Query 022992
Match_columns 289
No_of_seqs 178 out of 1674
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 14:31:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022992.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022992hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qqe_A Vesicular transport pro 100.0 3.8E-41 1.3E-45 291.3 30.1 282 5-289 1-292 (292)
2 2ifu_A Gamma-SNAP; membrane fu 100.0 3.6E-36 1.2E-40 261.9 32.3 270 1-274 2-274 (307)
3 1qqe_A Vesicular transport pro 99.9 1.8E-20 6.1E-25 161.5 24.5 214 3-222 31-269 (292)
4 3ulq_A Response regulator aspa 99.9 6.6E-20 2.3E-24 163.3 27.4 238 39-278 109-349 (383)
5 3q15_A PSP28, response regulat 99.9 2.7E-19 9.1E-24 159.3 29.8 237 39-278 107-346 (378)
6 3sf4_A G-protein-signaling mod 99.9 6.1E-19 2.1E-23 156.6 29.1 183 40-223 54-257 (406)
7 4a1s_A PINS, partner of inscut 99.9 8.5E-19 2.9E-23 156.7 29.1 249 6-260 46-336 (411)
8 3ulq_A Response regulator aspa 99.9 3.3E-18 1.1E-22 152.3 32.2 245 6-262 120-374 (383)
9 3sf4_A G-protein-signaling mod 99.9 1.4E-18 4.8E-23 154.3 29.7 274 5-280 25-359 (406)
10 3ro2_A PINS homolog, G-protein 99.8 1.9E-18 6.4E-23 148.8 28.9 228 33-261 43-297 (338)
11 2ifu_A Gamma-SNAP; membrane fu 99.8 1.4E-18 4.9E-23 150.6 25.8 206 5-214 32-253 (307)
12 3ro2_A PINS homolog, G-protein 99.8 2.9E-18 1E-22 147.6 27.3 243 5-248 21-320 (338)
13 4a1s_A PINS, partner of inscut 99.8 2.9E-18 9.9E-23 153.2 27.2 256 5-261 64-377 (411)
14 3q15_A PSP28, response regulat 99.8 5.5E-18 1.9E-22 150.7 28.0 240 6-258 118-367 (378)
15 3edt_B KLC 2, kinesin light ch 99.8 2.8E-17 9.5E-22 138.4 25.5 175 5-181 17-198 (283)
16 3nf1_A KLC 1, kinesin light ch 99.8 1.5E-16 5.1E-21 136.0 25.7 218 5-224 43-309 (311)
17 4b4t_Q 26S proteasome regulato 99.8 3.8E-16 1.3E-20 140.5 29.0 243 36-278 58-342 (434)
18 3nf1_A KLC 1, kinesin light ch 99.8 2.5E-16 8.5E-21 134.7 24.7 197 26-222 20-224 (311)
19 3ro3_A PINS homolog, G-protein 99.8 4.2E-16 1.4E-20 119.9 23.0 155 27-181 3-158 (164)
20 3uq3_A Heat shock protein STI1 99.8 3.9E-16 1.3E-20 129.8 23.9 227 32-278 4-257 (258)
21 3uq3_A Heat shock protein STI1 99.8 3E-16 1E-20 130.5 23.2 204 6-227 3-241 (258)
22 3gw4_A Uncharacterized protein 99.7 5.9E-16 2E-20 124.6 23.0 151 31-181 24-176 (203)
23 2qfc_A PLCR protein; TPR, HTH, 99.7 1.5E-16 5E-21 136.7 19.0 194 34-228 76-272 (293)
24 3u3w_A Transcriptional activat 99.7 3.3E-16 1.1E-20 134.5 20.0 195 32-227 74-271 (293)
25 3vtx_A MAMA; tetratricopeptide 99.7 3.4E-16 1.2E-20 124.6 17.3 169 32-225 4-173 (184)
26 3gw4_A Uncharacterized protein 99.7 1.1E-15 3.6E-20 123.0 20.2 176 45-227 4-181 (203)
27 3ro3_A PINS homolog, G-protein 99.7 1.4E-15 4.7E-20 117.0 20.0 159 66-225 2-161 (164)
28 2pl2_A Hypothetical conserved 99.7 2.8E-16 9.6E-21 129.2 17.0 193 35-260 7-211 (217)
29 4eqf_A PEX5-related protein; a 99.7 1.3E-16 4.5E-21 140.4 16.1 212 27-260 79-314 (365)
30 1hz4_A MALT regulatory protein 99.7 4.3E-14 1.5E-18 124.8 32.1 225 35-261 55-287 (373)
31 3hym_B Cell division cycle pro 99.7 1.9E-15 6.5E-20 130.2 22.0 248 5-278 38-314 (330)
32 3edt_B KLC 2, kinesin light ch 99.7 4E-15 1.4E-19 125.0 23.4 233 45-279 13-263 (283)
33 1w3b_A UDP-N-acetylglucosamine 99.7 8E-16 2.7E-20 136.6 19.7 225 27-278 115-383 (388)
34 1w3b_A UDP-N-acetylglucosamine 99.7 1E-15 3.4E-20 136.0 19.8 192 27-242 149-383 (388)
35 4eqf_A PEX5-related protein; a 99.7 7.1E-16 2.4E-20 135.7 18.3 235 5-256 81-352 (365)
36 3u3w_A Transcriptional activat 99.7 2.1E-15 7.3E-20 129.5 19.8 149 33-181 115-266 (293)
37 2pl2_A Hypothetical conserved 99.7 1.2E-15 4E-20 125.5 16.9 179 10-219 7-211 (217)
38 1hz4_A MALT regulatory protein 99.7 9.7E-14 3.3E-18 122.6 29.9 225 33-260 14-244 (373)
39 2qfc_A PLCR protein; TPR, HTH, 99.7 4.1E-15 1.4E-19 127.7 19.9 168 9-181 76-266 (293)
40 4gyw_A UDP-N-acetylglucosamine 99.7 1E-15 3.4E-20 147.1 16.3 166 33-223 9-175 (723)
41 1fch_A Peroxisomal targeting s 99.7 7.1E-15 2.4E-19 128.9 19.4 180 27-225 78-317 (368)
42 1fch_A Peroxisomal targeting s 99.7 4.5E-15 1.5E-19 130.2 17.6 199 25-247 37-301 (368)
43 3hym_B Cell division cycle pro 99.7 7.8E-15 2.7E-19 126.3 18.6 223 5-251 72-325 (330)
44 3u4t_A TPR repeat-containing p 99.6 1.3E-15 4.3E-20 128.3 12.8 239 10-278 5-265 (272)
45 2h6f_A Protein farnesyltransfe 99.6 3.4E-15 1.2E-19 133.4 16.1 223 27-280 111-365 (382)
46 2ho1_A Type 4 fimbrial biogene 99.6 7.2E-14 2.5E-18 116.2 22.4 212 27-266 31-244 (252)
47 3ieg_A DNAJ homolog subfamily 99.6 9.7E-14 3.3E-18 120.5 23.7 209 5-225 19-266 (359)
48 3ieg_A DNAJ homolog subfamily 99.6 7.9E-14 2.7E-18 121.1 22.6 247 5-274 53-346 (359)
49 2vq2_A PILW, putative fimbrial 99.6 1.3E-13 4.6E-18 111.9 22.5 207 32-266 7-217 (225)
50 1ouv_A Conserved hypothetical 99.6 5.5E-14 1.9E-18 118.8 20.6 201 27-267 20-255 (273)
51 2h6f_A Protein farnesyltransfe 99.6 5.8E-15 2E-19 131.8 15.1 214 33-278 97-319 (382)
52 4abn_A Tetratricopeptide repea 99.6 2.6E-14 9E-19 131.2 18.8 197 35-261 104-319 (474)
53 2xpi_A Anaphase-promoting comp 99.6 4.5E-14 1.5E-18 132.0 20.6 227 27-279 353-595 (597)
54 3cv0_A Peroxisome targeting si 99.6 2.5E-13 8.5E-18 116.7 23.4 218 7-248 20-303 (327)
55 2y4t_A DNAJ homolog subfamily 99.6 1.9E-13 6.7E-18 123.1 23.4 134 80-225 150-289 (450)
56 2y4t_A DNAJ homolog subfamily 99.6 2.4E-13 8.2E-18 122.5 23.9 248 5-275 76-370 (450)
57 4i17_A Hypothetical protein; T 99.6 1.7E-14 5.9E-19 118.7 14.9 160 34-209 8-169 (228)
58 2q7f_A YRRB protein; TPR, prot 99.6 1.6E-14 5.4E-19 119.2 14.7 161 40-225 64-225 (243)
59 3fp2_A TPR repeat-containing p 99.6 1.4E-13 4.9E-18 126.7 21.6 204 5-227 259-496 (537)
60 3qky_A Outer membrane assembly 99.6 1.2E-13 4.1E-18 116.2 19.1 183 35-227 17-229 (261)
61 2ho1_A Type 4 fimbrial biogene 99.6 3.9E-13 1.3E-17 111.7 21.3 176 27-225 51-241 (252)
62 3fp2_A TPR repeat-containing p 99.6 1.9E-13 6.3E-18 125.9 20.1 249 5-279 211-473 (537)
63 4gyw_A UDP-N-acetylglucosamine 99.6 3.9E-14 1.3E-18 136.1 15.9 152 71-246 7-160 (723)
64 4b4t_Q 26S proteasome regulato 99.6 7.7E-13 2.6E-17 118.8 22.7 218 46-264 17-253 (434)
65 4i17_A Hypothetical protein; T 99.6 1.2E-13 4.1E-18 113.6 15.6 185 74-274 8-220 (228)
66 2q7f_A YRRB protein; TPR, prot 99.6 5.6E-14 1.9E-18 115.8 13.4 196 31-256 21-218 (243)
67 2xpi_A Anaphase-promoting comp 99.5 1.9E-12 6.6E-17 120.8 25.3 224 27-278 319-560 (597)
68 3u4t_A TPR repeat-containing p 99.5 2.2E-13 7.4E-18 114.5 16.9 204 5-227 19-255 (272)
69 3vtx_A MAMA; tetratricopeptide 99.5 1.4E-13 4.9E-18 109.2 14.6 170 72-268 4-175 (184)
70 2vq2_A PILW, putative fimbrial 99.5 2.9E-12 9.8E-17 104.0 22.6 176 27-225 22-214 (225)
71 3as5_A MAMA; tetratricopeptide 99.5 1.1E-13 3.8E-18 108.7 13.5 173 30-227 5-178 (186)
72 3qky_A Outer membrane assembly 99.5 1.1E-12 3.8E-17 110.2 20.0 167 6-183 13-226 (261)
73 1ouv_A Conserved hypothetical 99.5 1.5E-12 5E-17 110.0 20.5 169 34-242 7-192 (273)
74 2yhc_A BAMD, UPF0169 lipoprote 99.5 1.9E-12 6.4E-17 106.7 20.3 180 36-225 7-216 (225)
75 2gw1_A Mitochondrial precursor 99.5 1.2E-12 4E-17 119.6 19.7 222 5-250 205-468 (514)
76 2gw1_A Mitochondrial precursor 99.5 4.6E-12 1.6E-16 115.7 23.6 202 5-225 3-302 (514)
77 3urz_A Uncharacterized protein 99.5 8E-13 2.7E-17 107.7 16.6 168 38-225 9-189 (208)
78 3cv0_A Peroxisome targeting si 99.5 2.1E-12 7.2E-17 110.8 19.5 198 27-248 15-257 (327)
79 4g1t_A Interferon-induced prot 99.5 1.2E-13 4.3E-18 125.4 12.0 197 33-247 51-263 (472)
80 1xnf_A Lipoprotein NLPI; TPR, 99.5 2.7E-11 9.3E-16 101.4 22.9 211 5-249 21-233 (275)
81 4gcn_A Protein STI-1; structur 99.5 1.9E-12 6.6E-17 97.1 14.1 111 108-224 4-114 (127)
82 2pzi_A Probable serine/threoni 99.4 9.2E-13 3.2E-17 126.1 14.7 200 44-268 402-610 (681)
83 4ga2_A E3 SUMO-protein ligase 99.4 2.1E-13 7.2E-18 105.4 7.5 126 39-182 3-130 (150)
84 4gcn_A Protein STI-1; structur 99.4 1.9E-12 6.5E-17 97.1 12.1 106 70-181 5-112 (127)
85 4ga2_A E3 SUMO-protein ligase 99.4 1.3E-12 4.4E-17 101.0 10.8 131 78-227 2-134 (150)
86 1xnf_A Lipoprotein NLPI; TPR, 99.4 1.8E-11 6.2E-16 102.5 18.7 159 46-226 18-177 (275)
87 4g1t_A Interferon-induced prot 99.4 1.6E-12 5.3E-17 118.1 12.9 155 65-226 43-208 (472)
88 3as5_A MAMA; tetratricopeptide 99.4 9.6E-12 3.3E-16 97.5 15.8 132 35-184 44-176 (186)
89 4abn_A Tetratricopeptide repea 99.4 8.1E-12 2.8E-16 114.6 17.6 195 53-272 81-296 (474)
90 1xi4_A Clathrin heavy chain; a 99.4 3.1E-11 1.1E-15 120.2 22.4 229 5-265 1065-1347(1630)
91 3n71_A Histone lysine methyltr 99.4 2.6E-11 9E-16 111.3 19.2 144 41-184 317-467 (490)
92 4gco_A Protein STI-1; structur 99.4 1.8E-11 6.3E-16 91.6 14.5 105 110-227 11-115 (126)
93 2pzi_A Probable serine/threoni 99.4 2E-11 6.9E-16 116.9 17.8 158 40-223 440-603 (681)
94 3mkr_A Coatomer subunit epsilo 99.4 9.1E-11 3.1E-15 100.7 19.7 201 35-270 67-274 (291)
95 2yhc_A BAMD, UPF0169 lipoprote 99.4 6.4E-11 2.2E-15 97.4 17.9 162 8-180 4-212 (225)
96 3mkr_A Coatomer subunit epsilo 99.3 5.2E-11 1.8E-15 102.2 17.3 192 27-258 79-289 (291)
97 2vsy_A XCC0866; transferase, g 99.3 1.3E-11 4.3E-16 115.5 13.5 155 47-226 3-161 (568)
98 4gco_A Protein STI-1; structur 99.3 2.9E-11 9.8E-16 90.6 12.6 100 71-182 11-111 (126)
99 3rjv_A Putative SEL1 repeat pr 99.3 1.4E-10 4.6E-15 94.7 17.4 176 7-222 4-197 (212)
100 1hh8_A P67PHOX, NCF-2, neutrop 99.3 5.5E-11 1.9E-15 96.2 14.9 139 73-226 6-154 (213)
101 2xm6_A Protein corresponding t 99.3 8.2E-10 2.8E-14 101.3 24.1 163 26-221 56-251 (490)
102 2hr2_A Hypothetical protein; a 99.3 8.6E-11 2.9E-15 91.0 14.4 115 72-186 10-136 (159)
103 2xm6_A Protein corresponding t 99.3 2.6E-10 9E-15 104.6 20.3 158 75-264 257-433 (490)
104 1hh8_A P67PHOX, NCF-2, neutrop 99.3 3.2E-11 1.1E-15 97.6 12.5 135 30-180 4-149 (213)
105 3urz_A Uncharacterized protein 99.3 2.6E-10 8.9E-15 92.6 16.9 179 75-274 6-199 (208)
106 3gyz_A Chaperone protein IPGC; 99.3 1.1E-10 3.6E-15 90.4 13.1 103 110-225 34-136 (151)
107 2hr2_A Hypothetical protein; a 99.2 5.9E-10 2E-14 86.3 16.9 113 35-147 13-137 (159)
108 2fo7_A Synthetic consensus TPR 99.2 1.7E-10 5.9E-15 85.1 13.2 131 75-224 3-134 (136)
109 3gyz_A Chaperone protein IPGC; 99.2 5.5E-11 1.9E-15 92.1 10.6 101 70-182 33-134 (151)
110 1a17_A Serine/threonine protei 99.2 2.1E-10 7.3E-15 88.5 13.9 134 71-221 11-145 (166)
111 3rjv_A Putative SEL1 repeat pr 99.2 2.3E-10 7.9E-15 93.3 14.0 189 50-274 3-209 (212)
112 1a17_A Serine/threonine protei 99.2 4.3E-10 1.5E-14 86.7 14.6 135 30-180 10-145 (166)
113 3n71_A Histone lysine methyltr 99.2 6.5E-10 2.2E-14 102.1 17.8 138 84-221 321-463 (490)
114 1p5q_A FKBP52, FK506-binding p 99.2 2.9E-10 9.8E-15 99.6 14.7 136 32-179 146-292 (336)
115 2ond_A Cleavage stimulation fa 99.2 1.8E-09 6.2E-14 93.0 19.4 188 50-262 81-272 (308)
116 2fo7_A Synthetic consensus TPR 99.2 5.2E-10 1.8E-14 82.5 13.5 129 35-181 3-132 (136)
117 2ond_A Cleavage stimulation fa 99.2 3.8E-09 1.3E-13 90.9 20.9 178 30-227 81-275 (308)
118 3upv_A Heat shock protein STI1 99.2 3.3E-10 1.1E-14 84.0 12.1 103 111-226 3-105 (126)
119 1p5q_A FKBP52, FK506-binding p 99.2 6.4E-10 2.2E-14 97.3 15.6 155 46-219 126-291 (336)
120 2r5s_A Uncharacterized protein 99.2 1.1E-10 3.6E-15 92.2 9.6 162 36-221 9-172 (176)
121 3qou_A Protein YBBN; thioredox 99.2 2.1E-10 7.3E-15 98.1 12.2 163 36-221 120-283 (287)
122 2vsy_A XCC0866; transferase, g 99.2 2.6E-10 9E-15 106.5 13.8 131 34-182 24-158 (568)
123 3upv_A Heat shock protein STI1 99.2 4.6E-10 1.6E-14 83.2 12.5 94 75-180 6-100 (126)
124 2vgx_A Chaperone SYCD; alterna 99.2 9.3E-11 3.2E-15 90.2 8.3 102 71-184 19-121 (148)
125 3rkv_A Putative peptidylprolyl 99.1 5.8E-10 2E-14 86.6 12.7 111 109-226 8-130 (162)
126 1xi4_A Clathrin heavy chain; a 99.1 3.9E-09 1.3E-13 105.5 20.9 164 27-221 1063-1249(1630)
127 3sz7_A HSC70 cochaperone (SGT) 99.1 1.1E-09 3.7E-14 85.2 13.4 103 111-226 10-112 (164)
128 3rkv_A Putative peptidylprolyl 99.1 8.7E-10 3E-14 85.6 12.7 104 32-141 10-126 (162)
129 1b89_A Protein (clathrin heavy 99.1 3.8E-10 1.3E-14 101.2 11.7 198 27-265 46-274 (449)
130 2vgx_A Chaperone SYCD; alterna 99.1 2E-09 6.9E-14 82.7 14.2 105 110-227 19-123 (148)
131 3sz7_A HSC70 cochaperone (SGT) 99.1 7.2E-10 2.5E-14 86.2 11.0 102 70-183 8-110 (164)
132 2r5s_A Uncharacterized protein 99.1 1.9E-10 6.4E-15 90.8 7.6 149 10-180 8-172 (176)
133 2fbn_A 70 kDa peptidylprolyl i 99.1 4.9E-10 1.7E-14 90.0 10.0 130 31-172 36-176 (198)
134 2xcb_A PCRH, regulatory protei 99.1 3.3E-09 1.1E-13 80.5 13.7 102 71-184 16-118 (142)
135 2fbn_A 70 kDa peptidylprolyl i 99.1 1.3E-09 4.5E-14 87.4 11.8 129 71-212 36-175 (198)
136 3e4b_A ALGK; tetratricopeptide 99.1 7.7E-09 2.6E-13 94.1 17.9 203 39-282 182-407 (452)
137 2xcb_A PCRH, regulatory protei 99.1 5.1E-09 1.7E-13 79.5 13.9 105 110-227 16-120 (142)
138 2lni_A Stress-induced-phosphop 99.1 3.3E-09 1.1E-13 78.4 12.6 117 72-207 15-132 (133)
139 1elr_A TPR2A-domain of HOP; HO 99.0 5.5E-09 1.9E-13 76.8 13.7 108 111-224 3-110 (131)
140 1ihg_A Cyclophilin 40; ppiase 99.0 2E-09 7E-14 95.5 13.1 129 33-173 223-362 (370)
141 2vyi_A SGTA protein; chaperone 99.0 1E-08 3.6E-13 75.1 14.9 121 69-208 8-129 (131)
142 1kt0_A FKBP51, 51 kDa FK506-bi 99.0 4.7E-09 1.6E-13 95.7 15.3 131 32-174 267-407 (457)
143 1elr_A TPR2A-domain of HOP; HO 99.0 1.3E-08 4.4E-13 74.7 14.6 121 32-165 3-125 (131)
144 2vyi_A SGTA protein; chaperone 99.0 4.1E-09 1.4E-13 77.3 11.9 121 30-168 9-130 (131)
145 2e2e_A Formate-dependent nitri 99.0 1.4E-09 4.9E-14 85.4 9.8 121 87-226 25-148 (177)
146 2lni_A Stress-induced-phosphop 99.0 4.1E-09 1.4E-13 77.8 11.6 118 32-167 15-133 (133)
147 1hxi_A PEX5, peroxisome target 99.0 3.3E-09 1.1E-13 78.6 10.9 100 114-226 19-118 (121)
148 1wao_1 Serine/threonine protei 99.0 6.6E-10 2.2E-14 102.0 8.5 136 73-227 6-155 (477)
149 1ihg_A Cyclophilin 40; ppiase 99.0 6.9E-09 2.3E-13 92.0 14.7 129 72-213 222-361 (370)
150 1kt0_A FKBP51, 51 kDa FK506-bi 99.0 5.5E-09 1.9E-13 95.3 14.5 150 47-215 248-407 (457)
151 3qou_A Protein YBBN; thioredox 99.0 6.4E-09 2.2E-13 88.8 13.7 148 73-242 117-265 (287)
152 3q49_B STIP1 homology and U bo 99.0 7.5E-09 2.6E-13 77.3 12.4 101 112-225 9-109 (137)
153 2c2l_A CHIP, carboxy terminus 99.0 3.4E-09 1.2E-13 90.3 11.6 100 34-145 5-105 (281)
154 3q49_B STIP1 homology and U bo 99.0 5.3E-09 1.8E-13 78.1 10.9 100 73-184 9-109 (137)
155 1na0_A Designed protein CTPR3; 99.0 1E-08 3.5E-13 74.5 12.0 99 71-181 7-106 (125)
156 2e2e_A Formate-dependent nitri 99.0 1.5E-09 5E-14 85.3 7.6 120 45-182 22-145 (177)
157 3qww_A SET and MYND domain-con 98.9 1.2E-08 4E-13 92.3 14.1 101 45-145 310-415 (433)
158 1hxi_A PEX5, peroxisome target 98.9 4.1E-09 1.4E-13 78.0 9.3 93 76-180 20-113 (121)
159 2xev_A YBGF; tetratricopeptide 98.9 1.5E-08 5E-13 74.9 12.3 105 114-225 4-108 (129)
160 1elw_A TPR1-domain of HOP; HOP 98.9 4.3E-08 1.5E-12 70.4 14.3 102 112-226 4-105 (118)
161 3qwp_A SET and MYND domain-con 98.9 1.6E-08 5.4E-13 91.4 14.2 125 42-166 296-427 (429)
162 3e4b_A ALGK; tetratricopeptide 98.9 9E-08 3.1E-12 87.0 19.4 159 28-222 194-387 (452)
163 2c2l_A CHIP, carboxy terminus 98.9 3.7E-09 1.3E-13 90.0 9.4 89 7-106 3-106 (281)
164 3qww_A SET and MYND domain-con 98.9 2.5E-08 8.5E-13 90.1 14.7 96 87-182 313-412 (433)
165 2ooe_A Cleavage stimulation fa 98.9 8.4E-08 2.9E-12 88.7 18.7 187 50-265 255-459 (530)
166 2ooe_A Cleavage stimulation fa 98.9 6.2E-08 2.1E-12 89.6 17.7 189 46-259 292-491 (530)
167 2xev_A YBGF; tetratricopeptide 98.9 3.3E-08 1.1E-12 72.9 12.5 101 76-182 5-106 (129)
168 2kck_A TPR repeat; tetratricop 98.9 1.2E-08 4.1E-13 72.8 9.7 103 113-226 7-110 (112)
169 2if4_A ATFKBP42; FKBP-like, al 98.9 2.3E-09 7.8E-14 93.9 6.9 141 73-226 179-332 (338)
170 1na0_A Designed protein CTPR3; 98.9 3E-08 1E-12 71.9 12.0 117 32-166 8-125 (125)
171 3qwp_A SET and MYND domain-con 98.9 4E-08 1.4E-12 88.8 14.5 108 75-182 290-401 (429)
172 2l6j_A TPR repeat-containing p 98.9 1.8E-09 6.2E-14 77.5 4.5 99 73-177 4-103 (111)
173 1elw_A TPR1-domain of HOP; HOP 98.9 4.1E-08 1.4E-12 70.5 11.8 96 73-180 4-100 (118)
174 3k9i_A BH0479 protein; putativ 98.8 6.1E-09 2.1E-13 76.3 7.2 87 87-182 5-91 (117)
175 1wao_1 Serine/threonine protei 98.8 1.6E-09 5.4E-14 99.4 4.6 119 40-176 13-134 (477)
176 2dba_A Smooth muscle cell asso 98.8 7.2E-08 2.5E-12 72.5 12.5 106 111-226 27-132 (148)
177 2if4_A ATFKBP42; FKBP-like, al 98.8 6.5E-09 2.2E-13 91.0 7.4 138 32-181 178-328 (338)
178 2dba_A Smooth muscle cell asso 98.8 1.3E-07 4.3E-12 71.1 12.9 100 73-181 28-128 (148)
179 2kck_A TPR repeat; tetratricop 98.8 5E-09 1.7E-13 74.8 4.3 95 75-179 8-104 (112)
180 1klx_A Cysteine rich protein B 98.8 8E-08 2.7E-12 72.8 11.3 108 47-180 9-125 (138)
181 4f3v_A ESX-1 secretion system 98.8 2.4E-08 8.3E-13 84.6 9.2 131 80-225 109-240 (282)
182 1b89_A Protein (clathrin heavy 98.7 7.7E-09 2.6E-13 92.8 5.7 191 37-275 36-248 (449)
183 3txn_A 26S proteasome regulato 98.7 4.4E-05 1.5E-09 67.6 29.8 245 36-281 22-305 (394)
184 1klx_A Cysteine rich protein B 98.7 2.5E-07 8.6E-12 70.0 12.3 109 87-222 10-126 (138)
185 3k9i_A BH0479 protein; putativ 98.7 4E-08 1.4E-12 71.8 6.9 91 46-145 3-94 (117)
186 2l6j_A TPR repeat-containing p 98.7 2E-08 7E-13 71.9 4.7 96 112-214 4-99 (111)
187 3lpz_A GET4 (YOR164C homolog); 98.6 6.4E-05 2.2E-09 64.8 26.4 241 9-277 13-291 (336)
188 1zu2_A Mitochondrial import re 98.6 4E-08 1.4E-12 75.8 4.8 89 45-145 14-124 (158)
189 4f3v_A ESX-1 secretion system 98.6 5.3E-07 1.8E-11 76.4 11.9 134 34-181 103-237 (282)
190 2wpv_A GET4, UPF0363 protein Y 98.6 2.8E-05 9.4E-10 66.7 22.4 240 9-277 14-287 (312)
191 1zu2_A Mitochondrial import re 98.6 8.9E-08 3E-12 73.9 6.1 85 87-183 17-122 (158)
192 1na3_A Designed protein CTPR2; 98.6 7.5E-07 2.6E-11 61.1 10.4 84 110-206 7-90 (91)
193 2kat_A Uncharacterized protein 98.5 1.6E-07 5.5E-12 68.1 6.5 82 89-182 2-83 (115)
194 1na3_A Designed protein CTPR2; 98.5 4E-07 1.4E-11 62.5 7.9 84 71-166 7-91 (91)
195 3dra_A Protein farnesyltransfe 98.5 6.8E-06 2.3E-10 70.7 16.0 226 30-279 50-304 (306)
196 3ma5_A Tetratricopeptide repea 98.4 1.3E-06 4.3E-11 61.9 9.1 64 75-144 9-73 (100)
197 3ma5_A Tetratricopeptide repea 98.4 1.7E-06 5.8E-11 61.3 9.6 65 112-182 7-71 (100)
198 2kat_A Uncharacterized protein 98.4 8.8E-07 3E-11 64.1 7.9 85 51-147 3-88 (115)
199 2v5f_A Prolyl 4-hydroxylase su 98.2 2E-05 6.8E-10 56.3 10.3 70 113-182 6-76 (104)
200 3dss_A Geranylgeranyl transfer 98.1 0.00023 7.7E-09 61.7 18.4 196 49-277 90-318 (331)
201 3mv2_B Coatomer subunit epsilo 98.1 0.0001 3.5E-09 63.2 15.3 196 37-258 104-307 (310)
202 3dra_A Protein farnesyltransfe 98.1 0.00075 2.6E-08 57.9 20.3 174 26-227 29-220 (306)
203 2kc7_A BFR218_protein; tetratr 98.0 6.2E-06 2.1E-10 57.6 5.4 61 116-182 4-65 (99)
204 1dce_A Protein (RAB geranylger 98.0 7.2E-05 2.5E-09 69.9 13.1 158 45-227 40-226 (567)
205 4e6h_A MRNA 3'-END-processing 98.0 0.0018 6.3E-08 61.6 22.2 203 41-264 351-574 (679)
206 3mv2_B Coatomer subunit epsilo 97.9 0.00033 1.1E-08 60.0 15.2 178 76-269 103-291 (310)
207 3dss_A Geranylgeranyl transfer 97.9 0.00037 1.3E-08 60.4 15.6 212 44-282 40-289 (331)
208 3ffl_A Anaphase-promoting comp 97.9 0.00062 2.1E-08 52.3 14.7 103 76-178 24-148 (167)
209 2kc7_A BFR218_protein; tetratr 97.9 6.8E-05 2.3E-09 52.1 8.8 88 156-265 4-92 (99)
210 4b4t_P 26S proteasome regulato 97.9 0.0027 9.2E-08 57.3 21.4 204 8-219 17-244 (445)
211 1dce_A Protein (RAB geranylger 97.9 0.00018 6E-09 67.2 13.3 176 87-283 44-241 (567)
212 3ly7_A Transcriptional activat 97.8 0.0002 6.9E-09 62.6 12.3 142 27-181 191-339 (372)
213 3q7a_A Farnesyltransferase alp 97.8 0.00038 1.3E-08 60.7 13.0 174 25-226 49-241 (349)
214 2v5f_A Prolyl 4-hydroxylase su 97.7 0.00041 1.4E-08 49.2 9.9 74 154-227 7-80 (104)
215 4e6h_A MRNA 3'-END-processing 97.6 0.0021 7.1E-08 61.2 16.8 184 27-225 357-573 (679)
216 3ly7_A Transcriptional activat 97.5 0.0029 9.8E-08 55.4 14.0 126 87-226 214-343 (372)
217 3q7a_A Farnesyltransferase alp 97.4 0.00055 1.9E-08 59.7 9.3 180 82-282 63-256 (349)
218 3u64_A Protein TP_0956; tetrat 97.4 0.0014 4.6E-08 55.4 11.2 86 87-181 178-269 (301)
219 3txn_A 26S proteasome regulato 97.4 0.038 1.3E-06 48.9 20.5 149 31-179 56-208 (394)
220 1pc2_A Mitochondria fission pr 97.4 0.0027 9.2E-08 48.3 11.2 99 128-240 14-115 (152)
221 3ffl_A Anaphase-promoting comp 97.4 0.0055 1.9E-07 47.0 12.9 98 120-217 28-146 (167)
222 3bee_A Putative YFRE protein; 97.3 0.0014 4.9E-08 45.5 8.0 63 112-180 6-71 (93)
223 4b4t_S RPN3, 26S proteasome re 97.2 0.00056 1.9E-08 62.2 6.7 221 46-278 149-387 (523)
224 4g26_A Pentatricopeptide repea 97.0 0.029 1E-06 51.3 16.8 167 35-222 28-204 (501)
225 3u64_A Protein TP_0956; tetrat 97.0 0.098 3.4E-06 44.1 17.7 90 127-226 178-273 (301)
226 4b4t_R RPN7, 26S proteasome re 96.8 0.012 4E-07 52.8 12.1 184 72-266 130-321 (429)
227 3bee_A Putative YFRE protein; 96.8 0.0051 1.8E-07 42.6 7.4 65 74-144 7-75 (93)
228 1pc2_A Mitochondria fission pr 96.8 0.014 4.7E-07 44.3 10.1 71 111-185 31-104 (152)
229 4g26_A Pentatricopeptide repea 96.6 0.2 6.7E-06 45.8 18.8 166 77-262 30-206 (501)
230 3mkq_A Coatomer beta'-subunit; 96.6 0.1 3.4E-06 50.0 17.6 25 74-98 682-707 (814)
231 4b4t_P 26S proteasome regulato 96.4 0.2 7E-06 45.0 17.0 126 32-157 136-263 (445)
232 4b4t_R RPN7, 26S proteasome re 95.8 0.18 6.2E-06 45.1 13.5 105 39-146 137-242 (429)
233 3o48_A Mitochondria fission 1 95.6 0.39 1.3E-05 35.3 12.2 80 152-240 40-122 (134)
234 1nzn_A CGI-135 protein, fissio 95.6 0.22 7.5E-06 36.3 10.8 99 128-240 17-118 (126)
235 2uy1_A Cleavage stimulation fa 95.3 0.72 2.5E-05 41.9 16.1 22 41-62 221-242 (493)
236 4h7y_A Dual specificity protei 95.1 0.44 1.5E-05 35.9 11.3 104 114-225 15-126 (161)
237 1y8m_A FIS1; mitochondria, unk 95.0 0.69 2.4E-05 34.4 12.2 81 151-240 38-121 (144)
238 3lpz_A GET4 (YOR164C homolog); 94.8 1.7 5.9E-05 37.3 21.8 152 27-180 49-215 (336)
239 4h7y_A Dual specificity protei 94.7 0.34 1.2E-05 36.5 9.8 85 89-180 36-122 (161)
240 2wpv_A GET4, UPF0363 protein Y 94.5 2 6.9E-05 36.5 18.9 129 88-217 29-158 (312)
241 1ya0_A SMG-7 transcript varian 94.4 0.16 5.5E-06 46.3 9.0 63 111-179 151-213 (497)
242 1nzn_A CGI-135 protein, fissio 94.1 0.56 1.9E-05 34.2 9.7 70 112-185 35-107 (126)
243 3mkq_A Coatomer beta'-subunit; 93.9 2.1 7.2E-05 40.7 16.2 102 44-176 663-773 (814)
244 1ya0_A SMG-7 transcript varian 93.2 0.18 6E-06 46.0 6.8 61 74-140 153-214 (497)
245 2uy1_A Cleavage stimulation fa 92.5 5.8 0.0002 35.8 19.6 47 52-105 198-245 (493)
246 2ff4_A Probable regulatory pro 92.3 1.5 5.1E-05 38.4 11.6 61 113-179 172-232 (388)
247 3mkq_B Coatomer subunit alpha; 92.1 3.3 0.00011 32.0 11.8 80 113-218 35-114 (177)
248 4b4t_O 26S proteasome regulato 91.3 2 7E-05 37.7 11.2 166 87-257 91-273 (393)
249 2yin_A DOCK2, dedicator of cyt 91.1 7.8 0.00027 34.5 14.9 125 35-163 17-144 (436)
250 2w2u_A Hypothetical P60 katani 91.0 2 6.9E-05 28.7 8.5 32 113-144 20-51 (83)
251 1y8m_A FIS1; mitochondria, unk 90.8 0.84 2.9E-05 34.0 6.9 70 110-184 37-109 (144)
252 3o48_A Mitochondria fission 1 90.8 0.98 3.4E-05 33.1 7.2 69 111-184 39-110 (134)
253 4gns_B Protein CSD3, chitin bi 90.1 9.7 0.00033 36.4 15.3 85 88-178 301-397 (754)
254 1wfd_A Hypothetical protein 15 88.4 4.4 0.00015 27.6 9.1 34 111-144 14-47 (93)
255 2v6x_A Vacuolar protein sortin 88.3 4.1 0.00014 27.1 9.0 35 110-144 11-45 (85)
256 4b4t_S RPN3, 26S proteasome re 88.2 3.2 0.00011 37.8 10.0 138 87-226 151-303 (523)
257 2cpt_A SKD1 protein, vacuolar 87.9 2.7 9.2E-05 30.1 7.7 34 111-144 17-50 (117)
258 2ff4_A Probable regulatory pro 87.7 11 0.00038 32.8 13.2 90 125-221 128-233 (388)
259 2v6y_A AAA family ATPase, P60 87.5 1.4 4.8E-05 29.4 5.6 29 115-143 14-42 (83)
260 2wm9_A Dedicator of cytokinesi 86.9 8.3 0.00028 34.2 12.0 92 33-124 11-140 (428)
261 4a5x_A MITD1, MIT domain-conta 86.6 5.5 0.00019 26.7 8.9 34 111-144 15-48 (86)
262 3spa_A Mtrpol, DNA-directed RN 86.6 5 0.00017 39.9 10.8 103 111-221 126-229 (1134)
263 2crb_A Nuclear receptor bindin 86.2 2.1 7.3E-05 29.0 5.8 38 107-144 10-47 (97)
264 4fhn_B Nucleoporin NUP120; pro 83.8 5.9 0.0002 39.9 10.5 127 39-173 848-992 (1139)
265 2w2u_A Hypothetical P60 katani 81.8 4.1 0.00014 27.1 5.8 35 29-64 16-50 (83)
266 4a5x_A MITD1, MIT domain-conta 80.2 4 0.00014 27.4 5.4 37 27-64 11-47 (86)
267 4fhn_B Nucleoporin NUP120; pro 79.9 17 0.00058 36.6 12.2 102 116-219 846-964 (1139)
268 2v6y_A AAA family ATPase, P60 79.9 5.2 0.00018 26.6 5.8 34 30-64 9-42 (83)
269 2r17_C Vacuolar protein sortin 79.4 27 0.00091 29.3 19.2 117 29-145 95-228 (298)
270 3t5v_B Nuclear mRNA export pro 78.6 22 0.00076 31.8 11.2 163 87-259 141-323 (455)
271 3t5x_A PCI domain-containing p 77.1 8.9 0.0003 30.2 7.4 29 153-181 15-43 (203)
272 2crb_A Nuclear receptor bindin 75.7 7.2 0.00025 26.4 5.4 29 35-63 17-45 (97)
273 3mkq_B Coatomer subunit alpha; 75.7 25 0.00085 27.0 13.1 98 45-178 17-115 (177)
274 1wfd_A Hypothetical protein 15 74.4 8.7 0.0003 26.1 5.8 37 28-65 11-47 (93)
275 3kae_A CDC27, possible protein 73.8 29 0.00098 26.8 14.8 64 79-142 68-144 (242)
276 2cpt_A SKD1 protein, vacuolar 71.7 10 0.00034 27.1 5.8 35 29-64 15-49 (117)
277 2dl1_A Spartin; SPG20, MIT, st 71.5 16 0.00055 25.9 6.7 33 112-144 22-54 (116)
278 2v6x_A Vacuolar protein sortin 70.6 11 0.00038 24.9 5.6 35 29-64 10-44 (85)
279 2yin_A DOCK2, dedicator of cyt 67.9 65 0.0022 28.5 15.0 104 73-180 15-120 (436)
280 3re2_A Predicted protein; meni 66.9 27 0.00091 30.2 8.2 93 87-181 230-325 (472)
281 4gns_B Protein CSD3, chitin bi 66.1 39 0.0013 32.3 10.3 85 127-218 300-396 (754)
282 2wb7_A PT26-6P; extra chromoso 65.1 71 0.0024 28.7 10.9 28 114-142 490-517 (526)
283 4gq4_A Menin; tumor suppressor 64.6 32 0.0011 30.3 8.4 93 87-181 237-332 (489)
284 2rpa_A Katanin P60 ATPase-cont 63.6 7.4 0.00025 25.5 3.4 28 116-143 16-43 (78)
285 3u84_A Menin; MLL, JUND, ledgf 63.0 41 0.0014 29.6 8.8 92 87-181 252-347 (550)
286 3ax2_A Mitochondrial import re 60.9 9.8 0.00033 24.6 3.6 31 115-145 20-50 (73)
287 3spa_A Mtrpol, DNA-directed RN 58.5 1.5E+02 0.0052 29.6 13.4 120 151-278 126-258 (1134)
288 2wm9_A Dedicator of cytokinesi 57.5 16 0.00055 32.4 5.7 53 33-85 88-140 (428)
289 3kae_A CDC27, possible protein 55.4 69 0.0024 24.7 10.5 62 118-179 68-141 (242)
290 1om2_A Protein (mitochondrial 55.3 15 0.00053 25.0 4.0 30 115-144 23-52 (95)
291 4gq2_M Nucleoporin NUP120; bet 55.1 55 0.0019 32.2 9.5 65 116-180 844-925 (950)
292 2o8p_A 14-3-3 domain containin 50.8 79 0.0027 25.2 8.1 53 126-178 139-194 (227)
293 4gq2_M Nucleoporin NUP120; bet 48.5 66 0.0023 31.6 8.9 65 79-143 846-928 (950)
294 3eab_A Spastin; spastin, MIT, 48.2 23 0.00079 23.8 3.9 18 126-143 33-50 (89)
295 2jpu_A ORF C02003 protein; sol 48.1 19 0.00064 26.1 3.7 31 6-41 5-35 (129)
296 1wy6_A Hypothetical protein ST 46.1 89 0.003 23.2 7.7 30 152-181 125-154 (172)
297 2br9_A 14-3-3E, 14-3-3 protein 45.6 1E+02 0.0035 24.7 8.1 53 89-141 147-202 (234)
298 3iqu_A 14-3-3 protein sigma; s 43.6 1.2E+02 0.004 24.4 8.1 54 88-141 149-205 (236)
299 2ijq_A Hypothetical protein; s 43.1 54 0.0018 24.7 5.7 72 156-227 36-109 (161)
300 2cwy_A Hypothetical protein TT 42.6 42 0.0014 22.7 4.6 67 158-227 7-73 (94)
301 1zb1_A BRO1 protein; AIP1, BRO 42.2 1.7E+02 0.0057 25.3 10.1 33 71-103 121-160 (392)
302 3t5x_A PCI domain-containing p 42.2 1E+02 0.0035 23.9 7.6 60 109-169 11-70 (203)
303 3ubw_A 14-3-3E, 14-3-3 protein 41.1 1.3E+02 0.0044 24.5 8.1 53 89-141 173-228 (261)
304 4gq4_A Menin; tumor suppressor 41.0 1.8E+02 0.0063 25.6 9.3 112 50-162 239-353 (489)
305 3uzd_A 14-3-3 protein gamma; s 40.9 1.3E+02 0.0045 24.3 8.1 53 89-141 148-203 (248)
306 2xze_A STAM-binding protein; h 39.1 59 0.002 23.9 5.4 34 110-143 38-71 (146)
307 3efz_A 14-3-3 protein; 14-3-3, 37.9 1.3E+02 0.0045 24.6 7.7 54 88-141 168-226 (268)
308 2dl1_A Spartin; SPG20, MIT, st 37.3 92 0.0032 22.0 5.8 35 28-63 18-52 (116)
309 3re2_A Predicted protein; meni 34.9 2.2E+02 0.0077 24.6 9.8 109 53-162 235-346 (472)
310 4b4t_O 26S proteasome regulato 34.1 2.3E+02 0.0078 24.4 15.1 128 91-221 58-197 (393)
311 2ijq_A Hypothetical protein; s 34.0 1.5E+02 0.005 22.2 7.3 63 120-182 40-105 (161)
312 2vkj_A TM1634; membrane protei 33.8 78 0.0027 21.2 4.6 17 45-61 65-81 (106)
313 2ymb_A MITD1, MIT domain-conta 32.9 9.2 0.00031 31.3 0.0 34 111-144 22-55 (257)
314 3eab_A Spastin; spastin, MIT, 32.2 62 0.0021 21.7 4.0 36 28-63 12-49 (89)
315 1zbp_A Hypothetical protein VP 31.5 82 0.0028 25.9 5.5 35 205-241 43-77 (273)
316 3u84_A Menin; MLL, JUND, ledgf 30.2 2.9E+02 0.0099 24.4 9.8 108 54-162 258-368 (550)
317 1wy6_A Hypothetical protein ST 27.6 1.9E+02 0.0064 21.4 7.2 93 112-221 59-153 (172)
318 2cwy_A Hypothetical protein TT 24.1 1.7E+02 0.0056 19.6 5.6 61 120-182 9-69 (94)
319 2a9u_A Ubiquitin carboxyl-term 23.8 1.7E+02 0.0059 21.4 5.6 36 110-145 40-75 (144)
320 3myv_A SUSD superfamily protei 22.8 2E+02 0.0069 25.2 7.0 53 128-180 164-218 (454)
321 4a1g_A Mitotic checkpoint seri 21.5 1.4E+02 0.0049 22.0 4.8 45 96-140 85-129 (152)
322 2zan_A Vacuolar protein sortin 21.1 20 0.00069 31.7 0.0 26 119-144 18-43 (444)
323 2xze_A STAM-binding protein; h 20.9 2.1E+02 0.0073 20.8 5.6 36 29-64 36-71 (146)
324 3t5v_B Nuclear mRNA export pro 20.6 3.5E+02 0.012 23.9 8.0 62 108-169 216-282 (455)
325 3kez_A Putative sugar binding 20.2 2.5E+02 0.0085 24.7 7.0 52 129-180 171-224 (461)
No 1
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=100.00 E-value=3.8e-41 Score=291.30 Aligned_cols=282 Identities=33% Similarity=0.565 Sum_probs=246.8
Q ss_pred HhhHHHHHHHHHHhhccC-C---CC--C-CC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 022992 5 IARAEEFEKKAEKKLNGW-G---LF--G-SK-YEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAY 76 (289)
Q Consensus 5 ~~~a~~~~~~A~~~~k~~-~---~~--~-~~-~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~ 76 (289)
+++|.+++++|+|++++. + +| + |+ +++|+++|.+++.+|...|++++|+.+|.++++++++.|++...+.++
T Consensus 1 ~~~a~~~~~~a~k~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~ 80 (292)
T 1qqe_A 1 ISDPVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTY 80 (292)
T ss_dssp CCCHHHHHHHHHHHSSCCCTHHHHHSCCSHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhCcCCCcchhcCCCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 468999999999999941 1 33 3 54 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhccCccchHHHH
Q 022992 77 VDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE-HNIEQTIVFFEKAADMFQNEEVTTSANQC 154 (289)
Q Consensus 77 ~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~-g~~~~A~~~y~~A~~~~~~~~~~~~~~~~ 154 (289)
.++|.+|... ++++|+.+|++|+.+++..|++...+.++.++|.+|... |++++|+.+|++|+++++..+.......+
T Consensus 81 ~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~ 160 (292)
T 1qqe_A 81 VEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKC 160 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHH
Confidence 9999999887 999999999999999999999999999999999999996 99999999999999999988877777889
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHH
Q 022992 155 KQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRL 234 (289)
Q Consensus 155 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~ 234 (289)
+.++|.++..+|+|++|+.+|++++......+...+.....++++|.|+..+|++..|..+|+++++++|.+..+.+..+
T Consensus 161 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~ 240 (292)
T 1qqe_A 161 FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNF 240 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 99999999999999999999999986554443323445557889999999999999999999999999999998888889
Q ss_pred HHHHHHHHcccCHHHHHHHHHhccccCCCchhHHHHHHHHHHhccccccccCCCC
Q 022992 235 LSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKELEEDDLT 289 (289)
Q Consensus 235 l~~l~~a~~~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (289)
+..++.++..+|.+.+++++..|+.+..+|||+..++.++++.+.. +|+|||
T Consensus 241 l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~~~---~~~~~~ 292 (292)
T 1qqe_A 241 LKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESIQQ---QEDDLL 292 (292)
T ss_dssp HHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHH---HHCC--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhhc---cccccC
Confidence 9999999988899999999999999999999999999999999954 466776
No 2
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=100.00 E-value=3.6e-36 Score=261.89 Aligned_cols=270 Identities=24% Similarity=0.298 Sum_probs=245.7
Q ss_pred Ccch-HhhHHHHHHHHHHhhcc-CCCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022992 1 MGDQ-IARAEEFEKKAEKKLNG-WGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVD 78 (289)
Q Consensus 1 ~~~~-~~~a~~~~~~A~~~~k~-~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~ 78 (289)
|+.+ ..+|.+++++|++++++ ++.|+|+|++|+.+|.+++.+|+..|++++|+.+|.++++++.+.+++..++.++.+
T Consensus 2 ~~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~ 81 (307)
T 2ifu_A 2 IAAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQ 81 (307)
T ss_dssp -CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6775 88999999999999994 444579999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHH
Q 022992 79 AAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQK 157 (289)
Q Consensus 79 ~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~ 157 (289)
+|.+|... ++++|+.+|++|++++...|++...+.++.++|.+|.. |++++|+.+|++|+++++..++......++.+
T Consensus 82 lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~ 160 (307)
T 2ifu_A 82 AGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGK 160 (307)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 99999887 99999999999999999999999999999999999999 99999999999999999998888888899999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHH
Q 022992 158 VAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSD 237 (289)
Q Consensus 158 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~ 237 (289)
+|.++..+|+|++|+.+|++++......+. .+.....++++|.+++.+|++..|...|++++ ++|.+..+.++.++..
T Consensus 161 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~ 238 (307)
T 2ifu_A 161 ASRLLVRQQKFDEAAASLQKEKSMYKEMEN-YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALED 238 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHH
Confidence 999999999999999999999865544332 22344567888999999999999999999999 9999999999999999
Q ss_pred HHHHHcccCHHHHHHHHHhccccCCCchhHHHHHHHH
Q 022992 238 IAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRV 274 (289)
Q Consensus 238 l~~a~~~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~ 274 (289)
++.++..+|.+.+.. +..|+.+..+|||.+.+..++
T Consensus 239 l~~~~~~~d~~~~~~-~~~~~~~~~ld~~~~~~~~~l 274 (307)
T 2ifu_A 239 LLQAYDEQDEEQLLR-VCRSPLVTYMDNDYAKLAISL 274 (307)
T ss_dssp HHHHHHTTCHHHHHH-HTTSHHHHTSCHHHHHHHHTC
T ss_pred HHHHHHhcCHHHHHH-HHhCchhhhhhHHHHHHHHhC
Confidence 999999999999999 666999999999988776554
No 3
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.88 E-value=1.8e-20 Score=161.48 Aligned_cols=214 Identities=11% Similarity=0.047 Sum_probs=164.4
Q ss_pred chHhhHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH--------------------HHHHHHHcCCHHHHHHHHHHHHHH
Q 022992 3 DQIARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDK--------------------AANSFKLAKSWDKAGATYVKLANC 62 (289)
Q Consensus 3 ~~~~~a~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~--------------------A~~~~~~~g~~~~A~~~~~~a~~~ 62 (289)
|+..+|..++.+|...+.. .|+|++|+++|.+ +|.+|...|++++|+.+|.+|+++
T Consensus 31 ~~~~~A~~~~~~a~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 106 (292)
T 1qqe_A 31 YKFEEAADLCVQAATIYRL----RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI 106 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHH----TTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4477888888888777651 1455555555544 466778899999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 022992 63 HLKLESKHEAAQAYVDAAHCYKK--TSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAAD 140 (289)
Q Consensus 63 ~~~~~~~~~aa~~~~~~a~~~~~--~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~ 140 (289)
+...|++..++.++.++|.+|.. .++++|+.+|++|+++++..++....+.++.++|.++..+|++++|+.+|+++++
T Consensus 107 ~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 186 (292)
T 1qqe_A 107 FTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (292)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999999999976 4999999999999999999999989999999999999999999999999999999
Q ss_pred HHhccCcc-chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHH--ccCCHHHHHHHHH
Q 022992 141 MFQNEEVT-TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQL--CKGDVVAITNALE 217 (289)
Q Consensus 141 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l--~~gd~~~A~~~~~ 217 (289)
+.+..+.. .....++.++|.++..+|++++|+.+|++++...+... .......+..++..+. ..+++..|...|+
T Consensus 187 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~--~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~ 264 (292)
T 1qqe_A 187 SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA--DSRESNFLKSLIDAVNEGDSEQLSEHCKEFD 264 (292)
T ss_dssp TTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred HHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC--CcHHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Confidence 98776554 35667899999999999999999999999973221111 1111122333444432 2345666666655
Q ss_pred HHhhc
Q 022992 218 RYQDM 222 (289)
Q Consensus 218 ~~~~~ 222 (289)
++..+
T Consensus 265 ~~~~l 269 (292)
T 1qqe_A 265 NFMRL 269 (292)
T ss_dssp TSSCC
T ss_pred cCCcc
Confidence 44433
No 4
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.87 E-value=6.6e-20 Score=163.29 Aligned_cols=238 Identities=10% Similarity=0.026 Sum_probs=196.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCC-HHHHHHHHH
Q 022992 39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR-LSMAARYYK 116 (289)
Q Consensus 39 A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~-~~~~a~~l~ 116 (289)
.|..+...|++++|+.+|.+|+.+....+++...+.++..+|.+|... ++++|+.++++|+++++..++ ....+.++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 567788899999999999999999999999999999999999999877 999999999999999999988 888999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHH
Q 022992 117 EIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHL 196 (289)
Q Consensus 117 ~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 196 (289)
++|.++...|++++|+.+|++|+++.+..++....+.++.++|.++..+|++++|+.+|++++........ .......+
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 267 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI-LPSLPQAY 267 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-GGGHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc-chhHHHHH
Confidence 99999999999999999999999999999888888899999999999999999999999999854332211 12234567
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHc-ccCHHHHHHHHHhccccCCCchhHHHHHHHHH
Q 022992 197 LNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMD-EEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVK 275 (289)
Q Consensus 197 ~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~-~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~ 275 (289)
.++|.++...|+++.|...+++++.+.+..+...-...+..++..+. .|+.+.+.+++..+.... ..|........+.
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~la 346 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM-LYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc-CHHHHHHHHHHHH
Confidence 88999999999999999999999887655442222222455666664 777788888888887774 3444445555554
Q ss_pred Hhc
Q 022992 276 EKL 278 (289)
Q Consensus 276 ~~~ 278 (289)
+.+
T Consensus 347 ~~y 349 (383)
T 3ulq_A 347 KYY 349 (383)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 5
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.87 E-value=2.7e-19 Score=159.28 Aligned_cols=237 Identities=12% Similarity=0.042 Sum_probs=193.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCC-HHHHHHHHH
Q 022992 39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR-LSMAARYYK 116 (289)
Q Consensus 39 A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~-~~~~a~~l~ 116 (289)
-|..+...|++++|+.+|.+|+.+....+++...+.++.++|.+|... ++++|+.++++|+++++..++ ....+.++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 366778899999999999999999999999999999999999999877 999999999999999999887 668999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHH
Q 022992 117 EIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHL 196 (289)
Q Consensus 117 ~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 196 (289)
++|.++...|++++|+++|++|+++.+..++....+.++.++|.++..+|++++|+.+|++++........ .. ....+
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~-~~~~~ 264 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DL-LPKVL 264 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GG-HHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hh-HHHHH
Confidence 99999999999999999999999999988888888899999999999999999999999999854322111 11 24567
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHc-ccCHHHHHHHHHhccccCCCchhHHHHHHHHH
Q 022992 197 LNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMD-EEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVK 275 (289)
Q Consensus 197 ~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~-~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~ 275 (289)
.++|.++...|+++.|...+++++++.+..+...-...+..+...+. .++...+.+++..+..... .|........+.
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~-~~~~~~~~~~la 343 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL-HAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC-hhHHHHHHHHHH
Confidence 88999999999999999999999998777653322223444444453 6677788888888777543 344444444444
Q ss_pred Hhc
Q 022992 276 EKL 278 (289)
Q Consensus 276 ~~~ 278 (289)
+..
T Consensus 344 ~~y 346 (378)
T 3q15_A 344 AVF 346 (378)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 6
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.86 E-value=6.1e-19 Score=156.61 Aligned_cols=183 Identities=11% Similarity=0.122 Sum_probs=86.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022992 40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI 118 (289)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~l 118 (289)
|.+|...|++++|..+|.+++.+....+++...+.++..+|.+|... ++++|+.++++++.+.+..++....+.++..+
T Consensus 54 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 133 (406)
T 3sf4_A 54 GNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNL 133 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHH
Confidence 34444455555555555555555555554444455555555555443 55555555555555555555544455555555
Q ss_pred HHHHHhcCC--------------------HHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 022992 119 AELYESEHN--------------------IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI 178 (289)
Q Consensus 119 a~~~~~~g~--------------------~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 178 (289)
|.++...|+ +++|+.+|++++.+.+..+.......++..+|.++...|++++|+.+|+++
T Consensus 134 ~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 213 (406)
T 3sf4_A 134 GNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 213 (406)
T ss_dssp HHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHH
T ss_pred HHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555555555 555555555555554444444444444555555555555555555555554
Q ss_pred HHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcC
Q 022992 179 ARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMD 223 (289)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~ 223 (289)
+......+. .......+..+|.++...|+++.|...+++++.+.
T Consensus 214 l~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 257 (406)
T 3sf4_A 214 LLIAKEFGD-KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA 257 (406)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCC-cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 422211110 01112233344444444455555544444444433
No 7
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.85 E-value=8.5e-19 Score=156.70 Aligned_cols=249 Identities=11% Similarity=0.136 Sum_probs=184.8
Q ss_pred hhHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH------------------HHHHHHcCCHHHHHHHHHHHHHHHHhcC
Q 022992 6 ARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKA------------------ANSFKLAKSWDKAGATYVKLANCHLKLE 67 (289)
Q Consensus 6 ~~a~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A------------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 67 (289)
..+..++..|...+.. |++++|..+|.++ |.+|...|++++|..+|.+++++.+..+
T Consensus 46 ~~~~~l~~~g~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 120 (411)
T 4a1s_A 46 SMCLELALEGERLCNA-----GDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN 120 (411)
T ss_dssp HHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHh-----CcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 3455555555555442 4666666666665 5567788999999999999999988888
Q ss_pred CHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC-----------------HH
Q 022992 68 SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHN-----------------IE 129 (289)
Q Consensus 68 ~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~-----------------~~ 129 (289)
+....+.++..+|.+|... ++++|+.+|++++.++...++....+.++.++|.++...|+ ++
T Consensus 121 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~ 200 (411)
T 4a1s_A 121 DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALT 200 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHH
Confidence 8888888899999988776 89999999999999988888888888899999999988888 89
Q ss_pred HHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCH
Q 022992 130 QTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDV 209 (289)
Q Consensus 130 ~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~ 209 (289)
+|+.+|++++++.+..+.......++..+|.++...|++++|+.+|++++......+. .......+..+|.++...|++
T Consensus 201 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~ 279 (411)
T 4a1s_A 201 RAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD-RAAERRANSNLGNSHIFLGQF 279 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHCcCH
Confidence 9999999998888877777777778889999999999999999999888754332211 112233566778888888898
Q ss_pred HHHHHHHHHHhhcCCCCCCc-hHHHHHHHHHHHH-cccCH----HHHHHHHHhcccc
Q 022992 210 VAITNALERYQDMDPTFSGT-REYRLLSDIAASM-DEEDI----AKFTDVVKEFDSM 260 (289)
Q Consensus 210 ~~A~~~~~~~~~~~~~~~~~-~e~~~l~~l~~a~-~~~d~----~~~~~al~~~~~~ 260 (289)
.+|...+++++.+.+..... .....+..++..+ ..|+. ..+++++..++..
T Consensus 280 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 280 EDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 88888888887766655422 2345566666655 36664 3444444444433
No 8
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.85 E-value=3.3e-18 Score=152.29 Aligned_cols=245 Identities=19% Similarity=0.097 Sum_probs=184.8
Q ss_pred hhHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHc
Q 022992 6 ARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLES-KHEAAQAYVDAAHCYK 84 (289)
Q Consensus 6 ~~a~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~aa~~~~~~a~~~~ 84 (289)
.+|..++.+|.+.++.. ++...-+..+...|.+|...|++++|+.++.+|++++++.++ ....+.++.++|.+|.
T Consensus 120 ~~A~~~~~~al~~~~~~----~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~ 195 (383)
T 3ulq_A 120 LSAIKFFKKAESKLIFV----KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL 195 (383)
T ss_dssp HHHHHHHHHHHTTGGGC----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhC----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH
Confidence 44555555554444311 344444555556678899999999999999999999999987 7888999999999998
Q ss_pred cC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHH
Q 022992 85 KT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAA 163 (289)
Q Consensus 85 ~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (289)
.. ++++|+.+|++|+++.+..++....+.++.++|.++...|++++|+.+|++|+++++..+..+....++.++|.++.
T Consensus 196 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 275 (383)
T 3ulq_A 196 DLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHY 275 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence 87 99999999999999999999999999999999999999999999999999999999988875566889999999999
Q ss_pred HhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCC---HHHHHHHHHHHhhcCCCCCCchHHHHHHHHHH
Q 022992 164 ELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGD---VVAITNALERYQDMDPTFSGTREYRLLSDIAA 240 (289)
Q Consensus 164 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd---~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~ 240 (289)
.+|++++|+.+|++++......+...+ ...+..++.++...|+ ...|...+++. .. ..........++.
