Query 022992
Match_columns 289
No_of_seqs 178 out of 1674
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 07:39:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022992.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022992hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1586 Protein required for f 100.0 2.2E-48 4.9E-53 309.8 29.1 281 6-289 2-288 (288)
2 PF14938 SNAP: Soluble NSF att 100.0 1.1E-48 2.3E-53 337.8 27.5 274 6-279 1-282 (282)
3 KOG1585 Protein required for f 100.0 2.5E-31 5.4E-36 213.7 26.7 266 8-282 5-273 (308)
4 KOG4626 O-linked N-acetylgluco 99.8 9.4E-20 2E-24 163.8 14.2 210 27-268 266-490 (966)
5 PF14938 SNAP: Soluble NSF att 99.8 1.6E-16 3.5E-21 137.3 23.4 215 68-284 30-251 (282)
6 KOG4626 O-linked N-acetylgluco 99.8 1.1E-17 2.5E-22 150.6 14.3 221 27-279 232-467 (966)
7 KOG1840 Kinesin light chain [C 99.7 1.7E-14 3.6E-19 131.8 28.6 249 34-282 200-464 (508)
8 KOG1130 Predicted G-alpha GTPa 99.7 6.4E-16 1.4E-20 133.6 17.0 201 40-243 102-326 (639)
9 KOG1840 Kinesin light chain [C 99.7 4E-14 8.8E-19 129.3 28.6 241 5-248 215-467 (508)
10 KOG1586 Protein required for f 99.7 4E-14 8.7E-19 114.1 20.4 176 2-178 27-221 (288)
11 COG3063 PilF Tfp pilus assembl 99.6 9.9E-14 2.1E-18 111.9 18.0 142 69-227 31-173 (250)
12 KOG2003 TPR repeat-containing 99.6 2.6E-14 5.7E-19 125.1 15.5 210 21-258 497-723 (840)
13 TIGR00990 3a0801s09 mitochondr 99.6 1.5E-13 3.2E-18 131.5 21.7 217 35-278 333-552 (615)
14 KOG1130 Predicted G-alpha GTPa 99.6 4.8E-14 1E-18 122.1 16.3 189 49-240 171-363 (639)
15 TIGR00990 3a0801s09 mitochondr 99.6 3.2E-13 7E-18 129.2 23.0 210 26-258 344-573 (615)
16 KOG1126 DNA-binding cell divis 99.5 3.7E-13 8E-18 122.7 12.2 198 40-269 428-626 (638)
17 TIGR02521 type_IV_pilW type IV 99.4 3.8E-11 8.3E-16 99.3 21.6 174 27-223 25-199 (234)
18 PRK11788 tetratricopeptide rep 99.4 6.7E-11 1.5E-15 106.8 23.7 204 40-271 114-319 (389)
19 PRK11788 tetratricopeptide rep 99.4 9.8E-11 2.1E-15 105.7 24.6 197 40-256 76-274 (389)
20 KOG1155 Anaphase-promoting com 99.4 2.1E-11 4.6E-16 107.3 19.0 159 40-223 337-496 (559)
21 COG3063 PilF Tfp pilus assembl 99.4 2E-11 4.3E-16 98.7 16.8 173 27-222 29-202 (250)
22 PRK11447 cellulose synthase su 99.4 4.3E-11 9.4E-16 122.0 21.5 187 27-226 283-528 (1157)
23 TIGR02521 type_IV_pilW type IV 99.4 2.1E-10 4.5E-15 94.9 21.9 173 27-222 45-232 (234)
24 KOG1585 Protein required for f 99.4 2.5E-10 5.3E-15 93.1 20.8 181 32-216 70-250 (308)
25 PRK09782 bacteriophage N4 rece 99.4 6.5E-11 1.4E-15 117.2 21.2 175 27-227 523-711 (987)
26 PRK15174 Vi polysaccharide exp 99.4 5.5E-10 1.2E-14 107.4 26.8 181 27-226 124-351 (656)
27 PRK15174 Vi polysaccharide exp 99.4 1.9E-10 4E-15 110.6 23.6 215 26-267 89-351 (656)
28 TIGR02917 PEP_TPR_lipo putativ 99.4 1.6E-10 3.4E-15 114.1 23.7 195 7-225 21-259 (899)
29 TIGR03302 OM_YfiO outer membra 99.3 3E-10 6.4E-15 95.5 19.5 185 27-221 27-231 (235)
30 PRK09782 bacteriophage N4 rece 99.3 1.2E-10 2.5E-15 115.4 18.5 198 43-275 519-718 (987)
31 KOG1173 Anaphase-promoting com 99.3 1.3E-10 2.8E-15 104.5 15.9 180 27-225 326-521 (611)
32 PRK11447 cellulose synthase su 99.3 8E-10 1.7E-14 112.8 23.3 200 40-256 276-520 (1157)
33 PRK12370 invasion protein regu 99.3 3.3E-10 7.1E-15 107.1 18.8 152 47-222 318-470 (553)
34 TIGR02917 PEP_TPR_lipo putativ 99.3 2.3E-09 4.9E-14 105.9 24.9 98 115-225 570-667 (899)
35 KOG1126 DNA-binding cell divis 99.3 7.4E-11 1.6E-15 107.9 12.8 178 24-226 430-624 (638)
36 KOG2002 TPR-containing nuclear 99.3 4.1E-09 8.9E-14 100.2 24.7 217 3-227 250-530 (1018)
37 PRK11189 lipoprotein NlpI; Pro 99.2 6.5E-10 1.4E-14 96.9 17.9 175 31-224 62-267 (296)
38 KOG1155 Anaphase-promoting com 99.2 2.5E-09 5.5E-14 94.4 19.0 176 27-220 344-534 (559)
39 PRK12370 invasion protein regu 99.2 2.9E-09 6.3E-14 100.7 19.9 199 27-256 254-466 (553)
40 KOG0548 Molecular co-chaperone 99.1 1.3E-08 2.9E-13 91.3 21.3 228 32-280 223-472 (539)
41 PRK04841 transcriptional regul 99.1 1.1E-07 2.4E-12 95.1 29.7 223 40-263 498-767 (903)
42 TIGR03302 OM_YfiO outer membra 99.1 7.7E-09 1.7E-13 86.9 18.0 164 5-179 30-230 (235)
43 COG2956 Predicted N-acetylgluc 99.1 3.9E-08 8.4E-13 83.5 21.2 217 23-260 45-278 (389)
44 KOG2002 TPR-containing nuclear 99.1 3E-08 6.4E-13 94.5 22.5 179 27-226 178-375 (1018)
45 KOG0548 Molecular co-chaperone 99.1 3.7E-08 8E-13 88.6 21.1 220 39-275 263-509 (539)
46 KOG1941 Acetylcholine receptor 99.1 5.3E-08 1.2E-12 83.9 20.8 192 27-221 136-359 (518)
47 KOG1941 Acetylcholine receptor 99.1 8E-08 1.7E-12 82.8 21.3 207 79-287 128-350 (518)
48 PF13424 TPR_12: Tetratricopep 99.1 2.4E-09 5.3E-14 73.9 10.1 72 72-143 4-77 (78)
49 KOG1125 TPR repeat-containing 99.1 1.8E-08 4E-13 91.2 18.1 194 1-225 285-530 (579)
50 PRK04841 transcriptional regul 99.0 8.5E-07 1.8E-11 88.8 31.9 184 39-225 458-644 (903)
51 PRK15359 type III secretion sy 99.0 4.7E-09 1E-13 81.5 12.1 114 92-227 13-126 (144)
52 PRK11189 lipoprotein NlpI; Pro 99.0 4.9E-08 1.1E-12 85.1 18.8 153 47-221 40-193 (296)
53 PF13424 TPR_12: Tetratricopep 99.0 5.1E-09 1.1E-13 72.2 10.0 73 109-181 2-75 (78)
54 KOG2003 TPR repeat-containing 99.0 1.4E-08 2.9E-13 89.8 14.9 218 27-276 470-705 (840)
55 COG2956 Predicted N-acetylgluc 99.0 1.2E-07 2.6E-12 80.6 19.6 211 2-225 48-281 (389)
56 KOG1173 Anaphase-promoting com 99.0 3.7E-08 8E-13 89.0 17.3 215 40-280 319-535 (611)
57 KOG1129 TPR repeat-containing 99.0 1.5E-08 3.2E-13 86.2 13.7 196 38-260 261-458 (478)
58 PF13429 TPR_15: Tetratricopep 99.0 1.2E-08 2.6E-13 88.2 13.4 214 5-247 24-264 (280)
59 PRK10370 formate-dependent nit 99.0 6.5E-08 1.4E-12 79.2 16.9 132 87-239 54-188 (198)
60 KOG0547 Translocase of outer m 99.0 2.4E-07 5.3E-12 82.6 21.3 55 8-62 108-178 (606)
61 KOG0547 Translocase of outer m 99.0 4.7E-08 1E-12 87.1 16.5 194 15-226 326-536 (606)
62 PF13429 TPR_15: Tetratricopep 98.9 1.3E-08 2.8E-13 88.0 12.7 172 27-221 91-276 (280)
63 PRK15179 Vi polysaccharide bio 98.9 3.7E-08 8E-13 94.5 16.3 168 34-223 50-218 (694)
64 KOG1129 TPR repeat-containing 98.9 8.8E-09 1.9E-13 87.5 10.4 164 40-225 297-461 (478)
65 PRK15359 type III secretion sy 98.9 2.9E-08 6.2E-13 77.1 11.9 109 54-183 14-123 (144)
66 PRK15363 pathogenicity island 98.9 1.1E-07 2.5E-12 73.4 14.9 103 109-224 32-134 (157)
67 PRK10049 pgaA outer membrane p 98.9 1.2E-07 2.6E-12 93.0 18.0 202 44-264 248-460 (765)
68 PRK10049 pgaA outer membrane p 98.8 2.4E-06 5.3E-11 84.0 24.5 185 27-226 251-460 (765)
69 PF09976 TPR_21: Tetratricopep 98.8 1.2E-06 2.6E-11 68.0 17.7 136 29-178 8-144 (145)
70 KOG0550 Molecular chaperone (D 98.8 1.8E-07 4E-12 81.8 13.0 154 115-279 206-368 (486)
71 KOG2076 RNA polymerase III tra 98.8 2.3E-05 4.9E-10 74.8 27.7 96 151-256 413-508 (895)
72 PRK10370 formate-dependent nit 98.7 1.7E-07 3.7E-12 76.7 11.5 118 46-181 52-173 (198)
73 TIGR02552 LcrH_SycD type III s 98.7 2.6E-07 5.5E-12 70.6 10.9 103 112-227 17-119 (135)
74 cd05804 StaR_like StaR_like; a 98.7 9E-07 2E-11 78.9 16.1 168 39-224 49-217 (355)
75 KOG1125 TPR repeat-containing 98.7 9.1E-07 2E-11 80.4 15.7 192 40-257 292-521 (579)
76 CHL00033 ycf3 photosystem I as 98.7 5.5E-07 1.2E-11 71.7 12.9 109 68-179 30-140 (168)
77 PRK15179 Vi polysaccharide bio 98.7 4.1E-07 8.8E-12 87.4 13.8 157 7-181 47-217 (694)
78 PF09976 TPR_21: Tetratricopep 98.6 2E-06 4.3E-11 66.8 14.7 134 73-220 12-145 (145)
79 CHL00033 ycf3 photosystem I as 98.6 1.1E-06 2.4E-11 69.9 13.5 113 30-145 32-146 (168)
80 KOG0553 TPR repeat-containing 98.6 5.3E-07 1.2E-11 76.1 11.9 103 112-227 81-183 (304)
81 PRK02603 photosystem I assembl 98.6 2.4E-06 5.3E-11 68.3 15.2 106 65-179 27-140 (172)
82 PRK15363 pathogenicity island 98.6 1.5E-06 3.3E-11 67.3 13.3 97 74-182 37-133 (157)
83 TIGR02795 tol_pal_ybgF tol-pal 98.6 1.1E-06 2.3E-11 65.2 12.3 107 112-225 2-108 (119)
84 PLN02789 farnesyltranstransfer 98.6 6.9E-06 1.5E-10 72.1 19.1 175 25-227 32-217 (320)
85 cd00189 TPR Tetratricopeptide 98.6 5.5E-07 1.2E-11 62.7 10.1 98 114-224 2-99 (100)
86 PRK10866 outer membrane biogen 98.6 1.3E-05 2.9E-10 67.6 20.0 177 31-218 31-237 (243)
87 PRK14574 hmsH outer membrane p 98.6 1.1E-05 2.5E-10 79.0 21.7 196 34-261 36-233 (822)
88 PLN02789 farnesyltranstransfer 98.6 2.2E-05 4.7E-10 69.0 21.4 223 27-279 51-318 (320)
89 cd05804 StaR_like StaR_like; a 98.6 1.8E-05 3.9E-10 70.5 21.1 202 36-256 9-211 (355)
90 PRK02603 photosystem I assembl 98.6 7.6E-06 1.6E-10 65.4 16.2 100 106-215 29-128 (172)
91 KOG2076 RNA polymerase III tra 98.5 1.6E-05 3.4E-10 75.9 19.6 193 27-241 133-328 (895)
92 PF13414 TPR_11: TPR repeat; P 98.5 4.9E-07 1.1E-11 60.6 7.1 63 112-180 3-66 (69)
93 PLN03077 Protein ECB2; Provisi 98.5 0.00021 4.6E-09 71.4 28.5 129 115-261 557-687 (857)
94 PF12895 Apc3: Anaphase-promot 98.5 1.4E-06 3.1E-11 60.8 9.5 81 87-178 4-84 (84)
95 TIGR02552 LcrH_SycD type III s 98.5 1.4E-06 2.9E-11 66.5 10.1 98 73-182 17-115 (135)
96 KOG0543 FKBP-type peptidyl-pro 98.5 4E-06 8.7E-11 73.6 14.0 140 110-256 206-355 (397)
97 PLN03088 SGT1, suppressor of 98.5 1.1E-06 2.3E-11 78.6 10.8 86 83-180 13-98 (356)
98 PRK14574 hmsH outer membrane p 98.5 5.2E-06 1.1E-10 81.4 15.6 186 69-282 31-217 (822)
99 PLN03088 SGT1, suppressor of 98.5 2.2E-06 4.9E-11 76.5 12.1 100 115-227 5-104 (356)
100 TIGR02795 tol_pal_ybgF tol-pal 98.5 4.3E-06 9.3E-11 61.9 11.6 103 74-182 3-106 (119)
101 cd00189 TPR Tetratricopeptide 98.5 1.5E-06 3.3E-11 60.4 8.6 93 75-179 2-95 (100)
102 PF12895 Apc3: Anaphase-promot 98.4 2.7E-06 5.9E-11 59.4 9.6 83 125-219 2-84 (84)
103 KOG0553 TPR repeat-containing 98.4 9.4E-06 2E-10 68.7 14.2 103 71-185 79-182 (304)
104 KOG0543 FKBP-type peptidyl-pro 98.4 5.5E-06 1.2E-10 72.8 13.3 129 39-179 214-353 (397)
105 TIGR00540 hemY_coli hemY prote 98.4 0.00012 2.7E-09 66.8 22.8 224 13-255 82-359 (409)
106 PRK10866 outer membrane biogen 98.4 6.5E-05 1.4E-09 63.5 19.4 176 73-256 33-237 (243)
107 COG5010 TadD Flp pilus assembl 98.4 4.4E-06 9.5E-11 69.3 11.7 154 38-216 71-225 (257)
108 PF13525 YfiO: Outer membrane 98.4 5.3E-05 1.2E-09 62.2 18.3 169 34-213 7-198 (203)
109 PRK14720 transcript cleavage f 98.4 6.6E-05 1.4E-09 73.5 21.5 140 26-183 27-180 (906)
110 PF13525 YfiO: Outer membrane 98.4 9.3E-05 2E-09 60.8 19.7 154 7-171 4-197 (203)
111 PRK10747 putative protoheme IX 98.4 2.9E-05 6.3E-10 70.6 18.2 158 12-180 81-291 (398)
112 PRK10803 tol-pal system protei 98.4 7.2E-06 1.6E-10 69.9 13.2 106 113-225 143-249 (263)
113 PLN03218 maturation of RBCL 1; 98.4 0.00013 2.9E-09 73.6 24.0 95 75-179 581-676 (1060)
114 PLN03218 maturation of RBCL 1; 98.4 0.00021 4.5E-09 72.2 25.4 173 27-220 556-746 (1060)
115 PLN03081 pentatricopeptide (PP 98.4 0.00021 4.5E-09 69.8 24.5 212 27-260 273-523 (697)
116 KOG0550 Molecular chaperone (D 98.4 1.3E-05 2.8E-10 70.4 14.2 128 87-223 218-351 (486)
117 PF13414 TPR_11: TPR repeat; P 98.4 2.9E-06 6.4E-11 56.7 7.9 66 152-224 3-69 (69)
118 PLN03081 pentatricopeptide (PP 98.3 0.00011 2.3E-09 71.8 21.5 34 27-60 172-216 (697)
119 PRK10803 tol-pal system protei 98.3 6.9E-06 1.5E-10 70.0 11.3 107 33-145 143-250 (263)
120 KOG0624 dsRNA-activated protei 98.3 4.5E-05 9.8E-10 65.8 15.6 182 27-227 52-257 (504)
121 PF04190 DUF410: Protein of un 98.3 0.0003 6.5E-09 60.0 20.8 221 27-278 4-238 (260)
122 PF12688 TPR_5: Tetratrico pep 98.3 2.6E-05 5.6E-10 58.2 12.3 100 113-219 2-101 (120)
123 PF13432 TPR_16: Tetratricopep 98.3 2.6E-06 5.6E-11 56.3 5.8 60 117-182 2-61 (65)
124 PF12688 TPR_5: Tetratrico pep 98.3 4.5E-05 9.8E-10 56.9 12.7 99 75-179 3-102 (120)
125 KOG4555 TPR repeat-containing 98.2 3.4E-05 7.4E-10 57.5 11.3 108 111-227 42-149 (175)
126 KOG1174 Anaphase-promoting com 98.2 0.00023 4.9E-09 62.9 18.2 182 80-281 308-521 (564)
127 COG5010 TadD Flp pilus assembl 98.2 0.00024 5.2E-09 59.1 17.1 146 87-256 81-227 (257)
128 KOG1127 TPR repeat-containing 98.2 4E-05 8.6E-10 74.0 13.2 137 28-180 507-658 (1238)
129 KOG1156 N-terminal acetyltrans 98.2 0.00017 3.8E-09 66.8 16.9 165 33-223 8-173 (700)
130 PRK10747 putative protoheme IX 98.1 0.0011 2.4E-08 60.3 22.2 134 28-179 80-214 (398)
131 KOG1127 TPR repeat-containing 98.1 8.5E-05 1.8E-09 71.8 15.0 158 87-268 473-630 (1238)
132 KOG4555 TPR repeat-containing 98.1 9E-05 2E-09 55.3 11.8 99 73-179 43-142 (175)
133 TIGR00540 hemY_coli hemY prote 98.1 0.0035 7.6E-08 57.2 24.9 225 5-250 100-389 (409)
134 KOG3060 Uncharacterized conser 98.1 0.0026 5.7E-08 52.9 21.2 168 33-225 52-223 (289)
135 PRK15331 chaperone protein Sic 98.1 0.00045 9.8E-09 53.9 16.0 100 109-221 34-133 (165)
136 PLN03077 Protein ECB2; Provisi 98.1 0.0029 6.2E-08 63.4 25.4 95 154-257 556-651 (857)
137 KOG0624 dsRNA-activated protei 98.0 0.0013 2.8E-08 57.1 18.8 149 114-272 225-379 (504)
138 KOG3617 WD40 and TPR repeat-co 98.0 0.0011 2.5E-08 63.2 19.7 192 27-218 872-1170(1416)
139 PF12569 NARP1: NMDA receptor- 98.0 0.0026 5.6E-08 59.5 22.0 139 109-260 191-338 (517)
140 COG1729 Uncharacterized protei 98.0 0.00012 2.7E-09 61.4 11.6 104 115-225 144-247 (262)
141 KOG0495 HAT repeat protein [RN 98.0 0.0016 3.5E-08 60.8 19.4 191 43-263 594-789 (913)
142 KOG1156 N-terminal acetyltrans 98.0 0.00084 1.8E-08 62.4 17.4 161 40-218 48-210 (700)
143 KOG1128 Uncharacterized conser 97.9 0.00013 2.8E-09 68.5 12.1 117 87-222 500-616 (777)
144 KOG4162 Predicted calmodulin-b 97.9 0.00033 7.1E-09 66.2 13.8 144 29-190 646-792 (799)
145 PF12862 Apc5: Anaphase-promot 97.9 0.00033 7.1E-09 50.0 11.0 83 80-162 6-91 (94)
146 PF09986 DUF2225: Uncharacteri 97.9 0.00035 7.5E-09 57.8 12.5 94 87-180 92-193 (214)
147 PF13432 TPR_16: Tetratricopep 97.9 5.8E-05 1.3E-09 49.7 6.2 62 157-225 2-63 (65)
148 KOG2047 mRNA splicing factor [ 97.8 0.0058 1.3E-07 57.1 20.3 225 40-280 394-638 (835)
149 PF13512 TPR_18: Tetratricopep 97.8 0.00086 1.9E-08 51.2 12.4 89 112-207 10-98 (142)
150 KOG3617 WD40 and TPR repeat-co 97.8 0.00049 1.1E-08 65.6 13.3 94 86-179 872-994 (1416)
151 KOG1128 Uncharacterized conser 97.8 0.00092 2E-08 63.0 14.8 117 92-226 470-586 (777)
152 KOG4162 Predicted calmodulin-b 97.8 0.0008 1.7E-08 63.6 14.4 130 79-227 656-788 (799)
153 PRK10153 DNA-binding transcrip 97.7 0.00066 1.4E-08 63.6 13.5 139 27-182 334-483 (517)
154 PLN03098 LPA1 LOW PSII ACCUMUL 97.7 0.00014 3.1E-09 65.5 8.4 67 111-180 74-140 (453)
155 PRK14720 transcript cleavage f 97.7 0.00066 1.4E-08 66.7 13.5 134 72-221 30-177 (906)
156 PF13371 TPR_9: Tetratricopept 97.7 0.00015 3.3E-09 48.8 6.6 58 119-182 2-59 (73)
157 KOG1174 Anaphase-promoting com 97.7 0.0058 1.3E-07 54.3 17.6 153 115-286 304-456 (564)
158 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.001 2.2E-08 60.0 13.3 118 40-178 176-294 (395)
159 COG1729 Uncharacterized protei 97.7 0.00044 9.6E-09 58.1 10.3 105 75-185 144-248 (262)
160 KOG4234 TPR repeat-containing 97.7 0.00077 1.7E-08 54.1 10.9 125 9-145 73-201 (271)
161 PRK15331 chaperone protein Sic 97.7 0.00048 1.1E-08 53.8 9.4 94 75-180 40-133 (165)
162 PF12569 NARP1: NMDA receptor- 97.7 0.00039 8.4E-09 64.9 10.4 142 72-225 193-337 (517)
163 KOG3060 Uncharacterized conser 97.6 0.024 5.2E-07 47.4 19.2 167 75-265 54-222 (289)
164 KOG3616 Selective LIM binding 97.6 0.0041 8.8E-08 59.0 16.5 105 73-178 661-791 (1636)
165 PF13176 TPR_7: Tetratricopept 97.6 0.00013 2.9E-09 42.0 4.5 32 114-145 1-32 (36)
166 KOG3024 Uncharacterized conser 97.6 0.035 7.6E-07 47.0 23.7 233 24-277 17-279 (312)
167 KOG4340 Uncharacterized conser 97.6 0.018 3.9E-07 49.3 18.2 140 39-184 50-210 (459)
168 PRK10153 DNA-binding transcrip 97.5 0.0027 5.8E-08 59.6 14.1 123 87-227 357-487 (517)
169 PF14559 TPR_19: Tetratricopep 97.5 0.00018 3.8E-09 47.8 4.6 51 124-180 3-53 (68)
170 KOG2796 Uncharacterized conser 97.5 0.031 6.7E-07 47.0 18.5 170 87-270 192-363 (366)
171 COG4783 Putative Zn-dependent 97.5 0.004 8.7E-08 56.3 14.3 128 75-221 309-436 (484)
172 PF04184 ST7: ST7 protein; In 97.5 0.0054 1.2E-07 55.8 15.1 149 79-242 175-342 (539)
173 KOG3616 Selective LIM binding 97.5 0.004 8.8E-08 59.0 14.7 66 98-177 751-816 (1636)
174 PF10602 RPN7: 26S proteasome 97.5 0.025 5.5E-07 45.3 17.7 130 90-227 14-144 (177)
175 KOG1464 COP9 signalosome, subu 97.5 0.015 3.2E-07 49.2 16.5 247 25-279 76-351 (440)
176 PF00515 TPR_1: Tetratricopept 97.5 0.00026 5.6E-09 40.0 4.5 33 112-144 1-33 (34)
177 KOG4234 TPR repeat-containing 97.4 0.0034 7.3E-08 50.5 11.5 113 111-231 94-206 (271)
178 PF10300 DUF3808: Protein of u 97.4 0.0069 1.5E-07 56.2 15.5 204 46-264 201-429 (468)
179 PLN03098 LPA1 LOW PSII ACCUMUL 97.4 0.00039 8.5E-09 62.7 7.0 65 74-141 76-141 (453)
180 PF12968 DUF3856: Domain of Un 97.4 0.016 3.5E-07 42.6 13.8 110 71-180 5-128 (144)
181 PF13512 TPR_18: Tetratricopep 97.4 0.0026 5.6E-08 48.6 9.9 85 152-240 10-94 (142)
182 PF09295 ChAPs: ChAPs (Chs5p-A 97.4 0.0057 1.2E-07 55.2 13.6 110 87-218 184-293 (395)
183 KOG2376 Signal recognition par 97.4 0.019 4.1E-07 53.2 16.8 69 113-181 176-253 (652)
184 PF07719 TPR_2: Tetratricopept 97.3 0.00053 1.1E-08 38.5 4.6 33 112-144 1-33 (34)
185 PF09986 DUF2225: Uncharacteri 97.3 0.027 5.8E-07 46.6 16.3 96 48-143 92-196 (214)
186 COG0457 NrfG FOG: TPR repeat [ 97.3 0.056 1.2E-06 43.1 18.0 173 34-225 60-234 (291)
187 KOG3785 Uncharacterized conser 97.3 0.028 6E-07 49.2 16.1 181 12-225 20-217 (557)
188 PF10345 Cohesin_load: Cohesin 97.3 0.19 4.2E-06 48.4 24.6 148 68-220 54-206 (608)
189 COG4700 Uncharacterized protei 97.3 0.0078 1.7E-07 48.0 11.7 133 78-227 61-194 (251)
190 KOG4340 Uncharacterized conser 97.3 0.0031 6.8E-08 53.8 9.9 209 46-267 23-279 (459)
191 PRK11906 transcriptional regul 97.2 0.031 6.6E-07 50.8 16.5 135 87-243 273-419 (458)
192 PF11817 Foie-gras_1: Foie gra 97.2 0.0079 1.7E-07 51.0 12.4 92 87-178 153-244 (247)
193 KOG0495 HAT repeat protein [RN 97.2 0.049 1.1E-06 51.4 17.9 66 153-225 652-717 (913)
194 PF13371 TPR_9: Tetratricopept 97.2 0.0011 2.3E-08 44.6 5.7 58 81-144 3-61 (73)
195 COG4783 Putative Zn-dependent 97.2 0.018 3.9E-07 52.2 14.8 116 45-178 318-434 (484)
196 COG4105 ComL DNA uptake lipopr 97.2 0.1 2.2E-06 43.8 19.4 161 7-178 33-230 (254)
197 PF10602 RPN7: 26S proteasome 97.2 0.042 9.2E-07 44.0 15.7 126 51-179 14-140 (177)
198 PF12862 Apc5: Anaphase-promot 97.2 0.01 2.2E-07 42.2 10.5 79 45-123 10-92 (94)
199 PF04733 Coatomer_E: Coatomer 97.2 0.0087 1.9E-07 52.0 12.0 162 79-271 108-276 (290)
200 PF14559 TPR_19: Tetratricopep 97.1 0.0014 2.9E-08 43.4 5.6 56 163-225 2-57 (68)
201 COG4105 ComL DNA uptake lipopr 97.1 0.027 5.9E-07 47.2 14.1 126 153-283 35-171 (254)
202 COG2976 Uncharacterized protei 97.1 0.062 1.3E-06 43.2 15.5 104 109-223 86-189 (207)
203 PF10345 Cohesin_load: Cohesin 97.1 0.28 6.2E-06 47.3 25.6 213 5-218 30-250 (608)
204 KOG0545 Aryl-hydrocarbon recep 97.1 0.014 3.1E-07 48.4 11.9 121 110-237 176-310 (329)
205 PF03704 BTAD: Bacterial trans 97.1 0.018 4E-07 44.3 12.3 62 112-179 62-123 (146)
206 PF13181 TPR_8: Tetratricopept 97.1 0.0016 3.5E-08 36.6 4.7 32 112-143 1-32 (34)
207 PF04733 Coatomer_E: Coatomer 97.0 0.0097 2.1E-07 51.6 11.0 158 37-226 106-269 (290)
208 PF13176 TPR_7: Tetratricopept 97.0 0.002 4.3E-08 37.0 4.6 27 154-180 1-27 (36)
209 COG3071 HemY Uncharacterized e 97.0 0.21 4.5E-06 44.4 18.9 99 115-221 266-389 (400)
210 KOG3081 Vesicle coat complex C 97.0 0.19 4E-06 42.5 17.7 127 121-267 146-278 (299)
211 COG5159 RPN6 26S proteasome re 96.9 0.21 4.7E-06 42.6 23.8 138 40-178 52-191 (421)
212 PRK11906 transcriptional regul 96.9 0.03 6.5E-07 50.9 13.3 167 30-218 251-432 (458)
213 COG0457 NrfG FOG: TPR repeat [ 96.9 0.16 3.4E-06 40.4 18.3 166 40-225 102-268 (291)
214 PF12968 DUF3856: Domain of Un 96.9 0.042 9E-07 40.5 11.4 99 46-144 22-132 (144)
215 COG4235 Cytochrome c biogenesi 96.8 0.037 8E-07 47.3 12.8 102 112-226 156-260 (287)
216 COG2976 Uncharacterized protei 96.8 0.088 1.9E-06 42.3 13.9 96 76-181 92-188 (207)
217 PF13374 TPR_10: Tetratricopep 96.8 0.0035 7.6E-08 36.8 4.8 34 112-145 2-35 (42)
218 COG0790 FOG: TPR repeat, SEL1 96.8 0.29 6.4E-06 42.3 18.8 133 26-180 54-219 (292)
219 KOG2300 Uncharacterized conser 96.7 0.43 9.4E-06 43.7 19.0 120 15-136 28-151 (629)
220 PF03704 BTAD: Bacterial trans 96.7 0.081 1.8E-06 40.6 13.0 96 119-221 13-124 (146)
221 PF00515 TPR_1: Tetratricopept 96.7 0.0044 9.4E-08 34.8 4.4 30 152-181 1-30 (34)
222 KOG0551 Hsp90 co-chaperone CNS 96.7 0.024 5.3E-07 49.1 10.5 115 57-179 65-180 (390)
223 KOG2376 Signal recognition par 96.7 0.19 4.2E-06 46.8 16.7 137 77-222 84-253 (652)
224 PF13431 TPR_17: Tetratricopep 96.7 0.0016 3.5E-08 36.9 2.3 34 134-173 1-34 (34)
225 KOG1915 Cell cycle control pro 96.6 0.53 1.1E-05 43.1 22.9 248 13-275 158-478 (677)
226 COG4235 Cytochrome c biogenesi 96.6 0.041 8.9E-07 47.1 11.6 123 6-147 136-262 (287)
227 KOG2581 26S proteasome regulat 96.6 0.48 1E-05 42.4 20.1 219 44-275 137-360 (493)
228 PF07719 TPR_2: Tetratricopept 96.6 0.0061 1.3E-07 34.0 4.6 29 153-181 2-30 (34)
229 PF04184 ST7: ST7 protein; In 96.6 0.26 5.6E-06 45.3 17.0 132 31-178 170-321 (539)
230 COG4700 Uncharacterized protei 96.6 0.16 3.4E-06 40.7 13.7 124 40-179 96-220 (251)
231 PF13428 TPR_14: Tetratricopep 96.6 0.0059 1.3E-07 36.7 4.6 33 113-145 2-34 (44)
232 KOG2047 mRNA splicing factor [ 96.5 0.22 4.9E-06 47.0 16.3 186 31-221 246-453 (835)
233 PF12739 TRAPPC-Trs85: ER-Golg 96.4 0.56 1.2E-05 43.0 18.3 177 33-225 208-402 (414)
234 COG2909 MalT ATP-dependent tra 96.4 1.2 2.6E-05 43.8 25.4 210 5-221 431-646 (894)
235 KOG0551 Hsp90 co-chaperone CNS 96.3 0.072 1.6E-06 46.3 11.0 115 98-221 67-181 (390)
236 KOG4642 Chaperone-dependent E3 96.3 0.016 3.4E-07 48.0 6.7 107 28-146 5-112 (284)
237 PF05843 Suf: Suppressor of fo 96.2 0.034 7.3E-07 48.1 9.0 123 87-225 16-139 (280)
238 PF11817 Foie-gras_1: Foie gra 96.2 0.17 3.7E-06 42.9 12.8 92 47-138 152-244 (247)
239 KOG0686 COP9 signalosome, subu 96.1 0.48 1E-05 42.4 15.5 174 96-273 134-314 (466)
240 KOG1070 rRNA processing protei 96.1 1.5 3.2E-05 45.3 20.1 161 45-225 1470-1632(1710)
241 KOG4648 Uncharacterized conser 96.0 0.04 8.6E-07 48.1 8.3 98 115-225 100-197 (536)
242 KOG3081 Vesicle coat complex C 96.0 0.82 1.8E-05 38.7 16.7 141 87-259 152-297 (299)
243 PF13431 TPR_17: Tetratricopep 96.0 0.0033 7.2E-08 35.6 1.1 33 94-132 1-33 (34)
244 PF13181 TPR_8: Tetratricopept 96.0 0.026 5.5E-07 31.5 4.9 30 153-182 2-31 (34)
245 PF06552 TOM20_plant: Plant sp 96.0 0.029 6.3E-07 44.5 6.6 51 87-143 50-104 (186)
246 COG2909 MalT ATP-dependent tra 95.9 1.9 4.1E-05 42.4 20.7 182 33-218 497-684 (894)
247 KOG1550 Extracellular protein 95.9 0.34 7.3E-06 46.1 14.9 149 49-223 228-394 (552)
248 PF13174 TPR_6: Tetratricopept 95.9 0.015 3.2E-07 32.1 3.6 30 114-143 2-31 (33)
249 COG0790 FOG: TPR repeat, SEL1 95.8 0.75 1.6E-05 39.7 15.8 149 45-223 53-221 (292)
250 KOG4648 Uncharacterized conser 95.8 0.035 7.6E-07 48.4 6.8 94 39-144 103-197 (536)
251 KOG2300 Uncharacterized conser 95.7 1.7 3.7E-05 40.0 19.9 138 73-216 7-150 (629)
252 PF10300 DUF3808: Protein of u 95.7 0.26 5.7E-06 45.8 12.8 119 48-179 248-374 (468)
253 KOG3785 Uncharacterized conser 95.6 1.5 3.2E-05 38.9 19.7 227 24-263 67-352 (557)
254 PF13174 TPR_6: Tetratricopept 95.6 0.03 6.4E-07 30.8 4.1 29 153-181 1-29 (33)
255 PF13374 TPR_10: Tetratricopep 95.6 0.036 7.9E-07 32.3 4.7 30 152-181 2-31 (42)
256 KOG1538 Uncharacterized conser 95.5 0.4 8.6E-06 45.4 13.2 19 160-178 781-799 (1081)
257 KOG4642 Chaperone-dependent E3 95.5 0.08 1.7E-06 43.9 7.6 94 77-182 14-108 (284)
258 KOG1070 rRNA processing protei 95.4 1.7 3.6E-05 44.9 17.7 155 46-224 1510-1665(1710)
259 KOG1463 26S proteasome regulat 95.2 1.9 4.2E-05 37.8 24.1 237 39-278 54-331 (411)
260 PF13428 TPR_14: Tetratricopep 95.2 0.035 7.6E-07 33.2 3.7 32 153-184 2-33 (44)
261 KOG2796 Uncharacterized conser 95.2 0.7 1.5E-05 39.2 12.3 130 42-182 186-316 (366)
262 KOG1464 COP9 signalosome, subu 95.1 1.6 3.5E-05 37.2 14.3 232 27-263 24-267 (440)
263 COG4785 NlpI Lipoprotein NlpI, 95.0 0.52 1.1E-05 38.8 10.7 66 108-179 61-126 (297)
264 KOG2041 WD40 repeat protein [G 94.9 2.7 6E-05 40.4 16.6 62 37-98 751-822 (1189)
265 KOG0686 COP9 signalosome, subu 94.8 2.9 6.2E-05 37.7 16.5 194 59-268 136-341 (466)
266 KOG4507 Uncharacterized conser 94.8 0.088 1.9E-06 49.1 6.5 97 119-227 614-710 (886)
267 KOG1839 Uncharacterized protei 94.8 0.8 1.7E-05 46.7 13.6 182 34-218 933-1124(1236)
268 PF10516 SHNi-TPR: SHNi-TPR; 94.7 0.063 1.4E-06 31.1 3.7 32 113-144 2-33 (38)
269 smart00028 TPR Tetratricopepti 94.7 0.043 9.4E-07 29.0 3.0 29 114-142 3-31 (34)
270 PF11207 DUF2989: Protein of u 94.6 0.91 2E-05 36.9 11.3 60 110-172 139-198 (203)
271 KOG1915 Cell cycle control pro 94.6 3.7 8.1E-05 37.8 16.4 188 46-255 86-304 (677)
272 COG4785 NlpI Lipoprotein NlpI, 94.6 1 2.2E-05 37.1 11.5 96 31-138 63-159 (297)
273 KOG2908 26S proteasome regulat 94.6 3 6.5E-05 36.6 21.5 172 87-263 90-265 (380)
274 KOG0545 Aryl-hydrocarbon recep 94.5 0.29 6.3E-06 40.9 8.4 107 31-143 176-295 (329)
275 PF05843 Suf: Suppressor of fo 94.3 0.52 1.1E-05 40.7 10.1 127 40-181 8-136 (280)
276 KOG2581 26S proteasome regulat 94.2 4.2 9E-05 36.7 16.0 134 35-170 171-305 (493)
277 PF08626 TRAPPC9-Trs120: Trans 94.2 2 4.2E-05 44.9 15.5 147 34-180 243-473 (1185)
278 cd02681 MIT_calpain7_1 MIT: do 94.1 0.65 1.4E-05 31.5 8.1 34 111-144 5-38 (76)
279 PF04190 DUF410: Protein of un 94.0 2.6 5.7E-05 35.9 13.6 114 45-178 2-116 (260)
280 KOG1839 Uncharacterized protei 93.9 0.64 1.4E-05 47.4 10.9 149 31-179 971-1126(1236)
281 cd02680 MIT_calpain7_2 MIT: do 93.7 0.68 1.5E-05 31.3 7.6 29 120-148 14-42 (75)
282 PF06552 TOM20_plant: Plant sp 93.7 0.6 1.3E-05 37.2 8.4 93 128-226 7-113 (186)
283 KOG1497 COP9 signalosome, subu 92.9 5.9 0.00013 34.6 17.0 153 108-264 140-294 (399)
284 KOG4814 Uncharacterized conser 92.9 0.91 2E-05 43.0 9.5 96 119-221 361-456 (872)
285 PF08631 SPO22: Meiosis protei 92.7 6 0.00013 34.1 19.4 90 84-173 5-105 (278)
286 PF04781 DUF627: Protein of un 92.6 1.9 4.2E-05 31.4 9.0 93 43-141 6-107 (111)
287 KOG2471 TPR repeat-containing 92.4 0.29 6.2E-06 44.9 5.5 113 114-227 242-369 (696)
288 KOG2610 Uncharacterized conser 92.3 2.4 5.3E-05 37.3 10.8 144 24-179 113-274 (491)
289 smart00028 TPR Tetratricopepti 91.9 0.37 8.1E-06 25.1 3.9 28 153-180 2-29 (34)
290 KOG4814 Uncharacterized conser 91.8 1.6 3.4E-05 41.5 9.6 98 76-179 358-455 (872)
291 KOG0687 26S proteasome regulat 91.6 8.8 0.00019 33.7 18.9 139 50-191 81-220 (393)
292 KOG2471 TPR repeat-containing 91.5 0.33 7.2E-06 44.5 4.9 85 113-204 284-380 (696)
293 KOG4322 Anaphase-promoting com 91.3 11 0.00024 34.3 14.0 154 25-179 265-426 (482)
294 PF08631 SPO22: Meiosis protei 91.3 8.9 0.00019 33.0 15.7 108 124-231 5-122 (278)
295 PF10579 Rapsyn_N: Rapsyn N-te 91.0 3.6 7.8E-05 28.0 9.0 65 112-179 6-70 (80)
296 PF04212 MIT: MIT (microtubule 90.8 0.82 1.8E-05 30.2 5.2 33 112-144 5-37 (69)
297 PF10516 SHNi-TPR: SHNi-TPR; 90.7 0.62 1.4E-05 26.9 3.9 29 153-181 2-30 (38)
298 PF02259 FAT: FAT domain; Int 90.6 11 0.00024 33.1 14.9 72 87-164 199-304 (352)
299 PF12739 TRAPPC-Trs85: ER-Golg 90.4 11 0.00024 34.5 14.0 107 75-181 210-329 (414)
300 KOG4507 Uncharacterized conser 90.4 0.29 6.3E-06 45.8 3.5 93 78-181 611-705 (886)
301 cd02683 MIT_1 MIT: domain cont 90.0 3.8 8.3E-05 27.8 8.0 33 112-144 6-38 (77)
302 PF07721 TPR_4: Tetratricopept 89.8 0.46 1E-05 24.7 2.7 22 155-176 4-25 (26)
303 KOG1550 Extracellular protein 89.7 9.4 0.0002 36.4 13.2 116 88-221 228-356 (552)
304 cd02682 MIT_AAA_Arch MIT: doma 89.7 1.3 2.8E-05 29.9 5.3 35 110-144 4-38 (75)
305 PF07721 TPR_4: Tetratricopept 89.6 0.48 1E-05 24.7 2.6 25 113-137 2-26 (26)
306 PF13281 DUF4071: Domain of un 89.5 5.4 0.00012 35.9 10.7 142 27-180 155-333 (374)
307 COG3071 HemY Uncharacterized e 89.5 15 0.00034 32.9 15.9 118 83-218 95-212 (400)
308 cd02679 MIT_spastin MIT: domai 89.0 1.3 2.7E-05 30.4 5.0 37 109-145 5-41 (79)
309 PF10373 EST1_DNA_bind: Est1 D 88.9 0.82 1.8E-05 39.0 5.1 43 91-139 1-43 (278)
310 PRK10941 hypothetical protein; 88.6 3.2 6.9E-05 35.6 8.4 78 103-186 172-249 (269)
311 PF14853 Fis1_TPR_C: Fis1 C-te 88.5 2.6 5.6E-05 26.4 5.8 42 196-240 4-45 (53)
312 KOG1538 Uncharacterized conser 88.0 27 0.00058 33.8 14.9 58 120-179 711-774 (1081)
313 cd02678 MIT_VPS4 MIT: domain c 87.5 6.7 0.00015 26.4 8.5 33 112-144 6-38 (75)
314 KOG3824 Huntingtin interacting 87.2 0.88 1.9E-05 39.4 4.1 70 70-145 114-183 (472)
315 KOG1308 Hsp70-interacting prot 87.2 0.36 7.9E-06 42.2 1.8 87 45-143 126-213 (377)
316 smart00745 MIT Microtubule Int 86.4 7.9 0.00017 26.0 8.5 34 111-144 7-40 (77)
317 PF02259 FAT: FAT domain; Int 86.2 23 0.00049 31.1 18.3 73 106-180 140-212 (352)
318 KOG1308 Hsp70-interacting prot 86.1 0.48 1E-05 41.5 2.0 85 126-223 128-212 (377)
319 PF04053 Coatomer_WDAD: Coatom 86.0 29 0.00062 32.2 13.7 52 153-219 348-399 (443)
320 PF11207 DUF2989: Protein of u 86.0 2.2 4.7E-05 34.7 5.6 59 73-133 141-199 (203)
321 PF14853 Fis1_TPR_C: Fis1 C-te 86.0 2.6 5.7E-05 26.3 4.8 33 113-145 2-34 (53)
322 PF10952 DUF2753: Protein of u 85.8 8.4 0.00018 28.7 8.0 65 115-179 4-77 (140)
323 PF10373 EST1_DNA_bind: Est1 D 85.7 2.5 5.4E-05 36.0 6.3 43 131-179 1-43 (278)
324 KOG2908 26S proteasome regulat 85.7 25 0.00054 31.1 17.8 158 123-281 86-247 (380)
325 KOG4322 Anaphase-promoting com 85.7 10 0.00022 34.5 9.9 139 40-179 320-469 (482)
326 KOG2053 Mitochondrial inherita 85.4 9.1 0.0002 37.9 10.2 25 155-179 80-104 (932)
327 cd02677 MIT_SNX15 MIT: domain 85.0 2.8 6.1E-05 28.3 4.9 30 115-144 9-38 (75)
328 PRK10941 hypothetical protein; 84.9 15 0.00033 31.5 10.5 87 147-243 176-262 (269)
329 PRK13184 pknD serine/threonine 84.7 1.9 4.1E-05 43.5 5.6 101 43-146 485-586 (932)
330 COG5187 RPN7 26S proteasome re 84.6 26 0.00056 30.4 20.1 131 49-182 91-222 (412)
331 cd02684 MIT_2 MIT: domain cont 84.6 8.4 0.00018 26.0 7.2 31 114-144 8-38 (75)
332 cd02656 MIT MIT: domain contai 84.3 3.6 7.8E-05 27.6 5.3 32 113-144 7-38 (75)
333 COG5091 SGT1 Suppressor of G2 84.1 5.8 0.00013 33.7 7.3 94 73-166 36-133 (368)
334 KOG1914 mRNA cleavage and poly 84.0 39 0.00084 32.0 17.5 49 126-180 415-463 (656)
335 COG5187 RPN7 26S proteasome re 83.8 28 0.00061 30.2 13.7 90 90-179 93-182 (412)
336 PF15015 NYD-SP12_N: Spermatog 83.8 8 0.00017 35.2 8.4 98 75-178 179-288 (569)
337 PF10579 Rapsyn_N: Rapsyn N-te 83.4 12 0.00026 25.5 8.4 68 78-148 12-79 (80)
338 KOG2041 WD40 repeat protein [G 83.2 48 0.001 32.4 23.3 26 34-59 797-822 (1189)
339 PRK13184 pknD serine/threonine 82.8 4 8.6E-05 41.3 6.9 91 90-184 486-584 (932)
340 PF10952 DUF2753: Protein of u 82.7 13 0.00029 27.7 7.8 66 77-142 5-80 (140)
341 KOG1920 IkappaB kinase complex 82.5 34 0.00074 35.3 13.0 36 5-40 867-907 (1265)
342 cd02683 MIT_1 MIT: domain cont 82.5 5.1 0.00011 27.2 5.4 35 30-65 4-38 (77)
343 KOG3364 Membrane protein invol 82.4 13 0.00028 28.3 7.9 68 111-182 31-101 (149)
344 KOG0687 26S proteasome regulat 82.2 35 0.00076 30.1 16.8 110 34-145 105-214 (393)
345 KOG4014 Uncharacterized conser 81.6 9.4 0.0002 30.8 7.2 89 126-223 41-142 (248)
346 cd02684 MIT_2 MIT: domain cont 81.4 6.4 0.00014 26.6 5.6 37 28-65 2-38 (75)
347 COG4976 Predicted methyltransf 81.2 2.1 4.5E-05 35.6 3.6 50 124-179 7-56 (287)
348 PF04212 MIT: MIT (microtubule 81.0 7.5 0.00016 25.5 5.8 34 30-64 3-36 (69)
349 PF12854 PPR_1: PPR repeat 80.8 3.5 7.7E-05 22.9 3.5 25 153-177 8-32 (34)
350 COG5159 RPN6 26S proteasome re 80.7 37 0.00081 29.5 17.6 224 46-277 98-328 (421)
351 PF08626 TRAPPC9-Trs120: Trans 80.4 41 0.00088 35.5 13.5 52 71-122 240-292 (1185)
352 COG4649 Uncharacterized protei 79.9 29 0.00064 27.8 15.3 100 114-221 96-195 (221)
353 KOG0985 Vesicle coat protein c 79.2 82 0.0018 32.5 22.0 99 154-259 1222-1340(1666)
354 cd02680 MIT_calpain7_2 MIT: do 79.1 17 0.00037 24.6 9.1 36 29-65 3-38 (75)
355 KOG1914 mRNA cleavage and poly 78.5 62 0.0013 30.7 20.0 183 55-256 267-464 (656)
356 KOG3824 Huntingtin interacting 78.2 5.5 0.00012 34.7 5.3 61 115-182 120-180 (472)
357 PF15015 NYD-SP12_N: Spermatog 78.1 45 0.00098 30.6 11.1 114 27-146 170-296 (569)
358 TIGR03504 FimV_Cterm FimV C-te 77.8 4.5 9.7E-05 24.2 3.5 24 156-179 3-26 (44)
359 PF04053 Coatomer_WDAD: Coatom 77.5 34 0.00073 31.8 10.7 79 114-218 349-427 (443)
360 smart00745 MIT Microtubule Int 77.4 9.6 0.00021 25.5 5.6 36 29-65 5-40 (77)
361 KOG0376 Serine-threonine phosp 77.2 3.9 8.6E-05 37.5 4.5 64 157-227 9-72 (476)
362 cd02678 MIT_VPS4 MIT: domain c 77.1 10 0.00022 25.5 5.5 35 30-65 4-38 (75)
363 smart00671 SEL1 Sel1-like repe 76.6 5.2 0.00011 21.9 3.5 14 127-140 20-33 (36)
364 KOG4014 Uncharacterized conser 76.6 39 0.00084 27.4 12.4 80 54-141 49-141 (248)
365 PF04910 Tcf25: Transcriptiona 76.2 59 0.0013 29.2 13.9 106 114-225 105-225 (360)
366 COG3898 Uncharacterized membra 76.0 62 0.0014 29.4 21.1 72 27-103 134-219 (531)
367 KOG4521 Nuclear pore complex, 75.7 19 0.00041 37.0 8.8 125 40-171 927-1073(1480)
368 PF13281 DUF4071: Domain of un 74.8 65 0.0014 29.1 18.6 191 62-268 129-341 (374)
369 PF02071 NSF: Aromatic-di-Alan 74.8 1.3 2.7E-05 18.7 0.4 6 35-40 4-9 (12)
370 PF13041 PPR_2: PPR repeat fam 73.9 5.6 0.00012 24.0 3.4 29 154-182 5-33 (50)
371 PF05053 Menin: Menin; InterP 73.6 36 0.00078 32.3 9.7 93 87-181 252-347 (618)
372 PF07720 TPR_3: Tetratricopept 73.3 9.3 0.0002 21.7 3.9 24 153-176 2-25 (36)
373 KOG3783 Uncharacterized conser 72.9 86 0.0019 29.6 22.0 78 149-226 446-524 (546)
374 PF01535 PPR: PPR repeat; Int 72.6 6.2 0.00013 20.6 3.0 26 154-179 2-27 (31)
375 cd02656 MIT MIT: domain contai 72.1 16 0.00034 24.4 5.5 36 29-65 3-38 (75)
376 KOG0985 Vesicle coat protein c 71.8 1.3E+02 0.0028 31.2 13.5 26 153-178 1105-1130(1666)
377 COG3629 DnrI DNA-binding trans 71.7 23 0.00049 30.6 7.6 64 111-180 152-215 (280)
378 cd02682 MIT_AAA_Arch MIT: doma 70.7 30 0.00064 23.4 7.3 29 38-66 11-39 (75)
379 TIGR00756 PPR pentatricopeptid 70.0 9.1 0.0002 20.4 3.4 26 154-179 2-27 (35)
380 TIGR03504 FimV_Cterm FimV C-te 69.7 18 0.00039 21.6 4.7 25 116-140 3-27 (44)
381 KOG3807 Predicted membrane pro 69.3 83 0.0018 28.0 15.6 26 154-179 277-302 (556)
382 COG3947 Response regulator con 69.0 20 0.00043 31.1 6.5 61 113-179 280-340 (361)
383 KOG3364 Membrane protein invol 68.1 52 0.0011 25.2 9.8 82 151-240 31-115 (149)
384 cd02681 MIT_calpain7_1 MIT: do 67.1 36 0.00079 23.0 8.0 21 44-64 17-37 (76)
385 PF03635 Vps35: Vacuolar prote 67.0 1.4E+02 0.0031 29.8 17.0 119 28-146 587-719 (762)
386 COG3118 Thioredoxin domain-con 67.0 86 0.0019 27.3 18.4 49 82-136 144-192 (304)
387 PF10255 Paf67: RNA polymerase 66.9 12 0.00026 34.1 5.2 65 155-220 125-191 (404)
388 KOG1920 IkappaB kinase complex 66.9 1.1E+02 0.0024 31.8 12.0 106 25-141 931-1042(1265)
389 PF09670 Cas_Cas02710: CRISPR- 66.8 1E+02 0.0022 28.0 14.4 54 44-101 142-198 (379)
390 KOG2053 Mitochondrial inherita 66.2 1.5E+02 0.0033 29.9 18.2 56 43-104 53-109 (932)
391 cd02679 MIT_spastin MIT: domai 65.8 21 0.00045 24.4 5.0 37 27-64 3-39 (79)
392 cd02677 MIT_SNX15 MIT: domain 65.7 23 0.00049 23.9 5.2 34 30-64 4-37 (75)
393 PF07720 TPR_3: Tetratricopept 64.9 23 0.00051 20.0 4.4 28 114-141 3-32 (36)
394 KOG0376 Serine-threonine phosp 64.5 8.2 0.00018 35.5 3.6 89 44-144 15-104 (476)
395 PF08238 Sel1: Sel1 repeat; I 64.3 23 0.00049 19.6 4.5 28 113-140 2-36 (39)
396 PF14561 TPR_20: Tetratricopep 63.4 48 0.001 23.1 7.4 61 113-177 23-83 (90)
397 COG4976 Predicted methyltransf 62.6 11 0.00023 31.6 3.6 53 87-145 10-62 (287)
398 PF13812 PPR_3: Pentatricopept 62.2 22 0.00048 18.8 4.0 26 154-179 3-28 (34)
399 KOG1463 26S proteasome regulat 61.5 1.2E+02 0.0026 27.1 14.5 134 42-175 137-272 (411)
400 PF09613 HrpB1_HrpK: Bacterial 60.4 81 0.0018 24.7 10.6 89 109-210 7-95 (160)
401 KOG2610 Uncharacterized conser 60.1 1.3E+02 0.0028 27.0 12.8 97 114-219 177-273 (491)
402 COG3898 Uncharacterized membra 60.1 1.4E+02 0.003 27.3 18.8 130 85-228 133-264 (531)
403 KOG0276 Vesicle coat complex C 60.0 90 0.0019 30.1 9.4 18 3-20 507-524 (794)
404 PF09205 DUF1955: Domain of un 59.6 78 0.0017 24.3 7.4 30 152-181 120-149 (161)
405 KOG1497 COP9 signalosome, subu 59.2 1.3E+02 0.0028 26.7 20.4 108 149-258 100-208 (399)
406 smart00101 14_3_3 14-3-3 homol 56.1 1.2E+02 0.0026 25.7 8.9 52 128-179 144-198 (244)
407 cd09240 BRO1_Alix Protein-inte 56.0 1.5E+02 0.0032 26.5 10.1 18 49-66 144-161 (346)
408 KOG2114 Vacuolar assembly/sort 55.6 2.3E+02 0.005 28.5 12.7 46 134-179 349-395 (933)
409 PF00244 14-3-3: 14-3-3 protei 55.5 87 0.0019 26.2 8.1 54 89-142 143-199 (236)
410 PF05053 Menin: Menin; InterP 53.4 2.1E+02 0.0046 27.4 12.0 111 50-161 254-367 (618)
411 smart00101 14_3_3 14-3-3 homol 53.3 1.4E+02 0.003 25.3 9.6 24 39-62 7-30 (244)
412 KOG2114 Vacuolar assembly/sort 52.9 2E+02 0.0043 28.9 10.7 51 93-143 348-399 (933)
413 PF07079 DUF1347: Protein of u 52.8 2E+02 0.0043 26.9 16.6 61 110-178 461-521 (549)
414 PF00244 14-3-3: 14-3-3 protei 52.5 1.4E+02 0.003 25.0 18.7 26 38-63 6-31 (236)
415 KOG1938 Protein with predicted 48.0 1.5E+02 0.0032 30.2 9.3 53 108-160 312-364 (960)
416 KOG0890 Protein kinase of the 47.8 4.6E+02 0.01 29.9 13.3 99 114-221 1631-1730(2382)
417 COG5091 SGT1 Suppressor of G2 46.8 87 0.0019 26.9 6.5 62 126-187 53-114 (368)
418 KOG3783 Uncharacterized conser 45.7 2.7E+02 0.0059 26.4 14.7 76 104-179 441-518 (546)
419 KOG1938 Protein with predicted 45.6 3.5E+02 0.0076 27.7 12.2 62 78-140 321-383 (960)
420 TIGR02561 HrpB1_HrpK type III 45.4 1.4E+02 0.0031 23.1 9.7 63 110-179 8-71 (153)
421 PF14561 TPR_20: Tetratricopep 44.8 1E+02 0.0023 21.4 10.0 53 194-246 23-75 (90)
422 KOG2709 Uncharacterized conser 44.7 34 0.00073 31.2 4.1 34 111-144 21-54 (560)
423 KOG0739 AAA+-type ATPase [Post 44.5 98 0.0021 27.3 6.6 40 1-45 1-42 (439)
424 cd09241 BRO1_ScRim20-like Prot 44.5 2.1E+02 0.0045 25.7 9.2 19 48-66 130-148 (355)
425 PF10255 Paf67: RNA polymerase 44.2 57 0.0012 29.8 5.6 65 114-179 124-191 (404)
426 COG3118 Thioredoxin domain-con 43.4 2.3E+02 0.0049 24.8 11.2 50 123-178 145-194 (304)
427 COG1516 FliS Flagellin-specifi 42.4 1.4E+02 0.003 22.6 6.4 38 29-67 28-65 (132)
428 PF04353 Rsd_AlgQ: Regulator o 41.7 1.4E+02 0.003 23.3 6.6 86 30-124 51-138 (153)
429 PHA02537 M terminase endonucle 41.7 2.1E+02 0.0046 24.0 10.3 39 110-148 167-214 (230)
430 COG3947 Response regulator con 41.1 1.7E+02 0.0037 25.6 7.5 60 78-143 284-344 (361)
431 KOG0276 Vesicle coat complex C 40.5 2.6E+02 0.0056 27.2 9.2 22 198-219 671-692 (794)
432 PF04910 Tcf25: Transcriptiona 39.9 2.8E+02 0.0061 24.9 15.3 101 113-219 41-165 (360)
433 COG3160 Rsd Regulator of sigma 39.2 1.7E+02 0.0038 22.3 8.3 89 27-124 48-138 (162)
434 KOG0739 AAA+-type ATPase [Post 38.7 62 0.0013 28.4 4.6 17 126-142 24-40 (439)
435 PRK11718 anti-RNA polymerase s 38.6 1.9E+02 0.0042 22.7 7.3 86 30-124 51-138 (161)
436 COG2912 Uncharacterized conser 37.9 1.6E+02 0.0034 25.3 6.9 74 106-185 175-248 (269)
437 PF04781 DUF627: Protein of un 37.6 1.6E+02 0.0035 21.5 10.1 94 82-178 6-104 (111)
438 PF02064 MAS20: MAS20 protein 36.9 51 0.0011 24.6 3.4 30 115-144 66-95 (121)
439 TIGR02710 CRISPR-associated pr 36.5 3.3E+02 0.0072 24.8 12.0 54 42-96 139-195 (380)
440 PHA02537 M terminase endonucle 35.1 2.7E+02 0.0059 23.3 10.0 114 122-237 93-222 (230)
441 COG2178 Predicted RNA-binding 35.1 2.5E+02 0.0054 22.9 8.7 64 115-178 32-95 (204)
442 PF08969 USP8_dimer: USP8 dime 34.6 1.3E+02 0.0029 21.8 5.4 35 110-144 36-70 (115)
443 PF09670 Cas_Cas02710: CRISPR- 34.3 3.5E+02 0.0077 24.4 15.7 63 75-141 134-198 (379)
444 PF12309 KBP_C: KIF-1 binding 34.0 3.6E+02 0.0078 24.4 14.9 133 48-180 139-337 (371)
445 PF12753 Nro1: Nuclear pore co 33.3 97 0.0021 28.1 5.1 34 109-144 354-387 (404)
446 PF09613 HrpB1_HrpK: Bacterial 32.8 2.4E+02 0.0053 22.1 7.8 67 153-226 11-77 (160)
447 PF10938 YfdX: YfdX protein; 28.6 2.8E+02 0.0061 21.5 6.8 30 5-39 72-101 (155)
448 KOG4563 Cell cycle-regulated h 28.4 2.8E+02 0.006 25.1 7.0 65 109-173 38-104 (400)
449 COG4455 ImpE Protein of avirul 28.1 3.7E+02 0.0079 22.7 8.5 27 153-179 36-62 (273)
450 PF03097 BRO1: BRO1-like domai 27.9 2.5E+02 0.0054 25.1 7.1 148 29-178 104-265 (377)
451 PRK05685 fliS flagellar protei 27.3 2.7E+02 0.0058 20.9 6.7 37 29-66 32-68 (132)
452 smart00386 HAT HAT (Half-A-TPR 26.8 98 0.0021 15.7 3.7 18 126-143 1-18 (33)
453 KOG2561 Adaptor protein NUB1, 26.3 5.4E+02 0.012 24.0 8.6 129 111-239 162-314 (568)
454 PF09797 NatB_MDM20: N-acetylt 25.5 4.9E+02 0.011 23.2 9.1 27 152-178 217-243 (365)
455 PF02184 HAT: HAT (Half-A-TPR) 25.2 90 0.002 17.2 2.3 19 208-226 2-20 (32)
456 PF06301 Lambda_Kil: Bacteriop 25.2 72 0.0016 18.9 2.0 29 239-268 13-41 (43)
457 PF04097 Nic96: Nup93/Nic96; 24.7 6.6E+02 0.014 24.5 11.0 34 27-60 408-441 (613)
458 PF04097 Nic96: Nup93/Nic96; 24.5 6.6E+02 0.014 24.4 12.7 26 153-178 504-531 (613)
459 PF15297 CKAP2_C: Cytoskeleton 24.4 4.8E+02 0.01 23.4 7.8 52 87-141 118-169 (353)
460 COG3629 DnrI DNA-binding trans 23.7 4.8E+02 0.011 22.6 11.1 63 74-142 154-217 (280)
461 PF11846 DUF3366: Domain of un 22.8 3.9E+02 0.0085 21.2 9.0 32 112-143 144-175 (193)
462 COG4259 Uncharacterized protei 22.4 1.4E+02 0.0031 21.5 3.4 34 113-146 73-106 (121)
463 PF08424 NRDE-2: NRDE-2, neces 21.6 5.5E+02 0.012 22.5 12.6 121 49-181 47-183 (321)
464 cd07645 I-BAR_IMD_BAIAP2L1 Inv 21.6 4.8E+02 0.01 21.7 7.3 61 27-96 30-92 (226)
465 cd09247 BRO1_Alix_like_2 Prote 21.5 5.8E+02 0.013 22.7 8.8 17 4-20 135-151 (346)
466 PF05470 eIF-3c_N: Eukaryotic 21.1 7.8E+02 0.017 24.0 14.0 59 163-221 467-528 (595)
467 TIGR00208 fliS flagellar biosy 21.1 3.5E+02 0.0077 20.0 6.5 37 29-66 28-64 (124)
468 KOG0546 HSP90 co-chaperone CPR 20.8 1.9E+02 0.0041 26.0 4.6 99 39-143 228-340 (372)
469 cd09239 BRO1_HD-PTP_like Prote 20.6 6.3E+02 0.014 22.7 10.1 17 49-65 139-155 (361)
470 KOG1310 WD40 repeat protein [G 20.5 3.4E+02 0.0073 26.0 6.3 59 114-178 410-471 (758)
471 KOG0546 HSP90 co-chaperone CPR 20.4 1.3E+02 0.0028 26.9 3.6 110 109-225 219-341 (372)
472 COG5290 IkappaB kinase complex 20.2 8.2E+02 0.018 24.9 8.9 73 27-99 878-962 (1243)
473 TIGR00985 3a0801s04tom mitocho 20.2 1.6E+02 0.0034 22.8 3.6 30 115-144 93-123 (148)
474 PF02561 FliS: Flagellar prote 20.1 3.6E+02 0.0078 19.7 8.1 37 29-66 26-62 (122)
No 1
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-48 Score=309.79 Aligned_cols=281 Identities=54% Similarity=0.937 Sum_probs=268.8
Q ss_pred hhHHHHHHHHHHhhcc---CCCCC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022992 6 ARAEEFEKKAEKKLNG---WGLFG--SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAA 80 (289)
Q Consensus 6 ~~a~~~~~~A~~~~k~---~~~~~--~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a 80 (289)
.+|..++++|||.+++ +++|+ +.|++|+++|.+|++.|+..++|+.|..+|.++++++.+.|+.+.++.+|..++
T Consensus 2 ~~a~~l~k~AEkK~~~s~gF~lfgg~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~ 81 (288)
T KOG1586|consen 2 SDAVQLMKKAEKKLNGSGGFLLFGGSNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAA 81 (288)
T ss_pred ccHHHHHHHHHHhcccCCcccccCCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 4789999999999994 34565 789999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhccCccchHHHHHHHHH
Q 022992 81 HCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE-HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVA 159 (289)
Q Consensus 81 ~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~-g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~ 159 (289)
.||++.++.+|+.|+++|++||.+.|++..+|+....||.+|+.. .++++||.+|++|.+.|....+..+++.|+.+.+
T Consensus 82 ~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA 161 (288)
T KOG1586|consen 82 NCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVA 161 (288)
T ss_pred HHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999975 8999999999999999999988899999999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHH
Q 022992 160 QYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIA 239 (289)
Q Consensus 160 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~ 239 (289)
.+-..+++|.+|+.+|+++....+++++.+|+++++++++|+||++..|...+..+++++.+++|.|.+++|+.++..|+
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~ 241 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLL 241 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHH
Confidence 99999999999999999999989999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcccCHHHHHHHHHhccccCCCchhHHHHHHHHHHhccccccccCCCC
Q 022992 240 ASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKELEEDDLT 289 (289)
Q Consensus 240 ~a~~~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (289)
.++..+|.+.|.+.++.|+++++||.|.+++|.||++++...+ |||+
T Consensus 242 ~aieE~d~e~fte~vkefDsisrLD~W~ttiLlkiK~siq~~e---dDL~ 288 (288)
T KOG1586|consen 242 DAIEEQDIEKFTEVVKEFDSISRLDQWKTTILLKIKKSIQGDE---DDLR 288 (288)
T ss_pred HHHhhhhHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhccc---cccC
Confidence 9999999999999999999999999999999999999998754 3664
No 2
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=100.00 E-value=1.1e-48 Score=337.81 Aligned_cols=274 Identities=48% Similarity=0.823 Sum_probs=247.9
Q ss_pred hhHHHHHHHHHHhhccC----CCCC---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022992 6 ARAEEFEKKAEKKLNGW----GLFG---SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVD 78 (289)
Q Consensus 6 ~~a~~~~~~A~~~~k~~----~~~~---~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~ 78 (289)
++|++++++|+|++|++ ++|+ |||++|+++|.+||++|+..|+|++|+++|.++++++.+++++..++.+|.+
T Consensus 1 ~~a~~l~~~Aek~lk~~~~~~~~f~~~~~~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~ 80 (282)
T PF14938_consen 1 QEAEELIKEAEKKLKKSSGFFSFFGSKKPDYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEE 80 (282)
T ss_dssp -HHHHHHHHHHHHCS---TCCCHH--SCHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccccchhhhcCCCCCCHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 47999999999999942 2333 6999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhccCccchHHHHHHH
Q 022992 79 AAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE-HNIEQTIVFFEKAADMFQNEEVTTSANQCKQK 157 (289)
Q Consensus 79 ~a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~-g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~ 157 (289)
++.+|++.++++|+++|++|+++|...|++..+++++.++|.+|... |++++|+++|++|+++|+..+.+.....++.+
T Consensus 81 Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~ 160 (282)
T PF14938_consen 81 AANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLK 160 (282)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHH
Q 022992 158 VAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSD 237 (289)
Q Consensus 158 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~ 237 (289)
+|.++..+|+|++|+++|++++...+..+..+++++.+++++++|++..||+..|.+.|+++..++|+|.+++|+.++..
T Consensus 161 ~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~ 240 (282)
T PF14938_consen 161 AADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLED 240 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHH
Confidence 99999999999999999999987767777778888889999999999999999999999999999999999999999999
Q ss_pred HHHHHcccCHHHHHHHHHhccccCCCchhHHHHHHHHHHhcc
Q 022992 238 IAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLK 279 (289)
Q Consensus 238 l~~a~~~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~~~ 279 (289)
|+.++..+|.+.|++++..|+.+++||||.+++|.+|+++|.
T Consensus 241 l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~l~~~k~~~~ 282 (282)
T PF14938_consen 241 LLEAYEEGDVEAFTEAVAEYDSISRLDNWKTKMLLKIKKKIE 282 (282)
T ss_dssp HHHHHHTT-CCCHHHHCHHHTTSS---HHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHcccCccHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999873
No 3
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-31 Score=213.74 Aligned_cols=266 Identities=19% Similarity=0.267 Sum_probs=234.0
Q ss_pred HHHHHHHHHHhhc-cCCCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC
Q 022992 8 AEEFEKKAEKKLN-GWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT 86 (289)
Q Consensus 8 a~~~~~~A~~~~k-~~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~ 86 (289)
|...+.+|.++.+ ....|+|||+.|+..|.+|+.+|+..++|++|..+.++|.+.++...++..+|.+|+.++.+.++.
T Consensus 5 aakki~ea~e~~a~t~~~wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~ 84 (308)
T KOG1585|consen 5 AAKKISEADEMTALTLTRWKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKEL 84 (308)
T ss_pred HHHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 4455566666665 445699999999999999999999999999999999999999999999999999999999999988
Q ss_pred -CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHh
Q 022992 87 -SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL 165 (289)
Q Consensus 87 -~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (289)
.+.+++.+|++|+.+|..+|.++.++.++.+.|.+++. -+++.|+.+|++++.+++..+..+.+.+.+..++.+++++
T Consensus 85 ~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~len-v~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl 163 (308)
T KOG1585|consen 85 SKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALEN-VKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL 163 (308)
T ss_pred HHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh
Confidence 99999999999999999999999999999999999998 8999999999999999999998898999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHhhccccccc-hhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcc
Q 022992 166 EQYHKSIEIYEEIARQSLNNNLLKYG-VKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDE 244 (289)
Q Consensus 166 g~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~ 244 (289)
.+|++|...+.+-......-. .++ ....+..+.++|+...|+..|.++++...+ .|.|..+.++..+.+|+.++..
T Consensus 164 ~kf~Eaa~a~lKe~~~~~~~~--~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~q-ip~f~~sed~r~lenLL~ayd~ 240 (308)
T KOG1585|consen 164 EKFTEAATAFLKEGVAADKCD--AYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQ-IPAFLKSEDSRSLENLLTAYDE 240 (308)
T ss_pred HHhhHHHHHHHHhhhHHHHHh--hcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhc-CccccChHHHHHHHHHHHHhcc
Confidence 999999998877642211110 111 223355667889999999999999998544 6889899999999999999999
Q ss_pred cCHHHHHHHHHhccccCCCchhHHHHHHHHHHhccccc
Q 022992 245 EDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKE 282 (289)
Q Consensus 245 ~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 282 (289)
||.+.+...+.. +.++.+| ++..++.+.|++|+
T Consensus 241 gD~E~~~kvl~s-p~~r~MD----neya~l~kdl~~P~ 273 (308)
T KOG1585|consen 241 GDIEEIKKVLSS-PTVRNMD----NEYAHLNKDLSNPN 273 (308)
T ss_pred CCHHHHHHHHcC-hHhhhhh----HHHHHHhhccCCCC
Confidence 999999999998 9999998 88999998888775
No 4
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.83 E-value=9.4e-20 Score=163.82 Aligned_cols=210 Identities=21% Similarity=0.303 Sum_probs=160.7
Q ss_pred CCHHHHHHHHHHHHH--------------HHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHH
Q 022992 27 SKYEDAADLFDKAAN--------------SFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA 91 (289)
Q Consensus 27 ~~~~~A~~~~~~A~~--------------~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A 91 (289)
..++.|+.+|.+|+. +|..+|..+-|+++|.+|+++..+. -.+|.++|++.... +..+|
T Consensus 266 ~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F------~~Ay~NlanALkd~G~V~ea 339 (966)
T KOG4626|consen 266 RIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNF------PDAYNNLANALKDKGSVTEA 339 (966)
T ss_pred hcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCc------hHHHhHHHHHHHhccchHHH
Confidence 566777777777743 3667777777777777777775443 23778888888776 89999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHH
Q 022992 92 ISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS 171 (289)
Q Consensus 92 ~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 171 (289)
+.||.+|+.+.+.. +.++.++|.++.++|..++|+.+|.+|+++++.. +...++||.+|..+|++++|
T Consensus 340 ~~cYnkaL~l~p~h------adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~------aaa~nNLa~i~kqqgnl~~A 407 (966)
T KOG4626|consen 340 VDCYNKALRLCPNH------ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEF------AAAHNNLASIYKQQGNLDDA 407 (966)
T ss_pred HHHHHHHHHhCCcc------HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhh------hhhhhhHHHHHHhcccHHHH
Confidence 99999999887644 4489999999999999999999999999998764 35789999999999999999
Q ss_pred HHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccCHHHHH
Q 022992 172 IEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFT 251 (289)
Q Consensus 172 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d~~~~~ 251 (289)
+.+|++++.+. ...+..+.++|.++-.+||...|..++.++..+.|.|. ....+|+..+. |...+.
T Consensus 408 i~~YkealrI~-------P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~A-----eAhsNLasi~k--DsGni~ 473 (966)
T KOG4626|consen 408 IMCYKEALRIK-------PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFA-----EAHSNLASIYK--DSGNIP 473 (966)
T ss_pred HHHHHHHHhcC-------chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHH-----HHHhhHHHHhh--ccCCcH
Confidence 99999997442 13456788899999999999999999999999888875 33566666664 344555
Q ss_pred HHHHhccccCCCchhHH
Q 022992 252 DVVKEFDSMTPLDPWKT 268 (289)
Q Consensus 252 ~al~~~~~~~~~d~~~~ 268 (289)
+|+..|+..-.++|-+.
T Consensus 474 ~AI~sY~~aLklkPDfp 490 (966)
T KOG4626|consen 474 EAIQSYRTALKLKPDFP 490 (966)
T ss_pred HHHHHHHHHHccCCCCc
Confidence 56666665555554443
No 5
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.77 E-value=1.6e-16 Score=137.30 Aligned_cols=215 Identities=21% Similarity=0.282 Sum_probs=160.8
Q ss_pred CHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q 022992 68 SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE 146 (289)
Q Consensus 68 ~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~ 146 (289)
++..++..|..+|++|+.. ++++|.++|.+|.+++.+.+++..++.++.+.+.++.. +++++|+.+|++|+++|...|
T Consensus 30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G 108 (282)
T PF14938_consen 30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYREAG 108 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcC
Confidence 3445556666666666555 77888888888888888899999999999999999998 599999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992 147 VTTSANQCKQKVAQYAAEL-EQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT 225 (289)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~ 225 (289)
++..++.++.++|.+|... |++++|+++|++++....... ........+.+++.++...|++.+|...|++.......
T Consensus 109 ~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 109 RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp -HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 9999999999999999998 999999999999986544443 23445566778888999999999999999987653322
Q ss_pred CC--C-chHHHHHHHHHHHHcccCHHHHHHHHHhccccCC-C-chhHHHHHHHHHHhccccccc
Q 022992 226 FS--G-TREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTP-L-DPWKTTLLLRVKEKLKAKELE 284 (289)
Q Consensus 226 ~~--~-~~e~~~l~~l~~a~~~~d~~~~~~al~~~~~~~~-~-d~~~~~~~~~~~~~~~~~~~~ 284 (289)
.+ . +-...++..++..+..||+...++++.+|....+ + ++-.-.++..|-+++..+-.+
T Consensus 188 ~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e 251 (282)
T PF14938_consen 188 NNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVE 251 (282)
T ss_dssp HCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CC
T ss_pred ccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHH
Confidence 11 1 1112456666666678999999999999887742 3 344446777777777665443
No 6
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.76 E-value=1.1e-17 Score=150.57 Aligned_cols=221 Identities=15% Similarity=0.202 Sum_probs=175.6
Q ss_pred CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHH
Q 022992 27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA 91 (289)
Q Consensus 27 ~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A 91 (289)
|+.-.|+..|++| |++|+..+.|+.|+.+|++|+..... -|.++-++|.+|.+. .++-|
T Consensus 232 Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn------~A~a~gNla~iYyeqG~ldlA 305 (966)
T KOG4626|consen 232 GEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN------HAVAHGNLACIYYEQGLLDLA 305 (966)
T ss_pred chHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc------chhhccceEEEEeccccHHHH
Confidence 7878888888877 67888888888888888888876432 266777888888665 88999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHH
Q 022992 92 ISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS 171 (289)
Q Consensus 92 ~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 171 (289)
|++|++|+++-+.--+ ++.++|..+...|+..+|..+|.+|+.+.+. -++++++||.++.++|.+++|
T Consensus 306 I~~Ykral~~~P~F~~------Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~------hadam~NLgni~~E~~~~e~A 373 (966)
T KOG4626|consen 306 IDTYKRALELQPNFPD------AYNNLANALKDKGSVTEAVDCYNKALRLCPN------HADAMNNLGNIYREQGKIEEA 373 (966)
T ss_pred HHHHHHHHhcCCCchH------HHhHHHHHHHhccchHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHhccchHH
Confidence 9999999988765544 8999999999999999999999999998664 346899999999999999999
Q ss_pred HHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccCHHHHH
Q 022992 172 IEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFT 251 (289)
Q Consensus 172 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d~~~~~ 251 (289)
..+|..+++... .....+.+++.++..+|.+.+|..+|++++.+.|.|. ..+.+++..+.. .....
T Consensus 374 ~~ly~~al~v~p-------~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fA-----da~~NmGnt~ke--~g~v~ 439 (966)
T KOG4626|consen 374 TRLYLKALEVFP-------EFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFA-----DALSNMGNTYKE--MGDVS 439 (966)
T ss_pred HHHHHHHHhhCh-------hhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHH-----HHHHhcchHHHH--hhhHH
Confidence 999999985431 2345678899999999999999999999999999986 346677776641 23455
Q ss_pred HHHHhccccCCCchhHHHHHHHHHHhcc
Q 022992 252 DVVKEFDSMTPLDPWKTTLLLRVKEKLK 279 (289)
Q Consensus 252 ~al~~~~~~~~~d~~~~~~~~~~~~~~~ 279 (289)
.|++.|.....+.|.+..-...++-..+
T Consensus 440 ~A~q~y~rAI~~nPt~AeAhsNLasi~k 467 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPTFAEAHSNLASIYK 467 (966)
T ss_pred HHHHHHHHHHhcCcHHHHHHhhHHHHhh
Confidence 6677777666677777766666554443
No 7
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.72 E-value=1.7e-14 Score=131.75 Aligned_cols=249 Identities=13% Similarity=0.118 Sum_probs=198.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc--CCH
Q 022992 34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLK-LE-SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI--GRL 108 (289)
Q Consensus 34 ~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~-~~-~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~--g~~ 108 (289)
..+...+..|..+|+|++|...+..|+++..+ .| +....+..+..+|.+|+.. .+.+|+..|++|+.++... .+.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 33445899999999999999999999999653 33 3445566777799999888 9999999999999999865 577
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc--CccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcc
Q 022992 109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE--EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNN 186 (289)
Q Consensus 109 ~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 186 (289)
...+.++.+||..|...|++++|..++++|++|++.. .+....+..+.+++.++..++++++|+.+|++++.+....+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 8899999999999999999999999999999999873 23455667899999999999999999999999986554322
Q ss_pred ccc-cchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC---CchHHHHHHHHHHHHcccC-----HHHHHHHHHhc
Q 022992 187 LLK-YGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS---GTREYRLLSDIAASMDEED-----IAKFTDVVKEF 257 (289)
Q Consensus 187 ~~~-~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~---~~~e~~~l~~l~~a~~~~d-----~~~~~~al~~~ 257 (289)
... ..+...+.++|.+++.+|.+.+|.+.|+.++.+.+... +...+..+.+|+.++.... ...|.++...+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 35677888999999999999999999999988776544 3455788889998884222 46788888877
Q ss_pred cccCCCchhHHHHHHHHHHhccccc
Q 022992 258 DSMTPLDPWKTTLLLRVKEKLKAKE 282 (289)
Q Consensus 258 ~~~~~~d~~~~~~~~~~~~~~~~~~ 282 (289)
...++-.|.-+..+..+...++.-|
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g 464 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQG 464 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcc
Confidence 6666666666666666665554433
No 8
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.71 E-value=6.4e-16 Score=133.63 Aligned_cols=201 Identities=13% Similarity=0.163 Sum_probs=169.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-------C--------------HHHHHHHHHHH
Q 022992 40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-------S--------------SNEAISCLEQA 98 (289)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-------~--------------~~~A~~~~~~A 98 (289)
|+.++..|.|++|+.|..+-+++.+++|+....++++.++|++|-.. . ++.|+++|+.-
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN 181 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN 181 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence 46688899999999999999999999999999999999999999432 1 35688888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 022992 99 VNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI 178 (289)
Q Consensus 99 ~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 178 (289)
+++..+.|+....++++-++|..|.-+|+++.||.+.+.=++|.++.|+......++.+||.+++-+|+++.|+++|...
