PF12129_consen 135 LMLLLGTVH 143 (159)
T ss_pred HHHHHHHhh
Confidence 777776654
No 34
>PHA03242 envelope glycoprotein M; Provisional
Probab=25.45 E-value=3.3e+02 Score=27.78 Aligned_cols=11 Identities=27% Similarity=0.169 Sum_probs=6.9
Q ss_pred eeecccccccc
Q 022991 276 YECTYTSVPVA 286 (289)
Q Consensus 276 ~~~~~~~~~~~ 286 (289)
+|.-|+++..+
T Consensus 405 ~e~iYd~v~~~ 415 (428)
T PHA03242 405 GEPIYDEVAPD 415 (428)
T ss_pred CCccccccCCC
Confidence 66667777544
No 35
>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type.
Probab=25.31 E-value=2e+02 Score=26.55 Aligned_cols=49 Identities=16% Similarity=0.282 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHhhcccccccchHHHHHHhHHHHHHHHHHH
Q 022991 192 YWLWAAGFYLLAKVEEAMDKPIYRWTHHIVSGHTLKHLCAAMVPVFLTLMLA 243 (289)
Q Consensus 192 ~~~~a~~~yllAk~~e~~D~~ic~~~~~llsGHsLwHLlaAl~~~~l~~~l~ 243 (289)
....+.+.++++++++..|.++++.. .+-=.+=|++.|++....-....
T Consensus 38 ~~~Y~~l~~~l~~i~~~~~~~~~~~i---~~yg~~~h~imal~li~~Gi~ti 86 (224)
T PF09930_consen 38 ALGYGLLFLLLGYIASPINMEIYEFI---LRYGMVIHLIMALLLIYAGIYTI 86 (224)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHH
Confidence 34567788999999999998888754 34456778888887755444333
No 36
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.99 E-value=22 Score=35.39 Aligned_cols=20 Identities=25% Similarity=0.524 Sum_probs=17.3
Q ss_pred ccccccccccCCchhhHhhh
Q 022991 33 HDFADQRKFFGIPNTLNVVS 52 (289)
Q Consensus 33 h~fAD~R~~~gIpn~~NvlS 52 (289)
-.|||.|+|.|+|+.+|+-|
T Consensus 380 T~~aDtRSW~~LP~~i~~AT 399 (449)
T COG3014 380 TTFADTRSWSILPHKIYLAT 399 (449)
T ss_pred ccCccchhhhccchhheeee
Confidence 35899999999999998755
No 37
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=22.31 E-value=49 Score=23.01 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=13.0
Q ss_pred cchhhHHHHHHHHHHHH-HHHHcCCC
Q 022991 2 RKRTVYAWGVALICFIV-LMIVTPAI 26 (289)
Q Consensus 2 ~~~~~~~~~~~~~~~~~-~~~~~p~i 26 (289)
+|.+..+.|++++++++ ++++.|-+
T Consensus 13 ~~nk~a~~gl~il~~~vl~ai~~p~~ 38 (56)
T PF12911_consen 13 RRNKLAVIGLIILLILVLLAIFAPFI 38 (56)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHHc
Confidence 45556666555544444 45555554
No 38
>PF10131 PTPS_related: 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein; InterPro: IPR018776 This entry is found in various bacterial and archaeal hypothetical membrane proteins, as well as in tetratricopeptide TPR_2 repeat protein. Its function has not yet been established, though it shows similarity to 6-pyruvoyl-tetrahydropterin synthase.