T Consensus 276 ~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~al~~~~~~----~~--~~~~~~~~~~la~ 347 (383)
T 3ulq_A 276 KLGKIDKAHEYHSKGMAYSQKAGDVIY--LSEFEFLKSLYLSGPDEEAIQGFFDFLESK----ML--YADLEDFAIDVAK 347 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHH--HHHHHHHHHHHTSSCCHHHHHHHHHHHHHT----TC--HHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHHhCCCcHHHHHHHHHHHHHC----cC--HHHHHHHHHHHHH
Confidence 999999999999999754322211111 1124557888999999 44454444432 11 1223445667777
Q ss_pred HHc-ccCH----HHHHHHHHhccccCC
Q 022992 241 SMD-EEDI----AKFTDVVKEFDSMTP 262 (289)
Q Consensus 241 a~~-~~d~----~~~~~al~~~~~~~~ 262 (289)
.+. .|+. ..++.++...+.+..
T Consensus 348 ~y~~~g~~~~A~~~~~~al~~~~~i~~ 374 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQVRQLIQG 374 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence 764 7775 344555555444443
No 9
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.85 E-value=1.4e-18 Score=154.29 Aligned_cols=274 Identities=11% Similarity=0.062 Sum_probs=217.7
Q ss_pred HhhHHHHHHHHHHhhcc-------------CCCC-CCCHHHHHHHHHHH--------------------HHHHHHcCCHH
Q 022992 5 IARAEEFEKKAEKKLNG-------------WGLF-GSKYEDAADLFDKA--------------------ANSFKLAKSWD 50 (289)
Q Consensus 5 ~~~a~~~~~~A~~~~k~-------------~~~~-~~~~~~A~~~~~~A--------------------~~~~~~~g~~~ 50 (289)
..+|..++.+|-+.-.. ..++ .|++++|..+|.++ |.+|...|+++
T Consensus 25 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 104 (406)
T 3sf4_A 25 CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFD 104 (406)
T ss_dssp HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHH
Confidence 56778888777665331 1122 38888888888776 45677899999
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-C--------------------HHHHHHHHHHHHHHHHhcCCHH
Q 022992 51 KAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-S--------------------SNEAISCLEQAVNMFCDIGRLS 109 (289)
Q Consensus 51 ~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~--------------------~~~A~~~~~~A~~~~~~~g~~~ 109 (289)
+|..++.+++++....+++...+.++..+|.+|... + +++|+.++++++.+....++..
T Consensus 105 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~ 184 (406)
T 3sf4_A 105 EAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRA 184 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcH
Confidence 999999999999999999999999999999999777 8 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccc
Q 022992 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLK 189 (289)
Q Consensus 110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 189 (289)
..+.++.++|.++...|++++|+.+|++++++.+..+.......++..+|.++...|++++|+.+|++++......+. .
T Consensus 185 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~ 263 (406)
T 3sf4_A 185 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD-R 263 (406)
T ss_dssp HHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-H
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcC-c
Confidence 999999999999999999999999999999999998888888889999999999999999999999999854433221 2
Q ss_pred cchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCc-hHHHHHHHHHHHHc-ccCH----HHHHHHHHhccccCCC
Q 022992 190 YGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGT-REYRLLSDIAASMD-EEDI----AKFTDVVKEFDSMTPL 263 (289)
Q Consensus 190 ~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~-~e~~~l~~l~~a~~-~~d~----~~~~~al~~~~~~~~~ 263 (289)
......+..+|.++...|++..|...+++++.+.+..... .....+..++..+. .|+. ..++++++.++.++ .
T Consensus 264 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~ 342 (406)
T 3sf4_A 264 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG-D 342 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-C
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-C
Confidence 2234567788999999999999999999998876665532 23556667777663 6774 45666666655554 2
Q ss_pred chhHHHHHHHHHHhccc
Q 022992 264 DPWKTTLLLRVKEKLKA 280 (289)
Q Consensus 264 d~~~~~~~~~~~~~~~~ 280 (289)
.+.....+..+...+..
T Consensus 343 ~~~~~~~~~~l~~~~~~ 359 (406)
T 3sf4_A 343 KSGELTARLNLSDLQMV 359 (406)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHH
Confidence 34555555555555433
No 10
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.85 E-value=1.9e-18 Score=148.77 Aligned_cols=228 Identities=10% Similarity=0.098 Sum_probs=180.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHH
Q 022992 33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMA 111 (289)
Q Consensus 33 ~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~ 111 (289)
...+...+.+|...|++++|..++.+++++....+++...+.++..+|.+|... ++++|+.++++++.+.+..++....
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 122 (338)
T 3ro2_A 43 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 122 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHH
Confidence 444555577788899999999999999999999999888899999999999777 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHH
Q 022992 112 ARYYKEIAELYESEHN--------------------IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS 171 (289)
Q Consensus 112 a~~l~~la~~~~~~g~--------------------~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 171 (289)
+.++..+|.++...|+ +++|+.+|++++.+.+..+.......++..+|.++...|++++|
T Consensus 123 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 202 (338)
T 3ro2_A 123 ARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA 202 (338)
T ss_dssp HHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 9999999999999999 99999999999999888777777778899999999999999999
Q ss_pred HHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCc-hHHHHHHHHHHHH-cccCH--
Q 022992 172 IEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGT-REYRLLSDIAASM-DEEDI-- 247 (289)
Q Consensus 172 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~-~e~~~l~~l~~a~-~~~d~-- 247 (289)
+.+|++++......+. .......+..+|.++...|+++.|...+++++.+.+..... .....+..++..+ ..|+.
T Consensus 203 ~~~~~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 281 (338)
T 3ro2_A 203 VIAHEQRLLIAKEFGD-KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEK 281 (338)
T ss_dssp HHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHH
Confidence 9999999754332211 12233456778888889999999999999988776655432 2345566666665 36665
Q ss_pred --HHHHHHHHhccccC
Q 022992 248 --AKFTDVVKEFDSMT 261 (289)
Q Consensus 248 --~~~~~al~~~~~~~ 261 (289)
..+++++..++...
T Consensus 282 A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 282 AIDYHLKHLAIAQELK 297 (338)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcC
Confidence 34455555544443
No 11
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.84 E-value=1.4e-18 Score=150.58 Aligned_cols=206 Identities=15% Similarity=0.045 Sum_probs=162.8
Q ss_pred HhhHHHHHHHHHHhhccCCC--------------C--CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC
Q 022992 5 IARAEEFEKKAEKKLNGWGL--------------F--GSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLES 68 (289)
Q Consensus 5 ~~~a~~~~~~A~~~~k~~~~--------------~--~~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 68 (289)
..+|..++.+|...++..+. + .++...++..|..+|.+|...|++++|+.+|.+|+++++..|+
T Consensus 32 ~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~ 111 (307)
T 2ifu_A 32 YDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT 111 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC
Confidence 56677777777665541100 0 1344555555666677788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCcc
Q 022992 69 KHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT 148 (289)
Q Consensus 69 ~~~aa~~~~~~a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~ 148 (289)
+...+.++.++|.+|...++++|+.+|++|+++++..+++...+.++.++|.++..+|++++|+.+|++++.+++..+..
T Consensus 112 ~~~~a~~~~~lg~~~~~g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 191 (307)
T 2ifu_A 112 PDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENY 191 (307)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh
Confidence 99999999999999976899999999999999999999999999999999999999999999999999999999988776
Q ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHH
Q 022992 149 TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITN 214 (289)
Q Consensus 149 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~ 214 (289)
.....++..+|.++..+|++++|+.+|++++ ...... .......+..++..+ ..||.+.+..
T Consensus 192 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~--~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 192 PTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS--GSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST--TSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC--CCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 6667789999999999999999999999997 432211 111112223333333 5677765554
No 12
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.84 E-value=2.9e-18 Score=147.56 Aligned_cols=243 Identities=11% Similarity=0.087 Sum_probs=198.8
Q ss_pred HhhHHHHHHHHHHhhcc-------------CCCC-CCCHHHHHHHHHHH--------------------HHHHHHcCCHH
Q 022992 5 IARAEEFEKKAEKKLNG-------------WGLF-GSKYEDAADLFDKA--------------------ANSFKLAKSWD 50 (289)
Q Consensus 5 ~~~a~~~~~~A~~~~k~-------------~~~~-~~~~~~A~~~~~~A--------------------~~~~~~~g~~~ 50 (289)
..+|..++.+|-+.-.+ ..++ .|++++|.++|.++ +.+|...|+++
T Consensus 21 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 100 (338)
T 3ro2_A 21 CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFD 100 (338)
T ss_dssp HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHH
Confidence 56777777777655321 1122 38888888887775 45677899999
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-C--------------------HHHHHHHHHHHHHHHHhcCCHH
Q 022992 51 KAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-S--------------------SNEAISCLEQAVNMFCDIGRLS 109 (289)
Q Consensus 51 ~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~--------------------~~~A~~~~~~A~~~~~~~g~~~ 109 (289)
+|..++.+++++....+++...+.++..+|.+|... + +++|+.++++++.+....++..
T Consensus 101 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~ 180 (338)
T 3ro2_A 101 EAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRA 180 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 999999999999999999999999999999999776 7 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccc
Q 022992 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLK 189 (289)
Q Consensus 110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 189 (289)
..+.++..+|.++...|++++|+.+|++++++.+..+.......++..+|.++...|++++|+.+|++++......+. .
T Consensus 181 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~ 259 (338)
T 3ro2_A 181 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD-R 259 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-H
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc-h
Confidence 999999999999999999999999999999999988888778889999999999999999999999999755433221 2
Q ss_pred cchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCc-hHHHHHHHHHHHHc-ccCHH
Q 022992 190 YGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGT-REYRLLSDIAASMD-EEDIA 248 (289)
Q Consensus 190 ~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~-~e~~~l~~l~~a~~-~~d~~ 248 (289)
......+..++.++...|+++.|...+++++.+.+..... ........++..+. .|+.+
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 320 (338)
T 3ro2_A 260 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHD 320 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 2234556778999999999999999999998876655432 23455666777663 66654
No 13
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.83 E-value=2.9e-18 Score=153.24 Aligned_cols=256 Identities=10% Similarity=0.089 Sum_probs=206.6
Q ss_pred HhhHHHHHHHHHHhhcc-------------CCCCC-CCHHHHHHHHHHH--------------------HHHHHHcCCHH
Q 022992 5 IARAEEFEKKAEKKLNG-------------WGLFG-SKYEDAADLFDKA--------------------ANSFKLAKSWD 50 (289)
Q Consensus 5 ~~~a~~~~~~A~~~~k~-------------~~~~~-~~~~~A~~~~~~A--------------------~~~~~~~g~~~ 50 (289)
..+|..++.+|-+.-.+ ..++. |++++|..+|.++ |.+|...|+++
T Consensus 64 ~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 143 (411)
T 4a1s_A 64 CRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFD 143 (411)
T ss_dssp HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHH
Confidence 56777777777665322 11223 7888888887776 45577899999
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-C-----------------HHHHHHHHHHHHHHHHhcCCHHHHH
Q 022992 51 KAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-S-----------------SNEAISCLEQAVNMFCDIGRLSMAA 112 (289)
Q Consensus 51 ~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~-----------------~~~A~~~~~~A~~~~~~~g~~~~~a 112 (289)
+|..+|.+++++....++....+.++..+|.+|... + +++|+.++++++++....++....+
T Consensus 144 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~ 223 (411)
T 4a1s_A 144 EAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQG 223 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999999999999777 8 9999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccch
Q 022992 113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGV 192 (289)
Q Consensus 113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 192 (289)
.++..+|.++...|++++|+.+|++++++.+..+.......++..+|.++...|++++|+.+|++++........ ....
T Consensus 224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~ 302 (411)
T 4a1s_A 224 RACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGE-REVE 302 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC-HHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC-HHHH
Confidence 999999999999999999999999999999988877777889999999999999999999999999855433211 1223
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCC-chHHHHHHHHHHHHc-ccCH----HHHHHHHHhccccC
Q 022992 193 KGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSG-TREYRLLSDIAASMD-EEDI----AKFTDVVKEFDSMT 261 (289)
Q Consensus 193 ~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~-~~e~~~l~~l~~a~~-~~d~----~~~~~al~~~~~~~ 261 (289)
...+..+|.++...|++.+|...+++++.+.+.... ......+..++..+. .|+. ..+++++..++.++
T Consensus 303 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 377 (411)
T 4a1s_A 303 AQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXX 377 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc
Confidence 456778899999999999999999999887665542 233556667777664 7775 44555555544443
No 14
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.83 E-value=5.5e-18 Score=150.74 Aligned_cols=240 Identities=17% Similarity=0.101 Sum_probs=180.5
Q ss_pred hhHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHc
Q 022992 6 ARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLES-KHEAAQAYVDAAHCYK 84 (289)
Q Consensus 6 ~~a~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~aa~~~~~~a~~~~ 84 (289)
.+|..++.+|.+.++.. ++....+..+...|.+|...|++++|+.++.+|++++.+.++ ....+.++.++|.+|.
T Consensus 118 ~~A~~~~~~al~~~~~~----~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~ 193 (378)
T 3q15_A 118 VEAIGYYREAEKELPFV----SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD 193 (378)
T ss_dssp HHHHHHHHHHHTTGGGC----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhC----CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence 34444444444444310 233444445555577899999999999999999999998886 6688999999999998
Q ss_pred cC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHH
Q 022992 85 KT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAA 163 (289)
Q Consensus 85 ~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (289)
.. ++++|+++|++|+++.+..++....+.++.++|.++...|++++|+.+|++|+++++..+++.. ..++..+|.++.
T Consensus 194 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~la~~~~ 272 (378)
T 3q15_A 194 DFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGLSWTLC 272 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHHHHHHHHH
Confidence 87 9999999999999999999999999999999999999999999999999999999988777766 789999999999
Q ss_pred HhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCC---HHHHHHHHHHHhhcCCCCCCchHHHHHHHHHH
Q 022992 164 ELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGD---VVAITNALERYQDMDPTFSGTREYRLLSDIAA 240 (289)
Q Consensus 164 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd---~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~ 240 (289)
.+|++++|+.++++++......+...+ ...+..++.++...|+ ...|...+++. ... .....+...++.
T Consensus 273 ~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~l~~ly~~~~~~~~~~~al~~~~~~----~~~--~~~~~~~~~la~ 344 (378)
T 3q15_A 273 KAGQTQKAFQFIEEGLDHITARSHKFY--KELFLFLQAVYKETVDERKIHDLLSYFEKK----NLH--AYIEACARSAAA 344 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHCCTTCCSCH--HHHHHHHHHHHSSSCCHHHHHHHHHHHHHT----TCH--HHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHHhCCCcHHHHHHHHHHHHhC----CCh--hHHHHHHHHHHH
Confidence 999999999999999865432211111 1223445667777888 55555555541 111 222345567888
Q ss_pred HHc-ccCH----HHHHHHHHhcc
Q 022992 241 SMD-EEDI----AKFTDVVKEFD 258 (289)
Q Consensus 241 a~~-~~d~----~~~~~al~~~~ 258 (289)
.+. .|+. ..++.++...+
T Consensus 345 ~y~~~g~~~~A~~~~~~al~~~~ 367 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLKAQE 367 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHH
Confidence 774 7785 34555555433
No 15
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.80 E-value=2.8e-17 Score=138.37 Aligned_cols=175 Identities=16% Similarity=0.197 Sum_probs=150.2
Q ss_pred HhhHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHH
Q 022992 5 IARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKL--ESKHEAAQAYVDAAHC 82 (289)
Q Consensus 5 ~~~a~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~aa~~~~~~a~~ 82 (289)
+.+|..++.+|-+.++. ..+++...-+..+...|.+|...|++++|..+|.+++++..+. ++....+.++..+|.+
T Consensus 17 ~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 94 (283)
T 3edt_B 17 RGSAVPLCKQALEDLEK--TSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL 94 (283)
T ss_dssp SSSHHHHHHHHHHHHHH--HHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 67999999999888873 1234444556778889999999999999999999999999877 6667788899999999
Q ss_pred HccC-CHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc--CccchHHHHHHH
Q 022992 83 YKKT-SSNEAISCLEQAVNMFCDIGR--LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE--EVTTSANQCKQK 157 (289)
Q Consensus 83 ~~~~-~~~~A~~~~~~A~~~~~~~g~--~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~--~~~~~~~~~~~~ 157 (289)
|... ++++|+.+|++++.++...+. ....+.++.++|.++...|++++|+.+|+++++++... +.......++..
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 174 (283)
T 3edt_B 95 YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174 (283)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 9877 999999999999999987633 46788999999999999999999999999999997654 224456678999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Q 022992 158 VAQYAAELEQYHKSIEIYEEIARQ 181 (289)
Q Consensus 158 l~~~~~~~g~~~~A~~~~~~a~~~ 181 (289)
+|.++...|++++|+.+|++++..
T Consensus 175 la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 175 LASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999754
No 16
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=1.5e-16 Score=136.03 Aligned_cols=218 Identities=16% Similarity=0.171 Sum_probs=169.5
Q ss_pred HhhHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHH
Q 022992 5 IARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKL--ESKHEAAQAYVDAAHC 82 (289)
Q Consensus 5 ~~~a~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~aa~~~~~~a~~ 82 (289)
..+|..++.+|-+.... ..+++...-...+...+.+|...|++++|..+|.++++++.+. ++....+.++..+|.+
T Consensus 43 ~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 120 (311)
T 3nf1_A 43 YEVAVPLCKQALEDLEK--TSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVL 120 (311)
T ss_dssp HHHHHHHHHHHHHHHHH--HHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 44566666666555441 0112334445566667788889999999999999999999877 6667778899999999
Q ss_pred HccC-CHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc--CccchHHHHHHH
Q 022992 83 YKKT-SSNEAISCLEQAVNMFCDI--GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE--EVTTSANQCKQK 157 (289)
Q Consensus 83 ~~~~-~~~~A~~~~~~A~~~~~~~--g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~--~~~~~~~~~~~~ 157 (289)
|... ++++|+.++++++.++... ++....+.++..+|.++...|++++|+.+|+++++++... +.......++..
T Consensus 121 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 200 (311)
T 3nf1_A 121 YGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNN 200 (311)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9877 9999999999999999876 6777889999999999999999999999999999998765 334556678999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhccc------------------------------------------cccchhhH
Q 022992 158 VAQYAAELEQYHKSIEIYEEIARQSLNNNL------------------------------------------LKYGVKGH 195 (289)
Q Consensus 158 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~------------------------------------------~~~~~~~~ 195 (289)
+|.++...|++++|+.+|++++........ ........
T Consensus 201 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 280 (311)
T 3nf1_A 201 LASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTT 280 (311)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHH
Confidence 999999999999999999999754221100 01122344
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhcCC
Q 022992 196 LLNAGICQLCKGDVVAITNALERYQDMDP 224 (289)
Q Consensus 196 ~~~~~~~~l~~gd~~~A~~~~~~~~~~~~ 224 (289)
+..+|.++...|++++|...|++++++.+
T Consensus 281 ~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 281 LKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 66677888888888888888888876544
No 17
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.78 E-value=3.8e-16 Score=140.54 Aligned_cols=243 Identities=10% Similarity=0.054 Sum_probs=187.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 022992 36 FDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARY 114 (289)
Q Consensus 36 ~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~ 114 (289)
+...|.+|...|++++|.++|.++.......++..........++.++... ++++|+.++++++.+....++....+++
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 345578899999999999999999999999988777888888889888776 9999999999999999999998889999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhh
Q 022992 115 YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKG 194 (289)
Q Consensus 115 l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 194 (289)
+.++|.++...|++++|+.++++++......++......++..+|.++..+|+|++|..+|+++.......+........
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 99999999999999999999999999998888888888999999999999999999999999997544332211112234
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-----------------------------------------CchHHH
Q 022992 195 HLLNAGICQLCKGDVVAITNALERYQDMDPTFS-----------------------------------------GTREYR 233 (289)
Q Consensus 195 ~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~-----------------------------------------~~~e~~ 233 (289)
.+...|.++...|++..|...|..+.+..+... ...+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGID 297 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhh
Confidence 456678888888999988777766543222111 122333
Q ss_pred HHHHHHHHHcccCHHHHHHHHHhccccCCCchhHHHHHHHHHHhc
Q 022992 234 LLSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKL 278 (289)
Q Consensus 234 ~l~~l~~a~~~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~~ 278 (289)
....++.++..++...+..++..+......|+.....+..+.+.+
T Consensus 298 ~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 342 (434)
T 4b4t_Q 298 AMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTL 342 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 444455555555666677777776666666665555444444443
No 18
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=2.5e-16 Score=134.65 Aligned_cols=197 Identities=11% Similarity=0.070 Sum_probs=167.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHH
Q 022992 26 GSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLE--SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMF 102 (289)
Q Consensus 26 ~~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~ 102 (289)
+++...-+..+...+.++...|++++|..+|.+++++....+ +....+.++..+|.+|... ++++|+.++++++.++
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 99 (311)
T 3nf1_A 20 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR 99 (311)
T ss_dssp CTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 356667788889999999999999999999999999998776 5667788999999999777 9999999999999999
Q ss_pred Hhc--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc--CccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 022992 103 CDI--GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE--EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI 178 (289)
Q Consensus 103 ~~~--g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 178 (289)
... ++....+.++..+|.++...|++++|+.+|++++++.... +.......++..+|.++...|++++|+.+|+++
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 887 7778889999999999999999999999999999998665 445566788999999999999999999999999
Q ss_pred HHHHhhcc-ccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhc
Q 022992 179 ARQSLNNN-LLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDM 222 (289)
Q Consensus 179 ~~~~~~~~-~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~ 222 (289)
+....... .........+..++.++...|++++|...+++++++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 75432210 001123345677899999999999999999998864
No 19
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.76 E-value=4.2e-16 Score=119.91 Aligned_cols=155 Identities=11% Similarity=0.082 Sum_probs=145.3
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc
Q 022992 27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI 105 (289)
Q Consensus 27 ~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~ 105 (289)
+|....+..+...|.+|...|++++|..++.+++++.+..+++...+.++..+|.++... ++++|+.++++++.+.+..
T Consensus 3 ~d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 3 GSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 82 (164)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 466677788899999999999999999999999999999999999999999999999877 9999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992 106 GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ 181 (289)
Q Consensus 106 g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 181 (289)
+++...+.++.++|.++...|++++|+.++++++++.+..+.+.....++..+|.++...|++++|++++++++..
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988888888889999999999999999999999999744
No 20
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.76 E-value=3.9e-16 Score=129.83 Aligned_cols=227 Identities=14% Similarity=0.134 Sum_probs=164.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcC-CHH
Q 022992 32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIG-RLS 109 (289)
Q Consensus 32 A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g-~~~ 109 (289)
.++.+...|.++...|++++|+.+|.++++.. .+ ..++..+|.++... ++++|+.++++++++.+..+ +..
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 76 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH---KD----ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK 76 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---cc----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH
Confidence 35567777888888888888888888888775 22 45777888888766 88888888888888888764 556
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC--------------------ccchHHHHHHHHHHHHHHhcCHH
Q 022992 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE--------------------VTTSANQCKQKVAQYAAELEQYH 169 (289)
Q Consensus 110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~--------------------~~~~~~~~~~~l~~~~~~~g~~~ 169 (289)
..+.++..+|.++...|++++|+.+|++++.+.+... ..+....++..+|.++...|+++
T Consensus 77 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 77 VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH
Confidence 6678888888888888888888888888888533210 12334578899999999999999
Q ss_pred HHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHc-ccCHH
Q 022992 170 KSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMD-EEDIA 248 (289)
Q Consensus 170 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~-~~d~~ 248 (289)
+|+.+|++++..... ....+..+|.++...|+++.|...|++++++.|... .....++..+. .|+.+
T Consensus 157 ~A~~~~~~a~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~l~~~~~~~g~~~ 224 (258)
T 3uq3_A 157 NAVKAYTEMIKRAPE-------DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV-----RAYIRKATAQIAVKEYA 224 (258)
T ss_dssp HHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhcCcc-------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHH-----HHHHHHHHHHHHHhhHH
Confidence 999999999854322 234577889999999999999999999998876642 33555666553 56643
Q ss_pred ----HHHHHHHhccccCCCchhHHHHHHHHHHhc
Q 022992 249 ----KFTDVVKEFDSMTPLDPWKTTLLLRVKEKL 278 (289)
Q Consensus 249 ----~~~~al~~~~~~~~~d~~~~~~~~~~~~~~ 278 (289)
.++.+++..+... ..|.+..++..+.+.+
T Consensus 225 ~A~~~~~~a~~~~~~~~-~~p~~~~~~~~l~~~~ 257 (258)
T 3uq3_A 225 SALETLDAARTKDAEVN-NGSSAREIDQLYYKAS 257 (258)
T ss_dssp HHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhChhhc-CCCchHHHHHHHHHhh
Confidence 3333333332222 2277777777776653
No 21
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.76 E-value=3e-16 Score=130.51 Aligned_cols=204 Identities=10% Similarity=0.135 Sum_probs=165.6
Q ss_pred hhHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHHHHHHHHhcC-CHHH
Q 022992 6 ARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKA-------------ANSFKLAKSWDKAGATYVKLANCHLKLE-SKHE 71 (289)
Q Consensus 6 ~~a~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A-------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~ 71 (289)
.+|..+...|...++. ++|++|..+|.++ |.+|...|++++|+.++.+++++....+ +...
T Consensus 3 ~~a~~~~~~g~~~~~~-----~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 77 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKA-----RQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKV 77 (258)
T ss_dssp HHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred hHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHH
Confidence 3566666666666552 6888888888876 5678899999999999999999988764 5566
Q ss_pred HHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHh------cC--------------CHHHHHHHHHHHHHHHHhcCCHHH
Q 022992 72 AAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCD------IG--------------RLSMAARYYKEIAELYESEHNIEQ 130 (289)
Q Consensus 72 aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~------~g--------------~~~~~a~~l~~la~~~~~~g~~~~ 130 (289)
.+.++..+|.++... ++++|+.++++++.+.+. .| .....+.++..+|.++...|++++
T Consensus 78 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 78 ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHH
Confidence 688999999999877 999999999999984221 11 233456788999999999999999
Q ss_pred HHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHH
Q 022992 131 TIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVV 210 (289)
Q Consensus 131 A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~ 210 (289)
|+.+|++++++.+.. ..++..+|.++...|++++|+.+|++++..... ....+..+|.++...|++.
T Consensus 158 A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-------~~~~~~~l~~~~~~~g~~~ 224 (258)
T 3uq3_A 158 AVKAYTEMIKRAPED------ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-------FVRAYIRKATAQIAVKEYA 224 (258)
T ss_dssp HHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhcCccc------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-------HHHHHHHHHHHHHHHhhHH
Confidence 999999999986643 368899999999999999999999999854321 2345678899999999999
Q ss_pred HHHHHHHHHhhcCCCCC
Q 022992 211 AITNALERYQDMDPTFS 227 (289)
Q Consensus 211 ~A~~~~~~~~~~~~~~~ 227 (289)
.|...|++++++.+.+.
T Consensus 225 ~A~~~~~~a~~~~~~~~ 241 (258)
T 3uq3_A 225 SALETLDAARTKDAEVN 241 (258)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhc
Confidence 99999999998875443
No 22
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.75 E-value=5.9e-16 Score=124.57 Aligned_cols=151 Identities=11% Similarity=0.068 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcC-CH
Q 022992 31 DAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIG-RL 108 (289)
Q Consensus 31 ~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g-~~ 108 (289)
.....+...|.++...|++++|..+|.+++++++..+++...+.++.++|.+|... ++++|+.++++++.++...+ ++
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 103 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP 103 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence 34567778899999999999999999999999999999999999999999999877 99999999999999999999 66
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992 109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ 181 (289)
Q Consensus 109 ~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 181 (289)
...+.++.++|.++...|++++|+.++++++.+.+..+.+...+.++..+|.++...|++++|+.++++++..
T Consensus 104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999988888888889999999999999999999999999744
No 23
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.74 E-value=1.5e-16 Score=136.74 Aligned_cols=194 Identities=12% Similarity=-0.027 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHH
Q 022992 34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAA 112 (289)
Q Consensus 34 ~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a 112 (289)
..+...+..+...|++++|.+.+.++++..............+..+|.++... ++++|+.++++|+.+.....+....+
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34445567778899999999999999987654434445566677788888776 99999999999999988877888889
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccch-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccc
Q 022992 113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTS-ANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG 191 (289)
Q Consensus 113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 191 (289)
.++.++|.+|...|++++|+.+|++|+++++..+.... ...++.++|.++..+|+|++|+.+|++++......+ ..+.
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~-~~~~ 234 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN-SMAL 234 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-BCSS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC-cHHH
Confidence 99999999999999999999999999999876654333 337899999999999999999999999985543221 1233
Q ss_pred hhhHHHHHHHHHHccCCHHHH-HHHHHHHhhcCCCCCC
Q 022992 192 VKGHLLNAGICQLCKGDVVAI-TNALERYQDMDPTFSG 228 (289)
Q Consensus 192 ~~~~~~~~~~~~l~~gd~~~A-~~~~~~~~~~~~~~~~ 228 (289)
....+.++|.++...|++++| ...+++++.+...+..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~ 272 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCc
Confidence 456788899999999999999 8889998876655553
No 24
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.73 E-value=3.3e-16 Score=134.52 Aligned_cols=195 Identities=12% Similarity=-0.004 Sum_probs=158.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHH
Q 022992 32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM 110 (289)
Q Consensus 32 A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~ 110 (289)
-...+...+..+...|++++|...+.++.+......+....+..+..+|.++... ++++|+.++++|+.+....++...
T Consensus 74 ~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 153 (293)
T 3u3w_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTH
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHH
Confidence 3444555566777889999999999999885432222233356677789998776 999999999999998888888888
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-CccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccc
Q 022992 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE-EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLK 189 (289)
Q Consensus 111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 189 (289)
.+.++.++|.+|...|++++|+.+|++|+++++.. +.......++.++|.++..+|+|++|+.++++++........ .
T Consensus 154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~-~ 232 (293)
T 3u3w_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS-M 232 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB-C
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc-H
Confidence 89999999999999999999999999999998876 556667789999999999999999999999999865433322 2
Q ss_pred cchhhHHHHHHHHHHccC-CHHHHHHHHHHHhhcCCCCC
Q 022992 190 YGVKGHLLNAGICQLCKG-DVVAITNALERYQDMDPTFS 227 (289)
Q Consensus 190 ~~~~~~~~~~~~~~l~~g-d~~~A~~~~~~~~~~~~~~~ 227 (289)
+.....+.++|.++...| ++++|...+++++.+....+
T Consensus 233 ~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~ 271 (293)
T 3u3w_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILE 271 (293)
T ss_dssp TTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 334567889999999999 57999999999987655443
No 25
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.72 E-value=3.4e-16 Score=124.58 Aligned_cols=169 Identities=14% Similarity=0.123 Sum_probs=144.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHH
Q 022992 32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM 110 (289)
Q Consensus 32 A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~ 110 (289)
-...|...|.+|...|++++|+.+|.+++++.... ..++..+|.+|... ++++|+.++.+++...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~----- 72 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN------VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS----- 72 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh-----
Confidence 35678899999999999999999999999885432 56888999999877 9999999999998876543
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccccc
Q 022992 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKY 190 (289)
Q Consensus 111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 190 (289)
..++..+|.++...++++.|+..+.+++.+.+.. ..++..+|.++..+|++++|++.|++++...+.
T Consensus 73 -~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~------~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~------ 139 (184)
T 3vtx_A 73 -AEAYYILGSANFMIDEKQAAIDALQRAIALNTVY------ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG------ 139 (184)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch------
Confidence 4578899999999999999999999999986653 257889999999999999999999999855322
Q ss_pred chhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992 191 GVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT 225 (289)
Q Consensus 191 ~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~ 225 (289)
....+.++|.++..+|++++|...|+++++++|.
T Consensus 140 -~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 140 -FIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred -hhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence 2346788999999999999999999999988764
No 26
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.72 E-value=1.1e-15 Score=123.04 Aligned_cols=176 Identities=13% Similarity=0.069 Sum_probs=142.3
Q ss_pred HcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 022992 45 LAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYE 123 (289)
Q Consensus 45 ~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~ 123 (289)
..|++++|...+... .+++...+.++..+|.++... ++++|+.++++++.++...++....+.++.++|.++.
T Consensus 4 ~~g~~~~A~~~~~~~------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 77 (203)
T 3gw4_A 4 EAHDYALAERQAQAL------LAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVER 77 (203)
T ss_dssp ---CHHHHHHHHHHH------HTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHh------cCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 356666666633222 234445678899999999776 9999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHHHhccC-ccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHH
Q 022992 124 SEHNIEQTIVFFEKAADMFQNEE-VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGIC 202 (289)
Q Consensus 124 ~~g~~~~A~~~y~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 202 (289)
..|++++|+.+|++++++++..+ .+.....++..+|.++..+|++++|+.++++++......+. .......+..+|.+
T Consensus 78 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~ 156 (203)
T 3gw4_A 78 MAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD-QVAIACAFRGLGDL 156 (203)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHH
Confidence 99999999999999999999887 44477889999999999999999999999999754322211 22233456778999
Q ss_pred HHccCCHHHHHHHHHHHhhcCCCCC
Q 022992 203 QLCKGDVVAITNALERYQDMDPTFS 227 (289)
Q Consensus 203 ~l~~gd~~~A~~~~~~~~~~~~~~~ 227 (289)
+...|++++|...+++++++.+..+
T Consensus 157 ~~~~g~~~~A~~~~~~al~~~~~~~ 181 (203)
T 3gw4_A 157 AQQEKNLLEAQQHWLRARDIFAELE 181 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCcCHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999987655544
No 27
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.72 E-value=1.4e-15 Score=117.01 Aligned_cols=159 Identities=12% Similarity=0.091 Sum_probs=138.0
Q ss_pred cCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992 66 LESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (289)
Q Consensus 66 ~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~ 144 (289)
.|++...+.++..+|.++... ++++|+.++++++.+.+..+++...+.++..+|.++...|++++|+.+|++++++.+.
T Consensus 2 ~~d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 81 (164)
T 3ro3_A 2 PGSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 81 (164)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 467888899999999999777 9999999999999999999999999999999999999999999999999999999998
Q ss_pred cCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCC
Q 022992 145 EEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDP 224 (289)
Q Consensus 145 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~ 224 (289)
.+++.....++..+|.++...|++++|+.++++++......+. .......+..++.++...|++..|...+++++++.+
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 82 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD-RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred hCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccc-hHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 8888888889999999999999999999999999754322211 222344567789999999999999999999887654
Q ss_pred C
Q 022992 225 T 225 (289)
Q Consensus 225 ~ 225 (289)
.
T Consensus 161 ~ 161 (164)
T 3ro3_A 161 E 161 (164)
T ss_dssp T
T ss_pred H
Confidence 4
No 28
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.72 E-value=2.8e-16 Score=129.24 Aligned_cols=193 Identities=12% Similarity=-0.023 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 022992 35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAAR 113 (289)
Q Consensus 35 ~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~ 113 (289)
.+...|.++...|++++|+..|.++++..... ..++..+|.++... ++++|+.+|++++++.+.. +.
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~------~~ 74 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKENPQD------PEALYWLARTQLKLGLVNPALENGKTLVARTPRY------LG 74 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HH
Confidence 45677888999999999999999999774432 55788899999777 9999999999999987643 34
Q ss_pred HHHHHHHHHHhc-----------CCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992 114 YYKEIAELYESE-----------HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS 182 (289)
Q Consensus 114 ~l~~la~~~~~~-----------g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 182 (289)
++.++|.++... |++++|+..|++++++.+.. ..++..+|.++..+|++++|+..|++++...
T Consensus 75 a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 148 (217)
T 2pl2_A 75 GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY------APLHLQRGLVYALLGERDKAEASLKQALALE 148 (217)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence 889999999999 99999999999999986643 3578999999999999999999999998553
Q ss_pred hhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccCHHHHHHHHHhcccc
Q 022992 183 LNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSM 260 (289)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d~~~~~~al~~~~~~ 260 (289)
. ....+.++|.++...|++++|...|++++++.|... .....++..+. ....+.+|+..|+.+
T Consensus 149 -~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~-----~~~~~la~~~~--~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 149 -D-------TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDL-----DLRVRYASALL--LKGKAEEAARAAALE 211 (217)
T ss_dssp -C-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH-----HHHHHHHHHHT--C--------------
T ss_pred -c-------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-----HHHHHHHHHHH--HccCHHHHHHHHHHH
Confidence 2 234567889999999999999999999999887753 33455565553 233445555555544
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.72 E-value=1.3e-16 Score=140.43 Aligned_cols=212 Identities=10% Similarity=0.028 Sum_probs=153.9
Q ss_pred CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHH
Q 022992 27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA 91 (289)
Q Consensus 27 ~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A 91 (289)
|++++|..+|.++ |.+|...|++++|+.+|.+++++.... ..++..+|.+|... ++++|
T Consensus 79 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A 152 (365)
T 4eqf_A 79 GDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNN------LKALMALAVSYTNTSHQQDA 152 (365)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHccccHHHH
Confidence 6888888888877 567888999999999999999874322 55788889999777 99999
Q ss_pred HHHHHHHHHHHHhcCCHH----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcC
Q 022992 92 ISCLEQAVNMFCDIGRLS----MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQ 167 (289)
Q Consensus 92 ~~~~~~A~~~~~~~g~~~----~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 167 (289)
+.+|++++.+.+...... +.+.++..+|.++...|++++|+.+|++++++.+.... ..++..+|.++...|+
T Consensus 153 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~~l~~~~~~~g~ 228 (365)
T 4eqf_A 153 CEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID----PDLQTGLGVLFHLSGE 228 (365)
T ss_dssp HHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCC----HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccC----HHHHHHHHHHHHHCCC
Confidence 999999999877654322 34566777899999999999999999999998654222 3578899999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHc-ccC
Q 022992 168 YHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMD-EED 246 (289)
Q Consensus 168 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~-~~d 246 (289)
+++|+.+|++++..... ....+..+|.++...|++.+|...|++++++.|.. ......++..+. .|+
T Consensus 229 ~~~A~~~~~~al~~~p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 229 FNRAIDAFNAALTVRPE-------DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF-----IRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-----hHHHHHHHHHHHHCCC
Confidence 99999999999854322 23457788999999999999999999999987764 244556666663 566
Q ss_pred H----HHHHHHHHhcccc
Q 022992 247 I----AKFTDVVKEFDSM 260 (289)
Q Consensus 247 ~----~~~~~al~~~~~~ 260 (289)
. ..++++++..+..
T Consensus 297 ~~~A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 297 YREAVSNFLTALSLQRKS 314 (365)
T ss_dssp CHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhCccc
Confidence 3 5666666665543
No 30
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.72 E-value=4.3e-14 Score=124.81 Aligned_cols=225 Identities=10% Similarity=-0.012 Sum_probs=168.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCH--HHH
Q 022992 35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL--SMA 111 (289)
Q Consensus 35 ~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~--~~~ 111 (289)
.+...+.++...|++++|...+.+++.+.+..+++...+.++..+|.++... ++++|+.++++++.+....+.. ...
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 134 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 134 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence 3444467788899999999999999999999999999999999999999776 9999999999999999988876 667
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccc
Q 022992 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG 191 (289)
Q Consensus 112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 191 (289)
+.++.++|.++...|++++|..++++++++.+..+.+. ...++..+|.++...|++++|..+++++.......+.....
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~ 213 (373)
T 1hz4_A 135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDW 213 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhH
Confidence 88999999999999999999999999999988876655 44788999999999999999999999997543221110000
Q ss_pred hhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-cccCH----HHHHHHHHhccccC
Q 022992 192 VKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASM-DEEDI----AKFTDVVKEFDSMT 261 (289)
Q Consensus 192 ~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~-~~~d~----~~~~~al~~~~~~~ 261 (289)
........+.+++..|++..|...++++....+.-. .........++..+ ..|+. ..+++++...+..+
T Consensus 214 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~ 287 (373)
T 1hz4_A 214 ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN-HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLR 287 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTC-GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcc-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc
Confidence 000011223446789999999999998876554321 11112234455544 36665 34455555444433
No 31
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.71 E-value=1.9e-15 Score=130.19 Aligned_cols=248 Identities=12% Similarity=0.026 Sum_probs=184.9
Q ss_pred HhhHHHHHHHHHHhhcc-C--------CCCC-CCHHHHHHHHHHH--------------HHHHHHcC-CHHHHHHHHHHH
Q 022992 5 IARAEEFEKKAEKKLNG-W--------GLFG-SKYEDAADLFDKA--------------ANSFKLAK-SWDKAGATYVKL 59 (289)
Q Consensus 5 ~~~a~~~~~~A~~~~k~-~--------~~~~-~~~~~A~~~~~~A--------------~~~~~~~g-~~~~A~~~~~~a 59 (289)
..+|.+++.++-+.-.. . .++. +++++|...+.++ |.++...| ++++|..+|.++
T Consensus 38 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a 117 (330)
T 3hym_B 38 FKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKA 117 (330)
T ss_dssp HHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 55677777766544331 1 1123 7888888888776 45677788 888888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022992 60 ANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKA 138 (289)
Q Consensus 60 ~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A 138 (289)
++..... ..++..+|.++... ++++|+.++++++.+.+.... .+..+|.++...|++++|+.+|+++
T Consensus 118 ~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~a 185 (330)
T 3hym_B 118 TTLEKTY------GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHL------PMLYIGLEYGLTNNSKLAERFFSQA 185 (330)
T ss_dssp HTTCTTC------THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSH------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhCCcc------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHH------HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8764332 34677888888766 999999999999998766443 6777999999999999999999999
Q ss_pred HHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccc--ccchhhHHHHHHHHHHccCCHHHHHHHH
Q 022992 139 ADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLL--KYGVKGHLLNAGICQLCKGDVVAITNAL 216 (289)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~l~~gd~~~A~~~~ 216 (289)
+++.+.. ..++..+|.++...|++++|+.+|++++......+.. .......+..+|.++...|+++.|...+
T Consensus 186 l~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (330)
T 3hym_B 186 LSIAPED------PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH 259 (330)
T ss_dssp HTTCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhCCCC------hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9886543 3678999999999999999999999998554221110 0112346778899999999999999999
Q ss_pred HHHhhcCCCCCCchHHHHHHHHHHHHc-ccCHHHHHHHHHhccccCCCchhHHHHHHHHHHhc
Q 022992 217 ERYQDMDPTFSGTREYRLLSDIAASMD-EEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKL 278 (289)
Q Consensus 217 ~~~~~~~~~~~~~~e~~~l~~l~~a~~-~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~~ 278 (289)
++++++.|... .....++..+. .|+ +.+|+..|.....++|.+...+..+...+
T Consensus 260 ~~a~~~~~~~~-----~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 260 RQALVLIPQNA-----STYSAIGYIHSLMGN---FENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHSTTCS-----HHHHHHHHHHHHHTC---HHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHhhCccch-----HHHHHHHHHHHHhcc---HHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 99998877643 34555666553 444 56677777777778888888888887766
No 32
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.71 E-value=4e-15 Score=125.01 Aligned_cols=233 Identities=11% Similarity=0.029 Sum_probs=160.8
Q ss_pred HcCCHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 022992 45 LAKSWDKAGATYVKLANCHLKLE--SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI--GRLSMAARYYKEIA 119 (289)
Q Consensus 45 ~~g~~~~A~~~~~~a~~~~~~~~--~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~--g~~~~~a~~l~~la 119 (289)
..|++++|..+|.+|++++.+.. +....+.++..+|.+|... ++++|+.++++++.+.... ++....+.++..+|
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 35666777777777777776543 3356678899999999777 9999999999999999887 77778899999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHhccCc--cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhc-cccccchhhHH
Q 022992 120 ELYESEHNIEQTIVFFEKAADMFQNEEV--TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN-NLLKYGVKGHL 196 (289)
Q Consensus 120 ~~~~~~g~~~~A~~~y~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~ 196 (289)
.++...|++++|+.+|++++++++..+. ......++..+|.++..+|++++|+.+|++++...... +.........+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999999999876522 24567889999999999999999999999998542111 01111234567
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhcCCC------CCCchHHHHHHHHHHHHc----ccCHHHHHHHHHhccccCCCchh
Q 022992 197 LNAGICQLCKGDVVAITNALERYQDMDPT------FSGTREYRLLSDIAASMD----EEDIAKFTDVVKEFDSMTPLDPW 266 (289)
Q Consensus 197 ~~~~~~~l~~gd~~~A~~~~~~~~~~~~~------~~~~~e~~~l~~l~~a~~----~~d~~~~~~al~~~~~~~~~d~~ 266 (289)
..+|.++...|++++|...+++++.+.+. ....... ...+..... ......+..+...+..+....|.
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPI--WMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCH--HHHHHHHHHTTCCCCC------------CCCCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHH--HHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHH
Confidence 78899999999999999999998775221 1111111 111111111 22234566666666666666666
Q ss_pred HHHHHHHHHHhcc
Q 022992 267 KTTLLLRVKEKLK 279 (289)
Q Consensus 267 ~~~~~~~~~~~~~ 279 (289)
....+..+...+.
T Consensus 251 ~~~~~~~la~~~~ 263 (283)
T 3edt_B 251 VNTTLRSLGALYR 263 (283)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665543
No 33
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.71 E-value=8e-16 Score=136.62 Aligned_cols=225 Identities=16% Similarity=0.176 Sum_probs=115.2
Q ss_pred CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHH
Q 022992 27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA 91 (289)
Q Consensus 27 ~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A 91 (289)
|++++|...|.++ +.++...|++++|..+|.++++.... .+.++.++|.++... ++++|
T Consensus 115 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A 188 (388)
T 1w3b_A 115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN------FAVAWSNLGCVFNAQGEIWLA 188 (388)
T ss_dssp SCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHTTTCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHH
Confidence 5666666666554 34455566666666666666554211 133455555555444 66666
Q ss_pred HHHHHHHHHHHHhc--------------CCHHH--------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 022992 92 ISCLEQAVNMFCDI--------------GRLSM--------------AARYYKEIAELYESEHNIEQTIVFFEKAADMFQ 143 (289)
Q Consensus 92 ~~~~~~A~~~~~~~--------------g~~~~--------------~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~ 143 (289)
+.+|++++.+.+.. |++.. ...++.++|.++...|++++|+.+|++++++.+
T Consensus 189 ~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 268 (388)
T 1w3b_A 189 IHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 268 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 66666665543221 11000 123445555555555555555555555555433
Q ss_pred ccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcC
Q 022992 144 NEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMD 223 (289)
Q Consensus 144 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~ 223 (289)
.. ..++..+|.++...|++++|+.+|++++...+. ....+..++.++...|++++|...+++++++.
T Consensus 269 ~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 335 (388)
T 1w3b_A 269 HF------PDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-------HADSLNNLANIKREQGNIEEAVRLYRKALEVF 335 (388)
T ss_dssp SC------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC
T ss_pred CC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 21 134556666666666666666666666533211 12234455566666666666666666665554
Q ss_pred CCCCCchHHHHHHHHHHHHc-ccCHHHHHHHHHhccccCCCchhHHHHHHHHHHhc
Q 022992 224 PTFSGTREYRLLSDIAASMD-EEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKL 278 (289)
Q Consensus 224 ~~~~~~~e~~~l~~l~~a~~-~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~~ 278 (289)
|... .....++..+. .|+ +.+|+..|.....++|.+...+..+...+
T Consensus 336 p~~~-----~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~p~~~~a~~~lg~~~ 383 (388)
T 1w3b_A 336 PEFA-----AAHSNLASVLQQQGK---LQEALMHYKEAIRISPTFADAYSNMGNTL 383 (388)
T ss_dssp TTCH-----HHHHHHHHHHHTTTC---CHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred CCcH-----HHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHhHHHHH
Confidence 4321 22334444432 333 34455555555555666666665555443
No 34
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.70 E-value=1e-15 Score=135.98 Aligned_cols=192 Identities=14% Similarity=0.137 Sum_probs=135.3
Q ss_pred CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHH--------------hcCCHHHH------
Q 022992 27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHL--------------KLESKHEA------ 72 (289)
Q Consensus 27 ~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~--------------~~~~~~~a------ 72 (289)
|++++|...|.++ +.++...|++++|...|.+++++.. ..|++..+
T Consensus 149 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 228 (388)
T 1w3b_A 149 GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR 228 (388)
T ss_dssp SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6777777777665 3456667777777777777765422 11111111
Q ss_pred --------HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 022992 73 --------AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ 143 (289)
Q Consensus 73 --------a~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~ 143 (289)
..++.++|.+|... ++++|+.+|++++++.+.. ..++..+|.++...|++++|+.+|++++++.+
T Consensus 229 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 302 (388)
T 1w3b_A 229 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF------PDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT
T ss_pred HHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 23444555555444 6666666666666553321 34788999999999999999999999999865
Q ss_pred ccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcC
Q 022992 144 NEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMD 223 (289)
Q Consensus 144 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~ 223 (289)
.. ..++..+|.++...|++++|+..|++++...+ .....+..++.++...|++++|...|++++++.
T Consensus 303 ~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 303 TH------ADSLNNLANIKREQGNIEEAVRLYRKALEVFP-------EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp TC------HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT-------TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred cc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 43 35789999999999999999999999973211 123456788999999999999999999999988
Q ss_pred CCCCCchHHHHHHHHHHHH
Q 022992 224 PTFSGTREYRLLSDIAASM 242 (289)
Q Consensus 224 ~~~~~~~e~~~l~~l~~a~ 242 (289)
|.+. .....++..+
T Consensus 370 p~~~-----~a~~~lg~~~ 383 (388)
T 1w3b_A 370 PTFA-----DAYSNMGNTL 383 (388)
T ss_dssp TTCH-----HHHHHHHHHH
T ss_pred CCCH-----HHHHhHHHHH
Confidence 7653 3344555543
No 35
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.70 E-value=7.1e-16 Score=135.72 Aligned_cols=235 Identities=9% Similarity=0.023 Sum_probs=170.8
Q ss_pred HhhHHHHHHHHHHhhcc---------CCCCC-CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHH
Q 022992 5 IARAEEFEKKAEKKLNG---------WGLFG-SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLA 60 (289)
Q Consensus 5 ~~~a~~~~~~A~~~~k~---------~~~~~-~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~ 60 (289)
..+|..++.++-+.... ..++. |++++|...|.++ |.+|...|++++|..+|.+++
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 160 (365)
T 4eqf_A 81 LPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWI 160 (365)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence 56788888877655431 11233 9999999999998 567889999999999999999
Q ss_pred HHHHhcCCHH----HHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 022992 61 NCHLKLESKH----EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFF 135 (289)
Q Consensus 61 ~~~~~~~~~~----~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y 135 (289)
++........ +.+..+..+|.++... ++++|+.+|++++.+.+...+ +.++..+|.++...|++++|+.+|
T Consensus 161 ~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~~l~~~~~~~g~~~~A~~~~ 236 (365)
T 4eqf_A 161 KQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID----PDLQTGLGVLFHLSGEFNRAIDAF 236 (365)
T ss_dssp HHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCC----HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccC----HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9866432211 2355666778888877 999999999999998665333 458899999999999999999999
Q ss_pred HHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHH
Q 022992 136 EKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNA 215 (289)
Q Consensus 136 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~ 215 (289)
++++++.+.. ..++..+|.++...|++++|+.+|++++...+. ....+.++|.++...|++.+|...
T Consensus 237 ~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 237 NAALTVRPED------YSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-------FIRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------chHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999986543 358899999999999999999999999854321 234577889999999999999999
Q ss_pred HHHHhhcCCCCCCc-------hHHHHHHHHHHHHc-ccCHHHHHHHHHh
Q 022992 216 LERYQDMDPTFSGT-------REYRLLSDIAASMD-EEDIAKFTDVVKE 256 (289)
Q Consensus 216 ~~~~~~~~~~~~~~-------~e~~~l~~l~~a~~-~~d~~~~~~al~~ 256 (289)
|++++++.|..... ....+...++.++. .|+.+....+...
T Consensus 304 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 304 FLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999988765321 01245566666664 6777776666554
No 36
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.69 E-value=2.1e-15 Score=129.45 Aligned_cols=149 Identities=12% Similarity=0.026 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc-CCHHH
Q 022992 33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI-GRLSM 110 (289)
Q Consensus 33 ~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~-g~~~~ 110 (289)
+.++...+.++...+++++|+.+|.+++++....+++...+.++.++|.+|... ++++|+.+|++|+.++... ++...
T Consensus 115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 194 (293)
T 3u3w_A 115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF 194 (293)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhH
Confidence 334444566677788999999999999998777777778888999999999877 9999999999999999888 78889
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Q 022992 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE-QYHKSIEIYEEIARQ 181 (289)
Q Consensus 111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~ 181 (289)
.+.++.++|.++..+|++++|+.+|++|+++.+..++....+.++.++|.++..+| .+++|+++|++++..
T Consensus 195 ~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888888999999999999999 579999999999743
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.69 E-value=1.2e-15 Score=125.51 Aligned_cols=179 Identities=13% Similarity=0.093 Sum_probs=131.2
Q ss_pred HHHHHHHHhhccCCCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 022992 10 EFEKKAEKKLNGWGLFGSKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQA 75 (289)
Q Consensus 10 ~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~ 75 (289)
.++..+...++. |++++|+..|.++ |.++...|++++|+.+|.+++++.... ..+
T Consensus 7 ~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~------~~a 75 (217)
T 2pl2_A 7 NPLRLGVQLYAL-----GRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY------LGG 75 (217)
T ss_dssp HHHHHHHHHHHT-----TCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHH
T ss_pred HHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHH
Confidence 444444444442 5788888888776 678889999999999999999985432 446
Q ss_pred HHHHHHHHc-c-----------CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 022992 76 YVDAAHCYK-K-----------TSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ 143 (289)
Q Consensus 76 ~~~~a~~~~-~-----------~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~ 143 (289)
+..+|.++. . .++++|+.+|++++++.+.. +.++.++|.++...|++++|+.+|++|+++.
T Consensus 76 ~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 148 (217)
T 2pl2_A 76 YMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY------APLHLQRGLVYALLGERDKAEASLKQALALE- 148 (217)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-
Confidence 777787773 4 58999999999999987643 3588999999999999999999999999986
Q ss_pred ccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHH
Q 022992 144 NEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY 219 (289)
Q Consensus 144 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~ 219 (289)
. . ..++.++|.++..+|++++|+..|++++...+++ ...+.+++.++...|++++|...|++.
T Consensus 149 ~--~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 149 D--T----PEIRSALAELYLSMGRLDEALAQYAKALEQAPKD-------LDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp C--C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHTC--------------
T ss_pred c--c----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 2 1 3578999999999999999999999998553222 245677889999999999999888764
No 38
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.68 E-value=9.7e-14 Score=122.55 Aligned_cols=225 Identities=10% Similarity=-0.060 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHH
Q 022992 33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMA 111 (289)
Q Consensus 33 ~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~ 111 (289)
.+.....+.++...|++++|...+.+++.... .+++...+.++..+|.++... ++++|+.++++++.+.+..|++...
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 92 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 92 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 44555567778889999999999999998763 445566777888999998766 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCcc--chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccc
Q 022992 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT--TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLK 189 (289)
Q Consensus 112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 189 (289)
+.++.++|.++...|++++|+.+|++++.+.+..+.. .....++..+|.++...|++++|..++++++........ .
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~ 171 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP-Q 171 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG-G
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc-H
Confidence 9999999999999999999999999999999877654 456678899999999999999999999999855433211 1
Q ss_pred cchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHH--HHHH-HHcccCHHHHHHHHHhcccc
Q 022992 190 YGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLS--DIAA-SMDEEDIAKFTDVVKEFDSM 260 (289)
Q Consensus 190 ~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~--~l~~-a~~~~d~~~~~~al~~~~~~ 260 (289)
. ....+..++.++...|++++|...++++..+.+............ .++. ....|+.+.....+......
T Consensus 172 ~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 244 (373)
T 1hz4_A 172 Q-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP 244 (373)
T ss_dssp G-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred H-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 1 234566788899999999999999999987654433221111111 1222 22578877666665554443
No 39
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.68 E-value=4.1e-15 Score=127.65 Aligned_cols=168 Identities=12% Similarity=0.057 Sum_probs=139.9
Q ss_pred HHHHHHHHHhhccCCCCCCCHHHHHHHHHHH--------------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCC
Q 022992 9 EEFEKKAEKKLNGWGLFGSKYEDAADLFDKA--------------------ANSFKLAKSWDKAGATYVKLANCHLKLES 68 (289)
Q Consensus 9 ~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A--------------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 68 (289)
..++.++...+.. ++|++|.+.+.++ +.++...|++++|+.+|.+++++.....+
T Consensus 76 ~~l~~~~~~~~~~-----~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 76 KQFKDQVIMLCKQ-----KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred HHHHHHHHHHHHh-----hhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 3444444444432 5777777777644 45567788999999999999998877777
Q ss_pred HHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q 022992 69 KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL-SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE 146 (289)
Q Consensus 69 ~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~-~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~ 146 (289)
....+.++.++|.+|... ++++|+.+|++|+.++...++. ...+.++.++|.++..+|++++|+.+|++|+++.+..+
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~ 230 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN 230 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
Confidence 777889999999999877 9999999999999998877654 34458999999999999999999999999999988777
Q ss_pred ccchHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHH
Q 022992 147 VTTSANQCKQKVAQYAAELEQYHKS-IEIYEEIARQ 181 (289)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~a~~~ 181 (289)
.....+.++.++|.++..+|++++| ..+|++++..
T Consensus 231 ~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 7777889999999999999999999 7789998743
No 40
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.67 E-value=1e-15 Score=147.06 Aligned_cols=166 Identities=13% Similarity=0.170 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHH
Q 022992 33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMA 111 (289)
Q Consensus 33 ~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~ 111 (289)
++.+...|.+|...|++++|+.+|++|+++.... +.++.++|.+|.+. ++++|+.+|++|+++.+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~------ 76 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF------AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF------ 76 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------
Confidence 4567788999999999999999999999985432 56899999999887 9999999999999986643
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccc
Q 022992 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG 191 (289)
Q Consensus 112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 191 (289)
+.++.++|.++..+|++++|+++|++|+++.+.. ..++.++|.++..+|++++|++.|++++.....
T Consensus 77 ~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~------~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~------- 143 (723)
T 4gyw_A 77 ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF------ADAHSNLASIHKDSGNIPEAIASYRTALKLKPD------- 143 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------
Confidence 5589999999999999999999999999986643 368999999999999999999999999855322
Q ss_pred hhhHHHHHHHHHHccCCHHHHHHHHHHHhhcC
Q 022992 192 VKGHLLNAGICQLCKGDVVAITNALERYQDMD 223 (289)
Q Consensus 192 ~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~ 223 (289)
....+.++|.++...|++.+|.+.+++++++.
T Consensus 144 ~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~ 175 (723)
T 4gyw_A 144 FPDAYCNLAHCLQIVCDWTDYDERMKKLVSIV 175 (723)
T ss_dssp CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred ChHHHhhhhhHHHhcccHHHHHHHHHHHHHhC
Confidence 23467889999999999999999999887653
No 41
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.66 E-value=7.1e-15 Score=128.92 Aligned_cols=180 Identities=13% Similarity=0.087 Sum_probs=101.9
Q ss_pred CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHH
Q 022992 27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA 91 (289)
Q Consensus 27 ~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A 91 (289)
|++++|..+|.++ |.++...|++++|..+|.+++++... ...++..+|.+|... ++++|
T Consensus 78 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~g~~~~A 151 (368)
T 1fch_A 78 GDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD------NQTALMALAVSFTNESLQRQA 151 (368)
T ss_dssp TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHH
Confidence 6777777777776 55677788888888888888776432 133555666666554 66666
Q ss_pred HHHHHHHHHHHHhcCCHHH---------------------------------------------HHHHHHHHHHHHHhcC
Q 022992 92 ISCLEQAVNMFCDIGRLSM---------------------------------------------AARYYKEIAELYESEH 126 (289)
Q Consensus 92 ~~~~~~A~~~~~~~g~~~~---------------------------------------------~a~~l~~la~~~~~~g 126 (289)
+.++++++.+.+....... .+.++..+|.++...|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g 231 (368)
T 1fch_A 152 CEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG 231 (368)
T ss_dssp HHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcC
Confidence 6666666554432211100 2345555566666556
Q ss_pred CHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHcc
Q 022992 127 NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCK 206 (289)
Q Consensus 127 ~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 206 (289)
++++|+.+|++++.+.+.. ..++..+|.++...|++++|+.+|++++.... .....+..+|.++...
T Consensus 232 ~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------~~~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 232 EYDKAVDCFTAALSVRPND------YLLWNKLGATLANGNQSEEAVAAYRRALELQP-------GYIRSRYNLGISCINL 298 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CcHHHHHHHHHHHHHC
Confidence 6666666666665553321 23555566666666666666666666553211 1112344555555556
Q ss_pred CCHHHHHHHHHHHhhcCCC
Q 022992 207 GDVVAITNALERYQDMDPT 225 (289)
Q Consensus 207 gd~~~A~~~~~~~~~~~~~ 225 (289)
|++..|...|++++.+.|.
