Query 022991
Match_columns 289
No_of_seqs 113 out of 133
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 14:30:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022991.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022991hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 18.2 5.1E+02 0.018 23.0 12.2 21 119-139 68-88 (491)
2 2lx0_A Membrane fusion protein 11.5 1.5E+02 0.0051 18.1 2.2 16 223-238 2-17 (32)
3 3arc_K Photosystem II reaction 10.3 2.6E+02 0.0088 18.0 3.0 27 110-136 11-37 (37)
4 1ihs_I Hirutonin; hydrolase(se 9.4 85 0.0029 18.5 0.5 10 27-36 4-13 (26)
5 1evh_A WH1 domain, protein (ME 7.7 88 0.003 24.4 0.0 17 28-44 73-89 (112)
6 1egx_A VAsp, vasodilator-stimu 7.1 97 0.0033 24.3 0.0 18 27-44 74-91 (115)
7 3kp9_A Vkorc1/thioredoxin doma 6.7 3.8E+02 0.013 24.1 3.8 8 40-47 66-73 (291)
8 3h90_A Ferrous-iron efflux pum 6.6 8.6E+02 0.029 20.9 6.1 26 44-69 33-58 (283)
9 1xio_A Anabaena sensory rhodop 6.5 1.2E+03 0.042 20.3 8.4 27 130-156 26-52 (261)
10 5gds_I Hirunorm V; serine prot 6.4 1.3E+02 0.0046 17.7 0.4 11 26-36 8-18 (26)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=18.21 E-value=5.1e+02 Score=23.05 Aligned_cols=21 Identities=5% Similarity=0.096 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHhccchhh
Q 022991 119 IAFTSIIAIFIIERIDEHKGT 139 (289)
Q Consensus 119 iaf~~l~~~~~~erv~~r~g~ 139 (289)
.++.++++-.++||.|.|+..
T Consensus 68 ~~iG~~~~G~laDr~GRk~~l 88 (491)
T 4gc0_A 68 CIIGGALGGYCSNRFGRRDSL 88 (491)
T ss_dssp HHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHH
Confidence 344556666777888877654
No 2
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=11.55 E-value=1.5e+02 Score=18.07 Aligned_cols=16 Identities=25% Similarity=0.412 Sum_probs=12.4
Q ss_pred cchHHHHHHhHHHHHH
Q 022991 223 GHTLKHLCAAMVPVFL 238 (289)
Q Consensus 223 GHsLwHLlaAl~~~~l 238 (289)
-|+.|.+.+++...+-
T Consensus 2 khtiweviaglvallt 17 (32)
T 2lx0_A 2 KHTIWEVIAGLVALLT 17 (32)
T ss_dssp CSSSHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHH
Confidence 3899999999876543
No 3
>3arc_K Photosystem II reaction center protein K; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_K* 1s5l_K* 2axt_K* 3bz1_K* 3bz2_K* 3kzi_K* 3prq_K* 3prr_K* 3a0b_K* 3a0h_K*
Probab=10.26 E-value=2.6e+02 Score=18.01 Aligned_cols=27 Identities=15% Similarity=0.107 Sum_probs=18.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhccc
Q 022991 110 LVWDRLPMTIAFTSIIAIFIIERIDEH 136 (289)
Q Consensus 110 llwDrLPM~iaf~~l~~~~~~erv~~r 136 (289)
-+.|.+|++=.+-.+++.+....+|.|
T Consensus 11 PivDvmPiIPv~f~lLafvWQAav~fR 37 (37)
T 3arc_K 11 PLVDVLPVIPVLFLALAFVWQAAVGFR 37 (37)
T ss_dssp HHHHHGGGHHHHHHHHHHHHHHHTTTC
T ss_pred hHHHHhchHHHHHHHHHHHHHHhhcCC
Confidence 367888887777777776666555543
No 4
>1ihs_I Hirutonin; hydrolase(serine proteinase), hydrolase-hydrolase inhibitor; HET: DPN OPR; 2.00A {Homo sapiens}
Probab=9.37 E-value=85 Score=18.54 Aligned_cols=10 Identities=40% Similarity=0.494 Sum_probs=8.3
Q ss_pred CCCccccccc
Q 022991 27 PQSEEYHDFA 36 (289)
Q Consensus 27 pq~~~yh~fA 36 (289)
||+.+.|+|-
