Query 022993
Match_columns 289
No_of_seqs 199 out of 1601
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 07:39:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022993.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022993hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03407 Band_7_4 A subgroup of 100.0 4.4E-54 9.5E-59 379.3 32.3 262 12-275 1-262 (262)
2 KOG2620 Prohibitins and stomat 100.0 7.5E-51 1.6E-55 340.9 17.1 282 1-285 1-296 (301)
3 PRK11029 FtsH protease regulat 100.0 2.3E-48 5.1E-53 349.8 31.6 258 4-275 17-327 (334)
4 PRK10930 FtsH protease regulat 100.0 1.2E-47 2.6E-52 353.9 31.9 249 4-263 94-346 (419)
5 TIGR01933 hflK HflK protein. H 100.0 7.2E-47 1.6E-51 333.6 31.0 248 7-264 1-252 (261)
6 TIGR01932 hflC HflC protein. H 100.0 1.6E-46 3.5E-51 338.7 32.3 252 3-264 16-310 (317)
7 cd03405 Band_7_HflC Band_7_Hfl 100.0 7.3E-46 1.6E-50 323.9 29.1 234 7-249 1-241 (242)
8 cd03404 Band_7_HflK Band_7_Hfl 100.0 9E-45 2E-49 321.2 28.6 239 4-250 12-266 (266)
9 COG0330 HflC Membrane protease 100.0 4.9E-41 1.1E-45 301.0 31.2 256 4-266 18-280 (291)
10 cd03403 Band_7_stomatin_like B 100.0 8.5E-40 1.8E-44 280.7 27.5 213 10-261 1-214 (215)
11 cd03401 Band_7_prohibitin Band 100.0 1.7E-37 3.7E-42 262.7 22.5 191 6-206 1-195 (196)
12 cd03406 Band_7_3 A subgroup of 100.0 1.2E-36 2.7E-41 267.6 27.7 194 4-200 2-211 (280)
13 cd03402 Band_7_2 A subgroup of 100.0 6.5E-36 1.4E-40 255.8 20.6 170 6-180 1-179 (219)
14 KOG2621 Prohibitins and stomat 100.0 1.4E-35 3E-40 251.9 14.3 221 3-264 51-274 (288)
15 smart00244 PHB prohibitin homo 100.0 1.1E-30 2.4E-35 213.5 18.9 156 5-164 1-159 (160)
16 PF01145 Band_7: SPFH domain / 100.0 6E-31 1.3E-35 218.8 15.3 170 8-181 1-178 (179)
17 KOG3090 Prohibitin-like protei 99.9 2.4E-26 5.3E-31 189.2 18.5 235 3-264 34-274 (290)
18 KOG3083 Prohibitin [Posttransl 99.9 2.7E-25 6E-30 182.8 10.5 232 5-265 25-265 (271)
19 cd03408 Band_7_5 A subgroup of 99.9 1.5E-22 3.2E-27 172.7 13.7 158 4-164 13-206 (207)
20 KOG2962 Prohibitin-related mem 99.9 1E-19 2.2E-24 150.9 21.6 192 4-198 20-227 (322)
21 KOG2668 Flotillins [Intracellu 99.8 2.2E-18 4.8E-23 150.6 23.6 157 7-167 2-170 (428)
22 cd03400 Band_7_1 A subgroup of 99.8 1.6E-19 3.4E-24 141.7 11.7 119 46-164 2-123 (124)
23 cd03399 Band_7_flotillin Band_ 99.8 3.3E-18 7.2E-23 134.9 10.8 116 47-162 2-125 (128)
24 COG2268 Uncharacterized protei 99.7 5.1E-16 1.1E-20 145.5 22.1 190 6-197 33-247 (548)