T Consensus 299 g~~~~A~~~~~~al~~~~~ 317 (368)
T 1fch_A 299 GAHREAVEHFLEALNMQRK 317 (368)
T ss_dssp TCHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCC
Confidence 6666666666665555444
No 42
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.65 E-value=4.5e-15 Score=130.21 Aligned_cols=199 Identities=12% Similarity=0.047 Sum_probs=146.5
Q ss_pred CCCCHHHHHH-HHH------------------HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcc
Q 022992 25 FGSKYEDAAD-LFD------------------KAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK 85 (289)
Q Consensus 25 ~~~~~~~A~~-~~~------------------~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~ 85 (289)
|-++|++|++ .|. ..|.++...|++++|+.+|.++++.... ...++..+|.++..
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~ 110 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK------HMEAWQYLGTTQAE 110 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHH
Confidence 4467777776 544 4578899999999999999999987432 24578889999977
Q ss_pred C-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccch--------------
Q 022992 86 T-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTS-------------- 150 (289)
Q Consensus 86 ~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~-------------- 150 (289)
. ++++|+.+|++++.+.+.. ..++..+|.++...|++++|+.+|++++.+.+.......
T Consensus 111 ~g~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (368)
T 1fch_A 111 NEQELLAISALRRCLELKPDN------QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPS 184 (368)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC--------------
T ss_pred CcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHH
Confidence 7 9999999999999886542 457888899998889999999999888877654332221
Q ss_pred -------------------------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHH
Q 022992 151 -------------------------------ANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNA 199 (289)
Q Consensus 151 -------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 199 (289)
...++..+|.++...|++++|+.+|++++..... ....+..+
T Consensus 185 ~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-------~~~~~~~l 257 (368)
T 1fch_A 185 KRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-------DYLLWNKL 257 (368)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CHHHHHHH
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-------CHHHHHHH
Confidence 3467888999999999999999999999754321 13456778
Q ss_pred HHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHc-ccCH
Q 022992 200 GICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMD-EEDI 247 (289)
Q Consensus 200 ~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~-~~d~ 247 (289)
|.++...|++..|...|++++.+.|... .....++..+. .|+.
T Consensus 258 ~~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~l~~~~~~~g~~ 301 (368)
T 1fch_A 258 GATLANGNQSEEAVAAYRRALELQPGYI-----RSRYNLGISCINLGAH 301 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHCCCH
Confidence 8899999999999999999988876532 34555666553 5664
No 43
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.65 E-value=7.8e-15 Score=126.32 Aligned_cols=223 Identities=12% Similarity=0.056 Sum_probs=170.3
Q ss_pred HhhHHHHHHHHHHhhccC---------CCC-CC-CHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHH
Q 022992 5 IARAEEFEKKAEKKLNGW---------GLF-GS-KYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKL 59 (289)
Q Consensus 5 ~~~a~~~~~~A~~~~k~~---------~~~-~~-~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a 59 (289)
..+|..++.++-+.-... .++ .+ ++++|..+|.++ +.++...|++++|+.+|.++
T Consensus 72 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 151 (330)
T 3hym_B 72 ANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTA 151 (330)
T ss_dssp HHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 467777777776544311 112 26 899999999987 56788999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022992 60 ANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKA 138 (289)
Q Consensus 60 ~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A 138 (289)
++..... ...+..+|.+|... ++++|+.++++++.+.+.. ..++..+|.++...|++++|+.+|+++
T Consensus 152 ~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a 219 (330)
T 3hym_B 152 AQLMKGC------HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED------PFVMHEVGVVAFQNGEWKTAEKWFLDA 219 (330)
T ss_dssp HHHTTTC------SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhcccc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 9886542 23566689998777 9999999999999886543 468999999999999999999999999
Q ss_pred HHHHhccCcc---chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHH
Q 022992 139 ADMFQNEEVT---TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNA 215 (289)
Q Consensus 139 ~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~ 215 (289)
+++.+..+.. .....++..+|.++...|++++|+.+|++++..... ....+..+|.++...|++..|...
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~ 292 (330)
T 3hym_B 220 LEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ-------NASTYSAIGYIHSLMGNFENAVDY 292 (330)
T ss_dssp HHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-------CSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc-------chHHHHHHHHHHHHhccHHHHHHH
Confidence 9998765543 223468899999999999999999999999854321 234567889999999999999999
Q ss_pred HHHHhhcCCCCCCchHHHHHHHHHHHH--cccCHHHHH
Q 022992 216 LERYQDMDPTFSGTREYRLLSDIAASM--DEEDIAKFT 251 (289)
Q Consensus 216 ~~~~~~~~~~~~~~~e~~~l~~l~~a~--~~~d~~~~~ 251 (289)
|++++++.|... .....++.++ ..|+.+.+.
T Consensus 293 ~~~al~~~p~~~-----~~~~~l~~~~~~~~g~~~a~~ 325 (330)
T 3hym_B 293 FHTALGLRRDDT-----FSVTMLGHCIEMYIGDSEAYI 325 (330)
T ss_dssp HHTTTTTCSCCH-----HHHHHHHHHHHTTTTC-----
T ss_pred HHHHHccCCCch-----HHHHHHHHHHHHHhCchhccC
Confidence 999988876643 2344455544 366655443
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.65 E-value=1.3e-15 Score=128.25 Aligned_cols=239 Identities=14% Similarity=0.085 Sum_probs=170.6
Q ss_pred HHHHHHHHhhccCCCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 022992 10 EFEKKAEKKLNGWGLFGSKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQA 75 (289)
Q Consensus 10 ~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~ 75 (289)
.++..|...++. +++++|...|.++ +.+|...|++++|+.+|.++++. . +++...+.+
T Consensus 5 ~~~~~a~~~~~~-----~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~--~~~~~~~~~ 76 (272)
T 3u4t_A 5 VEFRYADFLFKN-----NNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-V--NATKAKSAD 76 (272)
T ss_dssp CHHHHHHHHHTT-----TCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-S--CTTTCCHHH
T ss_pred HHHHHHHHHHHh-----cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-c--CchhHHHHH
Confidence 344444444442 6788888888877 56888999999999999999982 2 344445677
Q ss_pred HHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHH
Q 022992 76 YVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQC 154 (289)
Q Consensus 76 ~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~ 154 (289)
+..+|.++... ++++|+.+|++++++.+... .++..+|.++...|++++|+.+|++++++.+. ...+
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~ 144 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL------DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT------DPKV 144 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT------HHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC------CHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCcccH------HHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC------cHHH
Confidence 89999999877 99999999999999876544 48999999999999999999999999987332 2357
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCC---HHHHHHHHHHHhhcCCCCCCch-
Q 022992 155 KQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGD---VVAITNALERYQDMDPTFSGTR- 230 (289)
Q Consensus 155 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd---~~~A~~~~~~~~~~~~~~~~~~- 230 (289)
+..+|......+++++|+.+|++++...... ...+...|.++...|+ +..|...+++++++....+...
T Consensus 145 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 217 (272)
T 3u4t_A 145 FYELGQAYYYNKEYVKADSSFVKVLELKPNI-------YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYK 217 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-------hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccch
Confidence 8899944444569999999999998543221 2345667888887787 7789999999887654333211
Q ss_pred --HHHHHHHHHHHHc-ccCHHHHHHHHHhccccCCCchhHHHHHHHHHHhc
Q 022992 231 --EYRLLSDIAASMD-EEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKL 278 (289)
Q Consensus 231 --e~~~l~~l~~a~~-~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~~ 278 (289)
-......++..+. .|+. .+|+..|+....++|.+......+....
T Consensus 218 ~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~al~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 218 DELIEANEYIAYYYTINRDK---VKADAAWKNILALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHCTTCHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCccHHHHHHHhhhhh
Confidence 1244555666553 5554 4555555556566677666666555443
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.65 E-value=3.4e-15 Score=133.36 Aligned_cols=223 Identities=7% Similarity=-0.001 Sum_probs=160.5
Q ss_pred CCHHHHHHHHHHH--------------HHHHHHcCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHH
Q 022992 27 SKYEDAADLFDKA--------------ANSFKLAKS-WDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNE 90 (289)
Q Consensus 27 ~~~~~A~~~~~~A--------------~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~ 90 (289)
+++++|+.+|.++ |.++...|+ +++|+.+|.+++++..+. ..+|.+.|.++... ++++
T Consensus 111 g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~------~~a~~~~g~~~~~~g~~~e 184 (382)
T 2h6f_A 111 ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN------YQVWHHRRVLVEWLRDPSQ 184 (382)
T ss_dssp CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCCTT
T ss_pred CChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHccCHHH
Confidence 5677777777776 456777785 888888888888775432 45777788888666 8888
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHH-hcCHH
Q 022992 91 AISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAE-LEQYH 169 (289)
Q Consensus 91 A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 169 (289)
|+.+|++|+++.+.+- .++.++|.++..+|++++|+.+|++++++.+.. ..+++++|.++.. .|.++
T Consensus 185 Al~~~~kal~ldP~~~------~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~------~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 185 ELEFIADILNQDAKNY------HAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN------NSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHHHHHHCTTCH------HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHHHHHHhCccCH------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCcch
Confidence 8888888888766543 488888888888899999999999998886653 2578888888888 55557
Q ss_pred HH-----HHHHHHHHHHHhhccccccchhhHHHHHHHHHHccC--CHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH
Q 022992 170 KS-----IEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKG--DVVAITNALERYQDMDPTFSGTREYRLLSDIAASM 242 (289)
Q Consensus 170 ~A-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~g--d~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~ 242 (289)
+| +.+|++++..... ....+++++.++...| ++.+|.+.+.+. +..+. +. ..+..++..+
T Consensus 253 eA~~~~el~~~~~Al~l~P~-------~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~---~~--~al~~La~~~ 319 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-------NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHS---SP--YLIAFLVDIY 319 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-------CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCC---CH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCC---CH--HHHHHHHHHH
Confidence 77 4788888754322 1235667777776666 678888888775 44433 22 3455566655
Q ss_pred c-cc-----CH-HHHHHHHHhcccc-CCCchhHHHHHHHHHHhccc
Q 022992 243 D-EE-----DI-AKFTDVVKEFDSM-TPLDPWKTTLLLRVKEKLKA 280 (289)
Q Consensus 243 ~-~~-----d~-~~~~~al~~~~~~-~~~d~~~~~~~~~~~~~~~~ 280 (289)
. .+ +. +.+.+|++.|..+ ..+||.....|..+...|..
T Consensus 320 ~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 320 EDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 3 22 22 2468999999999 78999999888877777654
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.64 E-value=7.2e-14 Score=116.20 Aligned_cols=212 Identities=11% Similarity=0.027 Sum_probs=163.3
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc
Q 022992 27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI 105 (289)
Q Consensus 27 ~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~ 105 (289)
.+.......+...|.++...|++++|..+|.++++.... ...++..+|.+|... ++++|++++++++.+.+..
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 104 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS------SADAHAALAVVFQTEMEPKLADEEYRKALASDSRN 104 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc
Confidence 566666888889999999999999999999999987432 256788899999777 9999999999999886532
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhc
Q 022992 106 GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (289)
Q Consensus 106 g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 185 (289)
..++..+|.++...|++++|+.+|++++. .+.......++..+|.++...|++++|+.+|++++.....
T Consensus 105 ------~~~~~~la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~- 173 (252)
T 2ho1_A 105 ------ARVLNNYGGFLYEQKRYEEAYQRLLEASQ----DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN- 173 (252)
T ss_dssp ------HHHHHHHHHHHHHTTCHHHHHHHHHHHTT----CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-
T ss_pred ------HHHHHHHHHHHHHHhHHHHHHHHHHHHHh----CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-
Confidence 45889999999999999999999999987 2222345578899999999999999999999999754321
Q ss_pred cccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-cccCHHHHHHHHHhccccCCCc
Q 022992 186 NLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASM-DEEDIAKFTDVVKEFDSMTPLD 264 (289)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~-~~~d~~~~~~al~~~~~~~~~d 264 (289)
....+..++.++...|++..|...+++++...|.. .+ ....++..+ ..|+.+.....++......+-+
T Consensus 174 ------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~ 242 (252)
T 2ho1_A 174 ------QPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN---AR--SLLLGIRLAKVFEDRDTAASYGLQLKRLYPGS 242 (252)
T ss_dssp ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCC---HH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred ------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HH--HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence 13356778889999999999999999998876542 22 233445444 4777766655555544444444
Q ss_pred hh
Q 022992 265 PW 266 (289)
Q Consensus 265 ~~ 266 (289)
+.
T Consensus 243 ~~ 244 (252)
T 2ho1_A 243 LE 244 (252)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 47
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.63 E-value=9.7e-14 Score=120.54 Aligned_cols=209 Identities=15% Similarity=0.077 Sum_probs=129.5
Q ss_pred HhhHHHHHHHHHHhhcc---------CCCCC-CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHH
Q 022992 5 IARAEEFEKKAEKKLNG---------WGLFG-SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLA 60 (289)
Q Consensus 5 ~~~a~~~~~~A~~~~k~---------~~~~~-~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~ 60 (289)
..+|..++.++-+.-.. ..++. |++++|...|.++ |.++...|++++|..+|.+++
T Consensus 19 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 98 (359)
T 3ieg_A 19 LADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVL 98 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 45666666666443321 01223 6777777777766 445666777777777777776
Q ss_pred HHHHhcCCHHHH---------HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHH
Q 022992 61 NCHLKLESKHEA---------AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQ 130 (289)
Q Consensus 61 ~~~~~~~~~~~a---------a~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~ 130 (289)
......++.... ...+...|.++... ++++|+.++++++...+.. ..++..+|.++...|++++
T Consensus 99 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 172 (359)
T 3ieg_A 99 KSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD------AELRELRAECFIKEGEPRK 172 (359)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHH
T ss_pred hcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHCCCHHH
Confidence 553200001111 11122235666555 8888888888888775532 3578899999999999999
Q ss_pred HHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccch-----hhHHHHHHHHHHc
Q 022992 131 TIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGV-----KGHLLNAGICQLC 205 (289)
Q Consensus 131 A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~~l~ 205 (289)
|+.+|++++.+.+.. ..++..+|.++...|++++|+..|++++......+...... .......+.++..
T Consensus 173 A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 246 (359)
T 3ieg_A 173 AISDLKAASKLKSDN------TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR 246 (359)
T ss_dssp HHHHHHHHHTTCSCC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999875432 35789999999999999999999999975432221100000 0001122445555
Q ss_pred cCCHHHHHHHHHHHhhcCCC
Q 022992 206 KGDVVAITNALERYQDMDPT 225 (289)
Q Consensus 206 ~gd~~~A~~~~~~~~~~~~~ 225 (289)
.|++..|...+++++...|.
T Consensus 247 ~~~~~~A~~~~~~~~~~~~~ 266 (359)
T 3ieg_A 247 DGRYTDATSKYESVMKTEPS 266 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCCS
T ss_pred cCCHHHHHHHHHHHHhcCCC
Confidence 56666666666666555444
No 48
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.63 E-value=7.9e-14 Score=121.13 Aligned_cols=247 Identities=16% Similarity=0.091 Sum_probs=176.5
Q ss_pred HhhHHHHHHHHHHhhccC---------CCCC-CCHHHHHHHHHHH-----------------------------HHHHHH
Q 022992 5 IARAEEFEKKAEKKLNGW---------GLFG-SKYEDAADLFDKA-----------------------------ANSFKL 45 (289)
Q Consensus 5 ~~~a~~~~~~A~~~~k~~---------~~~~-~~~~~A~~~~~~A-----------------------------~~~~~~ 45 (289)
..+|...+.++-+.-... .++. |++++|...|.++ +.++..
T Consensus 53 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 132 (359)
T 3ieg_A 53 SKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFD 132 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777776543311 1223 8888888888877 567888
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 022992 46 AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES 124 (289)
Q Consensus 46 ~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~ 124 (289)
.|++++|+.++.++++..... ..++..+|.++... ++++|+.++++++...+.. ..++..+|.++..
T Consensus 133 ~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~ 200 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVCVWD------AELRELRAECFIKEGEPRKAISDLKAASKLKSDN------TEAFYKISTLYYQ 200 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC------HHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Confidence 999999999999999875421 45788899999777 9999999999999875432 3589999999999
Q ss_pred cCCHHHHHHHHHHHHHHHhccCccch------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHH
Q 022992 125 EHNIEQTIVFFEKAADMFQNEEVTTS------ANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLN 198 (289)
Q Consensus 125 ~g~~~~A~~~y~~A~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 198 (289)
.|++++|+.+|++++++.+....... .......+|.++...|++++|+..|++++.....++ ......+..
T Consensus 201 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~ 277 (359)
T 3ieg_A 201 LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVA---EYTVRSKER 277 (359)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSH---HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch---HHHHHHHHH
Confidence 99999999999999998765432111 011234568899999999999999999985543221 112234566
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHc-ccCHHHHHHHHHhccccCCCchhHHHHHHHH
Q 022992 199 AGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMD-EEDIAKFTDVVKEFDSMTPLDPWKTTLLLRV 274 (289)
Q Consensus 199 ~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~-~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~ 274 (289)
+|.++...|++..|...+++++++.|... .....++..+. .|+.+ +|+..|.....++|.+......+
T Consensus 278 la~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~---~A~~~~~~a~~~~p~~~~~~~~l 346 (359)
T 3ieg_A 278 ICHCFSKDEKPVEAIRICSEVLQMEPDNV-----NALKDRAEAYLIEEMYD---EAIQDYEAAQEHNENDQQIREGL 346 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTTCHH---HHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCcccH-----HHHHHHHHHHHHcCCHH---HHHHHHHHHHhcCCCChHHHHHH
Confidence 78899999999999999999998866532 34556666653 66654 44444444444555544444333
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.63 E-value=1.3e-13 Score=111.92 Aligned_cols=207 Identities=11% Similarity=0.072 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHH
Q 022992 32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM 110 (289)
Q Consensus 32 A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~ 110 (289)
-...+...|.++...|++++|+.+|.++++..... ..++..+|.++... ++++|+.++++++.+.+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----- 75 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKN------ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS----- 75 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccc------hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----
Confidence 35567778889999999999999999999875432 45788889999776 9999999999999886532
Q ss_pred HHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccc
Q 022992 111 AARYYKEIAELYESE-HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLK 189 (289)
Q Consensus 111 ~a~~l~~la~~~~~~-g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 189 (289)
..++..+|.++... |++++|+.+|+++++ .+.......++..+|.++...|++++|+.+|++++.....
T Consensus 76 -~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----- 145 (225)
T 2vq2_A 76 -AEINNNYGWFLCGRLNRPAESMAYFDKALA----DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ----- 145 (225)
T ss_dssp -HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT----STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----
T ss_pred -hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----
Confidence 45889999999999 999999999999998 1222334568899999999999999999999999754321
Q ss_pred cchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCC-CCCCchHHHHHHHHHHHH-cccCHHHHHHHHHhccccCCCchh
Q 022992 190 YGVKGHLLNAGICQLCKGDVVAITNALERYQDMDP-TFSGTREYRLLSDIAASM-DEEDIAKFTDVVKEFDSMTPLDPW 266 (289)
Q Consensus 190 ~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~-~~~~~~e~~~l~~l~~a~-~~~d~~~~~~al~~~~~~~~~d~~ 266 (289)
....+..++.++...|++..|...+++++.+.| .. .+. ...+...+ ..|+.+......+......+-+|.
T Consensus 146 --~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 217 (225)
T 2vq2_A 146 --FPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQ---ADD--LLLGWKIAKALGNAQAAYEYEAQLQANFPYSEE 217 (225)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCC---HHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred --CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC---HHH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence 123567788899999999999999999988766 32 222 22333333 467766655555554444444433
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.62 E-value=5.5e-14 Score=118.85 Aligned_cols=201 Identities=13% Similarity=0.192 Sum_probs=152.5
Q ss_pred CCHHHHHHHHHHH------------HHHHHH----cCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcc----C
Q 022992 27 SKYEDAADLFDKA------------ANSFKL----AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK----T 86 (289)
Q Consensus 27 ~~~~~A~~~~~~A------------~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~----~ 86 (289)
+++++|..+|.++ |.+|.. .+++++|+.+|.++++. + ...++..+|.+|.. .
T Consensus 20 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~g~~~~ 91 (273)
T 1ouv_A 20 KDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----N----YSNGCHLLGNLYYSGQGVS 91 (273)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHTSSSC
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----C----CHHHHHHHHHHHhCCCCcc
Confidence 5788888877776 567888 99999999999999876 2 25678889999976 5
Q ss_pred -CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHH
Q 022992 87 -SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES----EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQY 161 (289)
Q Consensus 87 -~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~----~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~ 161 (289)
++++|+.+|++|++. + ...++.++|.++.. .+++++|+.+|++|++.. ...++.++|.+
T Consensus 92 ~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~ 155 (273)
T 1ouv_A 92 QNTNKALQYYSKACDL----K----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--------DGDGCTILGSL 155 (273)
T ss_dssp CCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHc----C----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--------cHHHHHHHHHH
Confidence 999999999999875 2 35689999999998 899999999999999852 13578899999
Q ss_pred HHH----hcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHc----cCCHHHHHHHHHHHhhcCCCCCCchHHH
Q 022992 162 AAE----LEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC----KGDVVAITNALERYQDMDPTFSGTREYR 233 (289)
Q Consensus 162 ~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~----~gd~~~A~~~~~~~~~~~~~~~~~~e~~ 233 (289)
+.. .+++++|+.+|++++.. + ....+..+|.++.. .+++..|...|+++++..+ . .
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~--~-------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-----~--~ 219 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL--K-------DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-----G--G 219 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT--T-------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-----H--H
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC--C-------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-----H--H
Confidence 998 99999999999999732 1 12456778899988 8999999999999987643 2 3
Q ss_pred HHHHHHHHHcccC--HHHHHHHHHhccccCCCchhH
Q 022992 234 LLSDIAASMDEED--IAKFTDVVKEFDSMTPLDPWK 267 (289)
Q Consensus 234 ~l~~l~~a~~~~d--~~~~~~al~~~~~~~~~d~~~ 267 (289)
....++..+..|. ...+.+|+..|.....++|..
T Consensus 220 a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 220 GCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 3555666664311 233344444444444444433
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.62 E-value=5.8e-15 Score=131.85 Aligned_cols=214 Identities=7% Similarity=0.030 Sum_probs=159.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-C-HHHHHHHHHHHHHHHHhcCCHHH
Q 022992 33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-S-SNEAISCLEQAVNMFCDIGRLSM 110 (289)
Q Consensus 33 ~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~-~~~A~~~~~~A~~~~~~~g~~~~ 110 (289)
.+.+...+.++...|++++|+.+|.+++.+.... ..++.+.|.++... + +++|+.+|++|+.+.++.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~------~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~----- 165 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN------YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN----- 165 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC-----
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccC------HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC-----
Confidence 4557778889999999999999999999885432 56888899999776 5 999999999999997764
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccccc
Q 022992 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKY 190 (289)
Q Consensus 111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 190 (289)
..++.++|.++..+|++++|+.+|++|+++.+.. ..++.++|.++..+|++++|+.+|++++.....
T Consensus 166 -~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~------~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~------ 232 (382)
T 2h6f_A 166 -YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN------YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR------ 232 (382)
T ss_dssp -HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT------
T ss_pred -HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------
Confidence 3489999999999999999999999999987654 368999999999999999999999999865322
Q ss_pred chhhHHHHHHHHHHc-cCCHHHH-----HHHHHHHhhcCCCCCCchHHHHHHHHHHHHc-ccCHHHHHHHHHhccccCCC
Q 022992 191 GVKGHLLNAGICQLC-KGDVVAI-----TNALERYQDMDPTFSGTREYRLLSDIAASMD-EEDIAKFTDVVKEFDSMTPL 263 (289)
Q Consensus 191 ~~~~~~~~~~~~~l~-~gd~~~A-----~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~-~~d~~~~~~al~~~~~~~~~ 263 (289)
...++++.|.++.. .|..+.| ..+|++++.+.|... .....++..+. .| ...+.+++..+..+ ..
T Consensus 233 -~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~-----~a~~~l~~ll~~~g-~~~~~~a~~~~~~~-~~ 304 (382)
T 2h6f_A 233 -NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNE-----SAWNYLKGILQDRG-LSKYPNLLNQLLDL-QP 304 (382)
T ss_dssp -CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCH-----HHHHHHHHHHTTTC-GGGCHHHHHHHHHH-TT
T ss_pred -CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHccC-ccchHHHHHHHHHh-cc
Confidence 23467788888877 5554666 588999999888754 23344444443 33 12233444444444 45
Q ss_pred chhHHHHHHHHHHhc
Q 022992 264 DPWKTTLLLRVKEKL 278 (289)
Q Consensus 264 d~~~~~~~~~~~~~~ 278 (289)
+|-+...+..+.+.+
T Consensus 305 ~p~~~~al~~La~~~ 319 (382)
T 2h6f_A 305 SHSSPYLIAFLVDIY 319 (382)
T ss_dssp TCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 554444444444333
No 52
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.61 E-value=2.6e-14 Score=131.17 Aligned_cols=197 Identities=9% Similarity=0.121 Sum_probs=157.2
Q ss_pred HHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHH
Q 022992 35 LFDKAANSFKLAKSW-DKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAA 112 (289)
Q Consensus 35 ~~~~A~~~~~~~g~~-~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a 112 (289)
.+...|.++...|++ ++|+.+|.+++++.... +.++..+|.+|... ++++|+.+|++|+++.+. .
T Consensus 104 ~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------~ 170 (474)
T 4abn_A 104 ALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL------VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-------K 170 (474)
T ss_dssp HHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-------H
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------H
Confidence 344457788889999 99999999999885432 56889999999777 999999999999988532 3
Q ss_pred HHHHHHHHHHHhc---------CCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHh--------cCHHHHHHHH
Q 022992 113 RYYKEIAELYESE---------HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL--------EQYHKSIEIY 175 (289)
Q Consensus 113 ~~l~~la~~~~~~---------g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~ 175 (289)
.++.++|.++... |++++|+.+|++|+++.+.. ..++..+|.++..+ |++++|+.+|
T Consensus 171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~ 244 (474)
T 4abn_A 171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD------GRSWYILGNAYLSLYFNTGQNPKISQQALSAY 244 (474)
T ss_dssp HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence 7999999999999 99999999999999987654 35789999999999 9999999999
Q ss_pred HHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccCHHHHHHHHH
Q 022992 176 EEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVK 255 (289)
Q Consensus 176 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d~~~~~~al~ 255 (289)
++++..... .......++++|.++...|++++|...|++++++.|... .....+...+. ....+.+|+.
T Consensus 245 ~~al~~~p~----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-----~a~~~l~~~~~--~lg~~~eAi~ 313 (474)
T 4abn_A 245 AQAEKVDRK----ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWP-----EPQQREQQLLE--FLSRLTSLLE 313 (474)
T ss_dssp HHHHHHCGG----GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHhCCC----cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHH--HHHHHHHHHH
Confidence 999855321 012345678899999999999999999999999887753 22334444432 2456788888
Q ss_pred hccccC
Q 022992 256 EFDSMT 261 (289)
Q Consensus 256 ~~~~~~ 261 (289)
.+..+.
T Consensus 314 ~~~~~~ 319 (474)
T 4abn_A 314 SKGKTK 319 (474)
T ss_dssp HTTTCC
T ss_pred Hhcccc
Confidence 877664
No 53
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.61 E-value=4.5e-14 Score=131.95 Aligned_cols=227 Identities=12% Similarity=0.048 Sum_probs=161.4
Q ss_pred CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHH
Q 022992 27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA 91 (289)
Q Consensus 27 ~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A 91 (289)
|++++|...|.++ +.+|...|++++|..+|.++.++... ...++..++.+|.+. ++++|
T Consensus 353 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A 426 (597)
T 2xpi_A 353 GEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ------FGPAWIGFAHSFAIEGEHDQA 426 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHH
Confidence 5666666655544 34566677777777777777665321 134666777777655 88888
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHH
Q 022992 92 ISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS 171 (289)
Q Consensus 92 ~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 171 (289)
+++|++++...+.. ..++..+|.++...|++++|+.+|++++++.+.. ..++..+|.++...|++++|
T Consensus 427 ~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A 494 (597)
T 2xpi_A 427 ISAYTTAARLFQGT------HLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD------PLLLNELGVVAFNKSDMQTA 494 (597)
T ss_dssp HHHHHHHHHTTTTC------SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCccc------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHhCCHHHH
Confidence 88888888775543 3478889999999999999999999999875542 25789999999999999999
Q ss_pred HHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHc-ccCHHHH
Q 022992 172 IEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMD-EEDIAKF 250 (289)
Q Consensus 172 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~-~~d~~~~ 250 (289)
+++|+++.......+.........+..++.++...|+++.|...|++++++.|... .....++..+. .|+.
T Consensus 495 ~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~~l~~~~~~~g~~--- 566 (597)
T 2xpi_A 495 INHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDA-----NVHTAIALVYLHKKIP--- 566 (597)
T ss_dssp HHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCH-----HHHHHHHHHHHHTTCH---
T ss_pred HHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh-----HHHHHHHHHHHHhCCH---
Confidence 99999998554321111111244677889999999999999999999988775432 34556666664 6654
Q ss_pred HHHHHhccccCCCchhHHHHHHHHHHhcc
Q 022992 251 TDVVKEFDSMTPLDPWKTTLLLRVKEKLK 279 (289)
Q Consensus 251 ~~al~~~~~~~~~d~~~~~~~~~~~~~~~ 279 (289)
++|...|+.+..++|.+...+..+.+.+.
T Consensus 567 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 567 GLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 44555555565667777777777766553
No 54
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.61 E-value=2.5e-13 Score=116.67 Aligned_cols=218 Identities=11% Similarity=0.017 Sum_probs=139.4
Q ss_pred hHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHH
Q 022992 7 RAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEA 72 (289)
Q Consensus 7 ~a~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~a 72 (289)
.+..++..|...++. +++++|..+|.++ +.++...|++++|..+|.++++.....
T Consensus 20 ~~~~~~~~a~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------ 88 (327)
T 3cv0_A 20 YHENPMEEGLSMLKL-----ANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD------ 88 (327)
T ss_dssp GSSCHHHHHHHHHHT-----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred hhHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC------
Confidence 344445555444442 4666666666665 556777788888888888877663211
Q ss_pred HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc-----------------------------CCHHH------------
Q 022992 73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI-----------------------------GRLSM------------ 110 (289)
Q Consensus 73 a~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~-----------------------------g~~~~------------ 110 (289)
..++..+|.++... ++++|+.++++++...+.. |++..
T Consensus 89 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 168 (327)
T 3cv0_A 89 IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN 168 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC
Confidence 33455555555444 6666666666655432211 11111
Q ss_pred --HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccc
Q 022992 111 --AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLL 188 (289)
Q Consensus 111 --~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 188 (289)
...++..+|.++...|++++|+.+|++++++.+.. ..++..+|.++...|++++|+.+|++++.....
T Consensus 169 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---- 238 (327)
T 3cv0_A 169 PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD------AQLWNKLGATLANGNRPQEALDAYNRALDINPG---- 238 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----
Confidence 24567788888888899999999999988875432 357788899999999999999999888744221
Q ss_pred ccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCch-------HHHHHHHHHHHHc-ccCHH
Q 022992 189 KYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTR-------EYRLLSDIAASMD-EEDIA 248 (289)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~-------e~~~l~~l~~a~~-~~d~~ 248 (289)
....+..++.++...|++..|...|++++.+.|...... .......++..+. .|+.+
T Consensus 239 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 303 (327)
T 3cv0_A 239 ---YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPD 303 (327)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHH
T ss_pred ---CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHH
Confidence 123466778888888999999999988888776632111 2344555665553 55543
No 55
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.60 E-value=1.9e-13 Score=123.10 Aligned_cols=134 Identities=14% Similarity=0.102 Sum_probs=94.2
Q ss_pred HHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHH
Q 022992 80 AHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKV 158 (289)
Q Consensus 80 a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l 158 (289)
|.++... ++++|+.+|++++.+.+. ...++..+|.++...|++++|+.+|++++++.+.. ..++..+
T Consensus 150 a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l 217 (450)
T 2y4t_A 150 ALNAFGSGDYTAAIAFLDKILEVCVW------DAELRELRAECFIKEGEPRKAISDLKAASKLKNDN------TEAFYKI 217 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC------HHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Confidence 4444443 666777777766665432 23467888999999999999999999999886543 3678999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhccccccc-----hhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992 159 AQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG-----VKGHLLNAGICQLCKGDVVAITNALERYQDMDPT 225 (289)
Q Consensus 159 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~ 225 (289)
|.++...|++++|+..|++++............ ........+.++...|++.+|...|++++.+.|.
T Consensus 218 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~ 289 (450)
T 2y4t_A 218 STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS 289 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 999999999999999999997443222110000 0001123367777889999999999988887665
No 56
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.60 E-value=2.4e-13 Score=122.50 Aligned_cols=248 Identities=16% Similarity=0.098 Sum_probs=175.3
Q ss_pred HhhHHHHHHHHHHhhccC---------CCCC-CCHHHHHHHHHHH-----------------------------HHHHHH
Q 022992 5 IARAEEFEKKAEKKLNGW---------GLFG-SKYEDAADLFDKA-----------------------------ANSFKL 45 (289)
Q Consensus 5 ~~~a~~~~~~A~~~~k~~---------~~~~-~~~~~A~~~~~~A-----------------------------~~~~~~ 45 (289)
..+|...+.++-+.-... .+.. |++++|...|.++ +.++..
T Consensus 76 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 155 (450)
T 2y4t_A 76 SKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFG 155 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777765543211 1222 8888888888876 334778
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 022992 46 AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES 124 (289)
Q Consensus 46 ~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~ 124 (289)
.|++++|+.+|.++++.... ...++..+|.+|... ++++|+.+|++++...+.. ..++..+|.++..
T Consensus 156 ~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~ 223 (450)
T 2y4t_A 156 SGDYTAAIAFLDKILEVCVW------DAELRELRAECFIKEGEPRKAISDLKAASKLKNDN------TEAFYKISTLYYQ 223 (450)
T ss_dssp HTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC------HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Confidence 99999999999999986432 245788899999777 9999999999999986533 4689999999999
Q ss_pred cCCHHHHHHHHHHHHHHHhccCccchH------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHH
Q 022992 125 EHNIEQTIVFFEKAADMFQNEEVTTSA------NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLN 198 (289)
Q Consensus 125 ~g~~~~A~~~y~~A~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 198 (289)
.|++++|+.+|++++.+.+........ ......+|.++...|++++|+.+|++++.....++ ......+..
T Consensus 224 ~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~~~~~ 300 (450)
T 2y4t_A 224 LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIA---EYTVRSKER 300 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSH---HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcch---HHHHHHHHH
Confidence 999999999999999886643221110 11124459999999999999999999985432211 111235677
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHc-ccCHHHHHHHHHhccccCCCchhHHHHHHHHH
Q 022992 199 AGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMD-EEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVK 275 (289)
Q Consensus 199 ~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~-~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~ 275 (289)
++.++...|++..|...+++++.+.|... .....++.++. .|+.+. |+..|.....++|.+...+..+.
T Consensus 301 l~~~~~~~g~~~~A~~~~~~a~~~~p~~~-----~~~~~l~~~~~~~~~~~~---A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 301 ICHCFSKDEKPVEAIRVCSEVLQMEPDNV-----NALKDRAEAYLIEEMYDE---AIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTTCHHH---HHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccH-----HHHHHHHHHHHHhcCHHH---HHHHHHHHHHhCcchHHHHHHHH
Confidence 88899999999999999999988766532 44556776664 666544 44444444444444444443333
No 57
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.60 E-value=1.7e-14 Score=118.70 Aligned_cols=160 Identities=14% Similarity=0.130 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHH
Q 022992 34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAA 112 (289)
Q Consensus 34 ~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a 112 (289)
+.+...|.++...|++++|+.+|.+++++.... + ...+..+|.++... ++++|+.+|++++.+.+. ..
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~ 76 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQ-D----SVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN------LA 76 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS------HH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC-C----cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc------hH
Confidence 566778899999999999999999999886411 2 24566689999777 999999999999977543 45
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCcc-chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccc
Q 022992 113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT-TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG 191 (289)
Q Consensus 113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 191 (289)
.++..+|.++...|++++|+.+|++++++.+..... .....++..+|.++..+|++++|+..|++++...+. .+
T Consensus 77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~- 151 (228)
T 4i17_A 77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK----KW- 151 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH----HH-
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC----cc-
Confidence 689999999999999999999999999998764321 234467999999999999999999999999733111 00
Q ss_pred hhhHHHHHHHHHHccCCH
Q 022992 192 VKGHLLNAGICQLCKGDV 209 (289)
Q Consensus 192 ~~~~~~~~~~~~l~~gd~ 209 (289)
....+.++|.++...|+.
T Consensus 152 ~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 152 KTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 234677888888766543
No 58
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.60 E-value=1.6e-14 Score=119.17 Aligned_cols=161 Identities=17% Similarity=0.232 Sum_probs=92.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022992 40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI 118 (289)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~l 118 (289)
+.++...|++++|..+|.++++.... ...++..+|.++... ++++|+.++++++.+.+.. ..++..+
T Consensus 64 a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~ 131 (243)
T 2q7f_A 64 ANLLSSVNELERALAFYDKALELDSS------AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN------GDLFYML 131 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS------HHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCc------chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC------HHHHHHH
Confidence 45566666666666666666655321 134555566666544 6666666666666654322 2356666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHH
Q 022992 119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLN 198 (289)
Q Consensus 119 a~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 198 (289)
|.++...|++++|+.+|++++++.+.. ..++..+|.++...|++++|+.+|++++..... ....+..
T Consensus 132 a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~~~~ 198 (243)
T 2q7f_A 132 GTVLVKLEQPKLALPYLQRAVELNEND------TEARFQFGMCLANEGMLDEALSQFAAVTEQDPG-------HADAFYN 198 (243)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT-------CHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-------cHHHHHH
Confidence 666666666666666666666654322 235566666666666666666666666533211 1223455
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992 199 AGICQLCKGDVVAITNALERYQDMDPT 225 (289)
Q Consensus 199 ~~~~~l~~gd~~~A~~~~~~~~~~~~~ 225 (289)
++.++...|++..|...+++++++.|.
T Consensus 199 la~~~~~~~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 199 AGVTYAYKENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp HHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHccCcc
Confidence 566666666666666666666665544
No 59
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.59 E-value=1.4e-13 Score=126.69 Aligned_cols=204 Identities=12% Similarity=0.110 Sum_probs=157.5
Q ss_pred HhhHHHHHHHHHHhhc--------cCCCCC-CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHH
Q 022992 5 IARAEEFEKKAEKKLN--------GWGLFG-SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLAN 61 (289)
Q Consensus 5 ~~~a~~~~~~A~~~~k--------~~~~~~-~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~ 61 (289)
..+|...+.++-+.-. +..++. +++++|...|.++ |.++...|++++|...|.+++.
T Consensus 259 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 338 (537)
T 3fp2_A 259 LLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338 (537)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4567777777755432 112334 8888988888887 5667788999999999999988
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 022992 62 CHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAAD 140 (289)
Q Consensus 62 ~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~ 140 (289)
..... ..++..+|.++... ++++|+.++++++...+... .++..+|.++...|++++|+.+|+++++
T Consensus 339 ~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 339 LNPEN------VYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLP------EVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HCTTC------SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 75432 24677888888766 99999999999998866543 3788899999999999999999999999
Q ss_pred HHhccCccchHHHHHHHHHHHHHHh----------cCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHH
Q 022992 141 MFQNEEVTTSANQCKQKVAQYAAEL----------EQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVV 210 (289)
Q Consensus 141 ~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~ 210 (289)
+.+...........+..+|.++... |++++|+.+|++++..... ....+..+|.++...|++.
T Consensus 407 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-------~~~~~~~l~~~~~~~g~~~ 479 (537)
T 3fp2_A 407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-------SEQAKIGLAQLKLQMEKID 479 (537)
T ss_dssp HHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHH
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHhccHH
Confidence 9887665544444567788888888 9999999999999754321 2245677899999999999
Q ss_pred HHHHHHHHHhhcCCCCC
Q 022992 211 AITNALERYQDMDPTFS 227 (289)
Q Consensus 211 ~A~~~~~~~~~~~~~~~ 227 (289)
+|...|++++++.|...
T Consensus 480 ~A~~~~~~al~~~~~~~ 496 (537)
T 3fp2_A 480 EAIELFEDSAILARTMD 496 (537)
T ss_dssp HHHHHHHHHHHHC--CH
T ss_pred HHHHHHHHHHHhCCCcH
Confidence 99999999999887754
No 60
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.59 E-value=1.2e-13 Score=116.17 Aligned_cols=183 Identities=17% Similarity=0.105 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 022992 35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAAR 113 (289)
Q Consensus 35 ~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~ 113 (289)
.+...|..+...|++++|+..|.++++.+... .....++..+|.+|... ++++|+.+|++++..++.... ...
T Consensus 17 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~ 90 (261)
T 3qky_A 17 EAFERAMEFYNQGKYDRAIEYFKAVFTYGRTH---EWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR---VPQ 90 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCS---TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT---HHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch---hHH
Confidence 44456777778999999999999999875432 23366888999999777 999999999999999876543 457
Q ss_pred HHHHHHHHHHh--------cCCHHHHHHHHHHHHHHHhccCccchH-----------HHHHHHHHHHHHHhcCHHHHHHH
Q 022992 114 YYKEIAELYES--------EHNIEQTIVFFEKAADMFQNEEVTTSA-----------NQCKQKVAQYAAELEQYHKSIEI 174 (289)
Q Consensus 114 ~l~~la~~~~~--------~g~~~~A~~~y~~A~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~ 174 (289)
++..+|.++.. .|++++|+..|+++++.++........ ...+..+|.++...|+|++|+..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 89999999998 899999999999999998765432211 11128899999999999999999
Q ss_pred HHHHHHHHhhccccccchhhHHHHHHHHHHcc----------CCHHHHHHHHHHHhhcCCCCC
Q 022992 175 YEEIARQSLNNNLLKYGVKGHLLNAGICQLCK----------GDVVAITNALERYQDMDPTFS 227 (289)
Q Consensus 175 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------gd~~~A~~~~~~~~~~~~~~~ 227 (289)
|++++...+..+ .....++.+|.++... |++++|...|+++++..|...
T Consensus 171 ~~~~l~~~p~~~----~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 171 YEAVFDAYPDTP----WADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHCTTST----THHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHCCCCc----hHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 999986543221 1345677888888766 888999999999998877654
No 61
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.58 E-value=3.9e-13 Score=111.70 Aligned_cols=176 Identities=16% Similarity=0.085 Sum_probs=142.9
Q ss_pred CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHH
Q 022992 27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA 91 (289)
Q Consensus 27 ~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A 91 (289)
+++++|..+|.++ +.+|...|++++|..+|.++++.... ....+..+|.+|... ++++|
T Consensus 51 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~~~~A 124 (252)
T 2ho1_A 51 GNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR------NARVLNNYGGFLYEQKRYEEA 124 (252)
T ss_dssp TCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHH
T ss_pred CChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC------cHHHHHHHHHHHHHHhHHHHH
Confidence 5777777777766 56788999999999999999987432 245788889998776 99999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHH
Q 022992 92 ISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS 171 (289)
Q Consensus 92 ~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 171 (289)
+.++++++. .+.......++..+|.++...|++++|+.+|+++++..+.. ..++..+|.++...|++++|
T Consensus 125 ~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 125 YQRLLEASQ----DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ------PSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHHHHHHTT----CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHh----CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHcCCHHHH
Confidence 999999987 22333456789999999999999999999999999886542 35789999999999999999
Q ss_pred HHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992 172 IEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT 225 (289)
Q Consensus 172 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~ 225 (289)
+.+|++++.... .....+..++.++...|++.+|...++++.++.|.
T Consensus 195 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 195 RQYYDLFAQGGG-------QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHHHTTSC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCc-------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 999999863221 12234566778888999999999999999887665
No 62
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.57 E-value=1.9e-13 Score=125.91 Aligned_cols=249 Identities=13% Similarity=0.069 Sum_probs=176.8
Q ss_pred HhhHHHHHHHHHHhhccCCCCCCCHHH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022992 5 IARAEEFEKKAEKKLNGWGLFGSKYED----AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAA 80 (289)
Q Consensus 5 ~~~a~~~~~~A~~~~k~~~~~~~~~~~----A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a 80 (289)
..++...+.+|.+.++......|+... -+..+...|.++...|++++|..+|.++++... . ...+..+|
T Consensus 211 ~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~-----~--~~~~~~l~ 283 (537)
T 3fp2_A 211 YLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP-----T--PNSYIFLA 283 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-----C--HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC-----C--chHHHHHH
Confidence 344555666776666531112233222 345577778899999999999999999998732 2 46788899
Q ss_pred HHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHH
Q 022992 81 HCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVA 159 (289)
Q Consensus 81 ~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~ 159 (289)
.++... ++++|+.++++++.+.+.. ..++..+|.++...|++++|+.+|++++.+.+... .++..+|
T Consensus 284 ~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~la 351 (537)
T 3fp2_A 284 LTLADKENSQEFFKFFQKAVDLNPEY------PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV------YPYIQLA 351 (537)
T ss_dssp HHTCCSSCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS------HHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHhccCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH------HHHHHHH
Confidence 999777 9999999999999887643 45899999999999999999999999999876543 5789999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCch-HHHHHHHH
Q 022992 160 QYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTR-EYRLLSDI 238 (289)
Q Consensus 160 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~-e~~~l~~l 238 (289)
.++...|++++|+.+|++++..... ....+..+|.++...|++..|...|++++++.|...... ....+..+
T Consensus 352 ~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 424 (537)
T 3fp2_A 352 CLLYKQGKFTESEAFFNETKLKFPT-------LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGK 424 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHH
Confidence 9999999999999999999854322 123567789999999999999999999988766544221 11112222
Q ss_pred HHHHc-cc-------CHHHHHHHHHhccccCCCchhHHHHHHHHHHhcc
Q 022992 239 AASMD-EE-------DIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLK 279 (289)
Q Consensus 239 ~~a~~-~~-------d~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~~~ 279 (289)
+..+. .+ +...+.+|+..|.....++|.+...+..+...+.
T Consensus 425 a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 473 (537)
T 3fp2_A 425 ATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKL 473 (537)
T ss_dssp HHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 22221 20 1145566666666665556666666655555443
No 63
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.57 E-value=3.9e-14 Score=136.08 Aligned_cols=152 Identities=11% Similarity=0.213 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccc
Q 022992 71 EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT 149 (289)
Q Consensus 71 ~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~ 149 (289)
.-+.++.++|.+|.+. ++++|+.+|++|+++.+.. +.++.++|.++..+|++++|+.+|++|+++.+..
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~---- 76 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF------AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF---- 76 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----
Confidence 4578999999999887 9999999999999997643 4589999999999999999999999999986643
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCc
Q 022992 150 SANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGT 229 (289)
Q Consensus 150 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~ 229 (289)
..++.++|.++..+|++++|++.|++++.... .....+.++|.++..+|++++|...|++++++.|.+.
T Consensus 77 --~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P-------~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~-- 145 (723)
T 4gyw_A 77 --ADAYSNMGNTLKEMQDVQGALQCYTRAIQINP-------AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFP-- 145 (723)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH--
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--
Confidence 36899999999999999999999999985532 2245678899999999999999999999999988764
Q ss_pred hHHHHHHHHHHHHc-ccC
Q 022992 230 REYRLLSDIAASMD-EED 246 (289)
Q Consensus 230 ~e~~~l~~l~~a~~-~~d 246 (289)
....+|+..+. .|+
T Consensus 146 ---~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 146 ---DAYCNLAHCLQIVCD 160 (723)
T ss_dssp ---HHHHHHHHHHHHTTC
T ss_pred ---HHHhhhhhHHHhccc
Confidence 34556666553 555
No 64
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.56 E-value=7.7e-13 Score=118.84 Aligned_cols=218 Identities=11% Similarity=0.139 Sum_probs=164.7
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 022992 46 AKSWDKAGATYVKLANCHLKLES-----------KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAAR 113 (289)
Q Consensus 46 ~g~~~~A~~~~~~a~~~~~~~~~-----------~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~ 113 (289)
.|++++|++.|.++++..+..++ ......++.++|.+|... ++++|++++.+++.+....++......
T Consensus 17 ~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 96 (434)
T 4b4t_Q 17 EKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKV 96 (434)
T ss_dssp HTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 34555555555555544433221 122345678899999776 999999999999999999998888889
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchh
Q 022992 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK 193 (289)
Q Consensus 114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 193 (289)
+...+|.++...|++++|+.+|++++.+.+..+.......+..++|.++...|+|++|+.+++++......... .....
T Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~-~~~~~ 175 (434)
T 4b4t_Q 97 LKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD-KPSLV 175 (434)
T ss_dssp HHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC-STHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc-chhHH
Confidence 99999999999999999999999999999988888888899999999999999999999999999744322211 22344
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCch--HHHHHHHHHHHHc-ccCH----HHHHHHHHhccccCCCc
Q 022992 194 GHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTR--EYRLLSDIAASMD-EEDI----AKFTDVVKEFDSMTPLD 264 (289)
Q Consensus 194 ~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~--e~~~l~~l~~a~~-~~d~----~~~~~al~~~~~~~~~d 264 (289)
..+...+.++...||+.+|...+++++.+.+...... .+.+...++..+. .++. ..+.+++..++.....+
T Consensus 176 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~ 253 (434)
T 4b4t_Q 176 DVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHN 253 (434)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSS
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhh
Confidence 5677889999999999999999999987766555332 3445555555553 5664 45666777766665543
No 65
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.55 E-value=1.2e-13 Score=113.62 Aligned_cols=185 Identities=10% Similarity=0.030 Sum_probs=137.1
Q ss_pred HHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHH
Q 022992 74 QAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSAN 152 (289)
Q Consensus 74 ~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~ 152 (289)
..+.+.|.++... ++++|+.+|++++++.+. .+. .++..+|.++...|++++|+.+|++++++.+. ..
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~ 76 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN-QDS----VTAYNCGVCADNIKKYKEAADYFDIAIKKNYN------LA 76 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS------HH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCC-CCc----HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc------hH
Confidence 5778889988776 999999999999998752 111 46777999999999999999999999987654 34
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC--CCCch
Q 022992 153 QCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT--FSGTR 230 (289)
Q Consensus 153 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~--~~~~~ 230 (289)
.++..+|.++..+|++++|+..|++++...+.++.........+..+|.++...|++++|...|++++++.|. ..
T Consensus 77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~--- 153 (228)
T 4i17_A 77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKT--- 153 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHH---
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccH---
Confidence 6899999999999999999999999986554432212223356788899999999999999999999987665 32
Q ss_pred HHHHHHHHHHHHc-ccCH------------------------HHHHHHHHhccccCCCchhHHHHHHHH
Q 022992 231 EYRLLSDIAASMD-EEDI------------------------AKFTDVVKEFDSMTPLDPWKTTLLLRV 274 (289)
Q Consensus 231 e~~~l~~l~~a~~-~~d~------------------------~~~~~al~~~~~~~~~d~~~~~~~~~~ 274 (289)
.....++..+. .|+. +.+++|+..|.....++|.+...+..+
T Consensus 154 --~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l 220 (228)
T 4i17_A 154 --DALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQ 220 (228)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 23344444432 2221 234667777777766666665444433
No 66
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.55 E-value=5.6e-14 Score=115.84 Aligned_cols=196 Identities=14% Similarity=0.152 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHH
Q 022992 31 DAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLS 109 (289)
Q Consensus 31 ~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~ 109 (289)
-....+...|.++...|++++|..+|.++++.... ....+..+|.++... ++++|+.++++++.+.+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---- 90 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE------DAIPYINFANLLSSVNELERALAFYDKALELDSSA---- 90 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc----
Confidence 34555667788888999999999999999875332 256788889998777 9999999999999886532
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccc
Q 022992 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLK 189 (289)
Q Consensus 110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 189 (289)
..++..+|.++...|++++|+.+|++++++.+.. ..++..+|.++...|++++|+.+|++++.....
T Consensus 91 --~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----- 157 (243)
T 2q7f_A 91 --ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN------GDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN----- 157 (243)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-----
T ss_pred --hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-----
Confidence 5688999999999999999999999999987543 357889999999999999999999999754321
Q ss_pred cchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-cccCHHHHHHHHHh
Q 022992 190 YGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASM-DEEDIAKFTDVVKE 256 (289)
Q Consensus 190 ~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~-~~~d~~~~~~al~~ 256 (289)
....+..+|.++...|+++.|...+++++...|... .....++..+ ..|+.+.....++.
T Consensus 158 --~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~la~~~~~~~~~~~A~~~~~~ 218 (243)
T 2q7f_A 158 --DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHA-----DAFYNAGVTYAYKENREKALEMLDK 218 (243)
T ss_dssp --CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred --cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH-----HHHHHHHHHHHHccCHHHHHHHHHH
Confidence 123567788899999999999999999988766532 3455566655 36665444444433
No 67
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.55 E-value=1.9e-12 Score=120.84 Aligned_cols=224 Identities=13% Similarity=0.062 Sum_probs=163.0
Q ss_pred CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHH
Q 022992 27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA 91 (289)
Q Consensus 27 ~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A 91 (289)
|++++|...|.++ +.++...|++++|...|.++...... ....+..+|.+|.+. ++++|
T Consensus 319 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 319 SRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE------KAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------SHHHHHHHHHHHHHTTCHHHH
T ss_pred cCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcc------cHHHHHHHHHHHHHhccHHHH
Confidence 7888888888876 34566788888888888887754221 245677788888776 99999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHH
Q 022992 92 ISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS 171 (289)
Q Consensus 92 ~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 171 (289)
+.+|++++.+.+.. ..++..+|.++...|++++|+.+|++++++.+... .++..+|.++...|++++|
T Consensus 393 ~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A 460 (597)
T 2xpi_A 393 RRYFSKSSTMDPQF------GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTH------LPYLFLGMQHMQLGNILLA 460 (597)
T ss_dssp HHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCS------HHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch------HHHHHHHHHHHHcCCHHHH
Confidence 99999999875432 34788999999999999999999999998765432 5788999999999999999
Q ss_pred HHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchH--HHHHHHHHHHHc-ccCHH
Q 022992 172 IEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTRE--YRLLSDIAASMD-EEDIA 248 (289)
Q Consensus 172 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e--~~~l~~l~~a~~-~~d~~ 248 (289)
+++|+++...... ....+..++.++...|++++|...|+++.++.+..+..+. ......++..+. .|+.+
T Consensus 461 ~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 533 (597)
T 2xpi_A 461 NEYLQSSYALFQY-------DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYD 533 (597)
T ss_dssp HHHHHHHHHHCCC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCC-------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHH
Confidence 9999999754321 2235677888999999999999999999887554332222 456777777764 77755
Q ss_pred HHHHHHHhccccCCCchhHHHHHHHHHHhc
Q 022992 249 KFTDVVKEFDSMTPLDPWKTTLLLRVKEKL 278 (289)
Q Consensus 249 ~~~~al~~~~~~~~~d~~~~~~~~~~~~~~ 278 (289)
......+. +..++|.+...+..+...+
T Consensus 534 ~A~~~~~~---~~~~~p~~~~~~~~l~~~~ 560 (597)
T 2xpi_A 534 AAIDALNQ---GLLLSTNDANVHTAIALVY 560 (597)
T ss_dssp HHHHHHHH---HHHHSSCCHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHhCCCChHHHHHHHHHH
Confidence 43333333 3233344444444444443
No 68
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.55 E-value=2.2e-13 Score=114.46 Aligned_cols=204 Identities=15% Similarity=0.056 Sum_probs=161.2
Q ss_pred HhhHHHHHHHHHHhhccC--C-------CC-CCCHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHHH
Q 022992 5 IARAEEFEKKAEKKLNGW--G-------LF-GSKYEDAADLFDKA-----------------ANSFKLAKSWDKAGATYV 57 (289)
Q Consensus 5 ~~~a~~~~~~A~~~~k~~--~-------~~-~~~~~~A~~~~~~A-----------------~~~~~~~g~~~~A~~~~~ 57 (289)
.++|...+.++-+.-... . ++ .+++++|.+.|.++ |.+|...|++++|+.+|.
T Consensus 19 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 98 (272)
T 3u4t_A 19 YAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQ 98 (272)
T ss_dssp HHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 678888888886655321 1 12 38999999988876 567888999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHHHhcCCHHHHHHHH
Q 022992 58 KLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIA-ELYESEHNIEQTIVFF 135 (289)
Q Consensus 58 ~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la-~~~~~~g~~~~A~~~y 135 (289)
++++..... ..++..+|.+|... ++++|+.+|++++.+.+. ...++..+| .++.. +++++|+.+|
T Consensus 99 ~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~-~~~~~A~~~~ 165 (272)
T 3u4t_A 99 AAVDRDTTR------LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT------DPKVFYELGQAYYYN-KEYVKADSSF 165 (272)
T ss_dssp HHHHHSTTC------THHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC------CHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred HHHhcCccc------HHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC------cHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 999975542 35788999999777 999999999999988332 245889999 66666 7999999999
Q ss_pred HHHHHHHhccCccchHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHhhcccc-ccchhhHHHHHHHHHHccCCHHH
Q 022992 136 EKAADMFQNEEVTTSANQCKQKVAQYAAELEQ---YHKSIEIYEEIARQSLNNNLL-KYGVKGHLLNAGICQLCKGDVVA 211 (289)
Q Consensus 136 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~l~~gd~~~ 211 (289)
++++++.+.. ..++..+|.++..+|+ +++|+..|++++......+.. .......+..+|.++...|++.+
T Consensus 166 ~~a~~~~p~~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 166 VKVLELKPNI------YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHSTTC------HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhCccc------hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 9999987654 3578889999999998 999999999998554322211 11123567778999999999999
Q ss_pred HHHHHHHHhhcCCCCC
Q 022992 212 ITNALERYQDMDPTFS 227 (289)
Q Consensus 212 A~~~~~~~~~~~~~~~ 227 (289)
|...|+++++++|...
T Consensus 240 A~~~~~~al~~~p~~~ 255 (272)
T 3u4t_A 240 ADAAWKNILALDPTNK 255 (272)
T ss_dssp HHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhcCccHH
Confidence 9999999999987753
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.54 E-value=1.4e-13 Score=109.19 Aligned_cols=170 Identities=12% Similarity=0.109 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccch
Q 022992 72 AAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTS 150 (289)
Q Consensus 72 aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~ 150 (289)
.+..|.++|.+|... ++++|+.+|++|+++.+.. +.++..+|.++...|++++|+..+.+++...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~----- 72 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN------VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS----- 72 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh-----
Confidence 367899999999776 9999999999999987654 4589999999999999999999999999876543
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCch
Q 022992 151 ANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTR 230 (289)
Q Consensus 151 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~ 230 (289)
..++..+|.++...++++.|+..+.++...... ....+..+|.++...|++++|...|++++++.|...
T Consensus 73 -~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~--- 141 (184)
T 3vtx_A 73 -AEAYYILGSANFMIDEKQAAIDALQRAIALNTV-------YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFI--- 141 (184)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-------chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhh---
Confidence 357888999999999999999999999754322 223567789999999999999999999999887643
Q ss_pred HHHHHHHHHHHHc-ccCHHHHHHHHHhccccCCCchhHH
Q 022992 231 EYRLLSDIAASMD-EEDIAKFTDVVKEFDSMTPLDPWKT 268 (289)
Q Consensus 231 e~~~l~~l~~a~~-~~d~~~~~~al~~~~~~~~~d~~~~ 268 (289)
.....++..+. .|+ +++|+..|...-.++|.+.
T Consensus 142 --~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 142 --RAYQSIGLAYEGKGL---RDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp --HHHHHHHHHHHHTTC---HHHHHHHHHHHHHTTHHHH
T ss_pred --hHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCccCH
Confidence 34566777664 555 4556666666666677653
No 70
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.54 E-value=2.9e-12 Score=103.96 Aligned_cols=176 Identities=11% Similarity=0.051 Sum_probs=139.0
Q ss_pred CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHc-c-CCHHH
Q 022992 27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYK-K-TSSNE 90 (289)
Q Consensus 27 ~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~-~-~~~~~ 90 (289)
+++++|..+|.++ +.+|...|++++|..+|.+++..... ....+..+|.++. . .++++
T Consensus 22 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~~ 95 (225)
T 2vq2_A 22 QDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD------SAEINNNYGWFLCGRLNRPAE 95 (225)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHTTTCCHHH
T ss_pred hhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHhcCcHHH
Confidence 5677777776665 56788999999999999999987532 1446778888884 4 59999
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHH
Q 022992 91 AISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHK 170 (289)
Q Consensus 91 A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 170 (289)
|+.++++++. .+.......++..+|.++...|++++|+.+|+++++..+.. ..++..+|.++...|++++
T Consensus 96 A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 96 SMAYFDKALA----DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF------PPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HHHHHHHHHT----STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHc----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------chHHHHHHHHHHHcCCHHH
Confidence 9999999988 22223356788999999999999999999999999986543 3578999999999999999
Q ss_pred HHHHHHHHHHHHh-hccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992 171 SIEIYEEIARQSL-NNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT 225 (289)
Q Consensus 171 A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~ 225 (289)
|+.+|++++.... .. ...+...+.++...|+...|...++......|.