Probab=21.36 E-value=6.3e+02 Score=26.66 Aligned_cols=38 Identities=16% Similarity=0.254 Sum_probs=22.4
Q ss_pred hhhcCCCCCchh-hhhhhhHHHHHHHHHHHHHHHHhccc
Q 022991 99 SYYHLEPNDARL-VWDRLPMTIAFTSIIAIFIIERIDEH 136 (289)
Q Consensus 99 ayyHl~p~~~~l-lwDrLPM~iaf~~l~~~~~~erv~~r 136 (289)
.+++..|-..-| -|-=++++..+++++.....++.-.|
T Consensus 244 ~~l~~lP~~~l~~p~RFl~i~~~~~~ll~a~~~~~~~~k 282 (616)
T PF10131_consen 244 PILKHLPLLQLQFPWRFLSIASVFLALLGALLLWRILKK 282 (616)
T ss_pred HHHHhChHhheeccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777777766 34445666556666655555555444
No 39
>PHA03237 envelope glycoprotein M; Provisional
Probab=20.83 E-value=4.9e+02 Score=26.51 Aligned_cols=51 Identities=16% Similarity=0.092 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHhhcc-cccccchHHHHHHhHHHHHHHHHH
Q 022991 192 YWLWAAGFYLLAKVEEAMDKPIYRWTH-HIVSGHTLKHLCAAMVPVFLTLML 242 (289)
Q Consensus 192 ~~~~a~~~yllAk~~e~~D~~ic~~~~-~llsGHsLwHLlaAl~~~~l~~~l 242 (289)
++..-++.-.++....--|+.+++..+ +--+-|+=-++.-|+.+.+.+.|+
T Consensus 292 ~lG~lia~~~l~~p~~~Y~~~f~~~v~~~~~~l~~~v~~~Laviail~l~m~ 343 (424)
T PHA03237 292 ALGLLIAYGMLAVTTHDYFNRFYYAVGVQAPNLRLACKLVLAIFAVIIVIML 343 (424)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHhhccCccHHHHHHHHHHHHHHHHHHHH
Confidence 344444555566666666666665442 123445555666666555444443
No 40
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=20.46 E-value=40 Score=28.08 Aligned_cols=17 Identities=29% Similarity=0.784 Sum_probs=14.2
Q ss_pred CCcccccccccc--cccCC
Q 022991 28 QSEEYHDFADQR--KFFGI 44 (289)
Q Consensus 28 q~~~yh~fAD~R--~~~gI 44 (289)
.++.+|+++|+| +..|+
T Consensus 70 as~~FhQWrD~R~~tVyGL 88 (111)
T cd01206 70 TSQKFGQWADSRANTVYGL 88 (111)
T ss_pred cccccccccccccceeeec
Confidence 378899999999 77775
No 41
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=20.28 E-value=1.2e+02 Score=26.78 Aligned_cols=43 Identities=19% Similarity=0.212 Sum_probs=23.5
Q ss_pred HHhHHHHHHHHHHHhh--hhcccccccccce--eeeeeEeeccCcccc
Q 022991 230 CAAMVPVFLTLMLAKR--TIETERVSLLKTW--RIRWTRRKENDSKVV 273 (289)
Q Consensus 230 laAl~~~~l~~~l~~r--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 273 (289)
.+.+.+|++++.++-| +++..|++++.+= ++.-+-. |.|++||
T Consensus 105 s~l~i~yfvir~~R~r~~~rktRkYgvl~~~~~~~Em~pL-~~ddede 151 (163)
T PF06679_consen 105 SALAILYFVIRTFRLRRRNRKTRKYGVLTTRAENVEMAPL-EEDDEDE 151 (163)
T ss_pred HHHHHHHHHHHHHhhccccccceeecccCCCcccceeccc-CCCcccc
Confidence 3445667777776544 3455677777654 3333334 4444443
No 42
>TIGR02327 int_mem_ywzB conserved hypothetical integral membrane protein. Members of this protein family are small, typically about 80 residues in length, and are highly hydrophobic. The gene is found so far only in a subset of the Firmicutes in association with genes of the ATP synthase F1 complex or NADH-quinone oxidoreductase. This family includes ywzB from Bacillus subtilis; Pfam model pfam06612 describes the same family as Protein of unknown function DUF1146.
Probab=20.04 E-value=2.7e+02 Score=21.06 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=17.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHhcc
Q 022991 49 NVVSNFPFLVIGIVGLVLCFHGN 71 (289)
Q Consensus 49 NvlSNlpFl~~gl~Gl~~~~~~~ 71 (289)
..+|++.|+..+.+.+...+-++
T Consensus 3 ~ii~hl~fI~lsf~alq~i~~ek 25 (68)
T TIGR02327 3 AIVSHLLFIGISYWALQVIDWEK 25 (68)
T ss_pred ehHHHHHHHHHHHHHHHHhhHHH
Confidence 46899999999998876544443
Done!