25 cd02106 Band_7 The band 7 doma 99.7 2.5E-15 5.3E-20 116.2 13.6 111 52-164 7-120 (121)
26 PF13421 Band_7_1: SPFH domain 99.5 9.6E-13 2.1E-17 112.0 17.7 156 6-165 15-207 (211)
27 COG4260 Membrane protease subu 99.1 5.8E-09 1.3E-13 89.8 14.9 158 6-165 40-234 (345)
28 PTZ00491 major vault protein; 98.9 2.3E-07 5E-12 91.3 21.9 153 7-162 464-650 (850)
29 PF12127 YdfA_immunity: SigmaW 97.4 0.0041 8.8E-08 54.1 12.3 104 49-158 122-226 (316)
30 cd03405 Band_7_HflC Band_7_Hfl 97.3 0.00095 2.1E-08 58.1 7.7 44 180-223 166-209 (242)
31 PRK13665 hypothetical protein; 96.9 0.0085 1.8E-07 51.9 9.8 105 48-159 126-232 (316)
32 TIGR01932 hflC HflC protein. H 96.7 0.0079 1.7E-07 54.6 8.4 41 174-214 237-277 (317)
33 PRK11029 FtsH protease regulat 96.6 0.011 2.4E-07 53.9 8.7 72 145-223 202-274 (334)
34 cd03404 Band_7_HflK Band_7_Hfl 96.5 0.027 5.9E-07 49.7 10.3 73 145-224 161-234 (266)
35 cd03407 Band_7_4 A subgroup of 96.4 0.012 2.7E-07 51.9 7.7 51 175-225 152-202 (262)
36 TIGR01933 hflK HflK protein. H 96.4 0.023 4.9E-07 50.1 9.0 78 137-215 136-220 (261)
37 PF11978 MVP_shoulder: Shoulde 96.2 0.037 8.1E-07 42.0 8.0 96 59-154 10-117 (118)
38 KOG2620 Prohibitins and stomat 95.6 0.027 5.9E-07 48.8 5.4 50 165-214 178-227 (301)
39 COG2268 Uncharacterized protei 95.2 0.48 1E-05 45.8 13.1 75 189-265 411-493 (548)
40 PRK10930 FtsH protease regulat 95.0 0.19 4E-06 47.4 9.5 36 182-217 261-296 (419)
41 COG1580 FliL Flagellar basal b 94.3 0.49 1.1E-05 38.4 9.4 80 65-152 76-157 (159)
42 COG0330 HflC Membrane protease 93.1 0.45 9.8E-06 42.5 7.9 50 174-224 181-230 (291)
43 cd03401 Band_7_prohibitin Band 89.2 1.3 2.8E-05 36.9 6.4 25 193-217 171-195 (196)
44 PRK01558 V-type ATP synthase s 88.5 3 6.4E-05 35.2 8.2 49 158-206 9-59 (198)
45 PRK01558 V-type ATP synthase s 87.5 8.1 0.00018 32.5 10.2 40 176-215 18-57 (198)
46 PRK01005 V-type ATP synthase s 87.3 7 0.00015 33.2 9.6 42 170-211 28-69 (207)
47 PLN03086 PRLI-interacting fact 86.9 1.6 3.5E-05 42.6 6.2 23 237-262 76-98 (567)
48 COG4864 Uncharacterized protei 86.8 11 0.00023 32.2 10.2 92 61-159 139-231 (328)
49 KOG2668 Flotillins [Intracellu 86.7 2.6 5.7E-05 38.3 6.9 84 175-263 295-384 (428)
50 PRK01005 V-type ATP synthase s 84.3 7.8 0.00017 32.9 8.5 28 174-201 43-70 (207)
51 cd03403 Band_7_stomatin_like B 84.0 2.5 5.4E-05 35.8 5.5 27 188-214 155-181 (215)
52 PRK06654 fliL flagellar basal 83.5 14 0.00029 30.7 9.3 84 59-152 92-177 (181)
53 PRK05697 flagellar basal body- 82.8 9.4 0.0002 30.2 7.9 54 98-151 77-134 (137)