T Consensus 182 L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t 261 (639)
T KOG1130|consen 182 LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT 261 (639)
T ss_pred HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999998888889999999999999999999999988
Q ss_pred H--HHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-CchHHHHHHHHHHHHc
Q 022992 179 A--RQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS-GTREYRLLSDIAASMD 243 (289)
Q Consensus 179 ~--~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~-~~~e~~~l~~l~~a~~ 243 (289)
+ .+.+++.. -.+...+.+|..|....++..|+..+.+-+.|...+. +.+|.+..-.|+.++.
T Consensus 262 l~LAielg~r~---vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~ 326 (639)
T KOG1130|consen 262 LNLAIELGNRT---VEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFN 326 (639)
T ss_pred HHHHHHhcchh---HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 5 44444422 1222346678888878899999999999887766654 5677777778888773
No 9
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.70 E-value=4e-14 Score=129.27 Aligned_cols=241 Identities=16% Similarity=0.163 Sum_probs=186.5
Q ss_pred HhhHHHHHHHHHHhhc-cCCCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHH
Q 022992 5 IARAEEFEKKAEKKLN-GWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKL-E-SKHEAAQAYVDAAH 81 (289)
Q Consensus 5 ~~~a~~~~~~A~~~~k-~~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~-~-~~~~aa~~~~~~a~ 81 (289)
.++|+.+.+.|=..+. +++ -+...-..+....|.+|...+.+++|+..|++|+.+.... | +....+..+.++|.
T Consensus 215 ~e~A~~l~k~Al~~l~k~~G---~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ 291 (508)
T KOG1840|consen 215 LEKAEPLCKQALRILEKTSG---LKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAV 291 (508)
T ss_pred HHHHHHHHHHHHHHHHHccC---ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 5678888888877764 433 2222223344468899999999999999999999999843 3 45677889999999
Q ss_pred HHccC-CHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-Cccc-hHHHHHH
Q 022992 82 CYKKT-SSNEAISCLEQAVNMFCDI--GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE-EVTT-SANQCKQ 156 (289)
Q Consensus 82 ~~~~~-~~~~A~~~~~~A~~~~~~~--g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~-~~~~-~~~~~~~ 156 (289)
+|-.. ++.+|..|+++|++|+.+. -+....+..+.+++.++...+++++|+.+|+++++++... |... ..+.++.
T Consensus 292 ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~ 371 (508)
T KOG1840|consen 292 LYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYA 371 (508)
T ss_pred HHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHH
Confidence 99666 9999999999999999873 4567889999999999999999999999999999998843 3333 6788999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhc-cccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-Cc-hHHH
Q 022992 157 KVAQYAAELEQYHKSIEIYEEIARQSLNN-NLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS-GT-REYR 233 (289)
Q Consensus 157 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~-~~-~e~~ 233 (289)
++|.+|..+|+|++|.++|++++.+.... ....+.....+.+++..+...+.+..|...|.++..+...++ .+ .--.
T Consensus 372 nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~ 451 (508)
T KOG1840|consen 372 NLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTY 451 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHH
Confidence 99999999999999999999998554222 112344455566778778888888889999999877665555 22 2234
Q ss_pred HHHHHHHHHc-ccCHH
Q 022992 234 LLSDIAASMD-EEDIA 248 (289)
Q Consensus 234 ~l~~l~~a~~-~~d~~ 248 (289)
...+|+.+|. .|+.+
T Consensus 452 ~~~nL~~~Y~~~g~~e 467 (508)
T KOG1840|consen 452 TYLNLAALYRAQGNYE 467 (508)
T ss_pred HHHHHHHHHHHcccHH
Confidence 5677777774 66653
No 10
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=4e-14 Score=114.08 Aligned_cols=176 Identities=18% Similarity=0.194 Sum_probs=146.6
Q ss_pred cchHhhHHHHHHHHHHhhc---cCC-----C-------CC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 022992 2 GDQIARAEEFEKKAEKKLN---GWG-----L-------FG-SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLK 65 (289)
Q Consensus 2 ~~~~~~a~~~~~~A~~~~k---~~~-----~-------~~-~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~ 65 (289)
|++++||.+|+.+|.+++| .|. | .+ ++=+.|+..|..|+++|++. ++.+|++|.++++++|..
T Consensus 27 ~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~ 105 (288)
T KOG1586|consen 27 SNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTD 105 (288)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHh
Confidence 4579999999999999998 342 1 12 55567888888889999876 999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 022992 66 LESKHEAAQAYVDAAHCYKKT--SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ 143 (289)
Q Consensus 66 ~~~~~~aa~~~~~~a~~~~~~--~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~ 143 (289)
.|+..-+|..+..+|.+|... ++++||.+|++|.+.|........+.+|+.+.+.+-..+++|.+||..|++....--
T Consensus 106 ~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 106 MGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred hhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999765 999999999999999999888899999999999999999999999999999887543
Q ss_pred ccC-ccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 022992 144 NEE-VTTSANQCKQKVAQYAAELEQYHKSIEIYEEI 178 (289)
Q Consensus 144 ~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 178 (289)
.+. -..++...+...|.++.-..+.-.+...+++-
T Consensus 186 ~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky 221 (288)
T KOG1586|consen 186 DNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKY 221 (288)
T ss_pred cchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHH
Confidence 332 12556678889999988766655544444443
No 11
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.61 E-value=9.9e-14 Score=111.90 Aligned_cols=142 Identities=19% Similarity=0.199 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCc
Q 022992 69 KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV 147 (289)
Q Consensus 69 ~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~ 147 (289)
...++.+...+|.-|.+. ++..|..-+++|+++.+..- .++..+|.+|+.+|+.+.|-+.|++|+.+.+..|
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~------~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G- 103 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY------LAHLVRAHYYQKLGENDLADESYRKALSLAPNNG- 103 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH------HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc-
Confidence 344455555555555444 55555555555555544322 2555555555555555555555555555555444
Q ss_pred cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992 148 TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS 227 (289)
Q Consensus 148 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~ 227 (289)
+++++.|.+++.+|+|++|...|++++.... -+.....+-|+|+|.+.+|+.+.|...|.++++.+|.++
T Consensus 104 -----dVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~-----Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~ 173 (250)
T COG3063 104 -----DVLNNYGAFLCAQGRPEEAMQQFERALADPA-----YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP 173 (250)
T ss_pred -----chhhhhhHHHHhCCChHHHHHHHHHHHhCCC-----CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC
Confidence 3455555555555555555555555542110 011122344555555555555555555555555555554
No 12
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.61 E-value=2.6e-14 Score=125.11 Aligned_cols=210 Identities=21% Similarity=0.300 Sum_probs=162.6
Q ss_pred cCCCCC-CCHHHHHHHHHHHH--------------HHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcc
Q 022992 21 GWGLFG-SKYEDAADLFDKAA--------------NSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK 85 (289)
Q Consensus 21 ~~~~~~-~~~~~A~~~~~~A~--------------~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~ 85 (289)
|...|- ||+++|+++|..|. ..+...|+.++|++||.+...+..+. +..+.+++.+|..
T Consensus 497 gn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn------~evl~qianiye~ 570 (840)
T KOG2003|consen 497 GNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN------AEVLVQIANIYEL 570 (840)
T ss_pred CceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHH
Confidence 554554 99999999999984 34678999999999999998887643 7789999999988
Q ss_pred C-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHH
Q 022992 86 T-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAE 164 (289)
Q Consensus 86 ~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 164 (289)
. ++..|++++.++..+.+..- .+|.++|.+|.+.|+..+|..++-.+...|+.+ .++..+||..|..
T Consensus 571 led~aqaie~~~q~~slip~dp------~ilskl~dlydqegdksqafq~~ydsyryfp~n------ie~iewl~ayyid 638 (840)
T KOG2003|consen 571 LEDPAQAIELLMQANSLIPNDP------AILSKLADLYDQEGDKSQAFQCHYDSYRYFPCN------IETIEWLAAYYID 638 (840)
T ss_pred hhCHHHHHHHHHHhcccCCCCH------HHHHHHHHHhhcccchhhhhhhhhhcccccCcc------hHHHHHHHHHHHh
Confidence 8 99999999999998876433 489999999999999999999998888887753 3678899999999
Q ss_pred hcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHH-HHHHHHHHHHc
Q 022992 165 LEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREY-RLLSDIAASMD 243 (289)
Q Consensus 165 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~-~~l~~l~~a~~ 243 (289)
..-+++|+.+|+++. .++++++++ .+.+..|..+.|++.+| |+-|..+++.|+..-++ .++..+..-+.
T Consensus 639 tqf~ekai~y~ekaa--liqp~~~kw-----qlmiasc~rrsgnyqka---~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 639 TQFSEKAINYFEKAA--LIQPNQSKW-----QLMIASCFRRSGNYQKA---FDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred hHHHHHHHHHHHHHH--hcCccHHHH-----HHHHHHHHHhcccHHHH---HHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 999999999999996 233333333 34567888899999766 55556777888877776 44444443333
Q ss_pred ccCHHHHHHHHHhcc
Q 022992 244 EEDIAKFTDVVKEFD 258 (289)
Q Consensus 244 ~~d~~~~~~al~~~~ 258 (289)
..|...+.+-+++..
T Consensus 709 l~d~key~~klek~e 723 (840)
T KOG2003|consen 709 LKDAKEYADKLEKAE 723 (840)
T ss_pred chhHHHHHHHHHHHH
Confidence 444555555555533
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.60 E-value=1.5e-13 Score=131.51 Aligned_cols=217 Identities=11% Similarity=0.040 Sum_probs=159.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 022992 35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAAR 113 (289)
Q Consensus 35 ~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~ 113 (289)
.+...|.++...|++++|+..|.+++++... -..++..+|.++... ++++|+.+|++++++.+.. ..
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~ 400 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIELDPR------VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSED------PD 400 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HH
Confidence 3445567788899999999999999988542 245778889988776 9999999999999885433 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchh
Q 022992 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK 193 (289)
Q Consensus 114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 193 (289)
++..+|.++...|++++|+.+|++++++.+.. ...+.++|.++..+|++++|+..|++++.... ...
T Consensus 401 ~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P-------~~~ 467 (615)
T TIGR00990 401 IYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF------IFSHIQLGVTQYKEGSIASSMATFRRCKKNFP-------EAP 467 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-------CCh
Confidence 89999999999999999999999999987643 24678999999999999999999999975432 123
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchH--HHHHHHHHHHHcccCHHHHHHHHHhccccCCCchhHHHHH
Q 022992 194 GHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTRE--YRLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLL 271 (289)
Q Consensus 194 ~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e--~~~l~~l~~a~~~~d~~~~~~al~~~~~~~~~d~~~~~~~ 271 (289)
..+...|.++...|++++|...|++++++.|....... ..++...+..+. ....+.+|...+.....++|.+...+
T Consensus 468 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~--~~~~~~eA~~~~~kAl~l~p~~~~a~ 545 (615)
T TIGR00990 468 DVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQ--WKQDFIEAENLCEKALIIDPECDIAV 545 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 45677889999999999999999999998887542211 111222222222 12345555555555555666665555
Q ss_pred HHHHHhc
Q 022992 272 LRVKEKL 278 (289)
Q Consensus 272 ~~~~~~~ 278 (289)
..+...+
T Consensus 546 ~~la~~~ 552 (615)
T TIGR00990 546 ATMAQLL 552 (615)
T ss_pred HHHHHHH
Confidence 5555443
No 14
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.60 E-value=4.8e-14 Score=122.12 Aligned_cols=189 Identities=14% Similarity=0.088 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC
Q 022992 49 WDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHN 127 (289)
Q Consensus 49 ~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~ 127 (289)
++.|+++|+.-+++.+++|+....+++|-++|+.|.-. +++.||.+.+.-+.+.+.-|+.....++..++|.+|.-+|+
T Consensus 171 l~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~ 250 (639)
T KOG1130|consen 171 LENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN 250 (639)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc
Confidence 46778888888889999999999999999999999877 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HHhhccccccchhhHHHHHHHHHHc
Q 022992 128 IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR--QSLNNNLLKYGVKGHLLNAGICQLC 205 (289)
Q Consensus 128 ~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~l~ 205 (289)
++.|+++|.+++.+..+.|+....++....||..|..+.++++||.++++.+. ..+.+ ..+....+..+|..+-.
T Consensus 251 fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~D---riGe~RacwSLgna~~a 327 (639)
T KOG1130|consen 251 FELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELED---RIGELRACWSLGNAFNA 327 (639)
T ss_pred cHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHh
Confidence 99999999999999999999988999999999999999999999999999863 34444 33445566778888888
Q ss_pred cCCHHHHHHHHHHHhhcCCCCC-CchHHHHHHHHHH
Q 022992 206 KGDVVAITNALERYQDMDPTFS-GTREYRLLSDIAA 240 (289)
Q Consensus 206 ~gd~~~A~~~~~~~~~~~~~~~-~~~e~~~l~~l~~ 240 (289)
.|...+|....+..+++..... .++|-....+|.+
T Consensus 328 lg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsd 363 (639)
T KOG1130|consen 328 LGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSD 363 (639)
T ss_pred hhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHH
Confidence 9998888777766655433333 3444443444443
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.59 E-value=3.2e-13 Score=129.16 Aligned_cols=210 Identities=14% Similarity=0.099 Sum_probs=156.7
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHH
Q 022992 26 GSKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNE 90 (289)
Q Consensus 26 ~~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~ 90 (289)
.|++++|...|.++ +.++...|++++|+.+|.+++++... + ..++..+|.++... ++++
T Consensus 344 ~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~--~----~~~~~~lg~~~~~~g~~~~ 417 (615)
T TIGR00990 344 KGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE--D----PDIYYHRAQLHFIKGEFAQ 417 (615)
T ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHH
Confidence 39999999999988 45677899999999999999887322 1 45788889999777 9999
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHH
Q 022992 91 AISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHK 170 (289)
Q Consensus 91 A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 170 (289)
|+.+|++++++.+... ..+.++|.++..+|++++|+..|++++..++.. ..++..+|.++..+|++++
T Consensus 418 A~~~~~kal~l~P~~~------~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~------~~~~~~lg~~~~~~g~~~~ 485 (615)
T TIGR00990 418 AGKDYQKSIDLDPDFI------FSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA------PDVYNYYGELLLDQNKFDE 485 (615)
T ss_pred HHHHHHHHHHcCccCH------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHccCHHH
Confidence 9999999999876433 468899999999999999999999999987653 3578999999999999999
Q ss_pred HHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-cccCHH-
Q 022992 171 SIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASM-DEEDIA- 248 (289)
Q Consensus 171 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~-~~~d~~- 248 (289)
|++.|++++................+..++.++...|++.+|...+++++.++|... .....++..+ ..|+.+
T Consensus 486 A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~-----~a~~~la~~~~~~g~~~e 560 (615)
T TIGR00990 486 AIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECD-----IAVATMAQLLLQQGDVDE 560 (615)
T ss_pred HHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHHHccCHHH
Confidence 999999998554322111111112222333444456999999999999998876542 2345566655 366643
Q ss_pred ---HHHHHHHhcc
Q 022992 249 ---KFTDVVKEFD 258 (289)
Q Consensus 249 ---~~~~al~~~~ 258 (289)
.++++++..+
T Consensus 561 Ai~~~e~A~~l~~ 573 (615)
T TIGR00990 561 ALKLFERAAELAR 573 (615)
T ss_pred HHHHHHHHHHHhc
Confidence 3444444433
No 16
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=3.7e-13 Score=122.72 Aligned_cols=198 Identities=17% Similarity=0.228 Sum_probs=151.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022992 40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI 118 (289)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~l 118 (289)
|+||-.+++.+.|+.||.+|+.+-... +=+|..+|.=+... ++++|..||++|+.+.++.-+ +|..+
T Consensus 428 GNcfSLQkdh~~Aik~f~RAiQldp~f------aYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYn------AwYGl 495 (638)
T KOG1126|consen 428 GNCFSLQKDHDTAIKCFKRAIQLDPRF------AYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYN------AWYGL 495 (638)
T ss_pred cchhhhhhHHHHHHHHHHHhhccCCcc------chhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhH------HHHhh
Confidence 677888888899999999988774322 33555566544444 889999999999888877766 99999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHH
Q 022992 119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLN 198 (289)
Q Consensus 119 a~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 198 (289)
|.+|.++++++.|.-+|++|+++-+..- .++.-+|.++.++|+.++|+.+|++|+.....++. ..++
T Consensus 496 G~vy~Kqek~e~Ae~~fqkA~~INP~ns------vi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l-------~~~~ 562 (638)
T KOG1126|consen 496 GTVYLKQEKLEFAEFHFQKAVEINPSNS------VILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL-------CKYH 562 (638)
T ss_pred hhheeccchhhHHHHHHHhhhcCCccch------hHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch-------hHHH
Confidence 9999999999999999999999976542 46788999999999999999999999855433322 1244
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccCHHHHHHHHHhccccCCCchhHHH
Q 022992 199 AGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTT 269 (289)
Q Consensus 199 ~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d~~~~~~al~~~~~~~~~d~~~~~ 269 (289)
-+.+....+++++|...+++..++.|+ |......++..+. ......-|+..|.-...+||-=.+
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~-----es~v~~llgki~k--~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQ-----ESSVFALLGKIYK--RLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcc-----hHHHHHHHHHHHH--HHccchHHHHhhHHHhcCCCccch
Confidence 566777889999999999998777665 3444555566554 134455678888888888887766
No 17
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.45 E-value=3.8e-11 Score=99.35 Aligned_cols=174 Identities=16% Similarity=0.131 Sum_probs=140.2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc
Q 022992 27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI 105 (289)
Q Consensus 27 ~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~ 105 (289)
++.......+...+.++...|++++|...+.+++..... ....+..+|.++... ++++|++++++++...+..
T Consensus 25 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 98 (234)
T TIGR02521 25 TDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD------DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN 98 (234)
T ss_pred ccCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 455666778888899999999999999999999876422 245777788888776 9999999999999986543
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhc
Q 022992 106 GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (289)
Q Consensus 106 g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 185 (289)
. ..+.++|.++...|++++|+.+|++++.... .......+..+|.++...|++++|...|.+++.....
T Consensus 99 ~------~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~- 167 (234)
T TIGR02521 99 G------DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL----YPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ- 167 (234)
T ss_pred H------HHHHHHHHHHHHcccHHHHHHHHHHHHhccc----cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-
Confidence 3 4788999999999999999999999997422 1223356788999999999999999999999754221
Q ss_pred cccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcC
Q 022992 186 NLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMD 223 (289)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~ 223 (289)
....+..++.++...|++++|...++++....
T Consensus 168 ------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 199 (234)
T TIGR02521 168 ------RPESLLELAELYYLRGQYKDARAYLERYQQTY 199 (234)
T ss_pred ------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 12345677888999999999999999998763
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.43 E-value=6.7e-11 Score=106.77 Aligned_cols=204 Identities=18% Similarity=0.147 Sum_probs=125.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022992 40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI 118 (289)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~l 118 (289)
+.+|...|++++|..+|.++.+.. + ....++..++.++... ++++|++++++++...+.... ...+..+..+
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~-----~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~l 186 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEG-----D-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLR-VEIAHFYCEL 186 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCC-----c-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcch-HHHHHHHHHH
Confidence 334455566666666665555431 1 1233455566666554 777777777776655432221 2345567788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHH
Q 022992 119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLN 198 (289)
Q Consensus 119 a~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 198 (289)
|.++...|++++|+.+|+++++..+.. ..++..+|.++...|++++|++.|+++..... ......+..
T Consensus 187 a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~~ 254 (389)
T PRK11788 187 AQQALARGDLDAARALLKKALAADPQC------VRASILLGDLALAQGDYAAAIEALERVEEQDP------EYLSEVLPK 254 (389)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhHCcCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh------hhHHHHHHH
Confidence 888888899999999999988875432 24677888899999999999999988864321 112233456
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-cccCHHHHHHHHHhccccCCCchhHHHHH
Q 022992 199 AGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASM-DEEDIAKFTDVVKEFDSMTPLDPWKTTLL 271 (289)
Q Consensus 199 ~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~-~~~d~~~~~~al~~~~~~~~~d~~~~~~~ 271 (289)
++.++...|+++.|...++++.+..|.. .....++..+ ..|+.+. |+..+......+|......
T Consensus 255 l~~~~~~~g~~~~A~~~l~~~~~~~p~~------~~~~~la~~~~~~g~~~~---A~~~l~~~l~~~P~~~~~~ 319 (389)
T PRK11788 255 LMECYQALGDEAEGLEFLRRALEEYPGA------DLLLALAQLLEEQEGPEA---AQALLREQLRRHPSLRGFH 319 (389)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHhCCHHH---HHHHHHHHHHhCcCHHHHH
Confidence 6777888899999999998887765542 1223445544 3555544 3343333333345555444
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.43 E-value=9.8e-11 Score=105.71 Aligned_cols=197 Identities=17% Similarity=0.157 Sum_probs=120.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022992 40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI 118 (289)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~l 118 (289)
+.++...|++++|...+.++...- ..........+..+|.+|... ++++|+.+|.++++..+ ....++..+
T Consensus 76 a~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~------~~~~~~~~l 147 (389)
T PRK11788 76 GNLFRRRGEVDRAIRIHQNLLSRP--DLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGD------FAEGALQQL 147 (389)
T ss_pred HHHHHHcCcHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCc------chHHHHHHH
Confidence 777777788888877777666521 111222345667777777655 77788888777765421 123466777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHH
Q 022992 119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLN 198 (289)
Q Consensus 119 a~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 198 (289)
+.++...|++++|++.|++++...+..... .....+..+|.++...|++++|+.+|++++..... ....+..
T Consensus 148 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~ 219 (389)
T PRK11788 148 LEIYQQEKDWQKAIDVAERLEKLGGDSLRV-EIAHFYCELAQQALARGDLDAARALLKKALAADPQ-------CVRASIL 219 (389)
T ss_pred HHHHHHhchHHHHHHHHHHHHHhcCCcchH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC-------CHHHHHH
Confidence 777777788888888888777776554322 23345667777777778888888887777643211 1223455
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHc-ccCHHHHHHHHHh
Q 022992 199 AGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMD-EEDIAKFTDVVKE 256 (289)
Q Consensus 199 ~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~-~~d~~~~~~al~~ 256 (289)
++.++...|++.+|...|+++....|... ......++.++. .|+.+.....++.
T Consensus 220 la~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 220 LGDLALAQGDYAAAIEALERVEEQDPEYL----SEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHChhhH----HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66777777777778777777766544321 122344555543 5555444444444
No 20
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=2.1e-11 Score=107.26 Aligned_cols=159 Identities=17% Similarity=0.207 Sum_probs=133.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022992 40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI 118 (289)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~l 118 (289)
|+.|...++.++|+.+|.+|+.+-++. ..++.-+|.=|.+. +...|+++|++|+++.+..-. +|..+
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkLNp~~------~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR------AWYGL 404 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKLNPKY------LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR------AWYGL 404 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhcCcch------hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH------HHhhh
Confidence 345667788899999999999885432 55777889999877 999999999999999887654 99999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHH
Q 022992 119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLN 198 (289)
Q Consensus 119 a~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 198 (289)
|+.|.-++-+.=|+-+|++|..+-+.+. ..+.-+|.+|.++++.++|+++|.+++.- ++ .....+..
T Consensus 405 GQaYeim~Mh~YaLyYfqkA~~~kPnDs------Rlw~aLG~CY~kl~~~~eAiKCykrai~~--~d-----te~~~l~~ 471 (559)
T KOG1155|consen 405 GQAYEIMKMHFYALYYFQKALELKPNDS------RLWVALGECYEKLNRLEEAIKCYKRAILL--GD-----TEGSALVR 471 (559)
T ss_pred hHHHHHhcchHHHHHHHHHHHhcCCCch------HHHHHHHHHHHHhccHHHHHHHHHHHHhc--cc-----cchHHHHH
Confidence 9999999999999999999999865432 57889999999999999999999999722 21 12356788
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhcC
Q 022992 199 AGICQLCKGDVVAITNALERYQDMD 223 (289)
Q Consensus 199 ~~~~~l~~gd~~~A~~~~~~~~~~~ 223 (289)
+|..|-..+|..+|..+|+++++..
T Consensus 472 LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9999999999999999999997743
No 21
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.42 E-value=2e-11 Score=98.71 Aligned_cols=173 Identities=17% Similarity=0.140 Sum_probs=146.7
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc
Q 022992 27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI 105 (289)
Q Consensus 27 ~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~ 105 (289)
.+-.+|.+..-+.|.-|...|++..|..-+++|++.-++. ..++.-++.+|... +.+.|-+.|++|+.+-+++
T Consensus 29 ~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~------~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~ 102 (250)
T COG3063 29 TDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSY------YLAHLVRAHYYQKLGENDLADESYRKALSLAPNN 102 (250)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc
Confidence 4667899999999999999999999999999999985432 45777788899777 9999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhc
Q 022992 106 GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (289)
Q Consensus 106 g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 185 (289)
|+ +++|.|..+..+|+|++|..+|++|++- +.-+ ..+.++.++|.|..+.|+++.|.++|++++......
T Consensus 103 Gd------VLNNYG~FLC~qg~~~eA~q~F~~Al~~-P~Y~---~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~ 172 (250)
T COG3063 103 GD------VLNNYGAFLCAQGRPEEAMQQFERALAD-PAYG---EPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF 172 (250)
T ss_pred cc------hhhhhhHHHHhCCChHHHHHHHHHHHhC-CCCC---CcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC
Confidence 98 9999999999999999999999999874 3333 345789999999999999999999999998654333
Q ss_pred cccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhc
Q 022992 186 NLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDM 222 (289)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~ 222 (289)
+ .........+...||+..|+-.++++..-
T Consensus 173 ~-------~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~ 202 (250)
T COG3063 173 P-------PALLELARLHYKAGDYAPARLYLERYQQR 202 (250)
T ss_pred C-------hHHHHHHHHHHhcccchHHHHHHHHHHhc
Confidence 2 12345566788899999999999998763
No 22
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.39 E-value=4.3e-11 Score=122.00 Aligned_cols=187 Identities=9% Similarity=0.030 Sum_probs=139.7
Q ss_pred CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHH--------HHHHHHHHHHHHc
Q 022992 27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHE--------AAQAYVDAAHCYK 84 (289)
Q Consensus 27 ~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~--------aa~~~~~~a~~~~ 84 (289)
+++++|...|.++ |.+|...|++++|+.+|.++++.......... ........|.++.
T Consensus 283 g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~ 362 (1157)
T PRK11447 283 GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAAL 362 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHH
Confidence 8999999999988 56788899999999999999988654332110 0112234466665
Q ss_pred cC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccc-hH-----------
Q 022992 85 KT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT-SA----------- 151 (289)
Q Consensus 85 ~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~-~~----------- 151 (289)
.. ++++|+.+|++++.+.+.. +.++..+|.++...|++++|+.+|++++++.+...... ..
T Consensus 363 ~~g~~~eA~~~~~~Al~~~P~~------~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~ 436 (1157)
T PRK11447 363 KANNLAQAERLYQQARQVDNTD------SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEK 436 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHH
Confidence 55 9999999999999986532 34788899999999999999999999998866532110 00
Q ss_pred ------------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccC
Q 022992 152 ------------------------NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKG 207 (289)
Q Consensus 152 ------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 207 (289)
...+..+|.++...|++++|++.|++++...+.+ ...++.++.++...|
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~-------~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGS-------VWLTYRLAQDLRQAG 509 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcC
Confidence 1223456777888999999999999998543222 234567888999999
Q ss_pred CHHHHHHHHHHHhhcCCCC
Q 022992 208 DVVAITNALERYQDMDPTF 226 (289)
Q Consensus 208 d~~~A~~~~~~~~~~~~~~ 226 (289)
++.+|...+++++...|..
T Consensus 510 ~~~~A~~~l~~al~~~P~~ 528 (1157)
T PRK11447 510 QRSQADALMRRLAQQKPND 528 (1157)
T ss_pred CHHHHHHHHHHHHHcCCCC
Confidence 9999999999988877654
No 23
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.39 E-value=2.1e-10 Score=94.92 Aligned_cols=173 Identities=15% Similarity=0.108 Sum_probs=133.9
Q ss_pred CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHH
Q 022992 27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA 91 (289)
Q Consensus 27 ~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A 91 (289)
+++++|.+.+.++ +.++...|++++|...|.++++..... ...+.++|.++... ++++|
T Consensus 45 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~~~~~~~~~g~~~~A 118 (234)
T TIGR02521 45 GDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN------GDVLNNYGTFLCQQGKYEQA 118 (234)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcccHHHH
Confidence 6777777777765 567888999999999999999875432 24677788888766 99999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHH
Q 022992 92 ISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS 171 (289)
Q Consensus 92 ~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 171 (289)
+.++++++.... .......+.++|.++...|++++|+.+|.+++...+.. ...+..+|.++...|++++|
T Consensus 119 ~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 119 MQQFEQAIEDPL----YPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR------PESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHHHHHHhccc----cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC------hHHHHHHHHHHHHcCCHHHH
Confidence 999999987422 22345578889999999999999999999999886542 24678999999999999999
Q ss_pred HHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhc
Q 022992 172 IEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDM 222 (289)
Q Consensus 172 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~ 222 (289)
+.+++++.... + .....+...+.++...|+...|....+.....
T Consensus 189 ~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTY---N----QTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhC---C----CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999997541 1 11223344567777889999998887766543
No 24
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=2.5e-10 Score=93.05 Aligned_cols=181 Identities=18% Similarity=0.168 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCHHHH
Q 022992 32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMA 111 (289)
Q Consensus 32 A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~ 111 (289)
|+..|++|+-+.+....|.++.++|++|..+|.+.|.+..++-++..+|.+....+|++|+..|++++.++...++...+
T Consensus 70 AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma 149 (308)
T KOG1585|consen 70 AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMA 149 (308)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHH
Confidence 33444444556667788899999999999999999999999999999999999889999999999999999999998999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccc
Q 022992 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG 191 (289)
Q Consensus 112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 191 (289)
-..+.+.+.++.....+++|...+.+-..+.............+.....+|....+|..|.++|+...... ......
T Consensus 150 ~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip---~f~~se 226 (308)
T KOG1585|consen 150 FELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP---AFLKSE 226 (308)
T ss_pred HHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc---cccChH
Confidence 99999999999999999999999988877766554444433334444455666679999999998864221 111111
Q ss_pred hhhHHHHHHHHHHccCCHHHHHHHH
Q 022992 192 VKGHLLNAGICQLCKGDVVAITNAL 216 (289)
Q Consensus 192 ~~~~~~~~~~~~l~~gd~~~A~~~~ 216 (289)
....+-++ +.-...||.+...+.+
T Consensus 227 d~r~lenL-L~ayd~gD~E~~~kvl 250 (308)
T KOG1585|consen 227 DSRSLENL-LTAYDEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHH-HHHhccCCHHHHHHHH
Confidence 11122232 2334578887766554
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.38 E-value=6.5e-11 Score=117.24 Aligned_cols=175 Identities=14% Similarity=0.065 Sum_probs=132.8
Q ss_pred CCHHHHHHHHHHHH-------------HHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcc-CCHHHHH
Q 022992 27 SKYEDAADLFDKAA-------------NSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK-TSSNEAI 92 (289)
Q Consensus 27 ~~~~~A~~~~~~A~-------------~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~-~~~~~A~ 92 (289)
|++++|+..|.++. .++...|++++|..+|.+++...... ...+..++..... .++++|+
T Consensus 523 Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~------~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 523 EDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGD------NALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred CCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHhCCCHHHHH
Confidence 67777777776553 34556777777777777777652111 1122223333322 4999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHH
Q 022992 93 SCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSI 172 (289)
Q Consensus 93 ~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 172 (289)
.+|++|+.+.+. +..+.++|.++...|++++|+.+|++++.+.+... .++.++|.++...|++++|+
T Consensus 597 ~~~~~AL~l~P~-------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~------~a~~nLG~aL~~~G~~eeAi 663 (987)
T PRK09782 597 NDLTRSLNIAPS-------ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNS------NYQAALGYALWDSGDIAQSR 663 (987)
T ss_pred HHHHHHHHhCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHCCCHHHHH
Confidence 999999988662 35789999999999999999999999999876542 57899999999999999999
Q ss_pred HHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992 173 EIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS 227 (289)
Q Consensus 173 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~ 227 (289)
..|++++...+. ....+.++|.++...|+++.|...|++++++.|...
T Consensus 664 ~~l~~AL~l~P~-------~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a 711 (987)
T PRK09782 664 EMLERAHKGLPD-------DPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQA 711 (987)
T ss_pred HHHHHHHHhCCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCc
Confidence 999999854322 234678899999999999999999999999888764
No 26
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.37 E-value=5.5e-10 Score=107.41 Aligned_cols=181 Identities=14% Similarity=0.042 Sum_probs=123.7
Q ss_pred CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHH-------------HHhcCCHHHHHHHHHH-
Q 022992 27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANC-------------HLKLESKHEAAQAYVD- 78 (289)
Q Consensus 27 ~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~-------------~~~~~~~~~aa~~~~~- 78 (289)
|++++|+..|.++ +.++...|++++|...+.++... +...|+...+...+..
T Consensus 124 g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARAL 203 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6777777777666 34566677777777776655432 1223343333332222
Q ss_pred --------------HHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHH----HHHHHHHHH
Q 022992 79 --------------AAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQ----TIVFFEKAA 139 (289)
Q Consensus 79 --------------~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~----A~~~y~~A~ 139 (289)
++.++... ++++|+..+++++...+. -+.++..+|.++...|++++ |+.+|++++
T Consensus 204 l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~------~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 204 LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD------GAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 23344333 677777777777765432 24577788999998899885 799999999
Q ss_pred HHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHH
Q 022992 140 DMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY 219 (289)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~ 219 (289)
++.+.. ..++..+|.++...|++++|+..+++++..... ....+..++.++...|++++|...|++.
T Consensus 278 ~l~P~~------~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-------~~~a~~~La~~l~~~G~~~eA~~~l~~a 344 (656)
T PRK15174 278 QFNSDN------VRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-------LPYVRAMYARALRQVGQYTAASDEFVQL 344 (656)
T ss_pred hhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 886542 357888999999999999999999998754322 1234556788888899999999999988
Q ss_pred hhcCCCC
Q 022992 220 QDMDPTF 226 (289)
Q Consensus 220 ~~~~~~~ 226 (289)
....|..
T Consensus 345 l~~~P~~ 351 (656)
T PRK15174 345 AREKGVT 351 (656)
T ss_pred HHhCccc
Confidence 8776653
No 27
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.37 E-value=1.9e-10 Score=110.64 Aligned_cols=215 Identities=10% Similarity=0.002 Sum_probs=141.1
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHH
Q 022992 26 GSKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNE 90 (289)
Q Consensus 26 ~~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~ 90 (289)
.|++++|...|.++ +.++...|++++|+..|.+++.+.... ...+..++.++... ++++
T Consensus 89 ~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~------~~a~~~la~~l~~~g~~~e 162 (656)
T PRK15174 89 SSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGN------SQIFALHLRTLVLMDKELQ 162 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCChHH
Confidence 48889999888887 567888999999999999998863211 22334444444443 5555
Q ss_pred HHHHHHHHHHH-------------HHhcCCHHHHHH---------------HHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 022992 91 AISCLEQAVNM-------------FCDIGRLSMAAR---------------YYKEIAELYESEHNIEQTIVFFEKAADMF 142 (289)
Q Consensus 91 A~~~~~~A~~~-------------~~~~g~~~~~a~---------------~l~~la~~~~~~g~~~~A~~~y~~A~~~~ 142 (289)
|+..+++++.. +...|+...+.. ....++.++...|++++|+..|++++++.
T Consensus 163 A~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~ 242 (656)
T PRK15174 163 AISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG 242 (656)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 55555444321 122233322222 22345677778899999999999999875
Q ss_pred hccCccchHHHHHHHHHHHHHHhcCHHH----HHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHH
Q 022992 143 QNEEVTTSANQCKQKVAQYAAELEQYHK----SIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALER 218 (289)
Q Consensus 143 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~ 218 (289)
+.. ..++..+|.++...|++++ |+..|++++...+. ....+...|.++...|++++|...+++
T Consensus 243 p~~------~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-------~~~a~~~lg~~l~~~g~~~eA~~~l~~ 309 (656)
T PRK15174 243 LDG------AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-------NVRIVTLYADALIRTGQNEKAIPLLQQ 309 (656)
T ss_pred CCC------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 432 3678889999999999986 79999999754321 224567788889999999999999999
Q ss_pred HhhcCCCCCCchHHHHHHHHHHHHc-ccCHHHHHHHHHhccccCCCchhH
Q 022992 219 YQDMDPTFSGTREYRLLSDIAASMD-EEDIAKFTDVVKEFDSMTPLDPWK 267 (289)
Q Consensus 219 ~~~~~~~~~~~~e~~~l~~l~~a~~-~~d~~~~~~al~~~~~~~~~d~~~ 267 (289)
++.+.|... . ....++.++. .|+. .+|+..|..+...+|..
T Consensus 310 al~l~P~~~---~--a~~~La~~l~~~G~~---~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 310 SLATHPDLP---Y--VRAMYARALRQVGQY---TAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHhCCCCH---H--HHHHHHHHHHHCCCH---HHHHHHHHHHHHhCccc
Confidence 998877643 2 2334555443 4544 34444444444444443
No 28
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.37 E-value=1.6e-10 Score=114.08 Aligned_cols=195 Identities=14% Similarity=0.085 Sum_probs=126.6
Q ss_pred hHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHH----------
Q 022992 7 RAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANC---------- 62 (289)
Q Consensus 7 ~a~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~---------- 62 (289)
.+..++..|...++. |+|++|+..+.++ |.+|...|++++|...+.++.+.
T Consensus 21 ~~~~~~~~a~~~~~~-----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 95 (899)
T TIGR02917 21 SPESLIEAAKSYLQK-----NKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPL 95 (899)
T ss_pred CHHHHHHHHHHHHHc-----CChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHH
Confidence 455566666666663 5777777777665 56677788888888888877653
Q ss_pred ----HHhcC---------------CHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 022992 63 ----HLKLE---------------SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELY 122 (289)
Q Consensus 63 ----~~~~~---------------~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~ 122 (289)
+...| .....+..+..+|.++... ++++|+.+|+++++..+.. ...+..+|.++
T Consensus 96 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~ 169 (899)
T TIGR02917 96 LARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRS------LYAKLGLAQLA 169 (899)
T ss_pred HHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hhhHHHHHHHH
Confidence 11222 2233445566677777665 8888999888888765533 23667777777
Q ss_pred HhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHH
Q 022992 123 ESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGIC 202 (289)
Q Consensus 123 ~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 202 (289)
...|++++|+..+++++...+.. ...+..+|.++...|++++|+..|++++...+. ....+...+.+
T Consensus 170 ~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-------~~~~~~~~~~~ 236 (899)
T TIGR02917 170 LAENRFDEARALIDEVLTADPGN------VDALLLKGDLLLSLGNIELALAAYRKAIALRPN-------NPAVLLALATI 236 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-------CHHHHHHHHHH
Confidence 77788888888888777654322 245666777777777888888777777633211 11234445566
Q ss_pred HHccCCHHHHHHHHHHHhhcCCC
Q 022992 203 QLCKGDVVAITNALERYQDMDPT 225 (289)
Q Consensus 203 ~l~~gd~~~A~~~~~~~~~~~~~ 225 (289)
+...|+++.|...++......|.
T Consensus 237 ~~~~g~~~~A~~~~~~~~~~~~~ 259 (899)
T TIGR02917 237 LIEAGEFEEAEKHADALLKKAPN 259 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC
Confidence 66667777777666666655443
No 29
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.33 E-value=3e-10 Score=95.55 Aligned_cols=185 Identities=16% Similarity=0.076 Sum_probs=141.9
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc
Q 022992 27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI 105 (289)
Q Consensus 27 ~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~ 105 (289)
|.++..++.+...|..+...|++++|+..|.+++..+... .....++..+|.++... ++++|+..|+++++.++..
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~ 103 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS---PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNH 103 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC
Confidence 3566777778888888999999999999999998876432 22345678889998777 9999999999999998865
Q ss_pred CCHHHHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHHHhccCccchH-----------HHHHHHHHHHHHHhc
Q 022992 106 GRLSMAARYYKEIAELYESE--------HNIEQTIVFFEKAADMFQNEEVTTSA-----------NQCKQKVAQYAAELE 166 (289)
Q Consensus 106 g~~~~~a~~l~~la~~~~~~--------g~~~~A~~~y~~A~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g 166 (289)
.. ...++..+|.++... |++++|+..|++++..++........ ......+|.++...|
T Consensus 104 ~~---~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g 180 (235)
T TIGR03302 104 PD---ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRG 180 (235)
T ss_pred Cc---hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 54 344677888888765 78999999999999988765432111 011246788999999
Q ss_pred CHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022992 167 QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQD 221 (289)
Q Consensus 167 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~ 221 (289)
++.+|+..|++++......+ .....++.+|.++...|++.+|...++....
T Consensus 181 ~~~~A~~~~~~al~~~p~~~----~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 181 AYVAAINRFETVVENYPDTP----ATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred ChHHHHHHHHHHHHHCCCCc----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999985543221 1345678899999999999999998877543
No 30
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.31 E-value=1.2e-10 Score=115.42 Aligned_cols=198 Identities=12% Similarity=0.021 Sum_probs=134.0
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 022992 43 FKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAEL 121 (289)
Q Consensus 43 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~ 121 (289)
+...|++++|+..|.++..... .+ ..+..+|.++... ++++|+.+|++++...+.. ...+..++..
T Consensus 519 l~~~Gr~eeAi~~~rka~~~~p--~~-----~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~------~~l~~~La~~ 585 (987)
T PRK09782 519 AYQVEDYATALAAWQKISLHDM--SN-----EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGD------NALYWWLHAQ 585 (987)
T ss_pred HHHCCCHHHHHHHHHHHhccCC--Cc-----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc------HHHHHHHHHH
Confidence 3456677777777666533211 01 1234455555444 7788888888887653221 2233345555
Q ss_pred HHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHH
Q 022992 122 YESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGI 201 (289)
Q Consensus 122 ~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 201 (289)
....|++++|+.+|++|+++.+. ...+.++|.++.++|++++|+..|++++...+++ ...+.++|.
T Consensus 586 l~~~Gr~~eAl~~~~~AL~l~P~-------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~-------~~a~~nLG~ 651 (987)
T PRK09782 586 RYIPGQPELALNDLTRSLNIAPS-------ANAYVARATIYRQRHNVPAAVSDLRAALELEPNN-------SNYQAALGY 651 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHH
Confidence 55669999999999999988652 3578999999999999999999999998554322 245678888
Q ss_pred HHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHc-ccCHHHHHHHHHhccccCCCchhHHHHHHHHH
Q 022992 202 CQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMD-EEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVK 275 (289)
Q Consensus 202 ~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~-~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~ 275 (289)
++...|++++|...|++++++.|... .+...++.++. .|+.+ +|+..|+..-.++|.+..+-..+.
T Consensus 652 aL~~~G~~eeAi~~l~~AL~l~P~~~-----~a~~nLA~al~~lGd~~---eA~~~l~~Al~l~P~~a~i~~~~g 718 (987)
T PRK09782 652 ALWDSGDIAQSREMLERAHKGLPDDP-----ALIRQLAYVNQRLDDMA---ATQHYARLVIDDIDNQALITPLTP 718 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHCCCHH---HHHHHHHHHHhcCCCCchhhhhhh
Confidence 88999999999999999999887654 44666777664 66644 344444555555565554444333
No 31
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.3e-10 Score=104.54 Aligned_cols=180 Identities=17% Similarity=0.178 Sum_probs=135.0
Q ss_pred CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHH
Q 022992 27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA 91 (289)
Q Consensus 27 ~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A 91 (289)
+++++|-.+|.+| |..|...|.-++|..+|..|..++....-| +.-+|.=|... .+.-|
T Consensus 326 ~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP------~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP------SLYLGMEYMRTNNLKLA 399 (611)
T ss_pred cCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch------HHHHHHHHHHhccHHHH
Confidence 6666677766666 445666677777777777777776654433 12344445444 77788
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccc-hHHHHHHHHHHHHHHhcCHHH
Q 022992 92 ISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT-SANQCKQKVAQYAAELEQYHK 170 (289)
Q Consensus 92 ~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~ 170 (289)
-.+|.+|+.+.+..- -.++.+|.+....+.+.+|..+|+.++...+...... ...-.+.+||.++.+++.|++
T Consensus 400 e~Ff~~A~ai~P~Dp------lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 400 EKFFKQALAIAPSDP------LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred HHHHHHHHhcCCCcc------hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 888888888876433 3788999998877999999999999997776654432 233478999999999999999
Q ss_pred HHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992 171 SIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT 225 (289)
Q Consensus 171 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~ 225 (289)
|+.+|++++..... ....+..+|.||..+|.++.|+..|.+++.+.|-
T Consensus 474 AI~~~q~aL~l~~k-------~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~ 521 (611)
T KOG1173|consen 474 AIDYYQKALLLSPK-------DASTHASIGYIYHLLGNLDKAIDHFHKALALKPD 521 (611)
T ss_pred HHHHHHHHHHcCCC-------chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence 99999999854322 2345677899999999999999999999987664
No 32
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.28 E-value=8e-10 Score=112.84 Aligned_cols=200 Identities=12% Similarity=0.098 Sum_probs=143.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHH--------
Q 022992 40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM-------- 110 (289)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~-------- 110 (289)
|.++...|++++|+..|.+++...... ..++..+|.+|... ++++|+.+|+++++..+.......
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~------~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKD------SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 667788999999999999999985432 45788899999777 999999999999998876543211
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccccc
Q 022992 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKY 190 (289)
Q Consensus 111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 190 (289)
....+...|.++...|++++|+.+|++++.+.+.. ..++..+|.++...|++++|++.|++++.....+.....
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~------~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~ 423 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVDNTD------SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVR 423 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 11234456888888899999999999999986543 257889999999999999999999999754322211000
Q ss_pred ch-----------------------------------hhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHH
Q 022992 191 GV-----------------------------------KGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLL 235 (289)
Q Consensus 191 ~~-----------------------------------~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l 235 (289)
.. ...+...+.++...|++.+|...|++++.+.|... .+.
T Consensus 424 ~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~-----~~~ 498 (1157)
T PRK11447 424 GLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSV-----WLT 498 (1157)
T ss_pred HHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHH
Confidence 00 00112234556678999999999999999877643 234
Q ss_pred HHHHHHH-cccCHHHHHHHHHh
Q 022992 236 SDIAASM-DEEDIAKFTDVVKE 256 (289)
Q Consensus 236 ~~l~~a~-~~~d~~~~~~al~~ 256 (289)
..++..+ ..|+.+.....++.
T Consensus 499 ~~LA~~~~~~G~~~~A~~~l~~ 520 (1157)
T PRK11447 499 YRLAQDLRQAGQRSQADALMRR 520 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 4555555 36665444443333
No 33
>PRK12370 invasion protein regulator; Provisional
Probab=99.28 E-value=3.3e-10 Score=107.05 Aligned_cols=152 Identities=11% Similarity=-0.096 Sum_probs=103.2
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Q 022992 47 KSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE 125 (289)
Q Consensus 47 g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~ 125 (289)
+++++|...+.+++++.... +.++..+|.++... ++++|+.+|++|+++.+.. +.++..+|.++...
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~------~~a~~~lg~~l~~~ 385 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNN------PQALGLLGLINTIHSEYIVGSLLFKQANLLSPIS------ADIKYYYGWNLFMA 385 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHC
Confidence 34677788888777763321 34566677777555 8888888888888876543 23677888888888
Q ss_pred CCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHc
Q 022992 126 HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC 205 (289)
Q Consensus 126 g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~ 205 (289)
|++++|+.+|++|+++.+... .....++.++...|++++|+..+++++.... + .....+..+|.++..
T Consensus 386 G~~~eAi~~~~~Al~l~P~~~------~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~--p----~~~~~~~~la~~l~~ 453 (553)
T PRK12370 386 GQLEEALQTINECLKLDPTRA------AAGITKLWITYYHTGIDDAIRLGDELRSQHL--Q----DNPILLSMQVMFLSL 453 (553)
T ss_pred CCHHHHHHHHHHHHhcCCCCh------hhHHHHHHHHHhccCHHHHHHHHHHHHHhcc--c----cCHHHHHHHHHHHHh
Confidence 888888888888888765432 1223344456667888888888888763211 0 112234567778878
Q ss_pred cCCHHHHHHHHHHHhhc
Q 022992 206 KGDVVAITNALERYQDM 222 (289)
Q Consensus 206 ~gd~~~A~~~~~~~~~~ 222 (289)
.|++++|+..+.+....
T Consensus 454 ~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 454 KGKHELARKLTKEISTQ 470 (553)
T ss_pred CCCHHHHHHHHHHhhhc
Confidence 88888888888775443
No 34
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.27 E-value=2.3e-09 Score=105.85 Aligned_cols=98 Identities=11% Similarity=0.168 Sum_probs=53.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhh
Q 022992 115 YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKG 194 (289)
Q Consensus 115 l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 194 (289)
+..++.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+..|++++..... ...
T Consensus 570 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~ 636 (899)
T TIGR02917 570 ALALAQYYLGKGQLKKALAILNEAADAAPDS------PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-------SAL 636 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------ChH
Confidence 3445555555556666666555555433221 235566666666666666666666666532211 112
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992 195 HLLNAGICQLCKGDVVAITNALERYQDMDPT 225 (289)
Q Consensus 195 ~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~ 225 (289)
.+..++.++...|++++|...|+++....|.
T Consensus 637 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 667 (899)
T TIGR02917 637 ALLLLADAYAVMKNYAKAITSLKRALELKPD 667 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 3344555666666666666666666655544
No 35
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.26 E-value=7.4e-11 Score=107.89 Aligned_cols=178 Identities=17% Similarity=0.178 Sum_probs=145.2
Q ss_pred CCC--CCHHHHHHHHHHHHHH-------HH-------HcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-
Q 022992 24 LFG--SKYEDAADLFDKAANS-------FK-------LAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT- 86 (289)
Q Consensus 24 ~~~--~~~~~A~~~~~~A~~~-------~~-------~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~- 86 (289)
.|+ ++++.|+.+|.+|..+ |. ....+|.|..+|.+|+.+..+. =.+|..+|.+|.+.
T Consensus 430 cfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh------YnAwYGlG~vy~Kqe 503 (638)
T KOG1126|consen 430 CFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH------YNAWYGLGTVYLKQE 503 (638)
T ss_pred hhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh------hHHHHhhhhheeccc
Confidence 345 8999999999999542 33 4456777888888777764332 45889999999888
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhc
Q 022992 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE 166 (289)
Q Consensus 87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 166 (289)
.++.|.-+|++|+++-+.+-- .+.-+|.++.+.|+.++|+.+|++|+.+.+.+. -+...-|.++..++
T Consensus 504 k~e~Ae~~fqkA~~INP~nsv------i~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~------l~~~~~~~il~~~~ 571 (638)
T KOG1126|consen 504 KLEFAEFHFQKAVEINPSNSV------ILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP------LCKYHRASILFSLG 571 (638)
T ss_pred hhhHHHHHHHhhhcCCccchh------HHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc------hhHHHHHHHHHhhc
Confidence 999999999999999887664 778899999999999999999999999877643 46788899999999
Q ss_pred CHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC
Q 022992 167 QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTF 226 (289)
Q Consensus 167 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~ 226 (289)
+|++|+..+++.....++ ....++-+|.+|...|....|...|--+..++|.=
T Consensus 572 ~~~eal~~LEeLk~~vP~-------es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 572 RYVEALQELEELKELVPQ-------ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred chHHHHHHHHHHHHhCcc-------hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 999999999998644322 23456678999999999999999999888888763
No 36
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.26 E-value=4.1e-09 Score=100.21 Aligned_cols=217 Identities=16% Similarity=0.166 Sum_probs=158.5
Q ss_pred chHhhHHHHHHHHHHhhc----------cCCCCCCCHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHH
Q 022992 3 DQIARAEEFEKKAEKKLN----------GWGLFGSKYEDAADLFDKA-----------------ANSFKLAKSWDKAGAT 55 (289)
Q Consensus 3 ~~~~~a~~~~~~A~~~~k----------~~~~~~~~~~~A~~~~~~A-----------------~~~~~~~g~~~~A~~~ 55 (289)
+..+.|..++..|-+.-+ +.++|++||..+++++..| |++|..+|+|++|..+
T Consensus 250 ~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 456788889998877654 2357899999999988777 6778899999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCC---------------------------
Q 022992 56 YVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR--------------------------- 107 (289)
Q Consensus 56 ~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~--------------------------- 107 (289)
|.+++.+.... -.-.+..+|..|... ++..|+.||++.+..++.+-.
T Consensus 330 Y~~s~k~~~d~-----~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~ 404 (1018)
T KOG2002|consen 330 YMESLKADNDN-----FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLG 404 (1018)
T ss_pred HHHHHccCCCC-----ccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHH
Confidence 99998775322 122344555555444 666666666665544332110
Q ss_pred -----HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992 108 -----LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS 182 (289)
Q Consensus 108 -----~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 182 (289)
...-..+|..+|.++.. +++-.++..|..|++++...+.+ .-.++++++|..+..+|.+++|...|.++....
T Consensus 405 K~~~~~~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~ 482 (1018)
T KOG2002|consen 405 KVLEQTPVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKL 482 (1018)
T ss_pred HHHhcccccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhh
Confidence 01224478889999988 88888899999999999888777 556899999999999999999999999997542
Q ss_pred h--hcccc--ccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992 183 L--NNNLL--KYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS 227 (289)
Q Consensus 183 ~--~~~~~--~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~ 227 (289)
. .+.-. ..+ -...++++.|.-+.+++..|.+.|...+..+|+|-
T Consensus 483 ~~~~n~de~~~~~-lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YI 530 (1018)
T KOG2002|consen 483 LEVANKDEGKSTN-LTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYI 530 (1018)
T ss_pred hhhcCccccccch-hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhH
Confidence 1 11111 011 11246788888888899999999999888888874
No 37
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.25 E-value=6.5e-10 Score=96.85 Aligned_cols=175 Identities=9% Similarity=-0.057 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHH
Q 022992 31 DAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLS 109 (289)
Q Consensus 31 ~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~ 109 (289)
.-...+..-|.+|...|++++|...|.+++++..+. ..++..+|.++... ++++|+..|++|+++.+...
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~--- 132 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM------ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN--- 132 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---
Confidence 334567777889999999999999999999875432 56888999999777 99999999999999876543
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh------
Q 022992 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSL------ 183 (289)
Q Consensus 110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~------ 183 (289)
.++.++|.++...|++++|+..|++++.+.+.... ...+ ..+....+++++|+..|++......
T Consensus 133 ---~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~----~~~~---~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~ 202 (296)
T PRK11189 133 ---YAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY----RALW---LYLAESKLDPKQAKENLKQRYEKLDKEQWGW 202 (296)
T ss_pred ---HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHHH---HHHHHccCCHHHHHHHHHHHHhhCCccccHH
Confidence 37899999999999999999999999988765421 0011 1233446678888888866542110
Q ss_pred -------hcc-----------------ccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCC
Q 022992 184 -------NNN-----------------LLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDP 224 (289)
Q Consensus 184 -------~~~-----------------~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~ 224 (289)
+.. .........++.+|.++...|++++|...|++++++.+
T Consensus 203 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 203 NIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred HHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 000 00000113456667777777888888888877777653
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=2.5e-09 Score=94.38 Aligned_cols=176 Identities=16% Similarity=0.147 Sum_probs=130.6
Q ss_pred CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHH
Q 022992 27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA 91 (289)
Q Consensus 27 ~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A 91 (289)
++.++|+.+|..| |.-|...++...|+++|.+|+++-+.- =++|..+|+.|.-. .+.=|
T Consensus 344 ~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D------yRAWYGLGQaYeim~Mh~Ya 417 (559)
T KOG1155|consen 344 SEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD------YRAWYGLGQAYEIMKMHFYA 417 (559)
T ss_pred HhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh------HHHHhhhhHHHHHhcchHHH
Confidence 4556777777776 445888999999999999999996531 35788999999777 78889
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHH
Q 022992 92 ISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS 171 (289)
Q Consensus 92 ~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 171 (289)
+-+|++|+.+-+... +.|..+|.||.++++.++|+.+|.+|+..-... ..++..||.+|.+++++++|
T Consensus 418 LyYfqkA~~~kPnDs------Rlw~aLG~CY~kl~~~~eAiKCykrai~~~dte------~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 418 LYYFQKALELKPNDS------RLWVALGECYEKLNRLEEAIKCYKRAILLGDTE------GSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHHHHHHHhcCCCch------HHHHHHHHHHHHhccHHHHHHHHHHHHhccccc------hHHHHHHHHHHHHHHhHHHH
Confidence 999999999866443 499999999999999999999999999874433 36899999999999999999
Q ss_pred HHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHh
Q 022992 172 IEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (289)
Q Consensus 172 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~ 220 (289)
..+|++-+....-.+...-.+..+..-+..-....+|++.|.......+
T Consensus 486 a~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 486 AQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 9999998753311111011111111113333456788888766555443
No 39
>PRK12370 invasion protein regulator; Provisional
Probab=99.18 E-value=2.9e-09 Score=100.65 Aligned_cols=199 Identities=10% Similarity=0.004 Sum_probs=136.1
Q ss_pred CCHHHHHHHHHHHHHH-HH-HcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC----------CHHHHHHH
Q 022992 27 SKYEDAADLFDKAANS-FK-LAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT----------SSNEAISC 94 (289)
Q Consensus 27 ~~~~~A~~~~~~A~~~-~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~----------~~~~A~~~ 94 (289)
++++ |..+|-++... ++ ..+++++|..+|.+|+++.... +.++..+|.+|... ++++|+.+
T Consensus 254 ~~~d-a~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~------a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~ 326 (553)
T PRK12370 254 NSID-STMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNS------IAPYCALAECYLSMAQMGIFDKQNAMIKAKEH 326 (553)
T ss_pred CChH-HHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHHHHcCCcccchHHHHHHHH
Confidence 3444 44455555322 22 2346789999999998874422 34555666654311 47899999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHH
Q 022992 95 LEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEI 174 (289)
Q Consensus 95 ~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 174 (289)
+++|+++.+... .++..+|.++...|++++|+.+|++|+++.+.. ..++..+|.++...|++++|+..
T Consensus 327 ~~~Al~ldP~~~------~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~------~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 327 AIKATELDHNNP------QALGLLGLINTIHSEYIVGSLLFKQANLLSPIS------ADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred HHHHHhcCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999966543 478889999999999999999999999986653 25788999999999999999999
Q ss_pred HHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcC-CCCCCchHHHHHHHHHHHH-cccCHHHHHH
Q 022992 175 YEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMD-PTFSGTREYRLLSDIAASM-DEEDIAKFTD 252 (289)
Q Consensus 175 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~-~~~~~~~e~~~l~~l~~a~-~~~d~~~~~~ 252 (289)
|++++...+..+ ......+.+++..|++++|...+++++... |.. .. ....++.++ ..|+.+....
T Consensus 395 ~~~Al~l~P~~~-------~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~---~~--~~~~la~~l~~~G~~~eA~~ 462 (553)
T PRK12370 395 INECLKLDPTRA-------AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDN---PI--LLSMQVMFLSLKGKHELARK 462 (553)
T ss_pred HHHHHhcCCCCh-------hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccC---HH--HHHHHHHHHHhCCCHHHHHH
Confidence 999985432211 111223334556899999999999987654 332 22 233345544 4677666555
Q ss_pred HHHh
Q 022992 253 VVKE 256 (289)
Q Consensus 253 al~~ 256 (289)
.+..
T Consensus 463 ~~~~ 466 (553)
T PRK12370 463 LTKE 466 (553)
T ss_pred HHHH
Confidence 5544
No 40
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.3e-08 Score=91.32 Aligned_cols=228 Identities=16% Similarity=0.254 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc-CCHH
Q 022992 32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI-GRLS 109 (289)
Q Consensus 32 A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~-g~~~ 109 (289)
.+.-...+|+......+|..|+.+|.+++++....++. ++.+.+|... .+.+.+..+..|++..... -+.-
T Consensus 223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~-------~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~k 295 (539)
T KOG0548|consen 223 KAHKEKELGNAAYKKKDFETAIQHYAKALELATDITYL-------NNIAAVYLERGKYAECIELCEKAVEVGRELRADYK 295 (539)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHH-------HHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHH
Confidence 44456677888888889999999999999997544443 4444444333 4444444444444443322 1223
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCcc--------------------chHHHHHHHHHHHHHHhcCHH
Q 022992 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT--------------------TSANQCKQKVAQYAAELEQYH 169 (289)
Q Consensus 110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~--------------------~~~~~~~~~l~~~~~~~g~~~ 169 (289)
..+.++..+|..+...++++.|+.+|++++.-++..... ...+.-...-|.-+...|+|.
T Consensus 296 lIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 296 LIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYP 375 (539)
T ss_pred HHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHH
Confidence 478888889999999999999999999998877641100 111222344477788899999
Q ss_pred HHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccCHHH
Q 022992 170 KSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAK 249 (289)
Q Consensus 170 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d~~~ 249 (289)
.|+..|.+++...+.+ ...|.|.+.||+..|.+..|.+..+...+++|.|... . ++. +.++ .-...
T Consensus 376 ~Av~~YteAIkr~P~D-------a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kg---y-~RK-g~al--~~mk~ 441 (539)
T KOG0548|consen 376 EAVKHYTEAIKRDPED-------ARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKA---Y-LRK-GAAL--RAMKE 441 (539)
T ss_pred HHHHHHHHHHhcCCch-------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHH---H-HHH-HHHH--HHHHH
Confidence 9999999988553222 3357888999999999999999999888888877521 1 111 1111 11355
Q ss_pred HHHHHHhccccCCCchhHHHHHHHHHHhccc
Q 022992 250 FTDVVKEFDSMTPLDPWKTTLLLRVKEKLKA 280 (289)
Q Consensus 250 ~~~al~~~~~~~~~d~~~~~~~~~~~~~~~~ 280 (289)
+..++..|..-..+||.+...+..+++++.+
T Consensus 442 ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 442 YDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 6777777777777889999999999998875
No 41
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.13 E-value=1.1e-07 Score=95.11 Aligned_cols=223 Identities=11% Similarity=0.048 Sum_probs=162.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCH--HHHHHHHH
Q 022992 40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL--SMAARYYK 116 (289)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~--~~~a~~l~ 116 (289)
+.++...|++++|...+.++....+..|+....+.++..+|.++... ++++|..++++++++....+.. ...+..+.
T Consensus 498 g~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 577 (903)
T PRK04841 498 GEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLR 577 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 45567799999999999999999999999888888888989988666 9999999999999998876632 22344566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccc-ccc-----
Q 022992 117 EIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNL-LKY----- 190 (289)
Q Consensus 117 ~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~----- 190 (289)
.+|.++...|++++|..++.+++.+.+..+. .....++..++.++...|++++|...++++......... ...
T Consensus 578 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~ 656 (903)
T PRK04841 578 IRAQLLWEWARLDEAEQCARKGLEVLSNYQP-QQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANAD 656 (903)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhHHhhhccCc-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHH
Confidence 7888888889999999999999999876553 334567788999999999999999998887532111000 000
Q ss_pred ----------------------------c----hhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCc-hHHHHHHH
Q 022992 191 ----------------------------G----VKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGT-REYRLLSD 237 (289)
Q Consensus 191 ----------------------------~----~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~-~e~~~l~~ 237 (289)
. .......++.++...|++.+|...+++++......+.. .....+..
T Consensus 657 ~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~ 736 (903)
T PRK04841 657 KVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLIL 736 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 0 00012345667778899999999999988765554422 23444555
Q ss_pred HHHHH-cccCH----HHHHHHHHhccccCCC
Q 022992 238 IAASM-DEEDI----AKFTDVVKEFDSMTPL 263 (289)
Q Consensus 238 l~~a~-~~~d~----~~~~~al~~~~~~~~~ 263 (289)
++.++ ..|+. ..+++|+..+...+..
T Consensus 737 la~a~~~~G~~~~A~~~L~~Al~la~~~g~~ 767 (903)
T PRK04841 737 LNQLYWQQGRKSEAQRVLLEALKLANRTGFI 767 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhCccchh
Confidence 55555 47774 5677777777665543
No 42
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.12 E-value=7.7e-09 Score=86.90 Aligned_cols=164 Identities=16% Similarity=0.175 Sum_probs=122.9
Q ss_pred HhhHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHHHHHHHHHHhcC
Q 022992 5 IARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKA-----------------ANSFKLAKSWDKAGATYVKLANCHLKLE 67 (289)
Q Consensus 5 ~~~a~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A-----------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 67 (289)
...+..++..+...++. ++|++|...|.++ |.+|...|++++|+..|.++++.+....
T Consensus 30 ~~~~~~~~~~g~~~~~~-----~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~ 104 (235)
T TIGR03302 30 EWPAEELYEEAKEALDS-----GDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP 104 (235)
T ss_pred cCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 44566677777766652 4666666666544 5678889999999999999999876433
Q ss_pred CHHHHHHHHHHHHHHHcc---------CCHHHHHHHHHHHHHHHHhcCCHHHH-----------HHHHHHHHHHHHhcCC
Q 022992 68 SKHEAAQAYVDAAHCYKK---------TSSNEAISCLEQAVNMFCDIGRLSMA-----------ARYYKEIAELYESEHN 127 (289)
Q Consensus 68 ~~~~aa~~~~~~a~~~~~---------~~~~~A~~~~~~A~~~~~~~g~~~~~-----------a~~l~~la~~~~~~g~ 127 (289)
. ...++..+|.++.. .++++|++.+++++..++.......+ ......+|.++...|+
T Consensus 105 ~---~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~ 181 (235)
T TIGR03302 105 D---ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGA 181 (235)
T ss_pred c---hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 2 23356666777643 26889999999999888876543211 1223477889999999
Q ss_pred HHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992 128 IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (289)
Q Consensus 128 ~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 179 (289)
+.+|+..|+++++.++.. .....++..+|.++..+|++++|+.+++...
T Consensus 182 ~~~A~~~~~~al~~~p~~---~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 182 YVAAINRFETVVENYPDT---PATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred hHHHHHHHHHHHHHCCCC---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999988764 2345788999999999999999999988775
No 43
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.11 E-value=3.9e-08 Score=83.47 Aligned_cols=217 Identities=17% Similarity=0.156 Sum_probs=105.5
Q ss_pred CCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHccC-
Q 022992 23 GLFGSKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLES-KHEAAQAYVDAAHCYKKT- 86 (289)
Q Consensus 23 ~~~~~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~aa~~~~~~a~~~~~~- 86 (289)
++.+...++|++.|-.. |++|+..|..|.|+..++...+-- +- ...-..++..+|.-|...
T Consensus 45 fLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp---dlT~~qr~lAl~qL~~Dym~aG 121 (389)
T COG2956 45 FLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP---DLTFEQRLLALQQLGRDYMAAG 121 (389)
T ss_pred HHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC---CCchHHHHHHHHHHHHHHHHhh
Confidence 45567778899888876 688999999998888776544321 10 112233444444444433
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhc
Q 022992 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE 166 (289)
Q Consensus 87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 166 (289)
-++.|...|....+. +.-+-.++..+-.+|+...+.++||+.-++-+.+-.+ .....++..+..++.-+....
T Consensus 122 l~DRAE~~f~~L~de------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q-~~~~eIAqfyCELAq~~~~~~ 194 (389)
T COG2956 122 LLDRAEDIFNQLVDE------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ-TYRVEIAQFYCELAQQALASS 194 (389)
T ss_pred hhhHHHHHHHHHhcc------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc-cchhHHHHHHHHHHHHHhhhh
Confidence 333333333322211 2233344555555555555555555555444443222 122334445555555555555
Q ss_pred CHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHc-cc
Q 022992 167 QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMD-EE 245 (289)
Q Consensus 167 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~-~~ 245 (289)
+.+.|+..+.+++..... ... +-..+|.+++..|++.+|++.++..++.+|.|. ..++..|..+|. .|
T Consensus 195 ~~d~A~~~l~kAlqa~~~----cvR---Asi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl----~evl~~L~~~Y~~lg 263 (389)
T COG2956 195 DVDRARELLKKALQADKK----CVR---ASIILGRVELAKGDYQKAVEALERVLEQNPEYL----SEVLEMLYECYAQLG 263 (389)
T ss_pred hHHHHHHHHHHHHhhCcc----cee---hhhhhhHHHHhccchHHHHHHHHHHHHhChHHH----HHHHHHHHHHHHHhC
Confidence 555555555555422100 000 112234455555555555555555555444442 123444444443 55
Q ss_pred CHHHHHHHHHhcccc
Q 022992 246 DIAKFTDVVKEFDSM 260 (289)
Q Consensus 246 d~~~~~~al~~~~~~ 260 (289)
+++.+..-+..+...
T Consensus 264 ~~~~~~~fL~~~~~~ 278 (389)
T COG2956 264 KPAEGLNFLRRAMET 278 (389)
T ss_pred CHHHHHHHHHHHHHc
Confidence 555555554444443
No 44
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.10 E-value=3e-08 Score=94.54 Aligned_cols=179 Identities=15% Similarity=0.144 Sum_probs=138.6
Q ss_pred CCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHc---cC-C
Q 022992 27 SKYEDAADLFDKA---------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYK---KT-S 87 (289)
Q Consensus 27 ~~~~~A~~~~~~A---------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~---~~-~ 87 (289)
+||-+|+.+|..| |.||...|+.+.|...|++++++-. ..+.++..+|.+-. .. .
T Consensus 178 kdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp------~~v~alv~L~~~~l~~~d~~s 251 (1018)
T KOG2002|consen 178 KDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDP------TCVSALVALGEVDLNFNDSDS 251 (1018)
T ss_pred ccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcCh------hhHHHHHHHHHHHHHccchHH
Confidence 8999999999997 5689999999999999999998843 23444545554432 22 6
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcC
Q 022992 88 SNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQ 167 (289)
Q Consensus 88 ~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 167 (289)
+..++..+.+|-.+...+-. +++-++..+..-|+|+.+...+.-|+.... .....++.+.++|..|-.+|+
T Consensus 252 ~~~~~~ll~~ay~~n~~nP~------~l~~LAn~fyfK~dy~~v~~la~~ai~~t~---~~~~~aes~Y~~gRs~Ha~Gd 322 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKENNENPV------ALNHLANHFYFKKDYERVWHLAEHAIKNTE---NKSIKAESFYQLGRSYHAQGD 322 (1018)
T ss_pred HHHHHHHHHHHHhhcCCCcH------HHHHHHHHHhhcccHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHhhcc
Confidence 77888888888777655554 888888888877999999999999987642 234566789999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC
Q 022992 168 YHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTF 226 (289)
Q Consensus 168 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~ 226 (289)
|++|..+|.++.....++ + --.++.+|.+++..||+..+.-+|++.+...|.-
T Consensus 323 ~ekA~~yY~~s~k~~~d~----~--~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~ 375 (1018)
T KOG2002|consen 323 FEKAFKYYMESLKADNDN----F--VLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNN 375 (1018)
T ss_pred HHHHHHHHHHHHccCCCC----c--cccccchhHHHHHhchHHHHHHHHHHHHHhCcch
Confidence 999999999987432221 1 1124568899999999999999999998876653
No 45
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=3.7e-08 Score=88.57 Aligned_cols=220 Identities=12% Similarity=0.088 Sum_probs=150.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCC------H--
Q 022992 39 AANSFKLAKSWDKAGATYVKLANCHLKLE-SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR------L-- 108 (289)
Q Consensus 39 A~~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~------~-- 108 (289)
.+.+|...|.+.+++....++.+.-+... +....+.++..+|..|... +++.++.+|++++.-++.... .
T Consensus 263 ~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek 342 (539)
T KOG0548|consen 263 IAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEK 342 (539)
T ss_pred HHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHH
Confidence 35566777888888888777777765443 3445778888889999777 999999999999887765111 0
Q ss_pred ------------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 022992 109 ------------SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYE 176 (289)
Q Consensus 109 ------------~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 176 (289)
...+.....-|..+...|+|..|+.+|.+|+...+.+. ..+.+.|-+|.++|.+..|++..+
T Consensus 343 ~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da------~lYsNRAac~~kL~~~~~aL~Da~ 416 (539)
T KOG0548|consen 343 ALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDA------RLYSNRAACYLKLGEYPEALKDAK 416 (539)
T ss_pred HHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchh------HHHHHHHHHHHHHhhHHHHHHHHH
Confidence 11133334458888888999999999999998765443 578999999999999999999988
Q ss_pred HHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHH-HHHHHHHHHHc-ccCH-HHHHHH
Q 022992 177 EIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREY-RLLSDIAASMD-EEDI-AKFTDV 253 (289)
Q Consensus 177 ~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~-~~l~~l~~a~~-~~d~-~~~~~a 253 (289)
..+.. .. .....|++-|.|+..+.+++.|.++|+++++.+|.- .|. .-+..+..+.. ..++ +..+++
T Consensus 417 ~~ieL--~p-----~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~---~e~~~~~~rc~~a~~~~~~~ee~~~r~ 486 (539)
T KOG0548|consen 417 KCIEL--DP-----NFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSN---AEAIDGYRRCVEAQRGDETPEETKRRA 486 (539)
T ss_pred HHHhc--Cc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh---HHHHHHHHHHHHHhhcCCCHHHHHHhh
Confidence 88743 21 122346666888888999999999999999987653 232 22333444331 2223 444554
Q ss_pred HHhccccCC--CchhHHHHHHHHH
Q 022992 254 VKEFDSMTP--LDPWKTTLLLRVK 275 (289)
Q Consensus 254 l~~~~~~~~--~d~~~~~~~~~~~ 275 (289)
+.+ +.+.. .||.++.++....
T Consensus 487 ~~d-pev~~il~d~~m~~~l~q~q 509 (539)
T KOG0548|consen 487 MAD-PEVQAILQDPAMRQILEQMQ 509 (539)
T ss_pred ccC-HHHHHHHcCHHHHHHHHHHH
Confidence 444 33322 3666665555443
No 46
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.08 E-value=5.3e-08 Score=83.86 Aligned_cols=192 Identities=19% Similarity=0.190 Sum_probs=147.5
Q ss_pred CCHHHHHHHHHHH--------------------HHHHHHcCCHHHHHHHHHHHHHHHHhcC--CHHH--HHHHHHHHHHH
Q 022992 27 SKYEDAADLFDKA--------------------ANSFKLAKSWDKAGATYVKLANCHLKLE--SKHE--AAQAYVDAAHC 82 (289)
Q Consensus 27 ~~~~~A~~~~~~A--------------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~--aa~~~~~~a~~ 82 (289)
+-+.++.+.|+.| +.+|-...|+++|+-+-.+|+++.+..+ ++.. -+-++..++..
T Consensus 136 s~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaVa 215 (518)
T KOG1941|consen 136 SVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVA 215 (518)
T ss_pred HHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHH
Confidence 3456666666666 4568888999999999999999998765 4322 23345556777
Q ss_pred HccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHH
Q 022992 83 YKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQY 161 (289)
Q Consensus 83 ~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~ 161 (289)
++.. ++..|.++++.|..+....||....++++.-+|.+|...|+.+.|...|++|..+....|+......++...+.+
T Consensus 216 lR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc 295 (518)
T KOG1941|consen 216 LRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKC 295 (518)
T ss_pred HHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 7766 999999999999999999999999999999999999999999999999999999999999988888888888888
Q ss_pred HHHhcCHHH-----HHHHHHHHHHH--HhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022992 162 AAELEQYHK-----SIEIYEEIARQ--SLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQD 221 (289)
Q Consensus 162 ~~~~g~~~~-----A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~ 221 (289)
+....-..+ |++.-++.+.. .++. ++.+......+..+|..+|+.++-...+.++-+
T Consensus 296 ~~~~r~~~k~~~Crale~n~r~levA~~IG~---K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~ 359 (518)
T KOG1941|consen 296 LETLRLQNKICNCRALEFNTRLLEVASSIGA---KLSVLKLHCRLASIYRSKGLQDELRAHVVRAHE 359 (518)
T ss_pred HHHHHHhhcccccchhHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 876654444 77777766533 2332 222333345567788888877776666666533
No 47
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.06 E-value=8e-08 Score=82.79 Aligned_cols=207 Identities=14% Similarity=0.117 Sum_probs=144.4
Q ss_pred HHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCcc----chHHH
Q 022992 79 AAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT----TSANQ 153 (289)
Q Consensus 79 ~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~----~~~~~ 153 (289)
++.++.-. .+++++++|++|+.+...++|+...-.+...+|..+..+.|+++|+-+..+|+++....+-. .....
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 34444333 57899999999999999999999999999999999999999999999999999998766522 22334
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-CchHH
Q 022992 154 CKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS-GTREY 232 (289)
Q Consensus 154 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~-~~~e~ 232 (289)
++..++..+..+|+...|.++.+++....+..+.-... ...+...+-+|...||.+.|...|+.+..+..+.+ +-.+.
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~-arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv 286 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ-ARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQV 286 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH-HHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHH
Confidence 67788888999999999999999996443332111111 22344567889999999999888888776655554 22344
Q ss_pred HHHHHHHHHHcc---c-------CHHHHHHHHHhccccCCCchhHHHHHHHHHHhccccccccCC
Q 022992 233 RLLSDIAASMDE---E-------DIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKELEEDD 287 (289)
Q Consensus 233 ~~l~~l~~a~~~---~-------d~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 287 (289)
..+......... . -++.-++.++...+++. ...-.++-.|++...+..|++.++
T Consensus 287 ~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~-K~~vlK~hcrla~iYrs~gl~d~~ 350 (518)
T KOG1941|consen 287 EALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGA-KLSVLKLHCRLASIYRSKGLQDEL 350 (518)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhccchhHH
Confidence 444443332210 0 13555566666556653 233446777888888888887654
No 48
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.06 E-value=2.4e-09 Score=73.86 Aligned_cols=72 Identities=25% Similarity=0.439 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 022992 72 AAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLS-MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ 143 (289)
Q Consensus 72 aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~-~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~ 143 (289)
.+.++.++|.+|... ++++|+++|++|+++....|+.. ..+.++.++|.++...|++++|+++|++|+++++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 345556666666554 66666666666666655555433 3466666666666666666666666666666543
No 49
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=1.8e-08 Score=91.19 Aligned_cols=194 Identities=15% Similarity=0.147 Sum_probs=136.0
Q ss_pred CcchHhhHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH--------------HHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 022992 1 MGDQIARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDK--------------AANSFKLAKSWDKAGATYVKLANCHLKL 66 (289)
Q Consensus 1 ~~~~~~~a~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~--------------A~~~~~~~g~~~~A~~~~~~a~~~~~~~ 66 (289)
+||++++++.||++. +..+|+-+|+. .|.+...-++=..|+..+++|+++-...
T Consensus 285 ~pdPf~eG~~lm~nG------------~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~N 352 (579)
T KOG1125|consen 285 HPDPFKEGCNLMKNG------------DLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTN 352 (579)
T ss_pred CCChHHHHHHHHhcC------------CchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCcc
Confidence 456667777666654 34444444444 4566666667788899999998874321
Q ss_pred CCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHH----------------------------------HHhcCCH---
Q 022992 67 ESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNM----------------------------------FCDIGRL--- 108 (289)
Q Consensus 67 ~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~----------------------------------~~~~g~~--- 108 (289)
-.++..+|..|... .-.+|..++.+-+.. |......