T Consensus 166 A~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 214 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQ-------ADDLLLGWKIAKALGNAQAAYEYEAQLQANFPY 214 (225)
T ss_dssp HHHHHHHHHHHHCSCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCCCC-------HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC
Confidence 9999999985442 11 223445567778899999999999888776655
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.54 E-value=1.1e-13 Score=108.74 Aligned_cols=173 Identities=10% Similarity=0.070 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCH
Q 022992 30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL 108 (289)
Q Consensus 30 ~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~ 108 (289)
+.....+...+.++...|++++|...+.+++..... ...++..+|.++... ++++|+.++++++...+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--- 75 (186)
T 3as5_A 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF------DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDN--- 75 (186)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---
Confidence 455677888899999999999999999998866432 156788889998776 9999999999999885432
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccc
Q 022992 109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLL 188 (289)
Q Consensus 109 ~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 188 (289)
..++..+|.++...|++++|+.+|++++.+.+.. ..++..+|.++...|++++|+.+|++++.....
T Consensus 76 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---- 142 (186)
T 3as5_A 76 ---VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN------FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN---- 142 (186)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred ---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh------HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc----
Confidence 4578999999999999999999999999986542 357899999999999999999999999754321
Q ss_pred ccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992 189 KYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS 227 (289)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~ 227 (289)
....+..++.++...|++..|...+++++++.|...
T Consensus 143 ---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 143 ---EGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred ---chHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence 134567788999999999999999999988766543
No 72
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.53 E-value=1.1e-12 Score=110.16 Aligned_cols=167 Identities=22% Similarity=0.297 Sum_probs=133.3
Q ss_pred hhHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCC
Q 022992 6 ARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKA-----------------ANSFKLAKSWDKAGATYVKLANCHLKLES 68 (289)
Q Consensus 6 ~~a~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A-----------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 68 (289)
..+..++..|...++. |+|++|+..|.++ |.+|...|++++|+..|.+++..+.....
T Consensus 13 ~~~~~~~~~a~~~~~~-----g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQ-----GKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp SSHHHHHHHHHHHHHT-----TCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 4567777777777763 4777777777665 67788999999999999999998764322
Q ss_pred HHHHHHHHHHHHHHHcc--------C-CHHHHHHHHHHHHHHHHhcCCHHHH-----------HHHHHHHHHHHHhcCCH
Q 022992 69 KHEAAQAYVDAAHCYKK--------T-SSNEAISCLEQAVNMFCDIGRLSMA-----------ARYYKEIAELYESEHNI 128 (289)
Q Consensus 69 ~~~aa~~~~~~a~~~~~--------~-~~~~A~~~~~~A~~~~~~~g~~~~~-----------a~~l~~la~~~~~~g~~ 128 (289)
...++..+|.++.. . ++++|+.+|++++..++.......+ +..+..+|.++...|++
T Consensus 88 ---~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~ 164 (261)
T 3qky_A 88 ---VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELY 164 (261)
T ss_dssp ---HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred ---hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCH
Confidence 34678889999976 5 9999999999999998876554322 22238899999999999
Q ss_pred HHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHh----------cCHHHHHHHHHHHHHHHh
Q 022992 129 EQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL----------EQYHKSIEIYEEIARQSL 183 (289)
Q Consensus 129 ~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~a~~~~~ 183 (289)
++|+..|+++++.++... ....++..+|.++..+ |++++|+..|++++...+
T Consensus 165 ~~A~~~~~~~l~~~p~~~---~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 165 EAAAVTYEAVFDAYPDTP---WADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHHHHHHCTTST---THHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHCCCCc---hHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 999999999999877532 3457889999999877 999999999999986543
No 73
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.53 E-value=1.5e-12 Score=109.99 Aligned_cols=169 Identities=12% Similarity=0.148 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcc----C-CHHHHHHHHHHHHHHHHhcCCH
Q 022992 34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK----T-SSNEAISCLEQAVNMFCDIGRL 108 (289)
Q Consensus 34 ~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~----~-~~~~A~~~~~~A~~~~~~~g~~ 108 (289)
..+...|.+|...|++++|..+|.++++ .++ ..++..+|.+|.. . ++++|+.+|++|++. +
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~-- 72 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACD----LKE----NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----N-- 72 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T--
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCC----HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----C--
Confidence 3456778899999999999999999998 333 3578889999977 5 999999999999876 2
Q ss_pred HHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHH
Q 022992 109 SMAARYYKEIAELYES----EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAE----LEQYHKSIEIYEEIAR 180 (289)
Q Consensus 109 ~~~a~~l~~la~~~~~----~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~ 180 (289)
.+.++..+|.++.. .+++++|+.+|++|++. + ...++..+|.++.. .+++++|+.+|++++.
T Consensus 73 --~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~ 142 (273)
T 1ouv_A 73 --YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----K----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD 142 (273)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----C----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh
Confidence 35689999999999 99999999999999986 1 23678999999999 9999999999999974
Q ss_pred HHhhccccccchhhHHHHHHHHHHc----cCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH
Q 022992 181 QSLNNNLLKYGVKGHLLNAGICQLC----KGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASM 242 (289)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~l~----~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~ 242 (289)
. + ....+.++|.++.. .+++++|...|+++.+.. .. .....++..+
T Consensus 143 ~--~-------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~--~a~~~lg~~~ 192 (273)
T 1ouv_A 143 L--N-------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK-----DS--PGCFNAGNMY 192 (273)
T ss_dssp T--T-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CH--HHHHHHHHHH
T ss_pred c--C-------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----CH--HHHHHHHHHH
Confidence 2 1 23356778888887 899999999999998752 12 3345566655
No 74
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.52 E-value=1.9e-12 Score=106.68 Aligned_cols=180 Identities=13% Similarity=0.029 Sum_probs=138.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 022992 36 FDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARY 114 (289)
Q Consensus 36 ~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~ 114 (289)
+...|..+...|++++|+..|.+++..+.... ....++..+|.+|... ++++|+..|++++..++.... ...+
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~---~~~a 80 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGP---YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN---IDYV 80 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST---THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT---HHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc---HHHH
Confidence 34456677788999999999999998754322 2345788889999777 999999999999999887654 3345
Q ss_pred HHHHHHHHHh------------------cCCHHHHHHHHHHHHHHHhccCccchH-----------HHHHHHHHHHHHHh
Q 022992 115 YKEIAELYES------------------EHNIEQTIVFFEKAADMFQNEEVTTSA-----------NQCKQKVAQYAAEL 165 (289)
Q Consensus 115 l~~la~~~~~------------------~g~~~~A~~~y~~A~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~ 165 (289)
+..+|.++.. .|++++|+..|+++++.++.......+ ......+|.++...
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~ 160 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTER 160 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6666666653 589999999999999998876432211 12225788899999
Q ss_pred cCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992 166 EQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT 225 (289)
Q Consensus 166 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~ 225 (289)
|++++|+..|++++...++++ .....+..+|.++..+|+.+.|...++......|.
T Consensus 161 ~~~~~A~~~~~~~l~~~p~~~----~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 161 GAWVAVVNRVEGMLRDYPDTQ----ATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp TCHHHHHHHHHHHHHHSTTSH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred CcHHHHHHHHHHHHHHCcCCC----ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 999999999999986543321 23356788999999999999999999988776554
No 75
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.51 E-value=1.2e-12 Score=119.65 Aligned_cols=222 Identities=16% Similarity=0.129 Sum_probs=153.1
Q ss_pred HhhHHHHHHHHHHhhc-----------------------cCCCC-CCCHHHHHHHHHHH-------------HHHHHHcC
Q 022992 5 IARAEEFEKKAEKKLN-----------------------GWGLF-GSKYEDAADLFDKA-------------ANSFKLAK 47 (289)
Q Consensus 5 ~~~a~~~~~~A~~~~k-----------------------~~~~~-~~~~~~A~~~~~~A-------------~~~~~~~g 47 (289)
..+|..++.++-+.+. +..++ .|++++|...|.++ +.++...|
T Consensus 205 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~ 284 (514)
T 2gw1_A 205 YDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRN 284 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCC
Confidence 7788888888877321 00112 25666666655554 34455556
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC
Q 022992 48 SWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH 126 (289)
Q Consensus 48 ~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g 126 (289)
++++|...|.+++...... ..++..+|.++... ++++|+.++++++.+.+.. ..++..+|.++...|
T Consensus 285 ~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~ 352 (514)
T 2gw1_A 285 DSTEYYNYFDKALKLDSNN------SSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN------IFPYIQLACLAYREN 352 (514)
T ss_dssp CCTTGGGHHHHHHTTCTTC------THHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSC------SHHHHHHHHHTTTTT
T ss_pred CHHHHHHHHHHHhhcCcCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhh------HHHHHHHHHHHHHcC
Confidence 6666666666665543221 23566677777665 7888888888887765543 237888999999999
Q ss_pred CHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHc-
Q 022992 127 NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC- 205 (289)
Q Consensus 127 ~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~- 205 (289)
++++|+.+|+++++..+... .++..+|.++...|++++|+.+|++++......+.. ......+..+|.++..
T Consensus 353 ~~~~A~~~~~~~~~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 425 (514)
T 2gw1_A 353 KFDDCETLFSEAKRKFPEAP------EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI-YVGIAPLVGKATLLTRN 425 (514)
T ss_dssp CHHHHHHHHHHHHHHSTTCS------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSC-SSCSHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHHcccCH------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchH-HHHHHHHHHHHHHHhhh
Confidence 99999999999998866433 578899999999999999999999998654433211 1112356788999999
Q ss_pred --cCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-cccCHHHH
Q 022992 206 --KGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASM-DEEDIAKF 250 (289)
Q Consensus 206 --~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~-~~~d~~~~ 250 (289)
.|+++.|...|++++.+.|... .....++..+ ..|+.+..
T Consensus 426 ~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~~la~~~~~~g~~~~A 468 (514)
T 2gw1_A 426 PTVENFIEATNLLEKASKLDPRSE-----QAKIGLAQMKLQQEDIDEA 468 (514)
T ss_dssp CCTTHHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTTCHHHH
T ss_pred hhcCCHHHHHHHHHHHHHhCcccH-----HHHHHHHHHHHHhcCHHHH
Confidence 9999999999999998876542 3345566655 36665443
No 76
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.51 E-value=4.6e-12 Score=115.67 Aligned_cols=202 Identities=12% Similarity=0.009 Sum_probs=141.7
Q ss_pred HhhHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHH
Q 022992 5 IARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKA-------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHE 71 (289)
Q Consensus 5 ~~~a~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A-------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 71 (289)
.+.|..++..|...++. |+|++|+..|.++ |.++...|++++|..+|.++++....
T Consensus 3 ~~~a~~~~~~g~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------ 71 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRN-----KKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD------ 71 (514)
T ss_dssp HHHHHHHHHHHHHHHHT-----SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC------
T ss_pred chhHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH------
Confidence 45777778888777763 5888998888887 56788899999999999999987432
Q ss_pred HHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCH------------------------------------------
Q 022992 72 AAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL------------------------------------------ 108 (289)
Q Consensus 72 aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~------------------------------------------ 108 (289)
...++..+|.+|... ++++|+.+|++++...+.....
T Consensus 72 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 151 (514)
T 2gw1_A 72 YSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKER 151 (514)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----------------------
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHH
Confidence 145778888888776 9999999999887654311000
Q ss_pred -------------------------------HHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHhc-----cCc--
Q 022992 109 -------------------------------SMAARYYKEIAELYES---EHNIEQTIVFFEKAADMFQN-----EEV-- 147 (289)
Q Consensus 109 -------------------------------~~~a~~l~~la~~~~~---~g~~~~A~~~y~~A~~~~~~-----~~~-- 147 (289)
...+..+...|.++.. .|++++|+.+|+++++.++. ...
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 231 (514)
T 2gw1_A 152 KDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEK 231 (514)
T ss_dssp -----CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHH
T ss_pred HhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccc
Confidence 0015566777776665 68899999999999884321 111
Q ss_pred -cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992 148 -TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT 225 (289)
Q Consensus 148 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~ 225 (289)
......++..+|.++...|++++|+.+|++++.... . ...+..++.++...|++..|...+++++.+.|.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~-------~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 302 (514)
T 2gw1_A 232 LKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP-------R-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN 302 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC-------C-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT
T ss_pred cChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc-------c-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC
Confidence 134456788889999999999999999988864321 1 234455566666666666666666666655544
No 77
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.51 E-value=8e-13 Score=107.71 Aligned_cols=168 Identities=11% Similarity=0.094 Sum_probs=120.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcC
Q 022992 38 KAANSFKLAKSWDKAGATYVKLANCHLKLE----------SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIG 106 (289)
Q Consensus 38 ~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~----------~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g 106 (289)
.-|..+...|++++|+.+|.+++++..... ..........++|.+|... ++++|+.+|++++++.+..
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~- 87 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNN- 87 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-
Confidence 334555566777777777777776633210 0011122223389999777 9999999999999997754
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHhh
Q 022992 107 RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQ--YHKSIEIYEEIARQSLN 184 (289)
Q Consensus 107 ~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~a~~~~~~ 184 (289)
..++.++|.++...|++++|+.+|++++++.+.. ..++.++|.++...|+ ...+...|.++..
T Consensus 88 -----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~---- 152 (208)
T 3urz_A 88 -----VDCLEACAEMQVCRGQEKDALRMYEKILQLEADN------LAANIFLGNYYYLTAEQEKKKLETDYKKLSS---- 152 (208)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHHHHHHHHHHC---C----
T ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC----
Confidence 4589999999999999999999999999987654 3588999999987764 4556666766541
Q ss_pred ccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992 185 NNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT 225 (289)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~ 225 (289)
.+ .....++..|+++...|++.+|...|++++++.|.
T Consensus 153 ~~----~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 153 PT----KMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp CC----HHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred CC----chhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 10 11224566788988899999999999999998775
No 78
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.50 E-value=2.1e-12 Score=110.84 Aligned_cols=198 Identities=11% Similarity=0.025 Sum_probs=146.9
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc
Q 022992 27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI 105 (289)
Q Consensus 27 ~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~ 105 (289)
.+...-...+...|..+...|++++|..+|.+++..... ...++..+|.++... ++++|+.++++++.+.+..
T Consensus 15 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 88 (327)
T 3cv0_A 15 NNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE------REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD 88 (327)
T ss_dssp SCGGGGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ccchhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC
Confidence 333333444556677888999999999999999987432 245777889998777 9999999999999885433
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccc------------------------------------
Q 022992 106 GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT------------------------------------ 149 (289)
Q Consensus 106 g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~------------------------------------ 149 (289)
..++..+|.++...|++++|+.+|++++...+......
T Consensus 89 ------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 162 (327)
T 3cv0_A 89 ------IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLH 162 (327)
T ss_dssp ------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHH
Confidence 45788889999988999999999998887644322110
Q ss_pred -------hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhc
Q 022992 150 -------SANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDM 222 (289)
Q Consensus 150 -------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~ 222 (289)
....++..+|.++...|++++|+.+|++++..... ....+..+|.++...|++++|...|++++.+
T Consensus 163 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 163 AALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-------DAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 11356788999999999999999999999754321 2245677888999999999999999999887
Q ss_pred CCCCCCchHHHHHHHHHHHH-cccCHH
Q 022992 223 DPTFSGTREYRLLSDIAASM-DEEDIA 248 (289)
Q Consensus 223 ~~~~~~~~e~~~l~~l~~a~-~~~d~~ 248 (289)
.|... .....++..+ ..|+.+
T Consensus 236 ~~~~~-----~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 236 NPGYV-----RVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp CTTCH-----HHHHHHHHHHHHTTCHH
T ss_pred CCCCH-----HHHHHHHHHHHHhccHH
Confidence 76532 2344566655 366643
No 79
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.49 E-value=1.2e-13 Score=125.37 Aligned_cols=197 Identities=11% Similarity=0.013 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCH
Q 022992 33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLES---KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL 108 (289)
Q Consensus 33 ~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~ 108 (289)
+..|...|.++...|++++|+++|.+|+++.+.... ....+.+|.++|.+|... ++++|+.++++++.+.+....+
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 446777899999999999999999999999876542 234577899999999877 9999999999999999886543
Q ss_pred H--HHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHH
Q 022992 109 S--MAARYYKEIAELYESE--HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAA---ELEQYHKSIEIYEEIARQ 181 (289)
Q Consensus 109 ~--~~a~~l~~la~~~~~~--g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~a~~~ 181 (289)
. ..+.++.++|..+... +++++|+.+|++|+++.+... .++..++.++. ..+++++|++.|++++..
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~------~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l 204 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNP------EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL 204 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCH------HHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Confidence 2 3466777888776654 579999999999999876432 45566666644 456778899999888754
Q ss_pred HhhccccccchhhHHHHHHHHH----HccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHc-ccCH
Q 022992 182 SLNNNLLKYGVKGHLLNAGICQ----LCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMD-EEDI 247 (289)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~----l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~-~~d~ 247 (289)
.+.+ ...+..++.++ ...|++..|...+++++.+.|... .....++..+. .|+.
T Consensus 205 ~p~~-------~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~-----~~~~~lg~~~~~~~~~ 263 (472)
T 4g1t_A 205 NPDN-------QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVT-----DVLRSAAKFYRRKDEP 263 (472)
T ss_dssp CSSC-------HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCH-----HHHHHHHHHHHHTTCH
T ss_pred CCcc-------hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHH-----HHHHHHHHHHHHcCch
Confidence 3221 11223333332 334667778888888877766543 33455565553 4443
No 80
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.46 E-value=2.7e-11 Score=101.43 Aligned_cols=211 Identities=6% Similarity=-0.114 Sum_probs=140.9
Q ss_pred HhhHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHc
Q 022992 5 IARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYK 84 (289)
Q Consensus 5 ~~~a~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~ 84 (289)
.++|...+.++-+... .+...-...+...|.++...|++++|..+|.++++.... ...++..+|.+|.
T Consensus 21 ~~~A~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~ 88 (275)
T 1xnf_A 21 QEVILARMEQILASRA------LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD------MPEVFNYLGIYLT 88 (275)
T ss_dssp HHHHHHHHHHHHTSSC------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc------ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHH
Confidence 5566666665544322 123344566777889999999999999999999987432 2457888999997
Q ss_pred cC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHH
Q 022992 85 KT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAA 163 (289)
Q Consensus 85 ~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (289)
.. ++++|+.+|++++.+.+.. ..++..+|.++...|++++|+.+|++++++.+... .....+ .+..
T Consensus 89 ~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~------~~~~~~-~~~~ 155 (275)
T 1xnf_A 89 QAGNFDAAYEAFDSVLELDPTY------NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP------FRSLWL-YLAE 155 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTC------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHH-HHHH
T ss_pred HccCHHHHHHHHHHHHhcCccc------cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh------HHHHHH-HHHH
Confidence 77 9999999999999987654 35899999999999999999999999999866432 122222 3446
Q ss_pred HhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHc
Q 022992 164 ELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMD 243 (289)
Q Consensus 164 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~ 243 (289)
..|++++|+..|++++...... . .....+.+++..++...|...+.+++...+... .........++..+.
T Consensus 156 ~~~~~~~A~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~la~~~~ 226 (275)
T 1xnf_A 156 QKLDEKQAKEVLKQHFEKSDKE---Q-----WGWNIVEFYLGNISEQTLMERLKADATDNTSLA-EHLSETNFYLGKYYL 226 (275)
T ss_dssp HHHCHHHHHHHHHHHHHHSCCC---S-----THHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHH-HHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCCcc---h-----HHHHHHHHHHHhcCHHHHHHHHHHHhccccccc-ccccHHHHHHHHHHH
Confidence 6799999999998886432111 0 112244455566666666666666554322210 011234445555443
Q ss_pred -ccCHHH
Q 022992 244 -EEDIAK 249 (289)
Q Consensus 244 -~~d~~~ 249 (289)
.|+.+.
T Consensus 227 ~~g~~~~ 233 (275)
T 1xnf_A 227 SLGDLDS 233 (275)
T ss_dssp HTTCHHH
T ss_pred HcCCHHH
Confidence 555443
No 81
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.46 E-value=1.9e-12 Score=97.10 Aligned_cols=111 Identities=13% Similarity=0.078 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccc
Q 022992 108 LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNL 187 (289)
Q Consensus 108 ~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 187 (289)
....|.++.++|..+...|++++|+.+|++|+++.+.. ..++.++|.++..+|+|++|++.|++++........
T Consensus 4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~------~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 77 (127)
T 4gcn_A 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN------ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA 77 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch
Confidence 34678889999999999999999999999999987653 368999999999999999999999999866544332
Q ss_pred cccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCC
Q 022992 188 LKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDP 224 (289)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~ 224 (289)
........+.++|.++...|++..|...|++++.+.|
T Consensus 78 ~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 78 DYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 2223345678899999999999999999999988654
No 82
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.45 E-value=9.2e-13 Score=126.15 Aligned_cols=200 Identities=12% Similarity=0.042 Sum_probs=153.5
Q ss_pred HHcCCHHHHHHHHHHHHHHH-Hhc-CCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 022992 44 KLAKSWDKAGATYVKLANCH-LKL-ESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAE 120 (289)
Q Consensus 44 ~~~g~~~~A~~~~~~a~~~~-~~~-~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~ 120 (289)
...|++++|++.|.++++.. ... ......+.++..+|.++... ++++|+..|++++++.+.. +.++.++|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~ 475 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR------WRLVWYRAV 475 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC------HHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch------HHHHHHHHH
Confidence 46789999999999998211 100 01112345778889888766 9999999999999987654 458999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHH
Q 022992 121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAG 200 (289)
Q Consensus 121 ~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 200 (289)
++...|++++|+..|++|+++.+... .++.++|.++..+|++++ +..|++++..... ....++++|
T Consensus 476 ~~~~~g~~~~A~~~~~~al~l~P~~~------~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-------~~~a~~~lg 541 (681)
T 2pzi_A 476 AELLTGDYDSATKHFTEVLDTFPGEL------APKLALAATAELAGNTDE-HKFYQTVWSTNDG-------VISAAFGLA 541 (681)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCS------HHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-------CHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-------hHHHHHHHH
Confidence 99999999999999999999977643 578999999999999999 9999999854322 234678899
Q ss_pred HHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcc-cC-----HHHHHHHHHhccccCCCchhHH
Q 022992 201 ICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDE-ED-----IAKFTDVVKEFDSMTPLDPWKT 268 (289)
Q Consensus 201 ~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~-~d-----~~~~~~al~~~~~~~~~d~~~~ 268 (289)
.++...|++++|...|++++++.|.+. .....++.++.. ++ .+.+++|+..+..+...+|-..
T Consensus 542 ~~~~~~g~~~~A~~~~~~al~l~P~~~-----~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~ 610 (681)
T 2pzi_A 542 RARSAEGDRVGAVRTLDEVPPTSRHFT-----TARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVL 610 (681)
T ss_dssp HHHHHTTCHHHHHHHHHTSCTTSTTHH-----HHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHH
T ss_pred HHHHHcCCHHHHHHHHHhhcccCcccH-----HHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHH
Confidence 999999999999999999988776643 234455665532 22 5889999999888865554433
No 83
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.43 E-value=2.1e-13 Score=105.43 Aligned_cols=126 Identities=11% Similarity=0.079 Sum_probs=103.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022992 39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKE 117 (289)
Q Consensus 39 A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~ 117 (289)
.|.+++..|++++|+..+.+++.... .....+..+|.+|.+. ++++|+++|++++++.+.. +.++..
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p------~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~------~~a~~~ 70 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPR------QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD------PKAHRF 70 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHH------HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCc------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHH
Confidence 46778888999999999998876543 3455677899999777 9999999999999997654 459999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHH-HHHHHHH
Q 022992 118 IAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIY-EEIARQS 182 (289)
Q Consensus 118 la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~a~~~~ 182 (289)
+|.++...|++++|+.+|++|+++.+.. ..++.++|.++...|++++|++.| ++++...
T Consensus 71 lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~ 130 (150)
T 4ga2_A 71 LGLLYELEENTDKAVECYRRSVELNPTQ------KDLVLKIAELLCKNDVTDGRAKYWVERAAKLF 130 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS
T ss_pred HHHHHHHcCchHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC
Confidence 9999999999999999999999987653 368999999999999999988865 8887554
No 84
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.42 E-value=1.9e-12 Score=97.13 Aligned_cols=106 Identities=14% Similarity=0.184 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCc-
Q 022992 70 HEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV- 147 (289)
Q Consensus 70 ~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~- 147 (289)
.+.|.++.++|.++.+. ++++|+.+|++|+++.+.. +.++.++|.++..+|++++|+.+|++|+++.+....
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~------~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 78 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN------ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD 78 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchh
Confidence 46678889999998776 9999999999999986643 458999999999999999999999999999887543
Q ss_pred cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992 148 TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ 181 (289)
Q Consensus 148 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 181 (289)
....+.++.++|.++..+|++++|+++|++++..
T Consensus 79 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 79 YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3456678999999999999999999999999743
No 85
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.41 E-value=1.3e-12 Score=100.97 Aligned_cols=131 Identities=10% Similarity=0.035 Sum_probs=104.2
Q ss_pred HHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHH
Q 022992 78 DAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQ 156 (289)
Q Consensus 78 ~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~ 156 (289)
.+|.+++.. ++++|+..+++++...+. ....+..+|.+|...|++++|+.+|++++++.+.. ..++.
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~------~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~------~~a~~ 69 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQ------KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD------PKAHR 69 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHH------HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHH
Confidence 367788776 999999999999776554 44578899999999999999999999999987653 36899
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHH-HHHHhhcCCCCC
Q 022992 157 KVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNA-LERYQDMDPTFS 227 (289)
Q Consensus 157 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~-~~~~~~~~~~~~ 227 (289)
.+|.++..+|++++|+..|++++...+. ....++++|.++...|+..+|... ++++++++|..+
T Consensus 70 ~lg~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~ 134 (150)
T 4ga2_A 70 FLGLLYELEENTDKAVECYRRSVELNPT-------QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSP 134 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCH
Confidence 9999999999999999999999855322 234678899999999988766655 589999988753
No 86
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.41 E-value=1.8e-11 Score=102.52 Aligned_cols=159 Identities=11% Similarity=-0.016 Sum_probs=125.0
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 022992 46 AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES 124 (289)
Q Consensus 46 ~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~ 124 (289)
.|++++|+..|.++++.. ..++...+.++..+|.++... ++++|+.+|++++.+.+.. ..++..+|.++..
T Consensus 18 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~ 89 (275)
T 1xnf_A 18 TLQQEVILARMEQILASR--ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM------PEVFNYLGIYLTQ 89 (275)
T ss_dssp CHHHHHHHHHHHHHHTSS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcc--cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHH
Confidence 467788888888887752 134556688899999999777 9999999999999986542 4589999999999
Q ss_pred cCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHH
Q 022992 125 EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQL 204 (289)
Q Consensus 125 ~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 204 (289)
.|++++|+.+|++++++.+.. ..++..+|.++...|++++|+.+|++++......+ ......+.+ .
T Consensus 90 ~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-------~~~~~~~~~-~ 155 (275)
T 1xnf_A 90 AGNFDAAYEAFDSVLELDPTY------NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP-------FRSLWLYLA-E 155 (275)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHH-H
T ss_pred ccCHHHHHHHHHHHHhcCccc------cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh-------HHHHHHHHH-H
Confidence 999999999999999986653 25789999999999999999999999985432221 112222333 5
Q ss_pred ccCCHHHHHHHHHHHhhcCCCC
Q 022992 205 CKGDVVAITNALERYQDMDPTF 226 (289)
Q Consensus 205 ~~gd~~~A~~~~~~~~~~~~~~ 226 (289)
..|++..|...+.+.....+..
T Consensus 156 ~~~~~~~A~~~~~~~~~~~~~~ 177 (275)
T 1xnf_A 156 QKLDEKQAKEVLKQHFEKSDKE 177 (275)
T ss_dssp HHHCHHHHHHHHHHHHHHSCCC
T ss_pred HhcCHHHHHHHHHHHHhcCCcc
Confidence 5699999999999888766553
No 87
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.41 E-value=1.6e-12 Score=118.11 Aligned_cols=155 Identities=10% Similarity=0.073 Sum_probs=116.6
Q ss_pred hcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 022992 65 KLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR---LSMAARYYKEIAELYESEHNIEQTIVFFEKAAD 140 (289)
Q Consensus 65 ~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~---~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~ 140 (289)
...+....+..|+.+|.++... ++++|+++|++|+++.+.... ....+.++.++|.+|..+|++++|+.+|+++++
T Consensus 43 ~~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~ 122 (472)
T 4g1t_A 43 EFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKH 122 (472)
T ss_dssp TSCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3445555678899999999766 999999999999999886543 234577899999999999999999999999999
Q ss_pred HHhccCcc--chHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHH---ccCCHHHHH
Q 022992 141 MFQNEEVT--TSANQCKQKVAQYAAEL--EQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQL---CKGDVVAIT 213 (289)
Q Consensus 141 ~~~~~~~~--~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l---~~gd~~~A~ 213 (289)
+.+....+ ...+.++..+|.++... ++|++|+.+|++++...+.+ ...+...+.++. ..++...|.
T Consensus 123 i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~-------~~~~~~~~~~~~~l~~~~~~~~al 195 (472)
T 4g1t_A 123 VCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN-------PEFTSGLAIASYRLDNWPPSQNAI 195 (472)
T ss_dssp HHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHHHHHSCCCCCTH
T ss_pred HhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhcCchHHHHHH
Confidence 98875433 23456788888877765 57999999999998654322 223344444433 346677889
Q ss_pred HHHHHHhhcCCCC
Q 022992 214 NALERYQDMDPTF 226 (289)
Q Consensus 214 ~~~~~~~~~~~~~ 226 (289)
..+++++++.|..
T Consensus 196 ~~~~~al~l~p~~ 208 (472)
T 4g1t_A 196 DPLRQAIRLNPDN 208 (472)
T ss_dssp HHHHHHHHHCSSC
T ss_pred HHHHHHhhcCCcc
Confidence 9999999887764
No 88
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.41 E-value=9.6e-12 Score=97.46 Aligned_cols=132 Identities=8% Similarity=0.016 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 022992 35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAAR 113 (289)
Q Consensus 35 ~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~ 113 (289)
.+...+.++...|++++|..++.++++.... ...++..+|.++... ++++|+.++++++...+.. ..
T Consensus 44 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~ 111 (186)
T 3as5_A 44 VALHLGIAYVKTGAVDRGTELLERSLADAPD------NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN------FN 111 (186)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh------HH
Confidence 3445578899999999999999999987432 145778888888766 9999999999999886532 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Q 022992 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN 184 (289)
Q Consensus 114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 184 (289)
++..+|.++...|++++|+.+|+++++..+.. ..++..+|.++...|++++|+.+|++++.....
T Consensus 112 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 112 VRFRLGVALDNLGRFDEAIDSFKIALGLRPNE------GKVHRAIAFSYEQMGRHEEALPHFKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 88999999999999999999999999886432 367899999999999999999999999855433
No 89
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.41 E-value=8.1e-12 Score=114.57 Aligned_cols=195 Identities=16% Similarity=0.115 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHccC-CH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHH
Q 022992 53 GATYVKLANCHLKL-ESKHEAAQAYVDAAHCYKKT-SS-NEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIE 129 (289)
Q Consensus 53 ~~~~~~a~~~~~~~-~~~~~aa~~~~~~a~~~~~~-~~-~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~ 129 (289)
...+.+++..+... ......+..+..+|.++... ++ ++|+.+|++|+.+.+.. +.++..+|.++...|+++
T Consensus 81 ~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~ 154 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL------VEAWNQLGEVYWKKGDVT 154 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHH
Confidence 33444444444321 22224577889999999877 99 99999999999986643 458999999999999999
Q ss_pred HHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHHHHhhccccccchhhHHHHHH
Q 022992 130 QTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL---------EQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAG 200 (289)
Q Consensus 130 ~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 200 (289)
+|+.+|++|+++.+. ..++.++|.++..+ |++++|+..|++++..... ....+.++|
T Consensus 155 ~A~~~~~~al~~~p~-------~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~lg 220 (474)
T 4abn_A 155 SAHTCFSGALTHCKN-------KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-------DGRSWYILG 220 (474)
T ss_dssp HHHHHHHHHHTTCCC-------HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHH
T ss_pred HHHHHHHHHHhhCCC-------HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-------CHHHHHHHH
Confidence 999999999988532 36899999999999 9999999999999855322 234577889
Q ss_pred HHHHcc--------CCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHc-ccCHHHHHHHHHhccccCCCchhHHHHH
Q 022992 201 ICQLCK--------GDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMD-EEDIAKFTDVVKEFDSMTPLDPWKTTLL 271 (289)
Q Consensus 201 ~~~l~~--------gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~-~~d~~~~~~al~~~~~~~~~d~~~~~~~ 271 (289)
.++... |++++|...|++++.+.|... ........++.++. .|+.+ +|+..|.....++|.+...+
T Consensus 221 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~lg~~~~~~g~~~---~A~~~~~~al~l~p~~~~a~ 295 (474)
T 4abn_A 221 NAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS--SNPDLHLNRATLHKYEESYG---EALEGFSQAAALDPAWPEPQ 295 (474)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG--GCHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc--cCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCHHHH
Confidence 998888 999999999999999876311 12345666777664 66643 34444444433444444333
Q ss_pred H
Q 022992 272 L 272 (289)
Q Consensus 272 ~ 272 (289)
.
T Consensus 296 ~ 296 (474)
T 4abn_A 296 Q 296 (474)
T ss_dssp H
T ss_pred H
Confidence 3
No 90
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.40 E-value=3.1e-11 Score=120.16 Aligned_cols=229 Identities=11% Similarity=0.151 Sum_probs=158.9
Q ss_pred HhhHHHHHHHHHHhhccC-CCC-C-CCHHHHHHHHHHH---------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHH
Q 022992 5 IARAEEFEKKAEKKLNGW-GLF-G-SKYEDAADLFDKA---------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEA 72 (289)
Q Consensus 5 ~~~a~~~~~~A~~~~k~~-~~~-~-~~~~~A~~~~~~A---------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~a 72 (289)
.+||..++++++...+.. .+. . ++|++|.+++.++ |.++...|++++|+++|.+| ++
T Consensus 1065 yEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA-------dD---- 1133 (1630)
T 1xi4_A 1065 FEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DD---- 1133 (1630)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-------CC----
Confidence 566666666665333311 112 2 6777777777554 67777788888888888775 22
Q ss_pred HHHHHHHHHHHccC-CHHHHHHHHHHHHHH-------------HHhcCCHHHHHH--------HHHHHHHHHHhcCCHHH
Q 022992 73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNM-------------FCDIGRLSMAAR--------YYKEIAELYESEHNIEQ 130 (289)
Q Consensus 73 a~~~~~~a~~~~~~-~~~~A~~~~~~A~~~-------------~~~~g~~~~~a~--------~l~~la~~~~~~g~~~~ 130 (289)
...|.+.+.++.+. ++++|+++|..|... |.+.++...... .+.++|..+...|++++
T Consensus 1134 ~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~Yee 1213 (1630)
T 1xi4_A 1134 PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDA 1213 (1630)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHH
Confidence 34566778888776 889999999887633 233344433222 35579999999999999
Q ss_pred HHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh---------hccccccc----------
Q 022992 131 TIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSL---------NNNLLKYG---------- 191 (289)
Q Consensus 131 A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~---------~~~~~~~~---------- 191 (289)
|+.+|.+| ..+.+++.++..+|+|++|+++++++..... +.+ .+.
T Consensus 1214 A~~~Y~kA--------------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~--Ef~LA~~cgl~Ii 1277 (1630)
T 1xi4_A 1214 AKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGK--EFRLAQMCGLHIV 1277 (1630)
T ss_pred HHHHHHhh--------------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhh--HHHHHHHHHHhhh
Confidence 99999986 2578899999999999999999998842211 000 000
Q ss_pred -hhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccCHHHHHHHHHhccccCCCch
Q 022992 192 -VKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDP 265 (289)
Q Consensus 192 -~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d~~~~~~al~~~~~~~~~d~ 265 (289)
..+.+..++..|...|.+++|...++.++.+.+.+. .+...|+.++..-.++.+.++++.|.+...+.|
T Consensus 1278 v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~-----gmftELaiLyaKy~peklmEhlk~f~~rini~k 1347 (1630)
T 1xi4_A 1278 VHADELEELINYYQDRGYFEELITMLEAALGLERAHM-----GMFTELAILYSKFKPQKMREHLELFWSRVNIPK 1347 (1630)
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHh-----HHHHHHHHHHHhCCHHHHHHHHHHHHHhcccch
Confidence 112233455667788999999999999988776543 445667777766678888888888888877766
No 91
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.38 E-value=2.6e-11 Score=111.32 Aligned_cols=144 Identities=10% Similarity=0.014 Sum_probs=125.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc--CCHHHHHHHH
Q 022992 41 NSFKLAKSWDKAGATYVKLANCHLK-LE-SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI--GRLSMAARYY 115 (289)
Q Consensus 41 ~~~~~~g~~~~A~~~~~~a~~~~~~-~~-~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~--g~~~~~a~~l 115 (289)
..++.+|+|++|...|++++++..+ +| +....+.++.++|.+|... ++++|+.+++++++++.+. .+....+..+
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 4567899999999999999999874 55 3457899999999999877 9999999999999999875 4677899999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-C-ccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Q 022992 116 KEIAELYESEHNIEQTIVFFEKAADMFQNE-E-VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN 184 (289)
Q Consensus 116 ~~la~~~~~~g~~~~A~~~y~~A~~~~~~~-~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 184 (289)
+++|.+|..+|++++|+.+|++|+++.+.. | +.+...++...++.++..++.|++|...|.++......
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~ 467 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALN 467 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999998864 3 33556678899999999999999999999998654433
No 92
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.37 E-value=1.8e-11 Score=91.60 Aligned_cols=105 Identities=11% Similarity=0.129 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccc
Q 022992 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLK 189 (289)
Q Consensus 110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 189 (289)
..+..+.+.|..+...|++++|+.+|++|+++.+.. ..++.++|.++..+|++++|+..|++++....
T Consensus 11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------ 78 (126)
T 4gco_A 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN------AILYSNRAACLTKLMEFQRALDDCDTCIRLDS------ 78 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh------
Confidence 456678888999888899999999999999886543 35788899999999999999999999875422
Q ss_pred cchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992 190 YGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS 227 (289)
Q Consensus 190 ~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~ 227 (289)
.....++++|.++..+|++++|...|+++++++|...
T Consensus 79 -~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~ 115 (126)
T 4gco_A 79 -KFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE 115 (126)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred -hhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCH
Confidence 1234577888999999999999999999998887753
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.36 E-value=2e-11 Score=116.88 Aligned_cols=158 Identities=13% Similarity=0.005 Sum_probs=122.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022992 40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI 118 (289)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~l 118 (289)
|.++...|++++|+..|.++++..... ..++..+|.+|... ++++|+.+|++|+.+.+..- .++.++
T Consensus 440 a~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~------~~~~~l 507 (681)
T 2pzi_A 440 VRALLDLGDVAKATRKLDDLAERVGWR------WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGEL------APKLAL 507 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCS------HHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHhccCcch------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh------HHHHHH
Confidence 557888999999999999999885432 56888999999776 99999999999999987654 488999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHH
Q 022992 119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLN 198 (289)
Q Consensus 119 a~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 198 (289)
|.++...|++++ +.+|++|+++.+.. ..++.++|.++..+|++++|+..|++++.... ....++.+
T Consensus 508 g~~~~~~g~~~~-~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-------~~~~a~~~ 573 (681)
T 2pzi_A 508 AATAELAGNTDE-HKFYQTVWSTNDGV------ISAAFGLARARSAEGDRVGAVRTLDEVPPTSR-------HFTTARLT 573 (681)
T ss_dssp HHHHHHHTCCCT-TCHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHTSCTTST-------THHHHHHH
T ss_pred HHHHHHcCChHH-HHHHHHHHHhCCch------HHHHHHHHHHHHHcCCHHHHHHHHHhhcccCc-------ccHHHHHH
Confidence 999999999999 99999999986653 25789999999999999999999999863211 12345677
Q ss_pred HHHHHHccCC-----HHHHHHHHHHHhhcC
Q 022992 199 AGICQLCKGD-----VVAITNALERYQDMD 223 (289)
Q Consensus 199 ~~~~~l~~gd-----~~~A~~~~~~~~~~~ 223 (289)
.+.+++..++ .....++...+..+.
T Consensus 574 ~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 574 SAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred HHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 7888766554 344444454444443
No 94
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.35 E-value=9.1e-11 Score=100.67 Aligned_cols=201 Identities=13% Similarity=0.101 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 022992 35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAAR 113 (289)
Q Consensus 35 ~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~ 113 (289)
.+...+..+...+++++|+..+++.+.... ++ .....+..+|.++... ++++|++++++ .+ -..
T Consensus 67 a~~~la~~~~~~~~~~~A~~~l~~ll~~~~---~P-~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~----~~~ 131 (291)
T 3mkr_A 67 AVRMFAEYLASHSRRDAIVAELDREMSRSV---DV-TNTTFLLMAASIYFYDQNPDAALRTLHQ-------GD----SLE 131 (291)
T ss_dssp HHHHHHHHHHCSTTHHHHHHHHHHHHHSCC---CC-SCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CC----SHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHhccc---CC-CCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CC----CHH
Confidence 344456666677778888877777654310 11 1134567777887665 88888888887 12 234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHH----HHHHHhcCHHHHHHHHHHHHHHHhhccccc
Q 022992 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVA----QYAAELEQYHKSIEIYEEIARQSLNNNLLK 189 (289)
Q Consensus 114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 189 (289)
++..+|.++..+|++++|+..|++++++.+.. ...+++ .++...|++++|+.+|++++...+.
T Consensus 132 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~--------~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~----- 198 (291)
T 3mkr_A 132 CMAMTVQILLKLDRLDLARKELKKMQDQDEDA--------TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP----- 198 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC-----
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc--------HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC-----
Confidence 78889999999999999999999999885431 122333 3334558999999999999854321
Q ss_pred cchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-cccCH-HHHHHHHHhccccCCCchhH
Q 022992 190 YGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASM-DEEDI-AKFTDVVKEFDSMTPLDPWK 267 (289)
Q Consensus 190 ~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~-~~~d~-~~~~~al~~~~~~~~~d~~~ 267 (289)
....+.++|.++...|++++|...|++++.+.|... .++.+++..+ ..|+. +...+.++....+.+-+|+.
T Consensus 199 --~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~-----~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~ 271 (291)
T 3mkr_A 199 --TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP-----ETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI 271 (291)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred --cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH
Confidence 234567789999999999999999999999887653 3456666554 35554 33445555555556556555
Q ss_pred HHH
Q 022992 268 TTL 270 (289)
Q Consensus 268 ~~~ 270 (289)
..+
T Consensus 272 ~d~ 274 (291)
T 3mkr_A 272 KEY 274 (291)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.35 E-value=6.4e-11 Score=97.38 Aligned_cols=162 Identities=12% Similarity=0.099 Sum_probs=121.8
Q ss_pred HHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHH
Q 022992 8 AEEFEKKAEKKLNGWGLFGSKYEDAADLFDKA-----------------ANSFKLAKSWDKAGATYVKLANCHLKLESKH 70 (289)
Q Consensus 8 a~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A-----------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 70 (289)
+..++..|...++. |+|++|+..|.++ |.+|...|++++|+..|.++++.+.....
T Consensus 4 ~~~~~~~a~~~~~~-----g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~-- 76 (225)
T 2yhc_A 4 PNEIYATAQQKLQD-----GNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-- 76 (225)
T ss_dssp HHHHHHHHHHHHHH-----TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT--
T ss_pred HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc--
Confidence 34455555555542 4666666666665 56788899999999999999998765433
Q ss_pred HHHHHHHHHHHHHc------------------cC-CHHHHHHHHHHHHHHHHhcCCHHHH-----------HHHHHHHHH
Q 022992 71 EAAQAYVDAAHCYK------------------KT-SSNEAISCLEQAVNMFCDIGRLSMA-----------ARYYKEIAE 120 (289)
Q Consensus 71 ~aa~~~~~~a~~~~------------------~~-~~~~A~~~~~~A~~~~~~~g~~~~~-----------a~~l~~la~ 120 (289)
...++..+|.++. .. ++++|+.+|++++..++.......+ +.....+|.
T Consensus 77 -~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~ 155 (225)
T 2yhc_A 77 -IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAE 155 (225)
T ss_dssp -HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334555565553 23 7899999999999998876654321 223357889
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992 121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180 (289)
Q Consensus 121 ~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 180 (289)
++...|++++|+..|+++++.++... ....++..+|.++..+|++++|++.++++..
T Consensus 156 ~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 156 YYTERGAWVAVVNRVEGMLRDYPDTQ---ATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTSH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHHHCcCCC---ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 99999999999999999999987642 3457899999999999999999999998763
No 96
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.34 E-value=5.2e-11 Score=102.22 Aligned_cols=192 Identities=14% Similarity=0.121 Sum_probs=137.5
Q ss_pred CCHHHHHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHH
Q 022992 27 SKYEDAADLFDK----------------AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSN 89 (289)
Q Consensus 27 ~~~~~A~~~~~~----------------A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~ 89 (289)
+++++|++.+++ .|.++...|++++|+.++.+ -++ ..++..+|.++... +++
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~----~~~~~~l~~~~~~~g~~~ 147 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDS----LECMAMTVQILLKLDRLD 147 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCS----HHHHHHHHHHHHHTTCHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCC----HHHHHHHHHHHHHCCCHH
Confidence 456666665554 35678889999999999887 122 34777889998776 999
Q ss_pred HHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCH
Q 022992 90 EAISCLEQAVNMFCDIGRL-SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQY 168 (289)
Q Consensus 90 ~A~~~~~~A~~~~~~~g~~-~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 168 (289)
+|+.++++++...+. +. ...+.++. .++...|++++|+.+|+++++.++.. ..+++.+|.++..+|++
T Consensus 148 ~A~~~l~~~~~~~p~--~~~~~l~~a~~---~l~~~~~~~~eA~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~ 216 (291)
T 3mkr_A 148 LARKELKKMQDQDED--ATLTQLATAWV---SLAAGGEKLQDAYYIFQEMADKCSPT------LLLLNGQAACHMAQGRW 216 (291)
T ss_dssp HHHHHHHHHHHHCTT--CHHHHHHHHHH---HHHHCTTHHHHHHHHHHHHHHHSCCC------HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhCcC--cHHHHHHHHHH---HHHhCchHHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCH
Confidence 999999999988532 21 11122222 23334589999999999999986542 35889999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHH-HHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccCH
Q 022992 169 HKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVA-ITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDI 247 (289)
Q Consensus 169 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~-A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d~ 247 (289)
++|+..|++++...+. ....+.++|.++...|+..+ +...+++++++.|..+ .+..+.. -.
T Consensus 217 ~eA~~~l~~al~~~p~-------~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~------~~~d~~~-----~~ 278 (291)
T 3mkr_A 217 EAAEGVLQEALDKDSG-------HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP------FIKEYRA-----KE 278 (291)
T ss_dssp HHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH------HHHHHHH-----HH
T ss_pred HHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh------HHHHHHH-----HH
Confidence 9999999999855322 23457788888888998765 6788999999988864 1222211 13
Q ss_pred HHHHHHHHhcc
Q 022992 248 AKFTDVVKEFD 258 (289)
Q Consensus 248 ~~~~~al~~~~ 258 (289)
..|.+++..|.
T Consensus 279 ~~fd~~~~~~~ 289 (291)
T 3mkr_A 279 NDFDRLVLQYA 289 (291)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHcC
Confidence 56777776663
No 97
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.32 E-value=1.3e-11 Score=115.54 Aligned_cols=155 Identities=5% Similarity=-0.063 Sum_probs=80.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Q 022992 47 KSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE 125 (289)
Q Consensus 47 g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~ 125 (289)
|++++|..+|.++++.... .+.++..+|.++... ++++|+++|++++++.+.. ..++.++|.++...
T Consensus 3 g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~ 70 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ------DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH------PEAVARLGRVRWTQ 70 (568)
T ss_dssp ------------------C------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC------HHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHC
Confidence 4556666666666555332 134556666666544 6666666666666654432 34566666666666
Q ss_pred CCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHc
Q 022992 126 HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC 205 (289)
Q Consensus 126 g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~ 205 (289)
|++++|+.+|++++++.+.. ..++.++|.++..+|++++|+++|++++..... ....+.+++.++..
T Consensus 71 g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~l~~~~~~ 137 (568)
T 2vsy_A 71 QRHAEAAVLLQQASDAAPEH------PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-------EPYITAQLLNWRRR 137 (568)
T ss_dssp TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHH
Confidence 66666666666666654432 245666666666666666666666666533211 12234555666666
Q ss_pred c---CCHHHHHHHHHHHhhcCCCC
Q 022992 206 K---GDVVAITNALERYQDMDPTF 226 (289)
Q Consensus 206 ~---gd~~~A~~~~~~~~~~~~~~ 226 (289)
. |+.++|...++++++..|..
T Consensus 138 ~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 138 LCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp TTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred hhccccHHHHHHHHHHHHhcCCcc
Confidence 6 66666666666666665553
No 98
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.32 E-value=2.9e-11 Score=90.55 Aligned_cols=100 Identities=15% Similarity=0.105 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccc
Q 022992 71 EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT 149 (289)
Q Consensus 71 ~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~ 149 (289)
..+..+.+.|..|.+. ++++|+++|++|+++.+.. +.++.++|.++..+|++++|+..|++|+++.+..
T Consensus 11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---- 80 (126)
T 4gco_A 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN------AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF---- 80 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh----
Confidence 4577888889988766 9999999999999886643 4589999999999999999999999999986543
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992 150 SANQCKQKVAQYAAELEQYHKSIEIYEEIARQS 182 (289)
Q Consensus 150 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 182 (289)
..++..+|.++..+|++++|++.|++++...
T Consensus 81 --~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 81 --IKGYIRKAACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred --hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 3578999999999999999999999998654
No 99
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.31 E-value=1.4e-10 Score=94.73 Aligned_cols=176 Identities=14% Similarity=0.024 Sum_probs=136.2
Q ss_pred hHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC
Q 022992 7 RAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT 86 (289)
Q Consensus 7 ~a~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~ 86 (289)
+|..++++|.+. | + ...+...|.+|...+++++|+.+|.++++. |+ +.++.++|.+|...
T Consensus 4 eA~~~~~~aa~~--g------~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----g~----~~a~~~lg~~y~~~ 63 (212)
T 3rjv_A 4 EPGSQYQQQAEA--G------D----RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----GD----GDALALLAQLKIRN 63 (212)
T ss_dssp CTTHHHHHHHHT--T------C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TC----HHHHHHHHHHTTSS
T ss_pred hHHHHHHHHHHC--C------C----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcC
Confidence 566666666543 2 3 233556788888899999999999999864 44 56788999999776
Q ss_pred ----CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHhccCccchHHHHHHHH
Q 022992 87 ----SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES----EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKV 158 (289)
Q Consensus 87 ----~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~----~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l 158 (289)
++++|+.+|++|++ .|+ +.++.++|.+|.. .+++++|+.+|++|++.-. ......++.+|
T Consensus 64 g~~~~~~~A~~~~~~A~~----~g~----~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~----~~~~~~a~~~L 131 (212)
T 3rjv_A 64 PQQADYPQARQLAEKAVE----AGS----KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSE----SDAAVDAQMLL 131 (212)
T ss_dssp TTSCCHHHHHHHHHHHHH----TTC----HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT----SHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH----CCC----HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC----CcchHHHHHHH
Confidence 89999999999954 343 5588999999987 7899999999999987532 11235688999
Q ss_pred HHHHHH----hcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHcc-C-----CHHHHHHHHHHHhhc
Q 022992 159 AQYAAE----LEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCK-G-----DVVAITNALERYQDM 222 (289)
Q Consensus 159 ~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~-g-----d~~~A~~~~~~~~~~ 222 (289)
|.+|.. .+++++|+.+|+++... . +....++++|.+|... | |+..|...|+++.+.
T Consensus 132 g~~y~~g~g~~~d~~~A~~~~~~A~~~-~-------~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 132 GLIYASGVHGPEDDVKASEYFKGSSSL-S-------RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHTSSSSCCHHHHHHHHHHHHHT-S-------CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHc-C-------CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 999998 88999999999999743 1 1223567888888642 3 899999999998775
No 100
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.31 E-value=5.5e-11 Score=96.18 Aligned_cols=139 Identities=14% Similarity=0.065 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchH
Q 022992 73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSA 151 (289)
Q Consensus 73 a~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~ 151 (289)
+..+.+.|.++... ++++|+.+|++++. . .+.++.++|.++...|++++|+.+|++++.+.+..
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~-----~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------ 70 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQD-----P----HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL------ 70 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSSS-----C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHcC-----C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------
Confidence 44566777777665 99999999999851 1 24699999999999999999999999999986532
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccc---------cccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhc
Q 022992 152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNL---------LKYGVKGHLLNAGICQLCKGDVVAITNALERYQDM 222 (289)
Q Consensus 152 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~ 222 (289)
..++.++|.++..+|++++|+..|++++.....++. ........++++|.++...|++..|...|++++++
T Consensus 71 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 71 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 367899999999999999999999999854433220 11123356788999999999999999999999998
Q ss_pred CCCC
Q 022992 223 DPTF 226 (289)
Q Consensus 223 ~~~~ 226 (289)
.|..
T Consensus 151 ~p~~ 154 (213)
T 1hh8_A 151 KSEP 154 (213)
T ss_dssp CCSG
T ss_pred Cccc
Confidence 8764
No 101
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.30 E-value=8.2e-10 Score=101.26 Aligned_cols=163 Identities=15% Similarity=0.128 Sum_probs=109.7
Q ss_pred CCCHHHHHHHHHHH------------HHHHHH----cCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcc----
Q 022992 26 GSKYEDAADLFDKA------------ANSFKL----AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK---- 85 (289)
Q Consensus 26 ~~~~~~A~~~~~~A------------~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~---- 85 (289)
.+|+++|..+|.+| |.+|.. .+++++|..+|.++++. |+ ..++..+|.+|..
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~ 127 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK----GL----PQAQQNLGVMYHEGNGV 127 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSS
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCC
Confidence 37888888888876 345666 77888888888888753 33 3456677777765
Q ss_pred C-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHH
Q 022992 86 T-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES----EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQ 160 (289)
Q Consensus 86 ~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~----~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~ 160 (289)
. ++++|+.+|++|++. |+ +.++.++|.+|.. .+++++|+.+|++|++. ++ ..++..+|.
T Consensus 128 ~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~----~~----~~a~~~Lg~ 191 (490)
T 2xm6_A 128 KVDKAESVKWFRLAAEQ----GR----DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ----GN----VWSCNQLGY 191 (490)
T ss_dssp CCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHH
Confidence 3 788888888887653 33 4567777877776 57788888888887764 21 246677777
Q ss_pred HHHH----hcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHc----cCCHHHHHHHHHHHhh
Q 022992 161 YAAE----LEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC----KGDVVAITNALERYQD 221 (289)
Q Consensus 161 ~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~----~gd~~~A~~~~~~~~~ 221 (289)
+|.. .+++++|+.+|+++... +....++.+|.++.. .+|+..|...|+++.+
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~---------~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~ 251 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATS---------GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE 251 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 7776 67778888877777521 112234555666553 5666777777666654
No 102
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.29 E-value=8.6e-11 Score=91.02 Aligned_cols=115 Identities=11% Similarity=0.070 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992 72 AAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI------GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (289)
Q Consensus 72 aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~------g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~ 144 (289)
.+..+.+.|..+... ++++|+.+|++|+++.+.. .....-+.+|.++|.++..+|++++|+.+|.+|+++|..
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 455667777777665 8999999999999988762 111134559999999999999999999999999999443
Q ss_pred cCcc-chHHHHH----HHHHHHHHHhcCHHHHHHHHHHHHHHHhhcc
Q 022992 145 EEVT-TSANQCK----QKVAQYAAELEQYHKSIEIYEEIARQSLNNN 186 (289)
Q Consensus 145 ~~~~-~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 186 (289)
.+.. +.-..++ .+.|.++..+|++++|+..|++++...+++.
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 2211 2344567 9999999999999999999999997765553
No 103
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.29 E-value=2.6e-10 Score=104.58 Aligned_cols=158 Identities=16% Similarity=0.179 Sum_probs=100.0
Q ss_pred HHHHHHHHHcc----C-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHhc
Q 022992 75 AYVDAAHCYKK----T-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE-----HNIEQTIVFFEKAADMFQN 144 (289)
Q Consensus 75 ~~~~~a~~~~~----~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~-----g~~~~A~~~y~~A~~~~~~ 144 (289)
++..+|.+|.. . ++++|+.+|++|++. |+ ..++..+|.++... +++++|+.+|++|++.
T Consensus 257 a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--- 325 (490)
T 2xm6_A 257 AQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ----GN----SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--- 325 (490)
T ss_dssp HHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT----TC----HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc---
Confidence 44455555544 2 666666666666532 32 23666778887776 7888888888888764
Q ss_pred cCccchHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHc----cCCHHHHHHHHH
Q 022992 145 EEVTTSANQCKQKVAQYAAELE---QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC----KGDVVAITNALE 217 (289)
Q Consensus 145 ~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~----~gd~~~A~~~~~ 217 (289)
+. ..++.++|.++...| ++++|+.+|+++... +....++++|.++.. .+|+.+|...|+
T Consensus 326 -~~----~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 391 (490)
T 2xm6_A 326 -GD----ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---------GEKAAQFNLGNALLQGKGVKKDEQQAAIWMR 391 (490)
T ss_dssp -TC----HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred -CC----HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 21 246788888887755 888888888888632 123456778888877 789999999999
Q ss_pred HHhhcCCCCCCchHHHHHHHHHHHHcccC--HHHHHHHHHhccccCCCc
Q 022992 218 RYQDMDPTFSGTREYRLLSDIAASMDEED--IAKFTDVVKEFDSMTPLD 264 (289)
Q Consensus 218 ~~~~~~~~~~~~~e~~~l~~l~~a~~~~d--~~~~~~al~~~~~~~~~d 264 (289)
++.+.. .. .....|+..+..|. ...+.+|...|......+
T Consensus 392 ~A~~~~-----~~--~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 392 KAAEQG-----LS--AAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHTT-----CH--HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHhCC-----CH--HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 987742 22 34556777664321 233344444444443333
No 104
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.29 E-value=3.2e-11 Score=97.61 Aligned_cols=135 Identities=16% Similarity=0.157 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCH
Q 022992 30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL 108 (289)
Q Consensus 30 ~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~ 108 (289)
.++...| ..|..+...|++++|+..|.+++. . .+.++.++|.+|... ++++|+.+|++++.+.+..
T Consensus 4 ~~~~~~~-~~g~~~~~~~~~~~A~~~~~~a~~------~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--- 70 (213)
T 1hh8_A 4 VEAISLW-NEGVLAADKKDWKGALDAFSAVQD------P---HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL--- 70 (213)
T ss_dssp HHHHHHH-HHHHHHHHTTCHHHHHHHHHTSSS------C---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred HHHHHHH-HHHHHHHHhCCHHHHHHHHHHHcC------C---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---
Confidence 3445444 456677789999999999998841 1 246889999999777 9999999999999986532
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC----------ccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 022992 109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE----------VTTSANQCKQKVAQYAAELEQYHKSIEIYEEI 178 (289)
Q Consensus 109 ~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 178 (289)
..++.++|.++...|++++|+.+|++++++.+... .......++.++|.++..+|++++|+.+|+++
T Consensus 71 ---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 71 ---AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 46899999999999999999999999999887655 44456688999999999999999999999999
Q ss_pred HH
Q 022992 179 AR 180 (289)
Q Consensus 179 ~~ 180 (289)
+.
T Consensus 148 l~ 149 (213)
T 1hh8_A 148 TS 149 (213)
T ss_dssp HT
T ss_pred HH
Confidence 74
No 105
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.27 E-value=2.6e-10 Score=92.65 Aligned_cols=179 Identities=12% Similarity=0.154 Sum_probs=115.5
Q ss_pred HHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 022992 75 AYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR----------LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ 143 (289)
Q Consensus 75 ~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~----------~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~ 143 (289)
.+...|..+... ++++|+.+|++++.+.+.... .........++|.++...|++++|+.+|++++++.+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 85 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP 85 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 444455555444 999999999999988764322 011122223399999999999999999999999876
Q ss_pred ccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCC--HHHHHHHHHHHhh
Q 022992 144 NEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGD--VVAITNALERYQD 221 (289)
Q Consensus 144 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd--~~~A~~~~~~~~~ 221 (289)
.. ..++..+|.++..+|++++|+.+|++++...+. ....++++|.++...|+ ...+...+.....
T Consensus 86 ~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-------~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 152 (208)
T 3urz_A 86 NN------VDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-------NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS 152 (208)
T ss_dssp TC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C
T ss_pred CC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC
Confidence 54 368899999999999999999999999865322 23457788888766654 3344444444321
Q ss_pred cCCCCCCchHHHHHHHHHHHHcccCHHHHHHHHHhccccCCCchhHH--HHHHHH
Q 022992 222 MDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKT--TLLLRV 274 (289)
Q Consensus 222 ~~~~~~~~~e~~~l~~l~~a~~~~d~~~~~~al~~~~~~~~~d~~~~--~~~~~~ 274 (289)
..+.......++.++. ....+.+|+..|+....++|... ..+.+|
T Consensus 153 ------~~~~~~a~~~~g~~~~--~~~~~~~A~~~~~~al~l~P~~~~~~~l~~i 199 (208)
T 3urz_A 153 ------PTKMQYARYRDGLSKL--FTTRYEKARNSLQKVILRFPSTEAQKTLDKI 199 (208)
T ss_dssp ------CCHHHHHHHHHHHHHH--HHHTHHHHHHHHHHHTTTSCCHHHHHHHHHH
T ss_pred ------CCchhHHHHHHHHHHH--HccCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 1222112222333322 13456677777777777766542 344444
No 106
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.26 E-value=1.1e-10 Score=90.43 Aligned_cols=103 Identities=16% Similarity=0.102 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccc
Q 022992 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLK 189 (289)
Q Consensus 110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 189 (289)
.-...+..+|.++...|++++|+.+|++++.+.+.. ..++.++|.++..+|+|++|+..|++++...+.+
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~------~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~---- 103 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN------VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND---- 103 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC----
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC----
Confidence 445678888999988899999999999999886643 3578889999999999999999999998554222
Q ss_pred cchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992 190 YGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT 225 (289)
Q Consensus 190 ~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~ 225 (289)
...++++|.|+...|++++|..+|++++++.|.