54 PRK07021 fliL flagellar basal 82.7 14 0.00031 29.9 9.2 54 98-151 102-159 (162)
55 PF03748 FliL: Flagellar basal 82.6 16 0.00035 26.5 10.8 52 98-151 43-96 (99)
56 PRK02292 V-type ATP synthase s 81.9 9.9 0.00022 31.5 8.2 38 161-198 6-43 (188)
57 KOG3083 Prohibitin [Posttransl 81.8 1.9 4.2E-05 36.7 3.8 31 163-193 199-229 (271)
58 PRK07718 fliL flagellar basal 81.2 4.9 0.00011 32.0 5.8 51 99-151 87-139 (142)
59 PRK12785 fliL flagellar basal 79.6 14 0.0003 30.2 8.1 52 98-151 110-163 (166)
60 PRK08404 V-type ATP synthase s 79.2 24 0.00052 26.4 9.2 35 160-194 4-38 (103)
61 TIGR01147 V_ATP_synt_G vacuola 79.2 16 0.00035 27.9 7.7 40 160-199 7-46 (113)
62 PRK04057 30S ribosomal protein 78.2 22 0.00048 30.1 9.0 83 58-149 100-184 (203)
63 PRK06568 F0F1 ATP synthase sub 77.9 25 0.00055 28.4 8.9 12 236-247 129-140 (154)
64 PRK08404 V-type ATP synthase s 77.4 18 0.00039 27.1 7.5 28 178-205 37-64 (103)
65 PRK05696 fliL flagellar basal 76.9 30 0.00065 28.3 9.4 55 97-151 109-167 (170)
66 PRK08455 fliL flagellar basal 76.5 31 0.00067 28.7 9.4 53 97-151 125-179 (182)
67 COG2811 NtpF Archaeal/vacuolar 75.8 32 0.00069 26.0 9.9 42 160-201 8-49 (108)
68 PF03179 V-ATPase_G: Vacuolar 74.8 12 0.00026 27.9 6.0 42 161-202 6-47 (105)
69 KOG3090 Prohibitin-like protei 72.5 9.8 0.00021 32.6 5.4 64 140-205 178-241 (290)
70 PRK06231 F0F1 ATP synthase sub 72.1 60 0.0013 27.5 10.6 8 114-121 73-80 (205)
71 TIGR01147 V_ATP_synt_G vacuola 71.0 44 0.00096 25.5 8.4 39 172-210 8-46 (113)
72 PF03179 V-ATPase_G: Vacuolar 69.4 26 0.00056 26.1 6.8 42 174-215 8-49 (105)
73 PRK09098 type III secretion sy 68.8 27 0.00058 30.3 7.6 36 171-206 41-76 (233)
74 PRK08475 F0F1 ATP synthase sub 68.7 48 0.001 27.0 8.7 34 174-207 97-130 (167)
75 CHL00118 atpG ATP synthase CF0 68.6 50 0.0011 26.5 8.7 6 115-120 48-53 (156)
76 PRK08475 F0F1 ATP synthase sub 68.2 64 0.0014 26.3 9.8 9 113-121 46-54 (167)
77 PRK06231 F0F1 ATP synthase sub 67.8 75 0.0016 26.9 10.6 9 242-250 172-180 (205)
78 PRK13454 F0F1 ATP synthase sub 65.8 76 0.0016 26.2 10.5 11 113-123 55-65 (181)
79 PF06188 HrpE: HrpE/YscL/FliH 64.6 30 0.00066 28.9 6.9 28 171-198 32-59 (191)
80 PRK08476 F0F1 ATP synthase sub 64.0 70 0.0015 25.2 8.7 9 113-121 31-39 (141)
81 PRK13461 F0F1 ATP synthase sub 63.7 69 0.0015 25.6 8.7 9 113-121 29-37 (159)
82 PRK14473 F0F1 ATP synthase sub 63.6 77 0.0017 25.5 10.6 19 112-130 31-50 (164)
83 PRK14471 F0F1 ATP synthase sub 63.6 77 0.0017 25.5 10.3 16 113-128 32-48 (164)