T Consensus 353 ------leaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~ 426 (579)
T KOG1125|consen 353 ------LEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPT 426 (579)
T ss_pred ------HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 33556666666544 344566665555433 2211100
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccc
Q 022992 109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLL 188 (289)
Q Consensus 109 ~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 188 (289)
..-+++...||++|.-.|++++|+.+|+.|+..-+.+. ..+++||-.+....+..+|+..|++++... ++.
T Consensus 427 ~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~------~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--P~y- 497 (579)
T KOG1125|consen 427 KIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDY------LLWNRLGATLANGNRSEEAISAYNRALQLQ--PGY- 497 (579)
T ss_pred CCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchH------HHHHHhhHHhcCCcccHHHHHHHHHHHhcC--CCe-
Confidence 12355677889999999999999999999998766554 578999999999999999999999998443 221
Q ss_pred ccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992 189 KYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT 225 (289)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~ 225 (289)
....+++|+++.-.|.+.+|.+.|-.++.+.+.
T Consensus 498 ----VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 498 ----VRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred ----eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 123478999999999999999999999887765
No 50
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.05 E-value=8.5e-07 Score=88.82 Aligned_cols=184 Identities=12% Similarity=-0.033 Sum_probs=143.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022992 39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKE 117 (289)
Q Consensus 39 A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~ 117 (289)
.+.++...|++++|...+.++++... .++....+.++..+|.++... ++++|..++++++......|.....+.++..
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~ 536 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAELP-LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQ 536 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence 35567789999999999999987633 234444556667788887655 9999999999999999999999888999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhccCcc--chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhH
Q 022992 118 IAELYESEHNIEQTIVFFEKAADMFQNEEVT--TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGH 195 (289)
Q Consensus 118 la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 195 (289)
+|.++...|++++|..++++++++....+.. .....++..+|.++...|++++|...++++........ .......
T Consensus 537 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~--~~~~~~~ 614 (903)
T PRK04841 537 QSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ--PQQQLQC 614 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC--chHHHHH
Confidence 9999999999999999999999998776532 22234466789999999999999999999874432111 1112234
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992 196 LLNAGICQLCKGDVVAITNALERYQDMDPT 225 (289)
Q Consensus 196 ~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~ 225 (289)
+..++.++...|++..|...+..+..+...
T Consensus 615 ~~~la~~~~~~G~~~~A~~~l~~a~~~~~~ 644 (903)
T PRK04841 615 LAMLAKISLARGDLDNARRYLNRLENLLGN 644 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 455677888999999999999988765443
No 51
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.04 E-value=4.7e-09 Score=81.48 Aligned_cols=114 Identities=12% Similarity=0.064 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHH
Q 022992 92 ISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS 171 (289)
Q Consensus 92 ~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 171 (289)
..++++|+++-+.. +...|.++...|++++|+.+|++++.+.+.. ..++..+|.++..+|++++|
T Consensus 13 ~~~~~~al~~~p~~---------~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~A 77 (144)
T PRK15359 13 EDILKQLLSVDPET---------VYASGYASWQEGDYSRAVIDFSWLVMAQPWS------WRAHIALAGTWMMLKEYTTA 77 (144)
T ss_pred HHHHHHHHHcCHHH---------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHHhhHHHH
Confidence 35677887776642 4567888888999999999999999875543 36889999999999999999
Q ss_pred HHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992 172 IEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS 227 (289)
Q Consensus 172 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~ 227 (289)
+..|++++.... .....++++|.|+...|++.+|...|++++.+.|...
T Consensus 78 ~~~y~~Al~l~p-------~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~ 126 (144)
T PRK15359 78 INFYGHALMLDA-------SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADA 126 (144)
T ss_pred HHHHHHHHhcCC-------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 999999985432 2234678899999999999999999999999888765
No 52
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.01 E-value=4.9e-08 Score=85.05 Aligned_cols=153 Identities=13% Similarity=0.047 Sum_probs=116.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Q 022992 47 KSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE 125 (289)
Q Consensus 47 g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~ 125 (289)
+..+.++..+.+++.... -++...+..+.+.|.+|... ++++|+..|++|+.+.+.. +.++..+|.++...
T Consensus 40 ~~~e~~i~~~~~~l~~~~--~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~------~~a~~~lg~~~~~~ 111 (296)
T PRK11189 40 LQQEVILARLNQILASRD--LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM------ADAYNYLGIYLTQA 111 (296)
T ss_pred hHHHHHHHHHHHHHcccc--CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHC
Confidence 455677777777664321 24456678899999999776 9999999999999987654 45999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHc
Q 022992 126 HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC 205 (289)
Q Consensus 126 g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~ 205 (289)
|++++|+..|++|+++.+... .++.++|.++...|++++|++.|++++...+.++ + ...+. .+...
T Consensus 112 g~~~~A~~~~~~Al~l~P~~~------~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~---~--~~~~~---~l~~~ 177 (296)
T PRK11189 112 GNFDAAYEAFDSVLELDPTYN------YAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP---Y--RALWL---YLAES 177 (296)
T ss_pred CCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---H--HHHHH---HHHHc
Confidence 999999999999999876542 4789999999999999999999999985543221 1 11111 12345
Q ss_pred cCCHHHHHHHHHHHhh
Q 022992 206 KGDVVAITNALERYQD 221 (289)
Q Consensus 206 ~gd~~~A~~~~~~~~~ 221 (289)
.++.++|...|.+...
T Consensus 178 ~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 178 KLDPKQAKENLKQRYE 193 (296)
T ss_pred cCCHHHHHHHHHHHHh
Confidence 6788888888866543
No 53
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.01 E-value=5.1e-09 Score=72.24 Aligned_cols=73 Identities=16% Similarity=0.312 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccc-hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992 109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT-SANQCKQKVAQYAAELEQYHKSIEIYEEIARQ 181 (289)
Q Consensus 109 ~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 181 (289)
...+.++.++|.+|..+|++++|+.+|++|+++.+..|... ..+.++.++|.++..+|++++|+++|++++..
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45788999999999999999999999999999977777554 46889999999999999999999999999743
No 54
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.01 E-value=1.4e-08 Score=89.75 Aligned_cols=218 Identities=15% Similarity=0.135 Sum_probs=147.0
Q ss_pred CCHHHHHHHHHHHHHH--------------HHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHH
Q 022992 27 SKYEDAADLFDKAANS--------------FKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA 91 (289)
Q Consensus 27 ~~~~~A~~~~~~A~~~--------------~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A 91 (289)
.++..|.++.+.|.++ -...|++++|+++|..|+ ++......++.++|..+... ++++|
T Consensus 470 k~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal------~ndasc~ealfniglt~e~~~~ldea 543 (840)
T KOG2003|consen 470 KDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEAL------NNDASCTEALFNIGLTAEALGNLDEA 543 (840)
T ss_pred cchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHH------cCchHHHHHHHHhcccHHHhcCHHHH
Confidence 4566666665555332 223578888888887775 34455677888999998877 99999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHH
Q 022992 92 ISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS 171 (289)
Q Consensus 92 ~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 171 (289)
++||-+...+... -+.+|+.++.+|+.+.++.+||++|.++..+.+.+. .++.+||++|-.-|+-.+|
T Consensus 544 ld~f~klh~il~n------n~evl~qianiye~led~aqaie~~~q~~slip~dp------~ilskl~dlydqegdksqa 611 (840)
T KOG2003|consen 544 LDCFLKLHAILLN------NAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDP------AILSKLADLYDQEGDKSQA 611 (840)
T ss_pred HHHHHHHHHHHHh------hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCH------HHHHHHHHHhhcccchhhh
Confidence 9999988888764 456999999999999999999999999988876543 5789999999999999999
Q ss_pred HHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccCHHHHH
Q 022992 172 IEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFT 251 (289)
Q Consensus 172 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d~~~~~ 251 (289)
..++-+.....+- ...+.+ -++..|+...=+++++..|+++.-+-|....+ +|..+.+..+...++
T Consensus 612 fq~~ydsyryfp~----nie~ie---wl~ayyidtqf~ekai~y~ekaaliqp~~~kw-------qlmiasc~rrsgnyq 677 (840)
T KOG2003|consen 612 FQCHYDSYRYFPC----NIETIE---WLAAYYIDTQFSEKAINYFEKAALIQPNQSKW-------QLMIASCFRRSGNYQ 677 (840)
T ss_pred hhhhhhcccccCc----chHHHH---HHHHHHHhhHHHHHHHHHHHHHHhcCccHHHH-------HHHHHHHHHhcccHH
Confidence 9987555311100 111111 12344555555778999999986665553311 233333333445677
Q ss_pred HHHHhccccCCCchhHH---HHHHHHHH
Q 022992 252 DVVKEFDSMTPLDPWKT---TLLLRVKE 276 (289)
Q Consensus 252 ~al~~~~~~~~~d~~~~---~~~~~~~~ 276 (289)
+|+..|+.+++-=|.+. .+++||.-
T Consensus 678 ka~d~yk~~hrkfpedldclkflvri~~ 705 (840)
T KOG2003|consen 678 KAFDLYKDIHRKFPEDLDCLKFLVRIAG 705 (840)
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHhc
Confidence 77777777766434444 44455543
No 55
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.00 E-value=1.2e-07 Score=80.56 Aligned_cols=211 Identities=15% Similarity=0.101 Sum_probs=146.8
Q ss_pred cchHhhHHHHHHHHH--------Hhhc-cCCCCC-CCHHHHHHHHHHHH-----------HHHHHcCCHHHHHHHHHHHH
Q 022992 2 GDQIARAEEFEKKAE--------KKLN-GWGLFG-SKYEDAADLFDKAA-----------NSFKLAKSWDKAGATYVKLA 60 (289)
Q Consensus 2 ~~~~~~a~~~~~~A~--------~~~k-~~~~~~-~~~~~A~~~~~~A~-----------~~~~~~g~~~~A~~~~~~a~ 60 (289)
|+++.+|.+++.+-- .++. |..|.+ |..|.|+......- .+....|+--.+.-.+.+|-
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 566777888877653 3333 322334 88999987655441 11222222223334455555
Q ss_pred HHHHhcCC-HHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022992 61 NCHLKLES-KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKA 138 (289)
Q Consensus 61 ~~~~~~~~-~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A 138 (289)
+++..+-+ +..+-.++..+..+|... ++++||+..++-..+-.+ ......|..+-.++..+....+.+.|+..+.+|
T Consensus 128 ~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q-~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ-TYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc-cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 55555444 455566888899999888 999999998876665432 344578899999999999889999999999999
Q ss_pred HHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHH
Q 022992 139 ADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALER 218 (289)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~ 218 (289)
++..+..- .+-..+|.+....|+|+.|++.++.+...... -.....-.+-.||...|+.......+.+
T Consensus 207 lqa~~~cv------RAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~------yl~evl~~L~~~Y~~lg~~~~~~~fL~~ 274 (389)
T COG2956 207 LQADKKCV------RASIILGRVELAKGDYQKAVEALERVLEQNPE------YLSEVLEMLYECYAQLGKPAEGLNFLRR 274 (389)
T ss_pred HhhCccce------ehhhhhhHHHHhccchHHHHHHHHHHHHhChH------HHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 98755421 23467899999999999999999999743211 1233344566799999999999999988
Q ss_pred HhhcCCC
Q 022992 219 YQDMDPT 225 (289)
Q Consensus 219 ~~~~~~~ 225 (289)
+.+..+.
T Consensus 275 ~~~~~~g 281 (389)
T COG2956 275 AMETNTG 281 (389)
T ss_pred HHHccCC
Confidence 8775544
No 56
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=3.7e-08 Score=89.03 Aligned_cols=215 Identities=11% Similarity=0.103 Sum_probs=154.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022992 40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI 118 (289)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~l 118 (289)
|..|...|.+++|..+|-||-.+-...| .+|...|..|--. +.++|+.+|..|..+++...-| ..-+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~fg------paWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP------~LYl 386 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPTFG------PAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP------SLYL 386 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCcccc------HHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch------HHHH
Confidence 5567778999999999999988754433 2555667777444 8899999999999999877663 4557
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHH
Q 022992 119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLN 198 (289)
Q Consensus 119 a~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 198 (289)
|.-|...++++-|-.+|.+|+.+.+.+. -+++.+|.+....+.|.+|..+|+.++............-.-.+.+
T Consensus 387 gmey~~t~n~kLAe~Ff~~A~ai~P~Dp------lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~N 460 (611)
T KOG1173|consen 387 GMEYMRTNNLKLAEKFFKQALAIAPSDP------LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNN 460 (611)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCcc------hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHh
Confidence 7888888999999999999999998754 4789999999999999999999999973322111111111234678
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-cccCHHHHHHHHHhccccCCCchhHHHHHHHHHHh
Q 022992 199 AGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASM-DEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEK 277 (289)
Q Consensus 199 ~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~-~~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~ 277 (289)
+|.++...+.+..|+..|++++.+.|...+ ....++-.+ ..|+ +..|+..|...--++|.++.+-.-++..
T Consensus 461 LGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~-----~~asig~iy~llgn---ld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 461 LGHAYRKLNKYEEAIDYYQKALLLSPKDAS-----THASIGYIYHLLGN---LDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCCCchh-----HHHHHHHHHHHhcC---hHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 999999999999999999999998888652 222333222 2343 4445555555555566665554445555
Q ss_pred ccc
Q 022992 278 LKA 280 (289)
Q Consensus 278 ~~~ 280 (289)
|..
T Consensus 533 ie~ 535 (611)
T KOG1173|consen 533 IED 535 (611)
T ss_pred HHh
Confidence 444
No 57
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.98 E-value=1.5e-08 Score=86.20 Aligned_cols=196 Identities=10% Similarity=0.058 Sum_probs=115.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 022992 38 KAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYK 116 (289)
Q Consensus 38 ~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~ 116 (289)
-...+|....++..|+..|-+.++.+. +....+...+.++... +.++|+++|+.++..-..+= .++.
T Consensus 261 lLskvY~ridQP~~AL~~~~~gld~fP------~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nv------EaiA 328 (478)
T KOG1129|consen 261 LLSKVYQRIDQPERALLVIGEGLDSFP------FDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINV------EAIA 328 (478)
T ss_pred HHHHHHHHhccHHHHHHHHhhhhhcCC------chhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccc------eeee
Confidence 334444444444444444444443322 1122333334444333 45555555555544422111 1233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHH
Q 022992 117 EIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHL 196 (289)
Q Consensus 117 ~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 196 (289)
-+|.-|..-++++-|+.+|++.+.+-.. ..+.+.++|-+....++++-++..|+++.....++ -.....|
T Consensus 329 cia~~yfY~~~PE~AlryYRRiLqmG~~------speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~----~~aaDvW 398 (478)
T KOG1129|consen 329 CIAVGYFYDNNPEMALRYYRRILQMGAQ------SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQP----GQAADVW 398 (478)
T ss_pred eeeeccccCCChHHHHHHHHHHHHhcCC------ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCc----chhhhhh
Confidence 3444455456677777777776665332 23678889988888899999999999987544322 2355678
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHH-HHcccCHHHHHHHHHhcccc
Q 022992 197 LNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAA-SMDEEDIAKFTDVVKEFDSM 260 (289)
Q Consensus 197 ~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~-a~~~~d~~~~~~al~~~~~~ 260 (289)
+++|.+....||+.-|..+|+-++.-++.++ ..+++|+. +...||.+..+..+....++
T Consensus 399 YNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~-----ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 399 YNLGFVAVTIGDFNLAKRCFRLALTSDAQHG-----EALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred hccceeEEeccchHHHHHHHHHHhccCcchH-----HHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 8888888888999999999988877655543 44666664 44678876666555554433
No 58
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.98 E-value=1.2e-08 Score=88.19 Aligned_cols=214 Identities=17% Similarity=0.245 Sum_probs=99.4
Q ss_pred HhhHHHHHHHHHHhh-c-c----CC-----CCC-CCHHHHHHHHHHHHHH-------------HHHcCCHHHHHHHHHHH
Q 022992 5 IARAEEFEKKAEKKL-N-G----WG-----LFG-SKYEDAADLFDKAANS-------------FKLAKSWDKAGATYVKL 59 (289)
Q Consensus 5 ~~~a~~~~~~A~~~~-k-~----~~-----~~~-~~~~~A~~~~~~A~~~-------------~~~~g~~~~A~~~~~~a 59 (289)
+++|.+.++++-... . . |. .|. +++++|...|.+.... +...+++++|+.+++++
T Consensus 24 ~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~~~~~~~A~~~~~~~ 103 (280)
T PF13429_consen 24 YEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQLLQDGDPEEALKLAEKA 103 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 677888885543333 1 1 11 123 7788888888776321 23456777777776665
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022992 60 ANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKA 138 (289)
Q Consensus 60 ~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A 138 (289)
.+-. ++ ...+..+..++... +++++.+.++++.. .........++...|.++...|++++|+..|++|
T Consensus 104 ~~~~---~~----~~~l~~~l~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 104 YERD---GD----PRYLLSALQLYYRLGDYDEAEELLEKLEE----LPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp ---------------------H-HHHTT-HHHHHHHHHHHHH-----T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred cccc---cc----cchhhHHHHHHHHHhHHHHHHHHHHHHHh----ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4332 22 23344455555554 88888888887663 2223456778999999999999999999999999
Q ss_pred HHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHH
Q 022992 139 ADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALER 218 (289)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~ 218 (289)
+++.+.+. .+...++.+++..|+++++.+.+.........++ ..+...+.++...|++.+|...|++
T Consensus 173 l~~~P~~~------~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~-------~~~~~la~~~~~lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 173 LELDPDDP------DARNALAWLLIDMGDYDEAREALKRLLKAAPDDP-------DLWDALAAAYLQLGRYEEALEYLEK 239 (280)
T ss_dssp HHH-TT-H------HHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSC-------CHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHcCCCCH------HHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHH-------HHHHHHHHHhccccccccccccccc
Confidence 99987643 4678899999999999998888877754332222 1334567888899999999999999
Q ss_pred HhhcCCCCCCchHHHHHHHHHHHHc-ccCH
Q 022992 219 YQDMDPTFSGTREYRLLSDIAASMD-EEDI 247 (289)
Q Consensus 219 ~~~~~~~~~~~~e~~~l~~l~~a~~-~~d~ 247 (289)
+....|. ...++..+++++. .|+.
T Consensus 240 ~~~~~p~-----d~~~~~~~a~~l~~~g~~ 264 (280)
T PF13429_consen 240 ALKLNPD-----DPLWLLAYADALEQAGRK 264 (280)
T ss_dssp HHHHSTT------HHHHHHHHHHHT-----
T ss_pred ccccccc-----cccccccccccccccccc
Confidence 8876554 2245566676664 4443
No 59
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.97 E-value=6.5e-08 Score=79.16 Aligned_cols=132 Identities=10% Similarity=0.139 Sum_probs=105.5
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHH-HHh
Q 022992 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYA-AEL 165 (289)
Q Consensus 87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~-~~~ 165 (289)
+.++++..+++++...+...+ .|..+|.++...|++++|+..|++|+.+.+.. ..++..+|.++ ...
T Consensus 54 ~~~~~i~~l~~~L~~~P~~~~------~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~------~~~~~~lA~aL~~~~ 121 (198)
T PRK10370 54 TPEAQLQALQDKIRANPQNSE------QWALLGEYYLWRNDYDNALLAYRQALQLRGEN------AELYAALATVLYYQA 121 (198)
T ss_pred hHHHHHHHHHHHHHHCCCCHH------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhc
Confidence 778899999999988776544 89999999999999999999999999997754 35788999875 677
Q ss_pred cC--HHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHH
Q 022992 166 EQ--YHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIA 239 (289)
Q Consensus 166 g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~ 239 (289)
|+ +++|.+.+++++..... ....++.+|.++...|++++|...+++++++.|.-. ....++..+-
T Consensus 122 g~~~~~~A~~~l~~al~~dP~-------~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~--~r~~~i~~i~ 188 (198)
T PRK10370 122 GQHMTPQTREMIDKALALDAN-------EVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV--NRTQLVESIN 188 (198)
T ss_pred CCCCcHHHHHHHHHHHHhCCC-------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc--cHHHHHHHHH
Confidence 87 59999999999855322 234567889999999999999999999998877633 2234444433
No 60
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=2.4e-07 Score=82.61 Aligned_cols=55 Identities=25% Similarity=0.351 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhc-cCCCCC-CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHH
Q 022992 8 AEEFEKKAEKKLN-GWGLFG-SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANC 62 (289)
Q Consensus 8 a~~~~~~A~~~~k-~~~~~~-~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~ 62 (289)
+++.++.|...=+ |+-+|+ ++|++|+++|.+| +.||...|+|++-++...+|+++
T Consensus 108 ~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl 178 (606)
T KOG0547|consen 108 KEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL 178 (606)
T ss_pred hHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 4556666655443 766776 9999999999999 56899999999999988888765
No 61
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=4.7e-08 Score=87.07 Aligned_cols=194 Identities=19% Similarity=0.219 Sum_probs=135.4
Q ss_pred HHHhhc-cCC-CCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022992 15 AEKKLN-GWG-LFGSKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVD 78 (289)
Q Consensus 15 A~~~~k-~~~-~~~~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~ 78 (289)
|+.++- |.| |.+||+..|-+.|+.+ +.+|....+..+-...|.+|.++-...-+ .|..
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d------vYyH 399 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPD------VYYH 399 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCc------hhHh
Confidence 444443 434 3346666666665555 45566677778888888888877544322 4445
Q ss_pred HHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHH
Q 022992 79 AAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQK 157 (289)
Q Consensus 79 ~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~ 157 (289)
-|.++.-+ ++++|+.=|++|+++.+. -+-.+..++-...+++.++++...|+.+..-|+.- +++++-
T Consensus 400 RgQm~flL~q~e~A~aDF~Kai~L~pe------~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~------~Evy~~ 467 (606)
T KOG0547|consen 400 RGQMRFLLQQYEEAIADFQKAISLDPE------NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC------PEVYNL 467 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcChh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------chHHHH
Confidence 56666555 889999999999988764 34467777777777789999999999999888753 478999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC
Q 022992 158 VAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTF 226 (289)
Q Consensus 158 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~ 226 (289)
.|.++..+++|++|++.|..++.........-.+..-...++.++..=.+|+.+|.+.++++++++|.-
T Consensus 468 fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkc 536 (606)
T KOG0547|consen 468 FAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKC 536 (606)
T ss_pred HHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchH
Confidence 999999999999999999999844322111111222122233233223489999999999999999874
No 62
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.95 E-value=1.3e-08 Score=87.95 Aligned_cols=172 Identities=15% Similarity=0.136 Sum_probs=102.2
Q ss_pred CCHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHH
Q 022992 27 SKYEDAADLFDKA-------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAI 92 (289)
Q Consensus 27 ~~~~~A~~~~~~A-------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~ 92 (289)
+++++|.+++.++ ..++...++++++...+.++.. ..........+...|.++.+. ++++|+
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEE----LPAAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-----T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHh----ccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 6666666655544 4567788999999988888663 222334567888889999776 999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHH
Q 022992 93 SCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSI 172 (289)
Q Consensus 93 ~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 172 (289)
.+|++|+...+.+.+ ++..++.++...|+++++.+.+.......+.+. ..+..+|.++..+|++++|+
T Consensus 167 ~~~~~al~~~P~~~~------~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~------~~~~~la~~~~~lg~~~~Al 234 (280)
T PF13429_consen 167 RDYRKALELDPDDPD------ARNALAWLLIDMGDYDEAREALKRLLKAAPDDP------DLWDALAAAYLQLGRYEEAL 234 (280)
T ss_dssp HHHHHHHHH-TT-HH------HHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSC------CHCHHHHHHHHHHT-HHHHH
T ss_pred HHHHHHHHcCCCCHH------HHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHH------HHHHHHHHHhcccccccccc
Confidence 999999999886554 777889999999999997777777766654433 25677899999999999999
Q ss_pred HHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022992 173 EIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQD 221 (289)
Q Consensus 173 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~ 221 (289)
.+|+++......+ ...+...+.++...|+.+.|.....++..
T Consensus 235 ~~~~~~~~~~p~d-------~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 235 EYLEKALKLNPDD-------PLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHSTT--------HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccc-------ccccccccccccccccccccccccccccc
Confidence 9999997543332 22345667888889999999888877654
No 63
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.94 E-value=3.7e-08 Score=94.47 Aligned_cols=168 Identities=14% Similarity=0.071 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHH
Q 022992 34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAA 112 (289)
Q Consensus 34 ~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a 112 (289)
+...++-.+....+....+....-++....+. +..-+.++.++|.+.... .+++|..+++.++++.++.-.
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~----- 121 (694)
T PRK15179 50 ELLQQARQVLERHAAVHKPAAALPELLDYVRR---YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSE----- 121 (694)
T ss_pred HHHHHHHHHHHHhhhhcchHhhHHHHHHHHHh---ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHH-----
Confidence 34444555555666666666666666666553 333377888899998777 999999999999999886554
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccch
Q 022992 113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGV 192 (289)
Q Consensus 113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 192 (289)
+..+++.++.+++++++|+..+++++...+.. +..+..+|.++..+|+|++|+.+|++++... + ..
T Consensus 122 -a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~------~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~---p----~~ 187 (694)
T PRK15179 122 -AFILMLRGVKRQQGIEAGRAEIELYFSGGSSS------AREILLEAKSWDEIGQSEQADACFERLSRQH---P----EF 187 (694)
T ss_pred -HHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC------HHHHHHHHHHHHHhcchHHHHHHHHHHHhcC---C----Cc
Confidence 89999999999999999999999999876653 3678999999999999999999999997421 1 23
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHHHhhcC
Q 022992 193 KGHLLNAGICQLCKGDVVAITNALERYQDMD 223 (289)
Q Consensus 193 ~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~ 223 (289)
...+.+.|.++...|+.++|..+|+++.+..
T Consensus 188 ~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 188 ENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 4567788888888999999999999987743
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=8.8e-09 Score=87.51 Aligned_cols=164 Identities=13% Similarity=0.098 Sum_probs=126.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022992 40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI 118 (289)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~l 118 (289)
++++...+++++|++.|..+++.... .-+ +..-+|.-|.-. +++-|+.+|++.+.+-...+. .+.||
T Consensus 297 ARi~eam~~~~~a~~lYk~vlk~~~~----nvE--aiAcia~~yfY~~~PE~AlryYRRiLqmG~~spe------Lf~Ni 364 (478)
T KOG1129|consen 297 ARIHEAMEQQEDALQLYKLVLKLHPI----NVE--AIACIAVGYFYDNNPEMALRYYRRILQMGAQSPE------LFCNI 364 (478)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCc----cce--eeeeeeeccccCCChHHHHHHHHHHHHhcCCChH------HHhhH
Confidence 45566667777777777766665321 111 111123334434 899999999999998776665 89999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHH
Q 022992 119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLN 198 (289)
Q Consensus 119 a~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 198 (289)
|.|...-+.+|-++..|++|+......+ .+++++.+||.+.+..|++.-|..+|+-++... -...+.+.+
T Consensus 365 gLCC~yaqQ~D~~L~sf~RAlstat~~~---~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-------~~h~ealnN 434 (478)
T KOG1129|consen 365 GLCCLYAQQIDLVLPSFQRALSTATQPG---QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-------AQHGEALNN 434 (478)
T ss_pred HHHHHhhcchhhhHHHHHHHHhhccCcc---hhhhhhhccceeEEeccchHHHHHHHHHHhccC-------cchHHHHHh
Confidence 9999988999999999999999876544 578999999999999999999999999886332 133456888
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992 199 AGICQLCKGDVVAITNALERYQDMDPT 225 (289)
Q Consensus 199 ~~~~~l~~gd~~~A~~~~~~~~~~~~~ 225 (289)
++......||.++|+..++.+.++.|.
T Consensus 435 LavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 435 LAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 988888899999999999998877665
No 65
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.91 E-value=2.9e-08 Score=77.08 Aligned_cols=109 Identities=9% Similarity=-0.032 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHH
Q 022992 54 ATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTI 132 (289)
Q Consensus 54 ~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~ 132 (289)
..+.+++++-.. . +...|.++... ++++|+.+|++++.+-+.. ..++..+|.++...|++++|+
T Consensus 14 ~~~~~al~~~p~-----~----~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~A~ 78 (144)
T PRK15359 14 DILKQLLSVDPE-----T----VYASGYASWQEGDYSRAVIDFSWLVMAQPWS------WRAHIALAGTWMMLKEYTTAI 78 (144)
T ss_pred HHHHHHHHcCHH-----H----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHHhhHHHHH
Confidence 355666666322 1 33456666544 9999999999999886654 458999999999999999999
Q ss_pred HHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 022992 133 VFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSL 183 (289)
Q Consensus 133 ~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 183 (289)
.+|++|+.+.+... ..+.++|.++..+|++++|+..|++++....
T Consensus 79 ~~y~~Al~l~p~~~------~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 79 NFYGHALMLDASHP------EPVYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred HHHHHHHhcCCCCc------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999866543 5789999999999999999999999986543
No 66
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.90 E-value=1.1e-07 Score=73.45 Aligned_cols=103 Identities=11% Similarity=0.051 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccc
Q 022992 109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLL 188 (289)
Q Consensus 109 ~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 188 (289)
...-..+..+|-.+...|++++|...|+-.+.+.+. ....+.+||.++..+|+|++|+..|.+++...+++
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~------~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd--- 102 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW------SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA--- 102 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---
Confidence 344456777888888889999999999999887654 34688999999999999999999999998554333
Q ss_pred ccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCC
Q 022992 189 KYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDP 224 (289)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~ 224 (289)
...++++|.|++..|+.+.|+++|+.++....
T Consensus 103 ----p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 103 ----PQAPWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred ----chHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 23568899999999999999999999987663
No 67
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.88 E-value=1.2e-07 Score=93.01 Aligned_cols=202 Identities=14% Similarity=0.091 Sum_probs=126.8
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 022992 44 KLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELY 122 (289)
Q Consensus 44 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~ 122 (289)
...|++++|+..|++++..... .+.. +..+ +|.+|... ++++|+.+|++++..-+.. ..........++..+
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~--~P~~-a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~--~~~~~~~~~~L~~a~ 320 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQI--IPPW-AQRW--VASAYLKLHQPEKAQSILTELFYHPETI--ADLSDEELADLFYSL 320 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCC--CCHH-HHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCC--CCCChHHHHHHHHHH
Confidence 4568888888888887655211 1111 2222 36666555 8888888888887654322 111223455666666
Q ss_pred HhcCCHHHHHHHHHHHHHHHhcc--------Cccc-hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchh
Q 022992 123 ESEHNIEQTIVFFEKAADMFQNE--------EVTT-SANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK 193 (289)
Q Consensus 123 ~~~g~~~~A~~~y~~A~~~~~~~--------~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 193 (289)
...|++++|+.+++++....+.. ..+. ....++..++.++...|++++|++.+++++...+++ .
T Consensus 321 ~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n-------~ 393 (765)
T PRK10049 321 LESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGN-------Q 393 (765)
T ss_pred HhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------H
Confidence 77788888888888888775421 1111 233466778888888888888888888886443222 2
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHH-HHHcccCHHHHHHHHHhccccCCCc
Q 022992 194 GHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIA-ASMDEEDIAKFTDVVKEFDSMTPLD 264 (289)
Q Consensus 194 ~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~-~a~~~~d~~~~~~al~~~~~~~~~d 264 (289)
..+...+.++...|++.+|...+++++.+.|..... ...++ .+...++.+.....++......+-+
T Consensus 394 ~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l-----~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~ 460 (765)
T PRK10049 394 GLRIDYASVLQARGWPRAAENELKKAEVLEPRNINL-----EVEQAWTALDLQEWRQMDVLTDDVVAREPQD 460 (765)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 345667777778888888888888888888877521 22222 3345667766666666655555444
No 68
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.81 E-value=2.4e-06 Score=83.96 Aligned_cols=185 Identities=9% Similarity=-0.008 Sum_probs=138.4
Q ss_pred CCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHH
Q 022992 27 SKYEDAADLFDKA---------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNE 90 (289)
Q Consensus 27 ~~~~~A~~~~~~A---------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~ 90 (289)
+++++|+..|.++ +.+|...|++++|...|.+++.... .+..........++.++.+. ++++
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p--~~~~~~~~~~~~L~~a~~~~g~~~e 328 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPE--TIADLSDEELADLFYSLLESENYPG 328 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCC--CCCCCChHHHHHHHHHHHhcccHHH
Confidence 6788888877776 3467788999999999998775321 11111123455666666555 9999
Q ss_pred HHHHHHHHHHHHHhcCCHH---------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHH
Q 022992 91 AISCLEQAVNMFCDIGRLS---------MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQY 161 (289)
Q Consensus 91 A~~~~~~A~~~~~~~g~~~---------~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~ 161 (289)
|+.+++++....+..-... .....+..+|.++...|++++|+..+++++...+. ....+..+|.+
T Consensus 329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~------n~~l~~~lA~l 402 (765)
T PRK10049 329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG------NQGLRIDYASV 402 (765)
T ss_pred HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHH
Confidence 9999998876654432222 12457788999999999999999999999987543 25789999999
Q ss_pred HHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC
Q 022992 162 AAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTF 226 (289)
Q Consensus 162 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~ 226 (289)
+...|++++|++.+++++...+++ ...+...+.+++..|++.+|...+++.++..|.-
T Consensus 403 ~~~~g~~~~A~~~l~~al~l~Pd~-------~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~ 460 (765)
T PRK10049 403 LQARGWPRAAENELKKAEVLEPRN-------INLEVEQAWTALDLQEWRQMDVLTDDVVAREPQD 460 (765)
T ss_pred HHhcCCHHHHHHHHHHHHhhCCCC-------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999998554222 2245566788899999999999999998866553
No 69
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.80 E-value=1.2e-06 Score=68.02 Aligned_cols=136 Identities=17% Similarity=0.146 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCC
Q 022992 29 YEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR 107 (289)
Q Consensus 29 ~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~ 107 (289)
-.+|...|..+...+. .+++..+...+.+...-+. +..-+..+...+|.++... ++++|+..|++++.-. .+
T Consensus 8 ~~~a~~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~---~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d 80 (145)
T PF09976_consen 8 AEQASALYEQALQALQ-AGDPAKAEAAAEQLAKDYP---SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA---PD 80 (145)
T ss_pred HHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCC---CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CC
Confidence 3567778888877774 7888888776666665433 3334455666677777655 9999999999998843 45
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 022992 108 LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI 178 (289)
Q Consensus 108 ~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 178 (289)
+.....+...+|.++...|++++|+..++.. ......+.+....|+++...|++++|+..|+++
T Consensus 81 ~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 81 PELKPLARLRLARILLQQGQYDEALATLQQI-------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 5666778889999999999999999999651 223345567889999999999999999999986
No 70
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.8e-07 Score=81.79 Aligned_cols=154 Identities=14% Similarity=0.146 Sum_probs=96.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCcc------chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccc
Q 022992 115 YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT------TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLL 188 (289)
Q Consensus 115 l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 188 (289)
+.--|.++....+.+.|+.+|++++.+.+.-... ...-..+..-|.-..+.|+|..|.++|.+++...+.+
T Consensus 206 l~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n--- 282 (486)
T KOG0550|consen 206 LYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN--- 282 (486)
T ss_pred HHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc---
Confidence 3334555555578888888888888876643221 2222344555666778888888888888887443322
Q ss_pred ccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHH-HHHcccCHHHHHHHHHhccccCCCc--h
Q 022992 189 KYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIA-ASMDEEDIAKFTDVVKEFDSMTPLD--P 265 (289)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~-~a~~~~d~~~~~~al~~~~~~~~~d--~ 265 (289)
.-.....|.+.+.+....|...+|+..-+.++.+++++. ..++ .+-+.-+++.|+.|+++|....+++ +
T Consensus 283 ~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syi--------kall~ra~c~l~le~~e~AV~d~~~a~q~~~s~ 354 (486)
T KOG0550|consen 283 KKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYI--------KALLRRANCHLALEKWEEAVEDYEKAMQLEKDC 354 (486)
T ss_pred cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 112334566677777788888888888888888776652 2222 2334456778888888888776654 3
Q ss_pred hHHHHHHHHHHhcc
Q 022992 266 WKTTLLLRVKEKLK 279 (289)
Q Consensus 266 ~~~~~~~~~~~~~~ 279 (289)
....+|.+.+..|.
T Consensus 355 e~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 355 EIRRTLREAQLALK 368 (486)
T ss_pred chHHHHHHHHHHHH
Confidence 34455555555544
No 71
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.76 E-value=2.3e-05 Score=74.85 Aligned_cols=96 Identities=11% Similarity=0.155 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCch
Q 022992 151 ANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTR 230 (289)
Q Consensus 151 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~ 230 (289)
....+..++..+...|.|.+|+.+|..+.... .++....|.++|.|+...|.++.|..+|++++.+.|...+.+
T Consensus 413 ~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~------~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~R 486 (895)
T KOG2076|consen 413 DVDLYLDLADALTNIGKYKEALRLLSPITNRE------GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDAR 486 (895)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc------cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhh
Confidence 34567788888889999999999999886332 334466789999999999999999999999999888764332
Q ss_pred HHHHHHHHHHHHcccCHHHHHHHHHh
Q 022992 231 EYRLLSDIAASMDEEDIAKFTDVVKE 256 (289)
Q Consensus 231 e~~~l~~l~~a~~~~d~~~~~~al~~ 256 (289)
..|..|.. ..|+.++.-+++..
T Consensus 487 --i~Lasl~~--~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 487 --ITLASLYQ--QLGNHEKALETLEQ 508 (895)
T ss_pred --hhHHHHHH--hcCCHHHHHHHHhc
Confidence 22222222 36666655555544
No 72
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.73 E-value=1.7e-07 Score=76.71 Aligned_cols=118 Identities=14% Similarity=0.146 Sum_probs=97.6
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-H
Q 022992 46 AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELY-E 123 (289)
Q Consensus 46 ~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~-~ 123 (289)
.++.++++..+.+++...... +..+..+|.+|... ++++|+.+|++|+.+.++..+ .+..+|.++ .
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~------~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~------~~~~lA~aL~~ 119 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQN------SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAE------LYAALATVLYY 119 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH
Confidence 456677788887777764322 55888999999777 999999999999999876554 889999874 6
Q ss_pred hcCC--HHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992 124 SEHN--IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ 181 (289)
Q Consensus 124 ~~g~--~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 181 (289)
..|+ +++|...++++++..+... .++..+|.++...|+|++|+.+|++++..
T Consensus 120 ~~g~~~~~~A~~~l~~al~~dP~~~------~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 120 QAGQHMTPQTREMIDKALALDANEV------TALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred hcCCCCcHHHHHHHHHHHHhCCCCh------hHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6677 5999999999999877643 58899999999999999999999999744
No 73
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.69 E-value=2.6e-07 Score=70.58 Aligned_cols=103 Identities=15% Similarity=0.135 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccc
Q 022992 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG 191 (289)
Q Consensus 112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 191 (289)
......+|..+...|++++|+.+|++++.+.+.. ..++..+|.++...|++++|+.+|++++.... .
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-------~ 83 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN------SRYWLGLAACCQMLKEYEEAIDAYALAAALDP-------D 83 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------C
Confidence 3467888899988899999999999998876542 35788999999999999999999998864321 1
Q ss_pred hhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992 192 VKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS 227 (289)
Q Consensus 192 ~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~ 227 (289)
....++.+|.++...|++..|...|++++++.|...
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 119 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENP 119 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 233456788899999999999999999988876543
No 74
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.69 E-value=9e-07 Score=78.89 Aligned_cols=168 Identities=11% Similarity=-0.061 Sum_probs=112.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022992 39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKE 117 (289)
Q Consensus 39 A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~ 117 (289)
-+.++...|++++|...++++++.... +. ..+.. +..+... ++..+.....+++.. ...........+..
T Consensus 49 ~a~~~~~~g~~~~A~~~~~~~l~~~P~--~~----~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~ 119 (355)
T cd05804 49 EALSAWIAGDLPKALALLEQLLDDYPR--DL----LALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGM 119 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC--cH----HHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHH
Confidence 355667789999999999999877432 11 11111 2222111 222222333333333 23344455667788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHH
Q 022992 118 IAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLL 197 (289)
Q Consensus 118 la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 197 (289)
+|.++...|++++|+..+++++++.+.. ..++..+|.++...|++++|+.++++++.....++ . .....+.
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~p~~------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~--~-~~~~~~~ 190 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELNPDD------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSS--M-LRGHNWW 190 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCC------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCc--c-hhHHHHH
Confidence 8999999999999999999999987654 24678899999999999999999999874322111 1 1112345
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhcCC
Q 022992 198 NAGICQLCKGDVVAITNALERYQDMDP 224 (289)
Q Consensus 198 ~~~~~~l~~gd~~~A~~~~~~~~~~~~ 224 (289)
.++.+++..|++++|...+++.....+
T Consensus 191 ~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 191 HLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 678889999999999999998765443
No 75
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.69 E-value=9.1e-07 Score=80.42 Aligned_cols=192 Identities=13% Similarity=0.125 Sum_probs=137.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022992 40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI 118 (289)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~l 118 (289)
|..+...|+..+|+-+|+.|+.- + .+-+.+|..+|.+..+. +-..||..+++++++-+.+-. ++..|
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkq-----d-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nle------aLmaL 359 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQ-----D-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLE------ALMAL 359 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhh-----C-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHH------HHHHH
Confidence 44556678899999999988754 2 23477899999999877 668899999999999876554 88888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhc---------cCc----------------------------cchHHHHHHHHHHH
Q 022992 119 AELYESEHNIEQTIVFFEKAADMFQN---------EEV----------------------------TTSANQCKQKVAQY 161 (289)
Q Consensus 119 a~~~~~~g~~~~A~~~y~~A~~~~~~---------~~~----------------------------~~~~~~~~~~l~~~ 161 (289)
|..|...|.-.+|+.++.+=+..... .+. ...-+++..-||.+
T Consensus 360 AVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVL 439 (579)
T KOG1125|consen 360 AVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVL 439 (579)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHH
Confidence 99998888888888877776543310 000 01223567778889
Q ss_pred HHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHH
Q 022992 162 AAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAAS 241 (289)
Q Consensus 162 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a 241 (289)
|...|+|++|+.+|+.++...+. -...|.++|.+..-.....+|+.+|++++++.|.|.+.+ .+|+..
T Consensus 440 y~ls~efdraiDcf~~AL~v~Pn-------d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~R-----yNlgIS 507 (579)
T KOG1125|consen 440 YNLSGEFDRAVDCFEAALQVKPN-------DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVR-----YNLGIS 507 (579)
T ss_pred HhcchHHHHHHHHHHHHHhcCCc-------hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeee-----hhhhhh
Confidence 99999999999999999844322 123577888775544578899999999999999998654 334444
Q ss_pred HcccCHHHHHHHHHhc
Q 022992 242 MDEEDIAKFTDVVKEF 257 (289)
Q Consensus 242 ~~~~d~~~~~~al~~~ 257 (289)
|- ++..|++|++.|
T Consensus 508 ~m--NlG~ykEA~~hl 521 (579)
T KOG1125|consen 508 CM--NLGAYKEAVKHL 521 (579)
T ss_pred hh--hhhhHHHHHHHH
Confidence 42 234444444443
No 76
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.68 E-value=5.5e-07 Score=71.72 Aligned_cols=109 Identities=11% Similarity=0.029 Sum_probs=82.2
Q ss_pred CHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q 022992 68 SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE 146 (289)
Q Consensus 68 ~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~ 146 (289)
.....+.++..+|.++... ++++|+.+|++|+.+.. ++...+.++.++|.++...|++++|+.+|++|+.+.+..+
T Consensus 30 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~---~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~ 106 (168)
T CHL00033 30 SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI---DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLP 106 (168)
T ss_pred chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc---cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence 3445677888889998766 99999999999998853 3344567899999999999999999999999999865443
Q ss_pred cc-chHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992 147 VT-TSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (289)
Q Consensus 147 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 179 (289)
.. ...+.++..+|.++..+|++++|+..|.++.
T Consensus 107 ~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 107 QALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 21 2223344444444558889888888877775
No 77
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.67 E-value=4.1e-07 Score=87.40 Aligned_cols=157 Identities=12% Similarity=0.049 Sum_probs=123.9
Q ss_pred hHHHHHHHHHHhhccCCC-CC------------CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHH
Q 022992 7 RAEEFEKKAEKKLNGWGL-FG------------SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAA 73 (289)
Q Consensus 7 ~a~~~~~~A~~~~k~~~~-~~------------~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa 73 (289)
-+.+++++++..+...+. -+ -+|-.=.+.+...+.+....|++++|...++.++++.... .
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~------~ 120 (694)
T PRK15179 47 AGRELLQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS------S 120 (694)
T ss_pred HHHHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc------H
Confidence 347889999998873211 11 1333334555666888889999999999999999986532 4
Q ss_pred HHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHH
Q 022992 74 QAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSAN 152 (289)
Q Consensus 74 ~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~ 152 (289)
.+..+.+.+..+. ++++|+..+++++..-+.+- ..+..+|.++...|++++|+.+|++++.-.+ ...
T Consensus 121 ~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~------~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p------~~~ 188 (694)
T PRK15179 121 EAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSA------REILLEAKSWDEIGQSEQADACFERLSRQHP------EFE 188 (694)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCH------HHHHHHHHHHHHhcchHHHHHHHHHHHhcCC------CcH
Confidence 4666677777666 99999999999999877654 4899999999999999999999999997322 123
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992 153 QCKQKVAQYAAELEQYHKSIEIYEEIARQ 181 (289)
Q Consensus 153 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 181 (289)
.++.++|.++...|+.++|...|++++..
T Consensus 189 ~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 189 NGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 68899999999999999999999999744
No 78
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.64 E-value=2e-06 Score=66.80 Aligned_cols=134 Identities=15% Similarity=0.112 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHH
Q 022992 73 AQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSAN 152 (289)
Q Consensus 73 a~~~~~~a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~ 152 (289)
+..|..+-..+...++..+...+++-..- .++..-.......+|.++...|++++|+..|+++++.. .++....
T Consensus 12 ~~~y~~~~~~~~~~~~~~~~~~~~~l~~~---~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d~~l~~ 85 (145)
T PF09976_consen 12 SALYEQALQALQAGDPAKAEAAAEQLAKD---YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA---PDPELKP 85 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCHHHHH
Confidence 33444444444433555554444444333 33334556778889999999999999999999999854 2334455
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHh
Q 022992 153 QCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (289)
Q Consensus 153 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~ 220 (289)
.+..+++.++...|+|++|+..++.+. ++ .+ ........|.+++..|+.++|+..|+.++
T Consensus 86 ~a~l~LA~~~~~~~~~d~Al~~L~~~~-----~~--~~-~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 86 LARLRLARILLQQGQYDEALATLQQIP-----DE--AF-KALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcc-----Cc--ch-HHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 678899999999999999999997642 11 11 12234457999999999999999998763
No 79
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.64 E-value=1.1e-06 Score=69.94 Aligned_cols=113 Identities=13% Similarity=0.096 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCC-
Q 022992 30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR- 107 (289)
Q Consensus 30 ~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~- 107 (289)
+..+.++...|.++...|++++|...|.+++.+.. ++...+.++.++|.++... ++++|+.+|++|+.+.+..+.
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~---~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~ 108 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI---DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQA 108 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc---cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH
Confidence 45567778889999999999999999999998843 3334466899999999887 999999999999998665432
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 022992 108 LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE 145 (289)
Q Consensus 108 ~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~ 145 (289)
....+.++.++|..+...|+++.|+..|.+|+.+++..
T Consensus 109 ~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a 146 (168)
T CHL00033 109 LNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQA 146 (168)
T ss_pred HHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 22344555555555558899998888888888887653
No 80
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.64 E-value=5.3e-07 Score=76.05 Aligned_cols=103 Identities=13% Similarity=0.138 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccc
Q 022992 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG 191 (289)
Q Consensus 112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 191 (289)
|..+..=|.-+.+.++|.+|+..|.+|+++.+.+. ..|.+-+.+|.++|.|+.|++-++.++... + .
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA------VyycNRAAAy~~Lg~~~~AVkDce~Al~iD--p-----~ 147 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNA------VYYCNRAAAYSKLGEYEDAVKDCESALSID--P-----H 147 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc------hHHHHHHHHHHHhcchHHHHHHHHHHHhcC--h-----H
Confidence 44455555555555777777777777777665432 345666667777777777777777665331 1 1
Q ss_pred hhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992 192 VKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS 227 (289)
Q Consensus 192 ~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~ 227 (289)
-...|.++|++|+.+|++..|.+.|.++++++|...
T Consensus 148 yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 148 YSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence 123456667777777777777777777777666543
No 81
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.63 E-value=2.4e-06 Score=68.28 Aligned_cols=106 Identities=12% Similarity=0.206 Sum_probs=80.4
Q ss_pred hcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 022992 65 KLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ 143 (289)
Q Consensus 65 ~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~ 143 (289)
........+.++.+.|.++... ++++|+.+|++++.+.+... ..+.++.++|.++...|++++|+.+|++++.+.+
T Consensus 27 ~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 103 (172)
T PRK02603 27 PINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN---DRSYILYNMGIIYASNGEHDKALEYYHQALELNP 103 (172)
T ss_pred ccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 3345567788899999999776 99999999999998865432 2467899999999999999999999999999865
Q ss_pred ccCccchHHHHHHHHHHHHHHhcC-------HHHHHHHHHHHH
Q 022992 144 NEEVTTSANQCKQKVAQYAAELEQ-------YHKSIEIYEEIA 179 (289)
Q Consensus 144 ~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~a~ 179 (289)
.. ...+..+|.++...|+ ++.|+..|+++.
T Consensus 104 ~~------~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~ 140 (172)
T PRK02603 104 KQ------PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAA 140 (172)
T ss_pred cc------HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHH
Confidence 43 2455667777766655 455555554443
No 82
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.63 E-value=1.5e-06 Score=67.26 Aligned_cols=97 Identities=12% Similarity=0.089 Sum_probs=82.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHH
Q 022992 74 QAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQ 153 (289)
Q Consensus 74 ~~~~~~a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~ 153 (289)
..|.-+...|..+++++|...|+-.+.+-+.+ +..+.++|.+++..|++++||..|.+|+.+.+.+. .
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~------~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp------~ 104 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS------FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP------Q 104 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc------h
Confidence 34444555566669999999999999887644 45999999999999999999999999999876443 5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992 154 CKQKVAQYAAELEQYHKSIEIYEEIARQS 182 (289)
Q Consensus 154 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 182 (289)
.+.++|.++...|+.+.|.+.|+.++..+
T Consensus 105 ~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 105 APWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 78999999999999999999999998665
No 83
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.62 E-value=1.1e-06 Score=65.20 Aligned_cols=107 Identities=13% Similarity=0.139 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccc
Q 022992 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG 191 (289)
Q Consensus 112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 191 (289)
++.+..+|..+...|++++|+..|.+++..++... ....++..+|.++...|++++|+.+|+++.......+ .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~----~ 74 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKST---YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP----K 74 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc---ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC----c
Confidence 35778889999999999999999999988765322 2345778899999999999999999999875432221 1
Q ss_pred hhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992 192 VKGHLLNAGICQLCKGDVVAITNALERYQDMDPT 225 (289)
Q Consensus 192 ~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~ 225 (289)
....+..++.++...|+..+|...++++....|.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 75 APDALLKLGMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred ccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 2234677888889999999999999998876655
No 84
>PLN02789 farnesyltranstransferase
Probab=98.62 E-value=6.9e-06 Score=72.09 Aligned_cols=175 Identities=9% Similarity=0.029 Sum_probs=129.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHH
Q 022992 25 FGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT--SSNEAISCLEQAVNMF 102 (289)
Q Consensus 25 ~~~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~--~~~~A~~~~~~A~~~~ 102 (289)
.+++|.+|..+|..+ +...+..++|+..+.+++.+.... ..++..-+.++... ++++++.++.+++...
T Consensus 32 y~~~~~~a~~~~ra~---l~~~e~serAL~lt~~aI~lnP~~------ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n 102 (320)
T PLN02789 32 YTPEFREAMDYFRAV---YASDERSPRALDLTADVIRLNPGN------YTVWHFRRLCLEALDADLEEELDFAEDVAEDN 102 (320)
T ss_pred eCHHHHHHHHHHHHH---HHcCCCCHHHHHHHHHHHHHCchh------HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC
Confidence 347899999888876 566788999999999999884321 34555566666555 6899999999999988
Q ss_pred HhcCCHHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992 103 CDIGRLSMAARYYKEIAELYESEHNI--EQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180 (289)
Q Consensus 103 ~~~g~~~~~a~~l~~la~~~~~~g~~--~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 180 (289)
+++-. ++...+.++...|+. ++++.++.+++++.+++- .++...+.++..+|+|++|++++.+++.
T Consensus 103 pknyq------aW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy------~AW~~R~w~l~~l~~~~eeL~~~~~~I~ 170 (320)
T PLN02789 103 PKNYQ------IWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNY------HAWSHRQWVLRTLGGWEDELEYCHQLLE 170 (320)
T ss_pred CcchH------HhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccH------HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 77665 788888888888774 788999999998876542 5889999999999999999999999986
Q ss_pred HHhhccccccchhhHHHHHHHHHHcc---CC----HHHHHHHHHHHhhcCCCCC
Q 022992 181 QSLNNNLLKYGVKGHLLNAGICQLCK---GD----VVAITNALERYQDMDPTFS 227 (289)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~l~~---gd----~~~A~~~~~~~~~~~~~~~ 227 (289)
....+ ..++...+.+.... |. .+++.....+++.+.|...
T Consensus 171 ~d~~N-------~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~ 217 (320)
T PLN02789 171 EDVRN-------NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNE 217 (320)
T ss_pred HCCCc-------hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCc
Confidence 54332 22344444443332 22 2356677777888887754
No 85
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.62 E-value=5.5e-07 Score=62.67 Aligned_cols=98 Identities=19% Similarity=0.317 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchh
Q 022992 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK 193 (289)
Q Consensus 114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 193 (289)
++.++|.++...|++++|+.+++++++..+... .++..+|.++...|++++|+++|+++....... .
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~ 68 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA------DAYYNLAAAYYKLGKYEEALEDYEKALELDPDN-------A 68 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-------h
Confidence 567888888888999999999999988765432 577889999999999999999999887432111 1
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHhhcCC
Q 022992 194 GHLLNAGICQLCKGDVVAITNALERYQDMDP 224 (289)
Q Consensus 194 ~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~ 224 (289)
..+..++.++...|++..|...+.......|
T Consensus 69 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 69 KAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 3456778888889999999999888776554
No 86
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.61 E-value=1.3e-05 Score=67.64 Aligned_cols=177 Identities=13% Similarity=0.071 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHH
Q 022992 31 DAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLS 109 (289)
Q Consensus 31 ~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~ 109 (289)
.+...|..+-..+ ..|++++|+..|++....+... ..+..+...+|.+|.+. ++++|+.++++.+..++...+
T Consensus 31 ~~~~~Y~~A~~~~-~~g~y~~Ai~~f~~l~~~yP~s---~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~-- 104 (243)
T PRK10866 31 PPSEIYATAQQKL-QDGNWKQAITQLEALDNRYPFG---PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-- 104 (243)
T ss_pred CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc--
Confidence 4555677666664 5799999999999999987633 34445677889998777 999999999999999998765
Q ss_pred HHHHHHHHHHHHHHhcC---------------C---HHHHHHHHHHHHHHHhccCccchH-----------HHHHHHHHH
Q 022992 110 MAARYYKEIAELYESEH---------------N---IEQTIVFFEKAADMFQNEEVTTSA-----------NQCKQKVAQ 160 (289)
Q Consensus 110 ~~a~~l~~la~~~~~~g---------------~---~~~A~~~y~~A~~~~~~~~~~~~~-----------~~~~~~l~~ 160 (289)
+..++..+|.++...+ | ..+|+..|++-++.|+...-...+ +.--..+|.
T Consensus 105 -~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~ 183 (243)
T PRK10866 105 -IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAE 183 (243)
T ss_pred -hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777653332 1 357889999999999876533222 122235667
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHH
Q 022992 161 YAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALER 218 (289)
Q Consensus 161 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~ 218 (289)
.|.+.|.|.-|+.-++.++...++.+ ...+++..++..+...|..+.|......
T Consensus 184 ~Y~~~~~y~AA~~r~~~v~~~Yp~t~----~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 184 YYTKRGAYVAVVNRVEQMLRDYPDTQ----ATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHcCchHHHHHHHHHHHHHCCCCc----hHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 88899999999999999986654432 2445677778888889999888777654
No 87
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.60 E-value=1.1e-05 Score=79.00 Aligned_cols=196 Identities=12% Similarity=0.036 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHH
Q 022992 34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAA 112 (289)
Q Consensus 34 ~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a 112 (289)
..|.+ +.+....|+++.|++.|.++++..... ....+ .++.++... +.++|+.++++++ .+.+. ..
T Consensus 36 ~~y~~-aii~~r~Gd~~~Al~~L~qaL~~~P~~-----~~av~-dll~l~~~~G~~~~A~~~~eka~--~p~n~----~~ 102 (822)
T PRK14574 36 TQYDS-LIIRARAGDTAPVLDYLQEESKAGPLQ-----SGQVD-DWLQIAGWAGRDQEVIDVYERYQ--SSMNI----SS 102 (822)
T ss_pred HHHHH-HHHHHhCCCHHHHHHHHHHHHhhCccc-----hhhHH-HHHHHHHHcCCcHHHHHHHHHhc--cCCCC----CH
Confidence 34444 444557799999999999999885532 11112 555555444 8999999999998 22222 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccch
Q 022992 113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGV 192 (289)
Q Consensus 113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 192 (289)
..+..+|.++...|++++|++.|+++++..+... .++..++.++...+++++|++.++++...... .
T Consensus 103 ~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~------~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~-------~ 169 (822)
T PRK14574 103 RGLASAARAYRNEKRWDQALALWQSSLKKDPTNP------DLISGMIMTQADAGRGGVVLKQATELAERDPT-------V 169 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc-------h
Confidence 4555668899999999999999999999877652 45667789999999999999999998633211 1
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-cccCHHHHHHHHHhccccC
Q 022992 193 KGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASM-DEEDIAKFTDVVKEFDSMT 261 (289)
Q Consensus 193 ~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~-~~~d~~~~~~al~~~~~~~ 261 (289)
. .+...+.++...++..+|...+++.++..|... + .+..+..+. ..|-.....+.++.++.+-
T Consensus 170 ~-~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~---e--~~~~~~~~l~~~~~~~~a~~l~~~~p~~f 233 (822)
T PRK14574 170 Q-NYMTLSYLNRATDRNYDALQASSEAVRLAPTSE---E--VLKNHLEILQRNRIVEPALRLAKENPNLV 233 (822)
T ss_pred H-HHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCH---H--HHHHHHHHHHHcCCcHHHHHHHHhCcccc
Confidence 1 112223333335666668999999888776643 2 233333333 3444445555566555443
No 88
>PLN02789 farnesyltranstransferase
Probab=98.59 E-value=2.2e-05 Score=69.01 Aligned_cols=223 Identities=9% Similarity=-0.023 Sum_probs=143.2
Q ss_pred CCHHHHHHHHHHH--------------HHHHHHcC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-C--H
Q 022992 27 SKYEDAADLFDKA--------------ANSFKLAK-SWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-S--S 88 (289)
Q Consensus 27 ~~~~~A~~~~~~A--------------~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~--~ 88 (289)
+.++.|...+.++ +.++...| ++++++.++.+++....+. ..++..-+.++... + .
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn------yqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN------YQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc------hHHhHHHHHHHHHcCchhh
Confidence 4666777777666 23455566 6789999999998875432 22344445455443 2 3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHh---
Q 022992 89 NEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL--- 165 (289)
Q Consensus 89 ~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 165 (289)
+++++++.+++++.+++-. ++...+.++...|+++++++++.+++++...+. .+++..+.++..+
T Consensus 125 ~~el~~~~kal~~dpkNy~------AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~------sAW~~R~~vl~~~~~l 192 (320)
T PLN02789 125 NKELEFTRKILSLDAKNYH------AWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNN------SAWNQRYFVITRSPLL 192 (320)
T ss_pred HHHHHHHHHHHHhCcccHH------HHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCch------hHHHHHHHHHHhcccc
Confidence 7889999999998876655 899999999999999999999999999876554 4677777776655
Q ss_pred cCH----HHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHc----cCCHHHHHHHHHHHhhcCCCCCCchHHHHHHH
Q 022992 166 EQY----HKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC----KGDVVAITNALERYQDMDPTFSGTREYRLLSD 237 (289)
Q Consensus 166 g~~----~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~----~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~ 237 (289)
|.+ ++++.+..+++...+.+. ..+...+.++.. .+...++...+.++....+. +. ..+.-
T Consensus 193 ~~~~~~~e~el~y~~~aI~~~P~N~-------SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~---s~--~al~~ 260 (320)
T PLN02789 193 GGLEAMRDSELKYTIDAILANPRNE-------SPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN---HV--FALSD 260 (320)
T ss_pred ccccccHHHHHHHHHHHHHhCCCCc-------CHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC---cH--HHHHH
Confidence 333 467888878875543321 233434333333 23345577777665553332 22 33555
Q ss_pred HHHHHcccC----------------HHHHHHHHHhccccCCCchhHHHHHHHHHHhcc
Q 022992 238 IAASMDEED----------------IAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLK 279 (289)
Q Consensus 238 l~~a~~~~d----------------~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~~~ 279 (289)
|++.+..+. ......|++-+..+...||.=.+-|.-.+..|+
T Consensus 261 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~~~~~~~~ 318 (320)
T PLN02789 261 LLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYWAWRKSKLP 318 (320)
T ss_pred HHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHHHHHHHhhc
Confidence 555554321 113466777777777778877777766555543
No 89
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.58 E-value=1.8e-05 Score=70.50 Aligned_cols=202 Identities=13% Similarity=-0.030 Sum_probs=128.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 022992 36 FDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYY 115 (289)
Q Consensus 36 ~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l 115 (289)
+.-.+.++...|+++.+...+.++.......-+..+. .+..+...+...++++|..+++++++..+... ..+
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~--~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~------~a~ 80 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERER--AHVEALSAWIAGDLPKALALLEQLLDDYPRDL------LAL 80 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH------HHH
Confidence 3344577778899999999999988877643332222 22333333445599999999999998865432 122
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhH
Q 022992 116 KEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGH 195 (289)
Q Consensus 116 ~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 195 (289)
.. +..+...|++..+.....+++.. ..........++..+|.++...|++++|+..+++++.....+ ...
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~-------~~~ 150 (355)
T cd05804 81 KL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD-------AWA 150 (355)
T ss_pred HH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------cHH
Confidence 22 44444445555555555555554 222333445567789999999999999999999998553222 234
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-cccCHHHHHHHHHh
Q 022992 196 LLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASM-DEEDIAKFTDVVKE 256 (289)
Q Consensus 196 ~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~-~~~d~~~~~~al~~ 256 (289)
+..++.++...|++++|...+++.+...+.-. .........++..+ ..|+.+.....++.
T Consensus 151 ~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~-~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 151 VHAVAHVLEMQGRFKEGIAFMESWRDTWDCSS-MLRGHNWWHLALFYLERGDYEAALAIYDT 211 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhhhccCCCc-chhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 56678888999999999999999888765421 11111112233333 47777655555544
No 90
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.56 E-value=7.6e-06 Score=65.41 Aligned_cols=100 Identities=11% Similarity=0.093 Sum_probs=75.5
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhc
Q 022992 106 GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (289)
Q Consensus 106 g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 185 (289)
......+.++..+|..+...|++++|+.+|++++.+.+.. .....++..+|.++..+|++++|+.+|++++.....
T Consensus 29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~- 104 (172)
T PRK02603 29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP---NDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK- 104 (172)
T ss_pred ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc---chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-
Confidence 4455677889999999999999999999999999886542 223468899999999999999999999999854321
Q ss_pred cccccchhhHHHHHHHHHHccCCHHHHHHH
Q 022992 186 NLLKYGVKGHLLNAGICQLCKGDVVAITNA 215 (289)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~ 215 (289)
....+..+|.++...|+...+...
T Consensus 105 ------~~~~~~~lg~~~~~~g~~~~a~~~ 128 (172)
T PRK02603 105 ------QPSALNNIAVIYHKRGEKAEEAGD 128 (172)
T ss_pred ------cHHHHHHHHHHHHHcCChHhHhhC
Confidence 123345667777766664443333
No 91
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.53 E-value=1.6e-05 Score=75.90 Aligned_cols=193 Identities=13% Similarity=0.141 Sum_probs=138.9
Q ss_pred CCHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHh
Q 022992 27 SKYED-AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCD 104 (289)
Q Consensus 27 ~~~~~-A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~ 104 (289)
+.... ...++.+|-..|.. |++++|...+..++..... ...+|..+|.+|.+. +.+++..+.-.|..+-++
T Consensus 133 ~~l~~~l~~ll~eAN~lfar-g~~eeA~~i~~EvIkqdp~------~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~ 205 (895)
T KOG2076|consen 133 SKLAPELRQLLGEANNLFAR-GDLEEAEEILMEVIKQDPR------NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK 205 (895)
T ss_pred cccCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCcc------chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 34444 55666776666655 9999999999999877543 256899999999887 999999999888877664
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Q 022992 105 IGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN 184 (289)
Q Consensus 105 ~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 184 (289)
.. ..|..++....++|++++|+-+|.+|+..-+.. -..+.+-+.+|.++|++..|+..|.++.....
T Consensus 206 d~------e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n------~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p- 272 (895)
T KOG2076|consen 206 DY------ELWKRLADLSEQLGNINQARYCYSRAIQANPSN------WELIYERSSLYQKTGDLKRAMETFLQLLQLDP- 272 (895)
T ss_pred Ch------HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcc------hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-
Confidence 44 489999999999999999999999999986553 24567788999999999999999999974332
Q ss_pred ccccccchhh-HHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHH
Q 022992 185 NNLLKYGVKG-HLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAAS 241 (289)
Q Consensus 185 ~~~~~~~~~~-~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a 241 (289)
+..+.-.. .-......+...++.+.|.+.++.+......-..-....++..|...
T Consensus 273 --~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~ 328 (895)
T KOG2076|consen 273 --PVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLK 328 (895)
T ss_pred --chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH
Confidence 11111111 11123445566777789999999887743333233334444444443
No 92
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.52 E-value=4.9e-07 Score=60.60 Aligned_cols=63 Identities=22% Similarity=0.396 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Q 022992 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE-QYHKSIEIYEEIAR 180 (289)
Q Consensus 112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~ 180 (289)
|..+..+|.++...|++++|+.+|.+|+++.+. -..++.++|.++..+| ++++|++.|++++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~------~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN------NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT------HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 568899999999999999999999999998654 2468999999999999 79999999999874
No 93
>PLN03077 Protein ECB2; Provisional
Probab=98.50 E-value=0.00021 Score=71.40 Aligned_cols=129 Identities=5% Similarity=0.040 Sum_probs=67.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-hhccccccchh
Q 022992 115 YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS-LNNNLLKYGVK 193 (289)
Q Consensus 115 l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 193 (289)
|+.+...|...|+.++|++.|++..+. |-.+.. .++..+-..+...|.+++|.++|++..... ..+ ..
T Consensus 557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~----g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P------~~ 625 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVES----GVNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP------NL 625 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC------ch
Confidence 455555566666667766666665432 111111 234455556666777777777777664221 111 11
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHc-ccCHHHHHHHHHhccccC
Q 022992 194 GHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMD-EEDIAKFTDVVKEFDSMT 261 (289)
Q Consensus 194 ~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~-~~d~~~~~~al~~~~~~~ 261 (289)
..|..++.++...|+.++|.+.+++. .+. +.......|+.++. .++.+..+.+.+..-.+.
T Consensus 626 ~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~------pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~ 687 (857)
T PLN03077 626 KHYACVVDLLGRAGKLTEAYNFINKM-PIT------PDPAVWGALLNACRIHRHVELGELAAQHIFELD 687 (857)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHC-CCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Confidence 23444555566677777777776552 111 12234455666664 566665555554433333
No 94
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.50 E-value=1.4e-06 Score=60.83 Aligned_cols=81 Identities=17% Similarity=0.255 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhc
Q 022992 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE 166 (289)
Q Consensus 87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 166 (289)
++++|+.+++++++..+. ++ ....+..+|.++...|++++|+..+++ ..+.+. ...+...+|.++..+|
T Consensus 4 ~y~~Ai~~~~k~~~~~~~--~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~------~~~~~~l~a~~~~~l~ 72 (84)
T PF12895_consen 4 NYENAIKYYEKLLELDPT--NP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS------NPDIHYLLARCLLKLG 72 (84)
T ss_dssp -HHHHHHHHHHHHHHHCG--TH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC------HHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHCCC--Ch--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC------CHHHHHHHHHHHHHhC
Confidence 688999999999988775 22 444777799999999999999999998 444332 1346667799999999
Q ss_pred CHHHHHHHHHHH
Q 022992 167 QYHKSIEIYEEI 178 (289)
Q Consensus 167 ~~~~A~~~~~~a 178 (289)
+|++|++.|+++
T Consensus 73 ~y~eAi~~l~~~ 84 (84)
T PF12895_consen 73 KYEEAIKALEKA 84 (84)
T ss_dssp -HHHHHHHHHHH
T ss_pred CHHHHHHHHhcC
Confidence 999999999874
No 95
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.50 E-value=1.4e-06 Score=66.53 Aligned_cols=98 Identities=12% Similarity=0.068 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchH
Q 022992 73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSA 151 (289)
Q Consensus 73 a~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~ 151 (289)
...+...|.++... ++++|++++++++.+.+.. ...+..+|.++...|++++|+.+|++++.+.+..
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------ 84 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN------SRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD------ 84 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC------
Confidence 35567777777666 9999999999998876543 4588999999999999999999999999986543
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992 152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQS 182 (289)
Q Consensus 152 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 182 (289)
...+..+|.++...|++++|+..|++++...
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3577899999999999999999999997543
No 96
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=4e-06 Score=73.64 Aligned_cols=140 Identities=15% Similarity=0.211 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCcc---------chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT---------TSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180 (289)
Q Consensus 110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 180 (289)
..|.....-|..|.+.|++..|+..|++|+..+....+. .....++.|++.++.++++|.+|++..++++.
T Consensus 206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE 285 (397)
T ss_pred HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 355567777888888899999999999999987743221 22335889999999999999999999999984
Q ss_pred HHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-CchHHHHHHHHHHHHcccCHHHHHHHHHh
Q 022992 181 QSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS-GTREYRLLSDIAASMDEEDIAKFTDVVKE 256 (289)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~-~~~e~~~l~~l~~a~~~~d~~~~~~al~~ 256 (289)
... +...++++-|.+++..|+++.|+..|++++++.|.-. -..|-..+..-...+...+.+.|......
T Consensus 286 ~~~-------~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 286 LDP-------NNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred cCC-------CchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 432 2234678889999999999999999999999988753 22334444444444444445555555544
No 97
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.49 E-value=1.1e-06 Score=78.58 Aligned_cols=86 Identities=16% Similarity=0.151 Sum_probs=51.7
Q ss_pred HccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHH
Q 022992 83 YKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYA 162 (289)
Q Consensus 83 ~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~ 162 (289)
+...++++|+++|++|+.+.+.. +.++.++|.++..+|++++|+..+++|+.+.+.. ..++..+|.++
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~P~~------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~------~~a~~~lg~~~ 80 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLDPNN------AELYADRAQANIKLGNFTEAVADANKAIELDPSL------AKAYLRKGTAC 80 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC------HHHHHHHHHHH
Confidence 33346666666666666654432 2356666666666666666666666666664432 23566666666
Q ss_pred HHhcCHHHHHHHHHHHHH
Q 022992 163 AELEQYHKSIEIYEEIAR 180 (289)
Q Consensus 163 ~~~g~~~~A~~~~~~a~~ 180 (289)
..+|+|++|+..|++++.
T Consensus 81 ~~lg~~~eA~~~~~~al~ 98 (356)
T PLN03088 81 MKLEEYQTAKAALEKGAS 98 (356)
T ss_pred HHhCCHHHHHHHHHHHHH
Confidence 666666666666666653
No 98
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.47 E-value=5.2e-06 Score=81.36 Aligned_cols=186 Identities=11% Similarity=0.082 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCcc
Q 022992 69 KHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT 148 (289)
Q Consensus 69 ~~~aa~~~~~~a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~ 148 (289)
+......+..+...++.++++.|++.|++++...+...- ....+..++...|+.++|+.++++++ .+...
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~------av~dll~l~~~~G~~~~A~~~~eka~--~p~n~-- 100 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSG------QVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNI-- 100 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchh------hHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCC--
Confidence 334445667767777888999999999999988775421 12266666667799999999999998 22222
Q ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCC
Q 022992 149 TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSG 228 (289)
Q Consensus 149 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~ 228 (289)
....+..+|.++...|+|++|++.|++++...+.+ ...+..++.++...++.++|...++++...+|.
T Consensus 101 --~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n-------~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~--- 168 (822)
T PRK14574 101 --SSRGLASAARAYRNEKRWDQALALWQSSLKKDPTN-------PDLISGMIMTQADAGRGGVVLKQATELAERDPT--- 168 (822)
T ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc---
Confidence 12345566889999999999999999998654332 233444567778889999998888887766555
Q ss_pred chHHHHHHHHHHHHc-ccCHHHHHHHHHhccccCCCchhHHHHHHHHHHhccccc
Q 022992 229 TREYRLLSDIAASMD-EEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKE 282 (289)
Q Consensus 229 ~~e~~~l~~l~~a~~-~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 282 (289)
..... +.++. .+ .....+|+..|..+...+|.+...+.+....|..-+
T Consensus 169 ~~~~l-----~layL~~~-~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~ 217 (822)
T PRK14574 169 VQNYM-----TLSYLNRA-TDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNR 217 (822)
T ss_pred hHHHH-----HHHHHHHh-cchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 22222 22222 12 333434888888888888998888877776665443
No 99
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.47 E-value=2.2e-06 Score=76.55 Aligned_cols=100 Identities=14% Similarity=0.148 Sum_probs=83.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhh
Q 022992 115 YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKG 194 (289)
Q Consensus 115 l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 194 (289)
+...|......|++++|+.+|.+|+++.+.. ..++.++|.++..+|++++|+..+++++.... ....
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-------~~~~ 71 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN------AELYADRAQANIKLGNFTEAVADANKAIELDP-------SLAK 71 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-------CCHH
Confidence 4555666667799999999999999986643 35789999999999999999999999985432 1234
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992 195 HLLNAGICQLCKGDVVAITNALERYQDMDPTFS 227 (289)
Q Consensus 195 ~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~ 227 (289)
.++++|.++...|++..|...|++++.++|...
T Consensus 72 a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~ 104 (356)
T PLN03088 72 AYLRKGTACMKLEEYQTAKAALEKGASLAPGDS 104 (356)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 577889999999999999999999999887754
No 100
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.45 E-value=4.3e-06 Score=61.90 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=79.8
Q ss_pred HHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHH
Q 022992 74 QAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSAN 152 (289)
Q Consensus 74 ~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~ 152 (289)
..+...|..+... ++++|++.|.+++..++.. .....++..+|.++...|++++|+.+|++++..++... ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~ 76 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKS---TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP---KAP 76 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC---ccc
Confidence 3556667777555 8999999999998765432 22356788899999999999999999999998775432 123
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992 153 QCKQKVAQYAAELEQYHKSIEIYEEIARQS 182 (289)
Q Consensus 153 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 182 (289)
.++..+|.++..+|++++|+.+|++++...
T Consensus 77 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 77 DALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 568899999999999999999999987543
No 101
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.45 E-value=1.5e-06 Score=60.42 Aligned_cols=93 Identities=22% Similarity=0.304 Sum_probs=75.1
Q ss_pred HHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHH
Q 022992 75 AYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQ 153 (289)
Q Consensus 75 ~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~ 153 (289)
++..+|.++... ++++|+.++++++...+... .++..+|.++...+++++|+.+|++++.+.+... .
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~ 69 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA------DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA------K 69 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch------h
Confidence 345566666555 88999999998888765432 5788899999998999999999999998765533 5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992 154 CKQKVAQYAAELEQYHKSIEIYEEIA 179 (289)
Q Consensus 154 ~~~~l~~~~~~~g~~~~A~~~~~~a~ 179 (289)
++..+|.++...|++++|..++.++.
T Consensus 70 ~~~~~~~~~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 70 AYYNLGLAYYKLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 78899999999999999999998875
No 102
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.44 E-value=2.7e-06 Score=59.40 Aligned_cols=83 Identities=19% Similarity=0.246 Sum_probs=62.6
Q ss_pred cCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHH
Q 022992 125 EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQL 204 (289)
Q Consensus 125 ~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 204 (289)
.|++++|+.+|++.++..+.. + ...++..+|.++..+|+|++|+.++++ .... . .........|.|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~--~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~-----~~~~~~~l~a~~~~ 69 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTN--P--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--P-----SNPDIHYLLARCLL 69 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGT--H--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--H-----CHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCC--h--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--C-----CCHHHHHHHHHHHH
Confidence 489999999999999987642 1 345778899999999999999999988 3111 1 11223344589999
Q ss_pred ccCCHHHHHHHHHHH
Q 022992 205 CKGDVVAITNALERY 219 (289)
Q Consensus 205 ~~gd~~~A~~~~~~~ 219 (289)
.+|++++|+++|+++
T Consensus 70 ~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 70 KLGKYEEAIKALEKA 84 (84)
T ss_dssp HTT-HHHHHHHHHHH
T ss_pred HhCCHHHHHHHHhcC
Confidence 999999999999874
No 103
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.44 E-value=9.4e-06 Score=68.65 Aligned_cols=103 Identities=18% Similarity=0.207 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccc
Q 022992 71 EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT 149 (289)
Q Consensus 71 ~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~ 149 (289)
..|..+..=|+-..+. +|.+|+..|.+|+.+-+.+ +-.+-+-|-+|.++|.++.|++-++.|+.+.+.
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n------AVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~----- 147 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTN------AVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH----- 147 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc------chHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-----
Confidence 4455566666666555 9999999999999997754 347888899999999999999999999998653
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhc
Q 022992 150 SANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (289)
Q Consensus 150 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 185 (289)
-...|..+|.+|..+|+|.+|++.|++++.....+
T Consensus 148 -yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~N 182 (304)
T KOG0553|consen 148 -YSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDN 182 (304)
T ss_pred -HHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCc
Confidence 34689999999999999999999999998655443
No 104
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=5.5e-06 Score=72.76 Aligned_cols=129 Identities=12% Similarity=0.143 Sum_probs=89.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcC--CHH-------HHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCH
Q 022992 39 AANSFKLAKSWDKAGATYVKLANCHLKLE--SKH-------EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL 108 (289)
Q Consensus 39 A~~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~-------~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~ 108 (289)
-|+.|.+.|+|..|..-|.+|+.....-. +.. --..++.|++.||.+. ++.+|+.++.+++++-+.+-
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~-- 291 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV-- 291 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch--
Confidence 35555555556666666665555543111 110 0134788999999888 99999999999999866544
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHH-HHHHHHHH
Q 022992 109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS-IEIYEEIA 179 (289)
Q Consensus 109 ~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~a~ 179 (289)
++|..-|.++...|+++.|+..|++|+++.+.+. .+...|..+..+..++.+. -+.|....
T Consensus 292 ----KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nk------a~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 292 ----KALYRRGQALLALGEYDLARDDFQKALKLEPSNK------AARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred ----hHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4899999999999999999999999999987653 3455666666655555443 55676664
No 105
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.43 E-value=0.00012 Score=66.76 Aligned_cols=224 Identities=13% Similarity=0.061 Sum_probs=118.4
Q ss_pred HHHHHhhc-cC-CCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 022992 13 KKAEKKLN-GW-GLFGSKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAY 76 (289)
Q Consensus 13 ~~A~~~~k-~~-~~~~~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~ 76 (289)
++|.+.+. |. .++.|||..|.+...++ +.+....|+++.|..++.++.+.....+- . ..
T Consensus 82 ~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l---~--~~ 156 (409)
T TIGR00540 82 RKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNI---L--VE 156 (409)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCch---H--HH
Confidence 34444443 42 23447777777776665 34455678888888888887655432211 1 11
Q ss_pred HHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC---------
Q 022992 77 VDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE--------- 146 (289)
Q Consensus 77 ~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~--------- 146 (289)
...+.++... +++.|...+++..+..+++.. ++..++.++...|++++|.+.+.+..+.-...+
T Consensus 157 ~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~------~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~ 230 (409)
T TIGR00540 157 IARTRILLAQNELHAARHGVDKLLEMAPRHKE------VLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQK 230 (409)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 1124444444 788888888887777654443 677777777777887777777666654311000
Q ss_pred ------------------------cc---chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHH
Q 022992 147 ------------------------VT---TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNA 199 (289)
Q Consensus 147 ------------------------~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 199 (289)
.+ +........++..+...|++++|.+.+++++....++ . ......+ .