T Consensus 104 ---~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 104 ---YTPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp ---CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred ---cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 245778899999999999999999999887654
No 107
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.25 E-value=5.9e-10 Score=86.28 Aligned_cols=113 Identities=17% Similarity=0.160 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCC
Q 022992 35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKL------ESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR 107 (289)
Q Consensus 35 ~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~ 107 (289)
.+...|+.+...|+|++|+.+|.+|+++.... .....-+.+|.+.|.++... ++++|+.+|++|+++|-+.+.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34455677778889999999999999887652 11223456999999999888 999999999999999554432
Q ss_pred HH-HHHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHHHhccCc
Q 022992 108 LS-MAARYY----KEIAELYESEHNIEQTIVFFEKAADMFQNEEV 147 (289)
Q Consensus 108 ~~-~~a~~l----~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~ 147 (289)
.. .-+.+| .+.|.++..+|++++|+..|++|+++.+++..
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 21 345567 99999999999999999999999999987653
No 108
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.24 E-value=1.7e-10 Score=85.11 Aligned_cols=131 Identities=17% Similarity=0.276 Sum_probs=86.4
Q ss_pred HHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHH
Q 022992 75 AYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQ 153 (289)
Q Consensus 75 ~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~ 153 (289)
++..+|.++... ++++|+.++++++...+.. ..++..+|.++...|++++|+.+|++++...+.. ..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~ 70 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------AE 70 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc------hH
Confidence 445566666444 7777777777776653321 3466677777777788888888888877764332 24
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCC
Q 022992 154 CKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDP 224 (289)
Q Consensus 154 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~ 224 (289)
++..+|.++...|++++|+.++++++..... ....+..++.++...|++.+|...+++++...|
T Consensus 71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 71 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-------ChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 5677777888888888888888777643211 123345567777777888888888777766554
No 109
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.24 E-value=5.5e-11 Score=92.05 Aligned_cols=101 Identities=15% Similarity=0.103 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCcc
Q 022992 70 HEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT 148 (289)
Q Consensus 70 ~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~ 148 (289)
......+..+|.++... ++++|+.+|++++.+.+.. +.++.++|.++...|++++|+.+|++|+.+.+...
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~------~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~-- 104 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN------VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY-- 104 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC--
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc--
Confidence 34466778888888766 9999999999999997654 34899999999999999999999999999987643
Q ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992 149 TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS 182 (289)
Q Consensus 149 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 182 (289)
.++.++|.++..+|++++|+..|++++...
T Consensus 105 ----~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 105 ----TPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 578999999999999999999999998543
No 110
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.23 E-value=2.1e-10 Score=88.47 Aligned_cols=134 Identities=13% Similarity=0.071 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccc
Q 022992 71 EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT 149 (289)
Q Consensus 71 ~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~ 149 (289)
..+..+..+|.++... ++++|+.+|++++.+.+.. ..++..+|.++...|++++|+.+|++++.+.+..
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---- 80 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN------AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY---- 80 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----
Confidence 3455666666666554 7777777777777664432 4467777777777777777777777777765432
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022992 150 SANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQD 221 (289)
Q Consensus 150 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~ 221 (289)
..++..+|.++..+|++++|+.+|++++.....+ .........+..+...|++.+|...+.....
T Consensus 81 --~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 81 --IKGYYRRAASNMALGKFRAALRDYETVVKVKPHD-----KDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 2466777777777777777777777776432211 1111112233335556667777666665543
No 111
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.22 E-value=2.3e-10 Score=93.34 Aligned_cols=189 Identities=12% Similarity=0.069 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC--
Q 022992 50 DKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH-- 126 (289)
Q Consensus 50 ~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g-- 126 (289)
++|...|.++++. |+ +.++..+|.+|... ++++|+.+|++|++. |+ +.++.++|.+|.. +
T Consensus 3 ~eA~~~~~~aa~~----g~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----g~----~~a~~~lg~~y~~-~g~ 65 (212)
T 3rjv_A 3 TEPGSQYQQQAEA----GD----RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----GD----GDALALLAQLKIR-NPQ 65 (212)
T ss_dssp -CTTHHHHHHHHT----TC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TC----HHHHHHHHHHTTS-STT
T ss_pred chHHHHHHHHHHC----CC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHc-CCC
Confidence 3566777887754 44 56788899999766 999999999999763 43 5688999999998 7
Q ss_pred --CHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHH
Q 022992 127 --NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAE----LEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAG 200 (289)
Q Consensus 127 --~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 200 (289)
++++|+.+|++|++. + ...++.++|.+|.. .+++++|+.+|+++.... + .......++++|
T Consensus 66 ~~~~~~A~~~~~~A~~~----g----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~---~~~~~~a~~~Lg 132 (212)
T 3rjv_A 66 QADYPQARQLAEKAVEA----G----SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS--E---SDAAVDAQMLLG 132 (212)
T ss_dssp SCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST--T---SHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC----C----CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC--C---CcchHHHHHHHH
Confidence 999999999999753 2 23578999999987 889999999999997221 1 001245678899
Q ss_pred HHHHc----cCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccC----HHHHHHHHHhccccCCC-chhHHHHH
Q 022992 201 ICQLC----KGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEED----IAKFTDVVKEFDSMTPL-DPWKTTLL 271 (289)
Q Consensus 201 ~~~l~----~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d----~~~~~~al~~~~~~~~~-d~~~~~~~ 271 (289)
.+|.. .+|+.+|...|+++.++ +.. .. ....|+..+..|. ...+.+|+..|...... ++.-...+
T Consensus 133 ~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~---~~--a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~l 206 (212)
T 3rjv_A 133 LIYASGVHGPEDDVKASEYFKGSSSL-SRT---GY--AEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEF 206 (212)
T ss_dssp HHHHHTSSSSCCHHHHHHHHHHHHHT-SCT---TH--HHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHc-CCC---HH--HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99887 78999999999999876 222 22 3556777765331 22444555555444332 23333444
Q ss_pred HHH
Q 022992 272 LRV 274 (289)
Q Consensus 272 ~~~ 274 (289)
.++
T Consensus 207 ~~l 209 (212)
T 3rjv_A 207 DRI 209 (212)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 112
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.21 E-value=4.3e-10 Score=86.73 Aligned_cols=135 Identities=14% Similarity=0.121 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCH
Q 022992 30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL 108 (289)
Q Consensus 30 ~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~ 108 (289)
...+..+...|.++...|++++|..+|.+++...... ..++..+|.++... ++++|+.++++++.+.+..
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~--- 80 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN------AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY--- 80 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---
Confidence 3445667778888899999999999999999875432 56788899999777 9999999999999986543
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992 109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180 (289)
Q Consensus 109 ~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 180 (289)
..++..+|.++...|++++|+.+|++++++.+... ........+..+...|++++|+..++++..
T Consensus 81 ---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 81 ---IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK----DAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 45899999999999999999999999999866432 122335556668889999999999998853
No 113
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.20 E-value=6.5e-10 Score=102.06 Aligned_cols=138 Identities=5% Similarity=-0.091 Sum_probs=110.1
Q ss_pred ccCCHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-C-ccchHHHHHHHHH
Q 022992 84 KKTSSNEAISCLEQAVNMFCDI--GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE-E-VTTSANQCKQKVA 159 (289)
Q Consensus 84 ~~~~~~~A~~~~~~A~~~~~~~--g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~-~-~~~~~~~~~~~l~ 159 (289)
.++++++|+..|++++++..+. .+....+.++.++|.+|..+|++++|+.+|++++++++.. | +.+..+..+++||
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4449999999999999998764 3567899999999999999999999999999999998764 3 3456778999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhcccccc-chhhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022992 160 QYAAELEQYHKSIEIYEEIARQSLNNNLLKY-GVKGHLLNAGICQLCKGDVVAITNALERYQD 221 (289)
Q Consensus 160 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~ 221 (289)
.+|..+|+|++|+.+|++++.+....-...+ .+.....+++.++..++.+.+|...|.++.+
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999754322111122 2444455667788888888888888877643
No 114
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.20 E-value=2.9e-10 Score=99.57 Aligned_cols=136 Identities=13% Similarity=0.163 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHH
Q 022992 32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLES---------KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNM 101 (289)
Q Consensus 32 A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---------~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~ 101 (289)
-+..+...|.++...|++++|+.+|.+++.+...... ....+.++.++|.+|... ++++|+.+|++|+.+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456667788999999999999999999999765431 122367899999999887 999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHH-HHHHHHH
Q 022992 102 FCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSI-EIYEEIA 179 (289)
Q Consensus 102 ~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~ 179 (289)
.+.. +.++.++|.++..+|++++|+.+|++|+++.+.. ..++..++.++..+|++++|. ..|+++.
T Consensus 226 ~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~------~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 DSNN------EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN------KAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6643 4689999999999999999999999999987643 257899999999999999994 4677665
No 115
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.20 E-value=1.8e-09 Score=92.95 Aligned_cols=188 Identities=12% Similarity=0.036 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC
Q 022992 50 DKAGATYVKLAN-CHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHN 127 (289)
Q Consensus 50 ~~A~~~~~~a~~-~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~ 127 (289)
++|..+|++|++ +... -...+...|.++... ++++|+..|++++.+.+.. +. .++.++|.++...|+
T Consensus 81 ~~A~~~~~rAl~~~~p~------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~---~~~~~~~~~~~~~~~ 149 (308)
T 2ond_A 81 DEAANIYERAISTLLKK------NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID--PT---LVYIQYMKFARRAEG 149 (308)
T ss_dssp HHHHHHHHHHHTTTTTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC--TH---HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccC--cc---HHHHHHHHHHHHhcC
Confidence 677777777776 3221 245777777777655 7778888888777754321 11 267777777777777
Q ss_pred HHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHcc
Q 022992 128 IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAA-ELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCK 206 (289)
Q Consensus 128 ~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 206 (289)
+++|+..|++|+++.+.. ..++...+.+.. ..|++++|+.+|++++... + .....+...+..+...
T Consensus 150 ~~~A~~~~~~a~~~~p~~------~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~---p----~~~~~~~~~~~~~~~~ 216 (308)
T 2ond_A 150 IKSGRMIFKKAREDARTR------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKY---G----DIPEYVLAYIDYLSHL 216 (308)
T ss_dssp HHHHHHHHHHHHTSTTCC------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH---T----TCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C----CcHHHHHHHHHHHHHC
Confidence 888888888777654422 123333443322 2577888888887776432 1 1234455666666677
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-cccCHHHHHHHHHhccccCC
Q 022992 207 GDVVAITNALERYQDMDPTFSGTREYRLLSDIAASM-DEEDIAKFTDVVKEFDSMTP 262 (289)
Q Consensus 207 gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~-~~~d~~~~~~al~~~~~~~~ 262 (289)
|++++|+..|++++...+ +++.....+...++... ..|+.+......+......+
T Consensus 217 g~~~~A~~~~~~al~~~~-l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 217 NEDNNTRVLFERVLTSGS-LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp CCHHHHHHHHHHHHHSSS-SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 788888888887776421 11111122333334333 35666666655555444443
No 116
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.19 E-value=5.2e-10 Score=82.47 Aligned_cols=129 Identities=18% Similarity=0.287 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 022992 35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAAR 113 (289)
Q Consensus 35 ~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~ 113 (289)
.+...+.++...|++++|...+.+++..... + ...+..+|.++... ++++|+.++++++...+.. ..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~ 70 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR--S----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------AE 70 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc--c----hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc------hH
Confidence 4556788888999999999999999876432 1 45677788888666 9999999999999875432 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ 181 (289)
Q Consensus 114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 181 (289)
++..+|.++...|++++|+.+|++++...+.. ..++..+|.++...|++++|+.+|++++..
T Consensus 71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 71 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 78899999999999999999999999876532 357889999999999999999999998743
No 117
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.19 E-value=3.8e-09 Score=90.89 Aligned_cols=178 Identities=11% Similarity=0.086 Sum_probs=135.5
Q ss_pred HHHHHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHH
Q 022992 30 EDAADLFDKAA---------------NSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAIS 93 (289)
Q Consensus 30 ~~A~~~~~~A~---------------~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~ 93 (289)
++|...|++|. .++...|++++|...|.+++++... +. ..++.+.|.++.+. ++++|+.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~---~~~~~~~~~~~~~~~~~~~A~~ 155 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI--DP---TLVYIQYMKFARRAEGIKSGRM 155 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS--CT---HHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc--Cc---cHHHHHHHHHHHHhcCHHHHHH
Confidence 88888888884 4566789999999999999986321 11 12788888888766 9999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHH
Q 022992 94 CLEQAVNMFCDIGRLSMAARYYKEIAELYE-SEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSI 172 (289)
Q Consensus 94 ~~~~A~~~~~~~g~~~~~a~~l~~la~~~~-~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 172 (289)
+|++|+...+.. ..++...+.+.. ..|++++|+..|++++++++.. ..++..++.++..+|++++|+
T Consensus 156 ~~~~a~~~~p~~------~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~g~~~~A~ 223 (308)
T 2ond_A 156 IFKKAREDARTR------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI------PEYVLAYIDYLSHLNEDNNTR 223 (308)
T ss_dssp HHHHHHTSTTCC------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHhcCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCCHHHHH
Confidence 999999875432 334555555533 3699999999999999998753 367899999999999999999
Q ss_pred HHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992 173 EIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS 227 (289)
Q Consensus 173 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~ 227 (289)
.+|++++....-+ .......+...+......|+.+.|...++++++..|.-.
T Consensus 224 ~~~~~al~~~~l~---p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 224 VLFERVLTSGSLP---PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp HHHHHHHHSSSSC---GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHhccCCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 9999997431001 111234566667777788999999999999999887644
No 118
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.18 E-value=3.3e-10 Score=84.02 Aligned_cols=103 Identities=10% Similarity=0.100 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccccc
Q 022992 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKY 190 (289)
Q Consensus 111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 190 (289)
.+..+..+|..+...|++++|+.+|++++++.+.. ..++.++|.++..+|++++|+..|++++.....
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------ 70 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED------ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN------ 70 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------
Confidence 45678888888888899999999999998876543 357888899999999999999999888754321
Q ss_pred chhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC
Q 022992 191 GVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTF 226 (289)
Q Consensus 191 ~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~ 226 (289)
....++.+|.++...|++.+|...|++++++.|.+
T Consensus 71 -~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 105 (126)
T 3upv_A 71 -FVRAYIRKATAQIAVKEYASALETLDAARTKDAEV 105 (126)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCccc
Confidence 23456778888888899999999998888877443
No 119
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.17 E-value=6.4e-10 Score=97.31 Aligned_cols=155 Identities=12% Similarity=0.088 Sum_probs=120.2
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCC---------HHHHHHHH
Q 022992 46 AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR---------LSMAARYY 115 (289)
Q Consensus 46 ~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~---------~~~~a~~l 115 (289)
.+++++|+.+|.++.+.. ...+..+.++|.++... ++++|+.+|++|+.+.+.... ....+.++
T Consensus 126 L~~~~~A~~~~~~a~~~~------p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~ 199 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEK------LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASH 199 (336)
T ss_dssp EEEEECCCCGGGCCHHHH------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHH------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHH
Confidence 345566666666665543 34577888999999776 999999999999999876642 22336899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhH
Q 022992 116 KEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGH 195 (289)
Q Consensus 116 ~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 195 (289)
.++|.++..+|++++|+.+|++|+++.+.. ..++.++|.++..+|++++|+..|++++..... ....
T Consensus 200 ~nla~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-------~~~a 266 (336)
T 1p5q_A 200 LNLAMCHLKLQAFSAAIESCNKALELDSNN------EKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-------NKAA 266 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-------CHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-------CHHH
Confidence 999999999999999999999999986643 368899999999999999999999999855322 2235
Q ss_pred HHHHHHHHHccCCHHHHH-HHHHHH
Q 022992 196 LLNAGICQLCKGDVVAIT-NALERY 219 (289)
Q Consensus 196 ~~~~~~~~l~~gd~~~A~-~~~~~~ 219 (289)
+..++.++...|+..+|. ..|.+.
T Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 267 KTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888773 344443
No 120
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.17 E-value=1.1e-10 Score=92.24 Aligned_cols=162 Identities=14% Similarity=0.025 Sum_probs=120.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 022992 36 FDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARY 114 (289)
Q Consensus 36 ~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~ 114 (289)
+...+..+...|++++|+..|.++++..... ..++..+|.++... ++++|+.++++++...+ ++. .
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p---~~~----~ 75 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSR------GDVKLAKADCLLETKQFELAQELLATIPLEYQ---DNS----Y 75 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS------HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC---CHH----H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC---ChH----H
Confidence 4455677888999999999999999886543 56788899999776 99999999999987654 221 1
Q ss_pred HHHHHHH-HHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchh
Q 022992 115 YKEIAEL-YESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK 193 (289)
Q Consensus 115 l~~la~~-~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 193 (289)
....+.+ +...+...+|+..|++++++.+.. ..++..+|.++...|++++|+..|++++...+. +...
T Consensus 76 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~ 144 (176)
T 2r5s_A 76 KSLIAKLELHQQAAESPELKRLEQELAANPDN------FELACELAVQYNQVGRDEEALELLWNILKVNLG-----AQDG 144 (176)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-----TTTT
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc-----cChH
Confidence 2222322 122234456899999999987653 257899999999999999999999999743211 1122
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022992 194 GHLLNAGICQLCKGDVVAITNALERYQD 221 (289)
Q Consensus 194 ~~~~~~~~~~l~~gd~~~A~~~~~~~~~ 221 (289)
..+..++.++...|+.+.|...|++++.
T Consensus 145 ~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 145 EVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 3567788888899999999999988754
No 121
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.17 E-value=2.1e-10 Score=98.06 Aligned_cols=163 Identities=9% Similarity=-0.072 Sum_probs=129.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 022992 36 FDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARY 114 (289)
Q Consensus 36 ~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~ 114 (289)
....|..+...|++++|...|.++++..... ..++..+|.++... ++++|+.++++++...+ + ....
T Consensus 120 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p---~---~~~~ 187 (287)
T 3qou_A 120 XAQQAMQLMQESNYTDALPLLXDAWQLSNQN------GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ---D---TRYQ 187 (287)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC---S---HHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc------hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc---c---hHHH
Confidence 3455777888999999999999999886532 45788899999776 99999999999977654 2 2234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhh
Q 022992 115 YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKG 194 (289)
Q Consensus 115 l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 194 (289)
....+..+...++.++|+..|++++...+.. ..++..+|.++...|++++|+..|++++....+. ....
T Consensus 188 ~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~------~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~-----~~~~ 256 (287)
T 3qou_A 188 GLVAQIELLXQAADTPEIQQLQQQVAENPED------AALATQLALQLHQVGRNEEALELLFGHLRXDLTA-----ADGQ 256 (287)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG-----GGGH
T ss_pred HHHHHHHHHhhcccCccHHHHHHHHhcCCcc------HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc-----ccch
Confidence 5566666767788999999999999987653 2578999999999999999999999998553221 2234
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022992 195 HLLNAGICQLCKGDVVAITNALERYQD 221 (289)
Q Consensus 195 ~~~~~~~~~l~~gd~~~A~~~~~~~~~ 221 (289)
.+.+++.++...|+.+.|...|++.+.
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 567788888889998899999988754
No 122
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.17 E-value=2.6e-10 Score=106.54 Aligned_cols=131 Identities=11% Similarity=0.001 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHH
Q 022992 34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAA 112 (289)
Q Consensus 34 ~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a 112 (289)
..+...|.++...|++++|..+|.+++++... ...++.++|.+|... ++++|+.+|++++++.+.. .
T Consensus 24 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~ 91 (568)
T 2vsy_A 24 VAWLMLADAELGMGDTTAGEMAVQRGLALHPG------HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH------P 91 (568)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------H
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------H
Confidence 45667788999999999999999999987542 256888999999777 9999999999999986543 5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHH
Q 022992 113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL---EQYHKSIEIYEEIARQS 182 (289)
Q Consensus 113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~a~~~~ 182 (289)
.++.++|.++...|++++|+.+|++++++.+.. ..++..+|.++..+ |++++|++.|++++...
T Consensus 92 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 92 GIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE------PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 689999999999999999999999999986643 35789999999999 99999999999998543
No 123
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.17 E-value=4.6e-10 Score=83.18 Aligned_cols=94 Identities=14% Similarity=0.079 Sum_probs=44.7
Q ss_pred HHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHH
Q 022992 75 AYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQ 153 (289)
Q Consensus 75 ~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~ 153 (289)
.+.+.|..+... ++++|+.+|++++.+.+.. +.++.++|.++...|++++|+.+|++++++.+.. ..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~ 73 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPED------ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF------VR 73 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc------HH
Confidence 344444444333 4555555555554443322 2345555555555555555555555555543321 23
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992 154 CKQKVAQYAAELEQYHKSIEIYEEIAR 180 (289)
Q Consensus 154 ~~~~l~~~~~~~g~~~~A~~~~~~a~~ 180 (289)
++..+|.++..+|++++|+..|++++.
T Consensus 74 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 74 AYIRKATAQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 445555555555555555555555543
No 124
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.15 E-value=9.3e-11 Score=90.24 Aligned_cols=102 Identities=9% Similarity=0.004 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccc
Q 022992 71 EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT 149 (289)
Q Consensus 71 ~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~ 149 (289)
.....+.++|.++... ++++|+.+|++++.+.+.. ..++..+|.++...|++++|+.+|++|+.+.+...
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~--- 89 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD------SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP--- 89 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT---
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc---
Confidence 3455677788888666 9999999999999886643 45889999999999999999999999999876543
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Q 022992 150 SANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN 184 (289)
Q Consensus 150 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 184 (289)
.++.++|.++..+|++++|+..|++++.....
T Consensus 90 ---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 90 ---RFPFHAAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred ---hHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 57899999999999999999999999865543
No 125
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.15 E-value=5.8e-10 Score=86.56 Aligned_cols=111 Identities=8% Similarity=0.071 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCc------------cchHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 022992 109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV------------TTSANQCKQKVAQYAAELEQYHKSIEIYE 176 (289)
Q Consensus 109 ~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 176 (289)
...+..+...|..+...|++++|+.+|.+|+.+++.... ......++.++|.++..+|+|++|+..++
T Consensus 8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 356778999999999999999999999999998653211 23345789999999999999999999999
Q ss_pred HHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC
Q 022992 177 EIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTF 226 (289)
Q Consensus 177 ~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~ 226 (289)
+++...+. ....++..|.++...|+++.|...|++++.+.|..
T Consensus 88 ~al~~~p~-------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 130 (162)
T 3rkv_A 88 EVLKREET-------NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA 130 (162)
T ss_dssp HHHHHSTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhcCCc-------chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCC
Confidence 99855321 23467889999999999999999999999987763
No 126
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.14 E-value=3.9e-09 Score=105.47 Aligned_cols=164 Identities=12% Similarity=0.144 Sum_probs=111.9
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc
Q 022992 27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI 105 (289)
Q Consensus 27 ~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~ 105 (289)
+.|++|..+|++++......+-+-+++..+.+|.+.+.+... ..+|.++|.++... ++++|+++|.+|
T Consensus 1063 glyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~----p~vWsqLAKAql~~G~~kEAIdsYiKA------- 1131 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNE----PAVWSQLAKAQLQKGMVKEAIDSYIKA------- 1131 (1630)
T ss_pred CCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCC----HHHHHHHHHHHHhCCCHHHHHHHHHhc-------
Confidence 455566555555532222222222233334444444444433 45777889999777 999999999887
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-------------Ccc---------chHHHHHHHHHHHHH
Q 022992 106 GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE-------------EVT---------TSANQCKQKVAQYAA 163 (289)
Q Consensus 106 g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~-------------~~~---------~~~~~~~~~l~~~~~ 163 (289)
++ ...+.++|.++.+.|++++|+++|..|....+.. +.. ... ..+.++|..+.
T Consensus 1132 dD----~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~-ad~~~iGd~le 1206 (1630)
T 1xi4_A 1132 DD----PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNN-AHIQQVGDRCY 1206 (1630)
T ss_pred CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCH-HHHHHHHHHHH
Confidence 22 3367779999999999999999998887544221 111 111 23557999999
Q ss_pred HhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022992 164 ELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQD 221 (289)
Q Consensus 164 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~ 221 (289)
..|+|++|+.+|.++. .|.+++.|+...|+++.|.++++++..
T Consensus 1207 ~eg~YeeA~~~Y~kA~---------------ny~rLA~tLvkLge~q~AIEaarKA~n 1249 (1630)
T 1xi4_A 1207 DEKMYDAAKLLYNNVS---------------NFGRLASTLVHLGEYQAAVDGARKANS 1249 (1630)
T ss_pred hcCCHHHHHHHHHhhh---------------HHHHHHHHHHHhCCHHHHHHHHHHhCC
Confidence 9999999999998862 356788888889999999999998744
No 127
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.13 E-value=1.1e-09 Score=85.17 Aligned_cols=103 Identities=12% Similarity=0.022 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccccc
Q 022992 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKY 190 (289)
Q Consensus 111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 190 (289)
.+..+..+|.++...|++++|+.+|++++++.+.. ..++.++|.++..+|+|++|+..|++++.....
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------ 77 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN------PIYLSNRAAAYSASGQHEKAAEDAELATVVDPK------ 77 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------
Confidence 34455555555555555555555555555554322 234555555555555555555555555432211
Q ss_pred chhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC
Q 022992 191 GVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTF 226 (289)
Q Consensus 191 ~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~ 226 (289)
....++++|.++...|++..|...|++++++.|..
T Consensus 78 -~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 112 (164)
T 3sz7_A 78 -YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNG 112 (164)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred -CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 12234445555555555555555555555555443
No 128
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.12 E-value=8.7e-10 Score=85.57 Aligned_cols=104 Identities=11% Similarity=0.083 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC------------HHHHHHHHHHHHHHHccC-CHHHHHHHHHHH
Q 022992 32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLES------------KHEAAQAYVDAAHCYKKT-SSNEAISCLEQA 98 (289)
Q Consensus 32 A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~------------~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A 98 (289)
.+..+...|..+...|+|++|+.+|.+++.+...... ....+.++.++|.+|... ++++|+.++++|
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3455666677777777777777777777777543210 112233444444444333 444444444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 022992 99 VNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADM 141 (289)
Q Consensus 99 ~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~ 141 (289)
+.+.+.. +.++..+|.++..+|++++|+.+|++++++
T Consensus 90 l~~~p~~------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 90 LKREETN------EKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcCCcc------hHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4442221 224444444444444444444444444444
No 129
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.12 E-value=3.8e-10 Score=101.22 Aligned_cols=198 Identities=11% Similarity=0.032 Sum_probs=82.4
Q ss_pred CCHHHHHHHHHHHH---------HHHHHcCCHHHHHHHHHHHHHH-------------HHhcCCHHHH--------HHHH
Q 022992 27 SKYEDAADLFDKAA---------NSFKLAKSWDKAGATYVKLANC-------------HLKLESKHEA--------AQAY 76 (289)
Q Consensus 27 ~~~~~A~~~~~~A~---------~~~~~~g~~~~A~~~~~~a~~~-------------~~~~~~~~~a--------a~~~ 76 (289)
+++.+|++.|.++. ..+...|++++|+.++..+.+. +.++|+.... ..++
T Consensus 46 g~~~eAIdsfika~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~ 125 (449)
T 1b89_A 46 GMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHI 125 (449)
T ss_dssp ---------------------------------------------------------------CHHHHTTTTTCC-----
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHH
Confidence 67777777777662 3445567777777766665532 2222222211 1133
Q ss_pred HHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHH
Q 022992 77 VDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCK 155 (289)
Q Consensus 77 ~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~ 155 (289)
..+|..+... .+++|+.+|.++ ..+.++|.++..+|++++|++.|++|. + ..++
T Consensus 126 ~~IGd~~~~~g~yeeA~~~Y~~a--------------~n~~~LA~~L~~Lg~yq~AVea~~KA~-------~----~~~W 180 (449)
T 1b89_A 126 QQVGDRCYDEKMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKAN-------S----TRTW 180 (449)
T ss_dssp -----------CTTTHHHHHHHT--------------TCHHHHHHHHHTTTCHHHHHHHHHHHT-------C----HHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHh--------------hhHHHHHHHHHHhccHHHHHHHHHHcC-------C----chhH
Confidence 4444444333 444444444433 134444444444455555555544440 0 1234
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHH
Q 022992 156 QKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLL 235 (289)
Q Consensus 156 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l 235 (289)
..+..+++..|+++.|..+...+. . .+.....++.+|...|.+++|...++.++.+++.+. .+.
T Consensus 181 k~v~~aCv~~~ef~lA~~~~l~L~---------~--~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~-----~~f 244 (449)
T 1b89_A 181 KEVCFACVDGKEFRLAQMCGLHIV---------V--HADELEELINYYQDRGYFEELITMLEAALGLERAHM-----GMF 244 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHTTTTTT---------T--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCH-----HHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHH---------h--CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHH-----HHH
Confidence 444444444555555433322211 0 011223455678889999999999999998876653 456
Q ss_pred HHHHHHHcccCHHHHHHHHHhccccCCCch
Q 022992 236 SDIAASMDEEDIAKFTDVVKEFDSMTPLDP 265 (289)
Q Consensus 236 ~~l~~a~~~~d~~~~~~al~~~~~~~~~d~ 265 (289)
..|+.++..=.++.+.+.++.|.+...+.|
T Consensus 245 tel~il~~ky~p~k~~ehl~~~~~~ini~k 274 (449)
T 1b89_A 245 TELAILYSKFKPQKMREHLELFWSRVNIPK 274 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHSTTSCHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhcCcH
Confidence 677888877789999999999988777765
No 130
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.12 E-value=2e-09 Score=82.66 Aligned_cols=105 Identities=13% Similarity=0.105 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccc
Q 022992 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLK 189 (289)
Q Consensus 110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 189 (289)
.....+..+|.++...|++++|+.+|++++.+.+.. ..++..+|.++..+|++++|+..|++++.....+
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---- 88 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD------SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE---- 88 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC----
Confidence 456688899999999999999999999999986643 3578999999999999999999999998553222
Q ss_pred cchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992 190 YGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS 227 (289)
Q Consensus 190 ~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~ 227 (289)
...++++|.++...|++++|...|++++++.|..+
T Consensus 89 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 89 ---PRFPFHAAECLLQXGELAEAESGLFLAQELIANXP 123 (148)
T ss_dssp ---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCG
T ss_pred ---chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 24578899999999999999999999999877643
No 131
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.10 E-value=7.2e-10 Score=86.23 Aligned_cols=102 Identities=14% Similarity=0.089 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCcc
Q 022992 70 HEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT 148 (289)
Q Consensus 70 ~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~ 148 (289)
...+..+..+|.++... ++++|+.+|++++.+.+.. +.++.++|.++...|++++|+.+|++++++.+..
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--- 78 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN------PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY--- 78 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---
Confidence 44567888888888766 9999999999999987653 4689999999999999999999999999987653
Q ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 022992 149 TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSL 183 (289)
Q Consensus 149 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 183 (289)
..++..+|.++..+|++++|+.+|++++....
T Consensus 79 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 79 ---SKAWSRLGLARFDMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHS
T ss_pred ---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 36789999999999999999999999986543
No 132
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.09 E-value=1.9e-10 Score=90.80 Aligned_cols=149 Identities=13% Similarity=0.073 Sum_probs=110.8
Q ss_pred HHHHHHHHhhccCCCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 022992 10 EFEKKAEKKLNGWGLFGSKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQA 75 (289)
Q Consensus 10 ~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~ 75 (289)
.++..|...+.. |++++|...|.++ |.++...|++++|+.+|.+++.... ++ ..
T Consensus 8 ~~~~~a~~~~~~-----g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p---~~----~~ 75 (176)
T 2r5s_A 8 QLLKQVSELLQQ-----GEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ---DN----SY 75 (176)
T ss_dssp THHHHHHHHHHT-----TCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC---CH----HH
T ss_pred HHHHHHHHHHHc-----CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC---Ch----HH
Confidence 345555555542 5778887777765 6778899999999999999876643 22 11
Q ss_pred HHHHHHHH-cc-CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHH
Q 022992 76 YVDAAHCY-KK-TSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQ 153 (289)
Q Consensus 76 ~~~~a~~~-~~-~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~ 153 (289)
+...+.+. .. .+..+|+.++++++.+.+.. ..++..+|.++...|++++|+.+|++++++.+.... ..
T Consensus 76 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~ 145 (176)
T 2r5s_A 76 KSLIAKLELHQQAAESPELKRLEQELAANPDN------FELACELAVQYNQVGRDEEALELLWNILKVNLGAQD----GE 145 (176)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTT----TH
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccCh----HH
Confidence 22222222 12 24456899999999987653 358999999999999999999999999988664322 24
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992 154 CKQKVAQYAAELEQYHKSIEIYEEIAR 180 (289)
Q Consensus 154 ~~~~l~~~~~~~g~~~~A~~~~~~a~~ 180 (289)
++..+|.++..+|++++|+..|++++.
T Consensus 146 a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 146 VKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 788999999999999999999999874
No 133
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.09 E-value=4.9e-10 Score=89.97 Aligned_cols=130 Identities=15% Similarity=0.114 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHH----------HHHHHHHHHHHHHccC-CHHHHHHHHHHHH
Q 022992 31 DAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKH----------EAAQAYVDAAHCYKKT-SSNEAISCLEQAV 99 (289)
Q Consensus 31 ~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~----------~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~ 99 (289)
..+..+...|..+...|++++|+.+|.+++.+.....++. -...++.++|.+|... ++++|+.++++++
T Consensus 36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3556677778888899999999999999998765433111 1246888889998777 9999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHH
Q 022992 100 NMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSI 172 (289)
Q Consensus 100 ~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 172 (289)
.+.+.. ..++..+|.++..+|++++|+.+|++++++.+.. ..++..++.++..++++.++.
T Consensus 116 ~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 116 KIDKNN------VKALYKLGVANMYFGFLEEAKENLYKAASLNPNN------LDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHSTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHHHHHC--
T ss_pred HhCccc------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHHHHHHHHH
Confidence 885532 4588899999999999999999999999886543 256788888888888887776
No 134
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.07 E-value=3.3e-09 Score=80.55 Aligned_cols=102 Identities=13% Similarity=0.044 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccc
Q 022992 71 EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT 149 (289)
Q Consensus 71 ~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~ 149 (289)
.....+...|.++... ++++|+.+|++++...+.. ..++..+|.++...|++++|+.+|++|+.+.+...
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--- 86 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD------ARYFLGLGACRQSLGLYEQALQSYSYGALMDINEP--- 86 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT---
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc---
Confidence 3455667778887666 9999999999999886643 45889999999999999999999999999876543
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Q 022992 150 SANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN 184 (289)
Q Consensus 150 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 184 (289)
.++..+|.++..+|++++|+..|++++.....
T Consensus 87 ---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 87 ---RFPFHAAECHLQLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 47889999999999999999999999865543
No 135
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.07 E-value=1.3e-09 Score=87.44 Aligned_cols=129 Identities=15% Similarity=0.108 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHH----------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022992 71 EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLS----------MAARYYKEIAELYESEHNIEQTIVFFEKAA 139 (289)
Q Consensus 71 ~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~----------~~a~~l~~la~~~~~~g~~~~A~~~y~~A~ 139 (289)
..+..+...|.++... ++++|+.+|++++.+.+...+.. ....++.++|.++...|++++|+.+|++++
T Consensus 36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4566788888888666 99999999999998876654221 125789999999999999999999999999
Q ss_pred HHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHH
Q 022992 140 DMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAI 212 (289)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A 212 (289)
.+.+.. ..++..+|.++..+|++++|+.+|++++.....+ ...+..++.++...++..++
T Consensus 116 ~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~~~~~~~ 175 (198)
T 2fbn_A 116 KIDKNN------VKALYKLGVANMYFGFLEEAKENLYKAASLNPNN-------LDIRNSYELCVNKLKEARKK 175 (198)
T ss_dssp HHSTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHHHHHHHC-
T ss_pred HhCccc------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-------HHHHHHHHHHHHHHHHHHHH
Confidence 985532 3578999999999999999999999998543221 23345566666655554443
No 136
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.06 E-value=7.7e-09 Score=94.12 Aligned_cols=203 Identities=11% Similarity=0.017 Sum_probs=130.2
Q ss_pred HHHHHHHcC---CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-----CHHHHHHHHHHHHHHHHhcCCHHH
Q 022992 39 AANSFKLAK---SWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-----SSNEAISCLEQAVNMFCDIGRLSM 110 (289)
Q Consensus 39 A~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-----~~~~A~~~~~~A~~~~~~~g~~~~ 110 (289)
.|.+|...| ++++|+..|.++++.- +. .+..+.++|.+|... ++++|+.+|++|. + |
T Consensus 182 Lg~~~~~~g~~~~~~~A~~~~~~aa~~g----~~--~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~--g---- 246 (452)
T 3e4b_A 182 LATVYQKKQQPEQQAELLKQMEAGVSRG----TV--TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---P--G---- 246 (452)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTT----CS--CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---G--G----
T ss_pred HHHHHHHcCCcccHHHHHHHHHHHHHCC----CH--HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---C--C----
Confidence 356777788 8888888888887652 21 244557788888654 8889999999986 2 2
Q ss_pred HHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHH
Q 022992 111 AARYYKEIAEL-Y--ESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE-----QYHKSIEIYEEIARQS 182 (289)
Q Consensus 111 ~a~~l~~la~~-~--~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~a~~~~ 182 (289)
-+.++.++|.+ + ...+++++|+.+|++|++. | -..++.++|.+|. .| ++++|+.+|+++.
T Consensus 247 ~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~----g----~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--- 314 (452)
T 3e4b_A 247 YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA----D----QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV--- 314 (452)
T ss_dssp STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---
T ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC----C----CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---
Confidence 24478888888 4 4568999999999998853 2 2357788898887 55 8999999998886
Q ss_pred hhccccccchhhHHHHHHHHHHc----cCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccC--HHHHHHHHHh
Q 022992 183 LNNNLLKYGVKGHLLNAGICQLC----KGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEED--IAKFTDVVKE 256 (289)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~----~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d--~~~~~~al~~ 256 (289)
.+ ....++++|.+|.. ..|+.+|...|+++.+.. . .+ ....|+..+..|. ......|...
T Consensus 315 ~g-------~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~---~~--A~~~Lg~~y~~G~g~~~d~~~A~~~ 380 (452)
T 3e4b_A 315 GR-------EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--Q---NS--ADFAIAQLFSQGKGTKPDPLNAYVF 380 (452)
T ss_dssp TT-------CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--C---TT--HHHHHHHHHHSCTTBCCCHHHHHHH
T ss_pred CC-------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--h---HH--HHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 11 23356777877765 338888999988887632 2 12 2345566554432 2234444444
Q ss_pred ccccCCC-chhHHHHHHHHHHhccccc
Q 022992 257 FDSMTPL-DPWKTTLLLRVKEKLKAKE 282 (289)
Q Consensus 257 ~~~~~~~-d~~~~~~~~~~~~~~~~~~ 282 (289)
|...... ++.-...+..+...+++.+
T Consensus 381 ~~~A~~~g~~~a~~~l~~l~~~~~~~~ 407 (452)
T 3e4b_A 381 SQLAKAQDTPEANDLATQLEAPLTPAQ 407 (452)
T ss_dssp HHHHHTTCCHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhCCHHH
Confidence 4443222 2333344455554444443
No 137
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.05 E-value=5.1e-09 Score=79.48 Aligned_cols=105 Identities=10% Similarity=0.100 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccc
Q 022992 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLK 189 (289)
Q Consensus 110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 189 (289)
.....+..+|..+...|++++|+.+|++++.+.+.. ..++..+|.++..+|++++|+..|++++...+.+
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---- 85 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD------ARYFLGLGACRQSLGLYEQALQSYSYGALMDINE---- 85 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC----
Confidence 345678889999999999999999999999986643 3578999999999999999999999998653222
Q ss_pred cchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992 190 YGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS 227 (289)
Q Consensus 190 ~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~ 227 (289)
...++++|.++...|+++.|...|++++.+.|..+
T Consensus 86 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 86 ---PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp ---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred ---cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 23567889999999999999999999998877644
No 138
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.05 E-value=3.3e-09 Score=78.39 Aligned_cols=117 Identities=12% Similarity=0.107 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccch
Q 022992 72 AAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTS 150 (289)
Q Consensus 72 aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~ 150 (289)
....+..+|.++... ++++|+.+|++++...+.. ..++..+|.++...|++++|+.+|++++++.+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----- 83 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD------AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF----- 83 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-----
Confidence 355677777777665 8888888888888765432 4578888999888899999999999998875532
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccC
Q 022992 151 ANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKG 207 (289)
Q Consensus 151 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 207 (289)
..++..+|.++..+|++++|+.+|++++..... ....+..++.++...|
T Consensus 84 -~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-------~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 84 -IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS-------CKEAADGYQRCMMAQY 132 (133)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG-------GTHHHHHHHHHHHHHT
T ss_pred -hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC-------chHHHHHHHHHHHHhc
Confidence 357888899999999999999999888744321 1223455566665544
No 139
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.05 E-value=5.5e-09 Score=76.76 Aligned_cols=108 Identities=12% Similarity=0.055 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccccc
Q 022992 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKY 190 (289)
Q Consensus 111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 190 (289)
.+..+..+|.++...|++++|+.+|++++...+.. ..++..+|.++...|++++|+.+|++++......+....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 76 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR 76 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH
Confidence 46788999999999999999999999999986542 367899999999999999999999999865433221111
Q ss_pred chhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCC
Q 022992 191 GVKGHLLNAGICQLCKGDVVAITNALERYQDMDP 224 (289)
Q Consensus 191 ~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~ 224 (289)
.....+..+|.++...|++..|...|++++.+.+
T Consensus 77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 1245677889999999999999999999988755
No 140
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.05 E-value=2e-09 Score=95.45 Aligned_cols=129 Identities=12% Similarity=0.174 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHH
Q 022992 33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLE----------SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNM 101 (289)
Q Consensus 33 ~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~----------~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~ 101 (289)
+..+...|..+...|++++|+.+|.+++++..... .....+.++.++|.+|... ++++|+.++++|+++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 44566678888899999999999999999765431 3345577888999998777 999999999999887
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHH
Q 022992 102 FCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIE 173 (289)
Q Consensus 102 ~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 173 (289)
.+. -+.++..+|.++..+|++++|+.+|++|+++.+.. ..++..++.++..+++++++.+
T Consensus 303 ~p~------~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~------~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 303 DPS------NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED------KAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp CTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cch------hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHH
Confidence 543 35688899999999999999999999999886543 2467788888888888877765
No 141
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.04 E-value=1e-08 Score=75.10 Aligned_cols=121 Identities=13% Similarity=0.093 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCc
Q 022992 69 KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV 147 (289)
Q Consensus 69 ~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~ 147 (289)
....+..+..+|.++... ++++|+.++++++...+.. ..++..+|.++...|++++|+.+|++++.+.+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-- 79 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN------AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY-- 79 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC--
Confidence 344566777788888666 8999999999998875432 4578899999998999999999999999875432
Q ss_pred cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCC
Q 022992 148 TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGD 208 (289)
Q Consensus 148 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd 208 (289)
..++..+|.++...|++++|+.+|++++..... ....+..++.++...|+
T Consensus 80 ----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-------~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 80 ----SKAYGRMGLALSSLNKHVEAVAYYKKALELDPD-------NETYKSNLKIAELKLRE 129 (131)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-------CHHHHHHHHHHHHHHTT
T ss_pred ----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCcc-------chHHHHHHHHHHHHHhc
Confidence 357889999999999999999999998754321 12345566777766665
No 142
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.03 E-value=4.7e-09 Score=95.68 Aligned_cols=131 Identities=13% Similarity=0.143 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHH
Q 022992 32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLES---------KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNM 101 (289)
Q Consensus 32 A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---------~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~ 101 (289)
.+..+...|..+...|+|++|+.+|.+|+.+...... ....+.++.++|.+|.+. ++++|+.+|++|+.+
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3456667788889999999999999999998765421 122367899999999887 999999999999998
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHH
Q 022992 102 FCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEI 174 (289)
Q Consensus 102 ~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 174 (289)
.+.+ ..++.++|.++..+|++++|+.+|++|+++.+... .++..++.++..++++++|.+.
T Consensus 347 ~p~~------~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~------~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 347 DSAN------EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK------AARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp STTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcc------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 7643 56899999999999999999999999999866433 4788999999999999888763
No 143
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.02 E-value=1.3e-08 Score=74.73 Aligned_cols=121 Identities=19% Similarity=0.160 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc-CCHH
Q 022992 32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI-GRLS 109 (289)
Q Consensus 32 A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~-g~~~ 109 (289)
.+..+...|.++...|++++|..+|.+++..... ...++..+|.++... ++++|+.++++++.+.+.. ++..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 76 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPT------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR 76 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH
Confidence 4556777888999999999999999999987532 146788889998766 9999999999999999875 5556
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHh
Q 022992 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL 165 (289)
Q Consensus 110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (289)
....++..+|.++...|++++|+.+|++++++.+. ......++.+...+
T Consensus 77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-------PDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHH
Confidence 66889999999999999999999999999987542 23455555555443
No 144
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.02 E-value=4.1e-09 Score=77.34 Aligned_cols=121 Identities=15% Similarity=0.177 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCH
Q 022992 30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL 108 (289)
Q Consensus 30 ~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~ 108 (289)
..-...+...|..+...|++++|+.+|.+++...... ...+..+|.++... ++++|+.++++++.+.+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--- 79 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN------AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY--- 79 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC---
Confidence 4445677778889999999999999999999874321 55788899999777 9999999999999985533
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCH
Q 022992 109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQY 168 (289)
Q Consensus 109 ~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 168 (289)
..++..+|.++...|++++|+.+|++++++.+.. ..++..++.++..+|++
T Consensus 80 ---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 80 ---SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN------ETYKSNLKIAELKLREA 130 (131)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHTTC
T ss_pred ---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccc------hHHHHHHHHHHHHHhcC
Confidence 4588999999999999999999999999986543 25778899999888875
No 145
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.01 E-value=1.4e-09 Score=85.37 Aligned_cols=121 Identities=7% Similarity=0.106 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHH-HHHh
Q 022992 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQY-AAEL 165 (289)
Q Consensus 87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 165 (289)
++++|+.++++++...+.. +.++..+|.++...|++++|+.+|++++.+.+.. ..++..+|.+ +...
T Consensus 25 ~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~l~~~~ 92 (177)
T 2e2e_A 25 NPEAQLQALQDKIRANPQN------SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN------AELYAALATVLYYQA 92 (177)
T ss_dssp --CCCCHHHHHHHHHCCSC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC------HHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhc
Confidence 6778888888888775432 3478888888888888999999998888886543 3567888888 7788
Q ss_pred cCH--HHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC
Q 022992 166 EQY--HKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTF 226 (289)
Q Consensus 166 g~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~ 226 (289)
|++ ++|+.+|++++..... ....++.+|.++...|++..|...|++++.+.|..
T Consensus 93 ~~~~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 93 SQHMTAQTRAMIDKALALDSN-------EITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp TTCCCHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred CCcchHHHHHHHHHHHHhCCC-------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 888 8888888888754321 12346677888888888888888888888877764
No 146
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.01 E-value=4.1e-09 Score=77.85 Aligned_cols=118 Identities=16% Similarity=0.172 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHH
Q 022992 32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM 110 (289)
Q Consensus 32 A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~ 110 (289)
-...+...|.++...|++++|+.+|.++++..... ..++..+|.++... ++++|+.++++++.+.+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------ 82 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD------AKLYSNRAACYTKLLEFQLALKDCEECIQLEPT------ 82 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------
Confidence 34456677888899999999999999999874321 56888999999877 999999999999998654
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcC
Q 022992 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQ 167 (289)
Q Consensus 111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 167 (289)
...++..+|.++...|++++|+.+|++++++.+... .++..++.++..+|+
T Consensus 83 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 83 FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK------EAADGYQRCMMAQYN 133 (133)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGT------HHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCch------HHHHHHHHHHHHhcC
Confidence 245899999999999999999999999999866532 467888888877664
No 147
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.01 E-value=3.3e-09 Score=78.55 Aligned_cols=100 Identities=11% Similarity=0.017 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchh
Q 022992 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK 193 (289)
Q Consensus 114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 193 (289)
.+..+|..+...|++++|+..|++++.+.+.. ..++..+|.++..+|++++|+..|++++..... ..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-------~~ 85 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPER------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-------DI 85 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CH
Confidence 45677888888899999999999998876643 357888999999999999999999988754322 12
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC
Q 022992 194 GHLLNAGICQLCKGDVVAITNALERYQDMDPTF 226 (289)
Q Consensus 194 ~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~ 226 (289)
..+..+|.++...|++++|...|++++++.|.+
T Consensus 86 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 86 AVHAALAVSHTNEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 356778888888889999999998888877764
No 148
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.00 E-value=6.6e-10 Score=101.97 Aligned_cols=136 Identities=15% Similarity=0.152 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchH
Q 022992 73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSA 151 (289)
Q Consensus 73 a~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~ 151 (289)
+..+.++|.++... ++++|+++|++|+++.+.. +.++.++|.++..+|++++|+.+|++|+++.+..
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------ 73 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSN------AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY------ 73 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------
Confidence 44555666666655 8999999999999885543 6689999999999999999999999999885532
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHH--HHccCCHHHHHHHHH-----------H
Q 022992 152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGIC--QLCKGDVVAITNALE-----------R 218 (289)
Q Consensus 152 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~l~~gd~~~A~~~~~-----------~ 218 (289)
..++.++|.++..+|++++|++.|++++.....+ ...+..++.+ +...|++++|.+.++ +
T Consensus 74 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-------~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 146 (477)
T 1wao_1 74 IKGYYRRAASNMALGKFRAALRDYETVVKVKPHD-------KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIE 146 (477)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-------TTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhh
Confidence 3578899999999999999999999998553222 1234455555 677788889999888 6
Q ss_pred HhhcCCCCC
Q 022992 219 YQDMDPTFS 227 (289)
Q Consensus 219 ~~~~~~~~~ 227 (289)
++.+.+.+.
T Consensus 147 al~~~~~~~ 155 (477)
T 1wao_1 147 SMTIEDEYS 155 (477)
T ss_dssp SCCCCTTCC
T ss_pred hcccccccc
Confidence 666666654
No 149
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.00 E-value=6.9e-09 Score=92.05 Aligned_cols=129 Identities=9% Similarity=-0.013 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 022992 72 AAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIG----------RLSMAARYYKEIAELYESEHNIEQTIVFFEKAAD 140 (289)
Q Consensus 72 aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g----------~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~ 140 (289)
.+..+...|..+... ++++|+.+|++|+.+..... .....+.++.++|.++..+|++++|+.+|++|++
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 355678888888766 99999999999999876532 3456678999999999999999999999999999
Q ss_pred HHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHH
Q 022992 141 MFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAIT 213 (289)
Q Consensus 141 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~ 213 (289)
+.+.. ..++..+|.++..+|++++|+..|++++.....+ ...+..++.++...++..++.
T Consensus 302 ~~p~~------~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~-------~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 302 IDPSN------TKALYRRAQGWQGLKEYDQALADLKKAQEIAPED-------KAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp TCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred hCchh------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHHHHHHHH
Confidence 76532 4688999999999999999999999998553222 223445556665555555443
No 150
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.00 E-value=5.5e-09 Score=95.26 Aligned_cols=150 Identities=13% Similarity=0.098 Sum_probs=114.5
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCC---------HHHHHHHHH
Q 022992 47 KSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR---------LSMAARYYK 116 (289)
Q Consensus 47 g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~---------~~~~a~~l~ 116 (289)
+++++|...|.++.+.. ...+..+.+.|.++... ++++|+.+|++|+.+.+.... ....+.++.
T Consensus 248 ~~~~~A~~~~~~~~~~~------~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~ 321 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK------LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFL 321 (457)
T ss_dssp EEEECCCCGGGSCHHHH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHH------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHH
Confidence 34455555555554442 24577888899998777 999999999999999876531 223478999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHH
Q 022992 117 EIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHL 196 (289)
Q Consensus 117 ~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 196 (289)
++|.++..+|++++|+.+|++|+++.+.. ..++.++|.++..+|+|++|+..|++++..... ....+
T Consensus 322 nla~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-------~~~a~ 388 (457)
T 1kt0_A 322 NLAMCYLKLREYTKAVECCDKALGLDSAN------EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-------NKAAR 388 (457)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----------CHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------CHHHH
Confidence 99999999999999999999999987643 367999999999999999999999999743221 12356
Q ss_pred HHHHHHHHccCCHHHHHHH
Q 022992 197 LNAGICQLCKGDVVAITNA 215 (289)
Q Consensus 197 ~~~~~~~l~~gd~~~A~~~ 215 (289)
..++.++...++..++.+.
T Consensus 389 ~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 389 LQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6778888888877766543
No 151
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.99 E-value=6.4e-09 Score=88.80 Aligned_cols=148 Identities=9% Similarity=-0.070 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchH
Q 022992 73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSA 151 (289)
Q Consensus 73 a~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~ 151 (289)
...+..+|..+... ++++|+..|++++...+.. ..++..+|.++...|++++|+.+|++++...+. .
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~------~ 184 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN------GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD------T 184 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS------H
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc------hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc------h
Confidence 34556777777555 9999999999999998754 358999999999999999999999999877552 1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchH
Q 022992 152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTRE 231 (289)
Q Consensus 152 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e 231 (289)
.......+..+...++.++|+..|++++...++ ....+++++.++...|++++|...|.+++...|.+.+
T Consensus 185 ~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~-------~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~--- 254 (287)
T 3qou_A 185 RYQGLVAQIELLXQAADTPEIQQLQQQVAENPE-------DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAAD--- 254 (287)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGG---
T ss_pred HHHHHHHHHHHHhhcccCccHHHHHHHHhcCCc-------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccc---
Confidence 234566677788889999999999999855332 2345778899999999999999999999998887632
Q ss_pred HHHHHHHHHHH
Q 022992 232 YRLLSDIAASM 242 (289)
Q Consensus 232 ~~~l~~l~~a~ 242 (289)
......++..+
T Consensus 255 ~~a~~~l~~~~ 265 (287)
T 3qou_A 255 GQTRXTFQEIL 265 (287)
T ss_dssp GHHHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 23344455544
No 152
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.99 E-value=7.5e-09 Score=77.31 Aligned_cols=101 Identities=12% Similarity=0.016 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccc
Q 022992 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG 191 (289)
Q Consensus 112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 191 (289)
+..+..+|.++...|++++|+.+|++++.+.+.. ..++..+|.++..+|++++|+..|++++.....
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------- 75 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV------AVYYTNRALCYLKMQQPEQALADCRRALELDGQ------- 75 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-------
Confidence 4567778888888888888888888888775542 356778888888888888888888887644211
Q ss_pred hhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992 192 VKGHLLNAGICQLCKGDVVAITNALERYQDMDPT 225 (289)
Q Consensus 192 ~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~ 225 (289)
....++.+|.++...|++..|...|++++.+.|.
T Consensus 76 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 76 SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 2235667777888888888888888887776554
No 153
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.98 E-value=3.4e-09 Score=90.25 Aligned_cols=100 Identities=14% Similarity=0.207 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHH
Q 022992 34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAA 112 (289)
Q Consensus 34 ~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a 112 (289)
..+...|..+...|++++|+..|.+++..... ....+.++|.+|... ++++|+.++++|+.+.+.. .
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~ 72 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQS------V 72 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC------H
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------H
Confidence 44555566666666666666666666665321 134566666666554 6666666666666553321 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 022992 113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNE 145 (289)
Q Consensus 113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~ 145 (289)
.++..+|.++...|++++|+.+|++++++.+..
T Consensus 73 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 73 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 456666666666666666666666666665543
No 154
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.97 E-value=5.3e-09 Score=78.15 Aligned_cols=100 Identities=19% Similarity=0.181 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchH
Q 022992 73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSA 151 (289)
Q Consensus 73 a~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~ 151 (289)
+..+..+|.++... ++++|+.+|++++.+.+.. ..++.++|.++...|++++|+.+|++++.+.+..
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------ 76 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV------AVYYTNRALCYLKMQQPEQALADCRRALELDGQS------ 76 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh------
Confidence 56777888888766 9999999999999886543 4589999999999999999999999999986542
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Q 022992 152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN 184 (289)
Q Consensus 152 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 184 (289)
..++..+|.++..+|++++|+..|++++.....
T Consensus 77 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 77 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 357899999999999999999999999865544
No 155
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.96 E-value=1e-08 Score=74.48 Aligned_cols=99 Identities=18% Similarity=0.331 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccc
Q 022992 71 EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT 149 (289)
Q Consensus 71 ~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~ 149 (289)
..+..+..+|.++... ++++|+.++++++...+.. ..++..+|.++...|++++|+.+|++++.+.+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---- 76 (125)
T 1na0_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---- 76 (125)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc----
Confidence 3456777888888666 9999999999998875422 3578899999999999999999999999875432
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992 150 SANQCKQKVAQYAAELEQYHKSIEIYEEIARQ 181 (289)
Q Consensus 150 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 181 (289)
..++..+|.++...|++++|+.+|++++..
T Consensus 77 --~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 77 --AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 357789999999999999999999998754
No 156
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.95 E-value=1.5e-09 Score=85.33 Aligned_cols=120 Identities=15% Similarity=0.172 Sum_probs=94.3
Q ss_pred HcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-H
Q 022992 45 LAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAEL-Y 122 (289)
Q Consensus 45 ~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~-~ 122 (289)
..|++++|+..+.+++..... ...++..+|.+|... ++++|+.+|++++.+.+.. ..++..+|.+ +
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~l~ 89 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ------NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN------AELYAALATVLY 89 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC------HHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHH
Confidence 356677777777777765432 145778889999776 9999999999999987643 4588899999 7
Q ss_pred HhcCCH--HHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992 123 ESEHNI--EQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS 182 (289)
Q Consensus 123 ~~~g~~--~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 182 (289)
...|++ ++|+.+|++++++.+.. ..++..+|.++...|++++|+.+|++++...
T Consensus 90 ~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 90 YQASQHMTAQTRAMIDKALALDSNE------ITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHTTTCCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HhcCCcchHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 788998 99999999999986543 3578999999999999999999999998543
No 157
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.94 E-value=1.2e-08 Score=92.30 Aligned_cols=101 Identities=12% Similarity=-0.023 Sum_probs=88.3
Q ss_pred HcCCHHHHHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 022992 45 LAKSWDKAGATYVKLANCHLK-LE-SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI--GRLSMAARYYKEIA 119 (289)
Q Consensus 45 ~~g~~~~A~~~~~~a~~~~~~-~~-~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~--g~~~~~a~~l~~la 119 (289)
..|+|++|...|++++++..+ +| +....+.++.++|.+|... ++++|+.+++++++++.+. .+....+..++++|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 467899999999999999874 45 3457889999999999776 9999999999999999875 46788999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHhcc
Q 022992 120 ELYESEHNIEQTIVFFEKAADMFQNE 145 (289)
Q Consensus 120 ~~~~~~g~~~~A~~~y~~A~~~~~~~ 145 (289)
.+|..+|++++|+.+|++|+++++..
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~ 415 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVA 415 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998764
No 158
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.94 E-value=4.1e-09 Score=78.00 Aligned_cols=93 Identities=8% Similarity=0.004 Sum_probs=74.6
Q ss_pred HHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHH
Q 022992 76 YVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQC 154 (289)
Q Consensus 76 ~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~ 154 (289)
+...|.++... ++++|+.+|++++.+.+.. +.++..+|.++...|++++|+.+|++|+++.+.. ..+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~------~~~ 87 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPER------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD------IAV 87 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH
Confidence 34455555444 8888888888888876643 4588899999999999999999999999986653 257
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992 155 KQKVAQYAAELEQYHKSIEIYEEIAR 180 (289)
Q Consensus 155 ~~~l~~~~~~~g~~~~A~~~~~~a~~ 180 (289)
+..+|.++...|++++|+..|++++.
T Consensus 88 ~~~la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 88 HAALAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88999999999999999999999873
No 159
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.94 E-value=1.5e-08 Score=74.86 Aligned_cols=105 Identities=10% Similarity=0.138 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchh
Q 022992 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK 193 (289)
Q Consensus 114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 193 (289)
.+..+|.++...|++++|+..|+++++..+.. .....++..+|.++...|++++|+..|++++......+ ...
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~ 76 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNG---VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD----KAA 76 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSS---TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST----THH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC---cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc----ccH
Confidence 46778888888899999999999999876643 23346788999999999999999999999875432221 123
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992 194 GHLLNAGICQLCKGDVVAITNALERYQDMDPT 225 (289)
Q Consensus 194 ~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~ 225 (289)
..++.+|.++...|++++|...|++++...|.
