Query 022991
Match_columns 289
No_of_seqs 113 out of 133
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 14:31:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022991.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022991hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtk1 f.23.36.1 (K:10-46) Ph 14.0 78 0.0057 18.8 3.0 26 111-136 12-37 (37)
2 d1jb0i_ f.23.17.1 (I:) Subunit 6.9 66 0.0048 19.2 0.7 16 169-184 8-23 (38)
3 d2i5nm1 f.26.1.1 (M:1-323) M ( 4.7 5.3E+02 0.038 21.8 5.7 49 190-240 110-159 (323)
4 d1vjea_ d.185.1.2 (A:) Autoind 4.7 1.2E+02 0.0089 23.3 1.3 12 222-233 48-59 (149)
5 d1j6wa_ d.185.1.2 (A:) Autoind 4.5 1.3E+02 0.0094 23.4 1.3 11 222-232 50-60 (161)
6 d2fomb1 b.47.1.3 (B:18-167) NS 4.4 70 0.0051 24.8 -0.4 12 224-235 30-41 (150)
7 d2fp7b1 b.47.1.3 (B:19-170) NS 4.4 71 0.0051 24.8 -0.4 11 224-234 29-39 (152)
8 d1j98a_ d.185.1.2 (A:) Autoind 4.3 1.4E+02 0.0099 23.1 1.3 12 222-233 49-60 (154)
9 d1j6xa_ d.185.1.2 (A:) Autoind 4.2 1.4E+02 0.01 23.0 1.3 11 222-232 53-63 (151)
10 d1eysm_ f.26.1.1 (M:) M (mediu 4.2 6.1E+02 0.045 21.3 5.7 49 190-240 111-160 (318)
No 1
>d2axtk1 f.23.36.1 (K:10-46) Photosystem II reaction center protein K, PsbK {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=14.04 E-value=78 Score=18.81 Aligned_cols=26 Identities=15% Similarity=0.141 Sum_probs=18.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhccc
Q 022991 111 VWDRLPMTIAFTSIIAIFIIERIDEH 136 (289)
Q Consensus 111 lwDrLPM~iaf~~l~~~~~~erv~~r 136 (289)
+.|.+|++=.+-.+++.+....+|.|
T Consensus 12 ivdvlPiIPv~f~lLafVWQAaV~Fr 37 (37)
T d2axtk1 12 LVDVLPVIPVLFLALAFVWQAAVGFR 37 (37)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHhccHHHHHHHHHHHHHHHhccC
Confidence 57888888777777777766666554
No 2
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=6.88 E-value=66 Score=19.22 Aligned_cols=16 Identities=44% Similarity=0.945 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHHcC
Q 022991 169 QFVPCIAIPLMAILLP 184 (289)
Q Consensus 169 Q~~p~l~i~~~~~~~~ 184 (289)
+|+|-+.||++.++.|
T Consensus 8 syLPwI~iPvv~wl~p 23 (38)
T d1jb0i_ 8 SFLPWIFIPVVCWLMP 23 (38)
T ss_dssp TTHHHHHHHHHHTHHH
T ss_pred HhcchhHHHHHHHHHH
Confidence 4778888888877654
No 3
>d2i5nm1 f.26.1.1 (M:1-323) M (medium) subunit {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=4.73 E-value=5.3e+02 Score=21.77 Aligned_cols=49 Identities=20% Similarity=0.133 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCH-HHHhhcccccccchHHHHHHhHHHHHHHH
Q 022991 190 STYWLWAAGFYLLAKVEEAMDK-PIYRWTHHIVSGHTLKHLCAAMVPVFLTL 240 (289)
Q Consensus 190 ~~~~~~a~~~yllAk~~e~~D~-~ic~~~~~llsGHsLwHLlaAl~~~~l~~ 240 (289)
+..|..+..+...|.+.|.+-. ++|..+| ++.|-=|=-.+|+..|+.+.
T Consensus 110 GG~W~i~~f~~~~s~~~W~~R~~e~ar~LG--mG~Hva~AFsaAI~~y~~L~ 159 (323)
T d2i5nm1 110 GGWWLMAGLFMTLSLGSWWIRVYSRARALG--LGTHIAWNFAAAIFFVLCIG 159 (323)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CCSHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHHHHHh
Confidence 5778888888888998887654 7888898 89898888888888876654
No 4
>d1vjea_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS {Deinococcus radiodurans [TaxId: 1299]}
Probab=4.72 E-value=1.2e+02 Score=23.26 Aligned_cols=12 Identities=50% Similarity=0.598 Sum_probs=9.4
Q ss_pred ccchHHHHHHhH
Q 022991 222 SGHTLKHLCAAM 233 (289)
Q Consensus 222 sGHsLwHLlaAl 233 (289)
+-||+.|++|..