T Consensus 231 a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~---~-~~~~~~l-~ 305 (409)
T TIGR00540 231 AEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDD---R-AISLPLC-L 305 (409)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc---c-cchhHHH-H
Confidence 00 0123344555556666677777777777666432211 0 0000011 1
Q ss_pred HHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-cccCHHHHHHHHH
Q 022992 200 GICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASM-DEEDIAKFTDVVK 255 (289)
Q Consensus 200 ~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~-~~~d~~~~~~al~ 255 (289)
....+..++...+.+.++++++..|. +.++.++..++..+ ..|+.+.-.+.++
T Consensus 306 ~~~~l~~~~~~~~~~~~e~~lk~~p~---~~~~~ll~sLg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 306 PIPRLKPEDNEKLEKLIEKQAKNVDD---KPKCCINRALGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred HhhhcCCCChHHHHHHHHHHHHhCCC---ChhHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 22233345666666666666654433 22234455555543 3554444333333
No 106
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.43 E-value=6.5e-05 Score=63.48 Aligned_cols=176 Identities=14% Similarity=0.093 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHH
Q 022992 73 AQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSAN 152 (289)
Q Consensus 73 a~~~~~~a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~ 152 (289)
...|..+-..+...++++|++.|++.+..++.. ..+..+...+|.++...+++++|+..|++.++.++.... +.
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s---~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~---~~ 106 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPFG---PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN---ID 106 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc---hH
Confidence 335555555556669999999999999988744 355666889999999999999999999999999987653 45
Q ss_pred HHHHHHHHHHHHhc------------------CHHHHHHHHHHHHHHHhhccccc----------cchhhHHHHHHHHHH
Q 022992 153 QCKQKVAQYAAELE------------------QYHKSIEIYEEIARQSLNNNLLK----------YGVKGHLLNAGICQL 204 (289)
Q Consensus 153 ~~~~~l~~~~~~~g------------------~~~~A~~~~~~a~~~~~~~~~~~----------~~~~~~~~~~~~~~l 204 (289)
.++..+|.++..++ ...+|+..|++.+...++..... -.....-+.++.-|.
T Consensus 107 ~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~ 186 (243)
T PRK10866 107 YVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYT 186 (243)
T ss_pred HHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788887654333 23578888888875543321100 000111123555677
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHc-ccCHHHHHHHHHh
Q 022992 205 CKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMD-EEDIAKFTDVVKE 256 (289)
Q Consensus 205 ~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~-~~d~~~~~~al~~ 256 (289)
..|.+..|...++..++-.|......|+ +.-+..++. .|..+.....++.
T Consensus 187 ~~~~y~AA~~r~~~v~~~Yp~t~~~~ea--l~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 187 KRGAYVAVVNRVEQMLRDYPDTQATRDA--LPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HcCchHHHHHHHHHHHHHCCCCchHHHH--HHHHHHHHHHcCChHHHHHHHHH
Confidence 8899999999998888766665555554 556778874 7777776665544
No 107
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.42 E-value=4.4e-06 Score=69.27 Aligned_cols=154 Identities=12% Similarity=0.047 Sum_probs=114.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 022992 38 KAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCY-KKTSSNEAISCLEQAVNMFCDIGRLSMAARYYK 116 (289)
Q Consensus 38 ~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~-~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~ 116 (289)
+.++.+...|+-+.+..+..+++..+.... ..+...|... +..++..|+..+++|..+-+..+. .++
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~------~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~------~~~ 138 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKSAIAYPKDR------ELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWE------AWN 138 (257)
T ss_pred HHHHHHHhcccccchHHHHhhhhccCcccH------HHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChh------hhh
Confidence 445556667777777777666665543321 1122244444 444999999999999999887665 999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHH
Q 022992 117 EIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHL 196 (289)
Q Consensus 117 ~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 196 (289)
.+|.+|.+.|+.+.|..-|.+|++++.... .+.+|+|..+...|+++.|..++.++......++ ...
T Consensus 139 ~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p------~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~-------~v~ 205 (257)
T COG5010 139 LLGAALDQLGRFDEARRAYRQALELAPNEP------SIANNLGMSLLLRGDLEDAETLLLPAYLSPAADS-------RVR 205 (257)
T ss_pred HHHHHHHHccChhHHHHHHHHHHHhccCCc------hhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCch-------HHH
Confidence 999999999999999999999999987654 5789999999999999999999999863322111 123
Q ss_pred HHHHHHHHccCCHHHHHHHH
Q 022992 197 LNAGICQLCKGDVVAITNAL 216 (289)
Q Consensus 197 ~~~~~~~l~~gd~~~A~~~~ 216 (289)
.++.++.-..||+..|.+..
T Consensus 206 ~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 206 QNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HHHHHHHhhcCChHHHHhhc
Confidence 45667777889988876654
No 108
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.42 E-value=5.3e-05 Score=62.25 Aligned_cols=169 Identities=18% Similarity=0.172 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHH
Q 022992 34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAA 112 (289)
Q Consensus 34 ~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a 112 (289)
.+|..+.. +...|+|.+|+..|.+....+.... -+..+...+|.++... ++++|+..+++-+..++.... +.
T Consensus 7 ~lY~~a~~-~~~~g~y~~Ai~~f~~l~~~~P~s~---~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~---~~ 79 (203)
T PF13525_consen 7 ALYQKALE-ALQQGDYEEAIKLFEKLIDRYPNSP---YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK---AD 79 (203)
T ss_dssp HHHHHHHH-HHHCT-HHHHHHHHHHHHHH-TTST---THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT---HH
T ss_pred HHHHHHHH-HHHCCCHHHHHHHHHHHHHHCCCCh---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc---hh
Confidence 34444444 4467888888888888888776433 2344566778888666 999999999999999987665 44
Q ss_pred HHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHHHhccCccchH-----------HHHHHHHHHHHHHhcCHHH
Q 022992 113 RYYKEIAELYESE-----------HNIEQTIVFFEKAADMFQNEEVTTSA-----------NQCKQKVAQYAAELEQYHK 170 (289)
Q Consensus 113 ~~l~~la~~~~~~-----------g~~~~A~~~y~~A~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~ 170 (289)
.++..+|.++... +...+|+..|+.-+..|+...-...+ +.--..+|..|.+.|.|..
T Consensus 80 ~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~a 159 (203)
T PF13525_consen 80 YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKA 159 (203)
T ss_dssp HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHH
T ss_pred hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 5566666664332 34568999999999999876543222 1223456778899999999
Q ss_pred HHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHH
Q 022992 171 SIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAIT 213 (289)
Q Consensus 171 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~ 213 (289)
|+..|+.++....+.+ ....++..++.++...|+...|.
T Consensus 160 A~~r~~~v~~~yp~t~----~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 160 AIIRFQYVIENYPDTP----AAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHSTTSH----HHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHCCCCc----hHHHHHHHHHHHHHHhCChHHHH
Confidence 9999999986654432 23345667778888888876443
No 109
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.42 E-value=6.6e-05 Score=73.49 Aligned_cols=140 Identities=13% Similarity=0.058 Sum_probs=97.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHh
Q 022992 26 GSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCD 104 (289)
Q Consensus 26 ~~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~ 104 (289)
.|.+.+|+. +....|...+++++++.....+++.... ....|.-.|.++.+. +++++... +++.++..
T Consensus 27 ~p~n~~a~~---~Li~~~~~~~~~deai~i~~~~l~~~P~------~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~ 95 (906)
T PRK14720 27 SLSKFKELD---DLIDAYKSENLTDEAKDICEEHLKEHKK------SISALYISGILSLSRRPLNDSNLL--NLIDSFSQ 95 (906)
T ss_pred CcchHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHhCCc------ceehHHHHHHHHHhhcchhhhhhh--hhhhhccc
Confidence 455555554 6777888899999999998877665432 122333334444333 33333333 33333333
Q ss_pred cC-------------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHH
Q 022992 105 IG-------------RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS 171 (289)
Q Consensus 105 ~g-------------~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 171 (289)
.. +....-.++..+|.||..+|+.++|...|++++++.+.+ +.+++++|..|... +.++|
T Consensus 96 ~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n------~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 96 NLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDN------PEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred ccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHh-hHHHH
Confidence 22 222333589999999999999999999999999987433 36899999999999 99999
Q ss_pred HHHHHHHHHHHh
Q 022992 172 IEIYEEIARQSL 183 (289)
Q Consensus 172 ~~~~~~a~~~~~ 183 (289)
.+++.+++.+..
T Consensus 169 ~~m~~KAV~~~i 180 (906)
T PRK14720 169 ITYLKKAIYRFI 180 (906)
T ss_pred HHHHHHHHHHHH
Confidence 999999975543
No 110
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.42 E-value=9.3e-05 Score=60.80 Aligned_cols=154 Identities=19% Similarity=0.232 Sum_probs=113.1
Q ss_pred hHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCH
Q 022992 7 RAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKA-----------------ANSFKLAKSWDKAGATYVKLANCHLKLESK 69 (289)
Q Consensus 7 ~a~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A-----------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 69 (289)
.+..++.+|...+.. |+|.+|+..|... +.++...|++++|+..|.+.+..+......
T Consensus 4 ~~~~lY~~a~~~~~~-----g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~ 78 (203)
T PF13525_consen 4 TAEALYQKALEALQQ-----GDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA 78 (203)
T ss_dssp -HHHHHHHHHHHHHC-----T-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH
T ss_pred CHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch
Confidence 688899999999884 6899999999887 566788999999999999999998865543
Q ss_pred HHHHHHHHHHHHHHc-----------cC-CHHHHHHHHHHHHHHHHhcCCHHH-----------HHHHHHHHHHHHHhcC
Q 022992 70 HEAAQAYVDAAHCYK-----------KT-SSNEAISCLEQAVNMFCDIGRLSM-----------AARYYKEIAELYESEH 126 (289)
Q Consensus 70 ~~aa~~~~~~a~~~~-----------~~-~~~~A~~~~~~A~~~~~~~g~~~~-----------~a~~l~~la~~~~~~g 126 (289)
..++...|.++. .. ...+|+..++..+..|+...-... .+.--..+|..|...|
T Consensus 79 ---~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~ 155 (203)
T PF13525_consen 79 ---DYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRG 155 (203)
T ss_dssp ---HHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred ---hhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 234444444432 12 457899999999999987765433 3444556789999999
Q ss_pred CHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHH
Q 022992 127 NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS 171 (289)
Q Consensus 127 ~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 171 (289)
.+..|+..|+..++-|+... ....++..++..+..+|..+.|
T Consensus 156 ~y~aA~~r~~~v~~~yp~t~---~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 156 KYKAAIIRFQYVIENYPDTP---AAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp -HHHHHHHHHHHHHHSTTSH---HHHHHHHHHHHHHHHTT-HHHH
T ss_pred cHHHHHHHHHHHHHHCCCCc---hHHHHHHHHHHHHHHhCChHHH
Confidence 99999999999999998654 3556889999999999988744
No 111
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.42 E-value=2.9e-05 Score=70.58 Aligned_cols=158 Identities=9% Similarity=0.062 Sum_probs=100.9
Q ss_pred HHHHHHhhc-cCC-CCCCCHHHHHHHHHHHHH--------------HHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 022992 12 EKKAEKKLN-GWG-LFGSKYEDAADLFDKAAN--------------SFKLAKSWDKAGATYVKLANCHLKLESKHEAAQA 75 (289)
Q Consensus 12 ~~~A~~~~k-~~~-~~~~~~~~A~~~~~~A~~--------------~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~ 75 (289)
.++|.+.+. |.. ++.|||++|.....++.. .-...|+++.|..++.++.+..+... .+..
T Consensus 81 ~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~----~~~~ 156 (398)
T PRK10747 81 RRRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQ----LPVE 156 (398)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcch----HHHH
Confidence 344444444 432 345888888877776533 23568888999999888876533211 1111
Q ss_pred HHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc---------
Q 022992 76 YVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE--------- 145 (289)
Q Consensus 76 ~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~--------- 145 (289)
...+.++... ++++|+..++++.+..+++.. ++.-++.+|...|++++|++.+.+........
T Consensus 157 -l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~------al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~ 229 (398)
T PRK10747 157 -ITRVRIQLARNENHAARHGVDKLLEVAPRHPE------VLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQ 229 (398)
T ss_pred -HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 1235666554 999999999999888765543 67777788888888888886666555321100
Q ss_pred --------------C-------------ccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992 146 --------------E-------------VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180 (289)
Q Consensus 146 --------------~-------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 180 (289)
+ ..+....+...++..+...|+.++|.+..+++..
T Consensus 230 ~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~ 291 (398)
T PRK10747 230 QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK 291 (398)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 0 0011223556677888889999999999988863
No 112
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.41 E-value=7.2e-06 Score=69.92 Aligned_cols=106 Identities=9% Similarity=0.126 Sum_probs=85.1
Q ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccc
Q 022992 113 RYYKEIAELY-ESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG 191 (289)
Q Consensus 113 ~~l~~la~~~-~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 191 (289)
......|..+ ...|++++|+..|++.+..++... ....++.++|.+|...|+|++|+..|++++....+.+ .
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~---~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~----~ 215 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDST---YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP----K 215 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc----c
Confidence 4455555544 445999999999999999998753 3446889999999999999999999999986544332 3
Q ss_pred hhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992 192 VKGHLLNAGICQLCKGDVVAITNALERYQDMDPT 225 (289)
Q Consensus 192 ~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~ 225 (289)
...+++++|.++...|+...|...|+......|.
T Consensus 216 ~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 216 AADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 4567888999999999999999999998876655
No 113
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.41 E-value=0.00013 Score=73.57 Aligned_cols=95 Identities=7% Similarity=0.076 Sum_probs=41.4
Q ss_pred HHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHH
Q 022992 75 AYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQ 153 (289)
Q Consensus 75 ~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~ 153 (289)
+|..+...|-+. ++++|.+.|++..+.-. ..-..+++.+...|.+.|++++|+..|.+..+. |-.+. ..
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi-----~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~----Gv~PD-~~ 650 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNI-----KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK----GVKPD-EV 650 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-----CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HH
Confidence 333444444333 56666666555432210 001123444444455555555555555544321 11111 12
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992 154 CKQKVAQYAAELEQYHKSIEIYEEIA 179 (289)
Q Consensus 154 ~~~~l~~~~~~~g~~~~A~~~~~~a~ 179 (289)
++..+...+.+.|++++|.+++.+..
T Consensus 651 TynsLI~a~~k~G~~eeA~~l~~eM~ 676 (1060)
T PLN03218 651 FFSALVDVAGHAGDLDKAFEILQDAR 676 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34444455555555555555555443
No 114
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.40 E-value=0.00021 Score=72.22 Aligned_cols=173 Identities=10% Similarity=0.166 Sum_probs=90.7
Q ss_pred CCHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CH
Q 022992 27 SKYEDAADLFDKA-----------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SS 88 (289)
Q Consensus 27 ~~~~~A~~~~~~A-----------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~ 88 (289)
|++++|.+.|... ...|...|++++|...|.++.+. |- ..-...|+.+...|.+. ++
T Consensus 556 G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~----gi-~p~~~tynsLI~ay~k~G~~ 630 (1060)
T PLN03218 556 GAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY----NI-KGTPEVYTIAVNSCSQKGDW 630 (1060)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----CC-CCChHHHHHHHHHHHhcCCH
Confidence 5666666666554 23456677777777777665443 10 01123555556666544 77
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCH
Q 022992 89 NEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQY 168 (289)
Q Consensus 89 ~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 168 (289)
++|+..|.+....-. .+. ..++..+...+...|++++|.+.+.+..+. |-... ..+++.+...|.+.|++
T Consensus 631 deAl~lf~eM~~~Gv---~PD--~~TynsLI~a~~k~G~~eeA~~l~~eM~k~----G~~pd-~~tynsLI~ay~k~G~~ 700 (1060)
T PLN03218 631 DFALSIYDDMKKKGV---KPD--EVFFSALVDVAGHAGDLDKAFEILQDARKQ----GIKLG-TVSYSSLMGACSNAKNW 700 (1060)
T ss_pred HHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhCCCH
Confidence 777777665543211 111 235555556666666666666666665432 11111 13556666666666666
Q ss_pred HHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHh
Q 022992 169 HKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (289)
Q Consensus 169 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~ 220 (289)
++|.++|++........ ....|..+...|...|+.++|.+.|++..
T Consensus 701 eeA~~lf~eM~~~g~~P------dvvtyN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 701 KKALELYEDIKSIKLRP------TVSTMNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred HHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66666666654221111 11123344444555666666666666543
No 115
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.38 E-value=0.00021 Score=69.81 Aligned_cols=212 Identities=12% Similarity=0.117 Sum_probs=120.6
Q ss_pred CCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHH
Q 022992 27 SKYEDAADLFDKA-----------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISC 94 (289)
Q Consensus 27 ~~~~~A~~~~~~A-----------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~ 94 (289)
|++++|...|+.. ...|...|++++|...|.+..+. |-.. -..+|..+..++.+. ++++|.+.
T Consensus 273 g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~----g~~p-d~~t~~~ll~a~~~~g~~~~a~~i 347 (697)
T PLN03081 273 GDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS----GVSI-DQFTFSIMIRIFSRLALLEHAKQA 347 (697)
T ss_pred CCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhccchHHHHHH
Confidence 7777777777642 45577788888888888776432 1110 122455555555444 66666666
Q ss_pred HHHHH---------------HHHHhcCCHHHHHH-----------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCcc
Q 022992 95 LEQAV---------------NMFCDIGRLSMAAR-----------YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT 148 (289)
Q Consensus 95 ~~~A~---------------~~~~~~g~~~~~a~-----------~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~ 148 (289)
+.... +.|.+.|+...+-. +|+.+...|...|+.++|++.|++..+. |-.
T Consensus 348 ~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~----g~~ 423 (697)
T PLN03081 348 HAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAE----GVA 423 (697)
T ss_pred HHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC
Confidence 55443 33444454444433 3556666677777777777777776542 222
Q ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCC
Q 022992 149 TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSG 228 (289)
Q Consensus 149 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~ 228 (289)
+.. .++..+...+...|.+++|.++|+.......-. .....|..++.++...|+.++|.+.+++. + +
T Consensus 424 Pd~-~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~-----p~~~~y~~li~~l~r~G~~~eA~~~~~~~----~-~-- 490 (697)
T PLN03081 424 PNH-VTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK-----PRAMHYACMIELLGREGLLDEAYAMIRRA----P-F-- 490 (697)
T ss_pred CCH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCC-----CCccchHhHHHHHHhcCCHHHHHHHHHHC----C-C--
Confidence 221 346666677777778888888777765321000 11122344555566678888887776542 1 1
Q ss_pred chHHHHHHHHHHHHc-ccCHHHHHHHHHhcccc
Q 022992 229 TREYRLLSDIAASMD-EEDIAKFTDVVKEFDSM 260 (289)
Q Consensus 229 ~~e~~~l~~l~~a~~-~~d~~~~~~al~~~~~~ 260 (289)
.+...+...|+.++. .|+.+....+.+..-.+
T Consensus 491 ~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~ 523 (697)
T PLN03081 491 KPTVNMWAALLTACRIHKNLELGRLAAEKLYGM 523 (697)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC
Confidence 112244566777774 77776666665553333
No 116
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=1.3e-05 Score=70.44 Aligned_cols=128 Identities=14% Similarity=0.130 Sum_probs=102.8
Q ss_pred CHHHHHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHH
Q 022992 87 SSNEAISCLEQAVNMFCDIGRL------SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQ 160 (289)
Q Consensus 87 ~~~~A~~~~~~A~~~~~~~g~~------~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~ 160 (289)
+.+.|+.+|++++.+-+...+. ...-..+.+-|.-..+.|++..|.++|..|+.+.+.. ....+.++.+.+.
T Consensus 218 ~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n--~~~naklY~nra~ 295 (486)
T KOG0550|consen 218 NADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN--KKTNAKLYGNRAL 295 (486)
T ss_pred chHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc--cchhHHHHHHhHh
Confidence 8899999999999887765432 2234455566888788899999999999999998863 3445678999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcC
Q 022992 161 YAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMD 223 (289)
Q Consensus 161 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~ 223 (289)
+...+|+..+|+.-.+.++... . .-...+...+.||+..++++.|++.|+++.+..
T Consensus 296 v~~rLgrl~eaisdc~~Al~iD--~-----syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 296 VNIRLGRLREAISDCNEALKID--S-----SYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred hhcccCCchhhhhhhhhhhhcC--H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999997432 1 223457778999999999999999999987644
No 117
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.36 E-value=2.9e-06 Score=56.73 Aligned_cols=66 Identities=18% Similarity=0.268 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccC-CHHHHHHHHHHHhhcCC
Q 022992 152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKG-DVVAITNALERYQDMDP 224 (289)
Q Consensus 152 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-d~~~A~~~~~~~~~~~~ 224 (289)
+.++..+|.++...|+|++|+.+|++++.... .....++++|.|+..+| ++.+|...++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-------~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP-------NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST-------THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 46789999999999999999999999985532 22346889999999999 79999999999998775
No 118
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.35 E-value=0.00011 Score=71.81 Aligned_cols=34 Identities=24% Similarity=0.237 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHH
Q 022992 27 SKYEDAADLFDKA-----------ANSFKLAKSWDKAGATYVKLA 60 (289)
Q Consensus 27 ~~~~~A~~~~~~A-----------~~~~~~~g~~~~A~~~~~~a~ 60 (289)
|+++.|...|+.. ...|...|++++|...|.+..
T Consensus 172 g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~ 216 (697)
T PLN03081 172 GMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMW 216 (697)
T ss_pred CCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 6667777665542 345666777777777777764
No 119
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.33 E-value=6.9e-06 Score=70.03 Aligned_cols=107 Identities=7% Similarity=0.045 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHH
Q 022992 33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMA 111 (289)
Q Consensus 33 ~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~ 111 (289)
-..|..|-..+...|+|++|+..|.+.+..|.... -+..++..+|.+|... ++++|+.+|++++..|+... ..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~---~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~---~~ 216 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDST---YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP---KA 216 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc---ch
Confidence 44566666665566788888888888877776432 1234556677777555 77777777777777776543 35
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 022992 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE 145 (289)
Q Consensus 112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~ 145 (289)
..++.++|.++...|++++|+..|++.++.|+..
T Consensus 217 ~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 217 ADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 5567777777777777777777777777777653
No 120
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.32 E-value=4.5e-05 Score=65.77 Aligned_cols=182 Identities=12% Similarity=0.042 Sum_probs=112.8
Q ss_pred CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHH
Q 022992 27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA 91 (289)
Q Consensus 27 ~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A 91 (289)
+.+..|...|..| +.+|...|+-.-|+.-+.+.+++ .++..+.-..+ |.++.+. .+++|
T Consensus 52 ~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel-----KpDF~~ARiQR-g~vllK~Gele~A 125 (504)
T KOG0624|consen 52 GQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL-----KPDFMAARIQR-GVVLLKQGELEQA 125 (504)
T ss_pred hhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc-----CccHHHHHHHh-chhhhhcccHHHH
Confidence 5556666666555 33444555555555555555544 12222222222 4444443 88888
Q ss_pred HHHHHHHHHHHHhcCCHHHH---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHH
Q 022992 92 ISCLEQAVNMFCDIGRLSMA---------ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYA 162 (289)
Q Consensus 92 ~~~~~~A~~~~~~~g~~~~~---------a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~ 162 (289)
..=|.+.+.--+.+|....+ -..+......+.-.|+...||++..+.+++.+ +.+..+..-+.+|
T Consensus 126 ~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~------Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 126 EADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP------WDASLRQARAKCY 199 (504)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc------chhHHHHHHHHHH
Confidence 88888887766655533221 11222223333334889999999888888743 4556677778899
Q ss_pred HHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992 163 AELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS 227 (289)
Q Consensus 163 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~ 227 (289)
+..|+...||.-...+..... ...+.++.+...+...||........++.+.++|.+.
T Consensus 200 i~~~e~k~AI~Dlk~askLs~-------DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK 257 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLSQ-------DNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHK 257 (504)
T ss_pred HhcCcHHHHHHHHHHHHhccc-------cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchh
Confidence 999999999998887753221 1224467777777778888888888888888888764
No 121
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=98.31 E-value=0.0003 Score=60.04 Aligned_cols=221 Identities=12% Similarity=0.081 Sum_probs=138.9
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHHHh
Q 022992 27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT--SSNEAISCLEQAVNMFCD 104 (289)
Q Consensus 27 ~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~--~~~~A~~~~~~A~~~~~~ 104 (289)
++|++|+++....+..+...|++..|.+.-.-.++++.+.+.+.... ...++..++... .-.+-..+..+|+.-...
T Consensus 4 kky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~-~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~ 82 (260)
T PF04190_consen 4 KKYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEE-SIARLIELISLFPPEEPERKKFIKAAIKWSKF 82 (260)
T ss_dssp T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHH-HHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCCCcchHHHHHHHHHHHHcc
Confidence 58999999999999999999999999999999999998876544332 335666666544 222345555566655544
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Q 022992 105 IGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN 184 (289)
Q Consensus 105 ~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 184 (289)
.+.+.+-......+|..+.+.+++.+|..||-.+ +++.. .....+-......|.-.+
T Consensus 83 ~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-------~~~~~--~~~~~ll~~~~~~~~~~e-------------- 139 (260)
T PF04190_consen 83 GSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG-------TDPSA--FAYVMLLEEWSTKGYPSE-------------- 139 (260)
T ss_dssp SS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS--------HHHH--HHHHHHHHHHHHHTSS----------------
T ss_pred CCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc-------CChhH--HHHHHHHHHHHHhcCCcc--------------
Confidence 4556677788888888888888888777777322 11100 001011111111121111
Q ss_pred ccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhc----CCCC--------CCchHHHHHHHHHHHHcccCHHHHHH
Q 022992 185 NNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDM----DPTF--------SGTREYRLLSDIAASMDEEDIAKFTD 252 (289)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~----~~~~--------~~~~e~~~l~~l~~a~~~~d~~~~~~ 252 (289)
..-+..++.+.+++.++...|...+..+++. .|.+ ...+--.++.-|+.+++.++.+.|..
T Consensus 140 -------~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~ 212 (260)
T PF04190_consen 140 -------ADLFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKK 212 (260)
T ss_dssp -------HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHH
T ss_pred -------hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHH
Confidence 1123345667788999999999999888765 3332 23455678888889998889999999
Q ss_pred HHHhccccCCCchhHHHHHHHHHHhc
Q 022992 253 VVKEFDSMTPLDPWKTTLLLRVKEKL 278 (289)
Q Consensus 253 al~~~~~~~~~d~~~~~~~~~~~~~~ 278 (289)
..+.|...-.-||.....+.+|.+..
T Consensus 213 L~~~Y~~~L~rd~~~~~~L~~IG~~y 238 (260)
T PF04190_consen 213 LCEKYKPSLKRDPSFKEYLDKIGQLY 238 (260)
T ss_dssp HHHHTHH---HHHHTHHHHHHHHHHH
T ss_pred HHHHhCccccccHHHHHHHHHHHHHH
Confidence 99999997666899999999998753
No 122
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.30 E-value=2.6e-05 Score=58.23 Aligned_cols=100 Identities=15% Similarity=0.108 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccch
Q 022992 113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGV 192 (289)
Q Consensus 113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 192 (289)
+++.+.|.++...|+.++|+.+|++|++.- . +......++..+|..+..+|++++|+..+++......+++. ..
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g--L-~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~---~~ 75 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAG--L-SGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDEL---NA 75 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc---cH
Confidence 467788999999999999999999998742 1 12234468889999999999999999999988754333211 11
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHHH
Q 022992 193 KGHLLNAGICQLCKGDVVAITNALERY 219 (289)
Q Consensus 193 ~~~~~~~~~~~l~~gd~~~A~~~~~~~ 219 (289)
. ...-.+++....|+..+|...+-..
T Consensus 76 ~-l~~f~Al~L~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 76 A-LRVFLALALYNLGRPKEALEWLLEA 101 (120)
T ss_pred H-HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 1 1122345666778888777666544
No 123
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.26 E-value=2.6e-06 Score=56.32 Aligned_cols=60 Identities=13% Similarity=0.206 Sum_probs=51.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992 117 EIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS 182 (289)
Q Consensus 117 ~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 182 (289)
.+|..+...|++++|+..|+++++..+. ...++..+|.++..+|++++|+..|++++...
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPD------NPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTT------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4688888889999999999999987754 45789999999999999999999999998554
No 124
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.25 E-value=4.5e-05 Score=56.92 Aligned_cols=99 Identities=16% Similarity=0.145 Sum_probs=76.5
Q ss_pred HHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHH
Q 022992 75 AYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQ 153 (289)
Q Consensus 75 ~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~ 153 (289)
+..+.|.++... +.++|+.+|++|++.-. +.....+++..+|..+..+|++++|+..+++++.-++.... ...
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL---~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~---~~~ 76 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGL---SGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDEL---NAA 76 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc---cHH
Confidence 445667777665 99999999999987421 22345679999999999999999999999999987765332 223
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992 154 CKQKVAQYAAELEQYHKSIEIYEEIA 179 (289)
Q Consensus 154 ~~~~l~~~~~~~g~~~~A~~~~~~a~ 179 (289)
...-++.++...|++++|++.+-.++
T Consensus 77 l~~f~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 77 LRVFLALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34457788999999999999987775
No 125
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.22 E-value=3.4e-05 Score=57.46 Aligned_cols=108 Identities=11% Similarity=0.103 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccccc
Q 022992 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKY 190 (289)
Q Consensus 111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 190 (289)
..+.+..-|+.+.+.|+.+.|++.|.+|+.+.++. +.+|++-+..+...|+.++|+.-+++++... .+..+
T Consensus 42 ~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~r------aSayNNRAQa~RLq~~~e~ALdDLn~AleLa--g~~tr- 112 (175)
T KOG4555|consen 42 ASRELELKAIALAEAGDLDGALELFGQALCLAPER------ASAYNNRAQALRLQGDDEEALDDLNKALELA--GDQTR- 112 (175)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccc------hHhhccHHHHHHHcCChHHHHHHHHHHHHhc--Cccch-
Confidence 34466677888888899999999999999998764 3589999999999999999999999998443 22211
Q ss_pred chhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992 191 GVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS 227 (289)
Q Consensus 191 ~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~ 227 (289)
.....+...|++|..+|+-+.|+.-|+.+.++...|.
T Consensus 113 tacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 113 TACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFA 149 (175)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHH
Confidence 2334566778899999999999999999888776664
No 126
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=0.00023 Score=62.92 Aligned_cols=182 Identities=10% Similarity=0.045 Sum_probs=113.9
Q ss_pred HHHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHH
Q 022992 80 AHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVA 159 (289)
Q Consensus 80 a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~ 159 (289)
...|...++..|+.+-++++..-.++-. .+..-|..+...+++++|+-.|+.|..+.+- .-++|..+-
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~r~~~------alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~------rL~~Y~GL~ 375 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEPRNHE------ALILKGRLLIALERHTQAVIAFRTAQMLAPY------RLEIYRGLF 375 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCcccch------HHHhccHHHHhccchHHHHHHHHHHHhcchh------hHHHHHHHH
Confidence 3344444888999999999888665543 7777888899999999999999999887642 236888888
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHH---------hh------ccccccchh--------------hHHHHHHHHHHccCCHH
Q 022992 160 QYAAELEQYHKSIEIYEEIARQS---------LN------NNLLKYGVK--------------GHLLNAGICQLCKGDVV 210 (289)
Q Consensus 160 ~~~~~~g~~~~A~~~~~~a~~~~---------~~------~~~~~~~~~--------------~~~~~~~~~~l~~gd~~ 210 (289)
.+|...|++.+|.-.-+.+.... ++ ++..+-.++ .+...++..+...|...
T Consensus 376 hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~ 455 (564)
T KOG1174|consen 376 HSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTK 455 (564)
T ss_pred HHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccc
Confidence 99999999999887666654211 00 000000000 11112223344456666
Q ss_pred HHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccCHHHHHHHHHhccccCCCchhHHHH---HHHHHHhcccc
Q 022992 211 AITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTL---LLRVKEKLKAK 281 (289)
Q Consensus 211 ~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d~~~~~~al~~~~~~~~~d~~~~~~---~~~~~~~~~~~ 281 (289)
.++..+++++...+. +.+.+.|++-+.. ...+++++..|...-++||.+... +.++.+...++
T Consensus 456 D~i~LLe~~L~~~~D------~~LH~~Lgd~~~A--~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~~~ 521 (564)
T KOG1174|consen 456 DIIKLLEKHLIIFPD------VNLHNHLGDIMRA--QNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDDES 521 (564)
T ss_pred hHHHHHHHHHhhccc------cHHHHHHHHHHHH--hhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccCCC
Confidence 666777766654332 2233334443321 245778888888888889888754 34555555533
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.20 E-value=0.00024 Score=59.13 Aligned_cols=146 Identities=12% Similarity=0.159 Sum_probs=104.2
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhc
Q 022992 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE 166 (289)
Q Consensus 87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 166 (289)
+-+.+..+..+++..++... ..+...|......|++..|+..+++|..+-+.+. +.++.+|.+|-+.|
T Consensus 81 ~a~~~l~~~~~~~~~~~~d~------~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~------~~~~~lgaaldq~G 148 (257)
T COG5010 81 DADSSLAVLQKSAIAYPKDR------ELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDW------EAWNLLGAALDQLG 148 (257)
T ss_pred cccchHHHHhhhhccCcccH------HHHHHHHHHHHHhcchHHHHHHHHHHhccCCCCh------hhhhHHHHHHHHcc
Confidence 55555555555544443322 2444588888888999999999999999877654 57899999999999
Q ss_pred CHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHc-cc
Q 022992 167 QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMD-EE 245 (289)
Q Consensus 167 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~-~~ 245 (289)
++++|-..|.++...... ......|+|..++..||...|+..+..+...- .....+..+|..+.. .|
T Consensus 149 r~~~Ar~ay~qAl~L~~~-------~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-----~ad~~v~~NLAl~~~~~g 216 (257)
T COG5010 149 RFDEARRAYRQALELAPN-------EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-----AADSRVRQNLALVVGLQG 216 (257)
T ss_pred ChhHHHHHHHHHHHhccC-------CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-----CCchHHHHHHHHHHhhcC
Confidence 999999999999854322 23456789999999999999999998875421 112245556665553 67
Q ss_pred CHHHHHHHHHh
Q 022992 246 DIAKFTDVVKE 256 (289)
Q Consensus 246 d~~~~~~al~~ 256 (289)
|++..+.....
T Consensus 217 ~~~~A~~i~~~ 227 (257)
T COG5010 217 DFREAEDIAVQ 227 (257)
T ss_pred ChHHHHhhccc
Confidence 76665554433
No 128
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.16 E-value=4e-05 Score=73.99 Aligned_cols=137 Identities=16% Similarity=0.220 Sum_probs=99.9
Q ss_pred CHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHH
Q 022992 28 KYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAI 92 (289)
Q Consensus 28 ~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~ 92 (289)
|...|-.||.+| +..|....+|+.|.....++.+.... ......+...|..|.+. +...|+
T Consensus 507 Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a----~~~k~nW~~rG~yyLea~n~h~aV 582 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPA----FACKENWVQRGPYYLEAHNLHGAV 582 (1238)
T ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchH----HHHHhhhhhccccccCccchhhHH
Confidence 445566666665 34566666777776664444443221 12223444567777666 889999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHH
Q 022992 93 SCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSI 172 (289)
Q Consensus 93 ~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 172 (289)
..++-|+.+.++.-+ +|..+|.+|-..|++..|++.|.+|..+-+.. .-.....+.+...+|+|.+|+
T Consensus 583 ~~fQsALR~dPkD~n------~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s------~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 583 CEFQSALRTDPKDYN------LWLGLGEAYPESGRYSHALKVFTKASLLRPLS------KYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred HHHHHHhcCCchhHH------HHHHHHHHHHhcCceehHHHhhhhhHhcCcHh------HHHHHHHHHHHHHhhhHHHHH
Confidence 999999988876554 99999999999999999999999998875532 134577888899999999999
Q ss_pred HHHHHHHH
Q 022992 173 EIYEEIAR 180 (289)
Q Consensus 173 ~~~~~a~~ 180 (289)
..++.++.
T Consensus 651 d~l~~ii~ 658 (1238)
T KOG1127|consen 651 DALGLIIY 658 (1238)
T ss_pred HHHHHHHH
Confidence 99998873
No 129
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.16 E-value=0.00017 Score=66.79 Aligned_cols=165 Identities=11% Similarity=0.150 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHH
Q 022992 33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMA 111 (289)
Q Consensus 33 ~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~ 111 (289)
..+|.++..+| ..++|.+.+.+....+.-+.+.|+ ++.-.|...-.. +.++|.++.+.++....+.+=
T Consensus 8 ~~lF~~~lk~y-E~kQYkkgLK~~~~iL~k~~eHge------slAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~v---- 76 (700)
T KOG1156|consen 8 NALFRRALKCY-ETKQYKKGLKLIKQILKKFPEHGE------SLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHV---- 76 (700)
T ss_pred HHHHHHHHHHH-HHHHHHhHHHHHHHHHHhCCccch------hHHhccchhhcccchHHHHHHHHHHhccCcccch----
Confidence 34677777777 456888888888888875555544 222334433333 889999999998886555544
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccc
Q 022992 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG 191 (289)
Q Consensus 112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 191 (289)
||.-+|.++....+|++||.+|+.|+.+-+.+ .+++..++.+...+++|+.....-.+.+...+ +
T Consensus 77 --CwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN------~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-------~ 141 (700)
T KOG1156|consen 77 --CWHVLGLLQRSDKKYDEAIKCYRNALKIEKDN------LQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-------S 141 (700)
T ss_pred --hHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-------h
Confidence 99999999999999999999999999885543 26889999999999999998877666553322 2
Q ss_pred hhhHHHHHHHHHHccCCHHHHHHHHHHHhhcC
Q 022992 192 VKGHLLNAGICQLCKGDVVAITNALERYQDMD 223 (289)
Q Consensus 192 ~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~ 223 (289)
....|+..++.+...|++..|...++.+.+..
T Consensus 142 ~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 142 QRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 23345666677778899999988888886644
No 130
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.15 E-value=0.0011 Score=60.31 Aligned_cols=134 Identities=11% Similarity=0.046 Sum_probs=93.5
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHHhcC
Q 022992 28 KYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHC-YKKTSSNEAISCLEQAVNMFCDIG 106 (289)
Q Consensus 28 ~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~-~~~~~~~~A~~~~~~A~~~~~~~g 106 (289)
+...+-..+.+. ......|+|++|.....++.+. .+ .....+..++.+ ....+++.|.+++.+|.+..+...
T Consensus 80 r~~~~~~~~~~g-l~a~~eGd~~~A~k~l~~~~~~----~~--~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~ 152 (398)
T PRK10747 80 KRRRARKQTEQA-LLKLAEGDYQQVEKLMTRNADH----AE--QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQ 152 (398)
T ss_pred HHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHhc----cc--chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcch
Confidence 334444444444 3444579999998666654443 11 124456666777 455599999999999986544332
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992 107 RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (289)
Q Consensus 107 ~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 179 (289)
- + .....+.++...|++++|+..+++..+..+... .++..++.+|...|++++|++.+.+..
T Consensus 153 ~----~-~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~------~al~ll~~~~~~~gdw~~a~~~l~~l~ 214 (398)
T PRK10747 153 L----P-VEITRVRIQLARNENHAARHGVDKLLEVAPRHP------EVLRLAEQAYIRTGAWSSLLDILPSMA 214 (398)
T ss_pred H----H-HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1 1 222337888888999999999999988876542 578889999999999999998777664
No 131
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.14 E-value=8.5e-05 Score=71.82 Aligned_cols=158 Identities=17% Similarity=0.284 Sum_probs=109.7
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhc
Q 022992 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE 166 (289)
Q Consensus 87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 166 (289)
+...|...+-+|+.+.. ..|.++.-+|.+|...-+...|..+|.+|.++...+ .....-+++.|....
T Consensus 473 ~~~~al~ali~alrld~------~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatd------aeaaaa~adtyae~~ 540 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDV------SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATD------AEAAAASADTYAEES 540 (1238)
T ss_pred hHHHHHHHHHHHHhccc------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh------hhhHHHHHHHhhccc
Confidence 55666777777766644 356688889999988788889999999998875532 234566788889999
Q ss_pred CHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccC
Q 022992 167 QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEED 246 (289)
Q Consensus 167 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d 246 (289)
+++.|..+.-.+..... ....+..+...|..|+..++..+|+.-|+.++.++|. ....-..|+.+|-.
T Consensus 541 ~we~a~~I~l~~~qka~-----a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-----D~n~W~gLGeAY~~-- 608 (1238)
T KOG1127|consen 541 TWEEAFEICLRAAQKAP-----AFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-----DYNLWLGLGEAYPE-- 608 (1238)
T ss_pred cHHHHHHHHHHHhhhch-----HHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-----hHHHHHHHHHHHHh--
Confidence 99999888554432211 1223344556788888888888888888888877664 23445667887742
Q ss_pred HHHHHHHHHhccccCCCchhHH
Q 022992 247 IAKFTDVVKEFDSMTPLDPWKT 268 (289)
Q Consensus 247 ~~~~~~al~~~~~~~~~d~~~~ 268 (289)
...+..|++.|.....++|...
T Consensus 609 sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 609 SGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred cCceehHHHhhhhhHhcCcHhH
Confidence 2456678888877777766544
No 132
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.13 E-value=9e-05 Score=55.25 Aligned_cols=99 Identities=15% Similarity=0.085 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchH
Q 022992 73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSA 151 (289)
Q Consensus 73 a~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~ 151 (289)
...++.-|....+. +++.|++.|.+|+.+.++.-+ +|+|-+..+.-+|+.++|++-+++|+++.-. ....+
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raS------ayNNRAQa~RLq~~~e~ALdDLn~AleLag~--~trta 114 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCLAPERAS------AYNNRAQALRLQGDDEEALDDLNKALELAGD--QTRTA 114 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchH------hhccHHHHHHHcCChHHHHHHHHHHHHhcCc--cchHH
Confidence 33444445555555 999999999999999886554 8999999999999999999999999998543 34567
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992 152 NQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (289)
Q Consensus 152 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 179 (289)
..++.+-|.+|..+|+-+.|..-|+.+.
T Consensus 115 cqa~vQRg~lyRl~g~dd~AR~DFe~AA 142 (175)
T KOG4555|consen 115 CQAFVQRGLLYRLLGNDDAARADFEAAA 142 (175)
T ss_pred HHHHHHHHHHHHHhCchHHHHHhHHHHH
Confidence 7889999999999999999999999886
No 133
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.11 E-value=0.0035 Score=57.24 Aligned_cols=225 Identities=12% Similarity=0.027 Sum_probs=137.6
Q ss_pred HhhHHHHHHHHHHhhccCC---C------C-CCCHHHHHHHHHHHH---------------HHHHHcCCHHHHHHHHHHH
Q 022992 5 IARAEEFEKKAEKKLNGWG---L------F-GSKYEDAADLFDKAA---------------NSFKLAKSWDKAGATYVKL 59 (289)
Q Consensus 5 ~~~a~~~~~~A~~~~k~~~---~------~-~~~~~~A~~~~~~A~---------------~~~~~~g~~~~A~~~~~~a 59 (289)
.+.|++.+.++.+....+. + . .|+++.|.+.+.++. .++...|+++.|...+.+.
T Consensus 100 ~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l 179 (409)
T TIGR00540 100 YAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKL 179 (409)
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4567777766655543211 1 1 288888888888863 2334478999999888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHH---------------H---Hhc---------------
Q 022992 60 ANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNM---------------F---CDI--------------- 105 (289)
Q Consensus 60 ~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~---------------~---~~~--------------- 105 (289)
.+...+. ..++.-++.++... ++++|.+.+.+.... + ...
T Consensus 180 ~~~~P~~------~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 180 LEMAPRH------KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHhCCCC------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 7775432 12444555555444 666555555544422 0 000
Q ss_pred CCHH---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992 106 GRLS---MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS 182 (289)
Q Consensus 106 g~~~---~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 182 (289)
..+. ........+|..+...|++++|...++++++..+...... -..+ ........++.+.+++.++++....
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~--~~~l--~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS--LPLC--LPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch--hHHH--HHhhhcCCCChHHHHHHHHHHHHhC
Confidence 0111 2456667778888889999999999999999877542211 0112 2222344578899999999887543
Q ss_pred hhccccccchhhHHHHHHHHHHccCCHHHHHHHHHH--HhhcCCCCCCchHHHHHHHHHHHH-cccCHHHH
Q 022992 183 LNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALER--YQDMDPTFSGTREYRLLSDIAASM-DEEDIAKF 250 (289)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~--~~~~~~~~~~~~e~~~l~~l~~a~-~~~d~~~~ 250 (289)
++++ ....+..+|.++...|++++|++.|++ ..+..|. .+. ...++..+ ..|+.+..
T Consensus 330 p~~~-----~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~----~~~--~~~La~ll~~~g~~~~A 389 (409)
T TIGR00540 330 DDKP-----KCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD----AND--LAMAADAFDQAGDKAEA 389 (409)
T ss_pred CCCh-----hHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC----HHH--HHHHHHHHHHcCCHHHH
Confidence 3221 113556788889999999999999995 4544432 222 33566655 36765443
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=0.0026 Score=52.90 Aligned_cols=168 Identities=15% Similarity=0.057 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHH
Q 022992 33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMA 111 (289)
Q Consensus 33 ~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~ 111 (289)
+..|++...+-.-.|+.+-|..|+.+...-+..... ...--|..+.-. .+++|+++|+.-+ ..+|...
T Consensus 52 w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~R------V~~lkam~lEa~~~~~~A~e~y~~lL-----~ddpt~~ 120 (289)
T KOG3060|consen 52 WTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKR------VGKLKAMLLEATGNYKEAIEYYESLL-----EDDPTDT 120 (289)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChh------HHHHHHHHHHHhhchhhHHHHHHHHh-----ccCcchh
Confidence 555666655555566666666666665555422111 111112233322 6667777766554 3455556
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccc
Q 022992 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG 191 (289)
Q Consensus 112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 191 (289)
+-.-.+++.+... |+.-+||+....=++.|..+. +++..++++|+..|+|++|+=+|++.+-..+-+
T Consensus 121 v~~KRKlAilka~-GK~l~aIk~ln~YL~~F~~D~------EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n------ 187 (289)
T KOG3060|consen 121 VIRKRKLAILKAQ-GKNLEAIKELNEYLDKFMNDQ------EAWHELAEIYLSEGDFEKAAFCLEELLLIQPFN------ 187 (289)
T ss_pred HHHHHHHHHHHHc-CCcHHHHHHHHHHHHHhcCcH------HHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCc------
Confidence 6666888877776 999999999999999998654 689999999999999999999999997332111
Q ss_pred hhhHHHHHHHHHHccC---CHHHHHHHHHHHhhcCCC
Q 022992 192 VKGHLLNAGICQLCKG---DVVAITNALERYQDMDPT 225 (289)
Q Consensus 192 ~~~~~~~~~~~~l~~g---d~~~A~~~~~~~~~~~~~ 225 (289)
.-++...+.++.-+| +..-+++.|.+++++.+.
T Consensus 188 -~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~ 223 (289)
T KOG3060|consen 188 -PLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK 223 (289)
T ss_pred -HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH
Confidence 123344454433333 566789999999998874
No 135
>PRK15331 chaperone protein SicA; Provisional
Probab=98.11 E-value=0.00045 Score=53.94 Aligned_cols=100 Identities=13% Similarity=0.102 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccc
Q 022992 109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLL 188 (289)
Q Consensus 109 ~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 188 (289)
...-..+...|--+...|++++|...|+-..-+..- -.+.+..||.++..+++|++|+..|..+......++.
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~------n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~- 106 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFY------NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR- 106 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC-
Confidence 334445556666666679999999999866654322 2357899999999999999999999999755544432
Q ss_pred ccchhhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022992 189 KYGVKGHLLNAGICQLCKGDVVAITNALERYQD 221 (289)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~ 221 (289)
..+.+|.|++..|+...|+.+|..+.+
T Consensus 107 ------p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 107 ------PVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred ------ccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 246789999999999999999998876
No 136
>PLN03077 Protein ECB2; Provisional
Probab=98.07 E-value=0.0029 Score=63.37 Aligned_cols=95 Identities=4% Similarity=0.050 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHH
Q 022992 154 CKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYR 233 (289)
Q Consensus 154 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~ 233 (289)
+++.+...|...|+.++|+++|++.......+. ...+..+...+...|++++|...|+...+... ..+.. .
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd------~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~g-i~P~~--~ 626 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPD------EVTFISLLCACSRSGMVTQGLEYFHSMEEKYS-ITPNL--K 626 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC------cccHHHHHHHHhhcChHHHHHHHHHHHHHHhC-CCCch--H
Confidence 466777778888888888888888763322211 11123333445567888889888887653222 22222 2
Q ss_pred HHHHHHHHH-cccCHHHHHHHHHhc
Q 022992 234 LLSDIAASM-DEEDIAKFTDVVKEF 257 (289)
Q Consensus 234 ~l~~l~~a~-~~~d~~~~~~al~~~ 257 (289)
...-+++++ ..|+++...+.++..
T Consensus 627 ~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 627 HYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 234455555 367766666666654
No 137
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.04 E-value=0.0013 Score=57.06 Aligned_cols=149 Identities=12% Similarity=0.190 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccc----hHHHHHHHHH--HHHHHhcCHHHHHHHHHHHHHHHhhccc
Q 022992 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT----SANQCKQKVA--QYAAELEQYHKSIEIYEEIARQSLNNNL 187 (289)
Q Consensus 114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~----~~~~~~~~l~--~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 187 (289)
.+.+++.++...|+.+.++.-.+.++.+.+...... ....+...|- .-.++.++|.++++.+++.+...+....
T Consensus 225 ~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ 304 (504)
T KOG0624|consen 225 GHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETM 304 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccc
Confidence 455556665555666666666666655544322110 0000111111 1123446666666666666533222111
Q ss_pred cccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccCHHHHHHHHHhccccCCCchhH
Q 022992 188 LKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWK 267 (289)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d~~~~~~al~~~~~~~~~d~~~ 267 (289)
..++ .+..+..|+...|.+.+|+....+.++++|. ...++..-..|+-. -+.+..|+.+|.....+++.+
T Consensus 305 ir~~---~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~-----dv~~l~dRAeA~l~--dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 305 IRYN---GFRVLCTCYREDEQFGEAIQQCKEVLDIDPD-----DVQVLCDRAEAYLG--DEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred eeee---eeheeeecccccCCHHHHHHHHHHHHhcCch-----HHHHHHHHHHHHhh--hHHHHHHHHHHHHHHhcCccc
Confidence 1111 1122345666778888898888888877655 23445555555532 367888888888888888887
Q ss_pred HHHHH
Q 022992 268 TTLLL 272 (289)
Q Consensus 268 ~~~~~ 272 (289)
+....
T Consensus 375 ~~~re 379 (504)
T KOG0624|consen 375 TRARE 379 (504)
T ss_pred HHHHH
Confidence 75543
No 138
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.02 E-value=0.0011 Score=63.23 Aligned_cols=192 Identities=17% Similarity=0.174 Sum_probs=116.8
Q ss_pred CCHHHHHHHHHHHH----------------------------------HHHHHcCCHHHHHHHHHHHHHHHHh------c
Q 022992 27 SKYEDAADLFDKAA----------------------------------NSFKLAKSWDKAGATYVKLANCHLK------L 66 (289)
Q Consensus 27 ~~~~~A~~~~~~A~----------------------------------~~~~~~g~~~~A~~~~~~a~~~~~~------~ 66 (289)
+|...|+++|++++ ......|+.+.|+.+|..|-+.|.. .
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~q 951 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQ 951 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeec
Confidence 67888888888873 2233578889999999888777642 2
Q ss_pred CCHHHHHHHH---------HHHHHHHccC-CHHHHHHHHHHH------HHHHHhcCCHHHHHH--------HHHHHHHHH
Q 022992 67 ESKHEAAQAY---------VDAAHCYKKT-SSNEAISCLEQA------VNMFCDIGRLSMAAR--------YYKEIAELY 122 (289)
Q Consensus 67 ~~~~~aa~~~---------~~~a~~~~~~-~~~~A~~~~~~A------~~~~~~~g~~~~~a~--------~l~~la~~~ 122 (289)
|....+++.- ..+|..|... ++.+|+..|.+| +.+.+.++-.+..+. -+...|.+|
T Consensus 952 Gk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYy 1031 (1416)
T KOG3617|consen 952 GKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYY 1031 (1416)
T ss_pred cCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHH
Confidence 3444333322 2345556555 889999998887 455555554443332 245667788
Q ss_pred HhcC-CHHHHHHHHHHHHHHH------------------hccCccchHHHHHHHHHHHHHHhcCHHHHHHHH------HH
Q 022992 123 ESEH-NIEQTIVFFEKAADMF------------------QNEEVTTSANQCKQKVAQYAAELEQYHKSIEIY------EE 177 (289)
Q Consensus 123 ~~~g-~~~~A~~~y~~A~~~~------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~------~~ 177 (289)
++.| ..+.|+.+|.+|--+. .++=++.+-+..++..++++....+|++|..++ ++
T Consensus 1032 Ee~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~ 1111 (1416)
T KOG3617|consen 1032 EELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSG 1111 (1416)
T ss_pred HHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 8886 8888988887763222 122122333467788888888888898888754 44
Q ss_pred HHHHHhhccc------------------cccchhhHHHHHHHHHHccCCHHHHHHHHHH
Q 022992 178 IARQSLNNNL------------------LKYGVKGHLLNAGICQLCKGDVVAITNALER 218 (289)
Q Consensus 178 a~~~~~~~~~------------------~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~ 218 (289)
++..+.+.+. ..-.....+-.++.+++.+|++..|.+-|-.
T Consensus 1112 AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1112 ALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred HHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 4332222111 0001112344567777788887777655544
No 139
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.01 E-value=0.0026 Score=59.50 Aligned_cols=139 Identities=15% Similarity=0.170 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccc
Q 022992 109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLL 188 (289)
Q Consensus 109 ~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 188 (289)
.....++.-+|..|...|++++|+++.++|++.-+ ...+.+..-|.|+-..|++.+|.+..+.+......+.
T Consensus 191 ~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htP------t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR-- 262 (517)
T PF12569_consen 191 STLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTP------TLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR-- 262 (517)
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH--
Confidence 34456788999999999999999999999998754 3457889999999999999999999999864333331
Q ss_pred ccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-C--chH-HHHHHHHHHHHc-ccCH----HHHHHHHHhccc
Q 022992 189 KYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS-G--TRE-YRLLSDIAASMD-EEDI----AKFTDVVKEFDS 259 (289)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~-~--~~e-~~~l~~l~~a~~-~~d~----~~~~~al~~~~~ 259 (289)
+ .-.+.+...++.|+.+.|.+.+..+..-..... . .-+ ..+....+.++. .|+. ..+....+.|..
T Consensus 263 -y----iNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~ 337 (517)
T PF12569_consen 263 -Y----INSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDD 337 (517)
T ss_pred -H----HHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 1 112334556788999999999888865432211 1 122 466677777774 5552 455555555555
Q ss_pred c
Q 022992 260 M 260 (289)
Q Consensus 260 ~ 260 (289)
+
T Consensus 338 ~ 338 (517)
T PF12569_consen 338 F 338 (517)
T ss_pred H
Confidence 5
No 140
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.99 E-value=0.00012 Score=61.44 Aligned_cols=104 Identities=11% Similarity=0.077 Sum_probs=84.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhh
Q 022992 115 YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKG 194 (289)
Q Consensus 115 l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 194 (289)
+.+.|.-+...|+|..|..-|..=+.-|+.... .++++++||.++..+|+|+.|..+|..+....... -...+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~---~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s----~KApd 216 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY---TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS----PKAPD 216 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc---cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC----CCChH
Confidence 566666666669999999999999998886543 45788999999999999999999999997544322 23567
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992 195 HLLNAGICQLCKGDVVAITNALERYQDMDPT 225 (289)
Q Consensus 195 ~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~ 225 (289)
.++++|.|...+|+.+.|...|+...+..|.
T Consensus 217 allKlg~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 217 ALLKLGVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 8999999999999999999999887764443
No 141
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.98 E-value=0.0016 Score=60.83 Aligned_cols=191 Identities=17% Similarity=0.129 Sum_probs=123.4
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 022992 43 FKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAEL 121 (289)
Q Consensus 43 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~ 121 (289)
+...||...|.....++.+...+.. ..+.-+..+.... ++++|...+.+|.. ..+..+++.+-+.+
T Consensus 594 ~w~agdv~~ar~il~~af~~~pnse------eiwlaavKle~en~e~eraR~llakar~-------~sgTeRv~mKs~~~ 660 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEANPNSE------EIWLAAVKLEFENDELERARDLLAKARS-------ISGTERVWMKSANL 660 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhCCCcH------HHHHHHHHHhhccccHHHHHHHHHHHhc-------cCCcchhhHHHhHH
Confidence 4445666666666666655533211 1222223333333 78888888888765 23456788898998
Q ss_pred HHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHH
Q 022992 122 YESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGI 201 (289)
Q Consensus 122 ~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 201 (289)
...+++.++|++++++++..|+... ..+..+|.++..+++.+.|.+.|......++.. .-.+..+..
T Consensus 661 er~ld~~eeA~rllEe~lk~fp~f~------Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~-------ipLWllLak 727 (913)
T KOG0495|consen 661 ERYLDNVEEALRLLEEALKSFPDFH------KLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS-------IPLWLLLAK 727 (913)
T ss_pred HHHhhhHHHHHHHHHHHHHhCCchH------HHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC-------chHHHHHHH
Confidence 8888999999999999999988644 478899999999999999999987765333221 112333333
Q ss_pred HHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccCH----HHHHHHHHhccccCCC
Q 022992 202 CQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDI----AKFTDVVKEFDSMTPL 263 (289)
Q Consensus 202 ~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d~----~~~~~al~~~~~~~~~ 263 (289)
+--..|...+|+..|+++.--.|.- ....+..+-.-+..|+. ..+..|++.++..+.|
T Consensus 728 leEk~~~~~rAR~ildrarlkNPk~----~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~L 789 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLKNPKN----ALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLL 789 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhcCCCc----chhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchh
Confidence 3334567888888888875544432 22334444444455554 3566778888877765
No 142
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.96 E-value=0.00084 Score=62.42 Aligned_cols=161 Identities=13% Similarity=0.073 Sum_probs=113.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022992 40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI 118 (289)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~l 118 (289)
|..+...|+-++|.++-..++.. ....-.+|+-+|.+++.. ++++|+.||+.|+.+-+.+-+ .|..+
T Consensus 48 GL~L~~lg~~~ea~~~vr~glr~------d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~q------ilrDl 115 (700)
T KOG1156|consen 48 GLTLNCLGKKEEAYELVRLGLRN------DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQ------ILRDL 115 (700)
T ss_pred cchhhcccchHHHHHHHHHHhcc------CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHH------HHHHH
Confidence 34455678888888887777652 223345889999999988 999999999999999877665 88899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhc-cccccchhhHHH
Q 022992 119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN-NLLKYGVKGHLL 197 (289)
Q Consensus 119 a~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~ 197 (289)
+.+..++++++-....=.+-+++.+.. -..+..++..+...|+|..|.++.+......... +...+.....++
T Consensus 116 slLQ~QmRd~~~~~~tr~~LLql~~~~------ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~L 189 (700)
T KOG1156|consen 116 SLLQIQMRDYEGYLETRNQLLQLRPSQ------RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLL 189 (700)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHH
Confidence 999999999998888777777765532 2357778888899999999999998886443211 111122222222
Q ss_pred HHHHHHHccCCHHHHHHHHHH
Q 022992 198 NAGICQLCKGDVVAITNALER 218 (289)
Q Consensus 198 ~~~~~~l~~gd~~~A~~~~~~ 218 (289)
-...++...|....|.+.+..
T Consensus 190 y~n~i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 190 YQNQILIEAGSLQKALEHLLD 210 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHh
Confidence 233455667776666655544
No 143
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.95 E-value=0.00013 Score=68.48 Aligned_cols=117 Identities=11% Similarity=0.076 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhc
Q 022992 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE 166 (289)
Q Consensus 87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 166 (289)
++.++..+++.++++.+-. ..+|...|-+..++++...|.+.|.+++.+.+... ..+++++..|...|
T Consensus 500 ~fs~~~~hle~sl~~nplq------~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~------eaWnNls~ayi~~~ 567 (777)
T KOG1128|consen 500 DFSEADKHLERSLEINPLQ------LGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNA------EAWNNLSTAYIRLK 567 (777)
T ss_pred hHHHHHHHHHHHhhcCccc------hhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCch------hhhhhhhHHHHHHh
Confidence 6677777777777665532 23666777776666777777777777766654432 56677777777777
Q ss_pred CHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhc
Q 022992 167 QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDM 222 (289)
Q Consensus 167 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~ 222 (289)
+-.+|...+.+++.-. ++....+-|-.++-..-|.+++|..++.+-+.+
T Consensus 568 ~k~ra~~~l~EAlKcn-------~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 568 KKKRAFRKLKEALKCN-------YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred hhHHHHHHHHHHhhcC-------CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 7777777777765221 111222333333444556666676666665543
No 144
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.90 E-value=0.00033 Score=66.18 Aligned_cols=144 Identities=15% Similarity=0.080 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCC
Q 022992 29 YEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR 107 (289)
Q Consensus 29 ~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~ 107 (289)
|..-..+.-.++..+...+..+++..|..++..++. ..+..|...|.++... ...+|.++|..|+.+.+..=.
T Consensus 646 ~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~------l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~ 719 (799)
T KOG4162|consen 646 WYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDP------LSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVP 719 (799)
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcch------hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcH
Confidence 334455566678889899999999999999988863 3466777888888665 899999999999999775443
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhc
Q 022992 108 LSMAARYYKEIAELYESEHNIEQTIV--FFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (289)
Q Consensus 108 ~~~~a~~l~~la~~~~~~g~~~~A~~--~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 185 (289)
++..+|.++.+.|+..-|.. ....|+++.+... +++..+|.++..+|+.++|.++|+-++.....+
T Consensus 720 ------s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~------eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 720 ------SMTALAELLLELGSPRLAEKRSLLSDALRLDPLNH------EAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred ------HHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 88899999999999888888 9999999877654 689999999999999999999999998666556
Q ss_pred ccccc
Q 022992 186 NLLKY 190 (289)
Q Consensus 186 ~~~~~ 190 (289)
|+.++
T Consensus 788 PV~pF 792 (799)
T KOG4162|consen 788 PVLPF 792 (799)
T ss_pred Ccccc
Confidence 65444
No 145
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.90 E-value=0.00033 Score=50.02 Aligned_cols=83 Identities=14% Similarity=0.079 Sum_probs=68.4
Q ss_pred HHHHccCCHHHHHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHH
Q 022992 80 AHCYKKTSSNEAISCLEQAVNMFCDIGRLS---MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQ 156 (289)
Q Consensus 80 a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~---~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~ 156 (289)
....+..++.+|++.+.+..+.....++.. ....++.++|.++...|++++|+..+++|+.+.++.++......++.
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~ 85 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALS 85 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 344455589999999999999988877655 66777889999999999999999999999999999998877777777
Q ss_pred HHHHHH
Q 022992 157 KVAQYA 162 (289)
Q Consensus 157 ~l~~~~ 162 (289)
.+..+.
T Consensus 86 ~~~~l~ 91 (94)
T PF12862_consen 86 WLANLL 91 (94)
T ss_pred HHHHHh
Confidence 666554
No 146
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.89 E-value=0.00035 Score=57.76 Aligned_cols=94 Identities=16% Similarity=0.174 Sum_probs=77.8
Q ss_pred CHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc----C---ccchHHHHHHHH
Q 022992 87 SSNEAISCLEQAVNMFCDI-GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE----E---VTTSANQCKQKV 158 (289)
Q Consensus 87 ~~~~A~~~~~~A~~~~~~~-g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~----~---~~~~~~~~~~~l 158 (289)
.+++|++.|..|+-.+... .++...|.++.++|.+|...|+.+....++++|++.|... . .......++.-+
T Consensus 92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLi 171 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLI 171 (214)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHH
Confidence 7889999999999888754 4777899999999999999999877777888887776531 1 223445688899
Q ss_pred HHHHHHhcCHHHHHHHHHHHHH
Q 022992 159 AQYAAELEQYHKSIEIYEEIAR 180 (289)
Q Consensus 159 ~~~~~~~g~~~~A~~~~~~a~~ 180 (289)
|.+..++|++++|++.|.+++.
T Consensus 172 geL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 172 GELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHhCCHHHHHHHHHHHHc
Confidence 9999999999999999999973
No 147
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.86 E-value=5.8e-05 Score=49.70 Aligned_cols=62 Identities=18% Similarity=0.197 Sum_probs=51.2
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992 157 KVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT 225 (289)
Q Consensus 157 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~ 225 (289)
.+|..+...|+|++|++.|++++... ......++.+|.|+..+|++.+|...|+++++..|.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~-------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQD-------PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCS-------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 57889999999999999999997332 123456788999999999999999999999887765
No 148
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.83 E-value=0.0058 Score=57.08 Aligned_cols=225 Identities=16% Similarity=0.160 Sum_probs=140.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHH-------HHhcCCHH--
Q 022992 40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNM-------FCDIGRLS-- 109 (289)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~-------~~~~g~~~-- 109 (289)
+..|...|+.+.|...|++|..+--. -...-+..|-+-|..-.+. +++.|+.+.++|+.+ +-+++.+.
T Consensus 394 aklYe~~~~l~~aRvifeka~~V~y~--~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~ 471 (835)
T KOG2047|consen 394 AKLYENNGDLDDARVIFEKATKVPYK--TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQA 471 (835)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCCcc--chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHH
Confidence 67899999999999999999887432 2334456666666655444 899999999999643 22233332
Q ss_pred ---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcc
Q 022992 110 ---MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNN 186 (289)
Q Consensus 110 ---~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 186 (289)
..-+.|...+.+.+..|-++..-..|.+.+++--. -+++..+.|.++....-+++|.+.|++.+....-
T Consensus 472 rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria------TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~-- 543 (835)
T KOG2047|consen 472 RLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA------TPQIIINYAMFLEEHKYFEESFKAYERGISLFKW-- 543 (835)
T ss_pred HHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC------CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC--
Confidence 23556667777777778888888888888776332 2357789999999999999999999998732211
Q ss_pred ccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccCHHHHHHHHHhccccCC----
Q 022992 187 LLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTP---- 262 (289)
Q Consensus 187 ~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d~~~~~~al~~~~~~~~---- 262 (289)
+..+..-..|+.-..-....-..++|+..|+++++.+|. . .+..+.-+..-+ ..+....+.|+..|+..+.
T Consensus 544 p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp--~--~aKtiyLlYA~l-EEe~GLar~amsiyerat~~v~~ 618 (835)
T KOG2047|consen 544 PNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPP--E--HAKTIYLLYAKL-EEEHGLARHAMSIYERATSAVKE 618 (835)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH--H--HHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHhcCCH
Confidence 111222233333333344444789999999999997762 1 122222222222 2233555555555554432
Q ss_pred ---CchhHHHHHHHHHHhccc
Q 022992 263 ---LDPWKTTLLLRVKEKLKA 280 (289)
Q Consensus 263 ---~d~~~~~~~~~~~~~~~~ 280 (289)
+| .+...|.|.+..+-+
T Consensus 619 a~~l~-myni~I~kaae~yGv 638 (835)
T KOG2047|consen 619 AQRLD-MYNIYIKKAAEIYGV 638 (835)
T ss_pred HHHHH-HHHHHHHHHHHHhCC
Confidence 22 334556666655543
No 149
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.80 E-value=0.00086 Score=51.18 Aligned_cols=89 Identities=17% Similarity=0.143 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccc
Q 022992 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG 191 (289)
Q Consensus 112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 191 (289)
+..+.+-|.-..+.|+|++|++.|+....-++-.. .+.++..+|+.+|...|+|++|+..+++.+..-+..+ .
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~---ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp----~ 82 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGE---YAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP----N 82 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc---ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC----C
Confidence 44556666666667999999999999888777543 3446789999999999999999999999985533322 3
Q ss_pred hhhHHHHHHHHHHccC
Q 022992 192 VKGHLLNAGICQLCKG 207 (289)
Q Consensus 192 ~~~~~~~~~~~~l~~g 207 (289)
+..+++..|+++..+.
T Consensus 83 vdYa~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 83 VDYAYYMRGLSYYEQD 98 (142)
T ss_pred ccHHHHHHHHHHHHHh
Confidence 4456788898887654
No 150
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.80 E-value=0.00049 Score=65.62 Aligned_cols=94 Identities=16% Similarity=0.215 Sum_probs=59.8
Q ss_pred CCHHHHHHHHHHHH----HHHHhcCCHHHH----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc------
Q 022992 86 TSSNEAISCLEQAV----NMFCDIGRLSMA----------ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE------ 145 (289)
Q Consensus 86 ~~~~~A~~~~~~A~----~~~~~~g~~~~~----------a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~------ 145 (289)
.|.+.|+++|+++- ++++-..+.... -..|.=-|.+++..|+.+.|+.+|..|-+.|...
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~q 951 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQ 951 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeec
Confidence 38888888888862 333222111111 1344455888888999999999999998776532
Q ss_pred CccchHH---------HHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992 146 EVTTSAN---------QCKQKVAQYAAELEQYHKSIEIYEEIA 179 (289)
Q Consensus 146 ~~~~~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~a~ 179 (289)
|+...++ .+...||..|...|++.+|+..|.++-
T Consensus 952 Gk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 952 GKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred cCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 2221111 133456677777888888888888773
No 151
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.79 E-value=0.00092 Score=62.96 Aligned_cols=117 Identities=13% Similarity=0.032 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHH
Q 022992 92 ISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS 171 (289)
Q Consensus 92 ~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 171 (289)
-.+|++|.++.... .+++...+|......++++++.++++.++++.+. ...++..+|.+..++++++.|
T Consensus 470 ~s~yEkawElsn~~-----sarA~r~~~~~~~~~~~fs~~~~hle~sl~~npl------q~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 470 PSLYEKAWELSNYI-----SARAQRSLALLILSNKDFSEADKHLERSLEINPL------QLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred hHHHHHHHHHhhhh-----hHHHHHhhccccccchhHHHHHHHHHHHhhcCcc------chhHHHhccHHHHHHhhhHHH
Confidence 47888888887542 3345555666666679999999999999998654 236899999999999999999
Q ss_pred HHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC
Q 022992 172 IEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTF 226 (289)
Q Consensus 172 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~ 226 (289)
.++|...++..+ .....+.|+.-.|+..|+..+|..++.+++....+.
T Consensus 539 v~aF~rcvtL~P-------d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~ 586 (777)
T KOG1128|consen 539 VKAFHRCVTLEP-------DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH 586 (777)
T ss_pred HHHHHHHhhcCC-------CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC
Confidence 999999874432 234567888888999999999999999998866443
No 152
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.79 E-value=0.0008 Score=63.64 Aligned_cols=130 Identities=17% Similarity=0.122 Sum_probs=90.8
Q ss_pred HHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHH
Q 022992 79 AAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQK 157 (289)
Q Consensus 79 ~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~ 157 (289)
++..+... ..++|..|..+|..+++ ..+..+...|.++...|...+|.+.|.-|+.+.+..- .+...
T Consensus 656 aa~~~~~~~~~~~a~~CL~Ea~~~~~------l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv------~s~~A 723 (799)
T KOG4162|consen 656 AADLFLLSGNDDEARSCLLEASKIDP------LSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV------PSMTA 723 (799)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhcch------hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc------HHHHH
Confidence 33344333 44555556665555543 3455777888888888888999999988888766432 46677
Q ss_pred HHHHHHHhcCHHHHHH--HHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992 158 VAQYAAELEQYHKSIE--IYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS 227 (289)
Q Consensus 158 l~~~~~~~g~~~~A~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~ 227 (289)
+|.++...|+-.-|.. .+..++... .....+|+.+|.++..+||..+|.+||..+.++.++-+
T Consensus 724 la~~lle~G~~~la~~~~~L~dalr~d-------p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 724 LAELLLELGSPRLAEKRSLLSDALRLD-------PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHhCCcchHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 8888888887776666 777776332 12356788888888888999999999988877766543
No 153
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.75 E-value=0.00066 Score=63.57 Aligned_cols=139 Identities=15% Similarity=0.035 Sum_probs=95.7
Q ss_pred CCHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC---------CHHHHHHHH
Q 022992 27 SKYEDAADLFDKAANSFKL--AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT---------SSNEAISCL 95 (289)
Q Consensus 27 ~~~~~A~~~~~~A~~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~---------~~~~A~~~~ 95 (289)
+.-..|.++|-++-..+.. .+++..|..+|++|+++-... +.++..++.+|... +...+.+..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~------a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDF------TYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 5557889999988655432 334789999999999885432 33333344444221 123444444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHH
Q 022992 96 EQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIY 175 (289)
Q Consensus 96 ~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 175 (289)
++++.+-....+ +.++.-+|.++...|++++|...|++|+++-+ . ...+..+|.++...|++++|++.|
T Consensus 408 ~~a~al~~~~~~----~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p------s-~~a~~~lG~~~~~~G~~~eA~~~~ 476 (517)
T PRK10153 408 DNIVALPELNVL----PRIYEILAVQALVKGKTDEAYQAINKAIDLEM------S-WLNYVLLGKVYELKGDNRLAADAY 476 (517)
T ss_pred HHhhhcccCcCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------C-HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 444333222222 36777778888878999999999999999863 1 358899999999999999999999
Q ss_pred HHHHHHH
Q 022992 176 EEIARQS 182 (289)
Q Consensus 176 ~~a~~~~ 182 (289)
+++....
T Consensus 477 ~~A~~L~ 483 (517)
T PRK10153 477 STAFNLR 483 (517)
T ss_pred HHHHhcC
Confidence 9997443
No 154
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.73 E-value=0.00014 Score=65.45 Aligned_cols=67 Identities=18% Similarity=0.130 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180 (289)
Q Consensus 111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 180 (289)
-+..+.++|..|...|+|++|+.+|++|+++.+... .+..++.++|.+|..+|++++|+.++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~a---eA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPD---EAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355677777777777777777777777777655431 1113467777777777777777777777763
No 155
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.73 E-value=0.00066 Score=66.69 Aligned_cols=134 Identities=13% Similarity=0.053 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCc---
Q 022992 72 AAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV--- 147 (289)
Q Consensus 72 aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~--- 147 (289)
-..++..+...|... ++++|+..++.+++..+..-. .+.-+|.++.+.++++.+.-. +++.++....+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~------~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSIS------ALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCccee------hHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 345667777777444 888888888877777654333 666666666666666666555 55555554431
Q ss_pred ----------cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHH
Q 022992 148 ----------TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALE 217 (289)
Q Consensus 148 ----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~ 217 (289)
......++..+|.+|-++|++++|...|++++.... ....++.+.+-.+... |.++|...+.
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-------~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-------DNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-------ccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 112225788999999999999999999999985432 2234566677666666 9999999998
Q ss_pred HHhh
Q 022992 218 RYQD 221 (289)
Q Consensus 218 ~~~~ 221 (289)
++..
T Consensus 174 KAV~ 177 (906)
T PRK14720 174 KAIY 177 (906)
T ss_pred HHHH
Confidence 8865
No 156
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.71 E-value=0.00015 Score=48.79 Aligned_cols=58 Identities=17% Similarity=0.295 Sum_probs=50.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992 119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS 182 (289)
Q Consensus 119 a~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 182 (289)
..+|...+++++|++++++++.+.+.. ...+...|.++..+|++++|++.|++++...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDD------PELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCccc------chhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 467788899999999999999997763 2578889999999999999999999998554
No 157
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.0058 Score=54.33 Aligned_cols=153 Identities=12% Similarity=0.079 Sum_probs=109.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhh
Q 022992 115 YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKG 194 (289)
Q Consensus 115 l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 194 (289)
.+.....|.. .+++.|+.+-+++++.-+..- ..+..-|.++..+|+.++|+-.|+.+.... ++.. .
T Consensus 304 fV~~~~l~~~-K~~~rAL~~~eK~I~~~~r~~------~alilKG~lL~~~~R~~~A~IaFR~Aq~La------p~rL-~ 369 (564)
T KOG1174|consen 304 FVHAQLLYDE-KKFERALNFVEKCIDSEPRNH------EALILKGRLLIALERHTQAVIAFRTAQMLA------PYRL-E 369 (564)
T ss_pred hhhhhhhhhh-hhHHHHHHHHHHHhccCcccc------hHHHhccHHHHhccchHHHHHHHHHHHhcc------hhhH-H
Confidence 3333444444 899999999999998755432 467778999999999999999999986221 1111 2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccCHHHHHHHHHhccccCCCchhHHHHHHHH
Q 022992 195 HLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRV 274 (289)
Q Consensus 195 ~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~ 274 (289)
.|..+..||+..|.+.+|.-.-+......+. +. ..+.-++......|+..-+.|-+-++..-++.|.++.-+.++
T Consensus 370 ~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~---sA--~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~ 444 (564)
T KOG1174|consen 370 IYRGLFHSYLAQKRFKEANALANWTIRLFQN---SA--RSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLI 444 (564)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHhhc---ch--hhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHH
Confidence 3455678899999888876665555444333 32 335445544556778788888888888888999999999999
Q ss_pred HHhccccccccC
Q 022992 275 KEKLKAKELEED 286 (289)
Q Consensus 275 ~~~~~~~~~~~~ 286 (289)
++.+...|-.+|
T Consensus 445 AEL~~~Eg~~~D 456 (564)
T KOG1174|consen 445 AELCQVEGPTKD 456 (564)
T ss_pred HHHHHhhCccch
Confidence 999887776655
No 158
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.70 E-value=0.001 Score=59.99 Aligned_cols=118 Identities=19% Similarity=0.164 Sum_probs=93.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022992 40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI 118 (289)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~l 118 (289)
...+...++++.|++.+++..+-. +. ...-++.++... +-.+|++.+.+++...+.. +..|..-
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~-----pe----v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d------~~LL~~Q 240 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERD-----PE----VAVLLARVYLLMNEEVEAIRLLNEALKENPQD------SELLNLQ 240 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcC-----Cc----HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC------HHHHHHH
Confidence 456677888999998888865443 21 233467777555 7789999999999554433 6788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 022992 119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI 178 (289)
Q Consensus 119 a~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 178 (289)
+..+...++++.|+...++|+++.+.. ..++..|+.+|..+|+|++|+-.++..
T Consensus 241 a~fLl~k~~~~lAL~iAk~av~lsP~~------f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 241 AEFLLSKKKYELALEIAKKAVELSPSE------FETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCchh------HHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999999999999999999987753 468999999999999999999887654
No 159
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.70 E-value=0.00044 Score=58.14 Aligned_cols=105 Identities=12% Similarity=0.177 Sum_probs=83.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHH
Q 022992 75 AYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQC 154 (289)
Q Consensus 75 ~~~~~a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~ 154 (289)
.|..+-..|...++..|...|..=+.-|+..- -.++++.=+|.++..+|+++.|...|..++.-++.. ..+++.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~---~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s---~KApda 217 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNST---YTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS---PKAPDA 217 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc---ccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC---CCChHH
Confidence 45555555666678888888877777776432 356678889999999999999999999998866544 457789
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhc
Q 022992 155 KQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (289)
Q Consensus 155 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 185 (289)
+.+||.+..++|+.++|...|++++.+.++.
T Consensus 218 llKlg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 218 LLKLGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 9999999999999999999999998765443
No 160
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.68 E-value=0.00077 Score=54.13 Aligned_cols=125 Identities=18% Similarity=0.208 Sum_probs=93.2
Q ss_pred HHHHHHHHHhhccCCCCCCCHHHHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcc
Q 022992 9 EEFEKKAEKKLNGWGLFGSKYEDAAD---LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK 85 (289)
Q Consensus 9 ~~~~~~A~~~~k~~~~~~~~~~~A~~---~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~ 85 (289)
+.|+.+-++.+.. ..-+++.. -...-|+-+...|+|++|...|..|+++....-. ...+.+|.+-|.+..+
T Consensus 73 EeLmae~E~i~~d-----eek~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~-e~rsIly~Nraaa~iK 146 (271)
T KOG4234|consen 73 EELMAEIEKIFSD-----EEKDKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST-EERSILYSNRAAALIK 146 (271)
T ss_pred HHHHHHHHHhcCc-----HHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH-HHHHHHHhhhHHHHHH
Confidence 4666666666651 12233333 2334477777889999999999999998776533 5556677777878777
Q ss_pred C-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 022992 86 T-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE 145 (289)
Q Consensus 86 ~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~ 145 (289)
+ ..+.||.-+.+|+++.+... +++..-|.+|.+...|++|++-|.+.+++.+..