T Consensus 4 Pqshn~gDFe 13 (26)
T 1ihs_I 4 XQSHNDGDFE 13 (26)
T ss_pred cccCCCCCCC
Confidence 7888888874
No 5
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=7.66 E-value=88 Score=24.39 Aligned_cols=17 Identities=24% Similarity=0.847 Sum_probs=14.4
Q ss_pred CCcccccccccccccCC
Q 022991 28 QSEEYHDFADQRKFFGI 44 (289)
Q Consensus 28 q~~~yh~fAD~R~~~gI 44 (289)
..+.+|+|.|.|..+|+
T Consensus 73 ~~p~Fh~w~~~~~~~GL 89 (112)
T 1evh_A 73 ATQTFHQWRDARQVYGL 89 (112)
T ss_dssp CSSSEEEEECSSCEEEE
T ss_pred cCccceeEecCCEEEEE
Confidence 46788999999988876
No 6
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4
Probab=7.07 E-value=97 Score=24.30 Aligned_cols=18 Identities=22% Similarity=0.746 Sum_probs=14.9
Q ss_pred CCCcccccccccccccCC
Q 022991 27 PQSEEYHDFADQRKFFGI 44 (289)
Q Consensus 27 pq~~~yh~fAD~R~~~gI 44 (289)
...+.+|+|.|.|..+|+
T Consensus 74 ~~~p~FH~w~~~~~~~GL 91 (115)
T 1egx_A 74 QATPNFHQWRDARQVWGL 91 (115)
T ss_dssp CSSTTEEEEESSSCEEEE
T ss_pred ecCccceEEecCCEEEEE
Confidence 346788999999988876
No 7
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}
Probab=6.72 E-value=3.8e+02 Score=24.11 Aligned_cols=8 Identities=50% Similarity=1.227 Sum_probs=4.9
Q ss_pred cccCCchh
Q 022991 40 KFFGIPNT 47 (289)
Q Consensus 40 ~~~gIpn~ 47 (289)
.++|+||.
T Consensus 66 ~~fGiP~~ 73 (291)
T 3kp9_A 66 EFLGIPTA 73 (291)
T ss_dssp EETTEEHH
T ss_pred hhcCCcHH
Confidence 45777664
No 8
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=6.55 E-value=8.6e+02 Score=20.90 Aligned_cols=26 Identities=0% Similarity=0.111 Sum_probs=14.8
Q ss_pred CchhhHhhhhHHHHHHHHHHHHHHHh
Q 022991 44 IPNTLNVVSNFPFLVIGIVGLVLCFH 69 (289)
Q Consensus 44 Ipn~~NvlSNlpFl~~gl~Gl~~~~~ 69 (289)
++++++.+++..=.++.++|++...|
T Consensus 33 laDa~hsl~D~~~~~~~l~~~~~s~~ 58 (283)
T 3h90_A 33 LAALVDSLVDIGASLTNLLVVRYSLQ 58 (283)
T ss_dssp CSTTTHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34455555555555567777765444
No 9
>1xio_A Anabaena sensory rhodopsin; signaling protein, photoreceptor; HET: RET PEE; 2.00A {Nostoc SP} SCOP: f.13.1.1
Probab=6.49 E-value=1.2e+03 Score=20.29 Aligned_cols=27 Identities=7% Similarity=0.026 Sum_probs=14.7
Q ss_pred HHHhccchhhHHHHHHHHHHHHHhhhh
Q 022991 130 IERIDEHKGTVSLIPLLLAGVVSILYW 156 (289)
Q Consensus 130 ~erv~~r~g~~~l~~Ll~~g~~sv~yw 156 (289)
+.+++.+.+.....+.++.+++++.|.
T Consensus 26 ~~~v~~~~R~~~~~~~lit~iAa~~Y~ 52 (261)
T 1xio_A 26 SRNPRGVPQYEYLVAMFIPIWSGLAYM 52 (261)
T ss_dssp HTSCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCcceeeehHHHHHHHHHHHHHH
Confidence 334334444555556666666666665
No 10
>5gds_I Hirunorm V; serine protease-inhibitor complex, thrombin, thrombin synthe inhibitors, antithrombotics, hirunorms; HET: CHG NAL ALC DGL NAG; 2.10A {Homo sapiens} PDB: 4thn_I*
Probab=6.44 E-value=1.3e+02 Score=17.73 Aligned_cols=11 Identities=27% Similarity=0.474 Sum_probs=8.8
Q ss_pred CCCCccccccc
Q 022991 26 IPQSEEYHDFA 36 (289)
Q Consensus 26 ipq~~~yh~fA 36 (289)
-||+.+.|+|-
T Consensus 8 kPqshn~gDfe 18 (26)
T 5gds_I 8 XPESHXGGDYE 18 (26)
T ss_pred CcccccCCCcc
Confidence 58898888874
Done!