T Consensus 77 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 77 GGLLKLGLSQYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 45778889999999999999999998887654
No 160
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.93 E-value=4.3e-08 Score=70.41 Aligned_cols=102 Identities=11% Similarity=-0.013 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccc
Q 022992 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG 191 (289)
Q Consensus 112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 191 (289)
+..+..+|.++...|++++|+.+|++++...+.. ..++..+|.++...|++++|+..+++++.....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------- 70 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD------- 70 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-------
Confidence 4678888899888899999999999999876543 357888999999999999999999998754321
Q ss_pred hhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC
Q 022992 192 VKGHLLNAGICQLCKGDVVAITNALERYQDMDPTF 226 (289)
Q Consensus 192 ~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~ 226 (289)
....+..+|.++...|++..|...+++++++.|..
T Consensus 71 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 105 (118)
T 1elw_A 71 WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105 (118)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence 22356778888888999999999999988876653
No 161
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.93 E-value=1.6e-08 Score=91.42 Aligned_cols=125 Identities=10% Similarity=0.058 Sum_probs=104.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc--CCHHHHHHHHH
Q 022992 42 SFKLAKSWDKAGATYVKLANCHLK-LE-SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI--GRLSMAARYYK 116 (289)
Q Consensus 42 ~~~~~g~~~~A~~~~~~a~~~~~~-~~-~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~--g~~~~~a~~l~ 116 (289)
-++..|+|++|...|++++++..+ +| +....+.++.++|.+|... ++++|+.++++++.++.+. .+....+..+.
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 355789999999999999988763 44 3456789999999999766 9999999999999999874 56778999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhcc-C-ccchHHHHHHHHHHHHHHhc
Q 022992 117 EIAELYESEHNIEQTIVFFEKAADMFQNE-E-VTTSANQCKQKVAQYAAELE 166 (289)
Q Consensus 117 ~la~~~~~~g~~~~A~~~y~~A~~~~~~~-~-~~~~~~~~~~~l~~~~~~~g 166 (289)
++|.+|..+|++++|+.+|++|+++++.. | +.+...+++.+++.+...++
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998864 3 33455677788888776543
No 162
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.93 E-value=9e-08 Score=87.02 Aligned_cols=159 Identities=14% Similarity=0.061 Sum_probs=123.5
Q ss_pred CHHHHHHHHHHHH--------------HHHHHc----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHc---cC
Q 022992 28 KYEDAADLFDKAA--------------NSFKLA----KSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYK---KT 86 (289)
Q Consensus 28 ~~~~A~~~~~~A~--------------~~~~~~----g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~---~~ 86 (289)
++++|+..|.+++ .+|... +++++|+..|.+++ .|+ ..++.++|.+|. ..
T Consensus 194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----~g~----~~a~~~Lg~~~~~~~~~ 264 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----PGY----PASWVSLAQLLYDFPEL 264 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----GGS----THHHHHHHHHHHHSGGG
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----CCC----HHHHHHHHHHHHhCCCC
Confidence 8999999998874 334333 69999999999987 233 457888999843 23
Q ss_pred -CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHhccCccchHHHHHHHHHH
Q 022992 87 -SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH-----NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQ 160 (289)
Q Consensus 87 -~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g-----~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~ 160 (289)
++++|+.+|++|++. | -+.++.++|.+|.. | ++++|+.+|++|+ .|. ..++.++|.
T Consensus 265 ~d~~~A~~~~~~Aa~~----g----~~~A~~~Lg~~y~~-G~g~~~d~~~A~~~~~~Aa-----~g~----~~A~~~Lg~ 326 (452)
T 3e4b_A 265 GDVEQMMKYLDNGRAA----D----QPRAELLLGKLYYE-GKWVPADAKAAEAHFEKAV-----GRE----VAADYYLGQ 326 (452)
T ss_dssp CCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHH-CSSSCCCHHHHHHHHHTTT-----TTC----HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHC----C----CHHHHHHHHHHHHc-CCCCCCCHHHHHHHHHHHh-----CCC----HHHHHHHHH
Confidence 999999999999843 4 35688999999995 7 9999999999998 222 357899999
Q ss_pred HHHH----hcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHc----cCCHHHHHHHHHHHhhc
Q 022992 161 YAAE----LEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC----KGDVVAITNALERYQDM 222 (289)
Q Consensus 161 ~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~----~gd~~~A~~~~~~~~~~ 222 (289)
+|.. ..++++|+.+|+++... +.....+++|.+|.. ..|...|...|+++.+.
T Consensus 327 ~y~~G~g~~~d~~~A~~~~~~Aa~~---------g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 327 IYRRGYLGKVYPQKALDHLLTAARN---------GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp HHHTTTTSSCCHHHHHHHHHHHHTT---------TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred HHHCCCCCCcCHHHHHHHHHHHHhh---------ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 8887 34999999999999731 223456788888863 35899999999998763
No 163
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.92 E-value=3.7e-09 Score=90.04 Aligned_cols=89 Identities=21% Similarity=0.263 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHH
Q 022992 7 RAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEA 72 (289)
Q Consensus 7 ~a~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~a 72 (289)
.+..+...|...++. |+|++|+..|.+| |.+|...|++++|+..|.+++++... .
T Consensus 3 ~a~~~~~~g~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~ 71 (281)
T 2c2l_A 3 SAQELKEQGNRLFVG-----RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ------S 71 (281)
T ss_dssp CHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT------C
T ss_pred hHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------C
Confidence 345555556555552 6888888888887 56677888888888888888876332 2
Q ss_pred HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcC
Q 022992 73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIG 106 (289)
Q Consensus 73 a~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g 106 (289)
..++..+|.+|... ++++|+.+|++++.+.+...
T Consensus 72 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 72 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 45777888888766 88888888888888887653
No 164
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.90 E-value=2.5e-08 Score=90.12 Aligned_cols=96 Identities=8% Similarity=0.034 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-C-ccchHHHHHHHHHHHH
Q 022992 87 SSNEAISCLEQAVNMFCDI--GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE-E-VTTSANQCKQKVAQYA 162 (289)
Q Consensus 87 ~~~~A~~~~~~A~~~~~~~--g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~-~-~~~~~~~~~~~l~~~~ 162 (289)
++++|+..|++++++..+. .+....+.++.++|.+|..+|++++|+.+|++++++++.. | +.+..+..+++||.+|
T Consensus 313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~ 392 (433)
T 3qww_A 313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLY 392 (433)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 8999999999999998764 4567899999999999999999999999999999998864 3 4466778999999999
Q ss_pred HHhcCHHHHHHHHHHHHHHH
Q 022992 163 AELEQYHKSIEIYEEIARQS 182 (289)
Q Consensus 163 ~~~g~~~~A~~~~~~a~~~~ 182 (289)
..+|+|++|+.+|++++.+.
T Consensus 393 ~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 393 MGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHHH
Confidence 99999999999999997543
No 165
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.90 E-value=8.4e-08 Score=88.69 Aligned_cols=187 Identities=12% Similarity=0.105 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcc--------CCHH-------HHHHHHHHHHH-HHHhcCCHHHHHH
Q 022992 50 DKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK--------TSSN-------EAISCLEQAVN-MFCDIGRLSMAAR 113 (289)
Q Consensus 50 ~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~--------~~~~-------~A~~~~~~A~~-~~~~~g~~~~~a~ 113 (289)
..+...|++++...... ...+...|.++.. ++++ +|+..|++|+. +.+. ...
T Consensus 255 ~~a~~~y~~al~~~p~~------~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~------~~~ 322 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHH------PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK------NML 322 (530)
T ss_dssp HHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS------CHH
T ss_pred HHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc------cHH
Confidence 36677888888875432 4567777777753 3665 89999999986 5442 345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchh
Q 022992 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK 193 (289)
Q Consensus 114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 193 (289)
.+..+|.++...|++++|...|++++++.+.. ...++..++.++...|++++|.++|++++... + .. .
T Consensus 323 l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~---~-~~---~ 390 (530)
T 2ooe_A 323 LYFAYADYEESRMKYEKVHSIYNRLLAIEDID-----PTLVYIQYMKFARRAEGIKSGRMIFKKAREDA---R-TR---H 390 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT---T-CC---T
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhCccccC-----chHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc---C-Cc---h
Confidence 88999999999999999999999999864321 22478899999999999999999999997321 1 11 1
Q ss_pred hHHHHH-HHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-cccCHHHHHHHHHhccccCCCch
Q 022992 194 GHLLNA-GICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASM-DEEDIAKFTDVVKEFDSMTPLDP 265 (289)
Q Consensus 194 ~~~~~~-~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~-~~~d~~~~~~al~~~~~~~~~d~ 265 (289)
..+... .+++...|+.+.|+..|+++++..|.. . .+...++... ..|+.+..+...+..-...+++|
T Consensus 391 ~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~---~--~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~ 459 (530)
T 2ooe_A 391 HVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI---P--EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 459 (530)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC---H--HHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCC---H--HHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH
Confidence 122222 233456899999999999998876643 2 3344555544 36776555444444433344444
No 166
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.90 E-value=6.2e-08 Score=89.58 Aligned_cols=189 Identities=11% Similarity=0.005 Sum_probs=130.1
Q ss_pred cCCHH-------HHHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 022992 46 AKSWD-------KAGATYVKLAN-CHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYK 116 (289)
Q Consensus 46 ~g~~~-------~A~~~~~~a~~-~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~ 116 (289)
.|+++ +|..+|.+|++ +.. .....+...+.++... ++++|...|++++++.+. + ...++.
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p------~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~---~~~~~~ 360 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLK------KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI--D---PTLVYI 360 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCS------SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS--C---HHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc--C---chHHHH
Confidence 68876 88888888886 422 1245777888888766 999999999999986332 2 235899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHHhhccccccchhhH
Q 022992 117 EIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQY-AAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGH 195 (289)
Q Consensus 117 ~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 195 (289)
..|.++...|++++|+..|++|++..+.. ..++...+.+ +...|++++|..+|++++.....+ ...
T Consensus 361 ~~~~~~~~~~~~~~A~~~~~~Al~~~~~~------~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~-------~~~ 427 (530)
T 2ooe_A 361 QYMKFARRAEGIKSGRMIFKKAREDARTR------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI-------PEY 427 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCTTCC------THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC-------HHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhccCCc------hHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCC-------HHH
Confidence 99999988899999999999999864321 1233333433 346899999999999998654321 235
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-cccCHHHHHHHHHhccc
Q 022992 196 LLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASM-DEEDIAKFTDVVKEFDS 259 (289)
Q Consensus 196 ~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~-~~~d~~~~~~al~~~~~ 259 (289)
+...+......|+...|+..|++++...+.-+... ..+....+... ..||.+......+....
T Consensus 428 ~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~-~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 428 VLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS-GEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGC-HHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56677777889999999999999988654422111 22333333322 36787655554444333
No 167
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.89 E-value=3.3e-08 Score=72.93 Aligned_cols=101 Identities=11% Similarity=0.064 Sum_probs=82.6
Q ss_pred HHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHH
Q 022992 76 YVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQC 154 (289)
Q Consensus 76 ~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~ 154 (289)
+...|.++... ++++|+.+|++++...+... ....++..+|.++...|++++|+.+|++++...+... ....+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~ 78 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGV---YTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD---KAAGG 78 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSST---THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST---THHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCc---ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc---ccHHH
Confidence 45566776555 99999999999988876443 2456889999999999999999999999999876542 24568
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992 155 KQKVAQYAAELEQYHKSIEIYEEIARQS 182 (289)
Q Consensus 155 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 182 (289)
+..+|.++..+|++++|+..|++++...
T Consensus 79 ~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 79 LLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 8999999999999999999999998543
No 168
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.88 E-value=1.2e-08 Score=72.78 Aligned_cols=103 Identities=17% Similarity=0.084 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccch
Q 022992 113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGV 192 (289)
Q Consensus 113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 192 (289)
.++..+|.++...|++++|+.+|++++++.+.. ..++..+|.++...|++++|+.+|++++..... ...
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~ 75 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE------SKYWLMKGKALYNLERYEEAVDCYNYVINVIED-----EYN 75 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC-----TTC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-----cch
Confidence 356788999999999999999999999886542 357889999999999999999999999743211 012
Q ss_pred hhHHHHHHHHHHcc-CCHHHHHHHHHHHhhcCCCC
Q 022992 193 KGHLLNAGICQLCK-GDVVAITNALERYQDMDPTF 226 (289)
Q Consensus 193 ~~~~~~~~~~~l~~-gd~~~A~~~~~~~~~~~~~~ 226 (289)
...+..++.++... |++.+|...+++.....|..
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 76 KDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 34567888999999 99999999999998877653
No 169
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.88 E-value=2.3e-09 Score=93.92 Aligned_cols=141 Identities=11% Similarity=-0.021 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcC------CHHH-----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 022992 73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIG------RLSM-----AARYYKEIAELYESEHNIEQTIVFFEKAAD 140 (289)
Q Consensus 73 a~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g------~~~~-----~a~~l~~la~~~~~~g~~~~A~~~y~~A~~ 140 (289)
+..+...|.++... ++++|+.+|++|+.+.+... +... ...++.++|.++..+|++++|+.+|++|++
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455556666554 66666666666665543211 0000 113889999999999999999999999999
Q ss_pred HHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHH-HHccCCHHHHHHHHHHH
Q 022992 141 MFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGIC-QLCKGDVVAITNALERY 219 (289)
Q Consensus 141 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~l~~gd~~~A~~~~~~~ 219 (289)
+.+.. ..++.++|.++..+|+|++|+..|++++.....+ ...+..++.+ ....+....+...|.+.
T Consensus 259 ~~p~~------~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~-------~~a~~~L~~l~~~~~~~~~~a~~~~~~~ 325 (338)
T 2if4_A 259 EEEKN------PKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD-------KAIRRELRALAEQEKALYQKQKEMYKGI 325 (338)
T ss_dssp HCTTC------HHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------------------
T ss_pred hCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 86542 3578999999999999999999999987433221 1122334434 23345566777777777
Q ss_pred hhcCCCC
Q 022992 220 QDMDPTF 226 (289)
Q Consensus 220 ~~~~~~~ 226 (289)
+...|..
T Consensus 326 l~~~p~~ 332 (338)
T 2if4_A 326 FKGKDEG 332 (338)
T ss_dssp -------
T ss_pred hCCCCCC
Confidence 6665554
No 170
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.88 E-value=3e-08 Score=71.92 Aligned_cols=117 Identities=19% Similarity=0.306 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHH
Q 022992 32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM 110 (289)
Q Consensus 32 A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~ 110 (289)
....+...+.++...|++++|...|.+++..... ....+..+|.++... ++++|+.++++++...+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----- 76 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----- 76 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-----
Confidence 3556777888999999999999999999987432 145778889998777 9999999999999875432
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhc
Q 022992 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE 166 (289)
Q Consensus 111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 166 (289)
..++..+|.++...|++++|+.+|++++++.+.. ..++..++.++...|
T Consensus 77 -~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 77 -AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAKQNLGNAKQKQG 125 (125)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHhcc
Confidence 4578899999999999999999999999886543 246777887776654
No 171
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.86 E-value=4e-08 Score=88.76 Aligned_cols=108 Identities=3% Similarity=-0.053 Sum_probs=90.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc--Cccch
Q 022992 75 AYVDAAHCYKKTSSNEAISCLEQAVNMFCDI--GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE--EVTTS 150 (289)
Q Consensus 75 ~~~~~a~~~~~~~~~~A~~~~~~A~~~~~~~--g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~--~~~~~ 150 (289)
.+..+..++.+.++++|+..+++++++..+. .+....+.++.++|.+|..+|++++|+.+|++++++++.. ...+.
T Consensus 290 ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~ 369 (429)
T 3qwp_A 290 SLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPV 369 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChH
Confidence 3444555556669999999999999887543 3566789999999999999999999999999999998764 34466
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992 151 ANQCKQKVAQYAAELEQYHKSIEIYEEIARQS 182 (289)
Q Consensus 151 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 182 (289)
.+..+++||.+|..+|+|++|+.+|++++...
T Consensus 370 ~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 370 RGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIM 401 (429)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 77899999999999999999999999997543
No 172
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.85 E-value=1.8e-09 Score=77.54 Aligned_cols=99 Identities=11% Similarity=0.074 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchH
Q 022992 73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSA 151 (289)
Q Consensus 73 a~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~ 151 (289)
+..+..+|.++... ++++|+.+|++++.+.+.. +.++.++|.++...|++++|+.+|++++++.+..+.....
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 77 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN------PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHH
Confidence 45778888888766 9999999999999986643 4689999999999999999999999999998877555556
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHH
Q 022992 152 NQCKQKVAQYAAELEQYHKSIEIYEE 177 (289)
Q Consensus 152 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 177 (289)
..++..+|.++..+|++++|+..+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 77889999999999988887766544
No 173
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.85 E-value=4.1e-08 Score=70.55 Aligned_cols=96 Identities=13% Similarity=0.151 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchH
Q 022992 73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSA 151 (289)
Q Consensus 73 a~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~ 151 (289)
+..+...|.++... ++++|+.+|++++...+.. ..++..+|.++...|++++|+.+|++++++.+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------ 71 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW------ 71 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc------
Confidence 45677778888666 9999999999998876543 4588999999999999999999999999986542
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992 152 NQCKQKVAQYAAELEQYHKSIEIYEEIAR 180 (289)
Q Consensus 152 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 180 (289)
..++..+|.++...|++++|+.+|++++.
T Consensus 72 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 72 GKGYSRKAAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 35789999999999999999999999873
No 174
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.85 E-value=6.1e-09 Score=76.26 Aligned_cols=87 Identities=14% Similarity=0.177 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhc
Q 022992 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE 166 (289)
Q Consensus 87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 166 (289)
++++|+.+|++|+++. .+......++.++|.++...|++++|+.+|++++++.+.. ..++..+|.++..+|
T Consensus 5 ~~~~A~~~~~~al~~~---~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g 75 (117)
T 3k9i_A 5 LEAQAVPYYEKAIASG---LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH------QALRVFYAMVLYNLG 75 (117)
T ss_dssp --CCCHHHHHHHHSSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHcC---CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHcC
Confidence 6788999999998762 1123456789999999999999999999999999987654 367899999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 022992 167 QYHKSIEIYEEIARQS 182 (289)
Q Consensus 167 ~~~~A~~~~~~a~~~~ 182 (289)
++++|+..|++++...
T Consensus 76 ~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 76 RYEQGVELLLKIIAET 91 (117)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999998554
No 175
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.84 E-value=1.6e-09 Score=99.43 Aligned_cols=119 Identities=16% Similarity=0.153 Sum_probs=92.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022992 40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI 118 (289)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~l 118 (289)
|.++...|++++|+.+|.+++++.... +.++.++|.+|... ++++|+.+|++|+++.+. .+.++.++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~------~~~~~~~l 80 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSN------AIYYGNRSLAYLRTECYGYALGDATRAIELDKK------YIKGYYRR 80 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT------CHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------CHHHHHHH
Confidence 445556777888888888888774322 67889999999877 999999999999998543 25689999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHH--HHHhcCHHHHHHHHH
Q 022992 119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQY--AAELEQYHKSIEIYE 176 (289)
Q Consensus 119 a~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 176 (289)
|.++..+|++++|+.+|++|+++.+... .++..++.+ +...|++++|++.++
T Consensus 81 g~~~~~~g~~~eA~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 81 AASNMALGKFRAALRDYETVVKVKPHDK------DAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCT------THHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999876543 356667777 888999999999999
No 176
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=7.2e-08 Score=72.48 Aligned_cols=106 Identities=10% Similarity=0.051 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccccc
Q 022992 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKY 190 (289)
Q Consensus 111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 190 (289)
.+..+..+|..+...|++++|+.+|++++++.+.. .....++..+|.++...|++++|+.+|++++.....
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------ 97 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATP---QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG------ 97 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc---hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc------
Confidence 35677788888888888888888888888764421 123467788888888888888888888888744211
Q ss_pred chhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC
Q 022992 191 GVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTF 226 (289)
Q Consensus 191 ~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~ 226 (289)
....++.+|.++...|+++.|...|++++.+.|..
T Consensus 98 -~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 132 (148)
T 2dba_A 98 -DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN 132 (148)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSC
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 12345677888888888888888888888776653
No 177
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.81 E-value=6.5e-09 Score=90.98 Aligned_cols=138 Identities=17% Similarity=0.129 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc------CCHHHH-----HHHHHHHHHHHccC-CHHHHHHHHHHHH
Q 022992 32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKL------ESKHEA-----AQAYVDAAHCYKKT-SSNEAISCLEQAV 99 (289)
Q Consensus 32 A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~a-----a~~~~~~a~~~~~~-~~~~A~~~~~~A~ 99 (289)
.+..+...|..+...|++++|+.+|.+++.+.... +....+ ..++.++|.+|... ++++|+.+|++++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445566677777788888888888877664221 111111 13789999999887 9999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Q 022992 100 NMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYA-AELEQYHKSIEIYEEI 178 (289)
Q Consensus 100 ~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~a 178 (289)
.+.+.. ..++.++|.++..+|++++|+.+|++|+++.+... .++..++.+. ...+..+++...|.++
T Consensus 258 ~~~p~~------~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~------~a~~~L~~l~~~~~~~~~~a~~~~~~~ 325 (338)
T 2if4_A 258 TEEEKN------PKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDK------AIRRELRALAEQEKALYQKQKEMYKGI 325 (338)
T ss_dssp HHCTTC------HHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------
T ss_pred HhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 986533 46899999999999999999999999999876532 4567777774 4456778888888888
Q ss_pred HHH
Q 022992 179 ARQ 181 (289)
Q Consensus 179 ~~~ 181 (289)
+..
T Consensus 326 l~~ 328 (338)
T 2if4_A 326 FKG 328 (338)
T ss_dssp ---
T ss_pred hCC
Confidence 643
No 178
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=1.3e-07 Score=71.11 Aligned_cols=100 Identities=10% Similarity=0.002 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchH
Q 022992 73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSA 151 (289)
Q Consensus 73 a~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~ 151 (289)
+..+...|.++... ++++|+.+|++++.+.+ +......++.++|.++...|++++|+.+|++++.+.+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------ 98 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDA---TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD------ 98 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCC---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc---cchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC------
Confidence 45666777777665 88888888888877543 333457789999999999999999999999999885542
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992 152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQ 181 (289)
Q Consensus 152 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 181 (289)
..++..+|.++..+|++++|+.+|++++..
T Consensus 99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 99 VKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 357889999999999999999999999754
No 179
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.77 E-value=5e-09 Score=74.85 Aligned_cols=95 Identities=9% Similarity=0.075 Sum_probs=78.8
Q ss_pred HHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHH
Q 022992 75 AYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQ 153 (289)
Q Consensus 75 ~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~ 153 (289)
.+..+|.++... ++++|+.++++++.+.+.. ..++..+|.++...|++++|+.+|++++++.+.. ....
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~ 77 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE------SKYWLMKGKALYNLERYEEAVDCYNYVINVIEDE----YNKD 77 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCT----TCHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc----chHH
Confidence 456678888666 9999999999999875432 3578899999999999999999999999886541 1235
Q ss_pred HHHHHHHHHHHh-cCHHHHHHHHHHHH
Q 022992 154 CKQKVAQYAAEL-EQYHKSIEIYEEIA 179 (289)
Q Consensus 154 ~~~~l~~~~~~~-g~~~~A~~~~~~a~ 179 (289)
++..+|.++..+ |++++|++++++++
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 78 VWAAKADALRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HHHHHHHHHTTCSSCSHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 789999999999 99999999999986
No 180
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.77 E-value=8e-08 Score=72.75 Aligned_cols=108 Identities=13% Similarity=0.242 Sum_probs=88.7
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh-
Q 022992 47 KSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES- 124 (289)
Q Consensus 47 g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~- 124 (289)
+++++|+..|.++++. |++. +. +|.+|... .+++|+.+|++|++. |+ +.+..++|.+|..
T Consensus 9 ~d~~~A~~~~~~aa~~----g~~~----a~--lg~~y~~g~~~~~A~~~~~~Aa~~----g~----~~a~~~Lg~~y~~G 70 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL----NEMF----GC--LSLVSNSQINKQKLFQYLSKACEL----NS----GNGCRFLGDFYENG 70 (138)
T ss_dssp HHHHHHHHHHHHHHHT----TCTT----HH--HHHHTCTTSCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHcC----CCHh----hh--HHHHHHcCCCHHHHHHHHHHHHcC----CC----HHHHHHHHHHHHcC
Confidence 4678888888888754 3332 22 89999887 888999999999875 43 5688999999998
Q ss_pred ---cCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHH
Q 022992 125 ---EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAE----LEQYHKSIEIYEEIAR 180 (289)
Q Consensus 125 ---~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~ 180 (289)
.+++++|+.+|++|++. +. ..+..++|.+|.. .+++++|+.+|+++..
T Consensus 71 ~g~~~d~~~A~~~~~~Aa~~----g~----~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 71 KYVKKDLRKAAQYYSKACGL----ND----QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHcC----CC----HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 78999999999999875 22 3578999999999 8999999999999973
No 181
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.77 E-value=2.4e-08 Score=84.65 Aligned_cols=131 Identities=16% Similarity=0.098 Sum_probs=97.1
Q ss_pred HHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHH
Q 022992 80 AHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKV 158 (289)
Q Consensus 80 a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l 158 (289)
+.++... ++++|.+.|...+. +.+... ....+|.++...+++++|+.+|+++...- ++.....++..+
T Consensus 109 A~~L~~~g~y~eA~~~l~~~~~-----~~p~~~--~~~~~a~l~~~~~r~~dA~~~l~~a~~~~----d~~~~~~a~~~L 177 (282)
T 4f3v_A 109 AACEAAQGNYADAMEALEAAPV-----AGSEHL--VAWMKAVVYGAAERWTDVIDQVKSAGKWP----DKFLAGAAGVAH 177 (282)
T ss_dssp HHHHHHHTCHHHHHHHHTSSCC-----TTCHHH--HHHHHHHHHHHTTCHHHHHHHHTTGGGCS----CHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHh-----cCCchH--HHHHHHHHHHHcCCHHHHHHHHHHhhccC----CcccHHHHHHHH
Confidence 4444333 88888888776654 334344 77888889999999999999998664421 222334688999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992 159 AQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT 225 (289)
Q Consensus 159 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~ 225 (289)
|.++..+|++++|+..|++++... ..+ . -.....++.|+|+..+|+.++|+..|++.....|.
T Consensus 178 G~al~~LG~~~eAl~~l~~a~~g~-~~P--~-~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 178 GVAAANLALFTEAERRLTEANDSP-AGE--A-CARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTST-TTT--T-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHCCCHHHHHHHHHHHhcCC-CCc--c-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 999999999999999999996211 001 0 03345678899999999999999999999988775
No 182
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.75 E-value=7.7e-09 Score=92.81 Aligned_cols=191 Identities=9% Similarity=0.129 Sum_probs=71.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHH-------------HH
Q 022992 37 DKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVN-------------MF 102 (289)
Q Consensus 37 ~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~-------------~~ 102 (289)
...|.++...|++++|+++|.++- + ...+..++.++... ++++|+.+++.+.. .|
T Consensus 36 s~La~A~l~~g~~~eAIdsfika~-------D----~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y 104 (449)
T 1b89_A 36 SQLAKAQLQKGMVKEAIDSYIKAD-------D----PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFAL 104 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHcCC-------C----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHH
Confidence 355788889999999999998752 2 12555556666555 77888888777763 33
Q ss_pred HhcCCHHHH--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHH
Q 022992 103 CDIGRLSMA--------ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEI 174 (289)
Q Consensus 103 ~~~g~~~~~--------a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 174 (289)
.+.|+...+ ...+.++|..+...|++++|+.+|.++ ..+..+|.++..+|+|++|++.
T Consensus 105 ~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------------~n~~~LA~~L~~Lg~yq~AVea 170 (449)
T 1b89_A 105 AKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDG 170 (449)
T ss_dssp ----CHHHHTTTTTCC----------------CTTTHHHHHHHT--------------TCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------------hhHHHHHHHHHHhccHHHHHHH
Confidence 344444332 237888888888889999999998866 2467889999999999999999
Q ss_pred HHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccCHHHHHHHH
Q 022992 175 YEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVV 254 (289)
Q Consensus 175 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d~~~~~~al 254 (289)
|+++. ....+..++.++...|++..|..+... +. ..++. +..++..+. +...+.+++
T Consensus 171 ~~KA~------------~~~~Wk~v~~aCv~~~ef~lA~~~~l~---L~----~~ad~--l~~lv~~Ye--k~G~~eEai 227 (449)
T 1b89_A 171 ARKAN------------STRTWKEVCFACVDGKEFRLAQMCGLH---IV----VHADE--LEELINYYQ--DRGYFEELI 227 (449)
T ss_dssp HHHHT------------CHHHHHHHHHHHHHTTCHHHHHHTTTT---TT----TCHHH--HHHHHHHHH--HTTCHHHHH
T ss_pred HHHcC------------CchhHHHHHHHHHHcCcHHHHHHHHHH---HH----hCHhh--HHHHHHHHH--HCCCHHHHH
Confidence 98882 112345556666778888888655432 21 12221 334555553 123455555
Q ss_pred HhccccCCCchhHHHHHHHHH
Q 022992 255 KEFDSMTPLDPWKTTLLLRVK 275 (289)
Q Consensus 255 ~~~~~~~~~d~~~~~~~~~~~ 275 (289)
+-++..-.+|+-...++..+.
T Consensus 228 ~lLe~aL~le~ah~~~ftel~ 248 (449)
T 1b89_A 228 TMLEAALGLERAHMGMFTELA 248 (449)
T ss_dssp HHHHHHTTSTTCCHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHH
Confidence 555555556655555555543
No 183
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=98.75 E-value=4.4e-05 Score=67.63 Aligned_cols=245 Identities=9% Similarity=0.018 Sum_probs=175.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 022992 36 FDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT--SSNEAISCLEQAVNMFCDIGRLSMAAR 113 (289)
Q Consensus 36 ~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~--~~~~A~~~~~~A~~~~~~~g~~~~~a~ 113 (289)
..+.+..|...|+.++-.++.......+.... -..++....++-..+... ..+.-++.+..+++-.........-..
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSIS-KAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSC-HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34558899999999999888887776665543 345677777888877665 566777888888877777777666666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchh
Q 022992 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK 193 (289)
Q Consensus 114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 193 (289)
.-.++|..|...|+|.+|...+.+...-....++.....+++..-..+|..++++.++-.+|.++......-...+.-.+
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 77799999999999999999999999988877766677788888889999999999999999999643321100011112
Q ss_pred hHHHHHHHHHH-ccCCHHHHHHHHHHHhhcCCCCC------------------------------------CchHHHHHH
Q 022992 194 GHLLNAGICQL-CKGDVVAITNALERYQDMDPTFS------------------------------------GTREYRLLS 236 (289)
Q Consensus 194 ~~~~~~~~~~l-~~gd~~~A~~~~~~~~~~~~~~~------------------------------------~~~e~~~l~ 236 (289)
......|+.|+ ..+|+..|...|-++...+...+ ..++...+.
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~~l~ 260 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMK 260 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHHHHH
Confidence 22334588888 88999888666554321111100 134455567
Q ss_pred HHHHHHcccCHHHHHHHHHhccccCCCchhHHHHHHHHHHhcccc
Q 022992 237 DIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAK 281 (289)
Q Consensus 237 ~l~~a~~~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~~~~~ 281 (289)
.|+.++..+|...|...+..|...-..||....-+..+.+.++-.
T Consensus 261 ~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~ 305 (394)
T 3txn_A 261 SVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQ 305 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 788888889999999999998876667887666666666555443
No 184
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.71 E-value=2.5e-07 Score=69.98 Aligned_cols=109 Identities=12% Similarity=0.165 Sum_probs=89.5
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHH--
Q 022992 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAE-- 164 (289)
Q Consensus 87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~-- 164 (289)
++++|+.+|++|.+. |++... +|.+|...+..++|+.+|++|++. ++ ..+..++|.+|..
T Consensus 10 d~~~A~~~~~~aa~~----g~~~a~------lg~~y~~g~~~~~A~~~~~~Aa~~----g~----~~a~~~Lg~~y~~G~ 71 (138)
T 1klx_A 10 DLKKAIQYYVKACEL----NEMFGC------LSLVSNSQINKQKLFQYLSKACEL----NS----GNGCRFLGDFYENGK 71 (138)
T ss_dssp HHHHHHHHHHHHHHT----TCTTHH------HHHHTCTTSCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHcC----CCHhhh------HHHHHHcCCCHHHHHHHHHHHHcC----CC----HHHHHHHHHHHHcCC
Confidence 788999999999754 443322 999999888999999999999885 22 3578999999998
Q ss_pred --hcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHc----cCCHHHHHHHHHHHhhc
Q 022992 165 --LEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC----KGDVVAITNALERYQDM 222 (289)
Q Consensus 165 --~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~----~gd~~~A~~~~~~~~~~ 222 (289)
.+++++|+.+|+++... +....++++|.+|.. .+|...|...|+++.+.
T Consensus 72 g~~~d~~~A~~~~~~Aa~~---------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 72 YVKKDLRKAAQYYSKACGL---------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp SSCCCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CCCccHHHHHHHHHHHHcC---------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 89999999999999732 223456788999887 78999999999999875
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.68 E-value=4e-08 Score=71.83 Aligned_cols=91 Identities=14% Similarity=0.086 Sum_probs=74.2
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 022992 46 AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES 124 (289)
Q Consensus 46 ~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~ 124 (289)
.|++++|+.+|.+++++. .+......++.++|.+|... ++++|+.+|++++++.+.. ..++..+|.++..
T Consensus 3 ~g~~~~A~~~~~~al~~~---~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~ 73 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASG---LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH------QALRVFYAMVLYN 73 (117)
T ss_dssp ----CCCHHHHHHHHSSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcC---CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHH
Confidence 578899999999998752 11334577899999999877 9999999999999997755 5689999999999
Q ss_pred cCCHHHHHHHHHHHHHHHhcc
Q 022992 125 EHNIEQTIVFFEKAADMFQNE 145 (289)
Q Consensus 125 ~g~~~~A~~~y~~A~~~~~~~ 145 (289)
.|++++|+.+|++++...+..
T Consensus 74 ~g~~~~A~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 74 LGRYEQGVELLLKIIAETSDD 94 (117)
T ss_dssp HTCHHHHHHHHHHHHHHHCCC
T ss_pred cCCHHHHHHHHHHHHHhCCCc
Confidence 999999999999999987654
No 186
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.66 E-value=2e-08 Score=71.90 Aligned_cols=96 Identities=10% Similarity=0.003 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccc
Q 022992 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG 191 (289)
Q Consensus 112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 191 (289)
+..+..+|.++...|++++|+.+|++|+++.+.. ..++.++|.++..+|++++|+..|++++......+. ...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~ 76 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN------PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEH-VAI 76 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTS-HHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccH-HHH
Confidence 5678999999999999999999999999986643 367899999999999999999999999843322111 011
Q ss_pred hhhHHHHHHHHHHccCCHHHHHH
Q 022992 192 VKGHLLNAGICQLCKGDVVAITN 214 (289)
Q Consensus 192 ~~~~~~~~~~~~l~~gd~~~A~~ 214 (289)
....+..++.++...|+...|..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 77 RSKLQYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHHHHHHhHhhhHh
Confidence 13445667777777665544433
No 187
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=98.63 E-value=6.4e-05 Score=64.78 Aligned_cols=241 Identities=10% Similarity=0.057 Sum_probs=162.5
Q ss_pred HHHHHHHHHhhccCCCCCCCH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcc
Q 022992 9 EEFEKKAEKKLNGWGLFGSKY---EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK 85 (289)
Q Consensus 9 ~~~~~~A~~~~k~~~~~~~~~---~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~ 85 (289)
.+.+++-++..+. |+| -+|.+.|.-...-|..+++|++|++.....+..+-+.|....++.....+..+|.+
T Consensus 13 ~~~i~rl~~~I~~-----G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~ 87 (336)
T 3lpz_A 13 ERIIARLQRRIAE-----GQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQ 87 (336)
T ss_dssp HHHHHHHHHHHHH-----CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-----CCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHH
Confidence 3444444444442 799 99999999999999999999999999999999999999888888877777788866
Q ss_pred C--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC-ccchHHHHHHHHHHHH
Q 022992 86 T--SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE-VTTSANQCKQKVAQYA 162 (289)
Q Consensus 86 ~--~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~-~~~~~~~~~~~l~~~~ 162 (289)
. .+++ +...+.++++...... .++ =..+..+|+.--.+.| .+.+-...+..+|.++
T Consensus 88 ~~~~~~~--~~~~rL~~L~~~~~~~------------------~p~-r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~ 146 (336)
T 3lpz_A 88 AGQRVDG--ASRGKLLGCLRLFQPG------------------EPV-RKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLY 146 (336)
T ss_dssp HTCCCCH--HHHHHHHHHHTTSCTT------------------CHH-HHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHH
T ss_pred cCCCCCH--HHHHHHHHHHHhCCCC------------------CcH-HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Confidence 5 3332 4555555555544321 111 1223334443333222 2334446778888888
Q ss_pred HHhcCHHHHHHHHH-----------HHH-HHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhc----CCC-
Q 022992 163 AELEQYHKSIEIYE-----------EIA-RQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDM----DPT- 225 (289)
Q Consensus 163 ~~~g~~~~A~~~~~-----------~a~-~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~----~~~- 225 (289)
.+-++|.+|..+|- +.+ ....... .....-+..++.+.|++.++...|..+++.+++. .+.
T Consensus 147 ~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~--~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L 224 (336)
T 3lpz_A 147 VEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDE--SHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGL 224 (336)
T ss_dssp HHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSC--GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTS
T ss_pred HccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCc
Confidence 88888888877651 111 1111111 1122233456678899999999999988887642 232
Q ss_pred --------------CCCchHHHHHHHHHHHHcccCHHHHHHHHHhccccCCCch-hHHHHHHHHHHh
Q 022992 226 --------------FSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDP-WKTTLLLRVKEK 277 (289)
Q Consensus 226 --------------~~~~~e~~~l~~l~~a~~~~d~~~~~~al~~~~~~~~~d~-~~~~~~~~~~~~ 277 (289)
|+..+--.++.-|+.+++.+.++.|......|.....-|| ....-+.+|.+.
T Consensus 225 ~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q~~~~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~ 291 (336)
T 3lpz_A 225 TVQNIGSQSAELRIFPSLPLLNFISMLLLSVQKGSPDLFRQLKSKYEANLNELNGIWDTALELIAEM 291 (336)
T ss_dssp CCEESCC--CCCEECTTCHHHHHHHHHHHHHHSCCHHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHH
T ss_pred cccccccCCcccccCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHH
Confidence 2334455688888899999999999999999998876677 777888888775
No 188
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.59 E-value=4e-08 Score=75.83 Aligned_cols=89 Identities=16% Similarity=0.083 Sum_probs=70.4
Q ss_pred HcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-C----------HHHHHHHHHHHHHHHHhcCCHHHHHH
Q 022992 45 LAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-S----------SNEAISCLEQAVNMFCDIGRLSMAAR 113 (289)
Q Consensus 45 ~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~----------~~~A~~~~~~A~~~~~~~g~~~~~a~ 113 (289)
..+.|++|+.+|.+++++... -+.++.+.|.++... + +++|+.+|++|+.+.+.. +.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~------~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~------~~ 81 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPL------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK------DE 81 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC------HH
T ss_pred HHhHHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc------HH
Confidence 345678888899998888543 256777788877655 3 569999999999997764 34
Q ss_pred HHHHHHHHHHhcC-----------CHHHHHHHHHHHHHHHhcc
Q 022992 114 YYKEIAELYESEH-----------NIEQTIVFFEKAADMFQNE 145 (289)
Q Consensus 114 ~l~~la~~~~~~g-----------~~~~A~~~y~~A~~~~~~~ 145 (289)
++.++|.+|..+| ++++|+.+|++|+++-+..
T Consensus 82 A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 82 AVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 8899999998774 8999999999999997753
No 189
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.58 E-value=5.3e-07 Score=76.42 Aligned_cols=134 Identities=9% Similarity=-0.065 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHH
Q 022992 34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAA 112 (289)
Q Consensus 34 ~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a 112 (289)
++.-.-+.++...|++++|.+.|..+... .+... .....|.++.+. ++++|+.+++++... .++....
T Consensus 103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~-----~p~~~--~~~~~a~l~~~~~r~~dA~~~l~~a~~~----~d~~~~~ 171 (282)
T 4f3v_A 103 AITMGFAACEAAQGNYADAMEALEAAPVA-----GSEHL--VAWMKAVVYGAAERWTDVIDQVKSAGKW----PDKFLAG 171 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTSSCCT-----TCHHH--HHHHHHHHHHHTTCHHHHHHHHTTGGGC----SCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCchH--HHHHHHHHHHHcCCHHHHHHHHHHhhcc----CCcccHH
Confidence 33444467788899999999999877752 33333 445556666555 999999999866332 2444556
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992 113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ 181 (289)
Q Consensus 113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 181 (289)
.+...+|.++..+|++++|+.+|++++. ....+.....+...+|.++..+|+.++|...|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~---g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEAND---SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT---STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhc---CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 7899999999999999999999999973 11113336678899999999999999999999999744
No 190
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=98.57 E-value=2.8e-05 Score=66.65 Aligned_cols=240 Identities=9% Similarity=0.056 Sum_probs=159.6
Q ss_pred HHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC--
Q 022992 9 EEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-- 86 (289)
Q Consensus 9 ~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-- 86 (289)
.+.+++-++.... |+|-+|.+.|.-...-|..++++++|++.....+..+-+.|....++.....+..+|.+.
T Consensus 14 ~r~l~rl~~~I~~-----G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~ 88 (312)
T 2wpv_A 14 AKTLQRFENKIKA-----GDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEV 88 (312)
T ss_dssp HHHHHHHHHHHHH-----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhc-----cChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCC
Confidence 3344444444442 799999999999999999999999999999999999888898888888777777888665
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCc-cchHHHHHHHHHHHHHHh
Q 022992 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV-TTSANQCKQKVAQYAAEL 165 (289)
Q Consensus 87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~ 165 (289)
.++ .+...+..+++..... ..+ .=..+..+|+.-..+.+. +.+-+..+..+|.++.+-
T Consensus 89 ~~~--~~~~~rl~~l~~~~p~------------------~~~-~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e 147 (312)
T 2wpv_A 89 KVD--DISVARLVRLIAELDP------------------SEP-NLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEG 147 (312)
T ss_dssp CCS--HHHHHHHHHHHTTCCT------------------TCT-THHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHT
T ss_pred CCC--HHHHHHHHHHHHHCCC------------------CCc-hHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhc
Confidence 222 2233444444433221 111 113455555555444332 445557788889999888
Q ss_pred cCHHHHHHHHH-----HH------H-HHHhhc-cccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcC---------
Q 022992 166 EQYHKSIEIYE-----EI------A-RQSLNN-NLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMD--------- 223 (289)
Q Consensus 166 g~~~~A~~~~~-----~a------~-~~~~~~-~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~--------- 223 (289)
|++.+|..+|- .. + ...... ........-+..++.+.+++.|+...|..+|..+.+..
T Consensus 148 ~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~~~~~~ 227 (312)
T 2wpv_A 148 DFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLERFIEKFHPKYE 227 (312)
T ss_dssp TCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHHHCCCEE
T ss_pred CCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcccccc
Confidence 99988888662 11 1 111110 01111122234456778999999999999999886432
Q ss_pred ------CC---CCCchHHHHHHHHHHHHcccCHHHHHHHHHhccccCCCchhHHHHHHHHHHh
Q 022992 224 ------PT---FSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEK 277 (289)
Q Consensus 224 ------~~---~~~~~e~~~l~~l~~a~~~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~ 277 (289)
.. |+..+--.++.-|+.++..++++.|+...+.|...-. .....+.+|.+.
T Consensus 228 ~~~~~~~~~~~~p~~pllnF~~lLl~t~e~~~~~lF~~L~~~Y~~~L~---~~~~~L~~Ig~~ 287 (312)
T 2wpv_A 228 KIDKNGYEIVFFEDYSDLNFLQLLLITCQTKDKSYFLNLKNHYLDFSQ---AYKSELEFLGQE 287 (312)
T ss_dssp EEEETTEEEEEESSCHHHHHHHHHHHHHHHTCHHHHHHHHHHCHHHHH---HTHHHHHHHHHH
T ss_pred cccccccCCCCCCCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 11 2345667888888999988899999999999887743 445677777765
No 191
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.56 E-value=8.9e-08 Score=73.90 Aligned_cols=85 Identities=7% Similarity=0.019 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHHHhccCccchHHHHHH
Q 022992 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNI----------EQTIVFFEKAADMFQNEEVTTSANQCKQ 156 (289)
Q Consensus 87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~----------~~A~~~y~~A~~~~~~~~~~~~~~~~~~ 156 (289)
.+++|+.++++|+++.+.. +..+.++|.++..++++ ++|+..|++|+++.+.. ..++.
T Consensus 17 ~feeA~~~~~~Ai~l~P~~------aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~------~~A~~ 84 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLD------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK------DEAVW 84 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC------HHHHH
T ss_pred HHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc------HHHHH
Confidence 5789999999999997753 44889999999887764 59999999999997753 36889
Q ss_pred HHHHHHHHhc-----------CHHHHHHHHHHHHHHHh
Q 022992 157 KVAQYAAELE-----------QYHKSIEIYEEIARQSL 183 (289)
Q Consensus 157 ~l~~~~~~~g-----------~~~~A~~~~~~a~~~~~ 183 (289)
++|.+|..+| ++++|+++|++++....
T Consensus 85 ~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 85 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 9999999875 89999999999986543
No 192
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.56 E-value=7.5e-07 Score=61.08 Aligned_cols=84 Identities=15% Similarity=0.238 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccc
Q 022992 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLK 189 (289)
Q Consensus 110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 189 (289)
..+.++..+|.++...|++++|+.+|++++++.+.. ..++..+|.++...|++++|+.+|++++.....
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~----- 75 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN----- 75 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-----
Confidence 456788899999999999999999999999876532 357889999999999999999999999754321
Q ss_pred cchhhHHHHHHHHHHcc
Q 022992 190 YGVKGHLLNAGICQLCK 206 (289)
Q Consensus 190 ~~~~~~~~~~~~~~l~~ 206 (289)
....+.+++.++...
T Consensus 76 --~~~~~~~l~~~~~~~ 90 (91)
T 1na3_A 76 --NAEAKQNLGNAKQKQ 90 (91)
T ss_dssp --CHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHhc
Confidence 123455666665543
No 193
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.53 E-value=1.6e-07 Score=68.12 Aligned_cols=82 Identities=9% Similarity=0.018 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCH
Q 022992 89 NEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQY 168 (289)
Q Consensus 89 ~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 168 (289)
++|+.+|++++...+.. +.++..+|.++...|++++|+.+|++++.+.+.. ..++..+|.++..+|++
T Consensus 2 ~~a~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~ 69 (115)
T 2kat_A 2 QAITERLEAMLAQGTDN------MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY------SVAWKWLGKTLQGQGDR 69 (115)
T ss_dssp CCHHHHHHHHHTTTCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCH
T ss_pred hHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHcCCH
Confidence 35788888888765532 4589999999999999999999999999986543 35789999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 022992 169 HKSIEIYEEIARQS 182 (289)
Q Consensus 169 ~~A~~~~~~a~~~~ 182 (289)
++|+..|++++...
T Consensus 70 ~~A~~~~~~al~~~ 83 (115)
T 2kat_A 70 AGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999997543
No 194
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.51 E-value=4e-07 Score=62.48 Aligned_cols=84 Identities=19% Similarity=0.347 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccc
Q 022992 71 EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT 149 (289)
Q Consensus 71 ~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~ 149 (289)
..+..+..+|.++... ++++|+.+|++++.+.+.. ..++..+|.++...|++++|+.+|++++++.+..
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---- 76 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---- 76 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC----
Confidence 4566788889888776 9999999999999885532 4588999999999999999999999999986543
Q ss_pred hHHHHHHHHHHHHHHhc
Q 022992 150 SANQCKQKVAQYAAELE 166 (289)
Q Consensus 150 ~~~~~~~~l~~~~~~~g 166 (289)
..++..+|.++..+|
T Consensus 77 --~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 77 --AEAKQNLGNAKQKQG 91 (91)
T ss_dssp --HHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHHhcC
Confidence 356788888887654
No 195
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.46 E-value=6.8e-06 Score=70.70 Aligned_cols=226 Identities=9% Similarity=-0.007 Sum_probs=150.1
Q ss_pred HHHHHHHHHH--------------HHHHHHcC--CHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHcc-CCHHHH
Q 022992 30 EDAADLFDKA--------------ANSFKLAK--SWDKAGATYVKLANCHLKLES-KHEAAQAYVDAAHCYKK-TSSNEA 91 (289)
Q Consensus 30 ~~A~~~~~~A--------------~~~~~~~g--~~~~A~~~~~~a~~~~~~~~~-~~~aa~~~~~~a~~~~~-~~~~~A 91 (289)
++|+.++.++ +.++...| ++++++.++.+++....+.-. +..-..++..+...... .+++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 5677777776 34455677 999999999999987554321 11112222111111111 378999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcC--
Q 022992 92 ISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIE--QTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQ-- 167 (289)
Q Consensus 92 ~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~--~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-- 167 (289)
+.++.++++..+++-. ++..-+.++...|.++ ++++++.++++..+.+. .++...+.++..+++
T Consensus 130 L~~~~~~l~~~pkny~------aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~------sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 130 FDILEAMLSSDPKNHH------VWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNN------SAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp HHHHHHHHHHCTTCHH------HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHSSGGGC
T ss_pred HHHHHHHHHhCCCCHH------HHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHhccccc
Confidence 9999999998877654 8999999999999988 99999999999866543 477888888888887
Q ss_pred ----HHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCC-HHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH
Q 022992 168 ----YHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGD-VVAITNALERYQDMDPTFSGTREYRLLSDIAASM 242 (289)
Q Consensus 168 ----~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd-~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~ 242 (289)
++++++++.+++...+.+ ..+++..+.+....|. .........++.++.+.-..+. ..+.-+++.+
T Consensus 198 ~~~~~~eEl~~~~~aI~~~p~n-------~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~al~~la~~~ 268 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVKCPQN-------PSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSS--FALETLAKIY 268 (306)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSC-------HHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCH--HHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCCCC-------ccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCH--HHHHHHHHHH
Confidence 999999999998654332 2234444444444444 3334445555544331111222 3455566666
Q ss_pred c-ccCHHHHHHHHHhccccCC-CchhHHHHHHHHHHhcc
Q 022992 243 D-EEDIAKFTDVVKEFDSMTP-LDPWKTTLLLRVKEKLK 279 (289)
Q Consensus 243 ~-~~d~~~~~~al~~~~~~~~-~d~~~~~~~~~~~~~~~ 279 (289)
. .|+ .++|++.|+.+.. +||...+-|.-..+.|+
T Consensus 269 ~~~~~---~~~A~~~~~~l~~~~Dpir~~yW~~~~~~l~ 304 (306)
T 3dra_A 269 TQQKK---YNESRTVYDLLKSKYNPIRSNFWDYQISKLT 304 (306)
T ss_dssp HHTTC---HHHHHHHHHHHHHTTCGGGHHHHHHHHHTCC
T ss_pred HccCC---HHHHHHHHHHHHhccChHHHHHHHHHHhhcc
Confidence 4 444 4667777888775 89999999888777765
No 196
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.44 E-value=1.3e-06 Score=61.93 Aligned_cols=64 Identities=17% Similarity=0.212 Sum_probs=29.6
Q ss_pred HHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992 75 AYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (289)
Q Consensus 75 ~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~ 144 (289)
++..+|.+|... ++++|+.+|++++++.+.... ++..+|.++...|++++|+.+|++++++.+.
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVETDPDYVG------TYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 344444444333 445555555555444333221 4444555555445555555555555544443
No 197
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.43 E-value=1.7e-06 Score=61.27 Aligned_cols=65 Identities=11% Similarity=0.121 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS 182 (289)
Q Consensus 112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 182 (289)
+.++..+|.++...|++++|+.+|++++++.+... .++..+|.++..+|++++|+..|++++...
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYV------GTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 45789999999999999999999999999876543 478999999999999999999999998543
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.41 E-value=8.8e-07 Score=64.10 Aligned_cols=85 Identities=8% Similarity=0.019 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHH
Q 022992 51 KAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIE 129 (289)
Q Consensus 51 ~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~ 129 (289)
+++..|.++++.... ....+..+|.+|... ++++|+.+|++++.+.+.. ..++..+|.++...|+++
T Consensus 3 ~a~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~ 70 (115)
T 2kat_A 3 AITERLEAMLAQGTD------NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY------SVAWKWLGKTLQGQGDRA 70 (115)
T ss_dssp CHHHHHHHHHTTTCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHhCCC------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHcCCHH
Confidence 456677777765332 245788899999777 9999999999999986543 458899999999999999
Q ss_pred HHHHHHHHHHHHHhccCc
Q 022992 130 QTIVFFEKAADMFQNEEV 147 (289)
Q Consensus 130 ~A~~~y~~A~~~~~~~~~ 147 (289)
+|+.+|++++++.+..+.
T Consensus 71 ~A~~~~~~al~~~~~~~~ 88 (115)
T 2kat_A 71 GARQAWESGLAAAQSRGD 88 (115)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcccccc
Confidence 999999999999887654
No 199
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.17 E-value=2e-05 Score=56.26 Aligned_cols=70 Identities=11% Similarity=0.132 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCc-cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992 113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV-TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS 182 (289)
Q Consensus 113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 182 (289)
.-...||..+...++|..|+.+|++|+...+.... ......++..+|.++.++|++++|+.++++++...
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 34568899999999999999999999998865432 24566899999999999999999999999998543
No 200
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.15 E-value=0.00023 Score=61.74 Aligned_cols=196 Identities=9% Similarity=0.040 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC---CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Q 022992 49 WDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT---SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE 125 (289)
Q Consensus 49 ~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~---~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~ 125 (289)
+++++.++..++....+ + -.++..-+-+.... ++++++.++.++++..+++.. +|..-+.++...
T Consensus 90 l~~EL~~~~~~L~~~PK--n----y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~------AW~~R~~vl~~l 157 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK--S----YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFH------CWDYRRFVAAQA 157 (331)
T ss_dssp HHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHh
Confidence 56777777777765433 2 22333334444443 589999999999999887765 888889998888
Q ss_pred CC-HHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHh--------------cCHHHHHHHHHHHHHHHhhcccccc
Q 022992 126 HN-IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL--------------EQYHKSIEIYEEIARQSLNNNLLKY 190 (289)
Q Consensus 126 g~-~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~a~~~~~~~~~~~~ 190 (289)
|. ++++++++.++++..+.+. .++...+.++..+ +.++++++++.+++...+++.
T Consensus 158 ~~~~~eel~~~~~~I~~~p~N~------SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~---- 227 (331)
T 3dss_A 158 AVAPAEELAFTDSLITRNFSNY------SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQ---- 227 (331)
T ss_dssp TCCHHHHHHHHHHHHHHCSCCH------HHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCH----
T ss_pred CcCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCH----
Confidence 88 5999999999999876543 4677888877776 679999999999986654431
Q ss_pred chhhHH-HHHHHHHHccC----------CHHHHHHHHHHHhhcCCCCCCchHHHHHHHHH---HHHc-ccCHHHHHHHHH
Q 022992 191 GVKGHL-LNAGICQLCKG----------DVVAITNALERYQDMDPTFSGTREYRLLSDIA---ASMD-EEDIAKFTDVVK 255 (289)
Q Consensus 191 ~~~~~~-~~~~~~~l~~g----------d~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~---~a~~-~~d~~~~~~al~ 255 (289)
..+ +..+++....| -+.++.+.+++.+++.|... ..+..++ .... .+ ...++..
T Consensus 228 ---SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~-----w~l~~~~~~~~~~~~~~---~~~~~~~ 296 (331)
T 3dss_A 228 ---SAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENK-----WCLLTIILLMRALDPLL---YEKETLQ 296 (331)
T ss_dssp ---HHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHHCTTT---THHHHHH
T ss_pred ---HHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccc-----hHHHHHHHHHHhhcccc---cHHHHHH
Confidence 122 23344433333 36788899999999888641 1122222 1222 22 2334555
Q ss_pred hccccCCCchhHHHHHHHHHHh
Q 022992 256 EFDSMTPLDPWKTTLLLRVKEK 277 (289)
Q Consensus 256 ~~~~~~~~d~~~~~~~~~~~~~ 277 (289)
.+..+..+||.-..-+.-+..+
T Consensus 297 ~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 297 YFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHHHhCcchhhHHHHHHHH
Confidence 5556666777666555554443
No 201
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.11 E-value=0.0001 Score=63.16 Aligned_cols=196 Identities=13% Similarity=0.101 Sum_probs=123.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 022992 37 DKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYY 115 (289)
Q Consensus 37 ~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l 115 (289)
.-+|.++...|++++|+..+.+.+.. +...+...++..++.++... +++.|...+++.....+.. ....-.++
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~----~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~--~~~~d~~l 177 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDN----DEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDT--VSGDNEMI 177 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTS----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHH--HHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcc----CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc--cccchHHH
Confidence 37789999999999999999987543 11123455677788888776 9999999999876654310 00111233
Q ss_pred HHHHHH--HHhcC--CHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh--cc-cc
Q 022992 116 KEIAEL--YESEH--NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN--NN-LL 188 (289)
Q Consensus 116 ~~la~~--~~~~g--~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~--~~-~~ 188 (289)
..++.. ....| ++.+|...|++..+.++.. .....+.+ ++..+|++++|.+.++.+...... +. ..
T Consensus 178 ~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~----~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~ 250 (310)
T 3mv2_B 178 LNLAESYIKFATNKETATSNFYYYEELSQTFPTW----KTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENA 250 (310)
T ss_dssp HHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSH----HHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCc----ccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccC
Confidence 444433 33334 8999999999987655420 11123333 899999999999999976533211 00 00
Q ss_pred ccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccCHHHHHHHHHhcc
Q 022992 189 KYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFD 258 (289)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d~~~~~~al~~~~ 258 (289)
.......+.+++.+....|+ .|.+.+++..++.|.++ ++..+-. --..|.+++..|.
T Consensus 251 ~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp------~i~d~~~-----k~~~Fd~~~~ky~ 307 (310)
T 3mv2_B 251 VLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA------FIKHHQE-----IDAKFDELVRKYD 307 (310)
T ss_dssp HSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH------HHHHHHH-----HHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh------HHHHHHH-----HHHHHHHHHHHhc
Confidence 01233455566666666787 68899999888888764 2222211 1356777777764
No 202
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.08 E-value=0.00075 Score=57.88 Aligned_cols=174 Identities=9% Similarity=-0.022 Sum_probs=124.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHH
Q 022992 26 GSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK---TSSNEAISCLEQAVNMF 102 (289)
Q Consensus 26 ~~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~---~~~~~A~~~~~~A~~~~ 102 (289)
+++|.++...+.. +.......++|+.++.+++.+.... ..+++.-+.+... .++++++.++.+++.+.
T Consensus 29 ~~~y~~~~~~~~a---~~~~~e~s~~aL~~t~~~L~~nP~~------~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n 99 (306)
T 3dra_A 29 DEDYKQIMGLLLA---LMKAEEYSERALHITELGINELASH------YTIWIYRFNILKNLPNRNLYDELDWCEEIALDN 99 (306)
T ss_dssp CHHHHHHHHHHHH---HHHTTCCSHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHH---HHHcCCCCHHHHHHHHHHHHHCcHH------HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC
Confidence 3555555554443 2233334478999999999885432 2344444555432 38999999999999998
Q ss_pred HhcCCHHHHHHHHHHHHHHH----Hhc---CCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHH--HHHH
Q 022992 103 CDIGRLSMAARYYKEIAELY----ESE---HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYH--KSIE 173 (289)
Q Consensus 103 ~~~g~~~~~a~~l~~la~~~----~~~---g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~ 173 (289)
++.-. +++.-+.++ ... +++++++.++.++++..+++- .++..-+.++..+|.++ ++++
T Consensus 100 Pk~y~------aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny------~aW~~R~~vl~~l~~~~~~~EL~ 167 (306)
T 3dra_A 100 EKNYQ------IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNH------HVWSYRKWLVDTFDLHNDAKELS 167 (306)
T ss_dssp TTCCH------HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCTTCHHHHH
T ss_pred cccHH------HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhcccChHHHHH
Confidence 88776 677777777 555 789999999999999877643 57888899999999998 9999
Q ss_pred HHHHHHHHHhhccccccchhhHHHHHHHHHHccCC------HHHHHHHHHHHhhcCCCCC
Q 022992 174 IYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGD------VVAITNALERYQDMDPTFS 227 (289)
Q Consensus 174 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd------~~~A~~~~~~~~~~~~~~~ 227 (289)
++.+++...+.+ ..++...+.+....|. +.++.+.+.+++.++|...