T Consensus 147 l~k~e~aI~dcsKaiel~pty~------kAl~RRAeayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 147 LRKWESAIEDCSKAIELNPTYE------KALERRAEAYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred hhhHHHHHHHHHhhHhcCchhH------HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence 7 88999999999999977433 478888999999999999999999999887653
No 161
>PRK15331 chaperone protein SicA; Provisional
Probab=97.67 E-value=0.00048 Score=53.76 Aligned_cols=94 Identities=13% Similarity=0.117 Sum_probs=75.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHH
Q 022992 75 AYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQC 154 (289)
Q Consensus 75 ~~~~~a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~ 154 (289)
.|..+=..|..+++++|...|+-.+.+-+-+ .+.+..+|.++...++|++|+..|..|..+...+.. .
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n------~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~------p 107 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYN------PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR------P 107 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC------c
Confidence 4444455566679999999998776654433 347899999999999999999999999988765443 3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992 155 KQKVAQYAAELEQYHKSIEIYEEIAR 180 (289)
Q Consensus 155 ~~~l~~~~~~~g~~~~A~~~~~~a~~ 180 (289)
....|.++..+|+...|..+|+.++.
T Consensus 108 ~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 108 VFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred cchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 57889999999999999999999874
No 162
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.66 E-value=0.00039 Score=64.89 Aligned_cols=142 Identities=11% Similarity=0.099 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccch
Q 022992 72 AAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTS 150 (289)
Q Consensus 72 aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~ 150 (289)
-.+++.-++..|... ++++|+++.++|++.-+ .....+..-|.++...|++.+|.++++.|-.+...+.
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htP------t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR---- 262 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTP------TLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR---- 262 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH----
Confidence 356778889999666 99999999999998854 3456999999999999999999999999998866542
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh--ccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992 151 ANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN--NNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT 225 (289)
Q Consensus 151 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~ 225 (289)
-+-.+.+-.+.+.|++++|.+..........+ ..+...+...+....|.+|...|++..|.+.|......+..
T Consensus 263 --yiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~ 337 (517)
T PF12569_consen 263 --YINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDD 337 (517)
T ss_pred --HHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 23466778889999999999987766321111 11112222333445689999999999998777766554433
No 163
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=0.024 Score=47.37 Aligned_cols=167 Identities=17% Similarity=0.166 Sum_probs=108.9
Q ss_pred HHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHH
Q 022992 75 AYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQ 153 (289)
Q Consensus 75 ~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~ 153 (289)
.|+....+.... +.+-|..|+.+-..-|+.... +..--|..++..|++++|+++|+.-++-.+.+ ...
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~R------V~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~-----~v~ 122 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKR------VGKLKAMLLEATGNYKEAIEYYESLLEDDPTD-----TVI 122 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChh------HHHHHHHHHHHhhchhhHHHHHHHHhccCcch-----hHH
Confidence 445544444443 778888898888777754443 66677888999999999999999887643222 221
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHH
Q 022992 154 CKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYR 233 (289)
Q Consensus 154 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~ 233 (289)
--.+++ +.-.+|+--+||+-...-+...+ .-.++|..+..+|+..|++.+|.=|+++.+-+.|..+ .
T Consensus 123 ~KRKlA-ilka~GK~l~aIk~ln~YL~~F~-------~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~-----l 189 (289)
T KOG3060|consen 123 RKRKLA-ILKAQGKNLEAIKELNEYLDKFM-------NDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNP-----L 189 (289)
T ss_pred HHHHHH-HHHHcCCcHHHHHHHHHHHHHhc-------CcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcH-----H
Confidence 224444 45557777799998877765443 3346788889999999999999999999877666533 2
Q ss_pred HHHHHHHHH-cccCHHHHHHHHHhccccCCCch
Q 022992 234 LLSDIAASM-DEEDIAKFTDVVKEFDSMTPLDP 265 (289)
Q Consensus 234 ~l~~l~~a~-~~~d~~~~~~al~~~~~~~~~d~ 265 (289)
....+++.. -.|-.+.+..+.+-|.+.-.+.|
T Consensus 190 ~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 190 YFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 233444332 23334445555544444444443
No 164
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.64 E-value=0.0041 Score=59.00 Aligned_cols=105 Identities=14% Similarity=0.245 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHccC-CHHHHHHHHHHH------HHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----
Q 022992 73 AQAYVDAAHCYKKT-SSNEAISCLEQA------VNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADM---- 141 (289)
Q Consensus 73 a~~~~~~a~~~~~~-~~~~A~~~~~~A------~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~---- 141 (289)
+..|..+|.+|.+. ++++|++||++- +++.+ .--|......-..-|.-+...|+++.|+.+|-.|-.+
T Consensus 661 ~elydkagdlfeki~d~dkale~fkkgdaf~kaielar-fafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kai 739 (1636)
T KOG3616|consen 661 GELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELAR-FAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAI 739 (1636)
T ss_pred hHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHH-hhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHH
Confidence 34566777777777 888888887653 33321 2233444445555577777778888888887655322
Q ss_pred ---------------HhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 022992 142 ---------------FQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI 178 (289)
Q Consensus 142 ---------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 178 (289)
.....++..+...+-.+++-|...|+|+-|.++|.++
T Consensus 740 eaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc
Confidence 1112222222233344455555566666666665554
No 165
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.63 E-value=0.00013 Score=41.96 Aligned_cols=32 Identities=16% Similarity=0.458 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 022992 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNE 145 (289)
Q Consensus 114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~ 145 (289)
+|.+||.+|...|++++|+++|++++.+.+..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~ 32 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDP 32 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 46778888888888888888888877765544
No 166
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.035 Score=47.00 Aligned_cols=233 Identities=14% Similarity=0.120 Sum_probs=153.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Q 022992 24 LFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFC 103 (289)
Q Consensus 24 ~~~~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~~~~~A~~~~~~A~~~~~ 103 (289)
+-+|+|-+|.+.|.-....|...+.++.|++.....+.++-+.+....++.....+..++.+.++........
T Consensus 17 ~~~~d~Yeahqm~RTl~fR~~~~K~~~~aieL~~~ga~~ffk~~Q~~saaDl~~~~le~~eka~~ad~~~~~a------- 89 (312)
T KOG3024|consen 17 IELGDYYEAHQMYRTLVFRYTRQKAHEDAIELLYDGALCFFKLKQRGSAADLLVLVLEVLEKAEVADSLLKVA------- 89 (312)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhHhHHHHH-------
Confidence 3447999999999999999999999999999988888888877777677777766666665432222222222
Q ss_pred hcCCHHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHHhcc-CccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--
Q 022992 104 DIGRLSMAARYYKEIAELYESEHNIEQ-TIVFFEKAADMFQNE-EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA-- 179 (289)
Q Consensus 104 ~~g~~~~~a~~l~~la~~~~~~g~~~~-A~~~y~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~-- 179 (289)
+++.+....+.-+. -..+.++|++--.+. +.+.+-+..+..+|..+..-+++.+|..+|-..-
T Consensus 90 -------------nl~~ll~e~~~~eper~~~v~raikWS~~~~~~k~G~p~lH~~la~~l~~e~~~~~a~~HFll~~d~ 156 (312)
T KOG3024|consen 90 -------------NLAELLGEADPSEPERKTFVRRAIKWSKEFGEGKYGHPELHALLADKLWTEDNVEEARRHFLLSEDG 156 (312)
T ss_pred -------------HHHHHHhhcCCCccHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcccHHHHHhHhhhcCCh
Confidence 22223222222222 223444555443332 3334455678888888888888888888764331
Q ss_pred --------HHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhh------------cCC------CCCCchHHH
Q 022992 180 --------RQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQD------------MDP------TFSGTREYR 233 (289)
Q Consensus 180 --------~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~------------~~~------~~~~~~e~~ 233 (289)
..... ...+...-..+.++.+=++...+...|...+..|++ ... -+...+.-.
T Consensus 157 s~~a~~ll~y~~~-r~f~~e~d~f~~~aVlq~L~len~~~A~~s~t~yt~~f~~k~~p~~e~~~~~~~k~~~~~~~pllN 235 (312)
T KOG3024|consen 157 SKFAYMLLEYSMS-RGFKSEPDVFYVQAVLQYLCLENDSSAARSFTTYTSMFNMKDFPMDEIKHKAGTKNPFPFEYPLLN 235 (312)
T ss_pred HHHHHHHHHHHhh-cccccCchHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccccchhhcccccccCCCccccchHH
Confidence 00000 111111112344556667777888889999998887 322 112455667
Q ss_pred HHHHHHHHHcccCHHHHHHHHHhccccCCCchhHHHHHHHHHHh
Q 022992 234 LLSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEK 277 (289)
Q Consensus 234 ~l~~l~~a~~~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~ 277 (289)
++.-|+..+..+|...|......|+..-.-|+.....+.||.+.
T Consensus 236 Fl~~Ll~t~~~k~~~~f~~L~~~Y~~slkrd~~~~~~L~~Igel 279 (312)
T KOG3024|consen 236 FLHFLLETIQRKDLPLFLMLRVKYQPSLKRDQAYNEYLDRIGEL 279 (312)
T ss_pred HHHHHHHHHhccccHHHHHHHHHccchhhhhHHHHHHHHHHHHH
Confidence 88889999999999999999999999877888888888888764
No 167
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.018 Score=49.29 Aligned_cols=140 Identities=16% Similarity=0.115 Sum_probs=84.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHH------Hcc-CC-HHHHHHHHHHHHHHHHhcCCH-
Q 022992 39 AANSFKLAKSWDKAGATYVKLANCHLKLESKH-EAAQAYVDAAHC------YKK-TS-SNEAISCLEQAVNMFCDIGRL- 108 (289)
Q Consensus 39 A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~aa~~~~~~a~~------~~~-~~-~~~A~~~~~~A~~~~~~~g~~- 108 (289)
.|-||....+|..|.+||++....+.+...+. =-|.++.+++.. ... .| ..---++.+--..+.-..++.
T Consensus 50 LgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~ 129 (459)
T KOG4340|consen 50 LGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLP 129 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCc
Confidence 46678888888888888888877765443221 123333333211 111 11 110111111111111112221
Q ss_pred -----------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 022992 109 -----------SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEE 177 (289)
Q Consensus 109 -----------~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 177 (289)
...|.++.+.|-+..+.|+++.|+.-|+.|++.- |-.+ -.-.+++-++...|+|..|+++-.+
T Consensus 130 g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs---Gyqp---llAYniALaHy~~~qyasALk~iSE 203 (459)
T KOG4340|consen 130 GSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS---GYQP---LLAYNLALAHYSSRQYASALKHISE 203 (459)
T ss_pred chHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhc---CCCc---hhHHHHHHHHHhhhhHHHHHHHHHH
Confidence 2356677888888888899999999999998862 3222 2447889999999999999999999
Q ss_pred HHHHHhh
Q 022992 178 IARQSLN 184 (289)
Q Consensus 178 a~~~~~~ 184 (289)
++.+.+.
T Consensus 204 IieRG~r 210 (459)
T KOG4340|consen 204 IIERGIR 210 (459)
T ss_pred HHHhhhh
Confidence 9865544
No 168
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.53 E-value=0.0027 Score=59.55 Aligned_cols=123 Identities=13% Similarity=-0.002 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHHHhccCccchHHHHHHHH
Q 022992 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE--------HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKV 158 (289)
Q Consensus 87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~--------g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l 158 (289)
+...|+++|++|+++.+... .++..++.++... .+...+....++++.+-.. +. .+.++.-+
T Consensus 357 ~~~~A~~lle~Ai~ldP~~a------~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~---~~-~~~~~~al 426 (517)
T PRK10153 357 SLNKASDLLEEILKSEPDFT------YAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPEL---NV-LPRIYEIL 426 (517)
T ss_pred HHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccC---cC-ChHHHHHH
Confidence 67899999999999977543 2444444444322 1233444445554443111 11 13567778
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992 159 AQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS 227 (289)
Q Consensus 159 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~ 227 (289)
|.++...|++++|...+++++... . . ...+...|.++...|+.++|.+.++++..+.|..+
T Consensus 427 a~~~~~~g~~~~A~~~l~rAl~L~------p-s-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 427 AVQALVKGKTDEAYQAINKAIDLE------M-S-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcC------C-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 888888999999999999998432 1 1 23566778899999999999999999999998876
No 169
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.52 E-value=0.00018 Score=47.75 Aligned_cols=51 Identities=20% Similarity=0.313 Sum_probs=43.9
Q ss_pred hcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992 124 SEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180 (289)
Q Consensus 124 ~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 180 (289)
..|++++|+.+|++++...+... .+...+|.++...|++++|...++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNP------EARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSH------HHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45999999999999999887643 5778999999999999999999999863
No 170
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=0.031 Score=47.03 Aligned_cols=170 Identities=12% Similarity=0.108 Sum_probs=115.7
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhc
Q 022992 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE 166 (289)
Q Consensus 87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 166 (289)
++.-.++.+.+.++. ++.........+|.+-.+.||.+.|-.+|++.-......+.......+..+.+.++.-.+
T Consensus 192 Ey~iS~d~~~~vi~~-----~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~n 266 (366)
T KOG2796|consen 192 EYVLSVDAYHSVIKY-----YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQN 266 (366)
T ss_pred hhhhhHHHHHHHHHh-----CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheeccc
Confidence 777778888877763 344556788899999999999999999999765544444445566778899999999999
Q ss_pred CHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHc--c
Q 022992 167 QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMD--E 244 (289)
Q Consensus 167 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~--~ 244 (289)
+|-+|...|.++.....+ ...+..+-++|.+-.|+...|.+..+...+++|+..-. | .++.+|...++ .
T Consensus 267 n~a~a~r~~~~i~~~D~~-------~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~-e-s~~~nL~tmyEL~Y 337 (366)
T KOG2796|consen 267 NFAEAHRFFTEILRMDPR-------NAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLH-E-SVLFNLTTMYELEY 337 (366)
T ss_pred chHHHHHHHhhccccCCC-------chhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchh-h-hHHHHHHHHHHHHh
Confidence 999999999998743222 12233456788888899999999999998888875422 2 23444444332 2
Q ss_pred cCHHHHHHHHHhccccCCCchhHHHH
Q 022992 245 EDIAKFTDVVKEFDSMTPLDPWKTTL 270 (289)
Q Consensus 245 ~d~~~~~~al~~~~~~~~~d~~~~~~ 270 (289)
.+...-+.++..+-.-...|+.++.+
T Consensus 338 s~~~~~k~~l~~~ia~~~~d~f~~~c 363 (366)
T KOG2796|consen 338 SRSMQKKQALLEAVAGKEGDSFNTQC 363 (366)
T ss_pred hhhhhHHHHHHHHHhccCCCcccchh
Confidence 22233344444444444455555444
No 171
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.52 E-value=0.004 Score=56.29 Aligned_cols=128 Identities=14% Similarity=0.065 Sum_probs=89.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHH
Q 022992 75 AYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQC 154 (289)
Q Consensus 75 ~~~~~a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~ 154 (289)
-|-.+-..|....+++|...++.-+...++ -...+.-.+.++...++.++|++.+++++..++... -.
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~------N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~------~l 376 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAAQPD------NPYYLELAGDILLEANKAKEAIERLKKALALDPNSP------LL 376 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc------HH
Confidence 333333334444677777777764444332 234677788999999999999999999999877542 35
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022992 155 KQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQD 221 (289)
Q Consensus 155 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~ 221 (289)
..++|..+.+.|++.+|+.++.+.......++ ..|..++..|-.+|+..++..+..+...
T Consensus 377 ~~~~a~all~~g~~~eai~~L~~~~~~~p~dp-------~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 377 QLNLAQALLKGGKPQEAIRILNRYLFNDPEDP-------NGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc-------hHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 68899999999999999999998875443332 2355566777778888777777666544
No 172
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.51 E-value=0.0054 Score=55.79 Aligned_cols=149 Identities=15% Similarity=0.168 Sum_probs=97.4
Q ss_pred HHHHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC----------c-
Q 022992 79 AAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE----------V- 147 (289)
Q Consensus 79 ~a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~----------~- 147 (289)
+-.++++.+++.-++..++|+++.+.+ +.++.-+|.=.. ....+|.++|++|++..+..- .
T Consensus 175 Mq~AWRERnp~aRIkaA~eALei~pdC------AdAYILLAEEeA--~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~ 246 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALEINPDC------ADAYILLAEEEA--STIVEAEELLRQAVKAGEASLGKSQFLQHHGHF 246 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhhh------hHHHhhcccccc--cCHHHHHHHHHHHHHHHHHhhchhhhhhcccch
Confidence 334466668888999999999998743 346665554322 457888888888887655310 0
Q ss_pred --------cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHH
Q 022992 148 --------TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY 219 (289)
Q Consensus 148 --------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~ 219 (289)
......+...+|.+..++|+.++|++.+++.+..... . ..-+...++..+++..+.+.+++..+.+|
T Consensus 247 ~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~--~---~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 247 WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN--L---DNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc--c---chhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 0111235578999999999999999999998743211 1 12234456778889999999999999998
Q ss_pred hhcCCCCCCchHHHHHHHHHHHH
Q 022992 220 QDMDPTFSGTREYRLLSDIAASM 242 (289)
Q Consensus 220 ~~~~~~~~~~~e~~~l~~l~~a~ 242 (289)
.++ ..+.+.....-..|+.+-
T Consensus 322 dDi--~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 322 DDI--SLPKSATICYTAALLKAR 342 (539)
T ss_pred ccc--cCCchHHHHHHHHHHHHH
Confidence 643 233444433333455443
No 173
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.51 E-value=0.004 Score=59.01 Aligned_cols=66 Identities=21% Similarity=0.366 Sum_probs=38.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 022992 98 AVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEE 177 (289)
Q Consensus 98 A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 177 (289)
|+.+.....+...+...+-.++.-|...|+++.|.++|.++- .++....+|.+.|+|+.|.++-++
T Consensus 751 ai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~--------------~~~dai~my~k~~kw~da~kla~e 816 (1636)
T KOG3616|consen 751 AISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD--------------LFKDAIDMYGKAGKWEDAFKLAEE 816 (1636)
T ss_pred hHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc--------------hhHHHHHHHhccccHHHHHHHHHH
Confidence 344444344444455667777888888888888888775541 223334455556666666555443
No 174
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.51 E-value=0.025 Score=45.32 Aligned_cols=130 Identities=13% Similarity=0.135 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHH
Q 022992 90 EAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYH 169 (289)
Q Consensus 90 ~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 169 (289)
+-++-++.-+.-+..+.--.....++..+|..|...|+.+.|+++|.++.+.... +....++...+..+....+++.
T Consensus 14 ~~~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~---~~~~id~~l~~irv~i~~~d~~ 90 (177)
T PF10602_consen 14 EELEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS---PGHKIDMCLNVIRVAIFFGDWS 90 (177)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC---HHHHHHHHHHHHHHHHHhCCHH
Confidence 3344555556666667667788899999999999999999999999998775433 3345577788888999999999
Q ss_pred HHHHHHHHHHHHHhhccccccchhhH-HHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992 170 KSIEIYEEIARQSLNNNLLKYGVKGH-LLNAGICQLCKGDVVAITNALERYQDMDPTFS 227 (289)
Q Consensus 170 ~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~ 227 (289)
....+..++-....... .+....- -.-.|+.++..+++..|...| ++..+.|.
T Consensus 91 ~v~~~i~ka~~~~~~~~--d~~~~nrlk~~~gL~~l~~r~f~~AA~~f---l~~~~t~~ 144 (177)
T PF10602_consen 91 HVEKYIEKAESLIEKGG--DWERRNRLKVYEGLANLAQRDFKEAAELF---LDSLSTFT 144 (177)
T ss_pred HHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHhchHHHHHHHH---HccCcCCC
Confidence 99999999853322211 1111111 122378888899999888877 55555554
No 175
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.51 E-value=0.015 Score=49.16 Aligned_cols=247 Identities=12% Similarity=0.135 Sum_probs=131.9
Q ss_pred CC-CCHHHHHHHHHHHHHHHH--------------------HcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 022992 25 FG-SKYEDAADLFDKAANSFK--------------------LAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCY 83 (289)
Q Consensus 25 ~~-~~~~~A~~~~~~A~~~~~--------------------~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~ 83 (289)
|+ ++|++-.+.|.+....-+ ...+.+--.++|+.-+++.+...+..-.-..-..+|.+|
T Consensus 76 f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~ 155 (440)
T KOG1464|consen 76 FRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLY 155 (440)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhh
Confidence 45 777777777776643322 122334444556666666555444433344445667777
Q ss_pred ccC-CHHHHHHHHHHHHHHHHh-cC--CHH---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHH
Q 022992 84 KKT-SSNEAISCLEQAVNMFCD-IG--RLS---MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQ 156 (289)
Q Consensus 84 ~~~-~~~~A~~~~~~A~~~~~~-~g--~~~---~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~ 156 (289)
... ++.+-...+.+.-.-+.. .| +.. +.-..+.---.+|..+.+..+--..|++|+.+-.....|.....+..
T Consensus 156 fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRE 235 (440)
T KOG1464|consen 156 FDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRE 235 (440)
T ss_pred eeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHH
Confidence 655 444433333333222211 11 111 11222222234555556666666789999988665554443332222
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchh-hHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHH
Q 022992 157 KVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK-GHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLL 235 (289)
Q Consensus 157 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l 235 (289)
-=|-++.+-|+|++|..-|=++....-..+ +..++. --|+.++......| +.-|.. .+ ..-|...+|....
T Consensus 236 CGGKMHlreg~fe~AhTDFFEAFKNYDEsG-spRRttCLKYLVLANMLmkS~-----iNPFDs-QE-AKPyKNdPEIlAM 307 (440)
T KOG1464|consen 236 CGGKMHLREGEFEKAHTDFFEAFKNYDESG-SPRRTTCLKYLVLANMLMKSG-----INPFDS-QE-AKPYKNDPEILAM 307 (440)
T ss_pred cCCccccccchHHHHHhHHHHHHhcccccC-CcchhHHHHHHHHHHHHHHcC-----CCCCcc-cc-cCCCCCCHHHHHH
Confidence 334577888999999887766653221111 111111 11222222222222 011211 11 1124467888889
Q ss_pred HHHHHHHcccCHHHHHHHHHhccccCCCchhHHHHHHHHHHhcc
Q 022992 236 SDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLK 279 (289)
Q Consensus 236 ~~l~~a~~~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~~~ 279 (289)
.+|..++.+.|...|++.++..+...--||..+.-+..+-++++
T Consensus 308 Tnlv~aYQ~NdI~eFE~Il~~~~~~IM~DpFIReh~EdLl~niR 351 (440)
T KOG1464|consen 308 TNLVAAYQNNDIIEFERILKSNRSNIMDDPFIREHIEDLLRNIR 351 (440)
T ss_pred HHHHHHHhcccHHHHHHHHHhhhccccccHHHHHHHHHHHHHHH
Confidence 99999999999999999999977766567887765555555443
No 176
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.50 E-value=0.00026 Score=40.01 Aligned_cols=33 Identities=15% Similarity=0.377 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (289)
Q Consensus 112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~ 144 (289)
|+++.++|.++..+|++++|+.+|++|+++.+.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 467888888888888888888888888887653
No 177
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.45 E-value=0.0034 Score=50.54 Aligned_cols=113 Identities=12% Similarity=0.083 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccccc
Q 022992 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKY 190 (289)
Q Consensus 111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 190 (289)
.+.-+..=|.-+...|+|++|..-|..|+++.+.... ...+-++.+-|.++.+++.++.|+.-+.+++... . .+
T Consensus 94 kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~-e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--p---ty 167 (271)
T KOG4234|consen 94 KADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST-EERSILYSNRAAALIKLRKWESAIEDCSKAIELN--P---TY 167 (271)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH-HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--c---hh
Confidence 3445556667777779999999999999998776543 3445678888889999999999999999887432 1 11
Q ss_pred chhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchH
Q 022992 191 GVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTRE 231 (289)
Q Consensus 191 ~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e 231 (289)
..++.+.+.+|-.+..++.|..-|.+.++.+|+....++
T Consensus 168 --~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~ 206 (271)
T KOG4234|consen 168 --EKALERRAEAYEKMEKYEEALEDYKKILESDPSRREARE 206 (271)
T ss_pred --HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHH
Confidence 123344456676777788888888888888887543333
No 178
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.44 E-value=0.0069 Score=56.24 Aligned_cols=204 Identities=12% Similarity=0.104 Sum_probs=132.3
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCHHHHH--HHHHHHHHHH-cc---C-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022992 46 AKSWDKAGATYVKLANCHLKLESKHEAA--QAYVDAAHCY-KK---T-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI 118 (289)
Q Consensus 46 ~g~~~~A~~~~~~a~~~~~~~~~~~~aa--~~~~~~a~~~-~~---~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~l 118 (289)
.||-+.++....++.+ ......+.... -.|+.....+ -. . +.+.|.+.+......||+. +-.+..-
T Consensus 201 ~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s------~lfl~~~ 273 (468)
T PF10300_consen 201 SGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNS------ALFLFFE 273 (468)
T ss_pred CCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCc------HHHHHHH
Confidence 6888999988888765 33333332211 1222222211 11 2 6778888888888888843 3467888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHH
Q 022992 119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLN 198 (289)
Q Consensus 119 a~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 198 (289)
|.++...|+.++|+++|++|+..-.. .+....-++..++.++.-+.+|++|..+|.+.... +.++..-+.+.
T Consensus 274 gR~~~~~g~~~~Ai~~~~~a~~~q~~--~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~------s~WSka~Y~Y~ 345 (468)
T PF10300_consen 274 GRLERLKGNLEEAIESFERAIESQSE--WKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE------SKWSKAFYAYL 345 (468)
T ss_pred HHHHHHhcCHHHHHHHHHHhccchhh--HHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc------cccHHHHHHHH
Confidence 99999999999999999999853322 23334568999999999999999999999998632 24444445566
Q ss_pred HHHHHHccCCH-------HHHHHHHHHHhhcCCCC--CCchHHHHHHHHHHHHc-ccC--------HHHHHHHHHhcccc
Q 022992 199 AGICQLCKGDV-------VAITNALERYQDMDPTF--SGTREYRLLSDIAASMD-EED--------IAKFTDVVKEFDSM 260 (289)
Q Consensus 199 ~~~~~l~~gd~-------~~A~~~~~~~~~~~~~~--~~~~e~~~l~~l~~a~~-~~d--------~~~~~~al~~~~~~ 260 (289)
.|.|+...|+. .+|...|.+.-...... ...+--.++..-+.-+. .+. .--..+.+--|..+
T Consensus 346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK~~~~~~~~~~~~~d~~~~~p~~El~y~WNg~ 425 (468)
T PF10300_consen 346 AAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRKAQKYEKQAKVDLVDAILVLPALELMYFWNGF 425 (468)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHhcCCCcchhhhhcCHHHHHHHHHhcc
Confidence 78898888888 78888888765443321 12222233434444443 211 23455666677777
Q ss_pred CCCc
Q 022992 261 TPLD 264 (289)
Q Consensus 261 ~~~d 264 (289)
..+.
T Consensus 426 ~~~~ 429 (468)
T PF10300_consen 426 PRMP 429 (468)
T ss_pred ccCC
Confidence 7765
No 179
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.43 E-value=0.00039 Score=62.67 Aligned_cols=65 Identities=12% Similarity=0.028 Sum_probs=30.3
Q ss_pred HHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 022992 74 QAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADM 141 (289)
Q Consensus 74 ~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~ 141 (289)
..+.++|.+|... ++++|+.+|++|+++.+.. ..+..++.++|.+|..+|++++|+.+|++|+++
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~---aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALELNPNP---DEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3444444444443 5555555555555553321 111233455555555555555555555555543
No 180
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.42 E-value=0.016 Score=42.56 Aligned_cols=110 Identities=12% Similarity=0.074 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHccC---CHHHHHHHHHHHHHHHHhcC-----CHH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 022992 71 EAAQAYVDAAHCYKKT---SSNEAISCLEQAVNMFCDIG-----RLS-MAARYYKEIAELYESEHNIEQTIVFFEKAADM 141 (289)
Q Consensus 71 ~aa~~~~~~a~~~~~~---~~~~A~~~~~~A~~~~~~~g-----~~~-~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~ 141 (289)
+.+.+|.-++..-++. .+++|...+++|.++.+..- |.. --+-|+..++..+..+|+|++++..-.+|+.+
T Consensus 5 eVa~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y 84 (144)
T PF12968_consen 5 EVAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY 84 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 3455666666665554 78899999999998876542 222 24778999999999999999999999999999
Q ss_pred HhccCccc-----hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992 142 FQNEEVTT-----SANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180 (289)
Q Consensus 142 ~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 180 (289)
|...|..+ ....+..+-+..+..+|+.++|++.|+.+..
T Consensus 85 FNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 85 FNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 87655331 1223445566677889999999999999863
No 181
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.39 E-value=0.0026 Score=48.60 Aligned_cols=85 Identities=18% Similarity=0.187 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchH
Q 022992 152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTRE 231 (289)
Q Consensus 152 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e 231 (289)
...+.+-|.-....|+|++|++.|+.+..+.+. ..+ +..+.+.++-+|...|+++.|...+++++.++|.+....-
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~---g~y-a~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdY 85 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPF---GEY-AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDY 85 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC---Ccc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccH
Confidence 456777888888999999999999999755432 233 2345678889999999999999999999999999986655
Q ss_pred HHHHHHHHH
Q 022992 232 YRLLSDIAA 240 (289)
Q Consensus 232 ~~~l~~l~~ 240 (289)
+....+|..
T Consensus 86 a~Y~~gL~~ 94 (142)
T PF13512_consen 86 AYYMRGLSY 94 (142)
T ss_pred HHHHHHHHH
Confidence 555555543
No 182
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.37 E-value=0.0057 Score=55.20 Aligned_cols=110 Identities=17% Similarity=0.138 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhc
Q 022992 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE 166 (289)
Q Consensus 87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 166 (289)
+++.|+..+++..+..+ .....++.++...++..+|+....+++...+.+ ...+...+.++...+
T Consensus 184 ~~~~ai~lle~L~~~~p---------ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d------~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 184 RYDEAIELLEKLRERDP---------EVAVLLARVYLLMNEEVEAIRLLNEALKENPQD------SELLNLQAEFLLSKK 248 (395)
T ss_pred cHHHHHHHHHHHHhcCC---------cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcC
Confidence 77888888877554432 245567888888889999999999999655443 567888999999999
Q ss_pred CHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHH
Q 022992 167 QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALER 218 (289)
Q Consensus 167 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~ 218 (289)
+++.|+++.+++....+. ....|..++.||...||++.|.-+++-
T Consensus 249 ~~~lAL~iAk~av~lsP~-------~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPS-------EFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred CHHHHHHHHHHHHHhCch-------hHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 999999999999754322 234578899999999999999877764
No 183
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.36 E-value=0.019 Score=53.20 Aligned_cols=69 Identities=19% Similarity=0.238 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---cC------ccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992 113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQN---EE------VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ 181 (289)
Q Consensus 113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~---~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 181 (289)
..+.|.|-++...|+|++|++.+++|+.+.++ .+ .....+.+..+++.++..+|+..+|..+|...+..
T Consensus 176 el~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 176 ELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 45667777777789999999999999766542 11 12345567889999999999999999999988743
No 184
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.35 E-value=0.00053 Score=38.54 Aligned_cols=33 Identities=30% Similarity=0.411 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (289)
Q Consensus 112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~ 144 (289)
|.++..+|.++...|++++|+.+|++|+++.+.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 456778888888888888888888888877653
No 185
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.34 E-value=0.027 Score=46.61 Aligned_cols=96 Identities=15% Similarity=0.133 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHh-------cCCHHHHHHHHHHH
Q 022992 48 SWDKAGATYVKLANCHLKLE-SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCD-------IGRLSMAARYYKEI 118 (289)
Q Consensus 48 ~~~~A~~~~~~a~~~~~~~~-~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~-------~g~~~~~a~~l~~l 118 (289)
.+++|+..|.-|+-++.-.+ ++...|..+.++|=+|+.. +.+....++++|++.|.+ .........++.-+
T Consensus 92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLi 171 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLI 171 (214)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHH
Confidence 34555555555555544322 4445555666666666655 545555555555555443 23345667899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHh
Q 022992 119 AELYESEHNIEQTIVFFEKAADMFQ 143 (289)
Q Consensus 119 a~~~~~~g~~~~A~~~y~~A~~~~~ 143 (289)
|.+....|++++|+.+|.+.+..-.
T Consensus 172 geL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 172 GELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 9999999999999999999987643
No 186
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.30 E-value=0.056 Score=43.08 Aligned_cols=173 Identities=18% Similarity=0.162 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHH
Q 022992 34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAA 112 (289)
Q Consensus 34 ~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a 112 (289)
..+...+..+...+++..+...+...... .........+...+..+... .+..++..+.++.........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 130 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALEL----ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDL----- 130 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhh----hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch-----
Confidence 34445566667777788888877777765 11223344566666666555 677888888888776554411
Q ss_pred HHHHHHHH-HHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccc
Q 022992 113 RYYKEIAE-LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG 191 (289)
Q Consensus 113 ~~l~~la~-~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 191 (289)
.....+. ++...|+++.|+..|.+++...+. ...........+..+...+++++|+..+.++.......
T Consensus 131 -~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------ 200 (291)
T COG0457 131 -AEALLALGALYELGDYEEALELYEKALELDPE---LNELAEALLALGALLEALGRYEEALELLEKALKLNPDD------ 200 (291)
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc------
Confidence 2222222 777779999999999999653221 11233455566666788899999999999887432110
Q ss_pred hhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992 192 VKGHLLNAGICQLCKGDVVAITNALERYQDMDPT 225 (289)
Q Consensus 192 ~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~ 225 (289)
....+..++.++...++...|...+.......+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 201 DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 1234556677777788888899998888776655
No 187
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.028 Score=49.24 Aligned_cols=181 Identities=19% Similarity=0.178 Sum_probs=92.2
Q ss_pred HHHHHHhhc-cCCCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 022992 12 EKKAEKKLN-GWGLFGSKYEDAADLFDKA---------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQA 75 (289)
Q Consensus 12 ~~~A~~~~k-~~~~~~~~~~~A~~~~~~A---------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~ 75 (289)
.++|.|+=+ -.++-+-||..|+.+.+-. +.|+...|+|++|++.|.-+..- .+ .-+..
T Consensus 20 ~kkarK~P~Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~----~~--~~~el 93 (557)
T KOG3785|consen 20 IKKARKMPELEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK----DD--APAEL 93 (557)
T ss_pred chhhhcCchHHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc----CC--CCccc
Confidence 455555544 1122236777777776654 34455566666665555544331 11 11223
Q ss_pred HHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHH
Q 022992 76 YVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQC 154 (289)
Q Consensus 76 ~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~ 154 (289)
..+++-|+.-. .+.+|.. +..+..+.....+.+..++.-+.. ++-+-.|.+.+.-- .+-
T Consensus 94 ~vnLAcc~FyLg~Y~eA~~-------~~~ka~k~pL~~RLlfhlahklnd----Ek~~~~fh~~LqD~---------~Ed 153 (557)
T KOG3785|consen 94 GVNLACCKFYLGQYIEAKS-------IAEKAPKTPLCIRLLFHLAHKLND----EKRILTFHSSLQDT---------LED 153 (557)
T ss_pred chhHHHHHHHHHHHHHHHH-------HHhhCCCChHHHHHHHHHHHHhCc----HHHHHHHHHHHhhh---------HHH
Confidence 34444444333 3333333 333334444444555555444332 22233333332211 122
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992 155 KQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT 225 (289)
Q Consensus 155 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~ 225 (289)
...++.++.-.-.|++||..|.+++... + .+... -..+++||..+.-++-+.+.+..|+..+|.
T Consensus 154 qLSLAsvhYmR~HYQeAIdvYkrvL~dn---~--ey~al--NVy~ALCyyKlDYydvsqevl~vYL~q~pd 217 (557)
T KOG3785|consen 154 QLSLASVHYMRMHYQEAIDVYKRVLQDN---P--EYIAL--NVYMALCYYKLDYYDVSQEVLKVYLRQFPD 217 (557)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhcC---h--hhhhh--HHHHHHHHHhcchhhhHHHHHHHHHHhCCC
Confidence 3566777777778899999998886321 1 12221 234578888887777778888888775443
No 188
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.28 E-value=0.19 Score=48.41 Aligned_cols=148 Identities=16% Similarity=0.108 Sum_probs=100.1
Q ss_pred CHHHHHHHHHHHHHHHcc-C-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 022992 68 SKHEAAQAYVDAAHCYKK-T-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE 145 (289)
Q Consensus 68 ~~~~aa~~~~~~a~~~~~-~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~ 145 (289)
.+...+.+..++|.++.. . +++.|..++.++..+..+.+-.+.--.+-.-++.++.+.+... |.....++++.++..
T Consensus 54 ~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~ 132 (608)
T PF10345_consen 54 SPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETY 132 (608)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhcc
Confidence 567889999999999854 4 9999999999999999885555445556666799999855555 999999999999885
Q ss_pred CccchHHHHHHHH-HHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHH--HHHHHHHccCCHHHHHHHHHHHh
Q 022992 146 EVTTSANQCKQKV-AQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLL--NAGICQLCKGDVVAITNALERYQ 220 (289)
Q Consensus 146 ~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~l~~gd~~~A~~~~~~~~ 220 (289)
+...+.- ++.-+ ..+....+++..|++.++.+.......+. .....++ .-+++++..+....+.+.+++..
T Consensus 133 ~~~~w~~-~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d---~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~ 206 (608)
T PF10345_consen 133 GHSAWYY-AFRLLKIQLALQHKDYNAALENLQSIAQLANQRGD---PAVFVLASLSEALLHLRRGSPDDVLELLQRAI 206 (608)
T ss_pred CchhHHH-HHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCC---HHHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Confidence 5544332 22222 23333348999999999999754321111 1111222 22566677776666666666553
No 189
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.28 E-value=0.0078 Score=47.96 Aligned_cols=133 Identities=8% Similarity=0.063 Sum_probs=94.1
Q ss_pred HHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHH
Q 022992 78 DAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQ 156 (289)
Q Consensus 78 ~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~ 156 (289)
.++...++. |++....-..+.+++.+-.- -...+|..+.+.|++.+|..+|++|+.- -...-...+.
T Consensus 61 ~~~~a~~q~ldP~R~~Rea~~~~~~ApTvq-------nr~rLa~al~elGr~~EA~~hy~qalsG-----~fA~d~a~lL 128 (251)
T COG4700 61 TLLMALQQKLDPERHLREATEELAIAPTVQ-------NRYRLANALAELGRYHEAVPHYQQALSG-----IFAHDAAMLL 128 (251)
T ss_pred HHHHHHHHhcChhHHHHHHHHHHhhchhHH-------HHHHHHHHHHHhhhhhhhHHHHHHHhcc-----ccCCCHHHHH
Confidence 334444444 77777666666666655433 3567788888889999999999999853 2222235788
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992 157 KVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS 227 (289)
Q Consensus 157 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~ 227 (289)
.++......+++-.|...+++..... +. .......+-.+.++...|.+.+|+..|+.+.+..|.+.
T Consensus 129 glA~Aqfa~~~~A~a~~tLe~l~e~~---pa--~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ 194 (251)
T COG4700 129 GLAQAQFAIQEFAAAQQTLEDLMEYN---PA--FRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ 194 (251)
T ss_pred HHHHHHHhhccHHHHHHHHHHHhhcC---Cc--cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH
Confidence 89999999999999999999987432 11 12223334456777889999999999999988776653
No 190
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.0031 Score=53.76 Aligned_cols=209 Identities=10% Similarity=0.083 Sum_probs=117.9
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHH--
Q 022992 46 AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM-AARYYKEIAEL-- 121 (289)
Q Consensus 46 ~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~-~a~~l~~la~~-- 121 (289)
-.+|..++++..--.+...+ . -..++.+|.||... ++..|.+||++...++++..+... .|..+.+.+..
T Consensus 23 d~ry~DaI~~l~s~~Er~p~----~--rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~AD 96 (459)
T KOG4340|consen 23 DARYADAIQLLGSELERSPR----S--RAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYAD 96 (459)
T ss_pred HhhHHHHHHHHHHHHhcCcc----c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHH
Confidence 34566666665544433221 1 22566788888777 899999999998888776544321 23333322111
Q ss_pred ----HHhcCCHH---HHHHHHHHHHHHHhcc--Cc-------c-chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Q 022992 122 ----YESEHNIE---QTIVFFEKAADMFQNE--EV-------T-TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN 184 (289)
Q Consensus 122 ----~~~~g~~~---~A~~~y~~A~~~~~~~--~~-------~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 184 (289)
....++.+ +-.-.++.|+...+++ |. + ...+.+.++.|.+..+.|+|+.|++-|+.+....-.
T Consensus 97 ALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy 176 (459)
T KOG4340|consen 97 ALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY 176 (459)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCC
Confidence 11113311 1111233333332211 10 1 234567888999999999999999999999743211
Q ss_pred ccccccchhhHHHHHHHHHHccCCHHHHHHHHH----HHhhcCCCCC-C------------chHHHHHHHHHHH------
Q 022992 185 NNLLKYGVKGHLLNAGICQLCKGDVVAITNALE----RYQDMDPTFS-G------------TREYRLLSDIAAS------ 241 (289)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~----~~~~~~~~~~-~------------~~e~~~l~~l~~a------ 241 (289)
++ ..-+++++||...|++..|.+... +....+|.++ + ..-..-...|..+
T Consensus 177 qp-------llAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaA 249 (459)
T KOG4340|consen 177 QP-------LLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAA 249 (459)
T ss_pred Cc-------hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhh
Confidence 11 123678899999999999876554 4455566654 0 1111112223333
Q ss_pred --HcccCHHHHHHHHHhcccc--CCCchhH
Q 022992 242 --MDEEDIAKFTDVVKEFDSM--TPLDPWK 267 (289)
Q Consensus 242 --~~~~d~~~~~~al~~~~~~--~~~d~~~ 267 (289)
+..+|.+..++++-+.+-. +.+||.-
T Consensus 250 Ieyq~~n~eAA~eaLtDmPPRaE~elDPvT 279 (459)
T KOG4340|consen 250 IEYQLRNYEAAQEALTDMPPRAEEELDPVT 279 (459)
T ss_pred hhhhcccHHHHHHHhhcCCCcccccCCchh
Confidence 2467778888888776544 3356643
No 191
>PRK11906 transcriptional regulator; Provisional
Probab=97.23 E-value=0.031 Score=50.83 Aligned_cols=135 Identities=10% Similarity=0.119 Sum_probs=94.7
Q ss_pred CHHHHHHHHHHHH---HHHHhcCCHHHHHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHHHhccCccchHHHH
Q 022992 87 SSNEAISCLEQAV---NMFCDIGRLSMAARYYKEIAELYES---------EHNIEQTIVFFEKAADMFQNEEVTTSANQC 154 (289)
Q Consensus 87 ~~~~A~~~~~~A~---~~~~~~g~~~~~a~~l~~la~~~~~---------~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~ 154 (289)
+...|..++.+|+ ++-+. -+.++--++.++.. ..+..+|.++-++|+++.+.+. .+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~------~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da------~a 340 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTL------KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG------KI 340 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcc------cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH------HH
Confidence 6778888899988 44332 22344444444433 2456788889999999876553 57
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHH
Q 022992 155 KQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRL 234 (289)
Q Consensus 155 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~ 234 (289)
+..+|.++...++++.|+..|+++.... + +....++..|.++...|+.+.|.+.+++++.+.|.-. .+.+
T Consensus 341 ~~~~g~~~~~~~~~~~a~~~f~rA~~L~--P-----n~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~---~~~~ 410 (458)
T PRK11906 341 LAIMGLITGLSGQAKVSHILFEQAKIHS--T-----DIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR---KAVV 410 (458)
T ss_pred HHHHHHHHHhhcchhhHHHHHHHHhhcC--C-----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh---HHHH
Confidence 8899999999999999999999997432 1 2334455667777788999999999999988876532 3345
Q ss_pred HHHHHHHHc
Q 022992 235 LSDIAASMD 243 (289)
Q Consensus 235 l~~l~~a~~ 243 (289)
+...++.|.
T Consensus 411 ~~~~~~~~~ 419 (458)
T PRK11906 411 IKECVDMYV 419 (458)
T ss_pred HHHHHHHHc
Confidence 555555664
No 192
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=97.23 E-value=0.0079 Score=50.97 Aligned_cols=92 Identities=22% Similarity=0.227 Sum_probs=84.1
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhc
Q 022992 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE 166 (289)
Q Consensus 87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 166 (289)
.....++++.+|.+.|...+.......+...+|.-|...|++++|+.+|+.+...|+..|.......++..+..+...+|
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 45678999999999999999999999999999999999999999999999999999999988888899999999999999
Q ss_pred CHHHHHHHHHHH
Q 022992 167 QYHKSIEIYEEI 178 (289)
Q Consensus 167 ~~~~A~~~~~~a 178 (289)
+.+..+.+.-+.
T Consensus 233 ~~~~~l~~~leL 244 (247)
T PF11817_consen 233 DVEDYLTTSLEL 244 (247)
T ss_pred CHHHHHHHHHHH
Confidence 999888765443
No 193
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.22 E-value=0.049 Score=51.37 Aligned_cols=66 Identities=14% Similarity=0.085 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992 153 QCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT 225 (289)
Q Consensus 153 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~ 225 (289)
.++.+-+.+...++..++|++++++++.... .....|+..|.++..+++.+.|+.+|...+..+|.
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp-------~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~ 717 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKSFP-------DFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPN 717 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCC-------chHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCC
Confidence 3555555566666666666666666653221 11234455566666666666666666555554444
No 194
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.22 E-value=0.0011 Score=44.60 Aligned_cols=58 Identities=19% Similarity=0.218 Sum_probs=48.2
Q ss_pred HHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992 81 HCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (289)
Q Consensus 81 ~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~ 144 (289)
.+|.+. ++++|+.++++++.+.+.. ...+...|.++...|++++|+..|+++++..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDD------PELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCccc------chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 455555 8999999999999997764 348888999999999999999999999987664
No 195
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.21 E-value=0.018 Score=52.23 Aligned_cols=116 Identities=16% Similarity=0.059 Sum_probs=89.2
Q ss_pred HcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 022992 45 LAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYE 123 (289)
Q Consensus 45 ~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~ 123 (289)
..|.+++|...+...+.... ++ ...+.-++.++... +..+|.+.+++++..++... -...++|..+.
T Consensus 318 ~~~~~d~A~~~l~~L~~~~P--~N----~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~------~l~~~~a~all 385 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQP--DN----PYYLELAGDILLEANKAKEAIERLKKALALDPNSP------LLQLNLAQALL 385 (484)
T ss_pred HhcccchHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc------HHHHHHHHHHH
Confidence 45677777777777444332 22 33556678888776 99999999999999988653 47889999999
Q ss_pred hcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 022992 124 SEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI 178 (289)
Q Consensus 124 ~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 178 (289)
+.|++.+|+..+.+.+.-.+.+ +..|..|+..|..+|+-.+|...+-+.
T Consensus 386 ~~g~~~eai~~L~~~~~~~p~d------p~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 386 KGGKPQEAIRILNRYLFNDPED------PNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred hcCChHHHHHHHHHHhhcCCCC------chHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 9999999999999887655443 257889999999999988887766554
No 196
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.21 E-value=0.1 Score=43.81 Aligned_cols=161 Identities=16% Similarity=0.150 Sum_probs=118.4
Q ss_pred hHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCH
Q 022992 7 RAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKA-----------------ANSFKLAKSWDKAGATYVKLANCHLKLESK 69 (289)
Q Consensus 7 ~a~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A-----------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 69 (289)
-+..|.+++.+.|+. |+|++|++.|+.. +-++...+++++|+....+-+..+....+
T Consensus 33 p~~~LY~~g~~~L~~-----gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n- 106 (254)
T COG4105 33 PASELYNEGLTELQK-----GNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN- 106 (254)
T ss_pred CHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-
Confidence 578899999998884 6999999999987 34566789999999999999988875543
Q ss_pred HHHHHHHHHHHHHHccC------CH---HHHHHHHHHHHHHHHhcCCH-----------HHHHHHHHHHHHHHHhcCCHH
Q 022992 70 HEAAQAYVDAAHCYKKT------SS---NEAISCLEQAVNMFCDIGRL-----------SMAARYYKEIAELYESEHNIE 129 (289)
Q Consensus 70 ~~aa~~~~~~a~~~~~~------~~---~~A~~~~~~A~~~~~~~g~~-----------~~~a~~l~~la~~~~~~g~~~ 129 (289)
+.-++.-.|.++... |. .+|+.-++.-+.-|+...-. ...|..-..+|..|.+.|.+-
T Consensus 107 --~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 107 --ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYV 184 (254)
T ss_pred --hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence 223344444444332 32 45666666666666654321 244666678899999999999
Q ss_pred HHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 022992 130 QTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI 178 (289)
Q Consensus 130 ~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 178 (289)
.|+..+++.++-++... .....+..+...|..+|-.++|-+.-.-+
T Consensus 185 AA~nR~~~v~e~y~~t~---~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 185 AAINRFEEVLENYPDTS---AVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHHHHhcccccc---chHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 99999999999877654 34467888899999999999987765433
No 197
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.21 E-value=0.042 Score=44.01 Aligned_cols=126 Identities=12% Similarity=0.036 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHH
Q 022992 51 KAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIE 129 (289)
Q Consensus 51 ~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~ 129 (289)
+-++-++.-+.-++...-......++..+|..|.+. +.++|+++|.++.+.. -.+......+.++-.+....+++.
T Consensus 14 ~~~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~---~~~~~~id~~l~~irv~i~~~d~~ 90 (177)
T PF10602_consen 14 EELEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYC---TSPGHKIDMCLNVIRVAIFFGDWS 90 (177)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc---CCHHHHHHHHHHHHHHHHHhCCHH
Confidence 334445555555555445566678899999999777 9999999999977653 344455556666666666668999
Q ss_pred HHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992 130 QTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (289)
Q Consensus 130 ~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 179 (289)
.+..+..+|-.+....++....+....--|..+...++|.+|.+.|-++.
T Consensus 91 ~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 91 HVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccC
Confidence 99999999999988877655555555556666777899999999998886
No 198
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.15 E-value=0.01 Score=42.22 Aligned_cols=79 Identities=16% Similarity=0.153 Sum_probs=65.2
Q ss_pred HcCCHHHHHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 022992 45 LAKSWDKAGATYVKLANCHLKLESKH---EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAE 120 (289)
Q Consensus 45 ~~g~~~~A~~~~~~a~~~~~~~~~~~---~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~ 120 (289)
..|++.+|.+.+.+..+.....+... .-..++.++|.++... ++++|+..+++|+.+.+..+|....+.++.-+..
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~~~ 89 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWLAN 89 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 56888888888888888877665543 4555677788887666 9999999999999999999999999999988887
Q ss_pred HHH
Q 022992 121 LYE 123 (289)
Q Consensus 121 ~~~ 123 (289)
+..
T Consensus 90 l~~ 92 (94)
T PF12862_consen 90 LLK 92 (94)
T ss_pred Hhh
Confidence 765
No 199
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.15 E-value=0.0087 Score=51.96 Aligned_cols=162 Identities=15% Similarity=0.195 Sum_probs=99.3
Q ss_pred HHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHH
Q 022992 79 AAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQK 157 (289)
Q Consensus 79 ~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~ 157 (289)
+|.++... ++++|++.+.+. ++. .+..-.-.++...++++.|...++..-++.+. .++.+
T Consensus 108 ~A~i~~~~~~~~~AL~~l~~~-------~~l----E~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD--------~~l~q 168 (290)
T PF04733_consen 108 AATILFHEGDYEEALKLLHKG-------GSL----ELLALAVQILLKMNRPDLAEKELKNMQQIDED--------SILTQ 168 (290)
T ss_dssp HHHHHCCCCHHHHHHCCCTTT-------TCH----HHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCC--------HHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcc-------Ccc----cHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--------HHHHH
Confidence 34445443 666666665432 222 23344556777789999999888776554221 35566
Q ss_pred HHHHHH--Hhc--CHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHH
Q 022992 158 VAQYAA--ELE--QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYR 233 (289)
Q Consensus 158 l~~~~~--~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~ 233 (289)
++..++ ..| .+.+|.-+|++..... + .....+...+.|++.+|++++|.+.+..++..++. ...
T Consensus 169 La~awv~l~~g~e~~~~A~y~f~El~~~~---~----~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-----~~d 236 (290)
T PF04733_consen 169 LAEAWVNLATGGEKYQDAFYIFEELSDKF---G----STPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-----DPD 236 (290)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHCCS---------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-----HHH
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhcc---C----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-----CHH
Confidence 665444 344 6999999999975211 0 12233455678999999999999999998765543 234
Q ss_pred HHHHHHHHH-cccCH-HHHHHHHHhccccCCCchhHHHHH
Q 022992 234 LLSDIAASM-DEEDI-AKFTDVVKEFDSMTPLDPWKTTLL 271 (289)
Q Consensus 234 ~l~~l~~a~-~~~d~-~~~~~al~~~~~~~~~d~~~~~~~ 271 (289)
++.+++... ..|+. +..++.+.......+.-||....-
T Consensus 237 ~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~ 276 (290)
T PF04733_consen 237 TLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDLA 276 (290)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHHH
Confidence 566666544 35665 667777777776766656655443
No 200
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.14 E-value=0.0014 Score=43.36 Aligned_cols=56 Identities=25% Similarity=0.365 Sum_probs=44.1
Q ss_pred HHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992 163 AELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT 225 (289)
Q Consensus 163 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~ 225 (289)
...|+|++|++.|++++...+++ ....+.++.|++..|++++|...+++.....|.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDN-------PEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTS-------HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hhccCHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 56899999999999998654332 345667899999999999999999988776554
No 201
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.13 E-value=0.027 Score=47.19 Aligned_cols=126 Identities=13% Similarity=0.237 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHH
Q 022992 153 QCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREY 232 (289)
Q Consensus 153 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~ 232 (289)
..+.+-|......|+|++|++.|+.+..+. +.+.+. ....+..+-++...++++.|+..++++..+.|..+...-.
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~---p~s~~~-~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRH---PFSPYS-EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCccc-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 344555555666777888888887775332 222333 2344555666677777888888888887777777666656
Q ss_pred HHHHHHHHHH----cccCH-------HHHHHHHHhccccCCCchhHHHHHHHHHHhcccccc
Q 022992 233 RLLSDIAASM----DEEDI-------AKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKEL 283 (289)
Q Consensus 233 ~~l~~l~~a~----~~~d~-------~~~~~al~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 283 (289)
..+..|..-. ...|+ ..|.+.+.+|+... ..|--..++..+++.|-..++
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~-Ya~dA~~~i~~~~d~LA~~Em 171 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR-YAPDAKARIVKLNDALAGHEM 171 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc-chhhHHHHHHHHHHHHHHHHH
Confidence 6666655433 14444 34444444444443 223334666666666655443
No 202
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.13 E-value=0.062 Score=43.21 Aligned_cols=104 Identities=14% Similarity=0.127 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccc
Q 022992 109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLL 188 (289)
Q Consensus 109 ~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 188 (289)
.=+.-....++..+.+.+++++|+..++.++..-.. ....+-+-.+|+.+...+|.+++|+..+......
T Consensus 86 ~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D---e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~------- 155 (207)
T COG2976 86 IYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKD---ENLKALAALRLARVQLQQKKADAALKTLDTIKEE------- 155 (207)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchh---HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-------
Confidence 334455667788888889999999999999865322 1223345688999999999999999998765311
Q ss_pred ccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcC
Q 022992 189 KYGVKGHLLNAGICQLCKGDVVAITNALERYQDMD 223 (289)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~ 223 (289)
.+ ........|-+++..||..+|+..|+++++..
T Consensus 156 ~w-~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 156 SW-AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred cH-HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 01 11112235788889999999999999998865
No 203
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.12 E-value=0.28 Score=47.26 Aligned_cols=213 Identities=15% Similarity=0.062 Sum_probs=140.7
Q ss_pred HhhHHHHHHHHHHhhccCC-CCC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 022992 5 IARAEEFEKKAEKKLNGWG-LFG-SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHC 82 (289)
Q Consensus 5 ~~~a~~~~~~A~~~~k~~~-~~~-~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~ 82 (289)
+++=++|++-|=++|.-.. -|+ +...+|.-.+.-|...+....+++.|..+..|+..+.++.+-.+.--.+..-++.+
T Consensus 30 l~~Y~kLI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i 109 (608)
T PF10345_consen 30 LKQYYKLIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARI 109 (608)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 4455566666667776221 455 55688888888888889999999999999999999998855444444555566888
Q ss_pred HccCCHHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHH
Q 022992 83 YKKTSSNEAISCLEQAVNMFCDIGRLSM-AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQY 161 (289)
Q Consensus 83 ~~~~~~~~A~~~~~~A~~~~~~~g~~~~-~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~ 161 (289)
+.+.++..|...++++++.+...+...- -.--+.++...... +++..|++.++....+....+++.....+...-+.+
T Consensus 110 ~~~~~~~~a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~-~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l 188 (608)
T PF10345_consen 110 YFKTNPKAALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQH-KDYNAALENLQSIAQLANQRGDPAVFVLASLSEALL 188 (608)
T ss_pred HHhcCHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Confidence 8888666699999999999887443221 11112222233233 899999999999999987777766555555555667
Q ss_pred HHHhcCHHHHHHHHHHHHHHHhh----ccccccchhhHHHHH-HHHHHccCCHHHHHHHHHH
Q 022992 162 AAELEQYHKSIEIYEEIARQSLN----NNLLKYGVKGHLLNA-GICQLCKGDVVAITNALER 218 (289)
Q Consensus 162 ~~~~g~~~~A~~~~~~a~~~~~~----~~~~~~~~~~~~~~~-~~~~l~~gd~~~A~~~~~~ 218 (289)
+...+..+++++..+++...... +............-+ ..|++..|++..+...++.
T Consensus 189 ~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~ 250 (608)
T PF10345_consen 189 HLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQ 250 (608)
T ss_pred HhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77778888999999888532221 111011111111112 3456778887666555444
No 204
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.014 Score=48.44 Aligned_cols=121 Identities=16% Similarity=0.155 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc------cCccchH------HHHHHHHHHHHHHhcCHHHHHHHHHH
Q 022992 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQN------EEVTTSA------NQCKQKVAQYAAELEQYHKSIEIYEE 177 (289)
Q Consensus 110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~------~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 177 (289)
.+..++..-|.-+..+|+|.+|...|..|+-..+. .|.+.+. .-.+.+...++...|+|-++++...+
T Consensus 176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se 255 (329)
T KOG0545|consen 176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE 255 (329)
T ss_pred hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence 34556777777888889999999999999877653 3444322 23567888999999999999999999
Q ss_pred HHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC--CchHHHHHHH
Q 022992 178 IARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS--GTREYRLLSD 237 (289)
Q Consensus 178 a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~--~~~e~~~l~~ 237 (289)
++....+ ++ .+++..+.+|...-+..+|.+-|...++++|+.. .++|-.++.+
T Consensus 256 iL~~~~~------nv-KA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~ 310 (329)
T KOG0545|consen 256 ILRHHPG------NV-KAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLEN 310 (329)
T ss_pred HHhcCCc------hH-HHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHH
Confidence 9854322 22 3577778888888889999999999999999875 3555554444
No 205
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.08 E-value=0.018 Score=44.29 Aligned_cols=62 Identities=13% Similarity=0.210 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (289)
Q Consensus 112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 179 (289)
..++..++..+...|++++|+..+++++.+.+-+. .++..+..++...|++.+|++.|++..
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E------~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDE------EAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H------HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45777888888888999999999999999877543 578889999999999999999999885
No 206
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.08 E-value=0.0016 Score=36.56 Aligned_cols=32 Identities=28% Similarity=0.548 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 022992 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQ 143 (289)
Q Consensus 112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~ 143 (289)
++++..+|.++..+|++++|+.+|++++++.+
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 45788888888888888888888888888765
No 207
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.01 E-value=0.0097 Score=51.65 Aligned_cols=158 Identities=18% Similarity=0.186 Sum_probs=96.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 022992 37 DKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYY 115 (289)
Q Consensus 37 ~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l 115 (289)
--+|.++...|++++|+....+. ++ ..+..-...+|... +++.|...++...++ ++- .++
T Consensus 106 ~~~A~i~~~~~~~~~AL~~l~~~-------~~----lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~----~eD----~~l 166 (290)
T PF04733_consen 106 LLAATILFHEGDYEEALKLLHKG-------GS----LELLALAVQILLKMNRPDLAEKELKNMQQI----DED----SIL 166 (290)
T ss_dssp HHHHHHHCCCCHHHHHHCCCTTT-------TC----HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC----SCC----HHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHcc-------Cc----ccHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCc----HHH
Confidence 34456666678888777766543 22 12333345566555 888888777665332 221 234
Q ss_pred HHHHHHHHh--c--CCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccc
Q 022992 116 KEIAELYES--E--HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG 191 (289)
Q Consensus 116 ~~la~~~~~--~--g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 191 (289)
.+++..+.. . +.+.+|...|+...+.+.. ...+++.++.++..+|+|++|.+.+++++... ..
T Consensus 167 ~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~------t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-------~~ 233 (290)
T PF04733_consen 167 TQLAEAWVNLATGGEKYQDAFYIFEELSDKFGS------TPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-------PN 233 (290)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--------CC
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhccCC------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-------cC
Confidence 444444433 2 3689999999886554322 23578899999999999999999999986221 12
Q ss_pred hhhHHHHHHHHHHccCCH-HHHHHHHHHHhhcCCCC
Q 022992 192 VKGHLLNAGICQLCKGDV-VAITNALERYQDMDPTF 226 (289)
Q Consensus 192 ~~~~~~~~~~~~l~~gd~-~~A~~~~~~~~~~~~~~ 226 (289)
....+.+.+.|....|+. +.+.+.+.......|.+
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 234567777777778876 55666776665566654
No 208
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.00 E-value=0.002 Score=36.97 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992 154 CKQKVAQYAAELEQYHKSIEIYEEIAR 180 (289)
Q Consensus 154 ~~~~l~~~~~~~g~~~~A~~~~~~a~~ 180 (289)
++.+||.+|..+|+|++|+++|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 478999999999999999999999763
No 209
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.99 E-value=0.21 Score=44.38 Aligned_cols=99 Identities=9% Similarity=-0.063 Sum_probs=64.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-----------Ccc--------------chHHHHHHHHHHHHHHhcCHH
Q 022992 115 YKEIAELYESEHNIEQTIVFFEKAADMFQNE-----------EVT--------------TSANQCKQKVAQYAAELEQYH 169 (289)
Q Consensus 115 l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~-----------~~~--------------~~~~~~~~~l~~~~~~~g~~~ 169 (289)
...++.-+..+|++++|.+..++++.-.... +++ ...+..+..+|.++.+.+.|.
T Consensus 266 ~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~ 345 (400)
T COG3071 266 VVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWG 345 (400)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHH
Confidence 3345666677799999999888887542210 000 111246677888888888888
Q ss_pred HHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022992 170 KSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQD 221 (289)
Q Consensus 170 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~ 221 (289)
+|-++|+.++... .....+..++.++...|+...|..++++++.
T Consensus 346 kA~~~leaAl~~~--------~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 346 KASEALEAALKLR--------PSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHhcC--------CChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 8888888776321 1223345567777788888888888887764
No 210
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.19 Score=42.49 Aligned_cols=127 Identities=17% Similarity=0.225 Sum_probs=78.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHhhccccccchhhHH
Q 022992 121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL----EQYHKSIEIYEEIARQSLNNNLLKYGVKGHL 196 (289)
Q Consensus 121 ~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 196 (289)
++.+..+.+-|....++..++.+. .++.+|+..++.. +.+..|.-+|++..... .++...+
T Consensus 146 I~lk~~r~d~A~~~lk~mq~ided--------~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~-------~~T~~ll 210 (299)
T KOG3081|consen 146 ILLKMHRFDLAEKELKKMQQIDED--------ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT-------PPTPLLL 210 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHccchH--------HHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc-------CCChHHH
Confidence 334446677777777777666543 4677788877654 57899999999885321 1222334
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHH-HHc-ccCHHHHHHHHHhccccCCCchhH
Q 022992 197 LNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAA-SMD-EEDIAKFTDVVKEFDSMTPLDPWK 267 (289)
Q Consensus 197 ~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~-a~~-~~d~~~~~~al~~~~~~~~~d~~~ 267 (289)
.....||+++|++++|...++.++.-++..+ .+|.+++. +.- ..|.+.-.+-+......++--||.
T Consensus 211 nG~Av~~l~~~~~eeAe~lL~eaL~kd~~dp-----etL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 211 NGQAVCHLQLGRYEEAESLLEEALDKDAKDP-----ETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred ccHHHHHHHhcCHHHHHHHHHHHHhccCCCH-----HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 4456789999999999999999887554432 34555554 333 444455555554444444433343
No 211
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.21 Score=42.61 Aligned_cols=138 Identities=7% Similarity=0.006 Sum_probs=88.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022992 40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT--SSNEAISCLEQAVNMFCDIGRLSMAARYYKE 117 (289)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~--~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~ 117 (289)
+.+|...|++..-.++-...-+.+...-.+ ..+.....+-.-+... .++.-+..+...++...+......--..-.+
T Consensus 52 ~~lyv~~g~~~~l~~~i~~sre~m~~ftk~-k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~K 130 (421)
T COG5159 52 FKLYVSKGDYCSLGDTITSSREAMEDFTKP-KITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECK 130 (421)
T ss_pred HHHHHhcCCcchHHHHHHhhHHHHHHhcch-hHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777776666666666665544322 2233333333333332 6677777777777766665554444445556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 022992 118 IAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI 178 (289)
Q Consensus 118 la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 178 (289)
+.-.+.+.|.|..|+..-.-.+.-+.+.++......++.-=.-+|....+..++-..+..+
T Consensus 131 li~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaA 191 (421)
T COG5159 131 LIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAA 191 (421)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHH
Confidence 6667777799999999988888777777766555556665666777777777777766655
No 212
>PRK11906 transcriptional regulator; Provisional
Probab=96.90 E-value=0.03 Score=50.87 Aligned_cols=167 Identities=10% Similarity=0.037 Sum_probs=108.0
Q ss_pred HHHH--HHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC----------CHHHHHHHH
Q 022992 30 EDAA--DLFDKAANSFKLA--KSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT----------SSNEAISCL 95 (289)
Q Consensus 30 ~~A~--~~~~~A~~~~~~~--g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~----------~~~~A~~~~ 95 (289)
..|+ ++|..+...+... ...+.|..+|.+|..... + ++ +-+.+|--++.|+... +..+|+++.
T Consensus 251 ~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~-l-dp-~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A 327 (458)
T PRK11906 251 KNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSD-I-QT-LKTECYCLLAECHMSLALHGKSELELAAQKALELL 327 (458)
T ss_pred ccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhccc-C-Cc-ccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 3666 6666665443321 235677777888872211 0 11 1133444444444221 567889999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHH
Q 022992 96 EQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIY 175 (289)
Q Consensus 96 ~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 175 (289)
++|+++-+... .++..+|.++...++++.|+..|++|+.+.+. .+.++...|.+..-.|+.++|++..
T Consensus 328 ~rAveld~~Da------~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn------~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 328 DYVSDITTVDG------KILAIMGLITGLSGQAKVSHILFEQAKIHSTD------IASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHHHhcCCCCH------HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc------cHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99988866443 48888888888889999999999999998764 3468899999999999999999999
Q ss_pred HHHHHHHhhccccccchhhHHHHHHH-HHHccCCHHHHHHHHHH
Q 022992 176 EEIARQSLNNNLLKYGVKGHLLNAGI-CQLCKGDVVAITNALER 218 (289)
Q Consensus 176 ~~a~~~~~~~~~~~~~~~~~~~~~~~-~~l~~gd~~~A~~~~~~ 218 (289)
++++... +...+....+..+ .|... -.+.|++.|-+
T Consensus 396 ~~alrLs------P~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 396 DKSLQLE------PRRRKAVVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHhccC------chhhHHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence 9987321 2222222334433 44433 35667776644
No 213
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.88 E-value=0.16 Score=40.39 Aligned_cols=166 Identities=18% Similarity=0.213 Sum_probs=104.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022992 40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI 118 (289)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~l 118 (289)
+..+...+++..+...+.++....... .....+...+ ++... ++++|+.++.+++...+. .......+...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~ 173 (291)
T COG0457 102 GLLLEALGKYEEALELLEKALALDPDP----DLAEALLALG-ALYELGDYEEALELYEKALELDPE---LNELAEALLAL 173 (291)
T ss_pred HHHHHHHhhHHHHHHHHHHHHcCCCCc----chHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCC---ccchHHHHHHh
Confidence 334444445555555555555433221 1111222221 45444 999999999999542211 12344455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHH
Q 022992 119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLN 198 (289)
Q Consensus 119 a~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 198 (289)
+..+...++++.++..+.+++...+.. ....+..++..+...++++.|+..+..+...... ....+..
T Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~ 241 (291)
T COG0457 174 GALLEALGRYEEALELLEKALKLNPDD-----DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-------NAEALYN 241 (291)
T ss_pred hhHHHHhcCHHHHHHHHHHHHhhCccc-----chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-------cHHHHhh
Confidence 555777799999999999999987663 2356788999999999999999999999743211 1122333
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992 199 AGICQLCKGDVVAITNALERYQDMDPT 225 (289)
Q Consensus 199 ~~~~~l~~gd~~~A~~~~~~~~~~~~~ 225 (289)
.+..+...+....+...+.+.....+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 242 LALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 444444667788899898888776654
No 214
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.87 E-value=0.042 Score=40.48 Aligned_cols=99 Identities=15% Similarity=0.130 Sum_probs=68.6
Q ss_pred cCCHHHHHHHHHHHHHHHHhcC------CHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHH-H----HH
Q 022992 46 AKSWDKAGATYVKLANCHLKLE------SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM-A----AR 113 (289)
Q Consensus 46 ~g~~~~A~~~~~~a~~~~~~~~------~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~-~----a~ 113 (289)
.|-|++|...+.+|.++.+..- .....+-++.-++.++..+ ++++++....+|+..|-+-|...+ . +.
T Consensus 22 ~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIa 101 (144)
T PF12968_consen 22 DGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIA 101 (144)
T ss_dssp HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHH
Confidence 3556666667777777765432 1233567788888888777 999999999999999987765421 2 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (289)
Q Consensus 114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~ 144 (289)
+..+-|..+...|+.++|+..|+.|.++..+
T Consensus 102 aVfsra~Al~~~Gr~~eA~~~fr~agEMiaE 132 (144)
T PF12968_consen 102 AVFSRAVALEGLGRKEEALKEFRMAGEMIAE 132 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 4446688888899999999999999998654
No 215
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.037 Score=47.35 Aligned_cols=102 Identities=11% Similarity=0.063 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHhhcccc
Q 022992 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE---QYHKSIEIYEEIARQSLNNNLL 188 (289)
Q Consensus 112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~ 188 (289)
++.|.-+|.+|..+|++..|..-|.+|+++..++ ++++..+|.++.... .-.++...+++++....
T Consensus 156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n------~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~----- 224 (287)
T COG4235 156 AEGWDLLGRAYMALGRASDALLAYRNALRLAGDN------PEILLGLAEALYYQAGQQMTAKARALLRQALALDP----- 224 (287)
T ss_pred chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-----
Confidence 4489999999999999999999999999987653 256778888776542 55778889999974322
Q ss_pred ccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC
Q 022992 189 KYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTF 226 (289)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~ 226 (289)
......+-++..+...||+.+|...++..++..|.-
T Consensus 225 --~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 225 --ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred --ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 122334556777888999999999999998876653
No 216
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.83 E-value=0.088 Score=42.35 Aligned_cols=96 Identities=10% Similarity=0.059 Sum_probs=71.2
Q ss_pred HHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHH
Q 022992 76 YVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQC 154 (289)
Q Consensus 76 ~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~ 154 (289)
...++..+... ++++|...++.++.. ..|...-+-+-.++|.+...+|.+|+|+..+. ......+.+..
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~-------t~~~~~w~~~~ 161 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLD-------TIKEESWAAIV 161 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-------ccccccHHHHH
Confidence 34455555555 999999999988754 23333455566788999988899999888774 33334456666
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992 155 KQKVAQYAAELEQYHKSIEIYEEIARQ 181 (289)
Q Consensus 155 ~~~l~~~~~~~g~~~~A~~~~~~a~~~ 181 (289)
...-|+++...|+-++|...|++++..
T Consensus 162 ~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 162 AELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 778899999999999999999999854
No 217
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.81 E-value=0.0035 Score=36.83 Aligned_cols=34 Identities=18% Similarity=0.333 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 022992 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE 145 (289)
Q Consensus 112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~ 145 (289)
+.++.++|.+|...|++++|..++++++++.+..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 4678888888888888888888888888887654
No 218
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.80 E-value=0.29 Score=42.25 Aligned_cols=133 Identities=19% Similarity=0.254 Sum_probs=92.1
Q ss_pred CCCHHHHHHHHHHHHH------------HHH----HcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC---
Q 022992 26 GSKYEDAADLFDKAAN------------SFK----LAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT--- 86 (289)
Q Consensus 26 ~~~~~~A~~~~~~A~~------------~~~----~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~--- 86 (289)
.+++..+...+..+.. +|. ...+..+|...|..+++. | ......++|.+|...
T Consensus 54 ~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~----g----~~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 54 PPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD----G----LAEALFNLGLMYANGRGV 125 (292)
T ss_pred cccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc----c----cHHHHHhHHHHHhcCCCc
Confidence 4899999999998863 111 133456666666633322 2 234556688888764
Q ss_pred --CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHHHhccCccchHHHHHH
Q 022992 87 --SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH--------NIEQTIVFFEKAADMFQNEEVTTSANQCKQ 156 (289)
Q Consensus 87 --~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g--------~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~ 156 (289)
|+.+|..+|++|... |+... +.+...+|.++.. | +...|+.+|.+|.+.. ...+..
T Consensus 126 ~~d~~~A~~~~~~Aa~~----g~~~a-~~~~~~l~~~~~~-g~~~~~~~~~~~~A~~~~~~aa~~~--------~~~a~~ 191 (292)
T COG0790 126 PLDLVKALKYYEKAAKL----GNVEA-ALAMYRLGLAYLS-GLQALAVAYDDKKALYLYRKAAELG--------NPDAQL 191 (292)
T ss_pred ccCHHHHHHHHHHHHHc----CChhH-HHHHHHHHHHHHc-ChhhhcccHHHHhHHHHHHHHHHhc--------CHHHHH
Confidence 899999999999765 33222 5567778888776 4 3347888888887664 235678
Q ss_pred HHHHHHHH----hcCHHHHHHHHHHHHH
Q 022992 157 KVAQYAAE----LEQYHKSIEIYEEIAR 180 (289)
Q Consensus 157 ~l~~~~~~----~g~~~~A~~~~~~a~~ 180 (289)
.+|.+|.. ..++.+|+..|.++..
T Consensus 192 ~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~ 219 (292)
T COG0790 192 LLGRMYEKGLGVPRDLKKAFRWYKKAAE 219 (292)
T ss_pred HHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 89988864 2499999999999973
No 219
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=0.43 Score=43.66 Aligned_cols=120 Identities=17% Similarity=0.052 Sum_probs=95.6
Q ss_pred HHHhhccCCCCC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHccC--CHHH
Q 022992 15 AEKKLNGWGLFG-SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESK-HEAAQAYVDAAHCYKKT--SSNE 90 (289)
Q Consensus 15 A~~~~k~~~~~~-~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~aa~~~~~~a~~~~~~--~~~~ 90 (289)
+=|++...+-|. |+--+|..-..-...+|...++++.|....++|..+....+.. +.--.++.-++.+|-.. .+..
T Consensus 28 ~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~ 107 (629)
T KOG2300|consen 28 CIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPP 107 (629)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCch
Confidence 334444333355 6667888878778888999999999999999999999999876 45566777788888555 6788
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 022992 91 AISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFE 136 (289)
Q Consensus 91 A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~ 136 (289)
+....++|+++- .+.+....+.+..++.++.-..|++.|++.+.
T Consensus 108 ~KalLrkaiels--q~~p~wsckllfQLaql~~idkD~~sA~elLa 151 (629)
T KOG2300|consen 108 AKALLRKAIELS--QSVPYWSCKLLFQLAQLHIIDKDFPSALELLA 151 (629)
T ss_pred HHHHHHHHHHHh--cCCchhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence 888999999985 46667788899999999999899999999853
No 220
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.69 E-value=0.081 Score=40.64 Aligned_cols=96 Identities=13% Similarity=0.127 Sum_probs=63.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhccC-----cc-----------chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992 119 AELYESEHNIEQTIVFFEKAADMFQNEE-----VT-----------TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS 182 (289)
Q Consensus 119 a~~~~~~g~~~~A~~~y~~A~~~~~~~~-----~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 182 (289)
|......++.+.++..+++++.++++.- .. .....++..++..+...|++++|+..+++++...
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d 92 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD 92 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 4444445788888888888888876421 10 1112456677778889999999999999998543
Q ss_pred hhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022992 183 LNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQD 221 (289)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~ 221 (289)
+. .. ..+..+..++...|+...|.+.|+++..
T Consensus 93 P~------~E-~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 93 PY------DE-EAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp TT-------H-HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CC------CH-HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 21 11 2345566788899999999999998754
No 221
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.69 E-value=0.0044 Score=34.79 Aligned_cols=30 Identities=13% Similarity=0.267 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992 152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQ 181 (289)
Q Consensus 152 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 181 (289)
+.++.++|.++..+|++++|+.+|++++..
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 357899999999999999999999999854
No 222
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.024 Score=49.09 Aligned_cols=115 Identities=16% Similarity=0.157 Sum_probs=95.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 022992 57 VKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFF 135 (289)
Q Consensus 57 ~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y 135 (289)
.+++.....-|.+.+.|..|..=|+-|.+. ++..|+.+|.+.+.. +.+++..-+-+|.|-|-+...+|+|..|+.-.
T Consensus 65 LqslK~da~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~--kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dc 142 (390)
T KOG0551|consen 65 LQSLKADAEEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK--KCADPDLNAVLYTNRAAAQLYLGNYRSALNDC 142 (390)
T ss_pred HHHhhhccccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh--cCCCccHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 344444446688899999999999998777 999999999998765 67888899999999999999999999999999
Q ss_pred HHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992 136 EKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (289)
Q Consensus 136 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 179 (289)
.+|+.+-+.. ..++..=+.++..+.++.+|....++..
T Consensus 143 s~al~~~P~h------~Ka~~R~Akc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 143 SAALKLKPTH------LKAYIRGAKCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHhcCcch------hhhhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 9999875542 2366777888999999999988887765
No 223
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.19 Score=46.84 Aligned_cols=137 Identities=12% Similarity=0.121 Sum_probs=81.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC----------
Q 022992 77 VDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE---------- 146 (289)
Q Consensus 77 ~~~a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~---------- 146 (289)
+.+=..|+...+++|+.+++.. .+ .--.++.--|.++..+|+|++|+..|+.-+.-...+.
T Consensus 84 EKAYc~Yrlnk~Dealk~~~~~----~~-----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a 154 (652)
T KOG2376|consen 84 EKAYCEYRLNKLDEALKTLKGL----DR-----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLA 154 (652)
T ss_pred HHHHHHHHcccHHHHHHHHhcc----cc-----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 4433334544888888887711 00 1123556667777777888888888887643221100
Q ss_pred ---------------ccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh---hccccc---cc--hhhHHHHHHHHH
Q 022992 147 ---------------VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSL---NNNLLK---YG--VKGHLLNAGICQ 203 (289)
Q Consensus 147 ---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~---~~~~~~---~~--~~~~~~~~~~~~ 203 (289)
.+...-+.+++.+.++...|+|.+|++.++.+...+. .+.... +. ..-....+.-++
T Consensus 155 ~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVl 234 (652)
T KOG2376|consen 155 VAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVL 234 (652)
T ss_pred HHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHH
Confidence 1122235678888999999999999999999942221 111100 00 111122344566
Q ss_pred HccCCHHHHHHHHHHHhhc
Q 022992 204 LCKGDVVAITNALERYQDM 222 (289)
Q Consensus 204 l~~gd~~~A~~~~~~~~~~ 222 (289)
..+|+..+|...+...+.-
T Consensus 235 Q~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 235 QLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred HHhcchHHHHHHHHHHHHh
Confidence 6789999999988876653
No 224
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.66 E-value=0.0016 Score=36.86 Aligned_cols=34 Identities=18% Similarity=0.337 Sum_probs=27.8
Q ss_pred HHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHH
Q 022992 134 FFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIE 173 (289)
Q Consensus 134 ~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 173 (289)
+|++|+++.+.+. .+++++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~------~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNA------EAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCH------HHHHHHHHHHHHCcCHHhhcC
Confidence 4788998877643 688999999999999999863
No 225
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.64 E-value=0.53 Score=43.09 Aligned_cols=248 Identities=13% Similarity=0.082 Sum_probs=134.9
Q ss_pred HHHHHhhccCCCCCCCHHHHHHHHHHHHHHHH------------------------------HcCCHHHHHHHHHHHHHH
Q 022992 13 KKAEKKLNGWGLFGSKYEDAADLFDKAANSFK------------------------------LAKSWDKAGATYVKLANC 62 (289)
Q Consensus 13 ~~A~~~~k~~~~~~~~~~~A~~~~~~A~~~~~------------------------------~~g~~~~A~~~~~~a~~~ 62 (289)
.-|.+.+..|.-|+|+ .+|+.+|.+--.-|+ ..|...-+...|++|.+.
