BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022992
(289 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QQE|A Chain A, Crystal Structure Of The Vesicular Transport Protein Sec17
Length = 292
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 133/244 (54%), Gaps = 2/244 (0%)
Query: 28 KYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT- 86
K+E+AADL +AA ++L K + AG +++K A+ K ++ EA YV+A C+K
Sbjct: 32 KFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG 91
Query: 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE-HNIEQTIVFFEKAADMFQNE 145
+S A+ LE A+ +F G+ A + E+ E+ E++ H+ + I +E A + + +
Sbjct: 92 NSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD 151
Query: 146 EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC 205
+ +N+C K A A QY ++ +IY ++ + S+ N L ++ +K + L G+CQL
Sbjct: 152 QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA 211
Query: 206 KGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDP 265
D VA L+ Q DP F+ +RE L + +++E D + ++ KEFD+ LD
Sbjct: 212 ATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271
Query: 266 WKTT 269
WK T
Sbjct: 272 WKIT 275
>pdb|2IFU|A Chain A, Crystal Structure Of A Gamma-Snap From Danio Rerio
pdb|2IFU|B Chain B, Crystal Structure Of A Gamma-Snap From Danio Rerio
pdb|2IFU|C Chain C, Crystal Structure Of A Gamma-Snap From Danio Rerio
pdb|2IFU|D Chain D, Crystal Structure Of A Gamma-Snap From Danio Rerio
Length = 307
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 104/241 (43%), Gaps = 30/241 (12%)
Query: 29 YEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK-TS 87
Y+ AA + KAA +FK AK ++A Y++ A H S AA+A+ A K
Sbjct: 32 YDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGXXLKDLQR 91
Query: 88 SNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV 147
EA+ +E+A + + G AA +L E ++ + + +++AA +F+NEE
Sbjct: 92 XPEAVQYIEKASVXYVENGTPDTAAXALDRAGKLXEP-LDLSKAVHLYQQAAAVFENEER 150
Query: 148 TTSANQC----------KQKVAQYAAELEQ---YHKSIEIYEEIARQSLNNNLLKYGVKG 194
A + +QK + AA L++ +K E Y ++ + L+
Sbjct: 151 LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSXYKEXENYPTCYKKCIAQVLV------ 204
Query: 195 HLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVV 254
QL + D VA + + P FSG+ + L D+ + DE+D + V
Sbjct: 205 --------QLHRADYVAAQKCVRESYSI-PGFSGSEDCAALEDLLQAYDEQDEEQLLRVC 255
Query: 255 K 255
+
Sbjct: 256 R 256
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 83 YKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMF 142
YK+ +EAI ++A+ ++ + A + + Y + + ++ I +++KA +++
Sbjct: 20 YKQGDYDEAIEYYQKALELYPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELY 73
Query: 143 QNE-EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI--ARQSLNN 185
N E + K Y +E Y K++E+Y A+Q+L N
Sbjct: 74 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGN 119
>pdb|3MXZ|A Chain A, Crystal Structure Of Tubulin Folding Cofactor A From
Arabidopsis Thaliana
Length = 116
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLES 68
AD+ DK A+ + L + + G + + + +CH +LES
Sbjct: 39 ADMKDKGADPYDLKQQENVLGESRMMIPDCHKRLES 74
>pdb|2VKJ|A Chain A, Structure Of The Soluble Domain Of The Membrane Protein
Tm1634 From Thermotoga Maritima
pdb|2VKJ|B Chain B, Structure Of The Soluble Domain Of The Membrane Protein
Tm1634 From Thermotoga Maritima
pdb|2VKO|A Chain A, Structure Of The Soluble Domain Of The Membrane Protein
Tm1634 From Thermotoga Maritima
pdb|2VKO|B Chain B, Structure Of The Soluble Domain Of The Membrane Protein
Tm1634 From Thermotoga Maritima
pdb|2VKO|C Chain C, Structure Of The Soluble Domain Of The Membrane Protein
Tm1634 From Thermotoga Maritima
pdb|2VKO|D Chain D, Structure Of The Soluble Domain Of The Membrane Protein
Tm1634 From Thermotoga Maritima
Length = 106
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