T Consensus 48 ~~HTlEHL~A~~ 59 (149)
T d1vjea_ 48 AIHTLEHLLAGY 59 (149)
T ss_dssp HHHHHHHHHHHH
T ss_pred chhHHHHHHHHH
Confidence 459999998763
No 5
>d1j6wa_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS {Haemophilus influenzae [TaxId: 727]}
Probab=4.50 E-value=1.3e+02 Score=23.40 Aligned_cols=11 Identities=55% Similarity=0.658 Sum_probs=9.0
Q ss_pred ccchHHHHHHh
Q 022991 222 SGHTLKHLCAA 232 (289)
Q Consensus 222 sGHsLwHLlaA 232 (289)
+-||+.||+|.
T Consensus 50 ~lHTlEHL~At 60 (161)
T d1j6wa_ 50 GIHTLEHLFAG 60 (161)
T ss_dssp HHHHHHHHHHH
T ss_pred chhHHHHHHHH
Confidence 45999999875
No 6
>d2fomb1 b.47.1.3 (B:18-167) NS3 protease {Dengue virus type 2 [TaxId: 11060]}
Probab=4.43 E-value=70 Score=24.78 Aligned_cols=12 Identities=33% Similarity=0.429 Sum_probs=9.2
Q ss_pred chHHHHHHhHHH
Q 022991 224 HTLKHLCAAMVP 235 (289)
Q Consensus 224 HsLwHLlaAl~~ 235 (289)
||+||+--+..+
T Consensus 30 HTmWHVTrGa~l 41 (150)
T d2fomb1 30 HTMWHVTRGAVL 41 (150)
T ss_dssp EEEHHHHTTCCE
T ss_pred EEeeeecCCceE
Confidence 999998766543
No 7
>d2fp7b1 b.47.1.3 (B:19-170) NS3 protease {West nile virus [TaxId: 11082]}
Probab=4.39 E-value=71 Score=24.80 Aligned_cols=11 Identities=36% Similarity=0.386 Sum_probs=8.8
Q ss_pred chHHHHHHhHH
Q 022991 224 HTLKHLCAAMV 234 (289)
Q Consensus 224 HsLwHLlaAl~ 234 (289)
||+||+--+..
T Consensus 29 HTmWHVTrGa~ 39 (152)
T d2fp7b1 29 HTLWHTTKGAA 39 (152)
T ss_dssp EEEHHHHTTCC
T ss_pred EEeeeecCCce
Confidence 99999876654
No 8
>d1j98a_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS {Bacillus subtilis [TaxId: 1423]}
Probab=4.32 E-value=1.4e+02 Score=23.09 Aligned_cols=12 Identities=50% Similarity=0.520 Sum_probs=9.4
Q ss_pred ccchHHHHHHhH
Q 022991 222 SGHTLKHLCAAM 233 (289)
Q Consensus 222 sGHsLwHLlaAl 233 (289)
+-||+.||+|..
T Consensus 49 ~lHTlEHL~At~ 60 (154)
T d1j98a_ 49 TIHTLEHLLAFT 60 (154)
T ss_dssp HHHHHHHHHHHH
T ss_pred chHHHHHHHHHH
Confidence 459999998753
No 9
>d1j6xa_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS {Helicobacter pylori [TaxId: 210]}
Probab=4.24 E-value=1.4e+02 Score=22.95 Aligned_cols=11 Identities=55% Similarity=0.694 Sum_probs=9.1
Q ss_pred ccchHHHHHHh
Q 022991 222 SGHTLKHLCAA 232 (289)
Q Consensus 222 sGHsLwHLlaA 232 (289)
+-||+.||+|.
T Consensus 53 ~lHTlEHL~At 63 (151)
T d1j6xa_ 53 SLHSLEHLVAE 63 (151)
T ss_dssp HHHHHHHHHHH
T ss_pred chhHHHHHHHH
Confidence 45999999875
No 10
>d1eysm_ f.26.1.1 (M:) M (medium) subunit {Thermochromatium tepidum [TaxId: 1050]}
Probab=4.15 E-value=6.1e+02 Score=21.29 Aligned_cols=49 Identities=18% Similarity=0.088 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcCH-HHHhhcccccccchHHHHHHhHHHHHHHH
Q 022991 190 STYWLWAAGFYLLAKVEEAMDK-PIYRWTHHIVSGHTLKHLCAAMVPVFLTL 240 (289)
Q Consensus 190 ~~~~~~a~~~yllAk~~e~~D~-~ic~~~~~llsGHsLwHLlaAl~~~~l~~ 240 (289)
+..|..+..+...|...|.+-. ++|..+| ++-|--|=-.+|+.+|+.+.
T Consensus 111 GG~W~i~~~~~~~s~~~W~~R~~e~ar~LG--mg~hv~~AF~~aI~~y~~l~ 160 (318)
T d1eysm_ 111 GGWWLIAGLFLTLSILLWWVRTYKRAEALG--MSQHLSWAFAAAIFFYLVLG 160 (318)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTTS--CCTHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHHHHHh
Confidence 5678888888889998887654 7888888 88898888888888876554
Done!