T Consensus 168 ~~~~~i~~d~~N-------~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~ 220 (306)
T 3dra_A 168 FVDKVIDTDLKN-------NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNP 220 (306)
T ss_dssp HHHHHHHHCTTC-------HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHhCCCC-------HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCc
Confidence 999998553222 2345555555555555 7888999999988887643
No 203
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.04 E-value=6.2e-06 Score=57.62 Aligned_cols=61 Identities=10% Similarity=0.105 Sum_probs=50.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992 116 KEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQ-CKQKVAQYAAELEQYHKSIEIYEEIARQS 182 (289)
Q Consensus 116 ~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 182 (289)
.+.|..+...|++++|+..|+++++..+.. .. ++..+|.++..+|++++|+..|++++...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVG------KDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSST------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456778888899999999999999875542 24 78899999999999999999999998543
No 204
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.99 E-value=7.2e-05 Score=69.87 Aligned_cols=158 Identities=8% Similarity=0.014 Sum_probs=116.5
Q ss_pred HcCCH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-C----------HHHHHHHHHHHHHHHHhcCCHHHHH
Q 022992 45 LAKSW-DKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-S----------SNEAISCLEQAVNMFCDIGRLSMAA 112 (289)
Q Consensus 45 ~~g~~-~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~----------~~~A~~~~~~A~~~~~~~g~~~~~a 112 (289)
..|++ ++|+..+.+++++..+. ..+|..-+.+.... + ++++++++.+++...++.-.
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~~------~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~----- 108 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPDF------ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG----- 108 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH-----
T ss_pred HcCCCCHHHHHHHHHHHHHCchh------HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHH-----
Confidence 44544 67799999998875432 23444445555444 3 89999999999998876554
Q ss_pred HHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHhhccccc
Q 022992 113 RYYKEIAELYESEH--NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE-QYHKSIEIYEEIARQSLNNNLLK 189 (289)
Q Consensus 113 ~~l~~la~~~~~~g--~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~ 189 (289)
+|..-+.++...+ ++++++.++.+++++.+.+. .++..-+.+...+| .++++++++.+++...+.+
T Consensus 109 -aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~------~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n---- 177 (567)
T 1dce_A 109 -TWHHRCWLLSRLPEPNWARELELCARFLEADERNF------HCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN---- 177 (567)
T ss_dssp -HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC----
T ss_pred -HHHHHHHHHHHcccccHHHHHHHHHHHHhhccccc------cHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCC----
Confidence 8999999999999 66999999999999877643 57888999999999 9999999999997432221
Q ss_pred cchhhHHHHHHHHHHc--------------cCCHHHHHHHHHHHhhcCCCCC
Q 022992 190 YGVKGHLLNAGICQLC--------------KGDVVAITNALERYQDMDPTFS 227 (289)
Q Consensus 190 ~~~~~~~~~~~~~~l~--------------~gd~~~A~~~~~~~~~~~~~~~ 227 (289)
..++...+.+... .+.++++.+.+.+++.++|...
T Consensus 178 ---~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~ 226 (567)
T 1dce_A 178 ---YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQ 226 (567)
T ss_dssp ---HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred ---ccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCc
Confidence 2344444444332 1457889999999999888754
No 205
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.95 E-value=0.0018 Score=61.55 Aligned_cols=203 Identities=8% Similarity=-0.040 Sum_probs=128.2
Q ss_pred HHHHHcCCHHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc--------C-C--
Q 022992 41 NSFKLAKSWDKAG-ATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI--------G-R-- 107 (289)
Q Consensus 41 ~~~~~~g~~~~A~-~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~--------g-~-- 107 (289)
......|+.++|. ..|.+|...... + ...+...+.+.... ++++|.+.|++++...... . +
T Consensus 351 ~~~~~~~~~~~a~r~il~rAi~~~P~--s----~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~ 424 (679)
T 4e6h_A 351 NYQGEKNTDSTVITKYLKLGQQCIPN--S----AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNES 424 (679)
T ss_dssp HHHHHHSCCTTHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchh
Confidence 3455677778886 888888765332 1 23445556666555 8999999999999875321 1 1
Q ss_pred -----HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Q 022992 108 -----LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE-QYHKSIEIYEEIARQ 181 (289)
Q Consensus 108 -----~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~ 181 (289)
......+|...+.+....|+.+.|...|.+|+...+... ..++...+.+-...+ +++.|.++|++++..
T Consensus 425 ~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~-----~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~ 499 (679)
T 4e6h_A 425 AINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT-----PDIYLENAYIEYHISKDTKTACKVLELGLKY 499 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC-----THHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred hhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 113456788888888888999999999999987632211 235556666665654 599999999999865
Q ss_pred HhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHH-HHHHHHHHHH-cccCHHHHHHHHHhccc
Q 022992 182 SLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREY-RLLSDIAASM-DEEDIAKFTDVVKEFDS 259 (289)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~-~~l~~l~~a~-~~~d~~~~~~al~~~~~ 259 (289)
.... ...+...+......|+...|+..|++++...+. .... .+....+.-- ..|+.+......+.+..
T Consensus 500 ~p~~-------~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~---~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~ 569 (679)
T 4e6h_A 500 FATD-------GEYINKYLDFLIYVNEESQVKSLFESSIDKISD---SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE 569 (679)
T ss_dssp HTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS---TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred CCCc-------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4322 122333333344578999999999999875542 1122 2222222211 36777666666655555
Q ss_pred cCCCc
Q 022992 260 MTPLD 264 (289)
Q Consensus 260 ~~~~d 264 (289)
..+-+
T Consensus 570 ~~P~~ 574 (679)
T 4e6h_A 570 KFPEV 574 (679)
T ss_dssp HSTTC
T ss_pred hCCCC
Confidence 54443
No 206
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.94 E-value=0.00033 Score=60.02 Aligned_cols=178 Identities=9% Similarity=0.089 Sum_probs=111.5
Q ss_pred HHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHH
Q 022992 76 YVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQC 154 (289)
Q Consensus 76 ~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~ 154 (289)
+..+|.++... ++++|+.++.+.+.. +.......+...++.++...|+++.|.+.+++..+..+.. ....-.+
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~i~~----~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~--~~~~d~~ 176 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEGIDN----DEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDT--VSGDNEM 176 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTS----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHH--HHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcc----CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc--cccchHH
Confidence 35678888665 999999999987432 2113455678888999999999999999999987764410 0001134
Q ss_pred HHHHHHH--HHHhc--CHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCC--
Q 022992 155 KQKVAQY--AAELE--QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSG-- 228 (289)
Q Consensus 155 ~~~l~~~--~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~-- 228 (289)
+..++.. ....| ++.+|..+|+++.... + .+.....+++ +++.+|++++|...++...+..|.+..
T Consensus 177 l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~---p--~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~ 248 (310)
T 3mv2_B 177 ILNLAESYIKFATNKETATSNFYYYEELSQTF---P--TWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKE 248 (310)
T ss_dssp HHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS---C--SHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC---C--CcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccc
Confidence 5566544 55556 9999999999975321 1 1111223333 888999999999999977666544311
Q ss_pred ---chHHHHHHHHHH-HHcccCHHHHHHHHHhccccCCCchhHHH
Q 022992 229 ---TREYRLLSDIAA-SMDEEDIAKFTDVVKEFDSMTPLDPWKTT 269 (289)
Q Consensus 229 ---~~e~~~l~~l~~-a~~~~d~~~~~~al~~~~~~~~~d~~~~~ 269 (289)
.....++.+++. .+..|+ ...+.+.....+.+-.||-..
T Consensus 249 ~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 249 NAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp HHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 223455645543 333555 233444444555555555543
No 207
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.93 E-value=0.00037 Score=60.41 Aligned_cols=212 Identities=8% Similarity=0.034 Sum_probs=133.2
Q ss_pred HHcCCHH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-----------CHHHHHHHHHHHHHHHHhcCCHHHH
Q 022992 44 KLAKSWD-KAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-----------SSNEAISCLEQAVNMFCDIGRLSMA 111 (289)
Q Consensus 44 ~~~g~~~-~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-----------~~~~A~~~~~~A~~~~~~~g~~~~~ 111 (289)
+..|.++ +|+.++.+++.+..+. -.+..+ -+.+.... .+++++.++..++...+++-.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~----ytaWn~--Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~---- 109 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDF----ATLWNC--RREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG---- 109 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTC----HHHHHH--HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH----
T ss_pred HHcCCCCHHHHHHHHHHHHHCchh----HHHHHH--HHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHH----
Confidence 3456665 7788888888764321 112222 22222211 267889999999888776654
Q ss_pred HHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHhhcccc
Q 022992 112 ARYYKEIAELYESEHN--IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQ-YHKSIEIYEEIARQSLNNNLL 188 (289)
Q Consensus 112 a~~l~~la~~~~~~g~--~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~ 188 (289)
+|..-+.++...++ +++++.++.+++++.+.+. .++..-+.+....|. ++++++++.+++...+.+
T Consensus 110 --aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy------~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N--- 178 (331)
T 3dss_A 110 --TWHHRCWLLSRLPEPNWARELELCARFLEADERNF------HCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN--- 178 (331)
T ss_dssp --HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCC---
T ss_pred --HHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCC---
Confidence 88888899988884 8999999999999877653 578888888889998 699999999998553322
Q ss_pred ccchhhHHHHHHHHHHcc--------------CCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-ccc-----CHH
Q 022992 189 KYGVKGHLLNAGICQLCK--------------GDVVAITNALERYQDMDPTFSGTREYRLLSDIAASM-DEE-----DIA 248 (289)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~--------------gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~-~~~-----d~~ 248 (289)
+ .++...+.+.... +.+.++.+.+..++.++|.....- ..+..++... ... +.+
T Consensus 179 -~---SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW--~Y~r~ll~~~~~~~~~~~~~~~ 252 (331)
T 3dss_A 179 -Y---SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAW--FYHRWLLGAGSGRCELSVEKST 252 (331)
T ss_dssp -H---HHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHH--HHHHHHHHSSSCGGGCCHHHHH
T ss_pred -H---HHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHhccCccccchHHHH
Confidence 2 2333333332222 346788999999998887753221 1244444322 111 135
Q ss_pred HHHHHHHhccccCCCch---hHHHHHHHHHHhccccc
Q 022992 249 KFTDVVKEFDSMTPLDP---WKTTLLLRVKEKLKAKE 282 (289)
Q Consensus 249 ~~~~al~~~~~~~~~d~---~~~~~~~~~~~~~~~~~ 282 (289)
.++++++.+..+-.++| |+-..+..+...+.+.+
T Consensus 253 ~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~ 289 (331)
T 3dss_A 253 VLQSELESCKELQELEPENKWCLLTIILLMRALDPLL 289 (331)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccc
Confidence 67777777777766555 44333344444444333
No 208
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.91 E-value=0.00062 Score=52.34 Aligned_cols=103 Identities=12% Similarity=0.007 Sum_probs=81.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCcc----
Q 022992 76 YVDAAHCYKKTSSNEAISCLEQAVNMFCDIGR---LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT---- 148 (289)
Q Consensus 76 ~~~~a~~~~~~~~~~A~~~~~~A~~~~~~~g~---~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~---- 148 (289)
+.++-.++....++.|+.....++.+.....+ +...+.++..+|..+...++|..|...|++|+.+.+.....
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~ 103 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR 103 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 34444555555889999999998888765544 78889999999999999999999999999999887643211
Q ss_pred ---------------chHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 022992 149 ---------------TSANQCKQKVAQYAAELEQYHKSIEIYEEI 178 (289)
Q Consensus 149 ---------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 178 (289)
....++..+++.|+.++|++++|+..++.+
T Consensus 104 ~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 104 PSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp -------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred ccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 223478899999999999999999998876
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.90 E-value=6.8e-05 Score=52.12 Aligned_cols=88 Identities=11% Similarity=0.055 Sum_probs=65.1
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhh-HHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHH
Q 022992 156 QKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKG-HLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRL 234 (289)
Q Consensus 156 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~ 234 (289)
.+.|.++...|++++|+..|++++..... ... .++.+|.++...|++.+|...|++++.+.|..... ..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~ 73 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPV-------GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL---QA 73 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSS-------THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH---HH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC-------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH---HH
Confidence 56788999999999999999999854321 223 67888999999999999999999999988875421 11
Q ss_pred HHHHHHHHcccCHHHHHHHHHhccccCCCch
Q 022992 235 LSDIAASMDEEDIAKFTDVVKEFDSMTPLDP 265 (289)
Q Consensus 235 l~~l~~a~~~~d~~~~~~al~~~~~~~~~d~ 265 (289)
. ..+.+++..|+.+...+|
T Consensus 74 ~------------~~~~~a~~~~~~~~~~~p 92 (99)
T 2kc7_A 74 R------------KMVMDILNFYNKDMYNQL 92 (99)
T ss_dssp H------------HHHHHHHHHHCCTTHHHH
T ss_pred H------------HHHHHHHHHHHHHhccCc
Confidence 0 345556666666655544
No 210
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.90 E-value=0.0027 Score=57.34 Aligned_cols=204 Identities=10% Similarity=0.050 Sum_probs=110.7
Q ss_pred HHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccCC
Q 022992 8 AEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTS 87 (289)
Q Consensus 8 a~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~~ 87 (289)
..+.+.+|+++.+ +++.+|++.+-..-.--+..++...........+.+....+++.........+. .+++.
T Consensus 17 ~~~~~~~~~~l~~------~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls--kkr~q 88 (445)
T 4b4t_P 17 LKEEFPKIDSLAQ------NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLS--KKHGQ 88 (445)
T ss_dssp -----------CH------HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH--TTTTT
T ss_pred HHHHHHHHHHHHc------CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHhhh
Confidence 4456666666544 477777776654444444445555555556666666666666654333222211 12223
Q ss_pred HHHHHHHH-HHHHHHHHhc--------------------CCH---HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 022992 88 SNEAISCL-EQAVNMFCDI--------------------GRL---SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ 143 (289)
Q Consensus 88 ~~~A~~~~-~~A~~~~~~~--------------------g~~---~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~ 143 (289)
...|+... +.++...... |.. ..-+++...++.++...|++.+|...++....-..
T Consensus 89 lk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~ 168 (445)
T 4b4t_P 89 LKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETY 168 (445)
T ss_dssp SHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 33333322 2222222111 111 23577888999999999999999999988753333
Q ss_pred ccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHH
Q 022992 144 NEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY 219 (289)
Q Consensus 144 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~ 219 (289)
...+.....+++.....++...++|..|..++.++............--..++...|..+...+++..|-.+|...
T Consensus 169 ~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 169 GSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3334455667888889999999999999999999853322221111011123334466666677776665555443
No 211
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.87 E-value=0.00018 Score=67.22 Aligned_cols=176 Identities=7% Similarity=-0.005 Sum_probs=127.9
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHHHhccCccchHHHHHH
Q 022992 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHN----------IEQTIVFFEKAADMFQNEEVTTSANQCKQ 156 (289)
Q Consensus 87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~----------~~~A~~~y~~A~~~~~~~~~~~~~~~~~~ 156 (289)
..++|++++.+++.+.++.-. +|..-+.++...|+ +++++.++.++++..++.- .++.
T Consensus 44 ~~eeal~~~~~~l~~nP~~~t------aW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y------~aW~ 111 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFAT------LWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY------GTWH 111 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH------HHHH
T ss_pred CCHHHHHHHHHHHHHCchhHH------HHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCH------HHHH
Confidence 457899999999998776554 78888888888877 9999999999999877643 5788
Q ss_pred HHHHHHHHhc--CHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccC-CHHHHHHHHHHHhhcCCCCCCchHHH
Q 022992 157 KVAQYAAELE--QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKG-DVVAITNALERYQDMDPTFSGTREYR 233 (289)
Q Consensus 157 ~l~~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-d~~~A~~~~~~~~~~~~~~~~~~e~~ 233 (289)
.-+.++..+| +++++++++.+++.....+ ..+|...+.+....| .++++.+.+.++++.+++...+- .
T Consensus 112 hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N-------~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW--~ 182 (567)
T 1dce_A 112 HRCWLLSRLPEPNWARELELCARFLEADERN-------FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSW--H 182 (567)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHH--H
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHhhcccc-------ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHH--H
Confidence 8999999999 7799999999998654222 234555666656677 78888999888887776643221 1
Q ss_pred HHHHHHHHH-cc--------cCHHHHHHHHHhccccCCCchhHHHHHHHHHHhcccccc
Q 022992 234 LLSDIAASM-DE--------EDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKEL 283 (289)
Q Consensus 234 ~l~~l~~a~-~~--------~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 283 (289)
....++... .. -+.+.++++++.+.....++|.+...|.-.+-.+...+-
T Consensus 183 ~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 183 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred HHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence 112222222 11 124778888888888888888888888887777765443
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.84 E-value=0.0002 Score=62.62 Aligned_cols=142 Identities=10% Similarity=0.030 Sum_probs=96.8
Q ss_pred CCHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-----CHHHHHHHHHHHH
Q 022992 27 SKYEDAADLFDKAANSFKL--AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-----SSNEAISCLEQAV 99 (289)
Q Consensus 27 ~~~~~A~~~~~~A~~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-----~~~~A~~~~~~A~ 99 (289)
|.-..|.++|-++-..+.. ..++.+|+.+|++|+++-... +.++..++.+|... .....+.-..+++
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~------a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~ 264 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEF------TYARAEKALVDIVRHSQHPLDEKQLAALNTEI 264 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Confidence 5557889999988665543 334689999999999985433 22333334443211 1122333334444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992 100 NMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (289)
Q Consensus 100 ~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 179 (289)
............+.++.-++..+...|++++|+.++++|+.+-+ . ...+..+|.++...|++++|++.|++++
T Consensus 265 ~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~------s-~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 265 DNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM------S-WLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp HHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC------C-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC------C-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 43333333345677888888887767999999999999999841 1 2467889999999999999999999998
Q ss_pred HH
Q 022992 180 RQ 181 (289)
Q Consensus 180 ~~ 181 (289)
..
T Consensus 338 rL 339 (372)
T 3ly7_A 338 NL 339 (372)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 213
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.78 E-value=0.00038 Score=60.70 Aligned_cols=174 Identities=7% Similarity=-0.015 Sum_probs=126.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHH
Q 022992 25 FGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT--SSNEAISCLEQAVNMF 102 (289)
Q Consensus 25 ~~~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~--~~~~A~~~~~~A~~~~ 102 (289)
++++|..+...+.. +....+..++|+.++.+++.+..+. ..+++.-+.+.... ++++++.++.+++...
T Consensus 49 y~~~y~~~~~~~r~---~~~~~e~se~AL~lt~~~L~~nP~~------ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n 119 (349)
T 3q7a_A 49 YSEEYKDAMDYFRA---IAAKEEKSERALELTEIIVRMNPAH------YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN 119 (349)
T ss_dssp CCHHHHHHHHHHHH---HHHTTCCSHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred eCHHHHHHHHHHHH---HHHhCCCCHHHHHHHHHHHHhCchh------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 35677777765544 3444556688999999999885432 23444455555444 6999999999999888
Q ss_pred HhcCCHHHHHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHH--------HHH
Q 022992 103 CDIGRLSMAARYYKEIAELYESE-H-NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYH--------KSI 172 (289)
Q Consensus 103 ~~~g~~~~~a~~l~~la~~~~~~-g-~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~ 172 (289)
+++-. ++..-+.++... + ++++++.++.++++..+++- .++..-+.+...+|.++ +++
T Consensus 120 PKny~------aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy------~AW~~R~wvl~~l~~~~~~~~~~~~eEL 187 (349)
T 3q7a_A 120 LKSYQ------VWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNY------HTWAYLHWLYSHFSTLGRISEAQWGSEL 187 (349)
T ss_dssp CCCHH------HHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCH------HHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred CCcHH------HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhccccccchhhHHHHH
Confidence 77655 888888888887 7 89999999999998766542 57788888888888887 999
Q ss_pred HHHHHHHHHHhhccccccchhhHHHHHHHHHHccCC-------HHHHHHHHHHHhhcCCCC
Q 022992 173 EIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGD-------VVAITNALERYQDMDPTF 226 (289)
Q Consensus 173 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd-------~~~A~~~~~~~~~~~~~~ 226 (289)
+++.+++.....+ ..++...+.+....+. +.++.+.+.+++.++|..
T Consensus 188 e~~~k~I~~dp~N-------~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n 241 (349)
T 3q7a_A 188 DWCNEMLRVDGRN-------NSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHN 241 (349)
T ss_dssp HHHHHHHHHCTTC-------HHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHhCCCC-------HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCC
Confidence 9999998553322 2345555555555554 577888888888877764
No 214
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.68 E-value=0.00041 Score=49.20 Aligned_cols=74 Identities=14% Similarity=0.062 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992 154 CKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS 227 (289)
Q Consensus 154 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~ 227 (289)
-...+|.++...|+|..|+..|+.++......+.........+..+|.|+..+|++..|...+++++.+.|...
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~ 80 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ 80 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence 45689999999999999999999998554322211123345677889999999999999999999999888763
No 215
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.63 E-value=0.0021 Score=61.22 Aligned_cols=184 Identities=9% Similarity=0.060 Sum_probs=124.7
Q ss_pred CCHHHHH-HHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHh--------cC-C-------HHHHHHH
Q 022992 27 SKYEDAA-DLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLK--------LE-S-------KHEAAQA 75 (289)
Q Consensus 27 ~~~~~A~-~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~--------~~-~-------~~~aa~~ 75 (289)
++.++|. +.|.+| +.+....|+++.|...|++++..... .. . .......
T Consensus 357 ~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~v 436 (679)
T 4e6h_A 357 NTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYV 436 (679)
T ss_dssp SCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHH
Confidence 5556675 777666 34455789999999999999987531 10 0 0123345
Q ss_pred HHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhccCccchHHH
Q 022992 76 YVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE-HNIEQTIVFFEKAADMFQNEEVTTSANQ 153 (289)
Q Consensus 76 ~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~-g~~~~A~~~y~~A~~~~~~~~~~~~~~~ 153 (289)
+...+.+.++. +.+.|...|.+|+...+... ..++...|.+-... ++++.|...|+++++.++... .
T Consensus 437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~-----~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~------~ 505 (679)
T 4e6h_A 437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT-----PDIYLENAYIEYHISKDTKTACKVLELGLKYFATDG------E 505 (679)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC-----THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCH------H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCch------H
Confidence 66666666555 89999999999987622221 23566666665554 459999999999999987542 3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992 154 CKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT 225 (289)
Q Consensus 154 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~ 225 (289)
.+...+.+....|+.+.|..+|++++..... .......+.....--...|+...+.+..+++.+..|.
T Consensus 506 ~w~~y~~fe~~~~~~~~AR~lferal~~~~~----~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 506 YINKYLDFLIYVNEESQVKSLFESSIDKISD----SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS----TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 5667888888899999999999999743211 0011222222222334569999999999999887765
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.46 E-value=0.0029 Score=55.36 Aligned_cols=126 Identities=14% Similarity=-0.055 Sum_probs=82.8
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHH
Q 022992 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYE----SEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYA 162 (289)
Q Consensus 87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~----~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~ 162 (289)
++.+|+.+|++|+++.+.... ++..++.++. ........+.-..+++............+.++.-++.++
T Consensus 214 ~~~~A~~l~e~Al~lDP~~a~------A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~ 287 (372)
T 3ly7_A 214 SLNRASELLGEIVQSSPEFTY------ARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSA 287 (372)
T ss_dssp HHHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHH
Confidence 678999999999999775433 3333333332 111222233333444443222222233456778888888
Q ss_pred HHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC
Q 022992 163 AELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTF 226 (289)
Q Consensus 163 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~ 226 (289)
...|++++|+..+++++... + . ...+...|.++...|+.++|.+.|+++..+.|..
T Consensus 288 l~~gd~d~A~~~l~rAl~Ln--~-----s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 288 LVKGKTDESYQAINTGIDLE--M-----S-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--C-----C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred HhCCCHHHHHHHHHHHHhcC--C-----C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 88899999999999998542 1 1 2234556888888999999999999999988764
No 217
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.44 E-value=0.00055 Score=59.66 Aligned_cols=180 Identities=12% Similarity=-0.025 Sum_probs=120.4
Q ss_pred HHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhccCccchHHHHHHHHH
Q 022992 82 CYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH-NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVA 159 (289)
Q Consensus 82 ~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g-~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~ 159 (289)
+.... ..++|++++.+++.+.++.-. +++.-+.++...| ++++++.++.+++...++.. .+++.-+
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~nP~~yt------aWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny------~aW~hR~ 130 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMNPAHYT------VWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSY------QVWHHRL 130 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCH------HHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHhCchhHH------HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcH------HHHHHHH
Confidence 33334 557899999999999876654 8888899999888 59999999999998877643 5788888
Q ss_pred HHHHHh-c-CHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHH--------HHHHHHHHHhhcCCCCCCc
Q 022992 160 QYAAEL-E-QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVV--------AITNALERYQDMDPTFSGT 229 (289)
Q Consensus 160 ~~~~~~-g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~--------~A~~~~~~~~~~~~~~~~~ 229 (289)
.++..+ + +++++++++.+++..... .+ .++...+.+....|.+. ++.+.+++.++.+++...+
T Consensus 131 wlL~~l~~~~~~~EL~~~~k~L~~dpk----Ny---~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SA 203 (349)
T 3q7a_A 131 LLLDRISPQDPVSEIEYIHGSLLPDPK----NY---HTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSA 203 (349)
T ss_dssp HHHHHHCCSCCHHHHHHHHHHTSSCTT----CH---HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCCC----CH---HHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHH
Confidence 888887 7 999999999998733211 11 23333333322233333 7888888888887764322
Q ss_pred hHHHHHHHHHHHHc--ccCHHHHHHHHHhccccCCCchhHHHHHHHHHHhccccc
Q 022992 230 REYRLLSDIAASMD--EEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKE 282 (289)
Q Consensus 230 ~e~~~l~~l~~a~~--~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 282 (289)
--. ...++.... .++.+.+.+++..+.....++|.+...+.-++-.|...+
T Consensus 204 W~~--R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 204 WGW--RWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp HHH--HHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHH--HHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 111 111111111 134566788888888877788888887766655554433
No 218
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.43 E-value=0.0014 Score=55.37 Aligned_cols=86 Identities=13% Similarity=0.167 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHH
Q 022992 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE-----HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQY 161 (289)
Q Consensus 87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~-----g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~ 161 (289)
....|...+++|+++-+. ...+.++..+|.+|... |+.++|..+|++|+++.+... ..++.-.|..
T Consensus 178 ~l~~A~a~lerAleLDP~----~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~-----id~~v~YA~~ 248 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPS----YQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHD-----PDHHITYADA 248 (301)
T ss_dssp HHHHHHHHHHHHHHHCTT----HHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTC-----SHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCC----cccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCC-----chHHHHHHHH
Confidence 467899999999999764 12345899999999985 999999999999999977431 2467888998
Q ss_pred HHH-hcCHHHHHHHHHHHHHH
Q 022992 162 AAE-LEQYHKSIEIYEEIARQ 181 (289)
Q Consensus 162 ~~~-~g~~~~A~~~~~~a~~~ 181 (289)
++. .|++++|.+++++++..
T Consensus 249 l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 249 LCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp TTTTTTCHHHHHHHHHHHHHC
T ss_pred HHHhcCCHHHHHHHHHHHHcC
Confidence 887 59999999999999854
No 219
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.39 E-value=0.038 Score=48.86 Aligned_cols=149 Identities=9% Similarity=-0.005 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCH
Q 022992 31 DAADLFDKAANSFKL-AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL 108 (289)
Q Consensus 31 ~A~~~~~~A~~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~ 108 (289)
.++......-..+.. -+..+.-++....+++..++.+...---..-.++|.+|... ++.+|...+.+...-....++.
T Consensus 56 k~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~ 135 (394)
T 3txn_A 56 KAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDK 135 (394)
T ss_dssp HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCT
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccc
Confidence 334434333333322 35567778888888888887766654444555788888766 9999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-CccchHHHHHHHHHHHHH-HhcCHHHHHHHHHHHH
Q 022992 109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE-EVTTSANQCKQKVAQYAA-ELEQYHKSIEIYEEIA 179 (289)
Q Consensus 109 ~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~-~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~ 179 (289)
...-.++..-..+|...+++.++-..|.+|..+.... .++...+.+...-|.++. ..++|.+|..+|-++.
T Consensus 136 ~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 136 NLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 8888888888999999999999999999999887654 556667777788888899 8999999999998875
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.38 E-value=0.0027 Score=48.30 Aligned_cols=99 Identities=8% Similarity=0.060 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHH
Q 022992 128 IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE---QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQL 204 (289)
Q Consensus 128 ~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 204 (289)
...+.+.|.+++.. +. ...++.+++|.++++.+ ++++++.+++++.... .| ....++++++++.+.
T Consensus 14 l~~~~~~y~~e~~~----~~--~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p---~~~rd~lY~LAv~~~ 82 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA----GS--VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SK---EEQRDYVFYLAVGNY 82 (152)
T ss_dssp HHHHHHHHHHHHHT----TC--CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcc----CC--CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--Cc---cchHHHHHHHHHHHH
Confidence 34455566655432 22 23367899999999887 7779999999987532 01 123467788888899
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHH
Q 022992 205 CKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAA 240 (289)
Q Consensus 205 ~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~ 240 (289)
..||+..|+++++..+++.|.+ .++..+..++.
T Consensus 83 kl~~Y~~A~~y~~~lL~ieP~n---~QA~~Lk~~ie 115 (152)
T 1pc2_A 83 RLKEYEKALKYVRGLLQTEPQN---NQAKELERLID 115 (152)
T ss_dssp HTSCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHH
Confidence 9999999999999999988864 34444544443
No 221
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.37 E-value=0.0055 Score=47.04 Aligned_cols=98 Identities=8% Similarity=-0.054 Sum_probs=72.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHhccC---ccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh---ccc------
Q 022992 120 ELYESEHNIEQTIVFFEKAADMFQNEE---VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN---NNL------ 187 (289)
Q Consensus 120 ~~~~~~g~~~~A~~~y~~A~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~---~~~------ 187 (289)
..+...|.|+.|+-....++.+..... .+....+++..+|+.+...++|..|...|++++....- .+.
T Consensus 28 k~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~ 107 (167)
T 3ffl_A 28 RDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTG 107 (167)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----------
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccccc
Confidence 333444999999999999998876543 35677889999999999999999999999999733210 100
Q ss_pred ---------cccchhhHHHHHHHHHHccCCHHHHHHHHH
Q 022992 188 ---------LKYGVKGHLLNAGICQLCKGDVVAITNALE 217 (289)
Q Consensus 188 ---------~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~ 217 (289)
......+.-++++.||...++...|...++
T Consensus 108 ~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le 146 (167)
T 3ffl_A 108 NSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILD 146 (167)
T ss_dssp ---------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence 001122566889999999999998887754
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.25 E-value=0.0014 Score=45.50 Aligned_cols=63 Identities=13% Similarity=0.108 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992 112 ARYYKEIAELYESEHN---IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180 (289)
Q Consensus 112 a~~l~~la~~~~~~g~---~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 180 (289)
+..+..+|.++...++ .++|..++++|+.+.+... .++..+|.++...|+|++|+.+|++++.
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~------rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNE------AALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3566777777754444 7999999999999876542 5788899999999999999999999974
No 223
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.00056 Score=62.24 Aligned_cols=221 Identities=13% Similarity=0.082 Sum_probs=110.6
Q ss_pred cCCHHHHHHHHHHHH--HHHHhcCC---HHHHHHHHHHHHHHHccC-CHHH----------HHHHHHHHHHHHHhcCCHH
Q 022992 46 AKSWDKAGATYVKLA--NCHLKLES---KHEAAQAYVDAAHCYKKT-SSNE----------AISCLEQAVNMFCDIGRLS 109 (289)
Q Consensus 46 ~g~~~~A~~~~~~a~--~~~~~~~~---~~~aa~~~~~~a~~~~~~-~~~~----------A~~~~~~A~~~~~~~g~~~ 109 (289)
.++++++.++-.... +.....+. ..-+|+.|.-.+.++... .... -...+..++....-..|..
T Consensus 149 ~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~ 228 (523)
T 4b4t_S 149 SKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNE 228 (523)
T ss_dssp ------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSSSC
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcc
Confidence 456777777665554 22222221 122455555545555433 2221 1222333333333345667
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-CccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccc
Q 022992 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE-EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLL 188 (289)
Q Consensus 110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 188 (289)
+.+-+++.+=..|...+.|++|..+..++. |+.. .+.......+.-+|.++.-.++|.+|.+++..+...+..+..
T Consensus 229 ~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~- 305 (523)
T 4b4t_S 229 TKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK- 305 (523)
T ss_dssp HHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS-
T ss_pred hhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh-
Confidence 888999999999999999999999999985 5543 233445677888999999999999999999998744332211
Q ss_pred ccchh-hHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccCHHHHHHHHHhccccCCCchhH
Q 022992 189 KYGVK-GHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWK 267 (289)
Q Consensus 189 ~~~~~-~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d~~~~~~al~~~~~~~~~d~~~ 267 (289)
..+.. ..+-.+..|.+.+|+.+. +..|.. +.-.....-...|..++..||+..|..++..+...=.-| -+
T Consensus 306 a~gfr~~a~K~lI~V~LLlG~iP~-r~lf~q-------~~l~~~L~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~D-gt 376 (523)
T 4b4t_S 306 SLGFLQQSNKLHCCIQLLMGDIPE-LSFFHQ-------SNMQKSLLPYYHLTKAVKLGDLKKFTSTITKYKQLLLKD-DT 376 (523)
T ss_dssp CSHHHHHHHHHHHHHHHHHTCCCC-HHHHTT-------TSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHT-TC
T ss_pred hhhHHHHHHHHHHhHHhhcCCCCC-hHHhhc-------hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcceeccC-Ch
Confidence 11111 122234566667788654 233321 111111122345788999999999999999876653223 22
Q ss_pred HHHHHHHHHhc
Q 022992 268 TTLLLRVKEKL 278 (289)
Q Consensus 268 ~~~~~~~~~~~ 278 (289)
-.++.|++.++
T Consensus 377 y~LI~rLr~~v 387 (523)
T 4b4t_S 377 YQLCVRLRSNV 387 (523)
T ss_dssp THHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 25666665554
No 224
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.05 E-value=0.029 Score=51.32 Aligned_cols=167 Identities=9% Similarity=0.021 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC----------CHHHHHHHHHHHHHHHHh
Q 022992 35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT----------SSNEAISCLEQAVNMFCD 104 (289)
Q Consensus 35 ~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~----------~~~~A~~~~~~A~~~~~~ 104 (289)
.+...-..|.+.|++++|...|.++.+.--.. -..+|+.+-.++... ++++|.+.|++-..
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~p-----d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~---- 98 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQL-----SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV---- 98 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCC-----CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-----CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHH----
Confidence 35566778889999999999999887542111 133566666666432 24566666554322
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Q 022992 105 IGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN 184 (289)
Q Consensus 105 ~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 184 (289)
.|-. --..+++.+-..+...|++++|.+.|++..+ .|-.+.. .+++.+-..+.+.|++++|.++|++.......
T Consensus 99 ~G~~-Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~----~g~~Pd~-~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~ 172 (501)
T 4g26_A 99 DKVV-PNEATFTNGARLAVAKDDPEMAFDMVKQMKA----FGIQPRL-RSYGPALFGFCRKGDADKAYEVDAHMVESEVV 172 (501)
T ss_dssp TTCC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----TTCCCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred hCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCcc-ceehHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 2211 1134677777888888999999999987654 2322222 46888889999999999999999998643222
Q ss_pred ccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhc
Q 022992 185 NNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDM 222 (289)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~ 222 (289)
. ....|..+..++...|+.++|.+.|++..+.
T Consensus 173 P------d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 173 P------EEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp C------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C------CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 1 1123444556677889999999999987653
No 225
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.97 E-value=0.098 Score=44.07 Aligned_cols=90 Identities=14% Similarity=0.266 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHH
Q 022992 127 NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL-----EQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGI 201 (289)
Q Consensus 127 ~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 201 (289)
....|...+++|+++.+.. ....++..+|.+|... |+.++|.++|++++....+.. ...++..+.
T Consensus 178 ~l~~A~a~lerAleLDP~~----~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~------id~~v~YA~ 247 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSY----QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHD------PDHHITYAD 247 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTH----HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTC------SHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCc----ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCC------chHHHHHHH
Confidence 3689999999999997752 1235889999999985 999999999999986643211 111222333
Q ss_pred HHHc-cCCHHHHHHHHHHHhhcCCCC
Q 022992 202 CQLC-KGDVVAITNALERYQDMDPTF 226 (289)
Q Consensus 202 ~~l~-~gd~~~A~~~~~~~~~~~~~~ 226 (289)
.+.. .||...|...+++++...++.
T Consensus 248 ~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 248 ALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 3333 599999999999999988775
No 226
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.84 E-value=0.012 Score=52.85 Aligned_cols=184 Identities=13% Similarity=0.109 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccch
Q 022992 72 AAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTS 150 (289)
Q Consensus 72 aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~ 150 (289)
...++..+|..|.+. ++++|.++|.++.+.....+. ....+..+-.++...+++..+..++.+|-.+....+++..
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~---kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~ 206 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA---KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWER 206 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH---HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHH
Confidence 345667788888665 999999999998876655554 2334444444444559999999999999999888877766
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHH------HHHHHhhcCC
Q 022992 151 ANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITN------ALERYQDMDP 224 (289)
Q Consensus 151 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~------~~~~~~~~~~ 224 (289)
.+......|.++...++|.+|...|-++.......... .........++|.+...+...-.. .+..+++
T Consensus 207 ~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e~~--~~~~~~~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~--- 281 (429)
T 4b4t_R 207 RNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSIELT--SYESIATYASVTGLFTLERTDLKSKVIDSPELLSLIS--- 281 (429)
T ss_dssp HHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCCSCHH--HHHHHHHHHHHHHHHTTCHHHHHHSSSSSHHHHHGGG---
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCccchh--hHHHHHHHHHHHHHhcCCHHHHHHHHhcCHHHHhhcc---
Confidence 66666677778888999999999998886433221111 111222233455554444332111 1111111
Q ss_pred CCCCchHHHHHHHHHHHHcccCH-HHHHHHHHhccccCCCchh
Q 022992 225 TFSGTREYRLLSDIAASMDEEDI-AKFTDVVKEFDSMTPLDPW 266 (289)
Q Consensus 225 ~~~~~~e~~~l~~l~~a~~~~d~-~~~~~al~~~~~~~~~d~~ 266 (289)
..++...+..++.++..++. ..+...+..++..-..|+.
T Consensus 282 ---~~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~ 321 (429)
T 4b4t_R 282 ---TTAALQSISSLTISLYASDYASYFPYLLETYANVLIPCKY 321 (429)
T ss_dssp ---SHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTTCTT
T ss_pred ---CChhHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhccCHH
Confidence 12334445566666655554 4455556666665555543
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.80 E-value=0.0051 Score=42.62 Aligned_cols=65 Identities=15% Similarity=-0.033 Sum_probs=52.4
Q ss_pred HHHHHHHHHHc-cC---CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992 74 QAYVDAAHCYK-KT---SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (289)
Q Consensus 74 ~~~~~~a~~~~-~~---~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~ 144 (289)
..+...|.++. .. ..++|..++++|+.+.+.+. +++..+|..+...|+|++|+.+|+++++..+.
T Consensus 7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~------rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNE------AALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 34455555553 22 47999999999999987654 48999999999999999999999999987665
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.78 E-value=0.014 Score=44.34 Aligned_cols=71 Identities=15% Similarity=0.105 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhc
Q 022992 111 AARYYKEIAELYESEH---NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (289)
Q Consensus 111 ~a~~l~~la~~~~~~g---~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 185 (289)
...+..++|.++...+ +.++++.+++..++.. .+....+++..+|..+.++|+|++|.+++++++...+++
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~----~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 104 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 4567888888888876 5669999999988753 233456899999999999999999999999998665443
No 229
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.64 E-value=0.2 Score=45.81 Aligned_cols=166 Identities=10% Similarity=0.046 Sum_probs=104.2
Q ss_pred HHHHHHHcc-CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHHHhccC
Q 022992 77 VDAAHCYKK-TSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE---------HNIEQTIVFFEKAADMFQNEE 146 (289)
Q Consensus 77 ~~~a~~~~~-~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~---------g~~~~A~~~y~~A~~~~~~~~ 146 (289)
..+-..+-+ +++++|++.|++..+.-... + ..+++.+=..+... ++.+.|.+.|.+-.. .|
T Consensus 30 ~~~id~c~k~G~~~~A~~lf~~M~~~Gv~p-d----~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~----~G 100 (501)
T 4g26_A 30 KQKLDMCSKKGDVLEALRLYDEARRNGVQL-S----QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV----DK 100 (501)
T ss_dssp HHHHHHTTTSCCHHHHHHHHHHHHHHTCCC-C----HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHH----TT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-C----HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHH----hC
Confidence 333444434 48888888888775431111 1 12333333333332 335677777766433 23
Q ss_pred ccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC
Q 022992 147 VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTF 226 (289)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~ 226 (289)
-.+.. .+++.+...+.+.|++++|.++|++........ ....|..+...+...|+.+.|.+.|++..+. ++
T Consensus 101 ~~Pd~-~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P------d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~--G~ 171 (501)
T 4g26_A 101 VVPNE-ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP------RLRSYGPALFGFCRKGDADKAYEVDAHMVES--EV 171 (501)
T ss_dssp CCCCH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TC
T ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------ccceehHHHHHHHHCCCHHHHHHHHHHHHhc--CC
Confidence 33333 478899999999999999999999986432211 1123444555677889999999999987652 22
Q ss_pred CCchHHHHHHHHHHHHc-ccCHHHHHHHHHhccccCC
Q 022992 227 SGTREYRLLSDIAASMD-EEDIAKFTDVVKEFDSMTP 262 (289)
Q Consensus 227 ~~~~e~~~l~~l~~a~~-~~d~~~~~~al~~~~~~~~ 262 (289)
. +.......|+.++. .|+.+...+.+..++..+.
T Consensus 172 ~--Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~ 206 (501)
T 4g26_A 172 V--PEEPELAALLKVSMDTKNADKVYKTLQRLRDLVR 206 (501)
T ss_dssp C--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred C--CCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCC
Confidence 2 23345677888774 8999888888888776543
No 230
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.61 E-value=0.1 Score=49.96 Aligned_cols=25 Identities=12% Similarity=0.084 Sum_probs=16.4
Q ss_pred HHHHHHHHHHccC-CHHHHHHHHHHH
Q 022992 74 QAYVDAAHCYKKT-SSNEAISCLEQA 98 (289)
Q Consensus 74 ~~~~~~a~~~~~~-~~~~A~~~~~~A 98 (289)
..+.++|..+.+. +++.|..+|.++
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3556677766555 777777776654
No 231
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.2 Score=44.96 Aligned_cols=126 Identities=10% Similarity=0.018 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHH-HHHhcCCHH
Q 022992 32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVN-MFCDIGRLS 109 (289)
Q Consensus 32 A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~-~~~~~g~~~ 109 (289)
-+.+-...+.+|...|++.+|.........=.....+...-...+.....+|... ++.+|...+.++.. .+.....+.
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~ 215 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES 215 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence 3556677889999999999999998877533333445556666666666666555 99999999999875 445556778
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHH
Q 022992 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQK 157 (289)
Q Consensus 110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~ 157 (289)
..+..+.-.|.++...++|.+|..+|..+.+.+...+++.....++..
T Consensus 216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~ 263 (445)
T 4b4t_P 216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSH 263 (445)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHH
Confidence 889999999999999999999999999999987766655443333333
No 232
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.77 E-value=0.18 Score=45.07 Aligned_cols=105 Identities=14% Similarity=0.041 Sum_probs=84.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022992 39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCY-KKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKE 117 (289)
Q Consensus 39 A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~-~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~ 117 (289)
.|..|...|++++|.++|.++.+.....+.. ...+.....++ ...++..+..++.+|..+....+++...++...-
T Consensus 137 la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~k---id~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~ 213 (429)
T 4b4t_R 137 LGEYYAQIGDKDNAEKTLGKSLSKAISTGAK---IDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTY 213 (429)
T ss_dssp HHHHHHHHCCCTTHHHHHHHHHHHHTCCCSH---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCChHHH---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHH
Confidence 4677888999999999999988766555543 33444444444 3449999999999999999999999999888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q 022992 118 IAELYESEHNIEQTIVFFEKAADMFQNEE 146 (289)
Q Consensus 118 la~~~~~~g~~~~A~~~y~~A~~~~~~~~ 146 (289)
.|.++...++|..|..+|..+...+...+
T Consensus 214 ~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e 242 (429)
T 4b4t_R 214 YGIHCLAVRNFKEAAKLLVDSLATFTSIE 242 (429)
T ss_dssp HHHGGGGTSCHHHHHHHHHHHHHHSCCSC
T ss_pred HHHHHHHhChHHHHHHHHHHHhccCCccc
Confidence 99999999999999999999887765443
No 233
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.59 E-value=0.39 Score=35.29 Aligned_cols=80 Identities=10% Similarity=0.077 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCC
Q 022992 152 NQCKQKVAQYAAELE---QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSG 228 (289)
Q Consensus 152 ~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~ 228 (289)
.++.+++|..+++.. +..++|.++++..... .....+.++-+++.|...||+..|+++.+..+++.|.
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~------~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~--- 110 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA------ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN--- 110 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC------GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT---
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC------cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC---
Confidence 467899999998775 5568999998886432 1124556777888899999999999999999988766
Q ss_pred chHHHHHHHHHH
Q 022992 229 TREYRLLSDIAA 240 (289)
Q Consensus 229 ~~e~~~l~~l~~ 240 (289)
...+..|..++.
T Consensus 111 N~QA~~Lk~~Ie 122 (134)
T 3o48_A 111 NKQVGALKSMVE 122 (134)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 456666666664
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.58 E-value=0.22 Score=36.34 Aligned_cols=99 Identities=7% Similarity=0.051 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHHhhccccccchhhHHHHHHHHHH
Q 022992 128 IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHK---SIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQL 204 (289)
Q Consensus 128 ~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 204 (289)
...+...|.+++.. +. ...++.+++|+.++....... +|.++++..... .+ .....+++.+++.|.
T Consensus 17 l~~~~~~y~~e~~~----~~--~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~--~p---~~~Rd~lY~LAvg~y 85 (126)
T 1nzn_A 17 LLKFEKKFQSEKAA----GS--VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SK---EEQRDYVFYLAVGNY 85 (126)
T ss_dssp HHHHHHHHHHHHHH----SC--CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc----CC--CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--Cc---chHHHHHHHHHHHHH
Confidence 34455566655442 22 223678999999998875555 999999876321 01 123456777888899
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHH
Q 022992 205 CKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAA 240 (289)
Q Consensus 205 ~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~ 240 (289)
..|++..|+++++..+++.|. ..++..|..++.
T Consensus 86 klg~Y~~A~~~~~~lL~~eP~---n~QA~~Lk~~i~ 118 (126)
T 1nzn_A 86 RLKEYEKALKYVRGLLQTEPQ---NNQAKELERLID 118 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHH
Confidence 999999999999999998876 446666666554
No 235
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=95.34 E-value=0.72 Score=41.90 Aligned_cols=22 Identities=9% Similarity=-0.139 Sum_probs=17.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHH
Q 022992 41 NSFKLAKSWDKAGATYVKLANC 62 (289)
Q Consensus 41 ~~~~~~g~~~~A~~~~~~a~~~ 62 (289)
..+...|+.++|...|++|+..
T Consensus 221 ~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 221 EYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhC
Confidence 3455678999999999999887
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.12 E-value=0.44 Score=35.90 Aligned_cols=104 Identities=9% Similarity=0.138 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhcCCH------HHHHHHHHHHHHHHhccCccchHH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhc
Q 022992 114 YYKEIAELYESEHNI------EQTIVFFEKAADMFQNEEVTTSAN--QCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (289)
Q Consensus 114 ~l~~la~~~~~~g~~------~~A~~~y~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 185 (289)
.|-......+..|++ ++-++.|++|+...+......+.. ..+.+.+.. ...++.++|...|+.++.. .
T Consensus 15 ~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~--h- 90 (161)
T 4h7y_A 15 DWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN--C- 90 (161)
T ss_dssp HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH--C-
T ss_pred HHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH--h-
Confidence 455555666666888 888999999999877654444443 344555544 5669999999999999753 1
Q ss_pred cccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992 186 NLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT 225 (289)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~ 225 (289)
. .+ +..+...+.--+++|+...|++.+.+++.+.+.
T Consensus 91 K--kF--AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 91 K--KF--AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp T--TB--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred H--HH--HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 1 22 333444444446789999999999999886544
No 237
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.05 E-value=0.69 Score=34.41 Aligned_cols=81 Identities=10% Similarity=0.077 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992 151 ANQCKQKVAQYAAELE---QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS 227 (289)
Q Consensus 151 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~ 227 (289)
..++.++++++++... +..+++.++++..... + ....+.++.+++.+...||+..|+++.+..+++.|.
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~---~---~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~-- 109 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA---E---SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN-- 109 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC---C---STHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC--
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---c---cchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC--
Confidence 4468899999999875 5567999999886421 1 134556777888899999999999999999998876
Q ss_pred CchHHHHHHHHHH
Q 022992 228 GTREYRLLSDIAA 240 (289)
Q Consensus 228 ~~~e~~~l~~l~~ 240 (289)
..++..|..++.
T Consensus 110 -n~QA~~Lk~~Ie 121 (144)
T 1y8m_A 110 -NKQVGALKSMVE 121 (144)
T ss_dssp -CHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHH
Confidence 445666666554
No 238
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=94.82 E-value=1.7 Score=37.26 Aligned_cols=152 Identities=9% Similarity=0.100 Sum_probs=104.9
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHh
Q 022992 27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTS--SNEAISCLEQAVNMFCD 104 (289)
Q Consensus 27 ~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~~--~~~A~~~~~~A~~~~~~ 104 (289)
++|++|+++....+..+...|++..+.+.-.-.++++.+.+-+... ....++..++.... -.+=..+..+|+.-..+
T Consensus 49 k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~-~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~ 127 (336)
T 3lpz_A 49 GNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDG-ASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKK 127 (336)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999999999999977633221 46677788877651 12335566666665555
Q ss_pred cC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH----H--------HHHHhccCccchHHHHHHHHHHHHHHhcCHHHH
Q 022992 105 IG-RLSMAARYYKEIAELYESEHNIEQTIVFFEK----A--------ADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS 171 (289)
Q Consensus 105 ~g-~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~----A--------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 171 (289)
.| .+.+-......+|..+.+.+++.+|..+|-- + ++.+... .+........+..--|..+++...|
T Consensus 128 ~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~-~~~e~dlfiaRaVL~yL~l~n~~~A 206 (336)
T 3lpz_A 128 FGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD-ESHTAPLYCARAVLPYLLVANVRAA 206 (336)
T ss_dssp HSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS-CGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhCCHHHH
Confidence 43 3445556778899999888999999888731 1 1111222 2333333344455566778999999
Q ss_pred HHHHHHHHH
Q 022992 172 IEIYEEIAR 180 (289)
Q Consensus 172 ~~~~~~a~~ 180 (289)
-..+.....
T Consensus 207 ~~~~~~f~~ 215 (336)
T 3lpz_A 207 NTAYRIFTS 215 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887766653
No 239
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.74 E-value=0.34 Score=36.52 Aligned_cols=85 Identities=19% Similarity=0.172 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhc
Q 022992 89 NEAISCLEQAVNMFCD--IGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE 166 (289)
Q Consensus 89 ~~A~~~~~~A~~~~~~--~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 166 (289)
++-++.|++|+...+- ......-+..|.+.|... ..+|++.|.+.|+.++.+. ... +.++...|.+-.+.|
T Consensus 36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~-ei~D~d~aR~vy~~a~~~h----KkF--AKiwi~~AqFEiRqg 108 (161)
T 4h7y_A 36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELK-AIQEPDDARDYFQMARANC----KKF--AFVHISFAQFELSQG 108 (161)
T ss_dssp HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHH-HHHCGGGCHHHHHHHHHHC----TTB--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHh----HHH--HHHHHHHHHHHHHcc
Confidence 5566777777766543 456677889999999774 5599999999999999972 222 678899999999999
Q ss_pred CHHHHHHHHHHHHH
Q 022992 167 QYHKSIEIYEEIAR 180 (289)
Q Consensus 167 ~~~~A~~~~~~a~~ 180 (289)
+...|.+++.+++.
T Consensus 109 nl~kARkILg~AiG 122 (161)
T 4h7y_A 109 NVKKSKQLLQKAVE 122 (161)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhc
Confidence 99999999999973
No 240
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=94.45 E-value=2 Score=36.47 Aligned_cols=129 Identities=13% Similarity=0.039 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcC
Q 022992 88 SNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQ 167 (289)
Q Consensus 88 ~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 167 (289)
+=+|.+.|+....-|.+.+++..+...+...+..+.+.|++..|.++-.--++.+++.+.+... ....++..++.....
T Consensus 29 yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~-~~~~rl~~l~~~~p~ 107 (312)
T 2wpv_A 29 YYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDD-ISVARLVRLIAELDP 107 (312)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSH-HHHHHHHHHHTTCCT
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHCCC
Confidence 3334444444444444444444444444444444444444444444444444444444333221 233344444433211
Q ss_pred HHH-HHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHH
Q 022992 168 YHK-SIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALE 217 (289)
Q Consensus 168 ~~~-A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~ 217 (289)
-+. =.++.++++......+..+++.......+|..+...|++..|+..|-
T Consensus 108 ~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 108 SEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 111 12333444433322222234444555566777777788887777663
No 241
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=94.40 E-value=0.16 Score=46.27 Aligned_cols=63 Identities=13% Similarity=0.158 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (289)
Q Consensus 111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 179 (289)
.-+++..+|.+....+.++.|..+|.+|+.+.+..| ..++.||.+....|+.-+|+-+|.+++
T Consensus 151 ~hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G------~~~nqLavla~~~~~~l~a~y~y~rsl 213 (497)
T 1ya0_A 151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG------QPYNQLAILASSKGDHLTTIFYYCRSI 213 (497)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCC------chHHHHHHHHhcccccHHHHHHHHHHH
Confidence 456899999999999999999999999999999988 478999999999999999999988885
No 242
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.13 E-value=0.56 Score=34.16 Aligned_cols=70 Identities=14% Similarity=0.079 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhcCCHHH---HHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhc
Q 022992 112 ARYYKEIAELYESEHNIEQ---TIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (289)
Q Consensus 112 a~~l~~la~~~~~~g~~~~---A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 185 (289)
..+..++|.++....+... +|.+++..+.- +.+...-+++..+|..+.++|+|++|..+++..+...+++
T Consensus 35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~----~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK----GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence 4567777777777655554 77777765442 2344566899999999999999999999999998665443
No 243
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.89 E-value=2.1 Score=40.68 Aligned_cols=102 Identities=10% Similarity=0.026 Sum_probs=52.2
Q ss_pred HHcCCHHHHHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 022992 44 KLAKSWDKAGA---------TYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARY 114 (289)
Q Consensus 44 ~~~g~~~~A~~---------~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~ 114 (289)
...|++++|.+ ...++++.+.+.++...|..+|.+++ +++.+.. ++...|+.. .
T Consensus 663 l~~~~~~~A~~~~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~------d~~~l~~-------l~~~~~~~~----~ 725 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNAH------DLESLFL-------LHSSFNNKE----G 725 (814)
T ss_dssp HHHTCHHHHHHHHTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT------CHHHHHH-------HHHHTTCHH----H
T ss_pred hhcCCHHHHHHHHHhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHcc------ChhhhHH-------HHHHcCCHH----H
Confidence 44567777733 44566666666677666666665543 3333322 233344332 2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 022992 115 YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYE 176 (289)
Q Consensus 115 l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 176 (289)
+.+++.+....|+++.|...|.+. |+ ......+|.+++++++|+.+-+
T Consensus 726 ~~~~~~~a~~~~~~~~A~~~~~~~-------g~-------~~~a~~~~~~~~~~~~A~~lA~ 773 (814)
T 3mkq_A 726 LVTLAKDAETTGKFNLAFNAYWIA-------GD-------IQGAKDLLIKSQRFSEAAFLGS 773 (814)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-------TC-------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCchHHHHHHHHHc-------CC-------HHHHHHHHHHcCChHHHHHHHH
Confidence 445555555556666665555432 11 1223344555556666655444
No 244
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=93.15 E-value=0.18 Score=46.04 Aligned_cols=61 Identities=18% Similarity=0.252 Sum_probs=55.5
Q ss_pred HHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 022992 74 QAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAAD 140 (289)
Q Consensus 74 ~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~ 140 (289)
+++..+|.+.+.. .+..|..+|.+|..+.+..|. .++.+|.+....|+.-+|+-+|.+++-
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~------~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQ------PYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSH------HHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCc------hHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 4677889998777 899999999999999999997 899999999999999999999999974
No 245
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=92.54 E-value=5.8 Score=35.82 Aligned_cols=47 Identities=11% Similarity=0.059 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc
Q 022992 52 AGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI 105 (289)
Q Consensus 52 A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~ 105 (289)
....|++++...... ...+...+..+... ++++|...|++|+.. +..
T Consensus 198 v~~~ye~al~~~p~~------~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~ 245 (493)
T 2uy1_A 198 MHFIHNYILDSFYYA------EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDG 245 (493)
T ss_dssp HHHHHHHHHHHTTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCS
T ss_pred HHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCc
Confidence 345666666543221 34455555555444 888999999999887 543
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.32 E-value=1.5 Score=38.44 Aligned_cols=61 Identities=10% Similarity=-0.053 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992 113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (289)
Q Consensus 113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 179 (289)
.++..++..+...|++++++..+.+++...+-.. ..+..+..++...|+..+|++.|++..
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E------~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYRE------PLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH------HHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3556677777888999999999999988766432 367888889999999999999999885
No 247
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.09 E-value=3.3 Score=31.99 Aligned_cols=80 Identities=4% Similarity=0.024 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccch
Q 022992 113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGV 192 (289)
Q Consensus 113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 192 (289)
..|..+|......|+++-|.++|+++-++ ..+.-+|.-.|+.+.=.+.-+.+. .
T Consensus 35 ~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~--------------~~L~~Ly~~tg~~e~L~kla~iA~------------~ 88 (177)
T 3mkq_B 35 ITWERLIQEALAQGNASLAEMIYQTQHSF--------------DKLSFLYLVTGDVNKLSKMQNIAQ------------T 88 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTTCH--------------HHHHHHHHHHTCHHHHHHHHHHHH------------H
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhCCH--------------HHHHHHHHHhCCHHHHHHHHHHHH------------H
Confidence 36777777777777777777777665332 223334444555443322222221 0
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHH
Q 022992 193 KGHLLNAGICQLCKGDVVAITNALER 218 (289)
Q Consensus 193 ~~~~~~~~~~~l~~gd~~~A~~~~~~ 218 (289)
.+.+..+..+++..||++++.+.|.+
T Consensus 89 ~g~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 89 REDFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp TTCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 11123345677778888887777754
No 248
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.26 E-value=2 Score=37.70 Aligned_cols=166 Identities=11% Similarity=0.125 Sum_probs=97.3
Q ss_pred CHHHHHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccc--hHHH
Q 022992 87 SSNEAISCLEQAVNMFCDI-----------GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT--SANQ 153 (289)
Q Consensus 87 ~~~~A~~~~~~A~~~~~~~-----------g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~--~~~~ 153 (289)
++++|++++++........ ........+...++..|...|+.++|..+.+++-......++.. ....
T Consensus 91 d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~ 170 (393)
T 4b4t_O 91 DFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNS 170 (393)
T ss_dssp CHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHH
Confidence 7788888777654332211 11233456777888888888999999999999998877665433 3445
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh-ccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC---CCCc
Q 022992 154 CKQKVAQYAAELEQYHKSIEIYEEIARQSLN-NNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT---FSGT 229 (289)
Q Consensus 154 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~---~~~~ 229 (289)
.+.-.+..+...++|..+...+-........ ............+.++.+-+...+. -.|.+.+. .|. +..+
T Consensus 171 ~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~all~~~i----~~f~eLL~-~p~i~~L~~~ 245 (393)
T 4b4t_O 171 FYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPSTSITLAERQQLAYDLSISALLGDKI----YNFGELLH-HPIMETIVND 245 (393)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSSCSHHHHHHHHHHHHHHHHHCCSS----CSTHHHHH-SCCTTSSCSS
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHcCCCC----CChHHHhC-ChHHHHhhcC
Confidence 5666677788888988877665555432211 1111111111223334443332211 11333232 222 2334
Q ss_pred hHHHHHHHHHHHHcccCHHHHHHHHHhc
Q 022992 230 REYRLLSDIAASMDEEDIAKFTDVVKEF 257 (289)
Q Consensus 230 ~e~~~l~~l~~a~~~~d~~~~~~al~~~ 257 (289)
.+...+..|+.++..||...|...++.+
T Consensus 246 ~~~~~l~~Ll~~f~~g~~~~f~~~~~~~ 273 (393)
T 4b4t_O 246 SNYDWLFQLLNALTVGDFDKFDSLIKVQ 273 (393)
T ss_dssp SSTTHHHHHHHHHHHTCHHHHHHHCCHH
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 4555677899999999999998876543
No 249
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=91.11 E-value=7.8 Score=34.51 Aligned_cols=125 Identities=15% Similarity=0.093 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHHHhcCCHHHHH
Q 022992 35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT--SSNEAISCLEQAVNMFCDIGRLSMAA 112 (289)
Q Consensus 35 ~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~--~~~~A~~~~~~A~~~~~~~g~~~~~a 112 (289)
+--+..+.|+..++.+.=+....+.++.+...+++.+||-++...+.++... ..-.++. .. ..++..-.....-
T Consensus 17 ~~~~l~~~y~~~~~~el~i~~l~~L~~~h~~~~ny~EAa~~l~lhA~l~~w~~~~~~~~~~---~~-~~~~~qt~~~~ke 92 (436)
T 2yin_A 17 CTVNLLNFYKDNNREEMYIRYLYKLRDLHLDCDNYTEAAYTLLLHTWLLKWSDEQCASQVM---QT-GQQHPQTHRQLKE 92 (436)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSCCC------------------CHHHHHH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHhCCCccccCcccc---cC-CCCccccHHHHHH
Confidence 4557778888888899999999999999999999999999887766655433 1111110 00 0111111112223
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-CccchHHHHHHHHHHHHH
Q 022992 113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNE-EVTTSANQCKQKVAQYAA 163 (289)
Q Consensus 113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~-~~~~~~~~~~~~l~~~~~ 163 (289)
..+..+...+..-+.++.|+..|+..+..++.. -+....+.++..++.+|.