Query: 127 NIEQTIVFFEKAADMFQNEEVTTSAN----QCKQKVA 159
N + +VFFEKA ++ NEE+ A+ +C++K+A
Sbjct: 68 NYGEALVFFEKALNLSDNEEIKKIASFYLEECRKKLA 104
>pdb|2BLE|A Chain A, Structure Of Human Guanosine Monophosphate Reductase Gmpr1
In Complex With Gmp
pdb|2BWG|A Chain A, Structure Of Human Guanosine Monophosphate Reductase Gmpr1
In Complex With Gmp
pdb|2BWG|B Chain B, Structure Of Human Guanosine Monophosphate Reductase Gmpr1
In Complex With Gmp
pdb|2BWG|C Chain C, Structure Of Human Guanosine Monophosphate Reductase Gmpr1
In Complex With Gmp
pdb|2BWG|D Chain D, Structure Of Human Guanosine Monophosphate Reductase Gmpr1
In Complex With Gmp
Length = 367
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 190 YGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTRE 231
+G+KGH+++ G C C GDV A + + FSG E
Sbjct: 232 HGLKGHIISDGGCT-CPGDVAKAFGAGADFVMLGGMFSGHTE 272
>pdb|3B13|A Chain A, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|C Chain C, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 431
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 15/122 (12%)
Query: 86 TSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE 145
TS + +SC +N + D R M RY ++ +L+ N + E A + +
Sbjct: 4 TSKDNRMSCTVNLLNFYKDNNREEMYIRYLYKLRDLHLDCDN------YTEAAYTLLLHT 57
Query: 146 EVTT-SANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQL 204
+ S QC +V Q + Q H+ + +++L ++ Y KG + I L
Sbjct: 58 WLLKWSDEQCASQVMQTGQQHPQTHRQL-------KETLYETIIGYFDKGKMWEEAIS-L 109
Query: 205 CK 206
CK
Sbjct: 110 CK 111
>pdb|3TON|A Chain A, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|3TON|B Chain B, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|3TOP|A Chain A, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
pdb|3TOP|B Chain B, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
Length = 908
Score = 27.7 bits (60), Expect = 8.2, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 95 LEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADM-----FQNEEVTT 149
L +A F D R S A + +EI ELY + N E+++ F DM F N V+
Sbjct: 424 LYRAYVAFPDFFRNSTAKWWKREIEELYNNPQNPERSLKFDGMWIDMNEPSSFVNGAVSP 483
Query: 150 SANQCKQKVAQYAAELEQYHKSI 172
Y LE + +
Sbjct: 484 GCRDASLNHPPYMPHLESRDRGL 506
>pdb|3RK3|E Chain E, Truncated Snare Complex With Complexin
Length = 63
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 23 GLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHC 82
G GSK DAA F++A + + A+ KA + K+E++ EA + + +
Sbjct: 1 GPLGSKLPDAAKKFEEAQEALRQAEEERKA---------KYAKMEAEREAVRQGIRDKYG 51
Query: 83 YKKTSSNEA 91
KK EA
Sbjct: 52 IKKKEEREA 60
>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
pdb|1N1A|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
Length = 140
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Query: 20 NGWGLFGSKYEDAADLFDKAANSFKLA-----KSWDKAGATYVKLANCHL 64
GW L G+K++ + D DK SF L K+WD A AT CH+
Sbjct: 58 TGWLLDGTKFDSSLDRKDKF--SFDLGKGEVIKAWDIAIATMKVGEVCHI 105
>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52
Length = 280
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Query: 20 NGWGLFGSKYEDAADLFDKAANSFKLA-----KSWDKAGATYVKLANCHL 64
GW L G+K++ + D DK SF L K+WD A AT CH+
Sbjct: 78 TGWLLDGTKFDSSLDRKDKF--SFDLGKGEVIKAWDIAIATMKVGEVCHI 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.129 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,042,334
Number of Sequences: 62578
Number of extensions: 257800
Number of successful extensions: 999
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 981
Number of HSP's gapped (non-prelim): 27
length of query: 289
length of database: 14,973,337
effective HSP length: 98
effective length of query: 191
effective length of database: 8,840,693
effective search space: 1688572363
effective search space used: 1688572363
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)