84 PF01015 Ribosomal_S3Ae: Ribos 63.3 39 0.00084 28.4 7.3 79 59-147 107-188 (194)
85 PRK07352 F0F1 ATP synthase sub 63.1 82 0.0018 25.7 10.6 22 109-130 39-61 (174)
86 COG2811 NtpF Archaeal/vacuolar 63.0 36 0.00077 25.7 6.2 29 166-194 25-53 (108)
87 COG1890 RPS1A Ribosomal protei 62.8 77 0.0017 26.9 8.8 85 54-149 104-192 (214)
88 PRK13455 F0F1 ATP synthase sub 62.7 87 0.0019 25.8 9.9 14 267-280 168-181 (184)
89 PRK09098 type III secretion sy 62.4 29 0.00064 30.0 6.6 25 172-196 53-77 (233)
90 TIGR02926 AhaH ATP synthase ar 61.9 48 0.001 23.6 6.7 27 168-194 8-34 (85)
91 TIGR03321 alt_F1F0_F0_B altern 61.7 1.1E+02 0.0024 26.6 10.6 37 173-209 79-115 (246)
92 PRK09173 F0F1 ATP synthase sub 61.6 83 0.0018 25.2 9.8 30 175-204 63-92 (159)
93 PRK13460 F0F1 ATP synthase sub 61.0 90 0.002 25.4 9.8 18 112-129 39-57 (173)
94 CHL00019 atpF ATP synthase CF0 61.0 77 0.0017 26.1 8.7 23 109-131 44-67 (184)
95 cd03406 Band_7_3 A subgroup of 60.8 18 0.00039 32.3 5.1 74 127-208 125-208 (280)
96 PRK09174 F0F1 ATP synthase sub 60.5 1E+02 0.0023 26.0 10.6 18 113-130 77-95 (204)
97 PRK06568 F0F1 ATP synthase sub 60.1 91 0.002 25.2 9.8 17 178-194 68-84 (154)
98 PRK13428 F0F1 ATP synthase sub 59.9 1.6E+02 0.0034 28.2 11.6 15 236-250 144-158 (445)
99 TIGR03321 alt_F1F0_F0_B altern 59.9 73 0.0016 27.7 8.7 34 168-201 85-118 (246)
100 PRK13428 F0F1 ATP synthase sub 59.8 1.1E+02 0.0024 29.2 10.6 18 113-130 25-43 (445)
101 CHL00118 atpG ATP synthase CF0 59.8 89 0.0019 25.0 10.5 16 186-201 83-98 (156)
102 PRK14473 F0F1 ATP synthase sub 59.8 91 0.002 25.1 10.3 8 243-250 133-140 (164)
103 TIGR01144 ATP_synt_b ATP synth 58.2 89 0.0019 24.5 10.1 6 244-249 121-126 (147)
104 PRK14471 F0F1 ATP synthase sub 58.0 98 0.0021 24.9 10.6 9 242-250 132-140 (164)
105 PRK14474 F0F1 ATP synthase sub 55.7 1.4E+02 0.0031 26.1 10.6 35 174-208 80-114 (250)
106 PRK05759 F0F1 ATP synthase sub 53.9 1.1E+02 0.0024 24.2 8.7 7 114-120 29-35 (156)
107 PRK14472 F0F1 ATP synthase sub 53.6 1.2E+02 0.0026 24.7 10.6 17 112-128 41-58 (175)
108 PRK14472 F0F1 ATP synthase sub 53.4 1.2E+02 0.0027 24.7 9.8 9 242-250 142-150 (175)
109 PRK14475 F0F1 ATP synthase sub 53.1 1.2E+02 0.0026 24.5 10.5 16 114-129 35-51 (167)
110 PRK06669 fliH flagellar assemb 51.4 1.5E+02 0.0034 26.1 9.6 28 173-200 92-119 (281)
111 PRK13453 F0F1 ATP synthase sub 51.3 1.3E+02 0.0029 24.5 9.8 18 112-129 41-59 (173)
112 PRK14475 F0F1 ATP synthase sub 49.6 1.4E+02 0.003 24.2 9.8 9 242-250 134-142 (167)