T Consensus 158 ~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~ 236 (677)
T KOG1915|consen 158 AGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF 236 (677)
T ss_pred HHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3445555555567777 677777766532222 356666777777777665
Q ss_pred HHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHH----------------HHHhcCCHHHHHHH-----------
Q 022992 63 HLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVN----------------MFCDIGRLSMAARY----------- 114 (289)
Q Consensus 63 ~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~----------------~~~~~g~~~~~a~~----------- 114 (289)
+ |+...+...+..-+..-... .++.|.-.|.=|++ .=++-|+..+.-.+
T Consensus 237 ~---~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~ 313 (677)
T KOG1915|consen 237 L---GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEK 313 (677)
T ss_pred h---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHH
Confidence 4 33333333333333322221 44444444444443 33444665544332
Q ss_pred -----------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC-ccchHHHHHHHHHHHH---HHhcCHHHHHHHHHHHH
Q 022992 115 -----------YKEIAELYESEHNIEQTIVFFEKAADMFQNEE-VTTSANQCKQKVAQYA---AELEQYHKSIEIYEEIA 179 (289)
Q Consensus 115 -----------l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~-~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~a~ 179 (289)
+...-.+....|+.+.-.+.|++|+.-.+... ...+.--++..+-.++ ....+.+.+.+.|+..+
T Consensus 314 ~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l 393 (677)
T KOG1915|consen 314 EVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL 393 (677)
T ss_pred HHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 22233344445899999999999987654422 2233334444444433 25678999999999887
Q ss_pred HHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccCHHHHHHHHHhccc
Q 022992 180 RQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDS 259 (289)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d~~~~~~al~~~~~ 259 (289)
...+-. .+.....++..+.--+.+.+...|++.+..+...+|.-. +...-+.. .-.+..|.+.-+-|..
T Consensus 394 ~lIPHk---kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K------lFk~YIel--ElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 394 DLIPHK---KFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK------LFKGYIEL--ELQLREFDRCRKLYEK 462 (677)
T ss_pred hhcCcc---cchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh------HHHHHHHH--HHHHhhHHHHHHHHHH
Confidence 543222 233333444444444566788999999998887776532 12221111 1113445555555666
Q ss_pred cCCCchhHHHHHHHHH
Q 022992 260 MTPLDPWKTTLLLRVK 275 (289)
Q Consensus 260 ~~~~d~~~~~~~~~~~ 275 (289)
+-..+|.+-..|.+-+
T Consensus 463 fle~~Pe~c~~W~kya 478 (677)
T KOG1915|consen 463 FLEFSPENCYAWSKYA 478 (677)
T ss_pred HHhcChHhhHHHHHHH
Confidence 6666666666665544
No 226
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.041 Score=47.07 Aligned_cols=123 Identities=11% Similarity=0.052 Sum_probs=90.0
Q ss_pred hhHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcc
Q 022992 6 ARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK 85 (289)
Q Consensus 6 ~~a~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~ 85 (289)
++-+.+....+.++.. .|+-.+ -....|.+|...|+++.|...|.+|..+..+. ...+...|.++..
T Consensus 136 ~~~~~l~a~Le~~L~~----nP~d~e---gW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n------~~~~~g~aeaL~~ 202 (287)
T COG4235 136 QEMEALIARLETHLQQ----NPGDAE---GWDLLGRAYMALGRASDALLAYRNALRLAGDN------PEILLGLAEALYY 202 (287)
T ss_pred ccHHHHHHHHHHHHHh----CCCCch---hHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Confidence 4577788888888862 133223 34567889999999999999999999886432 2234444444422
Q ss_pred --C--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCc
Q 022992 86 --T--SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV 147 (289)
Q Consensus 86 --~--~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~ 147 (289)
. +..++...+++|+..-+. ..+++.-+|..+.+.|+|.+|+..++.-++..+.+..
T Consensus 203 ~a~~~~ta~a~~ll~~al~~D~~------~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 203 QAGQQMTAKARALLRQALALDPA------NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred hcCCcccHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 2 778899999999887653 3458888999999999999999999999988776543
No 227
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.48 Score=42.38 Aligned_cols=219 Identities=14% Similarity=0.141 Sum_probs=133.8
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022992 44 KLAKSWDKAGATYVKLANCHLKLES---KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIA 119 (289)
Q Consensus 44 ~~~g~~~~A~~~~~~a~~~~~~~~~---~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la 119 (289)
...+++.+|..+-...+.-....+. ..-+|..|.-+..+|... +...-...+..-+....--++..+.+-..+-+=
T Consensus 137 ~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LL 216 (493)
T KOG2581|consen 137 IDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLL 216 (493)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHH
Confidence 3456778877776655443222221 234677777777777665 544444444444444444457778888888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHH
Q 022992 120 ELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNA 199 (289)
Q Consensus 120 ~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 199 (289)
..|...+.|++|-..-.++. |+...+-...+..+.-+|.+..-+++|..|.+++-.++...++.. ..+......++
T Consensus 217 r~yL~n~lydqa~~lvsK~~--~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~--alGf~q~v~k~ 292 (493)
T KOG2581|consen 217 RNYLHNKLYDQADKLVSKSV--YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA--ALGFRQQVNKL 292 (493)
T ss_pred HHHhhhHHHHHHHHHhhccc--CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh--hhhHHHHHHHH
Confidence 88887788888888777764 454444446778899999999999999999999999875443221 11211112222
Q ss_pred -HHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccCHHHHHHHHHhccccCCCchhHHHHHHHHH
Q 022992 200 -GICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVK 275 (289)
Q Consensus 200 -~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~ 275 (289)
.++.+.+|++++ +..|.+ |....+- .--..|..|...||+..|...+..|...-..|..++ .+.|++
T Consensus 293 ~ivv~ll~geiPe-rs~F~Q-----p~~~ksL--~~Yf~Lt~AVr~gdlkkF~~~leq~k~~f~~D~ty~-LivRLR 360 (493)
T KOG2581|consen 293 MIVVELLLGEIPE-RSVFRQ-----PGMRKSL--RPYFKLTQAVRLGDLKKFNETLEQFKDKFQADGTYT-LIVRLR 360 (493)
T ss_pred HHHHHHHcCCCcc-hhhhcC-----ccHHHHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCCcch-HHHHHH
Confidence 334566777664 222211 1111111 223456778889999999999998876655554443 334443
No 228
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.62 E-value=0.0061 Score=34.02 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992 153 QCKQKVAQYAAELEQYHKSIEIYEEIARQ 181 (289)
Q Consensus 153 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 181 (289)
.++..+|.++..+|++++|+++|++++..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999854
No 229
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.61 E-value=0.26 Score=45.27 Aligned_cols=132 Identities=17% Similarity=0.159 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc----
Q 022992 31 DAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI---- 105 (289)
Q Consensus 31 ~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~---- 105 (289)
.|-+...+|++ ..++..-+..-.+|+++.... +.+|.-++. ... -..+|.++|++|++.-...
T Consensus 170 ~Aq~IMq~AWR----ERnp~aRIkaA~eALei~pdC------AdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s 237 (539)
T PF04184_consen 170 PAQEIMQKAWR----ERNPQARIKAAKEALEINPDC------ADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKS 237 (539)
T ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHHhhhhh------hHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchh
Confidence 44444444443 457777788888888886432 344433221 112 5688888888887665432
Q ss_pred ------CCH---------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHH
Q 022992 106 ------GRL---------SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHK 170 (289)
Q Consensus 106 ------g~~---------~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 170 (289)
|.. .....+-..+|++..++|+.++|++.|+.-++.++... .-.+..+|.+++..+++|.+
T Consensus 238 ~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~----~l~IrenLie~LLelq~Yad 313 (539)
T PF04184_consen 238 QFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLD----NLNIRENLIEALLELQAYAD 313 (539)
T ss_pred hhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccc----hhhHHHHHHHHHHhcCCHHH
Confidence 111 11134556899999999999999999999987776432 23478899999999999999
Q ss_pred HHHHHHHH
Q 022992 171 SIEIYEEI 178 (289)
Q Consensus 171 A~~~~~~a 178 (289)
+...+.+-
T Consensus 314 ~q~lL~kY 321 (539)
T PF04184_consen 314 VQALLAKY 321 (539)
T ss_pred HHHHHHHh
Confidence 99887764
No 230
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.59 E-value=0.16 Score=40.73 Aligned_cols=124 Identities=14% Similarity=0.073 Sum_probs=72.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022992 40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI 118 (289)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~l 118 (289)
++.....|++.+|...|.+++.- -+-+....+..+++..... ++..|...+++..+.-+.-. .......+
T Consensus 96 a~al~elGr~~EA~~hy~qalsG-----~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r----~pd~~Ll~ 166 (251)
T COG4700 96 ANALAELGRYHEAVPHYQQALSG-----IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR----SPDGHLLF 166 (251)
T ss_pred HHHHHHhhhhhhhHHHHHHHhcc-----ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC----CCCchHHH
Confidence 45555667777777777776632 2222233444555554444 66666666665554433222 23345556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992 119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (289)
Q Consensus 119 a~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 179 (289)
|..+..+|.+.+|..-|+.++..++.. ......+..+..+|+.++|-.-|..+.
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ypg~-------~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYPGP-------QARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCCCH-------HHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 666776777777777777777776542 234456667777777777766665554
No 231
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.59 E-value=0.0059 Score=36.70 Aligned_cols=33 Identities=9% Similarity=0.172 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 022992 113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNE 145 (289)
Q Consensus 113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~ 145 (289)
.++..+|..|..+|++++|+..|+++++..+.+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 367788888888899999999999888887654
No 232
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.52 E-value=0.22 Score=46.97 Aligned_cols=186 Identities=12% Similarity=0.101 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH---------HHHHHccC-------CHHHHHHH
Q 022992 31 DAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVD---------AAHCYKKT-------SSNEAISC 94 (289)
Q Consensus 31 ~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~---------~a~~~~~~-------~~~~A~~~ 94 (289)
+...+..-.+..|...|++++|.+.|++++.--....|+...-.+|.. +...-... +++-....
T Consensus 246 q~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~ 325 (835)
T KOG2047|consen 246 QLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMAR 325 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHH
Confidence 444555556778889999999999999998776665565444333321 11000011 33444444
Q ss_pred HHHHHHHHHhcCCHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCH
Q 022992 95 LEQAVNMFCDIGRLSM------AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQY 168 (289)
Q Consensus 95 ~~~A~~~~~~~g~~~~------~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 168 (289)
|+..++.++..-+... -...|.+--.+++ |++.+-+..|.+|+.-..-...+......+..+|.+|...|+.
T Consensus 326 ~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e--~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 326 FESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYE--GNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhc--CChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcH
Confidence 5544433321111111 1112222222332 8899999999999876432222333446788999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022992 169 HKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQD 221 (289)
Q Consensus 169 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~ 221 (289)
+.|..+|+++....-. . --.....+...+..-+...+++.|.+..++++.
T Consensus 404 ~~aRvifeka~~V~y~--~-v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~ 453 (835)
T KOG2047|consen 404 DDARVIFEKATKVPYK--T-VEDLAEVWCAWAEMELRHENFEAALKLMRRATH 453 (835)
T ss_pred HHHHHHHHHhhcCCcc--c-hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc
Confidence 9999999999632100 0 001234555556555666778888888888765
No 233
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=96.37 E-value=0.56 Score=42.96 Aligned_cols=177 Identities=15% Similarity=0.003 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC--CH------HHHHHHHHHHHHHHHh
Q 022992 33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT--SS------NEAISCLEQAVNMFCD 104 (289)
Q Consensus 33 ~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~--~~------~~A~~~~~~A~~~~~~ 104 (289)
-....++|...-..|||+-|..+|.-+..=+..-+.+.-.|.+++-+|.+.... .. ++...+++.|+..|..
T Consensus 208 E~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~ 287 (414)
T PF12739_consen 208 EAQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLK 287 (414)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHh
Confidence 345667889999999999999999999988876666666677777777776444 22 4788899999999988
Q ss_pred c-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh-ccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 022992 105 I-----GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ-NEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI 178 (289)
Q Consensus 105 ~-----g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 178 (289)
. ..+.-+.++....+.++...|.+.+|...+-+.....- ..-.+...+-.+.+++.++ +
T Consensus 288 ~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~---------------~ 352 (414)
T PF12739_consen 288 SALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCY---------------A 352 (414)
T ss_pred hhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhh---------------c
Confidence 3 33457888999999999988999888887777765521 1111111334455555555 0
Q ss_pred HHHHhhcc-cc--cc-chhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992 179 ARQSLNNN-LL--KY-GVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT 225 (289)
Q Consensus 179 ~~~~~~~~-~~--~~-~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~ 225 (289)
. .....+ .. +. ...-.+.-+|.-+...|....|..+|..++.+...
T Consensus 353 ~-~~~~~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 353 S-LRSNRPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG 402 (414)
T ss_pred c-cccCCCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 0 000000 00 01 11122333567788899999999999998876654
No 234
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.35 E-value=1.2 Score=43.80 Aligned_cols=210 Identities=10% Similarity=-0.053 Sum_probs=129.0
Q ss_pred HhhHHHHHHHHHHhhccCCCCC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 022992 5 IARAEEFEKKAEKKLNGWGLFG-SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCY 83 (289)
Q Consensus 5 ~~~a~~~~~~A~~~~k~~~~~~-~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~ 83 (289)
..||..++.+++..++-...+. ++....+. .-.+.+-...|++++|.+....++......- +..-+.++..+|.+.
T Consensus 431 ~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~--aL~a~val~~~~~e~a~~lar~al~~L~~~~-~~~r~~~~sv~~~a~ 507 (894)
T COG2909 431 LAEAETLIARLEHFLKAPMHSRQGDLLAEFQ--ALRAQVALNRGDPEEAEDLARLALVQLPEAA-YRSRIVALSVLGEAA 507 (894)
T ss_pred hHHHHHHHHHHHHHhCcCcccchhhHHHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHhccccc-chhhhhhhhhhhHHH
Confidence 6789999999999988323333 44333332 2234455568999999999999988765543 334456777778877
Q ss_pred cc-CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHHHhccCccch--HHHHHHHH
Q 022992 84 KK-TSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIE--QTIVFFEKAADMFQNEEVTTS--ANQCKQKV 158 (289)
Q Consensus 84 ~~-~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~--~A~~~y~~A~~~~~~~~~~~~--~~~~~~~l 158 (289)
.- +++.+|..+..++..+.+..+.+.-...+....+.++..+|... +...-|..--..+-. ..+.+ ...++..+
T Consensus 508 ~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~-q~~~~~f~~~~r~~l 586 (894)
T COG2909 508 HIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLE-QKPRHEFLVRIRAQL 586 (894)
T ss_pred HHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh-hcccchhHHHHHHHH
Confidence 44 49999999999999999999999999999999999999999322 222222222221111 11111 11222222
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022992 159 AQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQD 221 (289)
Q Consensus 159 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~ 221 (289)
...+. +++.+..-...............+-....+..+..+....||.++|...+.+...
T Consensus 587 l~~~~---r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~ 646 (894)
T COG2909 587 LRAWL---RLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELER 646 (894)
T ss_pred HHHHH---HHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 22332 3666655544443222111111111112223556777889999999888887654
No 235
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.072 Score=46.26 Aligned_cols=115 Identities=13% Similarity=0.079 Sum_probs=84.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 022992 98 AVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEE 177 (289)
Q Consensus 98 A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 177 (289)
++......|.+...|..+..=|.-|....+|..|+.+|.+++.- .-+++...+.+|.+-+.+...+|+|..|+.-..+
T Consensus 67 slK~da~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~--kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~ 144 (390)
T KOG0551|consen 67 SLKADAEEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK--KCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSA 144 (390)
T ss_pred HhhhccccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh--cCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 44555567888889999999999999989999999999999874 4556666677899999999999999999999999
Q ss_pred HHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022992 178 IARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQD 221 (289)
Q Consensus 178 a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~ 221 (289)
+....+ ..++ ++.+-+.|++.+..+..|....+..++
T Consensus 145 al~~~P------~h~K-a~~R~Akc~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 145 ALKLKP------THLK-AYIRGAKCLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHhcCc------chhh-hhhhhhHHHHHHHHHHHHHHHHhhhhh
Confidence 874321 1122 334455677766555555555544433
No 236
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.016 Score=47.99 Aligned_cols=107 Identities=13% Similarity=0.170 Sum_probs=82.8
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcC
Q 022992 28 KYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIG 106 (289)
Q Consensus 28 ~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g 106 (289)
..+..++-...-|+.+.....|+.|+++|.+|+.+... -+..+.+=+.||.+. +++.+..-.++|+++.+
T Consensus 5 ~~s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~------~~~Y~tnralchlk~~~~~~v~~dcrralql~~--- 75 (284)
T KOG4642|consen 5 EMSESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPT------VASYYTNRALCHLKLKHWEPVEEDCRRALQLDP--- 75 (284)
T ss_pred ccchHHHHHHhccccccchhhhchHHHHHHHHHhcCCC------cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcCh---
Confidence 33444455555577777777889999999999877432 245778888888877 88888888999988865
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q 022992 107 RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE 146 (289)
Q Consensus 107 ~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~ 146 (289)
..++...-+|..+.....+++||..+++|..+.+...
T Consensus 76 ---N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~ 112 (284)
T KOG4642|consen 76 ---NLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQP 112 (284)
T ss_pred ---HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCC
Confidence 3566788888888888999999999999999887654
No 237
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.21 E-value=0.034 Score=48.08 Aligned_cols=123 Identities=12% Similarity=0.120 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHh
Q 022992 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES-EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL 165 (289)
Q Consensus 87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~-~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (289)
..+.|...|.+|+. .+. ..-.++...|.+-.. .++.+.|...|++++..|.... ..+....+.+...
T Consensus 16 g~~~aR~vF~~a~~----~~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~------~~~~~Y~~~l~~~ 83 (280)
T PF05843_consen 16 GIEAARKVFKRARK----DKR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDP------DFWLEYLDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHHC----CCC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H------HHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHc----CCC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHh
Confidence 56777777777751 111 122456677777333 4666668888888888876543 4566667777888
Q ss_pred cCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992 166 EQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT 225 (289)
Q Consensus 166 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~ 225 (289)
|+.+.|..+|++++...... ......|.+...--..-||.+...+...++.+..+.
T Consensus 84 ~d~~~aR~lfer~i~~l~~~----~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 84 NDINNARALFERAISSLPKE----KQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp T-HHHHHHHHHHHCCTSSCH----HHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred CcHHHHHHHHHHHHHhcCch----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 88888888888886321110 001222333322233457777777777777666554
No 238
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=96.16 E-value=0.17 Score=42.87 Aligned_cols=92 Identities=14% Similarity=0.055 Sum_probs=81.6
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Q 022992 47 KSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE 125 (289)
Q Consensus 47 g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~ 125 (289)
..-...++.+.+|.+.+.+.+...-.......+|.-|... ++++|+.+++.+...|++.|.......++..+..|....
T Consensus 152 ~hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~ 231 (247)
T PF11817_consen 152 DHSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRL 231 (247)
T ss_pred chHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 3456779999999999999888888888888899998777 999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHH
Q 022992 126 HNIEQTIVFFEKA 138 (289)
Q Consensus 126 g~~~~A~~~y~~A 138 (289)
|+.+..+.+.-+.
T Consensus 232 ~~~~~~l~~~leL 244 (247)
T PF11817_consen 232 GDVEDYLTTSLEL 244 (247)
T ss_pred CCHHHHHHHHHHH
Confidence 9999887765443
No 239
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.14 E-value=0.48 Score=42.41 Aligned_cols=174 Identities=11% Similarity=0.096 Sum_probs=110.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHH
Q 022992 96 EQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIY 175 (289)
Q Consensus 96 ~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 175 (289)
+.=+..++.++-.....+.+..+|.-|...|+.+.|+++|-++-+.....+ .....+.++-.|-+.+|+|..-..+-
T Consensus 134 ~~eLk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~k---hvInm~ln~i~VSI~~~nw~hv~sy~ 210 (466)
T KOG0686|consen 134 DNELKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAK---HVINMCLNLILVSIYMGNWGHVLSYI 210 (466)
T ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchH---HHHHHHHHHHHHHHhhcchhhhhhHH
Confidence 333555666666677788999999999999999999999999877655433 33455667777888899999888888
Q ss_pred HHHHHHHhhc-cc-cccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC--CchHHHHHHHHHHHHcccCHHHHH
Q 022992 176 EEIARQSLNN-NL-LKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS--GTREYRLLSDIAASMDEEDIAKFT 251 (289)
Q Consensus 176 ~~a~~~~~~~-~~-~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~--~~~e~~~l~~l~~a~~~~d~~~~~ 251 (289)
.++....-.. ++ ...+.+ ...-.|++++..+++..|...|-.+.--.-.|+ -++....+...+.|+..-|...+.
T Consensus 211 ~~A~st~~~~~~~~q~v~~k-l~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk 289 (466)
T KOG0686|consen 211 SKAESTPDANENLAQEVPAK-LKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLK 289 (466)
T ss_pred HHHHhCchhhhhHHHhcCcc-hHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHH
Confidence 7775331000 00 011111 223468889988888888777754311111121 244556677777888766766555
Q ss_pred HHH---HhccccCCCchhHHHHHHH
Q 022992 252 DVV---KEFDSMTPLDPWKTTLLLR 273 (289)
Q Consensus 252 ~al---~~~~~~~~~d~~~~~~~~~ 273 (289)
..+ ..|+.+..++|..+.+|.+
T Consensus 290 ~~vi~n~~Fk~flel~Pqlr~il~~ 314 (466)
T KOG0686|consen 290 LNVIKNESFKLFLELEPQLREILFK 314 (466)
T ss_pred HHHHcchhhhhHHhcChHHHHHHHH
Confidence 333 2344455566776655543
No 240
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.07 E-value=1.5 Score=45.33 Aligned_cols=161 Identities=12% Similarity=0.082 Sum_probs=94.3
Q ss_pred HcCCHHHHHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 022992 45 LAKSWDKAGATYVKLANCH--LKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELY 122 (289)
Q Consensus 45 ~~g~~~~A~~~~~~a~~~~--~~~~~~~~aa~~~~~~a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~ 122 (289)
..++.++|...+++|+..- ++-..-...-.+|.|+=+.|. .-+.-.+.|++|+.+.. +-..+..|..+|
T Consensus 1470 elsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG--~eesl~kVFeRAcqycd-------~~~V~~~L~~iy 1540 (1710)
T KOG1070|consen 1470 ELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG--TEESLKKVFERACQYCD-------AYTVHLKLLGIY 1540 (1710)
T ss_pred hhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC--cHHHHHHHHHHHHHhcc-------hHHHHHHHHHHH
Confidence 4677888888888887653 111112233445555555554 22344455666655432 233667777777
Q ss_pred HhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHH
Q 022992 123 ESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGIC 202 (289)
Q Consensus 123 ~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 202 (289)
...+.+++|.++|++-++-|.+ ...+|...+..+...++-+.|..++.+++.-.+ +........+-+..
T Consensus 1541 ~k~ek~~~A~ell~~m~KKF~q------~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP-----k~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1541 EKSEKNDEADELLRLMLKKFGQ------TRKVWIMYADFLLRQNEAEAARELLKRALKSLP-----KQEHVEFISKFAQL 1609 (1710)
T ss_pred HHhhcchhHHHHHHHHHHHhcc------hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc-----hhhhHHHHHHHHHH
Confidence 7777777777777777776652 224677777777777777777777777763221 11122222233444
Q ss_pred HHccCCHHHHHHHHHHHhhcCCC
Q 022992 203 QLCKGDVVAITNALERYQDMDPT 225 (289)
Q Consensus 203 ~l~~gd~~~A~~~~~~~~~~~~~ 225 (289)
-...||.++++..|+..+.-+|.
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPK 1632 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPK 1632 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCcc
Confidence 45667777777777666554443
No 241
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.03 E-value=0.04 Score=48.09 Aligned_cols=98 Identities=13% Similarity=0.113 Sum_probs=70.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhh
Q 022992 115 YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKG 194 (289)
Q Consensus 115 l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 194 (289)
+..-|.-|..+|.|++||.||.+++.+++-+. ..+.+-+..|.++++|-.|..-++.++... . .-+ .
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~Np------V~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--~----~Y~-K 166 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNP------VYHINRALAYLKQKSFAQAEEDCEAAIALD--K----LYV-K 166 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCc------cchhhHHHHHHHHHHHHHHHHhHHHHHHhh--H----HHH-H
Confidence 45667788888999999999999999877432 245666777888888888888777776321 1 111 2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992 195 HLLNAGICQLCKGDVVAITNALERYQDMDPT 225 (289)
Q Consensus 195 ~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~ 225 (289)
+|.+.+.....+|...+|.+-++.++.+.|.
T Consensus 167 AYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 167 AYSRRMQARESLGNNMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHHHHHHHHhhHHHHHHhHHHHHhhCcc
Confidence 3455566667778888888888888887765
No 242
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.00 E-value=0.82 Score=38.74 Aligned_cols=141 Identities=17% Similarity=0.209 Sum_probs=76.7
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHH
Q 022992 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE----HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYA 162 (289)
Q Consensus 87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~----g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~ 162 (289)
+.+-|..-.++..++..+ .++..+|..|... +.+..|.-.|+.-.+- ...-...++..+.++
T Consensus 152 r~d~A~~~lk~mq~ided--------~tLtQLA~awv~la~ggek~qdAfyifeE~s~k------~~~T~~llnG~Av~~ 217 (299)
T KOG3081|consen 152 RFDLAEKELKKMQQIDED--------ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK------TPPTPLLLNGQAVCH 217 (299)
T ss_pred HHHHHHHHHHHHHccchH--------HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc------cCCChHHHccHHHHH
Confidence 455555555555444221 2344444444432 2355666666544332 222335778889999
Q ss_pred HHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHH-HHHHHHhhcCCCCCCchHHHHHHHHHHH
Q 022992 163 AELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAIT-NALERYQDMDPTFSGTREYRLLSDIAAS 241 (289)
Q Consensus 163 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~-~~~~~~~~~~~~~~~~~e~~~l~~l~~a 241 (289)
..+|+|++|..+++.++... ++-...+.|...+-+..|...... +.+......+|.+ .++..+-.
T Consensus 218 l~~~~~eeAe~lL~eaL~kd-------~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h------~~vk~~~e- 283 (299)
T KOG3081|consen 218 LQLGRYEEAESLLEEALDKD-------AKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH------PFVKHLNE- 283 (299)
T ss_pred HHhcCHHHHHHHHHHHHhcc-------CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc------hHHHHHHH-
Confidence 99999999999999998442 223445667666655666443333 3333333333333 23322211
Q ss_pred HcccCHHHHHHHHHhccc
Q 022992 242 MDEEDIAKFTDVVKEFDS 259 (289)
Q Consensus 242 ~~~~d~~~~~~al~~~~~ 259 (289)
-...|.+.+..|+.
T Consensus 284 ----keaeFDrl~~qy~~ 297 (299)
T KOG3081|consen 284 ----KEAEFDRLVLQYDT 297 (299)
T ss_pred ----HHHHHHHHHHHhcc
Confidence 13567777777654
No 243
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.99 E-value=0.0033 Score=35.55 Aligned_cols=33 Identities=24% Similarity=0.531 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHH
Q 022992 94 CLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTI 132 (289)
Q Consensus 94 ~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~ 132 (289)
+|++|+++.+.+.. ++.++|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~------a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAE------AYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHH------HHHHHHHHHHHCcCHHhhc
Confidence 47888888876655 9999999999999999986
No 244
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.98 E-value=0.026 Score=31.46 Aligned_cols=30 Identities=13% Similarity=0.331 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992 153 QCKQKVAQYAAELEQYHKSIEIYEEIARQS 182 (289)
Q Consensus 153 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 182 (289)
.++..+|.++..+|++++|+++|++++...
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 578899999999999999999999998543
No 245
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=95.96 E-value=0.029 Score=44.52 Aligned_cols=51 Identities=25% Similarity=0.308 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHh
Q 022992 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE----HNIEQTIVFFEKAADMFQ 143 (289)
Q Consensus 87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~----g~~~~A~~~y~~A~~~~~ 143 (289)
-+++|+.-|+.|+.+-+...+ ++.++|..|..+ .+..+|-.+|++|.+.|.
T Consensus 50 miedAisK~eeAL~I~P~~hd------Alw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~Fq 104 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPNKHD------ALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQ 104 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HH------HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchHH------HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Confidence 467888888888888776554 677777776654 334445555555555444
No 246
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.95 E-value=1.9 Score=42.44 Aligned_cols=182 Identities=10% Similarity=-0.010 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC---CHHHHHHHHHHHHHHHHhcCCHH
Q 022992 33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT---SSNEAISCLEQAVNMFCDIGRLS 109 (289)
Q Consensus 33 ~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~---~~~~A~~~~~~A~~~~~~~g~~~ 109 (289)
+.++...+.+....|++++|..+...+.+..+..+.+.-+..+...-+.+.... -+.+...-+...-....... +.
T Consensus 497 ~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~-~~ 575 (894)
T COG2909 497 IVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQK-PR 575 (894)
T ss_pred hhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc-cc
Confidence 445555678888999999999999999999999998888777776666666443 22222222222222211111 11
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCcc-chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhc-cc
Q 022992 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT-TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN-NL 187 (289)
Q Consensus 110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-~~ 187 (289)
..-.....+...+.. -+++.+..-....+++-...... ....-.+..++.+....|++++|.....+........ ..
T Consensus 576 ~~f~~~~r~~ll~~~-~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~ 654 (894)
T COG2909 576 HEFLVRIRAQLLRAW-LRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYH 654 (894)
T ss_pred chhHHHHHHHHHHHH-HHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCC
Confidence 111111122222222 23566655555565553332222 2222223589999999999999999998886433222 11
Q ss_pred cccchhhHHHHHH-HHHHccCCHHHHHHHHHH
Q 022992 188 LKYGVKGHLLNAG-ICQLCKGDVVAITNALER 218 (289)
Q Consensus 188 ~~~~~~~~~~~~~-~~~l~~gd~~~A~~~~~~ 218 (289)
+.+... -..+. ...+.+||...+..-..+
T Consensus 655 ~~~~a~--~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 655 VDYLAA--AYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred chHHHH--HHHhhHHHhcccCCHHHHHHHHHh
Confidence 112111 12222 334567888877666655
No 247
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.90 E-value=0.34 Score=46.13 Aligned_cols=149 Identities=15% Similarity=0.176 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 022992 49 WDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT------SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELY 122 (289)
Q Consensus 49 ~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~------~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~ 122 (289)
...+..+|..++.. |+ ..+...+|.+|..+ |++.|+.+++.|..-+.+.- ..+-..+...+|.+|
T Consensus 228 ~~~a~~~~~~~a~~----g~----~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a-~~~~~~a~~~lg~~Y 298 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL----GH----SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA-TKGLPPAQYGLGRLY 298 (552)
T ss_pred hhHHHHHHHHHHhh----cc----hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH-hhcCCccccHHHHHH
Confidence 34566666665544 22 44566778887544 89999999999988422210 001223567788888
Q ss_pred Hhc----C-CHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHhhccccccchhh
Q 022992 123 ESE----H-NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE---QYHKSIEIYEEIARQSLNNNLLKYGVKG 194 (289)
Q Consensus 123 ~~~----g-~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 194 (289)
... . ++..|+.+|.+|.+.- .+ ++...+|.++..-. ++..|.++|..+.. .+...
T Consensus 299 ~~g~~~~~~d~~~A~~~~~~aA~~g----~~----~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~---------~G~~~ 361 (552)
T KOG1550|consen 299 LQGLGVEKIDYEKALKLYTKAAELG----NP----DAQYLLGVLYETGTKERDYRRAFEYYSLAAK---------AGHIL 361 (552)
T ss_pred hcCCCCccccHHHHHHHHHHHHhcC----Cc----hHHHHHHHHHHcCCccccHHHHHHHHHHHHH---------cCChH
Confidence 873 2 7788999999997752 22 46678888887544 68899999999962 23344
Q ss_pred HHHHHHHHHHc----cCCHHHHHHHHHHHhhcC
Q 022992 195 HLLNAGICQLC----KGDVVAITNALERYQDMD 223 (289)
Q Consensus 195 ~~~~~~~~~l~----~gd~~~A~~~~~~~~~~~ 223 (289)
.+.+++.|+.. .-+...|...+.++.+..
T Consensus 362 A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 362 AIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 56677777653 237778888888876644
No 248
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.89 E-value=0.015 Score=32.09 Aligned_cols=30 Identities=13% Similarity=0.313 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 022992 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQ 143 (289)
Q Consensus 114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~~ 143 (289)
++..+|.++...|++++|+..|++.++.++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 344555555555555555555555555444
No 249
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.82 E-value=0.75 Score=39.70 Aligned_cols=149 Identities=16% Similarity=0.124 Sum_probs=99.9
Q ss_pred HcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-----CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022992 45 LAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-----SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIA 119 (289)
Q Consensus 45 ~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-----~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la 119 (289)
..+++..+...+.++.. .++ +.....++.+|... +..+|+.+|+.+.+. +.+....++|
T Consensus 53 ~~~~~~~a~~~~~~a~~----~~~----~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~--------g~~~a~~~lg 116 (292)
T COG0790 53 YPPDYAKALKSYEKAAE----LGD----AAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD--------GLAEALFNLG 116 (292)
T ss_pred ccccHHHHHHHHHHhhh----cCC----hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc--------ccHHHHHhHH
Confidence 45677778888777776 222 25667788888665 788899998844332 2344666799
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHh----c---CHHHHHHHHHHHHHHHhhcccc
Q 022992 120 ELYES----EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL----E---QYHKSIEIYEEIARQSLNNNLL 188 (289)
Q Consensus 120 ~~~~~----~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~----g---~~~~A~~~~~~a~~~~~~~~~~ 188 (289)
.++.. ..|+.+|..+|++|.+.--..+ +.+...++.++..- + +...|+..|.++....
T Consensus 117 ~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a-----~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~------ 185 (292)
T COG0790 117 LMYANGRGVPLDLVKALKYYEKAAKLGNVEA-----ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG------ 185 (292)
T ss_pred HHHhcCCCcccCHHHHHHHHHHHHHcCChhH-----HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc------
Confidence 99887 3489999999999987532211 34467777777653 1 3347888888886321
Q ss_pred ccchhhHHHHHHHHHHc----cCCHHHHHHHHHHHhhcC
Q 022992 189 KYGVKGHLLNAGICQLC----KGDVVAITNALERYQDMD 223 (289)
Q Consensus 189 ~~~~~~~~~~~~~~~l~----~gd~~~A~~~~~~~~~~~ 223 (289)
......++|.+|.. ..|..+|..-|.++.+..
T Consensus 186 ---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 186 ---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred ---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 23345677777643 237889999999987754
No 250
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=95.75 E-value=0.035 Score=48.41 Aligned_cols=94 Identities=16% Similarity=0.060 Sum_probs=71.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022992 39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKE 117 (289)
Q Consensus 39 A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~ 117 (289)
-|+-|..+|.|++|++||.+++.++... ...+.+-+.+|.+. .+..|..-+..|+.+.. .-.+++..
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~N------pV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~------~Y~KAYSR 170 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPHN------PVYHINRALAYLKQKSFAQAEEDCEAAIALDK------LYVKAYSR 170 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCCC------ccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH------HHHHHHHH
Confidence 3677888999999999999999886532 23455556667665 77777777777777644 35567778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992 118 IAELYESEHNIEQTIVFFEKAADMFQN 144 (289)
Q Consensus 118 la~~~~~~g~~~~A~~~y~~A~~~~~~ 144 (289)
-|..-..+|...+|-+-|+.++++-+.
T Consensus 171 R~~AR~~Lg~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 171 RMQARESLGNNMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHHHHhhHHHHHHhHHHHHhhCcc
Confidence 888888889999999999999987654
No 251
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.68 E-value=1.7 Score=39.95 Aligned_cols=138 Identities=17% Similarity=0.155 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHccC---CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhccCcc
Q 022992 73 AQAYVDAAHCYKKT---SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES-EHNIEQTIVFFEKAADMFQNEEVT 148 (289)
Q Consensus 73 a~~~~~~a~~~~~~---~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~-~g~~~~A~~~y~~A~~~~~~~~~~ 148 (289)
+.++..+|..++.. ...++|.|.+-. +.-.-...-.+++...+|.++.. ..+.+.|-.++++|..+.+..++.
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~---~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~f 83 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAI---FQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSF 83 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHH---hccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccH
Confidence 34445555555554 334444444432 22222333456666666655433 356677777777776666655544
Q ss_pred -chHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHH
Q 022992 149 -TSANQCKQKVAQYAAELE-QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNAL 216 (289)
Q Consensus 149 -~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~ 216 (289)
....+...-++.+|.... .++.|-...++++....+.+ +=....++.++.++....|++.|.+.+
T Consensus 84 ydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p---~wsckllfQLaql~~idkD~~sA~elL 150 (629)
T KOG2300|consen 84 YDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVP---YWSCKLLFQLAQLHIIDKDFPSALELL 150 (629)
T ss_pred HhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCc---hhhHHHHHHHHHHHhhhccchhHHHHH
Confidence 333445555666666555 55666666666664432221 122234445555565566666666553
No 252
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.65 E-value=0.26 Score=45.84 Aligned_cols=119 Identities=14% Similarity=0.087 Sum_probs=85.2
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC
Q 022992 48 SWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH 126 (289)
Q Consensus 48 ~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g 126 (289)
+.+.|.+........|.+ -+-.+...|.+++.. ++++|++++++|+..- ...++-..-++..+|.++.-+.
T Consensus 248 ~~~~a~~lL~~~~~~yP~------s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q--~~~~Ql~~l~~~El~w~~~~~~ 319 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPN------SALFLFFEGRLERLKGNLEEAIESFERAIESQ--SEWKQLHHLCYFELAWCHMFQH 319 (468)
T ss_pred CHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHhcCHHHHHHHHHHhccch--hhHHhHHHHHHHHHHHHHHHHc
Confidence 344455555555444432 233455567777655 9999999999998432 3334455678999999999999
Q ss_pred CHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCH-------HHHHHHHHHHH
Q 022992 127 NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQY-------HKSIEIYEEIA 179 (289)
Q Consensus 127 ~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------~~A~~~~~~a~ 179 (289)
++++|.++|.+-.+. +..+.+-.....|.++..+|+. ++|.+++.++-
T Consensus 320 ~w~~A~~~f~~L~~~-----s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 320 DWEEAAEYFLRLLKE-----SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred hHHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 999999999887763 2224455667888899999988 88888988884
No 253
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.64 E-value=1.5 Score=38.87 Aligned_cols=227 Identities=14% Similarity=0.068 Sum_probs=118.5
Q ss_pred CCC-CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHH----------HHHHhcCCHHHHHHHHHH
Q 022992 24 LFG-SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLA----------NCHLKLESKHEAAQAYVD 78 (289)
Q Consensus 24 ~~~-~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~----------~~~~~~~~~~~aa~~~~~ 78 (289)
.|- |||.+|+..|..+ +-++-..|.|.+|...-.+|. .+..++|+.......+.+
T Consensus 67 ~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~ 146 (557)
T KOG3785|consen 67 YFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSS 146 (557)
T ss_pred HHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 355 9999999999877 455667888999888777663 334577887777777777
Q ss_pred HHHHHccC----CHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHH
Q 022992 79 AAHCYKKT----SSNEAISCLEQAVNMFCDI-GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQ 153 (289)
Q Consensus 79 ~a~~~~~~----~~~~A~~~~~~A~~~~~~~-g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~ 153 (289)
++...... ...=...+|+.|+++|.+. -+...-...-+.+|.||.++.=|+-+-+...-=+.-+ ++...
T Consensus 147 LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~---pdSti--- 220 (557)
T KOG3785|consen 147 LQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF---PDSTI--- 220 (557)
T ss_pred HhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC---CCcHH---
Confidence 76655322 2222334455555555432 1122233345667777777655554444332222222 22111
Q ss_pred HHHHHHHHHHH--hcC----------------HHHHHHHHHHHH--------HHHhhccccccchhhHHHHHHHHHHccC
Q 022992 154 CKQKVAQYAAE--LEQ----------------YHKSIEIYEEIA--------RQSLNNNLLKYGVKGHLLNAGICQLCKG 207 (289)
Q Consensus 154 ~~~~l~~~~~~--~g~----------------~~~A~~~~~~a~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~g 207 (289)
+.+-.+..+.+ .|+ |+.+..+.+.-+ ...+=+++.+ -..++.+++.+.|+.++
T Consensus 221 A~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~-~IPEARlNL~iYyL~q~ 299 (557)
T KOG3785|consen 221 AKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMK-HIPEARLNLIIYYLNQN 299 (557)
T ss_pred HHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHh-hChHhhhhheeeecccc
Confidence 11222222211 122 222222221110 0000011111 12345567777889999
Q ss_pred CHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH---cccCHHHHHHHHHhccccCCC
Q 022992 208 DVVAITNALERYQDMDPTFSGTREYRLLSDIAASM---DEEDIAKFTDVVKEFDSMTPL 263 (289)
Q Consensus 208 d~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~---~~~d~~~~~~al~~~~~~~~~ 263 (289)
|..+|...... +.|. ++.-.++..+.-+- +.|..+.+..|.+-|.-++..
T Consensus 300 dVqeA~~L~Kd---l~Pt---tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~S 352 (557)
T KOG3785|consen 300 DVQEAISLCKD---LDPT---TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGES 352 (557)
T ss_pred cHHHHHHHHhh---cCCC---ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccc
Confidence 99888776644 3333 33333455554332 467778888888877776654
No 254
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.61 E-value=0.03 Score=30.81 Aligned_cols=29 Identities=17% Similarity=0.429 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992 153 QCKQKVAQYAAELEQYHKSIEIYEEIARQ 181 (289)
Q Consensus 153 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 181 (289)
+++.++|.++...|++++|++.|++++..
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 36789999999999999999999999754
No 255
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.61 E-value=0.036 Score=32.28 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992 152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQ 181 (289)
Q Consensus 152 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 181 (289)
+.++.++|.+|..+|++++|..++++++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 358899999999999999999999999743
No 256
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.55 E-value=0.4 Score=45.43 Aligned_cols=19 Identities=16% Similarity=0.326 Sum_probs=12.4
Q ss_pred HHHHHhcCHHHHHHHHHHH
Q 022992 160 QYAAELEQYHKSIEIYEEI 178 (289)
Q Consensus 160 ~~~~~~g~~~~A~~~~~~a 178 (289)
+++++.++|++|..+.++.
T Consensus 781 qlHve~~~W~eAFalAe~h 799 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKH 799 (1081)
T ss_pred hheeecccchHhHhhhhhC
Confidence 4556677777777765554
No 257
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.08 Score=43.93 Aligned_cols=94 Identities=15% Similarity=0.140 Sum_probs=76.7
Q ss_pred HHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHH
Q 022992 77 VDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCK 155 (289)
Q Consensus 77 ~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~ 155 (289)
..-|+.+... .++.|+.+|.+|+.+-+. .+..+.|-+.+|.+..+++.+..-..+|+++... .....
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~------~~~Y~tnralchlk~~~~~~v~~dcrralql~~N------~vk~h 81 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICINPT------VASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN------LVKAH 81 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhcCCC------cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH------HHHHH
Confidence 3335555444 899999999999988764 3458899999999999999999999999998654 33567
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992 156 QKVAQYAAELEQYHKSIEIYEEIARQS 182 (289)
Q Consensus 156 ~~l~~~~~~~g~~~~A~~~~~~a~~~~ 182 (289)
.-+|........|++||..++++....
T Consensus 82 ~flg~~~l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 82 YFLGQWLLQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 889999999999999999999995433
No 258
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.42 E-value=1.7 Score=44.94 Aligned_cols=155 Identities=12% Similarity=0.149 Sum_probs=111.3
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 022992 46 AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES 124 (289)
Q Consensus 46 ~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~ 124 (289)
.|.-+.-...|++|.... .+-..|..+..+|... .+++|.++++.-+.-|. +.-..|...|..+..
T Consensus 1510 yG~eesl~kVFeRAcqyc-------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~------q~~~vW~~y~~fLl~ 1576 (1710)
T KOG1070|consen 1510 YGTEESLKKVFERACQYC-------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG------QTRKVWIMYADFLLR 1576 (1710)
T ss_pred hCcHHHHHHHHHHHHHhc-------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc------chhhHHHHHHHHHhc
Confidence 355566677777777664 2345778888888777 88899999887776665 344588888998888
Q ss_pred cCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHH
Q 022992 125 EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQL 204 (289)
Q Consensus 125 ~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 204 (289)
+.+-+.|...+.+|+...+... -.+...+.+++-.+.|+.+.+..+|+..+...+. + ...|.-..-.-.
T Consensus 1577 ~ne~~aa~~lL~rAL~~lPk~e----Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK----R---tDlW~VYid~ei 1645 (1710)
T KOG1070|consen 1577 QNEAEAARELLKRALKSLPKQE----HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK----R---TDLWSVYIDMEI 1645 (1710)
T ss_pred ccHHHHHHHHHHHHHhhcchhh----hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc----c---hhHHHHHHHHHH
Confidence 7888888899999999887632 2356778888888999999999999887633211 1 123333333445
Q ss_pred ccCCHHHHHHHHHHHhhcCC
Q 022992 205 CKGDVVAITNALERYQDMDP 224 (289)
Q Consensus 205 ~~gd~~~A~~~~~~~~~~~~ 224 (289)
..|+...++..|++.+.+.-
T Consensus 1646 k~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1646 KHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred ccCCHHHHHHHHHHHHhcCC
Confidence 67788888888888877743
No 259
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=1.9 Score=37.81 Aligned_cols=237 Identities=9% Similarity=0.089 Sum_probs=142.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 022992 39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT--SSNEAISCLEQAVNMFCDIGRLSMAARYYK 116 (289)
Q Consensus 39 A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~--~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~ 116 (289)
.+..|...|+..+-.+.....-..+...+. ..++.....+...+... .++.-+..+...++-..+......--..-.
T Consensus 54 l~~ll~~~~~~~~lr~li~~~Rpf~~~v~K-akaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Lea 132 (411)
T KOG1463|consen 54 LGDLLAKEGDAEELRDLITSLRPFLSSVSK-AKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEA 132 (411)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 367788888888877777777766665543 23455556666655444 566777777777777666666555555566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--Hhhccccccchhh
Q 022992 117 EIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ--SLNNNLLKYGVKG 194 (289)
Q Consensus 117 ~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~ 194 (289)
++..+|...++|.+|+..-..-+.-+++.++.....++..-=.-+|..+.+..+|-..+..+-.. ...-|+ ..+ +.
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpP-qlQ-a~ 210 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPP-QLQ-AT 210 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCH-HHH-HH
Confidence 77788888899999999999888888877766555555555556677777788877776655311 111110 000 00
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-------------------------------------CchHHHHHHH
Q 022992 195 HLLNAGICQLCKGDVVAITNALERYQDMDPTFS-------------------------------------GTREYRLLSD 237 (289)
Q Consensus 195 ~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~-------------------------------------~~~e~~~l~~ 237 (289)
.-+.-|+.|....|+.-|-..|-++.+-+.... .++.-..+..
T Consensus 211 lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amka 290 (411)
T KOG1463|consen 211 LDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKA 290 (411)
T ss_pred HHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHH
Confidence 011112222222233332222222211111110 1233445667
Q ss_pred HHHHHcccCHHHHHHHHHhccccCCCchhHHHHHHHHHHhc
Q 022992 238 IAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKL 278 (289)
Q Consensus 238 l~~a~~~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~~ 278 (289)
+.+++.+.++..|+.|+..|..--..||.-+.-+..+-+.|
T Consensus 291 vAeA~~nRSLkdF~~AL~~yk~eL~~D~ivr~Hl~~Lyd~l 331 (411)
T KOG1463|consen 291 VAEAFGNRSLKDFEKALADYKKELAEDPIVRSHLQSLYDNL 331 (411)
T ss_pred HHHHhcCCcHHHHHHHHHHhHHHHhcChHHHHHHHHHHHHH
Confidence 77788888899999999999888778888776666555544
No 260
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.22 E-value=0.035 Score=33.21 Aligned_cols=32 Identities=9% Similarity=-0.009 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Q 022992 153 QCKQKVAQYAAELEQYHKSIEIYEEIARQSLN 184 (289)
Q Consensus 153 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 184 (289)
.++..+|.+|..+|++++|++.|++++....+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 46788999999999999999999999866543
No 261
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.19 E-value=0.7 Score=39.16 Aligned_cols=130 Identities=12% Similarity=0.073 Sum_probs=96.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 022992 42 SFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAE 120 (289)
Q Consensus 42 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~ 120 (289)
+..-.|.|.-+.+.+.+..+- ++...-.....+|.+-.+. |.+.|..++++.-..--+.+......-+..+.+.
T Consensus 186 ~llG~kEy~iS~d~~~~vi~~-----~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 186 CLLGMKEYVLSVDAYHSVIKY-----YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHhcchhhhhhHHHHHHHHHh-----CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 344456667777777777663 2223344556677777666 8888888988776665566666677888889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992 121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS 182 (289)
Q Consensus 121 ~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 182 (289)
+|.-.+++.+|...|.+.+.....+ +.+.++-+-|+..+|+...|++..+.+..+.
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~------~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRN------AVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred heecccchHHHHHHHhhccccCCCc------hhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9998899999999999887654432 2356788889999999999999999987543
No 262
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.10 E-value=1.6 Score=37.18 Aligned_cols=232 Identities=9% Similarity=0.091 Sum_probs=135.5
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc
Q 022992 27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI 105 (289)
Q Consensus 27 ~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~ 105 (289)
||.+---++|..-|. ...++++|+..|.+.+++-..-|+|.. .++.++..++... ++++-++.|.+.+...+..
T Consensus 24 pdVDlENQYYnsK~l---~e~~p~~Al~sF~kVlelEgEKgeWGF--KALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA 98 (440)
T KOG1464|consen 24 PDVDLENQYYNSKGL---KEDEPKEALSSFQKVLELEGEKGEWGF--KALKQMIKINFRLGNYKEMMERYKQLLTYIKSA 98 (440)
T ss_pred CCcchHhhhhccccc---cccCHHHHHHHHHHHHhcccccchhHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 555544444443221 234789999999999999766666644 3566777777666 9999999999988876643
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhc
Q 022992 106 GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (289)
Q Consensus 106 g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 185 (289)
=...-.-++.+.+-.......+.+--.++|+-.++..+...+.+.....-.++|.+|...|+|.+-.+++.+.-..+...
T Consensus 99 VTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~e 178 (440)
T KOG1464|consen 99 VTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTE 178 (440)
T ss_pred HhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccc
Confidence 21111223444444444444555666678888888777655444444456789999999999988888777663222111
Q ss_pred cc---cccchh--hHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH--cccCH----HHHHHHH
Q 022992 186 NL---LKYGVK--GHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASM--DEEDI----AKFTDVV 254 (289)
Q Consensus 186 ~~---~~~~~~--~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~--~~~d~----~~~~~al 254 (289)
.. .+-++. +.|.--...|..+.+-..-...|+.++.+....++-.---+++.++--+ ..|.. ..|=+|-
T Consensus 179 dGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 179 DGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred cCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 10 011111 1111113455566665666677888877766655322122233333211 23332 3455677
Q ss_pred HhccccCCC
Q 022992 255 KEFDSMTPL 263 (289)
Q Consensus 255 ~~~~~~~~~ 263 (289)
+.|+..+..
T Consensus 259 KNYDEsGsp 267 (440)
T KOG1464|consen 259 KNYDESGSP 267 (440)
T ss_pred hcccccCCc
Confidence 777777653
No 263
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.98 E-value=0.52 Score=38.82 Aligned_cols=66 Identities=14% Similarity=0.114 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992 108 LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (289)
Q Consensus 108 ~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 179 (289)
...-|..+..-|.+|...|-..-|.--|.+++.+.+.. +.+++-+|..+...|+|+.|.+.|....
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m------~~vfNyLG~Yl~~a~~fdaa~eaFds~~ 126 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDM------PEVFNYLGIYLTQAGNFDAAYEAFDSVL 126 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCc------HHHHHHHHHHHHhcccchHHHHHhhhHh
Confidence 34455566666666666666666666666666665542 3566666666666677777776666665
No 264
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.90 E-value=2.7 Score=40.44 Aligned_cols=62 Identities=15% Similarity=0.118 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHH-----hcC----CHHHHHHHHHHHHHHHccC-CHHHHHHHHHHH
Q 022992 37 DKAANSFKLAKSWDKAGATYVKLANCHL-----KLE----SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQA 98 (289)
Q Consensus 37 ~~A~~~~~~~g~~~~A~~~~~~a~~~~~-----~~~----~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A 98 (289)
+.|...|....+-|-|++.+.+..+.++ +.| +..+--.++.++|..+... .+++|.++|.+.
T Consensus 751 eeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 751 EEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred hHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444455555555666666665555543 121 3344556778888877665 777887777654
No 265
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.84 E-value=2.9 Score=37.65 Aligned_cols=194 Identities=13% Similarity=0.190 Sum_probs=100.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022992 59 LANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEK 137 (289)
Q Consensus 59 a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~ 137 (289)
=++-++...-....-.++..+|.-|... +++.|+.+|-++.+.....+. .+..+.++-.+-...|++-....+-.+
T Consensus 136 eLk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~kh---vInm~ln~i~VSI~~~nw~hv~sy~~~ 212 (466)
T KOG0686|consen 136 ELKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKH---VINMCLNLILVSIYMGNWGHVLSYISK 212 (466)
T ss_pred HHHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHH---HHHHHHHHHHHHHhhcchhhhhhHHHH
Confidence 3444443333334456888889888766 999999999998887765554 333444443444444565555555555
Q ss_pred HHHHH---hcc-CccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh-ccccccchhhHHHHHHHHHHccCCHHHH
Q 022992 138 AADMF---QNE-EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN-NNLLKYGVKGHLLNAGICQLCKGDVVAI 212 (289)
Q Consensus 138 A~~~~---~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~l~~gd~~~A 212 (289)
|...- ... ........|+. |.....+++|..|.++|-.+.....+ +... ...+.-...|+|-+..=|...-
T Consensus 213 A~st~~~~~~~~q~v~~kl~C~a--gLa~L~lkkyk~aa~~fL~~~~~~~d~~~iv--tpsdv~iYggLcALAtfdr~~L 288 (466)
T KOG0686|consen 213 AESTPDANENLAQEVPAKLKCAA--GLANLLLKKYKSAAKYFLLAEFDHCDYPEIV--TPSDVAIYGGLCALATFDRQDL 288 (466)
T ss_pred HHhCchhhhhHHHhcCcchHHHH--HHHHHHHHHHHHHHHHHHhCCCCccCcccee--cchhhHHHHhhHhhccCCHHHH
Confidence 54431 110 01112223444 44455566999999988776421111 1110 0111122346666654443322
Q ss_pred ------HHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccCHHHHHHHHHhccccCCCchhHH
Q 022992 213 ------TNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKT 268 (289)
Q Consensus 213 ------~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d~~~~~~al~~~~~~~~~d~~~~ 268 (289)
-..|+.++++.|+ +..++..+..+....+-+.++.-..--.+|+--.
T Consensus 289 k~~vi~n~~Fk~flel~Pq---------lr~il~~fy~sky~~cl~~L~~~k~~llLD~yLa 341 (466)
T KOG0686|consen 289 KLNVIKNESFKLFLELEPQ---------LREILFKFYSSKYASCLELLREIKPRLLLDMYLA 341 (466)
T ss_pred HHHHHcchhhhhHHhcChH---------HHHHHHHHhhhhHHHHHHHHHHhccceeechhcc
Confidence 2345555555544 4455555555555555555544343333454333
No 266
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=94.77 E-value=0.088 Score=49.07 Aligned_cols=97 Identities=8% Similarity=0.040 Sum_probs=56.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHH
Q 022992 119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLN 198 (289)
Q Consensus 119 a~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 198 (289)
|.++...|+...|+.++++|+...+.... ..+.+++.++...|-...|-+++.+++..... ..-.++.
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~-----v~~v~la~~~~~~~~~~da~~~l~q~l~~~~s-------epl~~~~ 681 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQD-----VPLVNLANLLIHYGLHLDATKLLLQALAINSS-------EPLTFLS 681 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhc-----ccHHHHHHHHHHhhhhccHHHHHHHHHhhccc-------CchHHHh
Confidence 44455557777777777777665544322 23456666666666666666666666533211 1222344
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992 199 AGICQLCKGDVVAITNALERYQDMDPTFS 227 (289)
Q Consensus 199 ~~~~~l~~gd~~~A~~~~~~~~~~~~~~~ 227 (289)
.|..++...|.++|.++|..++...+.-.
T Consensus 682 ~g~~~l~l~~i~~a~~~~~~a~~~~~~~~ 710 (886)
T KOG4507|consen 682 LGNAYLALKNISGALEAFRQALKLTTKCP 710 (886)
T ss_pred cchhHHHHhhhHHHHHHHHHHHhcCCCCh
Confidence 56666666677777777777666655543
No 267
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=94.76 E-value=0.8 Score=46.71 Aligned_cols=182 Identities=10% Similarity=-0.003 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hcC-CHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc--CCH
Q 022992 34 DLFDKAANSFKLAKSWDKAGATYVKLANCHL-KLE-SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI--GRL 108 (289)
Q Consensus 34 ~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~-~~~-~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~--g~~ 108 (289)
+-+.+.+......|.|.++.+ .-+++.++. ..| .....+.+|..++.++-+. +.++|+.+..+|+-+..+. -+.
T Consensus 933 ~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds 1011 (1236)
T KOG1839|consen 933 KDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS 1011 (1236)
T ss_pred hhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC
Confidence 344555666667788888888 677777765 222 2345688899999988776 9999999999999888765 356
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-C-ccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH---h
Q 022992 109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE-E-VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS---L 183 (289)
Q Consensus 109 ~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~-~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~---~ 183 (289)
......+.+++......++...|+..+.+|..+..-. + ..+.-+.+..+++.++...++++.|+++.+.+.... .
T Consensus 1012 ~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~ 1091 (1236)
T KOG1839|consen 1012 PNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVL 1091 (1236)
T ss_pred HHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence 6788889999988888889999999999998874322 1 233445577899999999999999999999997422 1
Q ss_pred hccccccchhhHHHHHHHHHHccCCHHHHHHHHHH
Q 022992 184 NNNLLKYGVKGHLLNAGICQLCKGDVVAITNALER 218 (289)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~ 218 (289)
+.. .......+...+..+-+.+|+..|......
T Consensus 1092 g~~--~l~~~~~~~~~a~l~~s~~dfr~al~~ek~ 1124 (1236)
T KOG1839|consen 1092 GPK--ELETALSYHALARLFESMKDFRNALEHEKV 1124 (1236)
T ss_pred Ccc--chhhhhHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 111 111112222334455556666665544443
No 268
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=94.74 E-value=0.063 Score=31.10 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992 113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (289)
Q Consensus 113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~ 144 (289)
.++..+|.+-...++|++|+.-|++|+++.++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~ 33 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEE 33 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 46677777777777777777777777777543
No 269
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.70 E-value=0.043 Score=29.05 Aligned_cols=29 Identities=14% Similarity=0.313 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 022992 114 YYKEIAELYESEHNIEQTIVFFEKAADMF 142 (289)
Q Consensus 114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~ 142 (289)
++..+|.++...+++++|+.+|++++.+.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 55667777777777777777777776653
No 270
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.61 E-value=0.91 Score=36.88 Aligned_cols=60 Identities=17% Similarity=0.262 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHH
Q 022992 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSI 172 (289)
Q Consensus 110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 172 (289)
.-+.....+|..|.. .|.++++.+|-+++++....... -++++..|+.++..+|+++.|-
T Consensus 139 ~t~elq~aLAtyY~k-rD~~Kt~~ll~~~L~l~~~~~~~--n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 139 ETAELQYALATYYTK-RDPEKTIQLLLRALELSNPDDNF--NPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhcCCCCCC--CHHHHHHHHHHHHHhcchhhhh
Confidence 457788899999997 89999999999999998766433 2578999999999999999873
No 271
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.59 E-value=3.7 Score=37.82 Aligned_cols=188 Identities=13% Similarity=0.113 Sum_probs=96.5
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 022992 46 AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES 124 (289)
Q Consensus 46 ~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~ 124 (289)
++++..|...|++|++.- ..-...+..-+.+-.+. ....|...+.+|+.+.++.++ .+.+--.+-+.
T Consensus 86 q~e~~RARSv~ERALdvd------~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq------lWyKY~ymEE~ 153 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD------YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ------LWYKYIYMEEM 153 (677)
T ss_pred HHHHHHHHHHHHHHHhcc------cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH------HHHHHHHHHHH
Confidence 344455555555555442 12233455555555555 778888999999988887654 66666666666
Q ss_pred cCCHHHHHHHHHHHHHHHhccC--------------------------ccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 022992 125 EHNIEQTIVFFEKAADMFQNEE--------------------------VTTSANQCKQKVAQYAAELEQYHKSIEIYEEI 178 (289)
Q Consensus 125 ~g~~~~A~~~y~~A~~~~~~~~--------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 178 (289)
+|+..-|...|++=++.-+... ..+-....+.+.+.+-.+.|....|...|+++
T Consensus 154 LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerA 233 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERA 233 (677)
T ss_pred hcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 6777777777766554433211 00111123333444444555566666666665
Q ss_pred HHHHhhccccccchhhHHHHHHHHHH--ccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH--cccCHHHHHHHH
Q 022992 179 ARQSLNNNLLKYGVKGHLLNAGICQL--CKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASM--DEEDIAKFTDVV 254 (289)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~l--~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~--~~~d~~~~~~al 254 (289)
+... ++ . .....++.+ .++. .+.++++|+-.|.-+++-.|+ .....|..-..++ ..||...++.++
T Consensus 234 ie~~-~~---d-~~~e~lfva-FA~fEe~qkE~ERar~iykyAld~~pk----~raeeL~k~~~~fEKqfGd~~gIEd~I 303 (677)
T KOG1915|consen 234 IEFL-GD---D-EEAEILFVA-FAEFEERQKEYERARFIYKYALDHIPK----GRAEELYKKYTAFEKQFGDKEGIEDAI 303 (677)
T ss_pred HHHh-hh---H-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCc----ccHHHHHHHHHHHHHHhcchhhhHHHH
Confidence 5321 11 0 111222221 2222 244667777777777664433 1122233333444 367766666665
Q ss_pred H
Q 022992 255 K 255 (289)
Q Consensus 255 ~ 255 (289)
-
T Consensus 304 v 304 (677)
T KOG1915|consen 304 V 304 (677)
T ss_pred h
Confidence 3
No 272
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.57 E-value=1 Score=37.13 Aligned_cols=96 Identities=4% Similarity=-0.078 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHH
Q 022992 31 DAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLS 109 (289)
Q Consensus 31 ~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~ 109 (289)
+-+.+.-.=|..|...|-+.-|..-|.+++.+..++ +..++-+|..+... +++.|.+.|...+++.+..+-
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m------~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Y-- 134 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDM------PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY-- 134 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCc------HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchH--
Confidence 334444445788888888888888888888886654 56788888887666 999999999988888664443
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022992 110 MAARYYKEIAELYESEHNIEQTIVFFEKA 138 (289)
Q Consensus 110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A 138 (289)
+..|-|..+.--|+++-|.+-+.+-
T Consensus 135 ----a~lNRgi~~YY~gR~~LAq~d~~~f 159 (297)
T COG4785 135 ----AHLNRGIALYYGGRYKLAQDDLLAF 159 (297)
T ss_pred ----HHhccceeeeecCchHhhHHHHHHH
Confidence 4444455444447777766655443
No 273
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=94.55 E-value=3 Score=36.60 Aligned_cols=172 Identities=12% Similarity=0.179 Sum_probs=104.8
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCcc-chHHHHHHHHHH-HHHH
Q 022992 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT-TSANQCKQKVAQ-YAAE 164 (289)
Q Consensus 87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~-~~~~~~~~~l~~-~~~~ 164 (289)
|.++|+++.++..+-......++....+...+|.++...||..++.+.....-......... ...-..++.++. +|..
T Consensus 90 D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYyk~ 169 (380)
T KOG2908|consen 90 DKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYYKK 169 (380)
T ss_pred cHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999888887766554433 324445666665 4445
Q ss_pred hcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC--CchHHHHHHHHHHHH
Q 022992 165 LEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS--GTREYRLLSDIAASM 242 (289)
Q Consensus 165 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~--~~~e~~~l~~l~~a~ 242 (289)
.|++...-...-+-+.-..-+..+...-....+-+++.-+ .||-. =-|.+.+ .+|.+. ..-+.+.+..++.|+
T Consensus 170 ~~d~a~yYr~~L~YL~~~d~~~l~~se~~~lA~~L~~aAL-LGe~i---yNfGELL-~HPilesL~gT~~eWL~dll~Af 244 (380)
T KOG2908|consen 170 IGDFASYYRHALLYLGCSDIDDLSESEKQDLAFDLSLAAL-LGENI---YNFGELL-AHPILESLKGTNREWLKDLLIAF 244 (380)
T ss_pred HHhHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHH-hcccc---ccHHHHH-hhHHHHHhcCCcHHHHHHHHHHh
Confidence 6676653332222211000001101010111122333322 34310 0122211 122221 112346688999999
Q ss_pred cccCHHHHHHHHHhccccCCC
Q 022992 243 DEEDIAKFTDVVKEFDSMTPL 263 (289)
Q Consensus 243 ~~~d~~~~~~al~~~~~~~~~ 263 (289)
..||...|+.-...|....-+
T Consensus 245 n~Gdl~~f~~l~~~~~~~p~L 265 (380)
T KOG2908|consen 245 NSGDLKRFESLKGVWGKQPDL 265 (380)
T ss_pred ccCCHHHHHHHHHHhccCchH
Confidence 999999999999888874434
No 274
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.51 E-value=0.29 Score=40.93 Aligned_cols=107 Identities=12% Similarity=0.147 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC------CHH------HHHHHHHHHHHHHccC-CHHHHHHHHHH
Q 022992 31 DAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLE------SKH------EAAQAYVDAAHCYKKT-SSNEAISCLEQ 97 (289)
Q Consensus 31 ~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~------~~~------~aa~~~~~~a~~~~~~-~~~~A~~~~~~ 97 (289)
.|.....+-|+-+...|+|.+|..+|..|+.+.+++- ++. ...-.+.|...|+... ++-+++++...
T Consensus 176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se 255 (329)
T KOG0545|consen 176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE 255 (329)
T ss_pred hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence 6788888889999999999999999999999887542 211 0112334444444433 55555555444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 022992 98 AVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ 143 (289)
Q Consensus 98 A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~ 143 (289)
.+..++.+ -++|..-|..+...=+..+|..-|.+++++.+
T Consensus 256 iL~~~~~n------vKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 256 ILRHHPGN------VKAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred HHhcCCch------HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 44433322 23455555555444455555555555555543
No 275
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=94.30 E-value=0.52 Score=40.70 Aligned_cols=127 Identities=11% Similarity=0.160 Sum_probs=89.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcc-C-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022992 40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK-T-SSNEAISCLEQAVNMFCDIGRLSMAARYYKE 117 (289)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~-~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~ 117 (289)
.+..+..+..+.|...|.+|.. .+. ..-..|...|.+-.. . +.+.|...|+.++..|....+ .+..
T Consensus 8 m~~~~r~~g~~~aR~vF~~a~~----~~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~------~~~~ 75 (280)
T PF05843_consen 8 MRFMRRTEGIEAARKVFKRARK----DKR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD------FWLE 75 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC----CCC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH------HHHH
T ss_pred HHHHHHhCChHHHHHHHHHHHc----CCC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH------HHHH
Confidence 3455555668889999999862 111 112356667777433 3 878899999999999886554 6666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992 118 IAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ 181 (289)
Q Consensus 118 la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 181 (289)
-...+...++.+.|...|++++...... .....++.....+=...|+.+...+++++....
T Consensus 76 Y~~~l~~~~d~~~aR~lfer~i~~l~~~---~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 76 YLDFLIKLNDINNARALFERAISSLPKE---KQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHCCTSSCH---HHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhcCch---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6677778899999999999998764332 113457888888888899999999999888643
No 276
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.17 E-value=4.2 Score=36.68 Aligned_cols=134 Identities=10% Similarity=0.043 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 022992 35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAAR 113 (289)
Q Consensus 35 ~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~ 113 (289)
+|.-....|...|+...-..++..-+....--++..+.+...+-+-..|... .++.|-...-++ .|+........|+
T Consensus 171 ~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~--~~pe~~snne~AR 248 (493)
T KOG2581|consen 171 LYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKS--VYPEAASNNEWAR 248 (493)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcc--cCccccccHHHHH
Confidence 3444445566666655555555554444332225566666666666666554 455554443332 3444545558899
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHH
Q 022992 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHK 170 (289)
Q Consensus 114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 170 (289)
.+.-+|.+..-+++|..|.+++-+|+...+........-.+...+..+-..+|++.+
T Consensus 249 Y~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiPe 305 (493)
T KOG2581|consen 249 YLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIPE 305 (493)
T ss_pred HHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCcc
Confidence 999999999999999999999999999888644433333444444445555676664
No 277
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=94.15 E-value=2 Score=44.95 Aligned_cols=147 Identities=16% Similarity=0.102 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-----C---------------------
Q 022992 34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-----S--------------------- 87 (289)
Q Consensus 34 ~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-----~--------------------- 87 (289)
......|..|...|+|.+|+..|..|+++.+..+|+.--|.+++.++.+..-. +
T Consensus 243 R~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~~~s 322 (1185)
T PF08626_consen 243 RLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTSSSS 322 (1185)
T ss_pred hhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccCccC
Confidence 34445678888899999999999999999999998887777877776542100 1
Q ss_pred -------------------------------HHHHHHHHHHHHHHHHhcC------C-HHHHHHHHHHHHHHHHhcC---
Q 022992 88 -------------------------------SNEAISCLEQAVNMFCDIG------R-LSMAARYYKEIAELYESEH--- 126 (289)
Q Consensus 88 -------------------------------~~~A~~~~~~A~~~~~~~g------~-~~~~a~~l~~la~~~~~~g--- 126 (289)
+..-.+.+++++.+|.+.. . ..-...+..+++.++....
T Consensus 323 ~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~~ 402 (1185)
T PF08626_consen 323 PRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLSD 402 (1185)
T ss_pred cccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhccc
Confidence 1122334556666665543 1 1234566677777766655
Q ss_pred -----------------CHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992 127 -----------------NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180 (289)
Q Consensus 127 -----------------~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 180 (289)
...++..+..+++.+--..=.......++..++.+|..+|-..++.=+.+.++.
T Consensus 403 ~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~ 473 (1185)
T PF08626_consen 403 NLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAV 473 (1185)
T ss_pred chhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 677888888888876543334455667888889999888888777776666653
No 278
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=94.11 E-value=0.65 Score=31.50 Aligned_cols=34 Identities=15% Similarity=0.331 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (289)
Q Consensus 111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~ 144 (289)
.|..+...|.-....|+|++|+.+|..|++.+..
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 4455666667777779999999999999998854
No 279
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=93.97 E-value=2.6 Score=35.94 Aligned_cols=114 Identities=13% Similarity=-0.020 Sum_probs=67.0
Q ss_pred HcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 022992 45 LAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES 124 (289)
Q Consensus 45 ~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~ 124 (289)
.+++|++|++.....+..+-+.|....++....-+..+|.+. +...... ...++..++..
T Consensus 2 ~~kky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~-------------------~~~~~~~-~~~rl~~l~~~ 61 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKS-------------------EDPVDEE-SIARLIELISL 61 (260)
T ss_dssp HTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-------------------T---SHH-HHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHc-------------------CCCCCHH-HHHHHHHHHHh
Confidence 467888888888888888888877766666665556666543 2111111 12333444433
Q ss_pred cCCH-HHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 022992 125 EHNI-EQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI 178 (289)
Q Consensus 125 ~g~~-~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 178 (289)
...- ++-..+..+|+.-.+..+.+.+-+..+..+|.++.+.|++.+|..+|-..
T Consensus 62 ~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 62 FPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp S-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred CCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc
Confidence 3221 22345556666655444556677789999999999999999988877433
No 280
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=93.91 E-value=0.64 Score=47.36 Aligned_cols=149 Identities=12% Similarity=0.062 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc-C
Q 022992 31 DAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKL-E-SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI-G 106 (289)
Q Consensus 31 ~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~-~-~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~-g 106 (289)
+-.++|...+.++-..|++++|+..-.++.-+..+. | +.......|.+++...... ....|+..+.++..+..-. |
T Consensus 971 ~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~g 1050 (1236)
T KOG1839|consen 971 EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSG 1050 (1236)
T ss_pred hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccC
Confidence 456677777888889999999999999998887754 2 5567788888888766555 7788888888887665322 2
Q ss_pred -CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCc--cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992 107 -RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV--TTSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (289)
Q Consensus 107 -~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 179 (289)
+....+..-.+++.++...++++.|+++.+.|+.+-....- ...-+.++..++.++..++++..|+.......
T Consensus 1051 e~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~ 1126 (1236)
T KOG1839|consen 1051 EDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTY 1126 (1236)
T ss_pred CCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHH
Confidence 35567778889999998889999999999999997665432 22334567788888888888888887665553
No 281
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=93.75 E-value=0.68 Score=31.29 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=21.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHhccCcc
Q 022992 120 ELYESEHNIEQTIVFFEKAADMFQNEEVT 148 (289)
Q Consensus 120 ~~~~~~g~~~~A~~~y~~A~~~~~~~~~~ 148 (289)
.--...|++++|+++|.+|++.+-...++
T Consensus 14 ~~eD~~gny~eA~~lY~~ale~~~~ekn~ 42 (75)
T cd02680 14 FDEDEKGNAEEAIELYTEAVELCINTSNE 42 (75)
T ss_pred HHhhHhhhHHHHHHHHHHHHHHHHHhcCh
Confidence 33344599999999999999998764333
No 282
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=93.69 E-value=0.6 Score=37.18 Aligned_cols=93 Identities=16% Similarity=0.053 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHH
Q 022992 128 IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQY---HKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQL 204 (289)
Q Consensus 128 ~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 204 (289)
++.|.+.++.+...-+.+ ++.+.+=|.++..+.++ .++.+++++++......-.....-..++.++|.++.
T Consensus 7 FE~ark~aea~y~~nP~D------adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~t 80 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLD------ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYT 80 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-------HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHh------HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 355566666555543332 34556666655554333 344455555432111100001122345667777665
Q ss_pred cc----CC-------HHHHHHHHHHHhhcCCCC
Q 022992 205 CK----GD-------VVAITNALERYQDMDPTF 226 (289)
Q Consensus 205 ~~----gd-------~~~A~~~~~~~~~~~~~~ 226 (289)
.. +| +.+|..+|+++..+.|..
T Consensus 81 s~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 81 SLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 43 23 456677777777777663
No 283
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.94 E-value=5.9 Score=34.60 Aligned_cols=153 Identities=13% Similarity=0.162 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccc
Q 022992 108 LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNL 187 (289)
Q Consensus 108 ~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 187 (289)
...-.....++|.+|.+.++..+|..+-.++.=+.....+..-....-.=.+.++-..++|-+|...|-+.......+..
T Consensus 140 ~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~~ki~~e~ 219 (399)
T KOG1497|consen 140 VEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQRKIVDES 219 (399)
T ss_pred hHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 33445567788999999999999999999987665544433333333333455566678898998888777654433321
Q ss_pred cccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHH-H-HcccCHHHHHHHHHhccccCCCc
Q 022992 188 LKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAA-S-MDEEDIAKFTDVVKEFDSMTPLD 264 (289)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~-a-~~~~d~~~~~~al~~~~~~~~~d 264 (289)
.-..++.++..|-+..+-.++=.+.+.. +-.+++...-+-+.++..+.. - +...+.+.|..-+..+...+..|
T Consensus 220 ---~~~~aL~~a~~CtlLA~~gpqrsr~Lat-lfkder~~~l~~y~ileKmyl~riI~k~el~ef~~~L~pHQka~~~d 294 (399)
T KOG1497|consen 220 ---ERLEALKKALQCTLLASAGPQRSRMLAT-LFKDERCQKLPAYGILEKMYLERIIRKEELQEFEAFLQPHQKAHTMD 294 (399)
T ss_pred ---HHHHHHHHhHhheeecCCChHHHHHHHH-HhcCcccccccchHHHHHHHHHHHhcchhHHHHHHHhcchhhhcccC
Confidence 1122344455554433322222233322 223344332222334444432 1 23555677777777766666443
No 284
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.90 E-value=0.91 Score=43.03 Aligned_cols=96 Identities=13% Similarity=0.144 Sum_probs=66.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHH
Q 022992 119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLN 198 (289)
Q Consensus 119 a~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 198 (289)
|.-+.+..+|..++++|..++..+..+.....-+...+.+..+|..+.+.+.|.++++++.....+.+. ..-.
T Consensus 361 A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l----~q~~--- 433 (872)
T KOG4814|consen 361 AKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPL----CQLL--- 433 (872)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHH----HHHH---
Confidence 333444489999999999999998877655555778899999999999999999999999644322211 1111
Q ss_pred HHHHHHccCCHHHHHHHHHHHhh
Q 022992 199 AGICQLCKGDVVAITNALERYQD 221 (289)
Q Consensus 199 ~~~~~l~~gd~~~A~~~~~~~~~ 221 (289)
+.......|...+|..+......
T Consensus 434 ~~~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 434 MLQSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh
Confidence 12223445677777777666543
No 285
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.70 E-value=6 Score=34.05 Aligned_cols=90 Identities=16% Similarity=0.155 Sum_probs=65.3
Q ss_pred ccCCHHHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhc---cCcc-----chHH
Q 022992 84 KKTSSNEAISCLEQAVNMFC--DIGRLSMAARYYKEIAELYESEH-NIEQTIVFFEKAADMFQN---EEVT-----TSAN 152 (289)
Q Consensus 84 ~~~~~~~A~~~~~~A~~~~~--~~g~~~~~a~~l~~la~~~~~~g-~~~~A~~~y~~A~~~~~~---~~~~-----~~~~ 152 (289)
.+.+++.|..++.|+-.+.. ........++.+.++|.-....+ +++.|+.++++|.++... .... ....
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 34478888888888877764 11233457888999999998888 999999999999999744 1111 3345
Q ss_pred HHHHHHHHHHHHhcCHHHHHH
Q 022992 153 QCKQKVAQYAAELEQYHKSIE 173 (289)
Q Consensus 153 ~~~~~l~~~~~~~g~~~~A~~ 173 (289)
.++..++.++...+.++...+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~k 105 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEK 105 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHH
Confidence 678888899988877654433
No 286
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=92.58 E-value=1.9 Score=31.44 Aligned_cols=93 Identities=16% Similarity=0.100 Sum_probs=52.3
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHHHccC-----CHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 022992 43 FKLAKSWDKAGATYVKLANCHLKLESK----HEAAQAYVDAAHCYKKT-----SSNEAISCLEQAVNMFCDIGRLSMAAR 113 (289)
Q Consensus 43 ~~~~g~~~~A~~~~~~a~~~~~~~~~~----~~aa~~~~~~a~~~~~~-----~~~~A~~~~~~A~~~~~~~g~~~~~a~ 113 (289)
+...|+.-+|++..+..+....+..+. ..++..+..+|...... -+-.++++|.++..+.+.. |.