T Consensus 93 ~L~~~~i~~f~kg~~~E~ai~l~k~L~~~yE~~~~Dy~~Ls~~~~~~a~~y~ 144 (436)
T 2yin_A 93 TLYETIIGYFDKGKMWEEAISLCKELAEQYEMEIFDYELLSQNLIQQAKFYE 144 (436)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777678888888888888888874 555556666666666654
No 250
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=91.05 E-value=2 Score=28.67 Aligned_cols=32 Identities=28% Similarity=0.349 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992 113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (289)
Q Consensus 113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~ 144 (289)
..+..-|.-....|++++|+.+|.+|++.+..
T Consensus 20 i~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~ 51 (83)
T 2w2u_A 20 RKYAINAVKADKEGNAEEAITNYKKAIEVLAQ 51 (83)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 33444455566779999999999999998753
No 251
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.81 E-value=0.84 Score=33.96 Aligned_cols=70 Identities=7% Similarity=0.011 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Q 022992 110 MAARYYKEIAELYESEH---NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN 184 (289)
Q Consensus 110 ~~a~~l~~la~~~~~~g---~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 184 (289)
-...+..+.|.++.... +..++|.+++..+.. .+...-+|+..+|.-+.++|+|++|.++.+..+...++
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-----~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-----CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 45566777777776653 346788888876652 22345689999999999999999999999998855443
No 252
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.77 E-value=0.98 Score=33.15 Aligned_cols=69 Identities=7% Similarity=0.003 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Q 022992 111 AARYYKEIAELYESEH---NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN 184 (289)
Q Consensus 111 ~a~~l~~la~~~~~~g---~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 184 (289)
...+..+.|.++.... +..++|..++..+... +....+|+..+|.-+.++|+|++|.++.+..+...++
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~-----~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-----ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-----cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 3456666666666543 4567888887766521 3345689999999999999999999999998755433
No 253
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.08 E-value=9.7 Score=36.45 Aligned_cols=85 Identities=8% Similarity=0.135 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHh----c--CCH------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHH
Q 022992 88 SNEAISCLEQAVNMFCD----I--GRL------SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCK 155 (289)
Q Consensus 88 ~~~A~~~~~~A~~~~~~----~--g~~------~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~ 155 (289)
=-+|+....++++-... . .+. ...+..|..-+..+...|+++-|+++-++|+.+.+.. ..++
T Consensus 301 Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPse------F~tW 374 (754)
T 4gns_B 301 ELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDS------FESW 374 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC------HHHH
T ss_pred hHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchh------hHHH
Confidence 34677777777653321 1 111 1223355555666666799999999999999987653 4689
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHH
Q 022992 156 QKVAQYAAELEQYHKSIEIYEEI 178 (289)
Q Consensus 156 ~~l~~~~~~~g~~~~A~~~~~~a 178 (289)
..|+.+|+.+|+|+.|+=.+...
T Consensus 375 ~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 375 YNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccHHHHHHHHhcC
Confidence 99999999999999999866544
No 254
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=88.38 E-value=4.4 Score=27.57 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (289)
Q Consensus 111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~ 144 (289)
.|..+..-|.-....|++++|+.+|..|++++..
T Consensus 14 ~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~ 47 (93)
T 1wfd_A 14 AAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQ 47 (93)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 4444555556667779999999999999998764
No 255
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=88.31 E-value=4.1 Score=27.12 Aligned_cols=35 Identities=9% Similarity=0.001 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (289)
Q Consensus 110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~ 144 (289)
..|..+..-|.-....|++++|+.+|..|++++..
T Consensus 11 ~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~ 45 (85)
T 2v6x_A 11 TKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLML 45 (85)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 34444555556666779999999999999998653
No 256
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.25 E-value=3.2 Score=37.79 Aligned_cols=138 Identities=7% Similarity=-0.035 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHH--HHHHhcCC---HHHHHHHHHHHHHHHHhcCCHHHH----------HHHHHHHHHHHhccCccchH
Q 022992 87 SSNEAISCLEQAV--NMFCDIGR---LSMAARYYKEIAELYESEHNIEQT----------IVFFEKAADMFQNEEVTTSA 151 (289)
Q Consensus 87 ~~~~A~~~~~~A~--~~~~~~g~---~~~~a~~l~~la~~~~~~g~~~~A----------~~~y~~A~~~~~~~~~~~~~ 151 (289)
++++|.++-...+ +.....+. -...|++|.-.+.+++..|+.... ...+..++....-..+....
T Consensus 151 ~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~q 230 (523)
T 4b4t_S 151 ELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETK 230 (523)
T ss_dssp ----------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchh
Confidence 6778888776555 22222221 124678888888888877776543 23444555544444556677
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC
Q 022992 152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTF 226 (289)
Q Consensus 152 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~ 226 (289)
+.+++-+-..|...+.|+.|..+..+... +...........+++-.|.++..++++.+|.++|..+....|.-
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~f--P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEY--PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCS--CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcC--CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 88899999999999999999999998842 11111112234566678999999999999999999988766653
No 257
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=87.94 E-value=2.7 Score=30.08 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (289)
Q Consensus 111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~ 144 (289)
.|..+...|.-....|+|++|+.+|..|++++-.
T Consensus 17 kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~ 50 (117)
T 2cpt_A 17 KAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLH 50 (117)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 3444445555566669999999999999998754
No 258
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.74 E-value=11 Score=32.80 Aligned_cols=90 Identities=10% Similarity=-0.032 Sum_probs=61.8
Q ss_pred cCCHHHHHHHHHHHHHHHhccC-----ccchH-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccc
Q 022992 125 EHNIEQTIVFFEKAADMFQNEE-----VTTSA-----------NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLL 188 (289)
Q Consensus 125 ~g~~~~A~~~y~~A~~~~~~~~-----~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 188 (289)
.|+++.|+..+.+|+.+++..- ...+. ..+...++..+...|++.+|+..++.++... +
T Consensus 128 ~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~---P-- 202 (388)
T 2ff4_A 128 AGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH---P-- 202 (388)
T ss_dssp TTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---T--
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---C--
Confidence 4788888999999988876421 11111 1344566677788999999999998886432 1
Q ss_pred ccchhhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022992 189 KYGVKGHLLNAGICQLCKGDVVAITNALERYQD 221 (289)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~ 221 (289)
+.. ..+..+..++...|+..+|.+.|+++..
T Consensus 203 -~~E-~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 203 -YRE-PLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp -TCH-HHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred -CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111 1334455677889999999999988754
No 259
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=87.48 E-value=1.4 Score=29.42 Aligned_cols=29 Identities=24% Similarity=0.511 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 022992 115 YKEIAELYESEHNIEQTIVFFEKAADMFQ 143 (289)
Q Consensus 115 l~~la~~~~~~g~~~~A~~~y~~A~~~~~ 143 (289)
+..-|.-....|++++|+.+|.+|++.+.
T Consensus 14 lv~~Ave~D~~g~y~eAl~lY~~aie~l~ 42 (83)
T 2v6y_A 14 YAILAVKADKEGKVEDAITYYKKAIEVLS 42 (83)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 33344445566888888888888887764
No 260
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=86.94 E-value=8.3 Score=34.22 Aligned_cols=92 Identities=11% Similarity=0.100 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh----c-----C----------------------------CHHHHHHH
Q 022992 33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLK----L-----E----------------------------SKHEAAQA 75 (289)
Q Consensus 33 ~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~----~-----~----------------------------~~~~aa~~ 75 (289)
...+.+.+..+...|+|.+|+-|+..++.+.-. . + ...+.-..
T Consensus 11 ~~wl~~La~~h~~~~n~~EAa~cl~~~aaliae~L~~~~~~~~~~~~f~~i~p~~~ee~~~~~d~g~~~~~fte~~l~~l 90 (428)
T 2wm9_A 11 KTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGVFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMEL 90 (428)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHTTSSSCCGGGGTTTCGGGGGGC---------CCSSSHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhcCCCccchhccccccCCCccccCHHHHHHH
Confidence 445666777777777777777777644432211 0 0 01112224
Q ss_pred HHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 022992 76 YVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES 124 (289)
Q Consensus 76 ~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~ 124 (289)
+..++..+.++ .++.|+.+|+..+.+|....++...+.++..++.+|..
T Consensus 91 l~~ai~~f~kg~~~E~ai~~~k~L~~~ye~~~dy~~Ls~~~~~~a~~y~~ 140 (428)
T 2wm9_A 91 LEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSK 140 (428)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHTTTHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 56666666666 77888888888888888777877777777777777664
No 261
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=86.57 E-value=5.5 Score=26.68 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (289)
Q Consensus 111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~ 144 (289)
.|..+..-|.-....|++++|+.+|..|++++-.
T Consensus 15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~ 48 (86)
T 4a5x_A 15 AAATVLKRAVELDSESRYPQALVCYQEGIDLLLQ 48 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4445555566667779999999999999998753
No 262
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=86.55 E-value=5 Score=39.86 Aligned_cols=103 Identities=11% Similarity=0.023 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccccc
Q 022992 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKY 190 (289)
Q Consensus 111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 190 (289)
.-.+++.+=..+.+.|+.++|...|.+..+.-.. |-.... .+|+-+..-+.+.|++++|.++|++...........
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~k-G~~Pdv-vTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvv-- 201 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQK-RKLLTL-DMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL-- 201 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHH-HTTCCH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH--
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc-CCCCCH-hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH--
Confidence 3446777777777778888888888765443221 111112 367888888888899999999988886433222211
Q ss_pred chhhHHHHHHHHHHccCC-HHHHHHHHHHHhh
Q 022992 191 GVKGHLLNAGICQLCKGD-VVAITNALERYQD 221 (289)
Q Consensus 191 ~~~~~~~~~~~~~l~~gd-~~~A~~~~~~~~~ 221 (289)
.|..+..++...|. .+.|.+.|++..+
T Consensus 202 ----TYntLI~glcK~G~~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 202 ----SYAAALQCMGRQDQDAGTIERCLEQMSQ 229 (1134)
T ss_dssp ----HHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 22333334444464 4567777776543
No 263
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=86.25 E-value=2.1 Score=28.99 Aligned_cols=38 Identities=16% Similarity=0.058 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992 107 RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (289)
Q Consensus 107 ~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~ 144 (289)
.+...|......+..+...|+|++||++.++|+.+..+
T Consensus 10 spLn~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~e 47 (97)
T 2crb_A 10 GPLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSE 47 (97)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 34556777777888888889999999999998877654
No 264
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.80 E-value=5.9 Score=39.87 Aligned_cols=127 Identities=8% Similarity=-0.027 Sum_probs=86.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcC----CH-------------HHHHHHHHHHHHHHccC-CHHHHHHHHHHHHH
Q 022992 39 AANSFKLAKSWDKAGATYVKLANCHLKLE----SK-------------HEAAQAYVDAAHCYKKT-SSNEAISCLEQAVN 100 (289)
Q Consensus 39 A~~~~~~~g~~~~A~~~~~~a~~~~~~~~----~~-------------~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~ 100 (289)
.|.+|...|++++|..+|.+|+......+ .. ..-...|..+..++.+. .++-+++..+.|++
T Consensus 848 ~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~ 927 (1139)
T 4fhn_B 848 KALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA 927 (1139)
T ss_dssp HHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 47788899999999999998854321111 00 11234677777777655 78889999999987
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHH
Q 022992 101 MFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIE 173 (289)
Q Consensus 101 ~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 173 (289)
.. ..++.......|.++=..+...|+|++|....... +.. ....+|+..+...+++.|..+.=+.
T Consensus 928 ~~-~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~----pd~---~~r~~cLr~LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 928 SK-ETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL----STT---PLKKSCLLDFVNQLTKQGKINQLLN 992 (1139)
T ss_dssp HC-CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH----HHS---SSCHHHHHHHHHHHHHHCCHHHHHH
T ss_pred hc-cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC----CCH---HHHHHHHHHHHHHHHhCCChhhhhC
Confidence 53 34555556667888888888889999987766432 211 1234688888888887776665544
No 265
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=81.80 E-value=4.1 Score=27.10 Aligned_cols=35 Identities=17% Similarity=-0.018 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 022992 29 YEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHL 64 (289)
Q Consensus 29 ~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~ 64 (289)
.+.|+++..+|- -....|++++|+.+|.++++.+.
T Consensus 16 ~~~Ai~lv~~Av-e~D~~g~y~eAl~lY~~aie~l~ 50 (83)
T 2w2u_A 16 EEMARKYAINAV-KADKEGNAEEAITNYKKAIEVLA 50 (83)
T ss_dssp HHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHhccHHHHHHHHHHHHHHHH
Confidence 345666555553 34567788888888877777764
No 266
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=80.20 E-value=4 Score=27.38 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 022992 27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHL 64 (289)
Q Consensus 27 ~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~ 64 (289)
|....|+++..+|-.. ...|++++|+.+|..+++.+.
T Consensus 11 ~~~~~A~~lv~~Ave~-D~~g~y~eAl~lY~~Aie~ll 47 (86)
T 4a5x_A 11 PQSTAAATVLKRAVEL-DSESRYPQALVCYQEGIDLLL 47 (86)
T ss_dssp CHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHH
Confidence 4445566655555444 567788888888888887765
No 267
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=79.89 E-value=17 Score=36.57 Aligned_cols=102 Identities=10% Similarity=-0.008 Sum_probs=70.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhccC-----------------ccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 022992 116 KEIAELYESEHNIEQTIVFFEKAADMFQNEE-----------------VTTSANQCKQKVAQYAAELEQYHKSIEIYEEI 178 (289)
Q Consensus 116 ~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~-----------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 178 (289)
.-+|.++...|++++|..+|++|..-..... ........|..+..++...|.++.+++..+.+
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA 925 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA 925 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5679999999999999999999854322111 11223356788888899999999999998888
Q ss_pred HHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHH
Q 022992 179 ARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY 219 (289)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~ 219 (289)
+.....+.. .. ....+.++...++..|+++.|-.++-..
T Consensus 926 i~~~~~~~~-~~-~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 926 DASKETDDE-DL-SIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHCCSCCH-HH-HHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHhccCCCh-hh-HHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 754321111 11 1234667777888889998887777543
No 268
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=79.85 E-value=5.2 Score=26.56 Aligned_cols=34 Identities=15% Similarity=-0.067 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 022992 30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHL 64 (289)
Q Consensus 30 ~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~ 64 (289)
+.|+++..+|- -....|++++|+.+|..+++.+.
T Consensus 9 ~~Ai~lv~~Av-e~D~~g~y~eAl~lY~~aie~l~ 42 (83)
T 2v6y_A 9 DMARKYAILAV-KADKEGKVEDAITYYKKAIEVLS 42 (83)
T ss_dssp HHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHhccHHHHHHHHHHHHHHHH
Confidence 34555444443 23556677777777777666654
No 269
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens}
Probab=79.41 E-value=27 Score=29.29 Aligned_cols=117 Identities=13% Similarity=-0.020 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHccC---CHHHHHHHHHHHHHH
Q 022992 29 YEDAADLFDKAANSFKLAKS---WDKAGATYVKLANCHLK-LESKHEAAQAYVDAAHCYKKT---SSNEAISCLEQAVNM 101 (289)
Q Consensus 29 ~~~A~~~~~~A~~~~~~~g~---~~~A~~~~~~a~~~~~~-~~~~~~aa~~~~~~a~~~~~~---~~~~A~~~~~~A~~~ 101 (289)
.+.|..+|-+++.+-...|- -+-|.++|.+|..+|++ ..+....-.++..+.....+. ..+.--..-.++...
T Consensus 95 ~elalrL~Lq~A~~ad~~~~~~~e~iaYEFf~qAf~iYEe~IsdSk~Q~~al~~ii~tL~~~~~f~~enye~L~tk~t~~ 174 (298)
T 2r17_C 95 AELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALA 174 (298)
T ss_dssp CHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHccCCCHhhHHHHHHHHHHH
Confidence 45566666666665555554 55667777777777775 556655555555555544333 333333333343333
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHHHHhcc
Q 022992 102 FCDIGRLSMAARYYKEIAELYES----------EHNIEQTIVFFEKAADMFQNE 145 (289)
Q Consensus 102 ~~~~g~~~~~a~~l~~la~~~~~----------~g~~~~A~~~y~~A~~~~~~~ 145 (289)
..+.=......++....+.++.. ..|.+..+++++||+.+...-
T Consensus 175 askLLKK~dQcraV~~cshLfW~~~~~~~~~~~~rd~krVleCLqkaLkiA~~~ 228 (298)
T 2r17_C 175 ASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQC 228 (298)
T ss_dssp HHTCSSHHHHHHHHHHTHHHHHTCBCTTTTTCBCCCHHHHHHHHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHHhcCCCccccchhhccchHHHHHHHHHHHHHHHHH
Confidence 33333344455555666666642 146778888888888876654
No 270
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=78.58 E-value=22 Score=31.75 Aligned_cols=163 Identities=11% Similarity=-0.017 Sum_probs=94.7
Q ss_pred CHHHHHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---cC--ccchH
Q 022992 87 SSNEAISCLEQAVNMFCDIG----------RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQN---EE--VTTSA 151 (289)
Q Consensus 87 ~~~~A~~~~~~A~~~~~~~g----------~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~---~~--~~~~~ 151 (289)
.++++.....++-....... ...+.-....++-.+|.+.+++.-+-..+ ++++--.. .. .....
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~-k~i~~~~~~p~~~~~p~~q~ 219 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIF-KNFQPKSMLAHFNEYQLDQQ 219 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHH-HTHHHHCCCSCGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHH-HHhccCCCCcChhhCCccce
Confidence 34555555555555433211 12233444556678888889888777666 44443211 11 12345
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-Hhhcccc--ccchh-hHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992 152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQ-SLNNNLL--KYGVK-GHLLNAGICQLCKGDVVAITNALERYQDMDPTFS 227 (289)
Q Consensus 152 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~--~~~~~-~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~ 227 (289)
...+.-+|.++...++|.+|.+.+..|... +...... ..+.. ..+.-+..+.+.+|+.+. ...+++. .
T Consensus 220 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~~P~-~~ll~k~-------~ 291 (455)
T 3t5v_B 220 IEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKMVK-WGPLRPF-------L 291 (455)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCCBC-HHHHGGG-------S
T ss_pred EeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHcCCCCC-HHHHccc-------c
Confidence 567889999999999999999999999866 5432100 00111 112223345556676543 1223221 0
Q ss_pred CchHH-HHHHHHHHHHcccCHHHHHHHHHhccc
Q 022992 228 GTREY-RLLSDIAASMDEEDIAKFTDVVKEFDS 259 (289)
Q Consensus 228 ~~~e~-~~l~~l~~a~~~~d~~~~~~al~~~~~ 259 (289)
..+- .....|..|+..||+..|..+++.+..
T Consensus 292 -~~~L~~~y~~L~~AVr~Gdl~~F~~~L~~~~~ 323 (455)
T 3t5v_B 292 -SQETIDNWSVLYKHVRYGNIQGVSLWLRQNER 323 (455)
T ss_dssp -CHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred -hHHHHHHHHHHHHHHHhCCHHHHHHHHHHhHH
Confidence 1121 224568889999999999999998765
No 271
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=77.06 E-value=8.9 Score=30.18 Aligned_cols=29 Identities=14% Similarity=0.007 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992 153 QCKQKVAQYAAELEQYHKSIEIYEEIARQ 181 (289)
Q Consensus 153 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 181 (289)
....-+|.++...++|.+|.+.+.++...
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 43 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEH 43 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 34555666666666666666666666544
No 272
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=75.74 E-value=7.2 Score=26.42 Aligned_cols=29 Identities=14% Similarity=0.070 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 022992 35 LFDKAANSFKLAKSWDKAGATYVKLANCH 63 (289)
Q Consensus 35 ~~~~A~~~~~~~g~~~~A~~~~~~a~~~~ 63 (289)
.+..=+..+...|.|++|++|+.+|+...
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa~yL 45 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKATTYL 45 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 34444555556666666666666666544
No 273
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=75.66 E-value=25 Score=26.99 Aligned_cols=98 Identities=12% Similarity=0.058 Sum_probs=55.5
Q ss_pred HcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 022992 45 LAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYE 123 (289)
Q Consensus 45 ~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~ 123 (289)
..|+++.|.+.... +++ -..|.++|...... +++-|..||+++ |+ +..+..+|.
T Consensus 17 ~lg~l~~A~e~a~~-------l~~----~~~Wk~Lg~~AL~~gn~~lAe~cy~~~-------~D-------~~~L~~Ly~ 71 (177)
T 3mkq_B 17 EYGNLDAALDEAKK-------LND----SITWERLIQEALAQGNASLAEMIYQTQ-------HS-------FDKLSFLYL 71 (177)
T ss_dssp HTTCHHHHHHHHHH-------HCC----HHHHHHHHHHHHHTTCHHHHHHHHHHT-------TC-------HHHHHHHHH
T ss_pred hcCCHHHHHHHHHH-------hCC----HHHHHHHHHHHHHcCChHHHHHHHHHh-------CC-------HHHHHHHHH
Confidence 34666666665332 222 34778888877555 888888887765 33 223334444
Q ss_pred hcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 022992 124 SEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI 178 (289)
Q Consensus 124 ~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 178 (289)
..|+.+. +.+-.++....|+ ++....++..+|++++++++|.+.
T Consensus 72 ~tg~~e~----L~kla~iA~~~g~-------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 72 VTGDVNK----LSKMQNIAQTRED-------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHTCHHH----HHHHHHHHHHTTC-------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HhCCHHH----HHHHHHHHHHCcc-------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 4455543 2233333333332 122334566788888888888665
No 274
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=74.39 E-value=8.7 Score=26.08 Aligned_cols=37 Identities=14% Similarity=0.175 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 022992 28 KYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLK 65 (289)
Q Consensus 28 ~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~ 65 (289)
-.+.|+++..+|-.. ...|++++|+.+|..+++.+..
T Consensus 11 ~l~~Ai~lv~~Ave~-D~~g~y~eAl~~Y~~Aie~l~~ 47 (93)
T 1wfd_A 11 DSTAAVAVLKRAVEL-DAESRYQQALVCYQEGIDMLLQ 47 (93)
T ss_dssp HHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHH
Confidence 355677666666444 5668888888888888888753
No 275
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=73.83 E-value=29 Score=26.80 Aligned_cols=64 Identities=17% Similarity=0.164 Sum_probs=46.7
Q ss_pred HHHHHccC-CHHHHHHHHHHHHHHHHhc------------CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 022992 79 AAHCYKKT-SSNEAISCLEQAVNMFCDI------------GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMF 142 (289)
Q Consensus 79 ~a~~~~~~-~~~~A~~~~~~A~~~~~~~------------g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~ 142 (289)
-+.||... ++.+|+.+.+..++--.+. =++...--.+..+|.++.+.|+.++||.+|..+..+.
T Consensus 68 k~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~ 144 (242)
T 3kae_A 68 ESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKS 144 (242)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCc
Confidence 35677666 9999999999887211110 1222344567889999999999999999999987654
No 276
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=71.73 E-value=10 Score=27.05 Aligned_cols=35 Identities=29% Similarity=0.331 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 022992 29 YEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHL 64 (289)
Q Consensus 29 ~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~ 64 (289)
.+.|+.+..+|-.. ...|++++|+.+|..+++.+.
T Consensus 15 l~kAi~lv~~Ave~-D~ag~y~eAl~lY~~Aie~l~ 49 (117)
T 2cpt_A 15 LQKAIDLASKAAQE-DKAGNYEEALQLYQHAVQYFL 49 (117)
T ss_dssp HHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHccCHHHHHHHHHHHHHHHH
Confidence 45666666666433 455788888888888887765
No 277
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.50 E-value=16 Score=25.90 Aligned_cols=33 Identities=6% Similarity=0.055 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (289)
Q Consensus 112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~ 144 (289)
|..+.+-|.-..+.|+.+.|+++|++.+..+..
T Consensus 22 AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~ 54 (116)
T 2dl1_A 22 AFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLR 54 (116)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHH
Confidence 344555556666668899999999888877653
No 278
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=70.59 E-value=11 Score=24.92 Aligned_cols=35 Identities=17% Similarity=0.295 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 022992 29 YEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHL 64 (289)
Q Consensus 29 ~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~ 64 (289)
.+.|+.+..+|-. ....|++++|+.+|..+++.+.
T Consensus 10 l~~A~~l~~~Av~-~D~~g~y~eAl~~Y~~aie~l~ 44 (85)
T 2v6x_A 10 LTKGIELVQKAID-LDTATQYEEAYTAYYNGLDYLM 44 (85)
T ss_dssp HHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHH
Confidence 4566666555543 3456777777777777777654
No 279
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=67.94 E-value=65 Score=28.51 Aligned_cols=104 Identities=13% Similarity=0.116 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHhccCccch
Q 022992 73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNI-EQTIVFFEKAADMFQNEEVTTS 150 (289)
Q Consensus 73 a~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~-~~A~~~y~~A~~~~~~~~~~~~ 150 (289)
..+..++...|... .++--+.|+.+-.++....+++..+|.|+...+.++....+. -.++ ... ..++.......
T Consensus 15 ~~~~~~l~~~y~~~~~~el~i~~l~~L~~~h~~~~ny~EAa~~l~lhA~l~~w~~~~~~~~~---~~~-~~~~~qt~~~~ 90 (436)
T 2yin_A 15 MSCTVNLLNFYKDNNREEMYIRYLYKLRDLHLDCDNYTEAAYTLLLHTWLLKWSDEQCASQV---MQT-GQQHPQTHRQL 90 (436)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSCCC------------------CHHHH
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHhCCCccccCccc---ccC-CCCccccHHHH
Confidence 33556777777665 777788888888888888888888888887666554432111 0110 000 00111000011
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992 151 ANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180 (289)
Q Consensus 151 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 180 (289)
....+..+...+.+.+.|+.|+.+|+..+.
T Consensus 91 ke~L~~~~i~~f~kg~~~E~ai~l~k~L~~ 120 (436)
T 2yin_A 91 KETLYETIIGYFDKGKMWEEAISLCKELAE 120 (436)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 123566777777888899999999988863
No 280
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=66.94 E-value=27 Score=30.22 Aligned_cols=93 Identities=12% Similarity=0.121 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHhcc-CccchHHHHHHHHHHHHH
Q 022992 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE--HNIEQTIVFFEKAADMFQNE-EVTTSANQCKQKVAQYAA 163 (289)
Q Consensus 87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~--g~~~~A~~~y~~A~~~~~~~-~~~~~~~~~~~~l~~~~~ 163 (289)
|--+-...-++.+=++-+.|....-..++.++|.+-+.. .....++..|.+|+...+.. ++.+. --+.-+|-++.
T Consensus 230 Ds~El~~LQq~LLWLLyD~GhL~rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~Hv--YPYtylgGy~y 307 (472)
T 3re2_A 230 DSIQLSQLQQELLWLLYDMGHIKTYPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHI--YPYTYLGGYYY 307 (472)
T ss_dssp ECHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCS--HHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhccchhhCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCc--cchhhhhhhhh
Confidence 334566666788888888888888888899999987754 33344899999999886653 22222 24667888999
Q ss_pred HhcCHHHHHHHHHHHHHH
Q 022992 164 ELEQYHKSIEIYEEIARQ 181 (289)
Q Consensus 164 ~~g~~~~A~~~~~~a~~~ 181 (289)
+.+++.+|++++.++...
T Consensus 308 R~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 308 RKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHH
Confidence 999999999999988643
No 281
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=66.10 E-value=39 Score=32.32 Aligned_cols=85 Identities=9% Similarity=0.115 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHHHHh----ccCcc--------chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhh
Q 022992 127 NIEQTIVFFEKAADMFQ----NEEVT--------TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKG 194 (289)
Q Consensus 127 ~~~~A~~~y~~A~~~~~----~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 194 (289)
+--+|+....++++-.. ..... ......+.--+.++...|+|+-|+++.++++...+. . -.
T Consensus 300 ~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs----e---F~ 372 (754)
T 4gns_B 300 KELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD----S---FE 372 (754)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS----C---HH
T ss_pred hhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch----h---hH
Confidence 34567777777775321 11111 111224445567778899999999999999744321 2 24
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHH
Q 022992 195 HLLNAGICQLCKGDVVAITNALER 218 (289)
Q Consensus 195 ~~~~~~~~~l~~gd~~~A~~~~~~ 218 (289)
.|..++.||..+||++.|.=.++-
T Consensus 373 tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 373 SWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHhc
Confidence 578899999999999999877765
No 282
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=65.06 E-value=71 Score=28.72 Aligned_cols=28 Identities=29% Similarity=0.285 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 022992 114 YYKEIAELYESEHNIEQTIVFFEKAADMF 142 (289)
Q Consensus 114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~ 142 (289)
.+.+.|..+.. |..++|-..-++|-++-
T Consensus 490 yy~~AA~k~~y-G~~eqAe~l~~~A~~~~ 517 (526)
T 2wb7_A 490 YYVNAARKALN-GDLEQAKIDAEKAKEYS 517 (526)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-CccHHHHHHHHHHHHHH
Confidence 44444444444 66666655555555443
No 283
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=64.59 E-value=32 Score=30.30 Aligned_cols=93 Identities=14% Similarity=0.163 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHhcc-CccchHHHHHHHHHHHHH
Q 022992 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE--HNIEQTIVFFEKAADMFQNE-EVTTSANQCKQKVAQYAA 163 (289)
Q Consensus 87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~--g~~~~A~~~y~~A~~~~~~~-~~~~~~~~~~~~l~~~~~ 163 (289)
|-.+-...-++-+-+..+.|....-..++.++|.+-+.. ...+.++.+|++|+...+.. ++.+. -.+.-+|-.+.
T Consensus 237 Ds~el~~lQq~LLWlLyd~Ghl~~YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hv--YPYtYlgG~~~ 314 (489)
T 4gq4_A 237 DSLELLQLQQKLLWLLYDLGHLERYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHI--YPYMYLAGYHC 314 (489)
T ss_dssp ECHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCS--HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhccchhhcchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcc--cceeecchHHH
Confidence 446777777888888888888888888999999987754 22345789999999987653 22222 35677888999
Q ss_pred HhcCHHHHHHHHHHHHHH
Q 022992 164 ELEQYHKSIEIYEEIARQ 181 (289)
Q Consensus 164 ~~g~~~~A~~~~~~a~~~ 181 (289)
+.++|.+|+.++.++...
T Consensus 315 R~~~~~eAl~~wa~aa~V 332 (489)
T 4gq4_A 315 RNRNVREALQAWADTATV 332 (489)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHhhhhhhh
Confidence 999999999999998643
No 284
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=63.60 E-value=7.4 Score=25.54 Aligned_cols=28 Identities=18% Similarity=0.382 Sum_probs=19.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 022992 116 KEIAELYESEHNIEQTIVFFEKAADMFQ 143 (289)
Q Consensus 116 ~~la~~~~~~g~~~~A~~~y~~A~~~~~ 143 (289)
.++|.=+...|+|+.|+.+|+.+++...
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~qI~ 43 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLDQMN 43 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 3455556666888888888888876544
No 285
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=62.96 E-value=41 Score=29.64 Aligned_cols=92 Identities=14% Similarity=0.164 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHhcc-CccchHHHHHHHHHHHH
Q 022992 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE---HNIEQTIVFFEKAADMFQNE-EVTTSANQCKQKVAQYA 162 (289)
Q Consensus 87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~---g~~~~A~~~y~~A~~~~~~~-~~~~~~~~~~~~l~~~~ 162 (289)
+--+-...-++.+=++-+.|....-..++.++|.+-+.. |++ .++.+|.+|+...+.. ++.+. --+.-+|-++
T Consensus 252 ds~el~~LQq~LLWlLyd~GhL~rYPmALgnLgDLEe~~pt~gr~-~~~~L~~~AI~sa~~~Y~n~Hv--YPYtYlgGy~ 328 (550)
T 3u84_A 252 DSLELLQLQQKLLWLLYDLGHLERYPMALGNLADLEELEPTPGRP-DPLTLYHKGIASAKTYYRDEHI--YPYMYLAGYH 328 (550)
T ss_dssp BCHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTCC-CHHHHHHHHHHHHHHHSTTCCS--HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhccchhhCchhhcchhhHhhcCCCCCCC-CHHHHHHHHHHHHHHHhccCCc--cceeecchhh
Confidence 334566666788888888888888888899999887754 443 4899999999876643 22222 2467788899
Q ss_pred HHhcCHHHHHHHHHHHHHH
Q 022992 163 AELEQYHKSIEIYEEIARQ 181 (289)
Q Consensus 163 ~~~g~~~~A~~~~~~a~~~ 181 (289)
.+.++|.+|+.++.++...
T Consensus 329 yR~~~~reAl~~WA~Aa~V 347 (550)
T 3u84_A 329 CRNRNVREALQAWADTATV 347 (550)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHHHHH
Confidence 9999999999999988643
No 286
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=60.89 E-value=9.8 Score=24.61 Aligned_cols=31 Identities=10% Similarity=0.101 Sum_probs=25.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 022992 115 YKEIAELYESEHNIEQTIVFFEKAADMFQNE 145 (289)
Q Consensus 115 l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~ 145 (289)
-..+|..+...|++++|+.+|-+|+.++..-
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 3567888888899999999999999887643
No 287
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=58.53 E-value=1.5e+02 Score=29.61 Aligned_cols=120 Identities=8% Similarity=-0.000 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-HhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCc
Q 022992 151 ANQCKQKVAQYAAELEQYHKSIEIYEEIARQ-SLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGT 229 (289)
Q Consensus 151 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~ 229 (289)
.-..++.+-+.+++.|+.++|.++|.+.... ..+-. .....|..+...+...|+.++|.+.|++..+. ++.
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~----PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~--G~~-- 197 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKL----LTLDMYNAVMLGWARQGAFKELVYVLFMVKDA--GLT-- 197 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTT----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCC--
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCC----CCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCC--
Confidence 3457899999999999999999999876421 11110 11123344455566789999999999987552 232
Q ss_pred hHHHHHHHHHHHHc-ccC-HHHHHHHHHhccccCC----------CchhHHHHHHHHHHhc
Q 022992 230 REYRLLSDIAASMD-EED-IAKFTDVVKEFDSMTP----------LDPWKTTLLLRVKEKL 278 (289)
Q Consensus 230 ~e~~~l~~l~~a~~-~~d-~~~~~~al~~~~~~~~----------~d~~~~~~~~~~~~~~ 278 (289)
+.....+.|+.+++ .|. .+...+.++.+..-+- ++...+..+.+..+.+
T Consensus 198 PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 198 PDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp CCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred CcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 22344555566554 444 3333344444333221 2222334566666665
No 288
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=57.53 E-value=16 Score=32.36 Aligned_cols=53 Identities=17% Similarity=0.226 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcc
Q 022992 33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK 85 (289)
Q Consensus 33 ~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~ 85 (289)
.+++.++...|...+.|+.|+.+|...+..|....++..-+.++..++.+|..
T Consensus 88 ~~ll~~ai~~f~kg~~~E~ai~~~k~L~~~ye~~~dy~~Ls~~~~~~a~~y~~ 140 (428)
T 2wm9_A 88 MELLEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSK 140 (428)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHTTTHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 44788889999999999999999999999999888888888888888777753
No 289
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=55.40 E-value=69 Score=24.68 Aligned_cols=62 Identities=8% Similarity=0.030 Sum_probs=45.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhccC------------ccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992 118 IAELYESEHNIEQTIVFFEKAADMFQNEE------------VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (289)
Q Consensus 118 la~~~~~~g~~~~A~~~y~~A~~~~~~~~------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 179 (289)
-+.|+....+|..|+.+.+..++--.+.+ ++...--.+..+|.++..+|+-++|+.+|....
T Consensus 68 k~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 68 ESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 35677888999999999999983211111 123333466889999999999999999998773
No 290
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=55.27 E-value=15 Score=25.01 Aligned_cols=30 Identities=10% Similarity=0.110 Sum_probs=24.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992 115 YKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (289)
Q Consensus 115 l~~la~~~~~~g~~~~A~~~y~~A~~~~~~ 144 (289)
-..+|..+...|+++.|+.||-+|+.++..
T Consensus 23 eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 23 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 356778877779999999999999888754
No 291
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=55.06 E-value=55 Score=32.22 Aligned_cols=65 Identities=9% Similarity=0.034 Sum_probs=44.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhccC-----------------ccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 022992 116 KEIAELYESEHNIEQTIVFFEKAADMFQNEE-----------------VTTSANQCKQKVAQYAAELEQYHKSIEIYEEI 178 (289)
Q Consensus 116 ~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~-----------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 178 (289)
.-+|.++...|++++|..+|++|..-..... ........|.++..++...+-|+-++...+.+
T Consensus 844 yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lA 923 (950)
T 4gq2_M 844 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA 923 (950)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4579999999999999999999864321110 01112235667777777777777777777777
Q ss_pred HH
Q 022992 179 AR 180 (289)
Q Consensus 179 ~~ 180 (289)
+.
T Consensus 924 I~ 925 (950)
T 4gq2_M 924 DA 925 (950)
T ss_dssp HH
T ss_pred Hh
Confidence 63
No 292
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=50.76 E-value=79 Score=25.23 Aligned_cols=53 Identities=4% Similarity=0.067 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHHHHHh---ccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 022992 126 HNIEQTIVFFEKAADMFQ---NEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI 178 (289)
Q Consensus 126 g~~~~A~~~y~~A~~~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 178 (289)
|+.+.|...|+.|.++.. ...+|...+-+++--.-.|.-+++.++|+.+..++
T Consensus 139 g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~A 194 (227)
T 2o8p_A 139 CSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSL 194 (227)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 446666666666665543 22444445555555555666666666666655555
No 293
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=48.50 E-value=66 Score=31.60 Aligned_cols=65 Identities=15% Similarity=0.202 Sum_probs=39.2
Q ss_pred HHHHHccC-CHHHHHHHHHHHHHHH-----------------HhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 022992 79 AAHCYKKT-SSNEAISCLEQAVNMF-----------------CDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAAD 140 (289)
Q Consensus 79 ~a~~~~~~-~~~~A~~~~~~A~~~~-----------------~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~ 140 (289)
.|.+|... ++++|.++|++|..-. ............|..+..+++..+-++-++++-+.|++
T Consensus 846 ~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 846 KALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp HHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 46666555 8888888887774211 11111112234666777777777777777777777776
Q ss_pred HHh
Q 022992 141 MFQ 143 (289)
Q Consensus 141 ~~~ 143 (289)
...
T Consensus 926 ~~~ 928 (950)
T 4gq2_M 926 SKE 928 (950)
T ss_dssp TCC
T ss_pred hcc
Confidence 543
No 294
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=48.22 E-value=23 Score=23.78 Aligned_cols=18 Identities=17% Similarity=0.418 Sum_probs=11.4
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 022992 126 HNIEQTIVFFEKAADMFQ 143 (289)
Q Consensus 126 g~~~~A~~~y~~A~~~~~ 143 (289)
|+.++|+++|++.+.-+.
T Consensus 33 G~k~~A~~~YkkGi~eL~ 50 (89)
T 3eab_A 33 GQKEQAVEWYKKGIEELE 50 (89)
T ss_dssp SSGGGSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 666666666666665543
No 295
>2jpu_A ORF C02003 protein; solution structure, SSR10, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} PDB: 2q00_A
Probab=48.05 E-value=19 Score=26.10 Aligned_cols=31 Identities=29% Similarity=0.341 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHH
Q 022992 6 ARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAAN 41 (289)
Q Consensus 6 ~~a~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A~~ 41 (289)
+-|+.++.+|+..+.+ ||+-+|.+-+.+|+.
T Consensus 5 ~lAe~yL~EA~ell~k-----GD~vQAsEK~ykAae 35 (129)
T 2jpu_A 5 TSAEVYYEEAEEFLSK-----GDLVQACEKYYKAAE 35 (129)
T ss_dssp CHHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHH
Confidence 4688899999999874 688999888887754
No 296
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=46.11 E-value=89 Score=23.18 Aligned_cols=30 Identities=7% Similarity=0.066 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992 152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQ 181 (289)
Q Consensus 152 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 181 (289)
+..+..+|..|.+.|+..+|-++..++-..
T Consensus 125 ~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 125 ASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 356777777777777777777777777544
No 297
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=45.55 E-value=1e+02 Score=24.71 Aligned_cols=53 Identities=9% Similarity=-0.018 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 022992 89 NEAISCLEQAVNMFCD---IGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADM 141 (289)
Q Consensus 89 ~~A~~~~~~A~~~~~~---~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~ 141 (289)
+.|..+|+.|.++... .-+|-..+-+|+----.|+-++++++|+..-++|.+-
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~ 202 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD 202 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4677788888877653 1345555555555555566678888888877776543
No 298
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=43.56 E-value=1.2e+02 Score=24.41 Aligned_cols=54 Identities=15% Similarity=0.035 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 022992 88 SNEAISCLEQAVNMFCDI---GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADM 141 (289)
Q Consensus 88 ~~~A~~~~~~A~~~~~~~---g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~ 141 (289)
.+.|...|+.|.++.... -+|-..+-+|+----.|+-++++++|+..-++|.+-
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~ 205 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDE 205 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 357888899998887532 355666666665555566779999999887777653
No 299
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=43.09 E-value=54 Score=24.68 Aligned_cols=72 Identities=8% Similarity=-0.090 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhcc-ccccchhhHH-HHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992 156 QKVAQYAAELEQYHKSIEIYEEIARQSLNNN-LLKYGVKGHL-LNAGICQLCKGDVVAITNALERYQDMDPTFS 227 (289)
Q Consensus 156 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~-~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~ 227 (289)
..-+..+...|+|=+|-+.++.+=....+.. ...+-..-.. +.+++.|+..|+...|...+.+++.....+.
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~~ 109 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVP 109 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 3445566677999999999998842211110 0000011122 3446778889999999999999977555554
No 300
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=42.56 E-value=42 Score=22.67 Aligned_cols=67 Identities=13% Similarity=-0.025 Sum_probs=40.1
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992 158 VAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS 227 (289)
Q Consensus 158 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~ 227 (289)
-|..+...|+|=+|-+.++..=....++.. .+-..-....+++.|+..|+. |...+.++......++
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~-~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~~~~ 73 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKATGEER-RLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLEGLP 73 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCCchH-HHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhCC
Confidence 355566779999999999888433211100 000111223446677778887 8888888876444444
No 301
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=42.22 E-value=1.7e+02 Score=25.28 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHccC-------CHHHHHHHHHHHHHHHH
Q 022992 71 EAAQAYVDAAHCYKKT-------SSNEAISCLEQAVNMFC 103 (289)
Q Consensus 71 ~aa~~~~~~a~~~~~~-------~~~~A~~~~~~A~~~~~ 103 (289)
+-+..+.++|.+|.+. ....|..+|++|.-+|.
T Consensus 121 E~a~vLfNlaal~s~~A~~~~r~~lk~A~~~fq~AAG~f~ 160 (392)
T 1zb1_A 121 EKSCTLFNIAVIFTQIARENINEDYKNSIANLTKAFSCFE 160 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence 3444555555554222 56778888888877664
No 302
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=42.15 E-value=1e+02 Score=23.89 Aligned_cols=60 Identities=7% Similarity=-0.014 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHH
Q 022992 109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYH 169 (289)
Q Consensus 109 ~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 169 (289)
.+....+.-+|.++...+++.+|.+++.+|....+..+. .....++.-+.-+...+|++.
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~-~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQ-KNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCH-HHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHH-HHHHHHHHHHHHHHHHcCCCC
Confidence 456778888999999999999999999999998775442 233345666655666677754
No 303
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=41.10 E-value=1.3e+02 Score=24.54 Aligned_cols=53 Identities=9% Similarity=-0.019 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 022992 89 NEAISCLEQAVNMFCDI---GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADM 141 (289)
Q Consensus 89 ~~A~~~~~~A~~~~~~~---g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~ 141 (289)
+.|...|+.|.++.... -+|-..+-+|+----.|+-++++++|+..-++|.+-
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~ 228 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD 228 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56778888888776432 345555555555555566678888888877776553
No 304
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=40.99 E-value=1.8e+02 Score=25.61 Aligned_cols=112 Identities=11% Similarity=0.011 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC---CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC
Q 022992 50 DKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT---SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH 126 (289)
Q Consensus 50 ~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~---~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g 126 (289)
.+-+..-++.+-+....|....---++.++|.+-.-. ....++..|++|+...+..-+-. --.-+.-+|..+...+
T Consensus 239 ~el~~lQq~LLWlLyd~Ghl~~YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~-hvYPYtYlgG~~~R~~ 317 (489)
T 4gq4_A 239 LELLQLQQKLLWLLYDLGHLERYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDE-HIYPYMYLAGYHCRNR 317 (489)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTC-CSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhccchhhcchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccC-cccceeecchHHHHhh
Confidence 3444444555555555553222223455566655332 44567889999988766432111 1234556677777779
Q ss_pred CHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHH
Q 022992 127 NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYA 162 (289)
Q Consensus 127 ~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~ 162 (289)
++.+|+.++-.|......-+..+.-.+++..+-.+.
T Consensus 318 ~~~eAl~~wa~aa~Vi~~YnY~reDeEiYke~~eIa 353 (489)
T 4gq4_A 318 NVREALQAWADTATVIQDYNYCREDEEIYKEFFEVA 353 (489)
T ss_dssp CHHHHHHHHHHHHHHHTTSCCCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhhhhhhhhhcccccchHHHHHHHHHHH
Confidence 999999999999998776543322235555554443
No 305
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=40.89 E-value=1.3e+02 Score=24.29 Aligned_cols=53 Identities=13% Similarity=-0.010 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 022992 89 NEAISCLEQAVNMFCDI---GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADM 141 (289)
Q Consensus 89 ~~A~~~~~~A~~~~~~~---g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~ 141 (289)
+.|...|+.|.++.... -+|-..+-+|+---..|+-++++++|+..-++|.+-
T Consensus 148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~ 203 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDD 203 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56788888888876532 355556656655555566678888888887777654
No 306
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=39.06 E-value=59 Score=23.94 Aligned_cols=34 Identities=24% Similarity=0.437 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 022992 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ 143 (289)
Q Consensus 110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~ 143 (289)
..|..+...|.+|...|+++.|.-+|-+.+.++.
T Consensus 38 rta~~llr~A~~y~~egd~e~AYily~R~~~L~~ 71 (146)
T 2xze_A 38 RSGVEIIRMASIYSEEGNIEHAFILYNKYITLFI 71 (146)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4555677778888888999999999999988874
No 307
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=37.88 E-value=1.3e+02 Score=24.59 Aligned_cols=54 Identities=17% Similarity=0.111 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHh-c----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 022992 88 SNEAISCLEQAVNMFCD-I----GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADM 141 (289)
Q Consensus 88 ~~~A~~~~~~A~~~~~~-~----g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~ 141 (289)
.+.|...|+.|.++... . -+|-..+-+|+----.|+-++++++|+..-++|.+-
T Consensus 168 ~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 168 IKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35788999999988743 2 445555555555445556679999999999998765
No 308
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.26 E-value=92 Score=21.96 Aligned_cols=35 Identities=17% Similarity=0.107 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 022992 28 KYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCH 63 (289)
Q Consensus 28 ~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~ 63 (289)
.|++|..+..+|..+-- .|+.+.|++.|.+.+..+
T Consensus 18 ~h~~AF~~Is~AL~~DE-~g~k~~Al~lYk~GI~eL 52 (116)
T 2dl1_A 18 AYKKAFLFVNKGLNTDE-LGQKEEAKNYYKQGIGHL 52 (116)
T ss_dssp HHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhh-cCCHHHHHHHHHHHHHHH
Confidence 34455555555444433 355555555555555443
No 309
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=34.89 E-value=2.2e+02 Score=24.61 Aligned_cols=109 Identities=8% Similarity=-0.005 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC---CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHH
Q 022992 53 GATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT---SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIE 129 (289)
Q Consensus 53 ~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~---~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~ 129 (289)
+..-++.+-+.-..|....---++-++|.+-... ....++..|.+|+...+.--+... ..=+.-+|.++.+.+++.
T Consensus 235 ~~LQq~LLWLLyD~GhL~rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~H-vYPYtylgGy~yR~~~~r 313 (472)
T 3re2_A 235 SQLQQELLWLLYDMGHIKTYPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHH-IYPYTYLGGYYYRKKKYY 313 (472)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCC-SHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhccchhhCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCC-ccchhhhhhhhhhcchHH
Confidence 3344555555555553222222455566655332 445588888888877654321111 112344566777779999
Q ss_pred HHHHHHHHHHHHHhccCccchHHHHHHHHHHHH
Q 022992 130 QTIVFFEKAADMFQNEEVTTSANQCKQKVAQYA 162 (289)
Q Consensus 130 ~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~ 162 (289)
+|+..+-.|....+.-+..+.-.+++..+-+|-
T Consensus 314 eAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIA 346 (472)
T 3re2_A 314 EAIASWVDAGYVAGKYNYSKDDEEMYKEFHEIA 346 (472)
T ss_dssp HHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Confidence 999999999998877654433335665555443
No 310
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.11 E-value=2.3e+02 Score=24.43 Aligned_cols=128 Identities=9% Similarity=0.141 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-----------CccchHHHHHHHHH
Q 022992 91 AISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE-----------EVTTSANQCKQKVA 159 (289)
Q Consensus 91 A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~-----------~~~~~~~~~~~~l~ 159 (289)
-++.|+.-+.-+...=++-..+.. +..+.....++++|++++++........ ........+...++
T Consensus 58 ~~~ly~~fi~~f~~kin~L~lv~~---~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~ 134 (393)
T 4b4t_O 58 RLRLYDNFVSKFYDKINQLSVVKY---LLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIA 134 (393)
T ss_dssp CHHHHHHHHHHHHHHSCSHHHHHT---THHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHH---HHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHH
Confidence 355666666555544343333322 2334455588999999998775433211 01123445667888
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHH-HHHHHHccCCHHHHHHHHHHHhh
Q 022992 160 QYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLN-AGICQLCKGDVVAITNALERYQD 221 (289)
Q Consensus 160 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~l~~gd~~~A~~~~~~~~~ 221 (289)
.+|...|+.++|..+.+++.................++. .+..|...+++..+....-.++.
T Consensus 135 ~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 135 RTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999999999999999863221111111123333333 35666677888776655555544
No 311
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=34.03 E-value=1.5e+02 Score=22.23 Aligned_cols=63 Identities=8% Similarity=-0.034 Sum_probs=38.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHhcc--CccchHHHHH-HHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992 120 ELYESEHNIEQTIVFFEKAADMFQNE--EVTTSANQCK-QKVAQYAAELEQYHKSIEIYEEIARQS 182 (289)
Q Consensus 120 ~~~~~~g~~~~A~~~y~~A~~~~~~~--~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~a~~~~ 182 (289)
..+.+.|+|=+|-+.++..=.-.... .......-+. .-.|.++...|+...|...+.+++...
T Consensus 40 i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L 105 (161)
T 2ijq_A 40 VRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYF 105 (161)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 33444488888888777664332221 1112222333 345556778899999999999997543
No 312
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=33.82 E-value=78 Score=21.22 Aligned_cols=17 Identities=18% Similarity=0.147 Sum_probs=9.2
Q ss_pred HcCCHHHHHHHHHHHHH
Q 022992 45 LAKSWDKAGATYVKLAN 61 (289)
Q Consensus 45 ~~g~~~~A~~~~~~a~~ 61 (289)
..+++.+|.-.|+++..
T Consensus 65 ~~~ny~ea~~l~~k~~n 81 (106)
T 2vkj_A 65 ETANYGEALVFFEKALN 81 (106)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcchhHHHHHHHHHHc
Confidence 34555555555555543
No 313
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=32.89 E-value=9.2 Score=31.33 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (289)
Q Consensus 111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~ 144 (289)
.|..+..-|.-+...|+|++|+.+|+.|++++..
T Consensus 22 ~Ai~lv~~AVe~D~~g~y~eAl~lY~eaIe~Ll~ 55 (257)
T 2ymb_A 22 AAATVLKRAVELDSESRYPQALVCYQEGIDLLLQ 55 (257)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3444555556666779999999999999998764
No 314
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=32.25 E-value=62 Score=21.66 Aligned_cols=36 Identities=14% Similarity=-0.120 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHH
Q 022992 28 KYEDAADLFDKAANSFKLA--KSWDKAGATYVKLANCH 63 (289)
Q Consensus 28 ~~~~A~~~~~~A~~~~~~~--g~~~~A~~~~~~a~~~~ 63 (289)
.|+.|..+..++..+-... |+.++|+++|.+.+.-.
T Consensus 12 ~h~~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~eL 49 (89)
T 3eab_A 12 FHKQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIEEL 49 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSSSGGGSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHH
Confidence 3556666666655554442 66666666666665544
No 315
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=31.47 E-value=82 Score=25.94 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=23.0
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHH
Q 022992 205 CKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAAS 241 (289)
Q Consensus 205 ~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a 241 (289)
-.||+++|..-++.+.+++|.+. ....+.+.++.+
T Consensus 43 v~G~w~RA~~QL~~~a~l~p~~~--~~a~~yr~lI~a 77 (273)
T 1zbp_A 43 IDGDFERADEQLMQSIKLFPEYL--PGASQLRHLVKA 77 (273)
T ss_dssp HHTCHHHHHHHHHHHHHHCGGGH--HHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhCchhh--HHHHHHHHHHHH
Confidence 46888888888888888777753 223344555543
No 316
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=30.16 E-value=2.9e+02 Score=24.44 Aligned_cols=108 Identities=11% Similarity=0.036 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC---CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHH
Q 022992 54 ATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT---SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQ 130 (289)
Q Consensus 54 ~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~---~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~ 130 (289)
..-++.+=+.-..|....---++-++|.+-... .-..++..|.+|+...+..-+... ..=+.-+|.++...+++.+
T Consensus 258 ~LQq~LLWlLyd~GhL~rYPmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~H-vYPYtYlgGy~yR~~~~re 336 (550)
T 3u84_A 258 QLQQKLLWLLYDLGHLERYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEH-IYPYMYLAGYHCRNRNVRE 336 (550)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCC-SHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhccchhhCchhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCC-ccceeecchhhhhcchHHH
Confidence 333455545445553222222445556554332 334688888888877554321111 1124455667777799999
Q ss_pred HHHHHHHHHHHHhccCccchHHHHHHHHHHHH
Q 022992 131 TIVFFEKAADMFQNEEVTTSANQCKQKVAQYA 162 (289)
Q Consensus 131 A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~ 162 (289)
|+..+-.|....+.-+..+.-.++|..+-+|-
T Consensus 337 Al~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIA 368 (550)
T 3u84_A 337 ALQAWADTATVIQDYNYCREDEEIYKEFFEVA 368 (550)
T ss_dssp HHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcchHHHHHHHHHHH
Confidence 99999999988877654444445555554443
No 317
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=27.59 E-value=1.9e+02 Score=21.45 Aligned_cols=93 Identities=17% Similarity=0.075 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccc
Q 022992 112 ARYYKEIAELYE--SEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLK 189 (289)
Q Consensus 112 a~~l~~la~~~~--~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 189 (289)
-.+|..+|.++. ..|+....+.+|-+.-.. ++.....-++++..|+-++=-+++...+ .+..
T Consensus 59 v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~----------se~vd~ALd~lv~~~KkDqLdki~~~~l----~n~~-- 122 (172)
T 1wy6_A 59 FQVLDKIGSYFDLDKCQNLKSVVECGVINNTL----------NEHVNKALDILVIQGKRDKLEEIGREIL----KNNE-- 122 (172)
T ss_dssp HHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCC----------CHHHHHHHHHHHHTTCHHHHHHHHHHHC------CC--
T ss_pred HHHHHHHhhhcCcHhhhcHHHHHHHHHHhcch----------HHHHHHHHHHHHHhccHhHHHHHHHHHh----ccCC--
Confidence 346777777764 348888888887443111 0223334467788888777666665542 1211
Q ss_pred cchhhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022992 190 YGVKGHLLNAGICQLCKGDVVAITNALERYQD 221 (289)
Q Consensus 190 ~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~ 221 (289)
..+..+.+++.+|-..|+...|.+.+.++++
T Consensus 123 -~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 123 -VSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp -SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 1245678899999999999999999998876
No 318
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=24.10 E-value=1.7e+02 Score=19.61 Aligned_cols=61 Identities=8% Similarity=-0.167 Sum_probs=34.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992 120 ELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS 182 (289)
Q Consensus 120 ~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 182 (289)
..+.+.|+|=+|-+.++..=.-.+.........-+..-.|.++...|+. |...+.++....
T Consensus 9 ~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L 69 (94)
T 2cwy_A 9 LGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARL 69 (94)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHH
T ss_pred HHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHH
Confidence 3444447887777777766443321111122233334445566677887 888898887543
No 319
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=23.79 E-value=1.7e+02 Score=21.36 Aligned_cols=36 Identities=17% Similarity=0.137 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 022992 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE 145 (289)
Q Consensus 110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~ 145 (289)
..|..+...|.+|...||.+.|--+|-+-+.++...
T Consensus 40 rsa~~L~r~A~~y~~EGd~E~AYilymRy~~L~~kI 75 (144)
T 2a9u_A 40 HSALKIFKTAEECRLDRDEERAYVLYMKYVTVYNLI 75 (144)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 455667777889998899999999999998887543
No 320
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=22.76 E-value=2e+02 Score=25.20 Aligned_cols=53 Identities=11% Similarity=0.200 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHhccC--ccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992 128 IEQTIVFFEKAADMFQNEE--VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180 (289)
Q Consensus 128 ~~~A~~~y~~A~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 180 (289)
++.-+.-++.|+...+... ......-+.--++.++...|+|++|+.+.++++.
T Consensus 164 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 3445556666666655321 1233445777899999999999999999999974
No 321
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=21.53 E-value=1.4e+02 Score=22.04 Aligned_cols=45 Identities=11% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 022992 96 EQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAAD 140 (289)
Q Consensus 96 ~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~ 140 (289)
.........+|--...|..+..-|..++..|++.+|...|+.+++
T Consensus 85 ~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 129 (152)
T 4a1g_A 85 HQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQ 129 (152)
T ss_dssp HHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 322
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=21.08 E-value=20 Score=31.74 Aligned_cols=26 Identities=19% Similarity=0.373 Sum_probs=0.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992 119 AELYESEHNIEQTIVFFEKAADMFQN 144 (289)
Q Consensus 119 a~~~~~~g~~~~A~~~y~~A~~~~~~ 144 (289)
|.-+...|+|++|+.+|++|++++..
T Consensus 18 Av~~D~~g~~~eA~~~Y~~a~~~l~~ 43 (444)
T 2zan_A 18 AAQEDKAGNYEEALQLYQHAVQYFLH 43 (444)
T ss_dssp --------------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 34445558888888888888887664
No 323
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=20.91 E-value=2.1e+02 Score=20.85 Aligned_cols=36 Identities=14% Similarity=0.083 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 022992 29 YEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHL 64 (289)
Q Consensus 29 ~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~ 64 (289)
|-..+.-..+.|..|...|+.+.|.-.|.+...+..
T Consensus 36 ylrta~~llr~A~~y~~egd~e~AYily~R~~~L~~ 71 (146)
T 2xze_A 36 YFRSGVEIIRMASIYSEEGNIEHAFILYNKYITLFI 71 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 445555555567777888888888888888887764
No 324
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=20.65 E-value=3.5e+02 Score=23.93 Aligned_cols=62 Identities=13% Similarity=0.140 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HhccC----ccchHHHHHHHHHHHHHHhcCHH
Q 022992 108 LSMAARYYKEIAELYESEHNIEQTIVFFEKAADM-FQNEE----VTTSANQCKQKVAQYAAELEQYH 169 (289)
Q Consensus 108 ~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~-~~~~~----~~~~~~~~~~~l~~~~~~~g~~~ 169 (289)
..+.+..+.-+|.++...++|.+|.+++..|... .+... .......++.-+.-+..-+|++.
T Consensus 216 ~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~~P 282 (455)
T 3t5v_B 216 LDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKMV 282 (455)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCCB
T ss_pred ccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHcCCCC
Confidence 3467888889999999999999999999999998 66532 12223345555555555667653
No 325
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=20.18 E-value=2.5e+02 Score=24.68 Aligned_cols=52 Identities=6% Similarity=0.119 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHhccC--ccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992 129 EQTIVFFEKAADMFQNEE--VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180 (289)
Q Consensus 129 ~~A~~~y~~A~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 180 (289)
+.-+.-++.|+...+... ......-++--++.++...|+|++|+.+.++++.
T Consensus 171 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 171 TEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 455556666666655321 1234445777889999999999999999999974
Done!