T Consensus 6 ~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~------A~ 79 (111)
T PF04781_consen 6 YFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDS------AH 79 (111)
T ss_pred HHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhH------HH
Confidence 345677777777777766655443321 12333333333333322 1245777777777666543 77
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 022992 114 YYKEIAELYESEHNIEQTIVFFEKAADM 141 (289)
Q Consensus 114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~ 141 (289)
.+..+|.-+...--|++++.-.++++.+
T Consensus 80 ~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 80 SLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 7877777766545566666666666544
No 287
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.37 E-value=0.29 Score=44.85 Aligned_cols=113 Identities=12% Similarity=0.113 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC-cc-ch--HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-HH--hhcc
Q 022992 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEE-VT-TS--ANQCKQKVAQYAAELEQYHKSIEIYEEIAR-QS--LNNN 186 (289)
Q Consensus 114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~-~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~-~~--~~~~ 186 (289)
.+.--+..+...|++.+|++.+... .+.+..| .. .. ....++++|.|+..+|.|.-++.+|.+++. .+ +..+
T Consensus 242 ~l~LKsq~eY~~gn~~kA~KlL~~s-ni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g 320 (696)
T KOG2471|consen 242 ALLLKSQLEYAHGNHPKAMKLLLVS-NIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNG 320 (696)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHhc-ccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 3333444444558888888877544 2333333 11 11 223348999999999999999999999973 11 1111
Q ss_pred c--------cccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992 187 L--------LKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS 227 (289)
Q Consensus 187 ~--------~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~ 227 (289)
. +.-.....+++.|+.++..|.+..|-.||.++..++.+-+
T Consensus 321 ~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nP 369 (696)
T KOG2471|consen 321 LKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNP 369 (696)
T ss_pred CCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCc
Confidence 0 0111235677889999999999999999999988776654
No 288
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.33 E-value=2.4 Score=37.26 Aligned_cols=144 Identities=18% Similarity=0.147 Sum_probs=90.4
Q ss_pred CCC-CCHHHHHHHHHHHHH--------------HHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH--HHHHHccC
Q 022992 24 LFG-SKYEDAADLFDKAAN--------------SFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVD--AAHCYKKT 86 (289)
Q Consensus 24 ~~~-~~~~~A~~~~~~A~~--------------~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~--~a~~~~~~ 86 (289)
.|+ |+..+|+...++... ++...|+.+.-.+.+++.+.-... +-| . -.|.+ .+-...+.
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~-dlp--~-~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNA-DLP--C-YSYVHGMYAFGLEEC 188 (491)
T ss_pred hhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCC-CCc--H-HHHHHHHHHhhHHHh
Confidence 576 888888877777642 233345555555555444332110 111 0 01111 11112233
Q ss_pred -CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHh
Q 022992 87 -SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL 165 (289)
Q Consensus 87 -~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (289)
-+++|.+...+|+++.+- -+.+-...+.+++..|++.++.++..+.-...+. + -..++..+...+.++.+.
T Consensus 189 g~y~dAEk~A~ralqiN~~------D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~-s-~mlasHNyWH~Al~~iE~ 260 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQINRF------DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ-S-WMLASHNYWHTALFHIEG 260 (491)
T ss_pred ccchhHHHHHHhhccCCCc------chHHHHHHHHHHHhcchhhhHHHHHHhcccchhh-h-hHHHhhhhHHHHHhhhcc
Confidence 678888888888888542 2235566788888889999999999887766552 2 223445577888899999
Q ss_pred cCHHHHHHHHHHHH
Q 022992 166 EQYHKSIEIYEEIA 179 (289)
Q Consensus 166 g~~~~A~~~~~~a~ 179 (289)
+.|+.|+++|.+-+
T Consensus 261 aeye~aleIyD~ei 274 (491)
T KOG2610|consen 261 AEYEKALEIYDREI 274 (491)
T ss_pred cchhHHHHHHHHHH
Confidence 99999999998776
No 289
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=91.95 E-value=0.37 Score=25.07 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992 153 QCKQKVAQYAAELEQYHKSIEIYEEIAR 180 (289)
Q Consensus 153 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 180 (289)
.++..+|.++..+|++++|+..|++++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3678899999999999999999998863
No 290
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.84 E-value=1.6 Score=41.53 Aligned_cols=98 Identities=9% Similarity=0.144 Sum_probs=72.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHH
Q 022992 76 YVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCK 155 (289)
Q Consensus 76 ~~~~a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~ 155 (289)
|+.++..++..+|..++++|...+..+........-++...+++.||..+.+.|.|.++|++|-+..++.- -+.
T Consensus 358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~------l~q 431 (872)
T KOG4814|consen 358 WNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSP------LCQ 431 (872)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccH------HHH
Confidence 34445555555899999999999998886655556699999999999999999999999999977654421 223
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHH
Q 022992 156 QKVAQYAAELEQYHKSIEIYEEIA 179 (289)
Q Consensus 156 ~~l~~~~~~~g~~~~A~~~~~~a~ 179 (289)
..+-.+...-|.-++|+.+.....
T Consensus 432 ~~~~~~~~~E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 432 LLMLQSFLAEDKSEEALTCLQKIK 455 (872)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHH
Confidence 334445556677788887766554
No 291
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=91.63 E-value=8.8 Score=33.66 Aligned_cols=139 Identities=12% Similarity=0.155 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCH
Q 022992 50 DKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNI 128 (289)
Q Consensus 50 ~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~ 128 (289)
++-++-+.+.++-..+..-..+...++.+.+..|-+. |-+.|.+.+++..+--...|..-..--+...+|..|.. .
T Consensus 81 eeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D---~ 157 (393)
T KOG0687|consen 81 EEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLD---H 157 (393)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhcc---H
Confidence 4444555555555554333456677888999999776 99999999998887777778777777788888888864 4
Q ss_pred HHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccc
Q 022992 129 EQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG 191 (289)
Q Consensus 129 ~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 191 (289)
+-.-+..++|=.++++.|+=...+..-.--|.......+|.+|..+|-+.+..........|.
T Consensus 158 ~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~ 220 (393)
T KOG0687|consen 158 DLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSYELMSYE 220 (393)
T ss_pred HHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccceecccHH
Confidence 555567778888888888766666655666767777789999999998887444333344443
No 292
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.53 E-value=0.33 Score=44.47 Aligned_cols=85 Identities=8% Similarity=0.037 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH-HHhc--cC---------ccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992 113 RYYKEIAELYESEHNIEQTIVFFEKAAD-MFQN--EE---------VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180 (289)
Q Consensus 113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~-~~~~--~~---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 180 (289)
..++++|-++...|.|.-++.+|.+|+. ...+ .| ......+++.+.|..+...|+.-.|.++|.++..
T Consensus 284 if~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~ 363 (696)
T KOG2471|consen 284 IFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH 363 (696)
T ss_pred eeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
Confidence 3467999999999999999999999996 2221 12 1123447889999999999999999999999986
Q ss_pred HHhhccccccchhhHHHHHHHHHH
Q 022992 181 QSLNNNLLKYGVKGHLLNAGICQL 204 (289)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~l 204 (289)
....+| ..|++++.|+.
T Consensus 364 vfh~nP-------rlWLRlAEcCi 380 (696)
T KOG2471|consen 364 VFHRNP-------RLWLRLAECCI 380 (696)
T ss_pred HHhcCc-------HHHHHHHHHHH
Confidence 654443 34666665554
No 293
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=91.30 E-value=11 Score=34.26 Aligned_cols=154 Identities=10% Similarity=-0.009 Sum_probs=104.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHH
Q 022992 25 FGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFC 103 (289)
Q Consensus 25 ~~~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~ 103 (289)
|++++...++-.-+=+.++.....+..|.....+..--..+..+...-...+..++.++.++ ..-.+..+.-++.....
T Consensus 265 ~g~d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~s 344 (482)
T KOG4322|consen 265 FGGDYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRS 344 (482)
T ss_pred hcchHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHH
Confidence 45777777776666777777888888888887776644444445556667777788888777 55666677667776666
Q ss_pred hcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHH-------HHHHHHHHHHHhcCHHHHHHHHH
Q 022992 104 DIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQ-------CKQKVAQYAAELEQYHKSIEIYE 176 (289)
Q Consensus 104 ~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~ 176 (289)
.-......+.+-..++..+.-+|-++.|......|+...-..|-....+. |+..-+..+ ...+.+.+..+.+
T Consensus 345 ey~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~~L~ 423 (482)
T KOG4322|consen 345 EYSLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPRYLD 423 (482)
T ss_pred HhccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHHHHH
Confidence 66667777778888888888889999999999999987665553222221 221111111 3445666666666
Q ss_pred HHH
Q 022992 177 EIA 179 (289)
Q Consensus 177 ~a~ 179 (289)
++.
T Consensus 424 ~A~ 426 (482)
T KOG4322|consen 424 LAQ 426 (482)
T ss_pred HHH
Confidence 653
No 294
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.26 E-value=8.9 Score=32.99 Aligned_cols=108 Identities=9% Similarity=0.139 Sum_probs=65.7
Q ss_pred hcCCHHHHHHHHHHHHHHHhcc--CccchHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHhh----ccc-cccch-h-
Q 022992 124 SEHNIEQTIVFFEKAADMFQNE--EVTTSANQCKQKVAQYAAELE-QYHKSIEIYEEIARQSLN----NNL-LKYGV-K- 193 (289)
Q Consensus 124 ~~g~~~~A~~~y~~A~~~~~~~--~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~----~~~-~~~~~-~- 193 (289)
.+|+.+.|..+|.|+-.+.... ......++.+.++|.-....+ ++++|+..++++...... ... ..+.. .
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 3499999999999998876421 122455678889998888999 999999999999744211 111 01100 0
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchH
Q 022992 194 GHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTRE 231 (289)
Q Consensus 194 ~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e 231 (289)
..+..++.+++..++.+...++.+....+...+++..+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~ 122 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPE 122 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcH
Confidence 12233456777777666554444433223334443333
No 295
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=91.03 E-value=3.6 Score=28.04 Aligned_cols=65 Identities=12% Similarity=0.079 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (289)
Q Consensus 112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 179 (289)
++-...-|.-+....+..+|+..+.++++.... +.....++-.+..+|.+.|+|.+++++--+-+
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~---~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITD---REDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555668899999999999987654 33455677778889999999999999865544
No 296
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=90.79 E-value=0.82 Score=30.23 Aligned_cols=33 Identities=15% Similarity=0.169 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (289)
Q Consensus 112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~ 144 (289)
|..+.+.|.-..+.|++++|+.+|.+|++.+..
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~ 37 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIEYLMQ 37 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 444556666667778888888888888887653
No 297
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=90.68 E-value=0.62 Score=26.94 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992 153 QCKQKVAQYAAELEQYHKSIEIYEEIARQ 181 (289)
Q Consensus 153 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 181 (289)
+++..||++-...++|++|+.-|++++..
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 57899999999999999999999999743
No 298
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.64 E-value=11 Score=33.07 Aligned_cols=72 Identities=13% Similarity=0.211 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHH-HHHhc---------------------------CCHHHHHHHHHHHHHHHHhc------CCHHHHH
Q 022992 87 SSNEAISCLEQAVN-MFCDI---------------------------GRLSMAARYYKEIAELYESE------HNIEQTI 132 (289)
Q Consensus 87 ~~~~A~~~~~~A~~-~~~~~---------------------------g~~~~~a~~l~~la~~~~~~------g~~~~A~ 132 (289)
+..+|+..++..+. ..... .+....++++..+|...... +..++++
T Consensus 199 ~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~ 278 (352)
T PF02259_consen 199 EQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEIL 278 (352)
T ss_pred CHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHH
Confidence 56788888887777 22211 12356788999999998888 8899999
Q ss_pred HHHHHHHHHHhccCccchHHHHHHHHHHHHHH
Q 022992 133 VFFEKAADMFQNEEVTTSANQCKQKVAQYAAE 164 (289)
Q Consensus 133 ~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 164 (289)
..|.+|+.+.+... .++...|.++..
T Consensus 279 ~~~~~a~~~~~~~~------k~~~~~a~~~~~ 304 (352)
T PF02259_consen 279 KYYKEATKLDPSWE------KAWHSWALFNDK 304 (352)
T ss_pred HHHHHHHHhChhHH------HHHHHHHHHHHH
Confidence 99999999876543 355556655543
No 299
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=90.43 E-value=11 Score=34.48 Aligned_cols=107 Identities=11% Similarity=-0.007 Sum_probs=81.6
Q ss_pred HHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHHHhcc-
Q 022992 75 AYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNI-------EQTIVFFEKAADMFQNE- 145 (289)
Q Consensus 75 ~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~-------~~A~~~y~~A~~~~~~~- 145 (289)
.+..+|.++... |++.|...|+.+..=|.....+.-.|.++.-+|.++...+.. +....+++.|+..|...
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~ 289 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA 289 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence 345677777666 999999999999988877777777788888888877665532 46777888888888772
Q ss_pred ----CccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992 146 ----EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ 181 (289)
Q Consensus 146 ----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 181 (289)
..+..+..+....+.++...|.|.+|...+-+....
T Consensus 290 ~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 290 LPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred ccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 223456678888888998999999999888777644
No 300
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=90.41 E-value=0.29 Score=45.81 Aligned_cols=93 Identities=15% Similarity=0.116 Sum_probs=73.5
Q ss_pred HHHHHHcc-C-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHH
Q 022992 78 DAAHCYKK-T-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCK 155 (289)
Q Consensus 78 ~~a~~~~~-~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~ 155 (289)
+.+-+|.+ . ++..|+.|+.+|+..-+...+ -.++++|.++...|-...|..++.+++.+... ..-.+
T Consensus 611 n~aglywr~~gn~~~a~~cl~~a~~~~p~~~~-----v~~v~la~~~~~~~~~~da~~~l~q~l~~~~s------epl~~ 679 (886)
T KOG4507|consen 611 NEAGLYWRAVGNSTFAIACLQRALNLAPLQQD-----VPLVNLANLLIHYGLHLDATKLLLQALAINSS------EPLTF 679 (886)
T ss_pred ecccceeeecCCcHHHHHHHHHHhccChhhhc-----ccHHHHHHHHHHhhhhccHHHHHHHHHhhccc------CchHH
Confidence 33445543 3 899999999999877655443 35788888888888889999999999998632 22467
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992 156 QKVAQYAAELEQYHKSIEIYEEIARQ 181 (289)
Q Consensus 156 ~~l~~~~~~~g~~~~A~~~~~~a~~~ 181 (289)
..+|..+..+.+.+.|++.|.++...
T Consensus 680 ~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 680 LSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred HhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 88999999999999999999999744
No 301
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=90.02 E-value=3.8 Score=27.82 Aligned_cols=33 Identities=15% Similarity=0.288 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (289)
Q Consensus 112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~ 144 (289)
|..+..-|.-....|++++|+.+|.+|++.+..
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~ 38 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQ 38 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 344555566667779999999999999998764
No 302
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.82 E-value=0.46 Score=24.74 Aligned_cols=22 Identities=5% Similarity=0.015 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHH
Q 022992 155 KQKVAQYAAELEQYHKSIEIYE 176 (289)
Q Consensus 155 ~~~l~~~~~~~g~~~~A~~~~~ 176 (289)
...+|.++...|++++|...++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445555555555555554443
No 303
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.67 E-value=9.4 Score=36.44 Aligned_cols=116 Identities=14% Similarity=0.173 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHH
Q 022992 88 SNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES-----EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYA 162 (289)
Q Consensus 88 ~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~-----~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~ 162 (289)
...|..+++.+...- -......+|.++.. ..|.++|+.+|+.|+.-+...-.. .-..+...+|.+|
T Consensus 228 ~~~a~~~~~~~a~~g--------~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~-~~~~a~~~lg~~Y 298 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG--------HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATK-GLPPAQYGLGRLY 298 (552)
T ss_pred hhHHHHHHHHHHhhc--------chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhh-cCCccccHHHHHH
Confidence 456777777765542 23355666777665 258999999999998832221100 0112467788888
Q ss_pred HHh----c-CHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccC---CHHHHHHHHHHHhh
Q 022992 163 AEL----E-QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKG---DVVAITNALERYQD 221 (289)
Q Consensus 163 ~~~----g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~g---d~~~A~~~~~~~~~ 221 (289)
..- . ++..|+.+|.++... +.....+.+|.++.... |...|...|..+..
T Consensus 299 ~~g~~~~~~d~~~A~~~~~~aA~~---------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~ 356 (552)
T KOG1550|consen 299 LQGLGVEKIDYEKALKLYTKAAEL---------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK 356 (552)
T ss_pred hcCCCCccccHHHHHHHHHHHHhc---------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHH
Confidence 764 2 789999999999622 22334466777765433 56677777777643
No 304
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=89.66 E-value=1.3 Score=29.93 Aligned_cols=35 Identities=31% Similarity=0.321 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (289)
Q Consensus 110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~ 144 (289)
..|..+...|.-+...|++.+|+.+|++|++++.+
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q 38 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQ 38 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 34555666667777778888888888888887654
No 305
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.61 E-value=0.48 Score=24.67 Aligned_cols=25 Identities=8% Similarity=0.117 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Q 022992 113 RYYKEIAELYESEHNIEQTIVFFEK 137 (289)
Q Consensus 113 ~~l~~la~~~~~~g~~~~A~~~y~~ 137 (289)
.+...+|.++...|++++|...+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 5678999999999999999998863
No 306
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=89.50 E-value=5.4 Score=35.88 Aligned_cols=142 Identities=13% Similarity=0.089 Sum_probs=80.1
Q ss_pred CCHHHHHHHHHHHHH------------------HHHH---cCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcc
Q 022992 27 SKYEDAADLFDKAAN------------------SFKL---AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK 85 (289)
Q Consensus 27 ~~~~~A~~~~~~A~~------------------~~~~---~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~ 85 (289)
.||+.-+.+.+..-. ++-. .|+.++|.+.+..++.--.. .....+--+|.+|..
T Consensus 155 qdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~-----~~~d~~gL~GRIyKD 229 (374)
T PF13281_consen 155 QDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDEN-----PDPDTLGLLGRIYKD 229 (374)
T ss_pred hhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCC-----CChHHHHHHHHHHHH
Confidence 678887777776632 2223 78888888888876433221 223455666777654
Q ss_pred C----------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HHHhccCccchH
Q 022992 86 T----------SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAA----DMFQNEEVTTSA 151 (289)
Q Consensus 86 ~----------~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~----~~~~~~~~~~~~ 151 (289)
. .+++|+.+|.++-++-+.. ..-.|++.++...|...+...-.++.. .+.-+.|.....
T Consensus 230 ~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-------Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 230 LFLESNFTDRESLDKAIEWYRKGFEIEPDY-------YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHcCccchHHHHHHHHHHHHHHcCCccc-------cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 3 3577888888876665321 123345555555454333332222222 222222322222
Q ss_pred HHHH--HHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992 152 NQCK--QKVAQYAAELEQYHKSIEIYEEIAR 180 (289)
Q Consensus 152 ~~~~--~~l~~~~~~~g~~~~A~~~~~~a~~ 180 (289)
.+.+ -.++.+.+..|++++|+..++++..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 2221 2344566788999999999999873
No 307
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=89.47 E-value=15 Score=32.93 Aligned_cols=118 Identities=13% Similarity=0.055 Sum_probs=55.9
Q ss_pred HccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHH
Q 022992 83 YKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYA 162 (289)
Q Consensus 83 ~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~ 162 (289)
+.++++.+|.....++.+. .+.-.-++...+..-...||++.|=.+..+|.+...... -.+....+.+.
T Consensus 95 l~eG~~~qAEkl~~rnae~------~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~-----l~v~ltrarll 163 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAEH------GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDT-----LAVELTRARLL 163 (400)
T ss_pred HhcCcHHHHHHHHHHhhhc------CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCch-----HHHHHHHHHHH
Confidence 3444555555555543221 223344555555555555666666666666655422111 12334455555
Q ss_pred HHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHH
Q 022992 163 AELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALER 218 (289)
Q Consensus 163 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~ 218 (289)
...|+++.|.....+.... . + .....+.-+..+|+..|++......+..
T Consensus 164 l~~~d~~aA~~~v~~ll~~--~-p----r~~~vlrLa~r~y~~~g~~~~ll~~l~~ 212 (400)
T COG3071 164 LNRRDYPAARENVDQLLEM--T-P----RHPEVLRLALRAYIRLGAWQALLAILPK 212 (400)
T ss_pred HhCCCchhHHHHHHHHHHh--C-c----CChHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 6666666666655555321 1 1 1112222234556666665554444444
No 308
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=88.97 E-value=1.3 Score=30.35 Aligned_cols=37 Identities=14% Similarity=-0.015 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 022992 109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE 145 (289)
Q Consensus 109 ~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~ 145 (289)
...|....+.|..+.+.|+.++|+.+|+++++...+.
T Consensus 5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg 41 (79)
T cd02679 5 YKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEG 41 (79)
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHH
Confidence 3456667777888888899999999999999987754
No 309
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=88.89 E-value=0.82 Score=39.02 Aligned_cols=43 Identities=14% Similarity=0.258 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022992 91 AISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAA 139 (289)
Q Consensus 91 A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~ 139 (289)
|..||.+|..+.+..|+ .++.+|.++...|+.=.|+-+|-|++
T Consensus 1 A~~~Y~~A~~l~P~~G~------p~nQLAvl~~~~~~~l~avy~y~Rsl 43 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGN------PYNQLAVLASYQGDDLDAVYYYIRSL 43 (278)
T ss_dssp HHHHHHHHHHH-TTBSH------HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCC------cccchhhhhccccchHHHHHHHHHHH
Confidence 67788888888888887 78888888887788888888888886
No 310
>PRK10941 hypothetical protein; Provisional
Probab=88.64 E-value=3.2 Score=35.64 Aligned_cols=78 Identities=9% Similarity=0.060 Sum_probs=65.4
Q ss_pred HhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992 103 CDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS 182 (289)
Q Consensus 103 ~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 182 (289)
....+..-..+.+.++=.+|.+.++++.|+.+.+..+.+.+... .-+..-|.+|.++|.+..|..-++..+..+
T Consensus 172 ~~a~~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp------~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 172 DEADNIEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDP------YEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 34455667889999999999999999999999999999987643 235778999999999999999999988777
Q ss_pred hhcc
Q 022992 183 LNNN 186 (289)
Q Consensus 183 ~~~~ 186 (289)
.+++
T Consensus 246 P~dp 249 (269)
T PRK10941 246 PEDP 249 (269)
T ss_pred CCch
Confidence 6554
No 311
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=88.53 E-value=2.6 Score=26.38 Aligned_cols=42 Identities=14% Similarity=0.216 Sum_probs=30.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHH
Q 022992 196 LLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAA 240 (289)
Q Consensus 196 ~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~ 240 (289)
++.+++.+...|++..|++..+..+++.|.. .++..|..++.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N---~Qa~~L~~~i~ 45 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDN---RQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS----HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc---HHHHHHHHHHH
Confidence 4556677888999999999999999988774 45555555543
No 312
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=87.97 E-value=27 Score=33.78 Aligned_cols=58 Identities=16% Similarity=0.189 Sum_probs=35.8
Q ss_pred HHHHhcCCHHHHHH------HHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992 120 ELYESEHNIEQTIV------FFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (289)
Q Consensus 120 ~~~~~~g~~~~A~~------~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 179 (289)
.++...|+..+|+. +.+-+++|.++... ..-+.+..++..+..+..+.-|.++|.+..
T Consensus 711 EmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~--~ere~l~~~a~ylk~l~~~gLAaeIF~k~g 774 (1081)
T KOG1538|consen 711 EMLISAGEHVKAIEICGDHGWVDMLIDIARKLDK--AEREPLLLCATYLKKLDSPGLAAEIFLKMG 774 (1081)
T ss_pred HHhhcccchhhhhhhhhcccHHHHHHHHHhhcch--hhhhHHHHHHHHHhhccccchHHHHHHHhc
Confidence 33344466666654 34455555554432 223466777777788888888888888774
No 313
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=87.51 E-value=6.7 Score=26.36 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (289)
Q Consensus 112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~ 144 (289)
|..+..-|.-....|++++|+.+|.+|++.+..
T Consensus 6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~ 38 (75)
T cd02678 6 AIELVKKAIEEDNAGNYEEALRLYQHALEYFMH 38 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 334445556666779999999999999998754
No 314
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=87.20 E-value=0.88 Score=39.41 Aligned_cols=70 Identities=19% Similarity=0.175 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 022992 70 HEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE 145 (289)
Q Consensus 70 ~~aa~~~~~~a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~ 145 (289)
.++..++..++..++.+..++|...|+.|+.+.+.+-+ ++..+|...+...+.-+|-.+|-+|+.+.+..
T Consensus 114 kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~------~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~n 183 (472)
T KOG3824|consen 114 KEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQ------ILIEMGQFREMHNEIVEADQCYVKALTISPGN 183 (472)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHH------HHHHHhHHHHhhhhhHhhhhhhheeeeeCCCc
Confidence 44556677777777777888999999999888776655 88889998888888888889999998876643
No 315
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.15 E-value=0.36 Score=42.21 Aligned_cols=87 Identities=18% Similarity=0.074 Sum_probs=54.5
Q ss_pred HcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 022992 45 LAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYE 123 (289)
Q Consensus 45 ~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~ 123 (289)
..|.++.|++.|..++++-. ..+..|..-+.++.++ .+..|+.=|..|+++-.+.- .-+---|....
T Consensus 126 n~G~~~~ai~~~t~ai~lnp------~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa------~~ykfrg~A~r 193 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNP------PLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSA------KGYKFRGYAER 193 (377)
T ss_pred cCcchhhhhcccccccccCC------chhhhcccccceeeeccCCchhhhhhhhhhccCcccc------cccchhhHHHH
Confidence 45667777777777776633 2344555556666666 77777777777777755332 23333444445
Q ss_pred hcCCHHHHHHHHHHHHHHHh
Q 022992 124 SEHNIEQTIVFFEKAADMFQ 143 (289)
Q Consensus 124 ~~g~~~~A~~~y~~A~~~~~ 143 (289)
.+|+.++|...+..|+.+.-
T Consensus 194 llg~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 194 LLGNWEEAAHDLALACKLDY 213 (377)
T ss_pred HhhchHHHHHHHHHHHhccc
Confidence 55777777777777776643
No 316
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=86.36 E-value=7.9 Score=25.99 Aligned_cols=34 Identities=15% Similarity=0.198 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (289)
Q Consensus 111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~ 144 (289)
.|..+..-|.-....|++++|+.+|.+|++.+..
T Consensus 7 ~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 7 KAKELISKALKADEAGDYEEALELYKKAIEYLLE 40 (77)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3444555667777789999999999999998764
No 317
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=86.23 E-value=23 Score=31.12 Aligned_cols=73 Identities=11% Similarity=0.064 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992 106 GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180 (289)
Q Consensus 106 g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 180 (289)
..+...+.++..++.+....|.++.|...+.++.......... .+.+...-+.++...|+..+|+..+++.+.
T Consensus 140 ~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~--~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 140 LLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL--LPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred cchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC--CcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3477888999999999999999999999999988765333221 234667778889999999999999988875
No 318
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.13 E-value=0.48 Score=41.50 Aligned_cols=85 Identities=15% Similarity=0.133 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHc
Q 022992 126 HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC 205 (289)
Q Consensus 126 g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~ 205 (289)
|.+++||++|.+|+++-+. .+..+.+-+.+++++++...|++-|..++....+. ++.+-+ .|..+..
T Consensus 128 G~~~~ai~~~t~ai~lnp~------~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds------a~~ykf-rg~A~rl 194 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPP------LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS------AKGYKF-RGYAERL 194 (377)
T ss_pred cchhhhhcccccccccCCc------hhhhcccccceeeeccCCchhhhhhhhhhccCccc------ccccch-hhHHHHH
Confidence 6677777777777765432 23455666777777777777777776665332111 111111 2445556
Q ss_pred cCCHHHHHHHHHHHhhcC
Q 022992 206 KGDVVAITNALERYQDMD 223 (289)
Q Consensus 206 ~gd~~~A~~~~~~~~~~~ 223 (289)
+|+++.|...|..+++++
T Consensus 195 lg~~e~aa~dl~~a~kld 212 (377)
T KOG1308|consen 195 LGNWEEAAHDLALACKLD 212 (377)
T ss_pred hhchHHHHHHHHHHHhcc
Confidence 677777777777766643
No 319
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=86.04 E-value=29 Score=32.18 Aligned_cols=52 Identities=10% Similarity=0.040 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHH
Q 022992 153 QCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY 219 (289)
Q Consensus 153 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~ 219 (289)
..+.+||+.....|+++-|.++|+++. .+..+.+.|...||.+.-.+..+.+
T Consensus 348 ~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------------d~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 348 EKWKQLGDEALRQGNIELAEECYQKAK---------------DFSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHCT----------------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhc---------------CccccHHHHHHhCCHHHHHHHHHHH
Confidence 488999999999999999999998773 1233555667777776655555544
No 320
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.04 E-value=2.2 Score=34.73 Aligned_cols=59 Identities=22% Similarity=0.304 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 022992 73 AQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIV 133 (289)
Q Consensus 73 a~~~~~~a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~ 133 (289)
+.....+|..|.+.|+++++..+.++++++....++. ...+..++.++..+++++.|--
T Consensus 141 ~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n--~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 141 AELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFN--PEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCC--HHHHHHHHHHHHHhcchhhhhh
Confidence 5566778888888899999999999999997664433 6689999999999999998753
No 321
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=85.98 E-value=2.6 Score=26.34 Aligned_cols=33 Identities=6% Similarity=-0.064 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 022992 113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNE 145 (289)
Q Consensus 113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~ 145 (289)
.++.-+|..+..+|+|++|..+.+.++++-+.+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 467778888888888888888888888876543
No 322
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=85.80 E-value=8.4 Score=28.73 Aligned_cols=65 Identities=9% Similarity=0.088 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCcc---------chHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992 115 YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT---------TSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (289)
Q Consensus 115 l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 179 (289)
+..+|....+.+++=.++-+|++|+.+.++.... ....-...+++.++...|+.+=.++|++-+.
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlAS 77 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLAS 77 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHH
Confidence 4567777777899999999999999987765311 1111235688999999999999999987764
No 323
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=85.74 E-value=2.5 Score=35.99 Aligned_cols=43 Identities=12% Similarity=0.121 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992 131 TIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (289)
Q Consensus 131 A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 179 (289)
|..+|.+|+.+.+..| ..++++|.+....|+.-.|+=+|-+++
T Consensus 1 A~~~Y~~A~~l~P~~G------~p~nQLAvl~~~~~~~l~avy~y~Rsl 43 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNG------NPYNQLAVLASYQGDDLDAVYYYIRSL 43 (278)
T ss_dssp HHHHHHHHHHH-TTBS------HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCC------CcccchhhhhccccchHHHHHHHHHHH
Confidence 6889999999999998 478999999999999999998888886
No 324
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=85.66 E-value=25 Score=31.11 Aligned_cols=158 Identities=11% Similarity=0.122 Sum_probs=90.9
Q ss_pred HhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHH-HH
Q 022992 123 ESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNA-GI 201 (289)
Q Consensus 123 ~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~ 201 (289)
++.++.++|+++.++..+-......+.....+...++.++...|+..++.+...+.-...-.-......+...|+.. ..
T Consensus 86 ~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssq 165 (380)
T KOG2908|consen 86 EQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQ 165 (380)
T ss_pred HHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHH
Confidence 34468999999999999988887776666777888999999999999999998887532111111122233334444 45
Q ss_pred HHHccCCHHHHHHHHHHHhhcC--CCCCCchHHHHHHHHHHHHcccC-HHHHHHHHHhccccCCCchhHHHHHHHHHHhc
Q 022992 202 CQLCKGDVVAITNALERYQDMD--PTFSGTREYRLLSDIAASMDEED-IAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKL 278 (289)
Q Consensus 202 ~~l~~gd~~~A~~~~~~~~~~~--~~~~~~~e~~~l~~l~~a~~~~d-~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~~ 278 (289)
.|...||+..+-...=.|+.+. ..++.+........|+.+--.|+ .=.|.+.+.. +.+..+--.+..-+..+-.+.
T Consensus 166 Yyk~~~d~a~yYr~~L~YL~~~d~~~l~~se~~~lA~~L~~aALLGe~iyNfGELL~H-PilesL~gT~~eWL~dll~Af 244 (380)
T KOG2908|consen 166 YYKKIGDFASYYRHALLYLGCSDIDDLSESEKQDLAFDLSLAALLGENIYNFGELLAH-PILESLKGTNREWLKDLLIAF 244 (380)
T ss_pred HHHHHHhHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHhccccccHHHHHhh-HHHHHhcCCcHHHHHHHHHHh
Confidence 5667788877655554555432 22333443344444554433444 3333343333 333333323333344444444
Q ss_pred ccc
Q 022992 279 KAK 281 (289)
Q Consensus 279 ~~~ 281 (289)
+.|
T Consensus 245 n~G 247 (380)
T KOG2908|consen 245 NSG 247 (380)
T ss_pred ccC
Confidence 443
No 325
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=85.65 E-value=10 Score=34.52 Aligned_cols=139 Identities=13% Similarity=0.012 Sum_probs=86.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHH----
Q 022992 40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARY---- 114 (289)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~---- 114 (289)
+.++.+.+..-.+......+.....+...+...+..-..++..+.-. .++.|.+....|.......|-...-+++
T Consensus 320 ae~~~~g~~a~l~lplaL~~~~~~sey~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvf 399 (482)
T KOG4322|consen 320 AEARESGDTACLNLPLALMFEFKRSEYSLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVF 399 (482)
T ss_pred HHHHhcCCCchhhHHHHHHHHHHHHHhccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEE
Confidence 33444444445555555555555555554455555445555555433 7889999999999888887766554443
Q ss_pred ---HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHH---HHHHHHHHH
Q 022992 115 ---YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHK---SIEIYEEIA 179 (289)
Q Consensus 115 ---l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~a~ 179 (289)
+...+.-+.. .+.+.++++.++|-+++.+.+-...+.++..-.+..|-..|+.++ +...|++..
T Consensus 400 anC~lA~a~s~~~-e~ld~~~~~L~~A~~~f~kL~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~ 469 (482)
T KOG4322|consen 400 ANCTLAFALSCAN-ESLDGFPRYLDLAQSIFYKLGCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAW 469 (482)
T ss_pred Eeeeecchhhhhh-hhHHhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHH
Confidence 3333333322 678888888888888888877666666666667777777776543 444555543
No 326
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=85.40 E-value=9.1 Score=37.91 Aligned_cols=25 Identities=16% Similarity=0.305 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992 155 KQKVAQYAAELEQYHKSIEIYEEIA 179 (289)
Q Consensus 155 ~~~l~~~~~~~g~~~~A~~~~~~a~ 179 (289)
+.-+-.+|.++|++++|..+|+++.
T Consensus 80 Lq~l~~~y~d~~~~d~~~~~Ye~~~ 104 (932)
T KOG2053|consen 80 LQFLQNVYRDLGKLDEAVHLYERAN 104 (932)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3444445555555555555555554
No 327
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=85.01 E-value=2.8 Score=28.32 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=19.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992 115 YKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (289)
Q Consensus 115 l~~la~~~~~~g~~~~A~~~y~~A~~~~~~ 144 (289)
+...|.-....|+|++|..+|..+++.+..
T Consensus 9 l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~ 38 (75)
T cd02677 9 LIRLALEKEEEGDYEAAFEFYRAGVDLLLK 38 (75)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 333444444457788888888888777653
No 328
>PRK10941 hypothetical protein; Provisional
Probab=84.90 E-value=15 Score=31.50 Aligned_cols=87 Identities=9% Similarity=0.076 Sum_probs=64.1
Q ss_pred ccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC
Q 022992 147 VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTF 226 (289)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~ 226 (289)
+.......+.++=.++...++++.|+.+.+..+...++++ + -..-.|++|...|-+..|..-++.|++..|.
T Consensus 176 ~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp---~----e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~- 247 (269)
T PRK10941 176 NIEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDP---Y----EIRDRGLIYAQLDCEHVALSDLSYFVEQCPE- 247 (269)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCH---H----HHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC-
Confidence 3344556778888899999999999999999985544332 1 2234688999999999999999999987765
Q ss_pred CCchHHHHHHHHHHHHc
Q 022992 227 SGTREYRLLSDIAASMD 243 (289)
Q Consensus 227 ~~~~e~~~l~~l~~a~~ 243 (289)
.+....+...+..+.
T Consensus 248 --dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 248 --DPISEMIRAQIHSIE 262 (269)
T ss_pred --chhHHHHHHHHHHHh
Confidence 444555666665553
No 329
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=84.70 E-value=1.9 Score=43.46 Aligned_cols=101 Identities=17% Similarity=0.102 Sum_probs=65.5
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 022992 43 FKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAEL 121 (289)
Q Consensus 43 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~ 121 (289)
|...+.|+.|+..|.+..+-+.. . .+--.+..++|...... .-..--+-+.+|+.-|....+..++.--+..-|.+
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (932)
T PRK13184 485 FLAEKLYDQALIFYRRIRESFPG--R-KEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKALV 561 (932)
T ss_pred HHhhHHHHHHHHHHHHHhhcCCC--c-ccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHHH
Confidence 44444555555555555555431 0 11112444555544322 11111177888888888888878888888888999
Q ss_pred HHhcCCHHHHHHHHHHHHHHHhccC
Q 022992 122 YESEHNIEQTIVFFEKAADMFQNEE 146 (289)
Q Consensus 122 ~~~~g~~~~A~~~y~~A~~~~~~~~ 146 (289)
|+.+|++++-+++|.-|+.-|+...
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (932)
T PRK13184 562 YQRLGEYNEEIKSLLLALKRYSQHP 586 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999998887643
No 330
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=84.60 E-value=26 Score=30.42 Aligned_cols=131 Identities=9% Similarity=0.023 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC
Q 022992 49 WDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHN 127 (289)
Q Consensus 49 ~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~ 127 (289)
.++-++-+.+.++-.+..+-....+.++.++|..|-+. |.+.+.+++.+..+-....|-.-..--+...+|.+|..
T Consensus 91 neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d--- 167 (412)
T COG5187 91 NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGD--- 167 (412)
T ss_pred hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhcc---
Confidence 34555555555555555444566788999999999887 99999999998887776667655555566677777754
Q ss_pred HHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992 128 IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS 182 (289)
Q Consensus 128 ~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 182 (289)
-.-.-+..+.+=.++++.|+-...+..-.--|.......+|.+|..++.+.+...
T Consensus 168 ~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF 222 (412)
T COG5187 168 RKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTF 222 (412)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 3444456666667777777766666666666777777789999999998887433
No 331
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=84.59 E-value=8.4 Score=25.96 Aligned_cols=31 Identities=10% Similarity=0.054 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (289)
Q Consensus 114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~ 144 (289)
.+..-|.-....|++++|+.+|.+|++.+..
T Consensus 8 ~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~ 38 (75)
T cd02684 8 ALVVQAVKKDQRGDAAAALSLYCSALQYFVP 38 (75)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3444445556669999999999999998764
No 332
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=84.26 E-value=3.6 Score=27.60 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992 113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (289)
Q Consensus 113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~ 144 (289)
..+..-|.-....|++++|+.+|..|++.+..
T Consensus 7 ~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~ 38 (75)
T cd02656 7 KELIKQAVKEDEDGNYEEALELYKEALDYLLQ 38 (75)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 33445556666668888888888888887653
No 333
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=84.14 E-value=5.8 Score=33.74 Aligned_cols=94 Identities=12% Similarity=0.105 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHccC----CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCcc
Q 022992 73 AQAYVDAAHCYKKT----SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT 148 (289)
Q Consensus 73 a~~~~~~a~~~~~~----~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~ 148 (289)
+.+++.+--++... -+..|.++..+|+-.....|+....+-|-..-+..+....+|+.|.-||.+|..++....-+
T Consensus 36 a~~lEk~~~~Fs~~~s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d~L~ 115 (368)
T COG5091 36 AACLEKLYFGFSDWHSDATMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDDTLP 115 (368)
T ss_pred hhhHHHHHhhhhhhhcccChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcccch
Confidence 34445444444322 67899999999999999999999899899999999999999999999999999999887777
Q ss_pred chHHHHHHHHHHHHHHhc
Q 022992 149 TSANQCKQKVAQYAAELE 166 (289)
Q Consensus 149 ~~~~~~~~~l~~~~~~~g 166 (289)
.+..+.-..|-...-+++
T Consensus 116 ~We~rLet~L~~~~kkQ~ 133 (368)
T COG5091 116 LWEDRLETKLNKKNKKQK 133 (368)
T ss_pred HHHHHHHHHHhHhhHhhc
Confidence 666555555555555443
No 334
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=84.03 E-value=39 Score=31.96 Aligned_cols=49 Identities=14% Similarity=0.288 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992 126 HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180 (289)
Q Consensus 126 g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 180 (289)
+++.-|.+.|+-.+..|...+ .......+.+..+++=..|..+|++++.
T Consensus 415 kD~~~AfrIFeLGLkkf~d~p------~yv~~YldfL~~lNdd~N~R~LFEr~l~ 463 (656)
T KOG1914|consen 415 KDKETAFRIFELGLKKFGDSP------EYVLKYLDFLSHLNDDNNARALFERVLT 463 (656)
T ss_pred CChhHHHHHHHHHHHhcCCCh------HHHHHHHHHHHHhCcchhHHHHHHHHHh
Confidence 667777777776666655432 3345556666677777777777777763
No 335
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=83.84 E-value=28 Score=30.22 Aligned_cols=90 Identities=14% Similarity=0.187 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHH
Q 022992 90 EAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYH 169 (289)
Q Consensus 90 ~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 169 (289)
+-++-+.++++-....+-....+.++.++|..|.+.++.+.+.++..+.++-.-..|......-+...+|-+|..+.=.+
T Consensus 93 eki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~ 172 (412)
T COG5187 93 EKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVE 172 (412)
T ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHH
Confidence 33444444444333333355678899999999999999999999999998877777766666677788998888777667
Q ss_pred HHHHHHHHHH
Q 022992 170 KSIEIYEEIA 179 (289)
Q Consensus 170 ~A~~~~~~a~ 179 (289)
+.++....++
T Consensus 173 e~lE~~~~~i 182 (412)
T COG5187 173 ESLEVADDII 182 (412)
T ss_pred HHHHHHHHHH
Confidence 7666655554
No 336
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=83.80 E-value=8 Score=35.16 Aligned_cols=98 Identities=14% Similarity=0.164 Sum_probs=69.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHHhc-----------CCHH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 022992 75 AYVDAAHCYKKTSSNEAISCLEQAVNMFCDI-----------GRLS-MAARYYKEIAELYESEHNIEQTIVFFEKAADMF 142 (289)
Q Consensus 75 ~~~~~a~~~~~~~~~~A~~~~~~A~~~~~~~-----------g~~~-~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~ 142 (289)
++..+..+|++..|..|+--|..|+++..+. |+.. -+..+-.+|..||..+++++-|+.+-.+++.+-
T Consensus 179 AL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ln 258 (569)
T PF15015_consen 179 ALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLN 258 (569)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcC
Confidence 5566777777778888888888888776542 2222 234456789999999999999999999988775
Q ss_pred hccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 022992 143 QNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI 178 (289)
Q Consensus 143 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 178 (289)
+.. ...+..-+.++..+.+|.+|.+.+--+
T Consensus 259 P~~------frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 259 PSY------FRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred cch------hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 123445566788888888888765544
No 337
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=83.35 E-value=12 Score=25.55 Aligned_cols=68 Identities=10% Similarity=0.098 Sum_probs=50.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCcc
Q 022992 78 DAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT 148 (289)
Q Consensus 78 ~~a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~ 148 (289)
+.-.+|...+.++|+...+++++-..+.. +.=.++.-+..+|.+.|+|.+.+.+-.+=+++.++.+++
T Consensus 12 ~GlkLY~~~~~~~Al~~W~~aL~k~~~~~---~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~ 79 (80)
T PF10579_consen 12 KGLKLYHQNETQQALQKWRKALEKITDRE---DRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELEDP 79 (80)
T ss_pred HHHHHhccchHHHHHHHHHHHHhhcCChH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 33445544477889999999988766533 444567777888899999999999998888887766554
No 338
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=83.21 E-value=48 Score=32.45 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 022992 34 DLFDKAANSFKLAKSWDKAGATYVKL 59 (289)
Q Consensus 34 ~~~~~A~~~~~~~g~~~~A~~~~~~a 59 (289)
+.++..|..|.....|++|.++|.++
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445566666666777777777655
No 339
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=82.78 E-value=4 Score=41.27 Aligned_cols=91 Identities=13% Similarity=-0.016 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHH
Q 022992 90 EAISCLEQAVNMFCDIGRL----SMAARYYKEIAELYESE----HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQY 161 (289)
Q Consensus 90 ~A~~~~~~A~~~~~~~g~~----~~~a~~l~~la~~~~~~----g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~ 161 (289)
-|...|.+|+..|++.+.. ...-.+...+|..+.+. |+. +.|.+|+.-|+.......++--+..-+-+
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (932)
T PRK13184 486 LAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDP----RDFTQALSEFSYLHGGVGAPLEYLGKALV 561 (932)
T ss_pred HhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCCh----HHHHHHHHHHHHhcCCCCCchHHHhHHHH
Confidence 4566677777777665432 12233455556555432 444 68889998888887777777667777789
Q ss_pred HHHhcCHHHHHHHHHHHHHHHhh
Q 022992 162 AAELEQYHKSIEIYEEIARQSLN 184 (289)
Q Consensus 162 ~~~~g~~~~A~~~~~~a~~~~~~ 184 (289)
|..+|+|++=+++|.-++.+..+
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~ 584 (932)
T PRK13184 562 YQRLGEYNEEIKSLLLALKRYSQ 584 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCC
Confidence 99999999999999888755433
No 340
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=82.70 E-value=13 Score=27.74 Aligned_cols=66 Identities=14% Similarity=0.190 Sum_probs=47.0
Q ss_pred HHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCH---------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 022992 77 VDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL---------SMAARYYKEIAELYESEHNIEQTIVFFEKAADMF 142 (289)
Q Consensus 77 ~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~---------~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~ 142 (289)
..+|....+. ++-.++-+|++|+.+..+.+.. ..-.-...|+|..+...|+.+-.++|++-|.+..
T Consensus 5 tllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~V 80 (140)
T PF10952_consen 5 TLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKV 80 (140)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 3445544444 7888888888888887766311 1123345689999999999999999999887653
No 341
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=82.51 E-value=34 Score=35.29 Aligned_cols=36 Identities=19% Similarity=0.175 Sum_probs=18.5
Q ss_pred HhhHHHHHHHHHHhhccCCCCC-----CCHHHHHHHHHHHH
Q 022992 5 IARAEEFEKKAEKKLNGWGLFG-----SKYEDAADLFDKAA 40 (289)
Q Consensus 5 ~~~a~~~~~~A~~~~k~~~~~~-----~~~~~A~~~~~~A~ 40 (289)
++|=..++.+=+++-..+..|+ ++|++|+.....++
T Consensus 867 PkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~ 907 (1265)
T KOG1920|consen 867 PKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECG 907 (1265)
T ss_pred hHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcC
Confidence 3444455555554333233454 66677666555554
No 342
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=82.48 E-value=5.1 Score=27.20 Aligned_cols=35 Identities=11% Similarity=0.167 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 022992 30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLK 65 (289)
Q Consensus 30 ~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~ 65 (289)
..|+++..+| .-....|++++|+.+|.++++.+..
T Consensus 4 ~~a~~l~~~A-ve~D~~g~y~eAl~~Y~~aie~l~~ 38 (77)
T cd02683 4 LAAKEVLKRA-VELDQEGRFQEALVCYQEGIDLLMQ 38 (77)
T ss_pred HHHHHHHHHH-HHHHHhccHHHHHHHHHHHHHHHHH
Confidence 4566655555 4445678888888888888887753
No 343
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=82.42 E-value=13 Score=28.34 Aligned_cols=68 Identities=15% Similarity=0.207 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992 111 AARYYKEIAELYESE---HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS 182 (289)
Q Consensus 111 ~a~~l~~la~~~~~~---g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 182 (289)
...+..+++.++... .+..+.|.+++..+. ...+...-+|+.-|+.-+.++|+|+.|+++....+...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~----~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK----SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh----hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 445667777777654 456777888877665 33444556789999999999999999999998887544
No 344
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=82.21 E-value=35 Score=30.11 Aligned_cols=110 Identities=13% Similarity=0.076 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 022992 34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAAR 113 (289)
Q Consensus 34 ~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~ 113 (289)
+....-+..|...||-+.|.+.+.+..+-...+|..-...-+..++|..|.. .+-.-+..++|-.++.+.||++.-.+
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D--~~lV~~~iekak~liE~GgDWeRrNR 182 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLD--HDLVTESIEKAKSLIEEGGDWERRNR 182 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhcc--HHHHHHHHHHHHHHHHhCCChhhhhh
Confidence 3334456778889999999999999988888888877777788888888874 44455667788889999999999888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 022992 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNE 145 (289)
Q Consensus 114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~ 145 (289)
.-.--|.......++.+|..+|..++.-|...
T Consensus 183 lKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~ 214 (393)
T KOG0687|consen 183 LKVYQGLYCMSVRNFKEAADLFLDSVSTFTSY 214 (393)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHcccccce
Confidence 88877887777788888888888887766543
No 345
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=81.57 E-value=9.4 Score=30.75 Aligned_cols=89 Identities=15% Similarity=0.124 Sum_probs=58.1
Q ss_pred CCHHHHH-HHHHHHHHHHhccCccchHHHHHHHHHHHHH-----HhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHH
Q 022992 126 HNIEQTI-VFFEKAADMFQNEEVTTSANQCKQKVAQYAA-----ELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNA 199 (289)
Q Consensus 126 g~~~~A~-~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 199 (289)
|+|=++| .-|+.|+.+|..+-+..+-+....++|..++ ..++...|++.|..+-.. +.......+
T Consensus 41 gdYlEgi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~---------n~~~aC~~~ 111 (248)
T KOG4014|consen 41 GDYLEGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA---------NIPQACRYL 111 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc---------CCHHHHhhh
Confidence 5555555 4678888887766555444556677776665 235888999999887521 122334567
Q ss_pred HHHHHc-------cCCHHHHHHHHHHHhhcC
Q 022992 200 GICQLC-------KGDVVAITNALERYQDMD 223 (289)
Q Consensus 200 ~~~~l~-------~gd~~~A~~~~~~~~~~~ 223 (289)
|++++. ..|.+.|++.+.+++++.
T Consensus 112 gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~ 142 (248)
T KOG4014|consen 112 GLLHWNGEKDRKADPDSEKAERYMTRACDLE 142 (248)
T ss_pred hhhhccCcCCccCCCCcHHHHHHHHHhccCC
Confidence 777653 235888999998887653
No 346
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=81.42 E-value=6.4 Score=26.57 Aligned_cols=37 Identities=16% Similarity=0.031 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 022992 28 KYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLK 65 (289)
Q Consensus 28 ~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~ 65 (289)
...+|+.+..+| .-....|++++|..+|..+++.+..
T Consensus 2 ~l~~Ai~lv~~A-v~~D~~g~y~eA~~lY~~ale~~~~ 38 (75)
T cd02684 2 SLEKAIALVVQA-VKKDQRGDAAAALSLYCSALQYFVP 38 (75)
T ss_pred cHHHHHHHHHHH-HHHHHhccHHHHHHHHHHHHHHHHH
Confidence 345666666666 3345667788888888888777653
No 347
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=81.16 E-value=2.1 Score=35.61 Aligned_cols=50 Identities=12% Similarity=0.274 Sum_probs=33.1
Q ss_pred hcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992 124 SEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (289)
Q Consensus 124 ~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 179 (289)
+.++.+.|.+.|.+|+++.++. ...+..+|....+.|+++.|.+.|++++
T Consensus 7 ~~~D~~aaaely~qal~lap~w------~~gwfR~g~~~ekag~~daAa~a~~~~L 56 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEW------AAGWFRLGEYTEKAGEFDAAAAAYEEVL 56 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchh------hhhhhhcchhhhhcccHHHHHHHHHHHH
Confidence 3467777777777777765542 2356667777777777777777777765
No 348
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=81.02 E-value=7.5 Score=25.50 Aligned_cols=34 Identities=21% Similarity=0.314 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 022992 30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHL 64 (289)
Q Consensus 30 ~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~ 64 (289)
+.|..+..+|... ...|++++|+++|.++++.+.
T Consensus 3 ~~A~~~~~~Av~~-D~~g~~~~A~~~Y~~ai~~l~ 36 (69)
T PF04212_consen 3 DKAIELIKKAVEA-DEAGNYEEALELYKEAIEYLM 36 (69)
T ss_dssp HHHHHHHHHHHHH-HHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHH
Confidence 4455555554444 457788888888888877765
No 349
>PF12854 PPR_1: PPR repeat
Probab=80.79 E-value=3.5 Score=22.88 Aligned_cols=25 Identities=8% Similarity=0.189 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH
Q 022992 153 QCKQKVAQYAAELEQYHKSIEIYEE 177 (289)
Q Consensus 153 ~~~~~l~~~~~~~g~~~~A~~~~~~ 177 (289)
.+++.+...+.+.|+.++|.+++++
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 3678888899999999999998875
No 350
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=80.71 E-value=37 Score=29.46 Aligned_cols=224 Identities=11% Similarity=0.090 Sum_probs=124.2
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 022992 46 AKSWDKAGATYVKLANCHLKLESKHEA-AQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES 124 (289)
Q Consensus 46 ~g~~~~A~~~~~~a~~~~~~~~~~~~a-a~~~~~~a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~ 124 (289)
...++.-+.....++++..+-+...-. .-....+...|....+.+|+....-.+.-+++..+.......+.-=..+|-.
T Consensus 98 ~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~ 177 (421)
T COG5159 98 SDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHE 177 (421)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHH
Confidence 355677777888888777654433221 1122222333444488999998888888888877765555555544555555
Q ss_pred cCCHHHHHHHHHHHHHHHhcc-CccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHH-----
Q 022992 125 EHNIEQTIVFFEKAADMFQNE-EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLN----- 198 (289)
Q Consensus 125 ~g~~~~A~~~y~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~----- 198 (289)
..+..++-..+.-|-...... -.+...++.-..=|.+++.-.+|..|..+|-++..-... . ..... +...
T Consensus 178 irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~--l-~~d~k-Ac~sLkYml 253 (421)
T COG5159 178 IRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTL--L-KMDVK-ACVSLKYML 253 (421)
T ss_pred HHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcccc--c-cchHH-HHHHHHHHH
Confidence 556666655555554433222 123334444455566778888999999999888632110 0 00111 1111
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccCHHHHHHHHHhccccCCCchhHHHHHHHHHHh
Q 022992 199 AGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEK 277 (289)
Q Consensus 199 ~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~ 277 (289)
+..+.+ ...++-...++ .--....+ ..+....+..+.+++.+.++..|..+++.|..--.-||..+.-+.-+-+.
T Consensus 254 LSkIMl--N~~~evk~vl~-~K~t~~~y-~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~~iRsHl~~LYD~ 328 (421)
T COG5159 254 LSKIML--NRREEVKAVLR-NKNTLKHY-DDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDSFIRSHLQYLYDV 328 (421)
T ss_pred HHHHHH--hhHHHHHHHHc-cchhHhhh-hhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCHHHHHHHHHHHHH
Confidence 111111 11111111111 00011111 23445667778889999999999999999987766777776555544333
No 351
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=80.41 E-value=41 Score=35.49 Aligned_cols=52 Identities=12% Similarity=0.013 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 022992 71 EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELY 122 (289)
Q Consensus 71 ~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~ 122 (289)
..++...-+|+.|... .+.+|+..|..|+++.+..+|+.-.|.++..++.+.
T Consensus 240 ~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~ 292 (1185)
T PF08626_consen 240 CKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCL 292 (1185)
T ss_pred hhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHH
Confidence 4567777788888776 999999999999999999999988888888776554
No 352
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.91 E-value=29 Score=27.79 Aligned_cols=100 Identities=12% Similarity=0.142 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchh
Q 022992 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK 193 (289)
Q Consensus 114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 193 (289)
+....|.+..+.|+...|+..|..+..--+.. .........+.+.+++..|-|+.-....+-.. .+.+..++...
T Consensus 96 A~mr~at~~a~kgdta~AV~aFdeia~dt~~P--~~~rd~ARlraa~lLvD~gsy~dV~srvepLa---~d~n~mR~sAr 170 (221)
T COG4649 96 ARMRAATLLAQKGDTAAAVAAFDEIAADTSIP--QIGRDLARLRAAYLLVDNGSYDDVSSRVEPLA---GDGNPMRHSAR 170 (221)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHhccCCCc--chhhHHHHHHHHHHHhccccHHHHHHHhhhcc---CCCChhHHHHH
Confidence 34566777777799999999998776432211 11123345677788889999987655444331 12222333333
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022992 194 GHLLNAGICQLCKGDVVAITNALERYQD 221 (289)
Q Consensus 194 ~~~~~~~~~~l~~gd~~~A~~~~~~~~~ 221 (289)
+ .+|+..+..||+..|...|.....
T Consensus 171 E---ALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 171 E---ALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred H---HHhHHHHhccchHHHHHHHHHHHc
Confidence 2 357888899999999999987543
No 353
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.16 E-value=82 Score=32.47 Aligned_cols=99 Identities=13% Similarity=0.147 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH---------HHhhccccccchh-----------hHHHHHHHHHHccCCHHHHH
Q 022992 154 CKQKVAQYAAELEQYHKSIEIYEEIAR---------QSLNNNLLKYGVK-----------GHLLNAGICQLCKGDVVAIT 213 (289)
Q Consensus 154 ~~~~l~~~~~~~g~~~~A~~~~~~a~~---------~~~~~~~~~~~~~-----------~~~~~~~~~~l~~gd~~~A~ 213 (289)
.+.+++..++.+|+|+.|...-+++.. .+++.. .++.+ .-+-.+...|...|-+++-+
T Consensus 1222 N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~--EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElI 1299 (1666)
T KOG0985|consen 1222 NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKE--EFRLAQICGLNIIVHADELEELIEYYQDRGYFEELI 1299 (1666)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchh--hhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHH
Confidence 466788889999999999988877731 112111 00000 00001122233455555555
Q ss_pred HHHHHHhhcCCCCCCchHHHHHHHHHHHHcccCHHHHHHHHHhccc
Q 022992 214 NALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDS 259 (289)
Q Consensus 214 ~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d~~~~~~al~~~~~ 259 (289)
..++..+.+.+.+. -+...|+..+..=.++++.+-++-|-+
T Consensus 1300 sl~Ea~LGLERAHM-----gmfTELaiLYskykp~km~EHl~LFws 1340 (1666)
T KOG0985|consen 1300 SLLEAGLGLERAHM-----GMFTELAILYSKYKPEKMMEHLKLFWS 1340 (1666)
T ss_pred HHHHhhhchhHHHH-----HHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 55555554433332 344556666655557777777776543
No 354
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=79.13 E-value=17 Score=24.56 Aligned_cols=36 Identities=17% Similarity=0.076 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 022992 29 YEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLK 65 (289)
Q Consensus 29 ~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~ 65 (289)
.+.|+.+..+|.. -...|++++|+++|..|++.+..
T Consensus 3 l~kai~Lv~~A~~-eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 3 LERAHFLVTQAFD-EDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHHH-hhHhhhHHHHHHHHHHHHHHHHH
Confidence 4556666666533 24566777777777777777654
No 355
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=78.53 E-value=62 Score=30.70 Aligned_cols=183 Identities=14% Similarity=0.127 Sum_probs=99.0
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHHHccC-C-------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Q 022992 55 TYVKLANCHLKLE-SKHEAAQAYVDAAHCYKKT-S-------SNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE 125 (289)
Q Consensus 55 ~~~~a~~~~~~~~-~~~~aa~~~~~~a~~~~~~-~-------~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~ 125 (289)
.|++++.+..-.- -+...+..+..++.++... + .+++..+|+++++...... .-.+..++..-+..
T Consensus 267 ayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~-----~~Ly~~~a~~eE~~ 341 (656)
T KOG1914|consen 267 AYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKEN-----KLLYFALADYEESR 341 (656)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhHHHh
Confidence 4555555543221 2456677777778877544 3 4567777777766654331 12223333333322
Q ss_pred C---CHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHH
Q 022992 126 H---NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGIC 202 (289)
Q Consensus 126 g---~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 202 (289)
- .++...++|++.+.+....-. -++.++-..-.+..-...|..+|.++... +...| .-+...+.+-
T Consensus 342 ~~~n~~~~~~~~~~~ll~~~~~~~t-----Lv~~~~mn~irR~eGlkaaR~iF~kaR~~----~r~~h--hVfVa~A~mE 410 (656)
T KOG1914|consen 342 YDDNKEKKVHEIYNKLLKIEDIDLT-----LVYCQYMNFIRRAEGLKAARKIFKKARED----KRTRH--HVFVAAALME 410 (656)
T ss_pred cccchhhhhHHHHHHHHhhhccCCc-----eehhHHHHHHHHhhhHHHHHHHHHHHhhc----cCCcc--hhhHHHHHHH
Confidence 2 267777889988887665432 23445555555566667777788777522 11111 1122233455
Q ss_pred HHccCCHHHHHHHHHHHhhcCCCCCCchHHHH--HHHHHHHHcccC-HHHHHHHHHh
Q 022992 203 QLCKGDVVAITNALERYQDMDPTFSGTREYRL--LSDIAASMDEED-IAKFTDVVKE 256 (289)
Q Consensus 203 ~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~--l~~l~~a~~~~d-~~~~~~al~~ 256 (289)
|.+.+|..-|-+.|+-.+. .|++++++.. +.-|+..-...+ ...|++++.+
T Consensus 411 y~cskD~~~AfrIFeLGLk---kf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 411 YYCSKDKETAFRIFELGLK---KFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHhcCChhHHHHHHHHHHH---hcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 7788888888888876654 4566666422 222222111111 3566666665
No 356
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=78.18 E-value=5.5 Score=34.72 Aligned_cols=61 Identities=15% Similarity=0.192 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992 115 YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS 182 (289)
Q Consensus 115 l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 182 (289)
+...+..+.. |+.++|...|+-|+.+.+.. .+++...|.+...-++.-+|-.+|-+++...
T Consensus 120 l~~A~~~~~~-Gk~ekA~~lfeHAlalaP~~------p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtis 180 (472)
T KOG3824|consen 120 LKAAGRSRKD-GKLEKAMTLFEHALALAPTN------PQILIEMGQFREMHNEIVEADQCYVKALTIS 180 (472)
T ss_pred HHHHHHHHhc-cchHHHHHHHHHHHhcCCCC------HHHHHHHhHHHHhhhhhHhhhhhhheeeeeC
Confidence 3333444443 99999999999999998754 3688999999988899999999998886443
No 357
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=78.12 E-value=45 Score=30.57 Aligned_cols=114 Identities=13% Similarity=0.049 Sum_probs=64.8
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc---CC--------H-HHHHHHHHHHHHHHccC-CHHHHHH
Q 022992 27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKL---ES--------K-HEAAQAYVDAAHCYKKT-SSNEAIS 93 (289)
Q Consensus 27 ~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~---~~--------~-~~aa~~~~~~a~~~~~~-~~~~A~~ 93 (289)
|..|+=.+..-+-+..+..++.|..|+--|.-++++..+- +. - .-+...-..+..||... .++-|+.
T Consensus 170 PqiDkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALn 249 (569)
T PF15015_consen 170 PQIDKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALN 249 (569)
T ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHH
Confidence 6666544433333344445567777777777777765421 11 1 12334557888999877 8888988
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q 022992 94 CLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE 146 (289)
Q Consensus 94 ~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~ 146 (289)
+-.+.+.+.+..-. -...-|.++..+.+|.+|.+.+.-|.-+|.-.|
T Consensus 250 h~hrsI~lnP~~fr------nHLrqAavfR~LeRy~eAarSamia~ymywl~g 296 (569)
T PF15015_consen 250 HSHRSINLNPSYFR------NHLRQAAVFRRLERYSEAARSAMIADYMYWLSG 296 (569)
T ss_pred HHhhhhhcCcchhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88888765443211 122223444444566666666655555555443
No 358
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=77.78 E-value=4.5 Score=24.19 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=22.4
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHH
Q 022992 156 QKVAQYAAELEQYHKSIEIYEEIA 179 (289)
Q Consensus 156 ~~l~~~~~~~g~~~~A~~~~~~a~ 179 (289)
..++..|..+|+++.|.+.+++++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHH
Confidence 578999999999999999999997
No 359
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=77.48 E-value=34 Score=31.75 Aligned_cols=79 Identities=19% Similarity=0.168 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchh
Q 022992 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK 193 (289)
Q Consensus 114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 193 (289)
.|..+|.....+|+++-|.++|+++-+. ..|.-+|.-.|+-+.=.++...+.. .
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~k~~d~--------------~~L~lLy~~~g~~~~L~kl~~~a~~------------~ 402 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQKAKDF--------------SGLLLLYSSTGDREKLSKLAKIAEE------------R 402 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHCT-H--------------HHHHHHHHHCT-HHHHHHHHHHHHH------------T
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcCc--------------cccHHHHHHhCCHHHHHHHHHHHHH------------c
Confidence 8999999999999999999999887543 4456667777775443333332221 0
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHH
Q 022992 194 GHLLNAGICQLCKGDVVAITNALER 218 (289)
Q Consensus 194 ~~~~~~~~~~l~~gd~~~A~~~~~~ 218 (289)
+-+..+..|++..||.++-.+.+.+
T Consensus 403 ~~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 403 GDINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp T-HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1122234566777887766555543
No 360
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=77.43 E-value=9.6 Score=25.55 Aligned_cols=36 Identities=25% Similarity=0.247 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 022992 29 YEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLK 65 (289)
Q Consensus 29 ~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~ 65 (289)
+++|..+..+| .-+...|++++|+.+|.++++.+..
T Consensus 5 ~~~A~~li~~A-v~~d~~g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 5 LSKAKELISKA-LKADEAGDYEEALELYKKAIEYLLE 40 (77)
T ss_pred HHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 44555555544 4445567777787777777777653
No 361
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=77.19 E-value=3.9 Score=37.51 Aligned_cols=64 Identities=13% Similarity=0.172 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992 157 KVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS 227 (289)
Q Consensus 157 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~ 227 (289)
+-+.-...-+.|+.|+..|.+++... . +...++.+-.+.|+..+++..|..-+.++.+++|.+.
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ld--p-----nca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~ 72 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELD--P-----NCAIYFANRALAHLKVESFGGALHDALKAIELDPTYI 72 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcC--C-----cceeeechhhhhheeechhhhHHHHHHhhhhcCchhh
Confidence 33445556678888888888887432 1 1122333444677778888888877777777776653
No 362
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=77.09 E-value=10 Score=25.47 Aligned_cols=35 Identities=20% Similarity=0.213 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 022992 30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLK 65 (289)
Q Consensus 30 ~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~ 65 (289)
+.|+.++.+| .-....|++++|+.+|.++++.+..
T Consensus 4 ~~A~~l~~~A-v~~D~~g~y~eA~~~Y~~aie~l~~ 38 (75)
T cd02678 4 QKAIELVKKA-IEEDNAGNYEEALRLYQHALEYFMH 38 (75)
T ss_pred HHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4555555555 3345667777777777777777653
No 363
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=76.60 E-value=5.2 Score=21.90 Aligned_cols=14 Identities=29% Similarity=0.802 Sum_probs=6.8
Q ss_pred CHHHHHHHHHHHHH
Q 022992 127 NIEQTIVFFEKAAD 140 (289)
Q Consensus 127 ~~~~A~~~y~~A~~ 140 (289)
++++|+.+|++|.+
T Consensus 20 d~~~A~~~~~~Aa~ 33 (36)
T smart00671 20 DLEKALEYYKKAAE 33 (36)
T ss_pred CHHHHHHHHHHHHH
Confidence 44555555554443
No 364
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=76.60 E-value=39 Score=27.36 Aligned_cols=80 Identities=11% Similarity=0.086 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc--
Q 022992 54 ATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT------SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE-- 125 (289)
Q Consensus 54 ~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~------~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~-- 125 (289)
.-|++|..++...-+..+-+.+....|..+... ++..|+++|..|++. +. ...-..+|.++..-
T Consensus 49 knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~----n~----~~aC~~~gLl~~~g~~ 120 (248)
T KOG4014|consen 49 KNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA----NI----PQACRYLGLLHWNGEK 120 (248)
T ss_pred HHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc----CC----HHHHhhhhhhhccCcC
Confidence 456777777776666666666777777776443 789999999999872 22 22445556655431
Q ss_pred ---CC--HHHHHHHHHHHHHH
Q 022992 126 ---HN--IEQTIVFFEKAADM 141 (289)
Q Consensus 126 ---g~--~~~A~~~y~~A~~~ 141 (289)
++ .++|.+++.+|.++
T Consensus 121 ~r~~dpd~~Ka~~y~traCdl 141 (248)
T KOG4014|consen 121 DRKADPDSEKAERYMTRACDL 141 (248)
T ss_pred CccCCCCcHHHHHHHHHhccC
Confidence 33 78999999999876
No 365
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=76.21 E-value=59 Score=29.24 Aligned_cols=106 Identities=11% Similarity=0.005 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchh
Q 022992 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK 193 (289)
Q Consensus 114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 193 (289)
++..-...+...|-+..|.++.+--+.+.+.. ++. -++..|-.+..+.++|+==+..++........+.. ....
T Consensus 105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~-DP~---g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~--~~lP 178 (360)
T PF04910_consen 105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDE-DPL---GVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWL--SLLP 178 (360)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC-Ccc---hhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhh--hhCc
Confidence 45555666677799999999999888887653 333 24556666667888998888888776532111000 0123
Q ss_pred hHHHHHHHHHHccCCH---------------HHHHHHHHHHhhcCCC
Q 022992 194 GHLLNAGICQLCKGDV---------------VAITNALERYQDMDPT 225 (289)
Q Consensus 194 ~~~~~~~~~~l~~gd~---------------~~A~~~~~~~~~~~~~ 225 (289)
+..+..+++++..++. +.|...+.++...+|.
T Consensus 179 n~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 179 NFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred cHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 4556777888777776 7888888887665543
No 366
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=75.99 E-value=62 Score=29.44 Aligned_cols=72 Identities=15% Similarity=0.074 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHHHHH-----------H---HHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccCCHHHHH
Q 022992 27 SKYEDAADLFDKAAN-----------S---FKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAI 92 (289)
Q Consensus 27 ~~~~~A~~~~~~A~~-----------~---~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~~~~~A~ 92 (289)
|+|+.|-+-|+.... + -+..|+.+-|..+-+++.+....+. -++. ..+...+..++++.|+
T Consensus 134 G~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~---WA~~--AtLe~r~~~gdWd~Al 208 (531)
T COG3898 134 GDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLP---WAAR--ATLEARCAAGDWDGAL 208 (531)
T ss_pred CchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCc---hHHH--HHHHHHHhcCChHHHH
Confidence 788888888887631 1 2346788888888787777655431 1111 1223334444666666
Q ss_pred HHHHHHHHHHH
Q 022992 93 SCLEQAVNMFC 103 (289)
Q Consensus 93 ~~~~~A~~~~~ 103 (289)
.......+...
T Consensus 209 kLvd~~~~~~v 219 (531)
T COG3898 209 KLVDAQRAAKV 219 (531)
T ss_pred HHHHHHHHHHh
Confidence 66655554433
No 367
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.65 E-value=19 Score=37.02 Aligned_cols=125 Identities=8% Similarity=-0.010 Sum_probs=72.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-------ccC----CHHHHHHHHHHHHHHHHhcCCH
Q 022992 40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCY-------KKT----SSNEAISCLEQAVNMFCDIGRL 108 (289)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~-------~~~----~~~~A~~~~~~A~~~~~~~g~~ 108 (289)
|.+|...|...+|+.||.+|..-.-+ ..++..+..-. .++ ...+|++||.+++.++...+-.
T Consensus 927 g~~yl~tge~~kAl~cF~~a~Sg~ge-------~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~ 999 (1480)
T KOG4521|consen 927 GIAYLGTGEPVKALNCFQSALSGFGE-------GNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHA 999 (1480)
T ss_pred heeeecCCchHHHHHHHHHHhhcccc-------HHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccH
Confidence 44566678888999999888765422 22333333221 111 2345788888888888877765
Q ss_pred HHHHHHHHHH-----------HHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHH
Q 022992 109 SMAARYYKEI-----------AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS 171 (289)
Q Consensus 109 ~~~a~~l~~l-----------a~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 171 (289)
+.+...-... +.++...=++.-=+.++.+|....-.+.+......|++++..++...|+++-=
T Consensus 1000 E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivLfecg~l~~L 1073 (1480)
T KOG4521|consen 1000 EEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVLFECGELEAL 1073 (1480)
T ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhccchHHH
Confidence 5443322211 11111111112223455666666566656666778999999999988886543
No 368
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=74.82 E-value=65 Score=29.10 Aligned_cols=191 Identities=10% Similarity=0.092 Sum_probs=105.8
Q ss_pred HHHhcCCHH-HHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Q 022992 62 CHLKLESKH-EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES---EHNIEQTIVFFE 136 (289)
Q Consensus 62 ~~~~~~~~~-~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~---~g~~~~A~~~y~ 136 (289)
+-.+++++. -.+....++-.+|+.. +++.-+...+..-.+ +... ...........|..+.. .|+.++|+..+.
T Consensus 129 i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~-p~~~-~~~~~~i~~~yafALnRrn~~gdre~Al~il~ 206 (374)
T PF13281_consen 129 IRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEAL-PTCD-VANQHNIKFQYAFALNRRNKPGDREKALQILL 206 (374)
T ss_pred HHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc-Cccc-hhcchHHHHHHHHHHhhcccCCCHHHHHHHHH
Confidence 334666553 2345666777788887 888888877765444 1000 11122244455555555 699999999999
Q ss_pred HHHHHHhccCccchHHHHHHHHHHHHHH---------hcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccC
Q 022992 137 KAADMFQNEEVTTSANQCKQKVAQYAAE---------LEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKG 207 (289)
Q Consensus 137 ~A~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 207 (289)
.++.--.. ..++++.-+|.+|-. ....++|+..|.++.... + ..|.-. |+..+....|
T Consensus 207 ~~l~~~~~-----~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~---~-~~Y~GI----N~AtLL~~~g 273 (374)
T PF13281_consen 207 PVLESDEN-----PDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE---P-DYYSGI----NAATLLMLAG 273 (374)
T ss_pred HHHhccCC-----CChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC---c-cccchH----HHHHHHHHcC
Confidence 88654222 234567777777632 246889999999986332 1 123222 2222222233
Q ss_pred C-H---HHHHHHH---HHHhhcCCCCCCchHHHHHHHHHHHH-cccCHHHHHHHHHhccccCCCchhHH
Q 022992 208 D-V---VAITNAL---ERYQDMDPTFSGTREYRLLSDIAASM-DEEDIAKFTDVVKEFDSMTPLDPWKT 268 (289)
Q Consensus 208 d-~---~~A~~~~---~~~~~~~~~~~~~~e~~~l~~l~~a~-~~~d~~~~~~al~~~~~~~~~d~~~~ 268 (289)
. . .+.++.. ...+.-.........+..+-.++.+. ..||.+....+.+.+-.+. ..+|+.
T Consensus 274 ~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~-~~~W~l 341 (374)
T PF13281_consen 274 HDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK-PPAWEL 341 (374)
T ss_pred CcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC-CcchhH
Confidence 2 1 1222222 11111111222334566666667665 4889988888888866665 345654
No 369
>PF02071 NSF: Aromatic-di-Alanine (AdAR) repeat ; InterPro: IPR000744 Regulated exocytosis of neurotransmitters and hormones, as well as intracellular traffic, requires fusion of two lipid bilayers. SNARE proteins are thought to form a protein bridge, the SNARE complex, between an incoming vesicle and the acceptor compartment. SNARE proteins contribute to the specificity of membrane fusion, implying that the mechanisms by which SNAREs are targeted to subcellular compartments are important for specific docking and fusion of vesicles. This mechanism involves a family of conserved proteins, members of which appear to function at all sites of constitutive and regulated secretion in eukaryotes []. Among them are 2 types of cytosolic protein, NSF (N-ethyl-maleimide-sensitive protein) and the SNAPs (alpha-, beta- and gamma-soluble NSF attachment proteins). The yeast vesicular fusion protein, sec17, a cytoplasmic peripheral membrane protein involved in vesicular transport between the endoplasmic reticulum and the golgi apparatus, shows a high degree of sequence similarity to the alpha-SNAP family. SNAP-25 and its non-neuronal homologue Syndet/SNAP-23 are synthesized as soluble proteins in the cytosol. Both SNAP-25 and Syndet/SNAP-23 are palmitoylated at cysteine residues clustered in a loop between two N- and C-terminal coils and palmitoylation is essential for membrane binding and plasma membrane targeting. The C-terminal and the N-terminal helices of SNAP-25, are each targeted to the plasma membrane by two distinct cysteine-rich domains and appear to regulate the availability of SNAP to form complexes with SNARE [].; GO: 0006886 intracellular protein transport
Probab=74.76 E-value=1.3 Score=18.73 Aligned_cols=6 Identities=50% Similarity=0.794 Sum_probs=2.3
Q ss_pred HHHHHH
Q 022992 35 LFDKAA 40 (289)
Q Consensus 35 ~~~~A~ 40 (289)
+|.+|+
T Consensus 4 ~y~~Aa 9 (12)
T PF02071_consen 4 CYEKAA 9 (12)
T ss_pred HHHHHH
Confidence 333333
No 370
>PF13041 PPR_2: PPR repeat family
Probab=73.95 E-value=5.6 Score=24.04 Aligned_cols=29 Identities=3% Similarity=0.296 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992 154 CKQKVAQYAAELEQYHKSIEIYEEIARQS 182 (289)
Q Consensus 154 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 182 (289)
+++.+-..+.+.|++++|.++|++.....
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 57788889999999999999999997543
No 371
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=73.60 E-value=36 Score=32.26 Aligned_cols=93 Identities=15% Similarity=0.175 Sum_probs=68.7
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHhcc-CccchHHHHHHHHHHHHH
Q 022992 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE--HNIEQTIVFFEKAADMFQNE-EVTTSANQCKQKVAQYAA 163 (289)
Q Consensus 87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~--g~~~~A~~~y~~A~~~~~~~-~~~~~~~~~~~~l~~~~~ 163 (289)
|-.+-...-++.+-+..+.|....-..+|.++|.+-+.. ..-+.++.+|.+|+...+.. ++.+. --|.-+|-.+.
T Consensus 252 d~~e~~~lqq~lLw~lyd~ghl~~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~Hv--YPYty~gg~~y 329 (618)
T PF05053_consen 252 DSVELAQLQQDLLWLLYDMGHLARYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHV--YPYTYLGGYYY 329 (618)
T ss_dssp EEHHHHHHHHHHHHHHHHTTTTTT-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--S--HHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhcCchhhCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCcc--ccceehhhHHH
Confidence 456777788888888889998888888999999987753 44567799999999886653 22222 34677888999
Q ss_pred HhcCHHHHHHHHHHHHHH
Q 022992 164 ELEQYHKSIEIYEEIARQ 181 (289)
Q Consensus 164 ~~g~~~~A~~~~~~a~~~ 181 (289)
+.++|.+|+.++.++...
T Consensus 330 R~~~~~eA~~~Wa~aa~V 347 (618)
T PF05053_consen 330 RHKRYREALRSWAEAADV 347 (618)
T ss_dssp HTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999888643
No 372
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=73.29 E-value=9.3 Score=21.68 Aligned_cols=24 Identities=13% Similarity=0.223 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHH
Q 022992 153 QCKQKVAQYAAELEQYHKSIEIYE 176 (289)
Q Consensus 153 ~~~~~l~~~~~~~g~~~~A~~~~~ 176 (289)
+.+..+|-.+...|+|++|+.+|+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHH
Confidence 346678889999999999999955
No 373
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.86 E-value=86 Score=29.61 Aligned_cols=78 Identities=6% Similarity=-0.020 Sum_probs=56.2
Q ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCC-HHHHHHHHHHHhhcCCCC
Q 022992 149 TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGD-VVAITNALERYQDMDPTF 226 (289)
Q Consensus 149 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd-~~~A~~~~~~~~~~~~~~ 226 (289)
....-...-+|.++..+|+-..|-.+|..............|-...+++.++..++.+|. ..+++..+.++.+-...+
T Consensus 446 Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 446 DDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 334444567889999999999999999988744332222244456678888888888877 889999999987644343
No 374
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=72.55 E-value=6.2 Score=20.61 Aligned_cols=26 Identities=12% Similarity=0.388 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992 154 CKQKVAQYAAELEQYHKSIEIYEEIA 179 (289)
Q Consensus 154 ~~~~l~~~~~~~g~~~~A~~~~~~a~ 179 (289)
+++.+-..+.+.|++++|.+.|++..
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHh
Confidence 46677888999999999999998874
No 375
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=72.14 E-value=16 Score=24.42 Aligned_cols=36 Identities=17% Similarity=0.213 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 022992 29 YEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLK 65 (289)
Q Consensus 29 ~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~ 65 (289)
+..|..+..+| .-....|++++|+.+|..+++.+..
T Consensus 3 ~~~a~~l~~~A-v~~D~~g~~~~Al~~Y~~a~e~l~~ 38 (75)
T cd02656 3 LQQAKELIKQA-VKEDEDGNYEEALELYKEALDYLLQ 38 (75)
T ss_pred HHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 34555544444 4445567888888888888777653
No 376
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.75 E-value=1.3e+02 Score=31.16 Aligned_cols=26 Identities=15% Similarity=0.097 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH
Q 022992 153 QCKQKVAQYAAELEQYHKSIEIYEEI 178 (289)
Q Consensus 153 ~~~~~l~~~~~~~g~~~~A~~~~~~a 178 (289)
.++.++|......|...+|++.|-++
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika 1130 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA 1130 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc
Confidence 56777787777788888888877665
No 377
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=71.70 E-value=23 Score=30.58 Aligned_cols=64 Identities=11% Similarity=0.137 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180 (289)
Q Consensus 111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 180 (289)
-..++..++..+...|+++.+++.+++-++..+-+. ..+..+-..|...|+...|+..|.+...
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E------~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDE------PAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccch------HHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 456888999999999999999999999988866543 4678888899999999999999998863
No 378
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=70.71 E-value=30 Score=23.38 Aligned_cols=29 Identities=14% Similarity=0.021 Sum_probs=20.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 022992 38 KAANSFKLAKSWDKAGATYVKLANCHLKL 66 (289)
Q Consensus 38 ~A~~~~~~~g~~~~A~~~~~~a~~~~~~~ 66 (289)
.-+.-+...|++.+|+.+|.+++++..+.
T Consensus 11 ~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~ 39 (75)
T cd02682 11 INAVKAEKEGNAEDAITNYKKAIEVLSQI 39 (75)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 33444567788888888888888777643
No 379
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=69.98 E-value=9.1 Score=20.38 Aligned_cols=26 Identities=8% Similarity=0.234 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992 154 CKQKVAQYAAELEQYHKSIEIYEEIA 179 (289)
Q Consensus 154 ~~~~l~~~~~~~g~~~~A~~~~~~a~ 179 (289)
+++.+-..+.+.|++++|.++|.+..
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 35677788999999999999999875
No 380
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=69.72 E-value=18 Score=21.56 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=21.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 022992 116 KEIAELYESEHNIEQTIVFFEKAAD 140 (289)
Q Consensus 116 ~~la~~~~~~g~~~~A~~~y~~A~~ 140 (289)
..+|..|...|+++.|.+.+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4688899999999999999999884
No 381
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=69.29 E-value=83 Score=27.99 Aligned_cols=26 Identities=19% Similarity=0.423 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992 154 CKQKVAQYAAELEQYHKSIEIYEEIA 179 (289)
Q Consensus 154 ~~~~l~~~~~~~g~~~~A~~~~~~a~ 179 (289)
+-..++.+-.++|+..+|++.+++..
T Consensus 277 IKRRLAMCARklGrlrEA~K~~RDL~ 302 (556)
T KOG3807|consen 277 IKRRLAMCARKLGRLREAVKIMRDLM 302 (556)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 45688888899999999999998875
No 382
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=68.96 E-value=20 Score=31.12 Aligned_cols=61 Identities=20% Similarity=0.217 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992 113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (289)
Q Consensus 113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 179 (289)
+.+...+..+...|.+.+|+.+.++++.+.+-.. +....+-.++..+|+--.+++.|++..
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e------~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSE------QDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhh------HHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3556667778888999999999999988766432 355667778888888888888887764
No 383
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=68.10 E-value=52 Score=25.17 Aligned_cols=82 Identities=12% Similarity=0.131 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992 151 ANQCKQKVAQYAAEL---EQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS 227 (289)
Q Consensus 151 ~~~~~~~l~~~~~~~---g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~ 227 (289)
..++.++++++++.. .+..+-+.++++.... . ++. ...++++-+.+.|.+.++++.+.+.++..++..|.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~--~-~~~--~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~-- 103 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS--A-HPE--RRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN-- 103 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh--c-Ccc--cchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC--
Confidence 346789999999865 4677888899988741 1 111 22334445566677789999999999998887655
Q ss_pred CchHHHHHHHHHH
Q 022992 228 GTREYRLLSDIAA 240 (289)
Q Consensus 228 ~~~e~~~l~~l~~ 240 (289)
++++..|...+.
T Consensus 104 -n~Qa~~Lk~~ie 115 (149)
T KOG3364|consen 104 -NRQALELKETIE 115 (149)
T ss_pred -cHHHHHHHHHHH
Confidence 555555655553
No 384
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=67.07 E-value=36 Score=22.99 Aligned_cols=21 Identities=14% Similarity=0.112 Sum_probs=12.5
Q ss_pred HHcCCHHHHHHHHHHHHHHHH
Q 022992 44 KLAKSWDKAGATYVKLANCHL 64 (289)
Q Consensus 44 ~~~g~~~~A~~~~~~a~~~~~ 64 (289)
...|++++|+.+|..+++.+.
T Consensus 17 D~~g~y~eA~~~Y~~aie~l~ 37 (76)
T cd02681 17 DQEGRYSEAVFYYKEAAQLLI 37 (76)
T ss_pred HHccCHHHHHHHHHHHHHHHH
Confidence 455666666666666666554
No 385
>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.
Probab=67.03 E-value=1.4e+02 Score=29.84 Aligned_cols=119 Identities=13% Similarity=0.008 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHccC---CHHHHHHHHHHHHHHHH
Q 022992 28 KYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHL-KLESKHEAAQAYVDAAHCYKKT---SSNEAISCLEQAVNMFC 103 (289)
Q Consensus 28 ~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~aa~~~~~~a~~~~~~---~~~~A~~~~~~A~~~~~ 103 (289)
..+.|..+|-++|.+-...+--+=|.++|.+|..+|+ ...+....-.++..+.....+. ..+.--....++.....
T Consensus 587 ~~~lalkL~Lq~A~~AD~~~~e~iaYEFf~QAf~iYEE~IsDSk~Q~~aL~~ii~tL~~~r~~~~Enyd~L~tk~t~yas 666 (762)
T PF03635_consen 587 SSELALKLYLQAAIVADQCGLEEIAYEFFSQAFTIYEEEISDSKAQFQALTLIIGTLQKTRSFSEENYDTLITKCTLYAS 666 (762)
T ss_dssp --HHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHCC-----HHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH
Confidence 4677888888888777766655567888899998888 5666666666666666666544 21221112222222222
Q ss_pred hcCCHHHHHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHHHhccC
Q 022992 104 DIGRLSMAARYYKEIAELYESE----------HNIEQTIVFFEKAADMFQNEE 146 (289)
Q Consensus 104 ~~g~~~~~a~~l~~la~~~~~~----------g~~~~A~~~y~~A~~~~~~~~ 146 (289)
+.=......++....+.++... .|....+++++||+++...--
T Consensus 667 KLLKK~DQCRaV~~CSHLfW~~~~~~~~~~~~rd~krVlECLQKaLriAds~m 719 (762)
T PF03635_consen 667 KLLKKPDQCRAVYLCSHLFWSTEISEETGSFYRDGKRVLECLQKALRIADSCM 719 (762)
T ss_dssp C-SSHHHHHHHHHHCHHHHHT-B-TTTTT-B---HHHHHHHHHHHHHHHHCSS
T ss_pred HhcCcHHHHHHHHHHHHHHhCCCCCccccccccChHHHHHHHHHHHHHHHHHh
Confidence 2223334455555556665432 367888899999998876543
No 386
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=66.99 E-value=86 Score=27.29 Aligned_cols=49 Identities=16% Similarity=0.095 Sum_probs=33.5
Q ss_pred HHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 022992 82 CYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFE 136 (289)
Q Consensus 82 ~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~ 136 (289)
.....++.+|...+..++...+++++ +...++.++...|+.+.|...+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~~~------~~~~la~~~l~~g~~e~A~~iL~ 192 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPENSE------AKLLLAECLLAAGDVEAAQAILA 192 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcccch------HHHHHHHHHHHcCChHHHHHHHH
Confidence 33344777777777777777766644 66777777777777777766654
No 387
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=66.93 E-value=12 Score=34.07 Aligned_cols=65 Identities=11% Similarity=0.108 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHH--HhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHh
Q 022992 155 KQKVAQYAAELEQYHKSIEIYEEIARQ--SLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (289)
Q Consensus 155 ~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~ 220 (289)
+..|..+++.+|+|..|++..+-+-.. .+-..+.. -....++.+|.+|+-++.+..|.+.|...+
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~-~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPA-CHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcc-hheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556888999999999998776210 01111100 011345678999999999999999998764
No 388
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=66.86 E-value=1.1e+02 Score=31.79 Aligned_cols=106 Identities=16% Similarity=0.159 Sum_probs=53.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH------HHHHHHHhcCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 022992 25 FGSKYEDAADLFDKAANSFKLAKSWDKAGATYV------KLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQA 98 (289)
Q Consensus 25 ~~~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~------~a~~~~~~~~~~~~aa~~~~~~a~~~~~~~~~~A~~~~~~A 98 (289)
.+++.+.=-.+|..=+..+...+.+++|+-+|+ +|+++|+..|++.++.....++. ..-++-..+.+.-
T Consensus 931 y~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~-----~~~de~~~~a~~L 1005 (1265)
T KOG1920|consen 931 YKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKLEKALKAYKECGDWREALSLAAQLS-----EGKDELVILAEEL 1005 (1265)
T ss_pred eccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhc-----CCHHHHHHHHHHH
Confidence 344444333444333444555566666666654 34455555566655443322110 0334444444555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 022992 99 VNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADM 141 (289)
Q Consensus 99 ~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~ 141 (289)
+......+.+..+|.++. +..+++++|+..|.+|.+.
T Consensus 1006 ~s~L~e~~kh~eAa~il~------e~~sd~~~av~ll~ka~~~ 1042 (1265)
T KOG1920|consen 1006 VSRLVEQRKHYEAAKILL------EYLSDPEEAVALLCKAKEW 1042 (1265)
T ss_pred HHHHHHcccchhHHHHHH------HHhcCHHHHHHHHhhHhHH
Confidence 555556666655555443 2336777777766665443
No 389
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=66.77 E-value=1e+02 Score=27.97 Aligned_cols=54 Identities=22% Similarity=0.242 Sum_probs=34.2
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC---CHHHHHHHHHHHHHH
Q 022992 44 KLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT---SSNEAISCLEQAVNM 101 (289)
Q Consensus 44 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~---~~~~A~~~~~~A~~~ 101 (289)
...++|..|...+.....- +..... ...+..+...|..- ++.+|.+++++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r---l~~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR---LPGREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh---CCchhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3667888888777776653 222222 45666666666433 788888888876654
No 390
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=66.20 E-value=1.5e+02 Score=29.85 Aligned_cols=56 Identities=13% Similarity=-0.022 Sum_probs=38.5
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHh
Q 022992 43 FKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCD 104 (289)
Q Consensus 43 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~ 104 (289)
..+.|+.++|..+.+. ....... --..+.-+-.||++. .+++|+.+|++++..|+.
T Consensus 53 l~r~gk~~ea~~~Le~-~~~~~~~-----D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEA-LYGLKGT-----DDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS 109 (932)
T ss_pred HHHhcCchhHHHHHhh-hccCCCC-----chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc
Confidence 3467888888844433 3222221 123666677889888 899999999999988875
No 391
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=65.78 E-value=21 Score=24.40 Aligned_cols=37 Identities=22% Similarity=0.055 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 022992 27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHL 64 (289)
Q Consensus 27 ~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~ 64 (289)
+-|+.|.++.++|..+ ...|+.++|+.+|.+++....
T Consensus 3 ~~~~~A~~~I~kaL~~-dE~g~~e~Al~~Y~~gi~~l~ 39 (79)
T cd02679 3 GYYKQAFEEISKALRA-DEWGDKEQALAHYRKGLRELE 39 (79)
T ss_pred hHHHHHHHHHHHHhhh-hhcCCHHHHHHHHHHHHHHHH
Confidence 3466666666666555 344888888888888877764
No 392
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=65.70 E-value=23 Score=23.88 Aligned_cols=34 Identities=24% Similarity=0.197 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 022992 30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHL 64 (289)
Q Consensus 30 ~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~ 64 (289)
.+|+.++.+|-.. ...|++++|..+|..+++.+.
T Consensus 4 ~~A~~l~~~Ave~-d~~~~y~eA~~~Y~~~i~~~~ 37 (75)
T cd02677 4 EQAAELIRLALEK-EEEGDYEAAFEFYRAGVDLLL 37 (75)
T ss_pred HHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHH
Confidence 4455555555333 344677777777777777665
No 393
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=64.93 E-value=23 Score=20.01 Aligned_cols=28 Identities=18% Similarity=0.336 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH--HHHHH
Q 022992 114 YYKEIAELYESEHNIEQTIVFFE--KAADM 141 (289)
Q Consensus 114 ~l~~la~~~~~~g~~~~A~~~y~--~A~~~ 141 (289)
.+..+|-.+...|++++|+..|+ -+..+
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~l 32 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCAL 32 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 45666777777799999999944 55544
No 394
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=64.47 E-value=8.2 Score=35.51 Aligned_cols=89 Identities=17% Similarity=0.092 Sum_probs=50.6
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 022992 44 KLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELY 122 (289)
Q Consensus 44 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~ 122 (289)
...++|+.|+..|.+|+++-.+. |..+.+=+.++.+. ++..|+.=+.+|+++-+ ..++++..-|...
T Consensus 15 l~~~~fd~avdlysKaI~ldpnc------a~~~anRa~a~lK~e~~~~Al~Da~kaie~dP------~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIELDPNC------AIYFANRALAHLKVESFGGALHDALKAIELDP------TYIKAYVRRGTAV 82 (476)
T ss_pred cccchHHHHHHHHHHHHhcCCcc------eeeechhhhhheeechhhhHHHHHHhhhhcCc------hhhheeeeccHHH
Confidence 34455666666666666663321 22333333444444 66666666666665543 3445666666666
Q ss_pred HhcCCHHHHHHHHHHHHHHHhc
Q 022992 123 ESEHNIEQTIVFFEKAADMFQN 144 (289)
Q Consensus 123 ~~~g~~~~A~~~y~~A~~~~~~ 144 (289)
...+.+.+|..-|++...+.+.
T Consensus 83 m~l~~~~~A~~~l~~~~~l~Pn 104 (476)
T KOG0376|consen 83 MALGEFKKALLDLEKVKKLAPN 104 (476)
T ss_pred HhHHHHHHHHHHHHHhhhcCcC
Confidence 6667777777777776666554
No 395
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=64.26 E-value=23 Score=19.64 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=16.5
Q ss_pred HHHHHHH--HHHHhc-----CCHHHHHHHHHHHHH
Q 022992 113 RYYKEIA--ELYESE-----HNIEQTIVFFEKAAD 140 (289)
Q Consensus 113 ~~l~~la--~~~~~~-----g~~~~A~~~y~~A~~ 140 (289)
.+...+| .++..- .|+++|+.+|++|.+
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHH
Confidence 3455566 444431 136788888887765
No 396
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=63.43 E-value=48 Score=23.10 Aligned_cols=61 Identities=8% Similarity=0.031 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 022992 113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEE 177 (289)
Q Consensus 113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 177 (289)
.....+|..+...|++++|++.+...+...+..++. .....+-.++..+|.-+.-..-|++
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~----~ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQLLELVRRDRDYEDD----AARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCC----HHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccccc----HHHHHHHHHHHHcCCCChHHHHHHH
Confidence 456667777777788888877777776655443221 2334455555555554444444433
No 397
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=62.57 E-value=11 Score=31.59 Aligned_cols=53 Identities=13% Similarity=0.187 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 022992 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE 145 (289)
Q Consensus 87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~ 145 (289)
|.+.|.+.|.+|+++.++ -+..|..+|...++.|+.+.|..-|++.+++.+.+
T Consensus 10 D~~aaaely~qal~lap~------w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 10 DAEAAAELYNQALELAPE------WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred ChHHHHHHHHHHhhcCch------hhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 677778888888877653 33478888888888888888888888888886653
No 398
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=62.20 E-value=22 Score=18.84 Aligned_cols=26 Identities=8% Similarity=0.250 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992 154 CKQKVAQYAAELEQYHKSIEIYEEIA 179 (289)
Q Consensus 154 ~~~~l~~~~~~~g~~~~A~~~~~~a~ 179 (289)
+++.+...+.+.|+++.|..+|++..
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 46677778888888888888887764
No 399
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=61.50 E-value=1.2e+02 Score=27.08 Aligned_cols=134 Identities=15% Similarity=0.079 Sum_probs=78.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 022992 42 SFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIG-RLSMAARYYKEIA 119 (289)
Q Consensus 42 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g-~~~~~a~~l~~la 119 (289)
+|...++|.+|...-...+.=.++++|...-...+..=..+|... ++.+|...+.-|....-..- .|...|..=..-|
T Consensus 137 Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSG 216 (411)
T KOG1463|consen 137 LYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSG 216 (411)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhcc
Confidence 455566666666666666655555555322222222222223222 44555555444433221111 2344555555667
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHH
Q 022992 120 ELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIY 175 (289)
Q Consensus 120 ~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 175 (289)
.++....||..|..||-+|.+-|...++...+..++..+--+..-++..++--.+.
T Consensus 217 Ilha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~ll 272 (411)
T KOG1463|consen 217 ILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALL 272 (411)
T ss_pred ceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 77777789999999999999998888877666666666666666667766655544
No 400
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=60.43 E-value=81 Score=24.75 Aligned_cols=89 Identities=9% Similarity=0.085 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccc
Q 022992 109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLL 188 (289)
Q Consensus 109 ~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 188 (289)
...-..|..+..+-...++.+.+...+. |+...+-. ....-.--|.+++..|+|.+|+.+++++.......
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~-ALrvLRP~-----~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~--- 77 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLD-ALRVLRPE-----FPELDLFDGWLHIVRGDWDDALRLLRELEERAPGF--- 77 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHH-HHHHhCCC-----chHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC---
Confidence 3455567777777777788888766664 55554422 23455667889999999999999999985332111
Q ss_pred ccchhhHHHHHHHHHHccCCHH
Q 022992 189 KYGVKGHLLNAGICQLCKGDVV 210 (289)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~gd~~ 210 (289)
.....+ ++.|...+||..
T Consensus 78 --p~~kAL--lA~CL~~~~D~~ 95 (160)
T PF09613_consen 78 --PYAKAL--LALCLYALGDPS 95 (160)
T ss_pred --hHHHHH--HHHHHHHcCChH
Confidence 111122 356767778753
No 401
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.14 E-value=1.3e+02 Score=26.95 Aligned_cols=97 Identities=6% Similarity=-0.094 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchh
Q 022992 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK 193 (289)
Q Consensus 114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 193 (289)
+....+-.+.+.|-|++|.+.-.+|+++-+-+.. +....+.++.-.|++.++.++..+....-. ++ .....
T Consensus 177 v~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~W------a~Ha~aHVlem~~r~Keg~eFM~~ted~Wr-~s--~mlas 247 (491)
T KOG2610|consen 177 VHGMYAFGLEECGIYDDAEKQADRALQINRFDCW------ASHAKAHVLEMNGRHKEGKEFMYKTEDDWR-QS--WMLAS 247 (491)
T ss_pred HHHHHHhhHHHhccchhHHHHHHhhccCCCcchH------HHHHHHHHHHhcchhhhHHHHHHhcccchh-hh--hHHHh
Confidence 3445577778889999999999999998664321 224567778888999999998776531110 01 11112
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHH
Q 022992 194 GHLLNAGICQLCKGDVVAITNALERY 219 (289)
Q Consensus 194 ~~~~~~~~~~l~~gd~~~A~~~~~~~ 219 (289)
..|-..+++|+..+.++.|.+.|++-
T Consensus 248 HNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 248 HNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred hhhHHHHHhhhcccchhHHHHHHHHH
Confidence 22334678888889999998888763
No 402
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=60.07 E-value=1.4e+02 Score=27.32 Aligned_cols=130 Identities=10% Similarity=0.060 Sum_probs=72.8
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHH
Q 022992 85 KTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELY--ESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYA 162 (289)
Q Consensus 85 ~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~--~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~ 162 (289)
.++++.|..-|+-- .+++..- .+..-|.++ +.+|+.+.|+.|-++|.+..+... ++. ...-.-.
T Consensus 133 eG~~~~Ar~kfeAM------l~dPEtR--llGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~---WA~---~AtLe~r 198 (531)
T COG3898 133 EGDYEDARKKFEAM------LDDPETR--LLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLP---WAA---RATLEAR 198 (531)
T ss_pred cCchHHHHHHHHHH------hcChHHH--HHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCc---hHH---HHHHHHH
Confidence 33777777766633 2343332 333334444 456999999999999988876543 332 2233445
Q ss_pred HHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCC
Q 022992 163 AELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSG 228 (289)
Q Consensus 163 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~ 228 (289)
+..|+|+.|+++.........-.+...-.....++.+--.-+..-|...|+..-..+.++.|.|.+
T Consensus 199 ~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvP 264 (531)
T COG3898 199 CAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVP 264 (531)
T ss_pred HhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccch
Confidence 678999999999876642221111101111122222222222334667777777777777777753
No 403
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.02 E-value=90 Score=30.11 Aligned_cols=18 Identities=17% Similarity=0.171 Sum_probs=13.9
Q ss_pred chHhhHHHHHHHHHHhhc
Q 022992 3 DQIARAEEFEKKAEKKLN 20 (289)
Q Consensus 3 ~~~~~a~~~~~~A~~~~k 20 (289)
+++++|-+.+-|-....+
T Consensus 507 eGiedAfevLgE~sE~v~ 524 (794)
T KOG0276|consen 507 EGIEDAFEVLGEVSESVK 524 (794)
T ss_pred hhHHHHHHHHhhhhhhee
Confidence 367888888888777777
No 404
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=59.56 E-value=78 Score=24.25 Aligned_cols=30 Identities=17% Similarity=0.192 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992 152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQ 181 (289)
Q Consensus 152 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 181 (289)
+..+..+|..|.+.|+..+|-+++.++-..
T Consensus 120 p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 120 PEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 356667777777777777777777666543
No 405
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.15 E-value=1.3e+02 Score=26.66 Aligned_cols=108 Identities=8% Similarity=0.056 Sum_probs=62.9
Q ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccch-hhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992 149 TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGV-KGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS 227 (289)
Q Consensus 149 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~ 227 (289)
.....+...++.+|.+-++|..|...+.-+-.. .+......+. -..+.+++..|+..+|..+|....+++ ++...+.
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~-tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRa-Sil~a~~ 177 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVLVGIPLD-TGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRA-SILQAES 177 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhccCcc-cchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH-HHhhhcc
Confidence 345678899999999999999999988655211 0110001111 123456788899999999999888885 3333333
Q ss_pred CchHHHHHHHHHHHHcccCHHHHHHHHHhcc
Q 022992 228 GTREYRLLSDIAASMDEEDIAKFTDVVKEFD 258 (289)
Q Consensus 228 ~~~e~~~l~~l~~a~~~~d~~~~~~al~~~~ 258 (289)
.+++-.+...+..|-...-...|-+|-+.|-
T Consensus 178 ~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYy 208 (399)
T KOG1497|consen 178 SNEQLQIEYKVCYARVLDYKRKFLEAAQRYY 208 (399)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444432222234444444443
No 406
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=56.05 E-value=1.2e+02 Score=25.68 Aligned_cols=52 Identities=13% Similarity=0.114 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHhc---cCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992 128 IEQTIVFFEKAADMFQN---EEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (289)
Q Consensus 128 ~~~A~~~y~~A~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 179 (289)
.++|...|++|.++... ..+|....-+++--.-.|--+++.++|+++.+++.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~af 198 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 198 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555555555555432 44444455555555555555555555555444443
No 407
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=56.00 E-value=1.5e+02 Score=26.51 Aligned_cols=18 Identities=17% Similarity=0.113 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 022992 49 WDKAGATYVKLANCHLKL 66 (289)
Q Consensus 49 ~~~A~~~~~~a~~~~~~~ 66 (289)
...|..+|++|+-++.-+
T Consensus 144 lK~A~~~fq~AAG~F~~l 161 (346)
T cd09240 144 LKLAAKLFQQAAGIFNHL 161 (346)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467778888888777543
No 408
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.60 E-value=2.3e+02 Score=28.50 Aligned_cols=46 Identities=11% Similarity=0.293 Sum_probs=28.9
Q ss_pred HHHHHHHHHhccCc-cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992 134 FFEKAADMFQNEEV-TTSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (289)
Q Consensus 134 ~y~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 179 (289)
.|.-|+.+....+. .....+++.+.|+.+...|++++|...|-+.+
T Consensus 349 ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI 395 (933)
T KOG2114|consen 349 LYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETI 395 (933)
T ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHc
Confidence 44455555554432 34455677777777777777777777776654
No 409
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=55.52 E-value=87 Score=26.24 Aligned_cols=54 Identities=17% Similarity=0.075 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 022992 89 NEAISCLEQAVNMFCDI---GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMF 142 (289)
Q Consensus 89 ~~A~~~~~~A~~~~~~~---g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~ 142 (289)
++|..+|++|.++.... -+|...+-+|+----.|...|++++|+..-++|++-.
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a 199 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEA 199 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 57888888888888762 3455555555555555577788988888888877654
No 410
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=53.44 E-value=2.1e+02 Score=27.39 Aligned_cols=111 Identities=8% Similarity=0.033 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC---CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC
Q 022992 50 DKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT---SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH 126 (289)
Q Consensus 50 ~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~---~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g 126 (289)
.+-...-++.+-+....|....---++-++|.+-.-. +-..+++.|.+|+...+.--+-. -..=+.-+|..+...+
T Consensus 254 ~e~~~lqq~lLw~lyd~ghl~~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~-HvYPYty~gg~~yR~~ 332 (618)
T PF05053_consen 254 VELAQLQQDLLWLLYDMGHLARYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNH-HVYPYTYLGGYYYRHK 332 (618)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTT-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT---SHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCchhhCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCC-ccccceehhhHHHHHH
Confidence 4445555566666555553222222444555554322 55678888998887766543311 1223445666666679
Q ss_pred CHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHH
Q 022992 127 NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQY 161 (289)
Q Consensus 127 ~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~ 161 (289)
++.+|+..+-.|....+.-+..+.--++|..+-+|
T Consensus 333 ~~~eA~~~Wa~aa~Vi~~YnY~reDeEiYKEfleI 367 (618)
T PF05053_consen 333 RYREALRSWAEAADVIRKYNYSREDEEIYKEFLEI 367 (618)
T ss_dssp -HHHHHHHHHHHHHHHTTSB--GGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccCccHHHHHHHHHHH
Confidence 99999999999999887765544444566555444
No 411
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=53.29 E-value=1.4e+02 Score=25.25 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=16.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Q 022992 39 AANSFKLAKSWDKAGATYVKLANC 62 (289)
Q Consensus 39 A~~~~~~~g~~~~A~~~~~~a~~~ 62 (289)
.+.+....++|++.+.+..++++.
T Consensus 7 ~Aklaeq~eRyddm~~~mk~~~~~ 30 (244)
T smart00101 7 MAKLAEQAERYEEMVEFMEKVAKT 30 (244)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhh
Confidence 345555667888888888777765
No 412
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.89 E-value=2e+02 Score=28.95 Aligned_cols=51 Identities=6% Similarity=0.091 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 022992 93 SCLEQAVNMFCDIG-RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ 143 (289)
Q Consensus 93 ~~~~~A~~~~~~~g-~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~ 143 (289)
..|.-|+.+....+ +....+.+..+.|..+...|++++|+.+|-+++...+
T Consensus 348 ~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le 399 (933)
T KOG2114|consen 348 NLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE 399 (933)
T ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC
Confidence 34666777776654 5667888999999999988999999999999987654
No 413
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=52.77 E-value=2e+02 Score=26.87 Aligned_cols=61 Identities=11% Similarity=0.175 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 022992 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI 178 (289)
Q Consensus 110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 178 (289)
..|+++... ..+...|+|.++.-+-.--.++.+. ..+++-+|-++....+|++|.+++.+.
T Consensus 461 eian~LaDA-EyLysqgey~kc~~ys~WL~~iaPS-------~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 461 EIANFLADA-EYLYSQGEYHKCYLYSSWLTKIAPS-------PQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHH-HHHHhcccHHHHHHHHHHHHHhCCc-------HHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 345555444 3344459999988887777777652 368999999999999999999999876
No 414
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=52.52 E-value=1.4e+02 Score=25.02 Aligned_cols=26 Identities=15% Similarity=0.078 Sum_probs=20.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHH
Q 022992 38 KAANSFKLAKSWDKAGATYVKLANCH 63 (289)
Q Consensus 38 ~A~~~~~~~g~~~~A~~~~~~a~~~~ 63 (289)
..+.+....|+|++.+.+..+.++..
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~ 31 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMN 31 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccC
Confidence 44666777888999999998888873
No 415
>KOG1938 consensus Protein with predicted involvement in meiosis (GSG1) [Cell cycle control, cell division, chromosome partitioning]
Probab=48.01 E-value=1.5e+02 Score=30.17 Aligned_cols=53 Identities=4% Similarity=-0.024 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHH
Q 022992 108 LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQ 160 (289)
Q Consensus 108 ~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~ 160 (289)
+...+...+..|..+...|.+..|+++|.+|+..+...+.....-..++.++.
T Consensus 312 ~~ktffHpVLal~r~s~anqp~ha~R~y~~ai~v~~~~~ws~~edh~~f~i~~ 364 (960)
T KOG1938|consen 312 PRKTFFHPVLALIRFSSANQPKHALRCYRQAIPVLKKPTWSFAEDHLYFTILH 364 (960)
T ss_pred cchhhcceeehhhhcccCCChhHHHHHHHHHhhhcCCCCcchhHHhHHHhHHH
Confidence 33333334444444444444444444444444444444433333333333333
No 416
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=47.81 E-value=4.6e+02 Score=29.91 Aligned_cols=99 Identities=12% Similarity=0.152 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-CccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccch
Q 022992 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNE-EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGV 192 (289)
Q Consensus 114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 192 (289)
-|.+....-....+..+-|-.+++++-..... +.....++++.+.|.+-...|+++.|-.+.-.+... +.
T Consensus 1631 ~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~---------r~ 1701 (2382)
T KOG0890|consen 1631 NWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES---------RL 1701 (2382)
T ss_pred hHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc---------cc
Confidence 34444444444455666666777776554333 445677899999999999999999999888777532 23
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022992 193 KGHLLNAGICQLCKGDVVAITNALERYQD 221 (289)
Q Consensus 193 ~~~~~~~~~~~l~~gd~~~A~~~~~~~~~ 221 (289)
.+.+..-+...+..||...|...++..++
T Consensus 1702 ~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~ 1730 (2382)
T KOG0890|consen 1702 PEIVLERAKLLWQTGDELNALSVLQEILS 1730 (2382)
T ss_pred chHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 33445555667889999999999998875
No 417
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=46.80 E-value=87 Score=26.93 Aligned_cols=62 Identities=8% Similarity=0.110 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccc
Q 022992 126 HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNL 187 (289)
Q Consensus 126 g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 187 (289)
-..+.|.++..+|+-..+..|+...+.-|....+..+....+|+-|..+|..+......+.+
T Consensus 53 ~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d~L 114 (368)
T COG5091 53 ATMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDDTL 114 (368)
T ss_pred cChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcccc
Confidence 45789999999999999998888777778888888899999999999999999755555443
No 418
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.70 E-value=2.7e+02 Score=26.43 Aligned_cols=76 Identities=9% Similarity=-0.037 Sum_probs=62.8
Q ss_pred hcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc-cCccchHHHHHHHHHHHHHHhcC-HHHHHHHHHHHH
Q 022992 104 DIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQN-EEVTTSANQCKQKVAQYAAELEQ-YHKSIEIYEEIA 179 (289)
Q Consensus 104 ~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~ 179 (289)
...+.+...--..-+|.++..+|+...|..+|...++-... ..++...+.++..+|.++..+|. ..++.+++.++-
T Consensus 441 ~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr 518 (546)
T KOG3783|consen 441 KIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAR 518 (546)
T ss_pred CCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHH
Confidence 44577777778888999999999999999999999866433 33445567889999999999988 999999999985
No 419
>KOG1938 consensus Protein with predicted involvement in meiosis (GSG1) [Cell cycle control, cell division, chromosome partitioning]
Probab=45.58 E-value=3.5e+02 Score=27.67 Aligned_cols=62 Identities=16% Similarity=0.148 Sum_probs=39.5
Q ss_pred HHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 022992 78 DAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAAD 140 (289)
Q Consensus 78 ~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~ 140 (289)
-++..|... .+..|+.+|.+|+..+...+.....-..+..++..|.- -..+.|-..+.+.+.
T Consensus 321 Lal~r~s~anqp~ha~R~y~~ai~v~~~~~ws~~edh~~f~i~~~y~l-~~~D~a~~~f~~~i~ 383 (960)
T KOG1938|consen 321 LALIRFSSANQPKHALRCYRQAIPVLKKPTWSFAEDHLYFTILHVYLL-CQEDDADEEFSKLIA 383 (960)
T ss_pred ehhhhcccCCChhHHHHHHHHHhhhcCCCCcchhHHhHHHhHHHhhhh-hcchhHHHHHHHHHh
Confidence 333344333 56678888888888888777777777777777774443 445666666655554
No 420
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=45.37 E-value=1.4e+02 Score=23.14 Aligned_cols=63 Identities=10% Similarity=0.025 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh-ccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ-NEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (289)
Q Consensus 110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 179 (289)
.....+..+...-...++++.+...+. |+.+.+ +.. .+-.--|.+++..|+|++|+.++++..
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLd-ALrvLrP~~~------e~d~~dg~l~i~rg~w~eA~rvlr~l~ 71 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLD-ALRVLRPNLK------ELDMFDGWLLIARGNYDEAARILRELL 71 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHhCCCcc------ccchhHHHHHHHcCCHHHHHHHHHhhh
Confidence 344455555555555688888666654 444443 322 344557889999999999999999986
No 421
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=44.84 E-value=1e+02 Score=21.38 Aligned_cols=53 Identities=17% Similarity=0.137 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccC
Q 022992 194 GHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEED 246 (289)
Q Consensus 194 ~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d 246 (289)
...+.++..+...|++++|.+.+-.....++.+.+..-...+-.+...+..+|
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 34566778888999999999998888887777754433344444555554444
No 422
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.69 E-value=34 Score=31.17 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (289)
Q Consensus 111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~ 144 (289)
.|.+..+.|.++.++++.++|+.+|++++.+..+
T Consensus 21 ~A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~ 54 (560)
T KOG2709|consen 21 GAYASVEQGLCYDEVNDWENALAMYEKGLNLIVE 54 (560)
T ss_pred HHHHHHHhhcchhhhcCHHHHHHHHHHHHHHHHh
Confidence 5667889999999999999999999999999876
No 423
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=44.53 E-value=98 Score=27.27 Aligned_cols=40 Identities=30% Similarity=0.432 Sum_probs=30.8
Q ss_pred Ccch--HhhHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHHHH
Q 022992 1 MGDQ--IARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKL 45 (289)
Q Consensus 1 ~~~~--~~~a~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A~~~~~~ 45 (289)
||.. .++|.+|+++|-..=+. ++|.+|..+|..|...|..
T Consensus 1 ms~~~~l~kaI~lv~kA~~eD~a-----~nY~eA~~lY~~aleYF~~ 42 (439)
T KOG0739|consen 1 MSNGSFLQKAIDLVKKAIDEDNA-----KNYEEALRLYQNALEYFLH 42 (439)
T ss_pred CCcchHHHHHHHHHHHHhhhcch-----hchHHHHHHHHHHHHHHHH
Confidence 5553 77899999998665552 5999999999999876553
No 424
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=44.51 E-value=2.1e+02 Score=25.65 Aligned_cols=19 Identities=16% Similarity=0.277 Sum_probs=13.0
Q ss_pred CHHHHHHHHHHHHHHHHhc
Q 022992 48 SWDKAGATYVKLANCHLKL 66 (289)
Q Consensus 48 ~~~~A~~~~~~a~~~~~~~ 66 (289)
....|..+|++|+-++.-+
T Consensus 130 glK~A~~~fq~AAG~F~~l 148 (355)
T cd09241 130 GLKRACSYFQASAGCFEYI 148 (355)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3677777777777777543
No 425
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=44.19 E-value=57 Score=29.81 Aligned_cols=65 Identities=14% Similarity=0.103 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc---CccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNE---EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (289)
Q Consensus 114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 179 (289)
.+..+..++.-+|||..|++..+- +++-+.. ..+.-...++..+|-+|.-+++|.+|++.|..++
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677788999999887642 2221110 0111122467889999999999999999999986
No 426
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=43.41 E-value=2.3e+02 Score=24.81 Aligned_cols=50 Identities=8% Similarity=0.110 Sum_probs=42.1
Q ss_pred HhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 022992 123 ESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI 178 (289)
Q Consensus 123 ~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 178 (289)
...|++.+|...|..++...++.+ .+...++.++...|+.+.|..++...
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~~~------~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPENS------EAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcccc------hHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 344999999999999999877653 57788999999999999999887654
No 427
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=42.37 E-value=1.4e+02 Score=22.65 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC
Q 022992 29 YEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLE 67 (289)
Q Consensus 29 ~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 67 (289)
|+.+++++..|-.+ ...+++++..+...||.++...+.
T Consensus 28 yeg~l~~l~~A~~a-ie~~~i~~k~~~i~ka~~Ii~eL~ 65 (132)
T COG1516 28 YEGALKFLKRAKEA-IEQEDIEEKNESIDKAIDIITELR 65 (132)
T ss_pred HHHHHHHHHHHHHH-HHhccHHHHHHHHHHHHHHHHHHH
Confidence 45555555444433 456777777777777777776543
No 428
>PF04353 Rsd_AlgQ: Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ; InterPro: IPR007448 This family includes bacterial transcriptional regulators that are thought to act through an interaction with the conserved region 4 of the sigma(70) subunit of RNA polymerase. The Pseudomonas aeruginosa homologue, AlgQ, positively regulates virulence gene expression and is associated with the mucoid phenotype observed in P. aeruginosa isolates from cystic fibrosis patients.; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_A.
Probab=41.72 E-value=1.4e+02 Score=23.26 Aligned_cols=86 Identities=16% Similarity=0.200 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHHHhcCC
Q 022992 30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT--SSNEAISCLEQAVNMFCDIGR 107 (289)
Q Consensus 30 ~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~--~~~~A~~~~~~A~~~~~~~g~ 107 (289)
.++++.|-+...=|...|.|+ .|++...-.+..|+. .+..+..+|.+. ..+.++.+..+-.+......+
T Consensus 51 ~~~l~~FCq~LVDYvSaGHFe----IYe~l~~e~~~~~~~-----~l~la~~lyp~i~~tTe~~l~FnDky~~~~~d~~~ 121 (153)
T PF04353_consen 51 EEALQNFCQQLVDYVSAGHFE----IYEQLIDEAEAFGDS-----ALALANQLYPRIEETTEQALDFNDKYAEAAIDEDN 121 (153)
T ss_dssp -HHHHHHHHHHHHHHHHHHHT----HHHHHHTT--SHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHHhccchh----HHHHHHHHHHHcCch-----HHHHHHHHHHHHHHHHHHHHHHhcccCccccchhH
Confidence 456666666666677776665 666666554443322 444555666555 556677777776665555566
Q ss_pred HHHHHHHHHHHHHHHHh
Q 022992 108 LSMAARYYKEIAELYES 124 (289)
Q Consensus 108 ~~~~a~~l~~la~~~~~ 124 (289)
.......+..+|..+..
T Consensus 122 ~~~l~~dLS~lGe~Le~ 138 (153)
T PF04353_consen 122 LEELDQDLSRLGEALEE 138 (153)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67777778888887765
No 429
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=41.69 E-value=2.1e+02 Score=23.97 Aligned_cols=39 Identities=15% Similarity=0.306 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHH---------HhcCCHHHHHHHHHHHHHHHhccCcc
Q 022992 110 MAARYYKEIAELY---------ESEHNIEQTIVFFEKAADMFQNEEVT 148 (289)
Q Consensus 110 ~~a~~l~~la~~~---------~~~g~~~~A~~~y~~A~~~~~~~~~~ 148 (289)
-.|+.+.-+|..+ ...+++..|+.++++|+.+.++.|-.
T Consensus 167 vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GVK 214 (230)
T PHA02537 167 VRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGVK 214 (230)
T ss_pred HHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCChH
Confidence 3577777778877 34578899999999999999887743
No 430
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=41.11 E-value=1.7e+02 Score=25.65 Aligned_cols=60 Identities=18% Similarity=0.200 Sum_probs=43.8
Q ss_pred HHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 022992 78 DAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ 143 (289)
Q Consensus 78 ~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~ 143 (289)
..+..|... .+.+|+++.++++.+.+-... .+..+=.++...||--.++.+|++-.+..+
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldpL~e~------~nk~lm~~la~~gD~is~~khyerya~vle 344 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDPLSEQ------DNKGLMASLATLGDEISAIKHYERYAEVLE 344 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcChhhhH------HHHHHHHHHHHhccchhhhhHHHHHHHHHH
Confidence 334455555 889999999999988775554 455556667777998899999888766544
No 431
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.54 E-value=2.6e+02 Score=27.19 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=11.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHH
Q 022992 198 NAGICQLCKGDVVAITNALERY 219 (289)
Q Consensus 198 ~~~~~~l~~gd~~~A~~~~~~~ 219 (289)
.+|...+..|++.-|.+||.++
T Consensus 671 ~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 671 QLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred HHHHHHhhcccchhHHHHHHhh
Confidence 3444445555555555555554
No 432
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=39.92 E-value=2.8e+02 Score=24.91 Aligned_cols=101 Identities=13% Similarity=0.078 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc--------------cCcc---------chHHHHHHHHHHHHHHhcCHH
Q 022992 113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQN--------------EEVT---------TSANQCKQKVAQYAAELEQYH 169 (289)
Q Consensus 113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~--------------~~~~---------~~~~~~~~~l~~~~~~~g~~~ 169 (289)
.+|..++.++..+|++..|.++.++|+-.++. .|.. +.--.++......+.+.|.+.
T Consensus 41 dtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~r 120 (360)
T PF04910_consen 41 DTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWR 120 (360)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHH
Confidence 46777888888888888888888888766551 1110 111134556667778899999
Q ss_pred HHHHHHHHHHHHHhh-ccccccchhhHHHHHHHHHHccCCHHHHHHHHHHH
Q 022992 170 KSIEIYEEIARQSLN-NNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY 219 (289)
Q Consensus 170 ~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~ 219 (289)
.|+++..-....... ++ ++ .++.+-..-+..++++--...++..
T Consensus 121 TAlE~~KlLlsLdp~~DP---~g---~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 121 TALEWCKLLLSLDPDEDP---LG---VLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHHHHHHHhcCCCCCc---ch---hHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 999999877644433 22 22 2333433344556665555555543
No 433
>COG3160 Rsd Regulator of sigma D [Transcription]
Probab=39.22 E-value=1.7e+02 Score=22.32 Aligned_cols=89 Identities=13% Similarity=0.122 Sum_probs=52.0
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHHHh
Q 022992 27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT--SSNEAISCLEQAVNMFCD 104 (289)
Q Consensus 27 ~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~--~~~~A~~~~~~A~~~~~~ 104 (289)
|-..+|.+.|-+...=|...|.|+ .|++...-....|++ .+..++.+|-+. ..+.++.+.......-.+
T Consensus 48 plnakaL~~FCq~LvDYlSaGHF~----iYe~i~~k~~~~g~~-----~l~la~kI~p~l~a~Tq~imnfnD~~~n~~~d 118 (162)
T COG3160 48 PLNAKALDDFCQSLVDYLSAGHFS----IYERILHKLEGNGDR-----QLALAAKIWPQLEANTQQIMNFNDSSLNTAID 118 (162)
T ss_pred CCCHHHHHHHHHHHHHHHhccchH----HHHHHHHHHhccCcH-----HHHHHHHHHHHHHhhHHHHHhhcchhhccccC
Confidence 445678888888888888888887 788877777777763 333445555443 344444444434333333
Q ss_pred cCCHHHHHHHHHHHHHHHHh
Q 022992 105 IGRLSMAARYYKEIAELYES 124 (289)
Q Consensus 105 ~g~~~~~a~~l~~la~~~~~ 124 (289)
.++-...-+.+..+|..+..
T Consensus 119 ~d~cle~qqaLs~ige~Le~ 138 (162)
T COG3160 119 HDNCLEFQQALSDIGEALEA 138 (162)
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 33333334455555555543
No 434
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=38.72 E-value=62 Score=28.45 Aligned_cols=17 Identities=24% Similarity=0.602 Sum_probs=9.9
Q ss_pred CCHHHHHHHHHHHHHHH
Q 022992 126 HNIEQTIVFFEKAADMF 142 (289)
Q Consensus 126 g~~~~A~~~y~~A~~~~ 142 (289)
++|++|..+|+-|+++|
T Consensus 24 ~nY~eA~~lY~~aleYF 40 (439)
T KOG0739|consen 24 KNYEEALRLYQNALEYF 40 (439)
T ss_pred hchHHHHHHHHHHHHHH
Confidence 55566666666665554
No 435
>PRK11718 anti-RNA polymerase sigma 70 factor; Provisional
Probab=38.61 E-value=1.9e+02 Score=22.68 Aligned_cols=86 Identities=19% Similarity=0.197 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHHHhcCC
Q 022992 30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT--SSNEAISCLEQAVNMFCDIGR 107 (289)
Q Consensus 30 ~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~--~~~~A~~~~~~A~~~~~~~g~ 107 (289)
.++++.|-+...=|...|.|+ .|++...-.+..|+. ....+..+|-+. ..+.++.+..+-.+......+
T Consensus 51 ~~~l~~FC~~LVDYvSaGHFe----IYe~li~e~e~~~~~-----~l~la~~lyp~I~~tTe~~L~FnD~y~~~~~~~~~ 121 (161)
T PRK11718 51 EKALDDFCQLLVDYVSAGHFE----IYEQLVHEAEAFGDL-----ALALAAQIYPRLEATTQQALDFNDKYLETAIDDDN 121 (161)
T ss_pred HHHHHHHHHHHHHHHcccchH----HHHHHHHHHHHhCch-----HHHHHHHHHHHHHHHHHHHHHHhccccccccchhH
Confidence 567888888888888899887 888888777776654 244455556554 444555555444332222123
Q ss_pred HHHHHHHHHHHHHHHHh
Q 022992 108 LSMAARYYKEIAELYES 124 (289)
Q Consensus 108 ~~~~a~~l~~la~~~~~ 124 (289)
...-...+..+|.++..
T Consensus 122 ~~~~~~dLS~lGe~Le~ 138 (161)
T PRK11718 122 LLEFQQDLSDLGEALEE 138 (161)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34556677788877775
No 436
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=37.86 E-value=1.6e+02 Score=25.33 Aligned_cols=74 Identities=14% Similarity=0.153 Sum_probs=58.5
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhc
Q 022992 106 GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (289)
Q Consensus 106 g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 185 (289)
......++.+.++=..+...++.+.|..+-++.+.+.+.+.. -+..-|-+|..+|.+.-|++-++..+..+..+
T Consensus 175 ~~~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~------eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~ 248 (269)
T COG2912 175 SNREILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPY------EIRDRGLIYAQLGCYHVALEDLSYFVEHCPDD 248 (269)
T ss_pred cHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChh------hccCcHHHHHhcCCchhhHHHHHHHHHhCCCc
Confidence 444556777888888888889999999999999998776532 24566889999999999999999877665443
No 437
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=37.58 E-value=1.6e+02 Score=21.52 Aligned_cols=94 Identities=7% Similarity=0.099 Sum_probs=44.6
Q ss_pred HHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHhccCcc-chHHHHHH
Q 022992 82 CYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE----HNIEQTIVFFEKAADMFQNEEVT-TSANQCKQ 156 (289)
Q Consensus 82 ~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~----g~~~~A~~~y~~A~~~~~~~~~~-~~~~~~~~ 156 (289)
++.+++.-+|++..+..+.......+. .-....-|.++..+ .+++-=..++.-+++.+.+.... +..+..+.
T Consensus 6 ~~~rGnhiKAL~iied~i~~h~~~~~~---~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~ 82 (111)
T PF04781_consen 6 YFARGNHIKALEIIEDLISRHGEDESS---WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLF 82 (111)
T ss_pred HHHccCHHHHHHHHHHHHHHccCCCch---HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence 345557788888888777665544432 12333334443322 34554445555555555443211 12234444
Q ss_pred HHHHHHHHhcCHHHHHHHHHHH
Q 022992 157 KVAQYAAELEQYHKSIEIYEEI 178 (289)
Q Consensus 157 ~l~~~~~~~g~~~~A~~~~~~a 178 (289)
.+|.=+.....|+++..-.+++
T Consensus 83 ~la~~l~s~~~Ykk~v~kak~~ 104 (111)
T PF04781_consen 83 ELASQLGSVKYYKKAVKKAKRG 104 (111)
T ss_pred HHHHHhhhHHHHHHHHHHHHHH
Confidence 4444333333444444444443
No 438
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=36.93 E-value=51 Score=24.55 Aligned_cols=30 Identities=13% Similarity=0.168 Sum_probs=23.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992 115 YKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (289)
Q Consensus 115 l~~la~~~~~~g~~~~A~~~y~~A~~~~~~ 144 (289)
-..+|..+...|++++|+.+|-+|+.++..
T Consensus 66 qV~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 66 QVQLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 456677777789999999999999988764
No 439
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=36.52 E-value=3.3e+02 Score=24.75 Aligned_cols=54 Identities=20% Similarity=0.125 Sum_probs=34.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC---CHHHHHHHHH
Q 022992 42 SFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT---SSNEAISCLE 96 (289)
Q Consensus 42 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~---~~~~A~~~~~ 96 (289)
.+...++|..|...|..+..--.. +.....-..+..+..+|..- ++++|.++++
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~-~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLS-AVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccC-hhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 445667888888888877754211 22233445666677776443 8888888887
No 440
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=35.09 E-value=2.7e+02 Score=23.32 Aligned_cols=114 Identities=11% Similarity=0.007 Sum_probs=56.5
Q ss_pred HHhcCCHHHHHHHHHHHHHHHhccCcc------chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhH
Q 022992 122 YESEHNIEQTIVFFEKAADMFQNEEVT------TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGH 195 (289)
Q Consensus 122 ~~~~g~~~~A~~~y~~A~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 195 (289)
+...|+++.|+++..-|++.--..... ...++-...-+......|..-+. +|..........-...-.+..-
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~--~~~~~~~~l~~~~dmpd~vrAK 170 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEP--YFLRVFLDLTTEWDMPDEVRAK 170 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCCh--HHHHHHHHHHhcCCCChHHHHH
Confidence 344599999999999999863322211 11222222333333444431110 1222211111111111122223
Q ss_pred HHH-HHHHHH---------ccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHH
Q 022992 196 LLN-AGICQL---------CKGDVVAITNALERYQDMDPTFSGTREYRLLSD 237 (289)
Q Consensus 196 ~~~-~~~~~l---------~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~ 237 (289)
+++ +|..++ ..++...|...++++.++++..+...+..-+..
T Consensus 171 l~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GVK~~i~~l~~ 222 (230)
T PHA02537 171 LYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGVKKDIERLER 222 (230)
T ss_pred HHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Confidence 444 466654 234677899999999999988774443333333
No 441
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=35.07 E-value=2.5e+02 Score=22.92 Aligned_cols=64 Identities=11% Similarity=0.072 Sum_probs=37.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 022992 115 YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI 178 (289)
Q Consensus 115 l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 178 (289)
+...+......|+.++|...+.+|.+......+.-.--.-+...|.+-..+..|-+|.-.|.-.
T Consensus 32 ~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l 95 (204)
T COG2178 32 LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSIL 95 (204)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 3344455555689999999999998887654321111111223344444556777777776544
No 442
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=34.56 E-value=1.3e+02 Score=21.79 Aligned_cols=35 Identities=23% Similarity=0.271 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (289)
Q Consensus 110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~ 144 (289)
..+..+...|..+...||.+.|--+|-+.+.++..
T Consensus 36 rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~~k 70 (115)
T PF08969_consen 36 RSANKLLREAEEYRQEGDEEQAYVLYMRYLTLVEK 70 (115)
T ss_dssp HHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 45667777888888889999999999999999843
No 443
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=34.34 E-value=3.5e+02 Score=24.45 Aligned_cols=63 Identities=19% Similarity=0.317 Sum_probs=42.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHH
Q 022992 75 AYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES--EHNIEQTIVFFEKAADM 141 (289)
Q Consensus 75 ~~~~~a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~--~g~~~~A~~~y~~A~~~ 141 (289)
.+..+-.+|.+.++..|.+.+.....- -.++.. -..+..++..|.. .-++++|.+++++.+..
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~r--l~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRR--LPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh--CCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344455556556899999988887764 122222 4567777777654 37889999998887664
No 444
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=34.01 E-value=3.6e+02 Score=24.41 Aligned_cols=133 Identities=17% Similarity=0.246 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHHHHH-------hcCCHHHHHHHHHHHHHHHccC-----CHHHHHHHHHHHHHHHHhcC-------CH
Q 022992 48 SWDKAGATYVKLANCHL-------KLESKHEAAQAYVDAAHCYKKT-----SSNEAISCLEQAVNMFCDIG-------RL 108 (289)
Q Consensus 48 ~~~~A~~~~~~a~~~~~-------~~~~~~~aa~~~~~~a~~~~~~-----~~~~A~~~~~~A~~~~~~~g-------~~ 108 (289)
++++|..+|..+...+. --|....-.......+.+|+.. +.+.-+...++-+++....= ..
T Consensus 139 ~f~dAr~vF~~~~~~l~~A~~yf~ld~~~t~hv~I~qd~S~lYk~LafFE~~~~r~~kmhkRR~d~Le~~~~~Ln~~~y~ 218 (371)
T PF12309_consen 139 DFDDAREVFLNGQKWLNKAKEYFVLDGFVTDHVQILQDISELYKYLAFFEEDPDRQIKMHKRRADLLEPLLKELNPQYYL 218 (371)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 44555555544444433 2334444455555666666544 66666666666655543211 11
Q ss_pred HHHHHHHHHHHHHHHhc-------CC--------------------HHHHHHHHHHHHHHHhccC-----------ccch
Q 022992 109 SMAARYYKEIAELYESE-------HN--------------------IEQTIVFFEKAADMFQNEE-----------VTTS 150 (289)
Q Consensus 109 ~~~a~~l~~la~~~~~~-------g~--------------------~~~A~~~y~~A~~~~~~~~-----------~~~~ 150 (289)
.....++..+|.+|... .+ ...|+.+|+.=++.+.... ....
T Consensus 219 ~~~rql~fElae~~~~i~dlk~~~~~~~~~~~~~~~~~~~~kin~l~~~ai~~y~~fl~s~~~~~~~~~~~~~~~d~~~~ 298 (371)
T PF12309_consen 219 NLCRQLWFELAEIYSEIMDLKLEKLDEPQNDNEPPDDHALKKINQLCSKAIKYYQKFLDSYKSPDSGKLPEKLDEDELRP 298 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCcHHHHHH
Confidence 22333444555554332 11 3567788888888776432 1133
Q ss_pred HHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHH
Q 022992 151 ANQCKQKVAQYAAEL---------EQYHKSIEIYEEIAR 180 (289)
Q Consensus 151 ~~~~~~~l~~~~~~~---------g~~~~A~~~~~~a~~ 180 (289)
.-.++..+|.+|.+. +....++.+|+.++.
T Consensus 299 ~l~a~f~~arl~~K~~~~~~~~~~~~l~~sl~~y~~vv~ 337 (371)
T PF12309_consen 299 YLYAYFHIARLYSKLITSDPKEQLENLEKSLEYYKWVVD 337 (371)
T ss_pred HHHHHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHH
Confidence 345677788777543 566777777777753
No 445
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=33.27 E-value=97 Score=28.15 Aligned_cols=34 Identities=12% Similarity=0.288 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992 109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (289)
Q Consensus 109 ~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~ 144 (289)
...|.++..+|.+|.. +-.+=-.+|.+|-++..+
T Consensus 354 v~vAEa~I~LGNL~d~--eS~eQe~~Y~eAE~iL~k 387 (404)
T PF12753_consen 354 VDVAEAMIDLGNLYDN--ESKEQEKAYKEAEKILKK 387 (404)
T ss_dssp HHHHHHHHHHHHH-SS--HHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhccccc--chHHHHHHHHHHHHHHHH
Confidence 3455555555655552 223334566666666554
No 446
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=32.82 E-value=2.4e+02 Score=22.12 Aligned_cols=67 Identities=15% Similarity=0.135 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC
Q 022992 153 QCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTF 226 (289)
Q Consensus 153 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~ 226 (289)
..+..+..+-...++.+++..++.-.-.. .+ +....-.--|..|...|++.+|...|+...+-.+.+
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvL--RP-----~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~ 77 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVL--RP-----EFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGF 77 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHh--CC-----CchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Confidence 45666677777888999988888665321 11 223333445778889999999999999875544443
No 447
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=28.57 E-value=2.8e+02 Score=21.51 Aligned_cols=30 Identities=17% Similarity=0.175 Sum_probs=21.5
Q ss_pred HhhHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH
Q 022992 5 IARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKA 39 (289)
Q Consensus 5 ~~~a~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A 39 (289)
+.+....+++|++.++. |+...|.+....+
T Consensus 72 ~~~~~~ai~~a~~~l~~-----g~~~~A~~~L~~~ 101 (155)
T PF10938_consen 72 TPEKKAAIKTANELLKK-----GDKQAAREILKLA 101 (155)
T ss_dssp -HHHHHHHHHHHHHHHT-----T-HHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHhC-----CCHHHHHHHHHHh
Confidence 45677788888888884 5778888777776
No 448
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=28.40 E-value=2.8e+02 Score=25.07 Aligned_cols=65 Identities=6% Similarity=0.009 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-Ccc-chHHHHHHHHHHHHHHhcCHHHHHH
Q 022992 109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE-EVT-TSANQCKQKVAQYAAELEQYHKSIE 173 (289)
Q Consensus 109 ~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~-~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 173 (289)
.....-+...|..+...+++++|..-|..|..+.... |.. ..-.++++-.|..+...++....+-
T Consensus 38 ~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL 104 (400)
T KOG4563|consen 38 EKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVL 104 (400)
T ss_pred HHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455567777888877899999999999998876543 222 2234567777777777666655443
No 449
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=28.12 E-value=3.7e+02 Score=22.66 Aligned_cols=27 Identities=11% Similarity=0.070 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992 153 QCKQKVAQYAAELEQYHKSIEIYEEIA 179 (289)
Q Consensus 153 ~~~~~l~~~~~~~g~~~~A~~~~~~a~ 179 (289)
.+..-+-.+++-.|+|++|..-++-+.
T Consensus 36 ~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 36 GGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred cchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 445555556666666666666665554
No 450
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=27.88 E-value=2.5e+02 Score=25.14 Aligned_cols=148 Identities=17% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHccCCHHHHHHHHHH
Q 022992 29 YEDAADLFDKAANSFKL--------AKSWDKAGATYVKLANCHL---KLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQ 97 (289)
Q Consensus 29 ~~~A~~~~~~A~~~~~~--------~g~~~~A~~~~~~a~~~~~---~~~~~~~aa~~~~~~a~~~~~~~~~~A~~~~~~ 97 (289)
|+.|.-+|+-++..... ...+..|..+|.+|+.++. ...........-.....++...-+.+|.+++-+
T Consensus 104 fE~a~vL~N~aa~~s~~a~~~~~~~~~~~k~A~~~fq~AAg~f~~l~~~~~~~~s~Dl~~~~l~~l~~l~lAqAQe~~~~ 183 (377)
T PF03097_consen 104 FEKACVLFNIAALYSQLAASQNRSTDEGLKEACNYFQRAAGIFQYLRENFKDSPSPDLSPEVLSALSNLMLAQAQECFYE 183 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHHHHHHHHHSSS-SSGGGSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHH---HHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHH
Q 022992 98 AVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVF---FEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEI 174 (289)
Q Consensus 98 A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~---y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 174 (289)
-... +.......++.-...+..|......=..... +.+....+-........+.++...|......+++.+|+..
T Consensus 184 ka~~--~~~~~~liAKLa~~~~~~Y~~a~~~l~~~~~~~~~~~~w~~~~~~K~~~~~A~A~y~~A~~~~~~~~~G~aia~ 261 (377)
T PF03097_consen 184 KAIA--DKKKPSLIAKLAAQASELYDEAHEALQSSPLSESIPKDWRSYVQVKSAYYRALAHYHQALAAEEAKKYGEAIAR 261 (377)
T ss_dssp HHHH--TTG-HHHHHHHHHHHHHHHHHHHHHHTTCHHHHCSHCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHH--ccCchHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHH
Q ss_pred HHHH
Q 022992 175 YEEI 178 (289)
Q Consensus 175 ~~~a 178 (289)
++.+
T Consensus 262 L~~A 265 (377)
T PF03097_consen 262 LRRA 265 (377)
T ss_dssp HHHH
T ss_pred HHHH
No 451
>PRK05685 fliS flagellar protein FliS; Validated
Probab=27.33 E-value=2.7e+02 Score=20.89 Aligned_cols=37 Identities=22% Similarity=0.166 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 022992 29 YEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKL 66 (289)
Q Consensus 29 ~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~ 66 (289)
|+.++.....|-.+ ...|+++++.....+|.++...+
T Consensus 32 ydgai~~l~~A~~a-i~~~~~~~~~~~l~ka~~Ii~eL 68 (132)
T PRK05685 32 YEGALSFLAQAKLA-IEQGDIEAKGEYLSKAINIINGL 68 (132)
T ss_pred HHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHH
Confidence 56666666554333 45688888888888887777644
No 452
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=26.83 E-value=98 Score=15.67 Aligned_cols=18 Identities=28% Similarity=0.521 Sum_probs=14.1
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 022992 126 HNIEQTIVFFEKAADMFQ 143 (289)
Q Consensus 126 g~~~~A~~~y~~A~~~~~ 143 (289)
|+.+.+...|++++..++
T Consensus 1 ~~~~~~r~i~e~~l~~~~ 18 (33)
T smart00386 1 GDIERARKIYERALEKFP 18 (33)
T ss_pred CcHHHHHHHHHHHHHHCC
Confidence 467788888888887766
No 453
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.35 E-value=5.4e+02 Score=24.03 Aligned_cols=129 Identities=11% Similarity=0.044 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCcc-----chHHHHHHHHHHHHHHh----------cCHHHHHHHH
Q 022992 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT-----TSANQCKQKVAQYAAEL----------EQYHKSIEIY 175 (289)
Q Consensus 111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~-----~~~~~~~~~l~~~~~~~----------g~~~~A~~~~ 175 (289)
.+-.+..-|........|++|+.++-.|=+.|..=++. ..-+..-..+.++|..+ .+...|.+.|
T Consensus 162 mglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf 241 (568)
T KOG2561|consen 162 MGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGF 241 (568)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhh
Q ss_pred HHH----HHHHhhccccccchhhHHHHH----HHHHHccCCHHHHHHHHHHHhhcCCCCC-CchHHHHHHHHH
Q 022992 176 EEI----ARQSLNNNLLKYGVKGHLLNA----GICQLCKGDVVAITNALERYQDMDPTFS-GTREYRLLSDIA 239 (289)
Q Consensus 176 ~~a----~~~~~~~~~~~~~~~~~~~~~----~~~~l~~gd~~~A~~~~~~~~~~~~~~~-~~~e~~~l~~l~ 239 (289)
.+. ..+...-.....+....+.++ |.+..++|.-++|-++|+.+.....++. ...+-.++..++
T Consensus 242 ~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elki~d~~lsllv~mG 314 (568)
T KOG2561|consen 242 ERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLELKINDETLSLLVGMG 314 (568)
T ss_pred hhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHeeccchHHHHHHHcC
No 454
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=25.48 E-value=4.9e+02 Score=23.22 Aligned_cols=27 Identities=22% Similarity=0.190 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 022992 152 NQCKQKVAQYAAELEQYHKSIEIYEEI 178 (289)
Q Consensus 152 ~~~~~~l~~~~~~~g~~~~A~~~~~~a 178 (289)
......+..+|..+|-.+.|...|...
T Consensus 217 ~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 217 YQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 356788899999999999999999876
No 455
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=25.23 E-value=90 Score=17.25 Aligned_cols=19 Identities=16% Similarity=0.281 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHHhhcCCCC
Q 022992 208 DVVAITNALERYQDMDPTF 226 (289)
Q Consensus 208 d~~~A~~~~~~~~~~~~~~ 226 (289)
+++.|+..|++++.+.|..
T Consensus 2 E~dRAR~IyeR~v~~hp~~ 20 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPEV 20 (32)
T ss_pred hHHHHHHHHHHHHHhCCCc
Confidence 4688999999998877664
No 456
>PF06301 Lambda_Kil: Bacteriophage lambda Kil protein; InterPro: IPR010444 This family consists of several Bacteriophage lambda Kil protein like sequences. A cessation of division, followed by one or two fairly synchronous cell divisions in Escherichia coli is due to two genetically separable events: a temporary block of cell division and, at the same time, a block to the initiation of new rounds of DNA replication. The cell division block is a result of the transient expression of the lambda kil gene []. The lambda kil gene has been shown to be responsible for premature lysis on the addition of chloramphenicol between 15 and 20 min after thermal induction of a lambda prophage []. Induction of a lambda prophage causes the death of the host cell even in the absence of phage replication and lytic functions due to expression of functions from the lambda p(L) operon. The kil gene causes cell death and filamentation [].
Probab=25.19 E-value=72 Score=18.85 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=20.4
Q ss_pred HHHHcccCHHHHHHHHHhccccCCCchhHH
Q 022992 239 AASMDEEDIAKFTDVVKEFDSMTPLDPWKT 268 (289)
Q Consensus 239 ~~a~~~~d~~~~~~al~~~~~~~~~d~~~~ 268 (289)
..|.-.||...+.+|.+.+.....+ ||++
T Consensus 13 ~IA~flGD~~mw~eA~e~~k~ai~~-pwyR 41 (43)
T PF06301_consen 13 AIARFLGDEKMWSEANEAMKIAIGM-PWYR 41 (43)
T ss_pred HHHHHHccHHHHHHHHHHHHHHhCc-chhc
Confidence 3444578889999998887776544 5654
No 457
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=24.67 E-value=6.6e+02 Score=24.47 Aligned_cols=34 Identities=12% Similarity=0.096 Sum_probs=19.8
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 022992 27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLA 60 (289)
Q Consensus 27 ~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~ 60 (289)
++-+..-+....+|.-....|++++|+..|.-|.
T Consensus 408 ~~~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~ 441 (613)
T PF04097_consen 408 DDEDFLREIIEQAAREAEERGRFEDAILLYHLAE 441 (613)
T ss_dssp SSSHHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 3334555566666666666677766666665544
No 458
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=24.51 E-value=6.6e+02 Score=24.44 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=17.7
Q ss_pred HHHHHHHHHH--HHhcCHHHHHHHHHHH
Q 022992 153 QCKQKVAQYA--AELEQYHKSIEIYEEI 178 (289)
Q Consensus 153 ~~~~~l~~~~--~~~g~~~~A~~~~~~a 178 (289)
..+..+..++ ...|+|+.|++..++.
T Consensus 504 ~~Ll~L~~ff~~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 504 QLLLDLAEFFDLYHAGQYEQALDIIEKL 531 (613)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 3455555554 5779999999988776
No 459
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=24.41 E-value=4.8e+02 Score=23.40 Aligned_cols=52 Identities=23% Similarity=0.307 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 022992 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADM 141 (289)
Q Consensus 87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~ 141 (289)
-.++....+...+.- .-+....+++|.-+|.+....|..+..|..|++|+..
T Consensus 118 p~eei~~~L~~li~~---IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~a 169 (353)
T PF15297_consen 118 PKEEILATLSDLIKN---IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILA 169 (353)
T ss_pred CHHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Confidence 334444444433332 2334567889999999999999999999999999875
No 460
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=23.69 E-value=4.8e+02 Score=22.58 Aligned_cols=63 Identities=14% Similarity=0.141 Sum_probs=36.6
Q ss_pred HHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 022992 74 QAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMF 142 (289)
Q Consensus 74 ~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~ 142 (289)
.++..++..+... +++.+++.+++-+.+-+-... .+..+=..|...|+...|+..|.+.-...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~------~~~~lm~~y~~~g~~~~ai~~y~~l~~~~ 217 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEP------AYLRLMEAYLVNGRQSAAIRAYRQLKKTL 217 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchH------HHHHHHHHHHHcCCchHHHHHHHHHHHHh
Confidence 3555555555444 666676666666555443222 33333344444488888888888777653
No 461
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=22.81 E-value=3.9e+02 Score=21.18 Aligned_cols=32 Identities=13% Similarity=0.207 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 022992 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQ 143 (289)
Q Consensus 112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~ 143 (289)
+..+.+.+.++..+|+.++|..+..++..+|+
T Consensus 144 ~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 144 PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 45788888888888999999999999998888
No 462
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.40 E-value=1.4e+02 Score=21.49 Aligned_cols=34 Identities=24% Similarity=0.372 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q 022992 113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE 146 (289)
Q Consensus 113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~ 146 (289)
.....+|.+|...|+.+.|++.|+.--.+|++.+
T Consensus 73 G~HAhLGlLys~~G~~e~a~~eFetEKalFPES~ 106 (121)
T COG4259 73 GYHAHLGLLYSNSGKDEQAVREFETEKALFPESG 106 (121)
T ss_pred cHHHHHHHHHhhcCChHHHHHHHHHhhhhCccch
Confidence 3566789999999999999999998888888866
No 463
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=21.58 E-value=5.5e+02 Score=22.47 Aligned_cols=121 Identities=7% Similarity=0.089 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---h
Q 022992 49 WDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYE---S 124 (289)
Q Consensus 49 ~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~---~ 124 (289)
.+.-+..|++|++... ++..- -..|.. ++.+. +.++...-.++++...+. ++ ..|...=.... .
T Consensus 47 ~E~klsilerAL~~np--~~~~L-~l~~l~---~~~~~~~~~~l~~~we~~l~~~~~--~~----~LW~~yL~~~q~~~~ 114 (321)
T PF08424_consen 47 AERKLSILERALKHNP--DSERL-LLGYLE---EGEKVWDSEKLAKKWEELLFKNPG--SP----ELWREYLDFRQSNFA 114 (321)
T ss_pred HHHHHHHHHHHHHhCC--CCHHH-HHHHHH---HHHHhCCHHHHHHHHHHHHHHCCC--Ch----HHHHHHHHHHHHHhc
Confidence 3566777888887721 22211 112222 22233 556666666666655332 11 12222222211 1
Q ss_pred cCCHHHHHHHHHHHHHHHhccCcc------------chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992 125 EHNIEQTIVFFEKAADMFQNEEVT------------TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ 181 (289)
Q Consensus 125 ~g~~~~A~~~y~~A~~~~~~~~~~------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 181 (289)
.-.++.....|.+++......... .....++.++..+....|-.+.|+..++-.+..
T Consensus 115 ~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 115 SFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred cCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 245788888898888876643221 334456778888888999999999999988743
No 464
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=21.56 E-value=4.8e+02 Score=21.72 Aligned_cols=61 Identities=16% Similarity=0.194 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC--CHHHHHHHHH
Q 022992 27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT--SSNEAISCLE 96 (289)
Q Consensus 27 ~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~--~~~~A~~~~~ 96 (289)
.+|..|......|+..|. ++..+.++.....+-..+.+.++.+++.++++. ..++-...|.
T Consensus 30 k~Y~KA~~a~~~A~~~y~---------dal~Kige~A~~s~~SkeLG~~L~qi~ev~r~i~~~le~~lK~Fh 92 (226)
T cd07645 30 KNYEKAVNAMVLAGKAYY---------DGVAKIGEIAAVSPVSKELGHVLMEISDVHKKLNDSLEENFKKFH 92 (226)
T ss_pred hHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555554442 133444444444444455666777777777655 4444444433
No 465
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=21.53 E-value=5.8e+02 Score=22.69 Aligned_cols=17 Identities=12% Similarity=0.182 Sum_probs=14.9
Q ss_pred hHhhHHHHHHHHHHhhc
Q 022992 4 QIARAEEFEKKAEKKLN 20 (289)
Q Consensus 4 ~~~~a~~~~~~A~~~~k 20 (289)
+.++|..++++|.-.+.
T Consensus 135 ~~K~A~~~l~~AAG~f~ 151 (346)
T cd09247 135 DFKEAATHLRRAAGVFE 151 (346)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57899999999988886
No 466
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=21.11 E-value=7.8e+02 Score=23.98 Aligned_cols=59 Identities=12% Similarity=0.216 Sum_probs=35.7
Q ss_pred HHhcCHHHHHHHHHHH-HHHHhhcc--ccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022992 163 AELEQYHKSIEIYEEI-ARQSLNNN--LLKYGVKGHLLNAGICQLCKGDVVAITNALERYQD 221 (289)
Q Consensus 163 ~~~g~~~~A~~~~~~a-~~~~~~~~--~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~ 221 (289)
...|+|-+|..++-.. +...+... .+..--...+..+|+|..+.|...+|..++...+.
T Consensus 467 AL~d~~~~ARDllLmShlqe~I~~~D~~tQILyNR~~vQLGLcAFR~G~I~eah~~L~el~~ 528 (595)
T PF05470_consen 467 ALHDRYYEARDLLLMSHLQESIQHSDISTQILYNRAMVQLGLCAFRAGLIKEAHQCLSELCS 528 (595)
T ss_pred HHHhhHHHHHHHHHHhHHHHhhhccCHHHHHHHhHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Confidence 4558888888876544 22211111 00110112344579999999999999999987654
No 467
>TIGR00208 fliS flagellar biosynthetic protein FliS. The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. The member of this family in Vibrio parahaemolyticus is designated FlaJ (creating a synonym for FliS) and was shown essential for flagellin biosynthesis.
Probab=21.10 E-value=3.5e+02 Score=20.02 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 022992 29 YEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKL 66 (289)
Q Consensus 29 ~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~ 66 (289)
|+.++.....|-.+ ...|+++++.....+|..+...+
T Consensus 28 ydg~i~~l~~a~~a-i~~~d~~~~~~~i~ka~~Ii~eL 64 (124)
T TIGR00208 28 YNGCLKFIRLAAQA-IENDDIERKNENLIKAQNIIQEL 64 (124)
T ss_pred HHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHH
Confidence 55666555554443 34578888888888877776544
No 468
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=20.77 E-value=1.9e+02 Score=25.97 Aligned_cols=99 Identities=13% Similarity=0.002 Sum_probs=51.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcC--CH-----------HHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHh
Q 022992 39 AANSFKLAKSWDKAGATYVKLANCHLKLE--SK-----------HEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCD 104 (289)
Q Consensus 39 A~~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~-----------~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~ 104 (289)
-++-....++++.|..-|.++.......- +. ...-....+++.+-.+. ++..|+.....++.
T Consensus 228 ~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~---- 303 (372)
T KOG0546|consen 228 IGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR---- 303 (372)
T ss_pred cchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccc----
Confidence 34445555566666666666555543110 00 01112233344443333 44445444443333
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 022992 105 IGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ 143 (289)
Q Consensus 105 ~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~ 143 (289)
+....+..+...+..+....++++|++.+..|....+
T Consensus 304 --~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p 340 (372)
T KOG0546|consen 304 --DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAP 340 (372)
T ss_pred --cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCc
Confidence 2334556677777777777788888888887766544
No 469
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=20.56 E-value=6.3e+02 Score=22.71 Aligned_cols=17 Identities=12% Similarity=-0.115 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHh
Q 022992 49 WDKAGATYVKLANCHLK 65 (289)
Q Consensus 49 ~~~A~~~~~~a~~~~~~ 65 (289)
...|..+|++|+-++.-
T Consensus 139 lK~A~~~fq~AAG~F~~ 155 (361)
T cd09239 139 MKVACTHFQCAAWAFAY 155 (361)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566666666666653
No 470
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=20.48 E-value=3.4e+02 Score=26.04 Aligned_cols=59 Identities=10% Similarity=0.060 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhc---CCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 022992 114 YYKEIAELYESE---HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI 178 (289)
Q Consensus 114 ~l~~la~~~~~~---g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 178 (289)
+|.+-+.++... |+.-.|+.-...|+++.+. .-.++..++.++..++++.+|+.+...+
T Consensus 410 ~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s------~~kah~~la~aL~el~r~~eal~~~~al 471 (758)
T KOG1310|consen 410 LLENRAAALMKRKWRGDSYLALRDCHVALRLNPS------IQKAHFRLARALNELTRYLEALSCHWAL 471 (758)
T ss_pred HHHhHHHHHHhhhccccHHHHHHhHHhhccCChH------HHHHHHHHHHHHHHHhhHHHhhhhHHHH
Confidence 444444444332 6777777777777766432 2346788999999999999999887655
No 471
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=20.43 E-value=1.3e+02 Score=26.91 Aligned_cols=110 Identities=9% Similarity=0.041 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC-------------ccchHHHHHHHHHHHHHHhcCHHHHHHHH
Q 022992 109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE-------------VTTSANQCKQKVAQYAAELEQYHKSIEIY 175 (289)
Q Consensus 109 ~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~-------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 175 (289)
........+.|.-....++++.|..-|.++........ -......+..+++.+-...+.+..|+..-
T Consensus 219 ~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~ 298 (372)
T KOG0546|consen 219 LEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRT 298 (372)
T ss_pred hhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecc
Confidence 34445566677777777889999998888887765210 01223345667778888888888887766
Q ss_pred HHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992 176 EEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT 225 (289)
Q Consensus 176 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~ 225 (289)
..++.. .......+.+.+..+...-++++|.+-+..+....|.
T Consensus 299 ~~~~~~-------~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~ 341 (372)
T KOG0546|consen 299 NEALRD-------ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPN 341 (372)
T ss_pred cccccc-------ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcc
Confidence 555421 1122234566777777778888888888777665544
No 472
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=20.17 E-value=8.2e+02 Score=24.90 Aligned_cols=73 Identities=18% Similarity=0.057 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCH-----------HHHHHHHHHHHHHHccC-CHHHHHHH
Q 022992 27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESK-----------HEAAQAYVDAAHCYKKT-SSNEAISC 94 (289)
Q Consensus 27 ~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-----------~~aa~~~~~~a~~~~~~-~~~~A~~~ 94 (289)
++|++|......-.++.+..-+|-..-+.|..++.+|+--|.. ......+..++.+|... .+.+|+..
T Consensus 878 ~~ye~ALghl~E~~n~~~Ev~~yi~~hdly~~~l~lyrYd~e~Qk~~~nifa~~l~~n~~~~~aa~aye~~gK~~Ea~ga 957 (1243)
T COG5290 878 SIYESALGHLNEDLNVIREVMKYICRHDLYDFLLLLYRYDGELQKFKINIFAGNLVDNLYHISAAKAYEVEGKYIEAHGA 957 (1243)
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHhccchHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 6788888888877777776666666666677777776533321 11223344455555444 66677776
Q ss_pred HHHHH
Q 022992 95 LEQAV 99 (289)
Q Consensus 95 ~~~A~ 99 (289)
|+.|.
T Consensus 958 y~sA~ 962 (1243)
T COG5290 958 YDSAL 962 (1243)
T ss_pred HHHHH
Confidence 66654
No 473
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=20.16 E-value=1.6e+02 Score=22.84 Aligned_cols=30 Identities=17% Similarity=0.307 Sum_probs=23.3
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHHHhc
Q 022992 115 YKEIAELYESEH-NIEQTIVFFEKAADMFQN 144 (289)
Q Consensus 115 l~~la~~~~~~g-~~~~A~~~y~~A~~~~~~ 144 (289)
-..+|..+...| +.++++.+|-+|+.+++.
T Consensus 93 eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~q 123 (148)
T TIGR00985 93 EVQLGEELMAQGTNVDEGAVHFYNALKVYPQ 123 (148)
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHhCCC
Confidence 346677777777 888888888888888764
No 474
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=20.06 E-value=3.6e+02 Score=19.72 Aligned_cols=37 Identities=14% Similarity=0.197 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 022992 29 YEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKL 66 (289)
Q Consensus 29 ~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~ 66 (289)
|+.++....+|.. ....|+++.+.....+|.++...+
T Consensus 26 yd~ai~~l~~a~~-a~~~~~~~~~~~~l~ka~~Ii~~L 62 (122)
T PF02561_consen 26 YDGAIEFLKQAKE-AIEQGDIEEKNEALQKAQDIITEL 62 (122)
T ss_dssp HHHHHHHHHHHHH-HHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHHH
Confidence 4555555555554 346677888888888887776543
Done!