113 PRK13453 F0F1 ATP synthase sub 49.3 1.4E+02 0.0031 24.3 10.6 8 243-250 143-150 (173)
114 PRK03963 V-type ATP synthase s 49.1 1.5E+02 0.0033 24.5 11.0 10 258-267 122-131 (198)
115 PRK13460 F0F1 ATP synthase sub 48.5 1.5E+02 0.0032 24.2 10.6 7 269-275 159-165 (173)
116 PTZ00491 major vault protein; 47.8 90 0.0019 32.2 8.0 10 71-80 561-570 (850)
117 PRK07353 F0F1 ATP synthase sub 46.9 1.3E+02 0.0029 23.2 8.7 7 114-120 30-36 (140)
118 PRK09173 F0F1 ATP synthase sub 46.6 1.5E+02 0.0032 23.7 10.6 22 185-206 62-83 (159)
119 PF06188 HrpE: HrpE/YscL/FliH 45.1 1.8E+02 0.0039 24.2 11.2 27 166-192 38-64 (191)
120 TIGR03825 FliH_bacil flagellar 42.5 1.6E+02 0.0034 25.7 8.1 17 178-194 49-65 (255)
121 PRK14474 F0F1 ATP synthase sub 42.5 2.3E+02 0.005 24.7 13.3 26 173-198 90-115 (250)
122 PRK15322 invasion protein OrgB 41.3 2.2E+02 0.0048 24.1 12.8 29 173-201 16-44 (210)
123 PRK13461 F0F1 ATP synthase sub 39.2 2E+02 0.0043 23.0 10.6 9 242-250 129-137 (159)
124 PRK06569 F0F1 ATP synthase sub 38.4 2.1E+02 0.0046 23.1 9.2 9 186-194 71-79 (155)
125 KOG0742 AAA+-type ATPase [Post 38.4 3.3E+02 0.0072 26.1 9.6 21 185-205 208-228 (630)
126 PRK07353 F0F1 ATP synthase sub 38.0 1.9E+02 0.0041 22.4 10.6 15 186-200 66-80 (140)
127 PTZ00399 cysteinyl-tRNA-synthe 36.8 3.7E+02 0.0079 27.2 10.5 36 129-164 520-560 (651)
128 PRK05759 F0F1 ATP synthase sub 36.3 2.1E+02 0.0046 22.5 10.6 7 244-250 130-136 (156)
129 COG1390 NtpE Archaeal/vacuolar 34.7 2.8E+02 0.006 23.3 11.2 9 241-249 109-117 (194)
130 PRK13455 F0F1 ATP synthase sub 34.2 2.6E+02 0.0057 22.9 10.6 18 113-130 51-69 (184)
131 PF11740 KfrA_N: Plasmid repli 33.4 2.1E+02 0.0045 21.4 12.1 20 147-166 53-72 (120)
132 COG4396 Mu-like prophage host- 32.7 81 0.0017 24.9 4.0 71 61-145 81-155 (170)
133 PRK06669 fliH flagellar assemb 32.6 2.4E+02 0.0053 24.9 7.8 36 173-208 81-116 (281)
134 COG1464 NlpA ABC-type metal io 31.4 96 0.0021 27.4 4.8 39 235-276 111-149 (268)
135 TIGR03825 FliH_bacil flagellar 30.9 1.6E+02 0.0035 25.7 6.3 16 169-184 51-66 (255)
136 PRK15354 type III secretion sy 30.0 3.5E+02 0.0076 23.1 9.5 42 216-261 119-160 (224)
137 PF06635 NolV: Nodulation prot 29.8 1E+02 0.0023 26.1 4.6 34 92-125 90-125 (207)
138 COG0711 AtpF F0F1-type ATP syn 29.1 3.1E+02 0.0066 22.1 10.5 7 114-120 31-37 (161)
139 PHA02571 a-gt.4 hypothetical p 28.3 2.6E+02 0.0057 21.1 10.9 72 174-249 25-96 (109)
140 KOG1772 Vacuolar H+-ATPase V1 28.2 2.6E+02 0.0057 21.0 6.9 38 161-198 8-45 (108)
141 PF05103 DivIVA: DivIVA protei 27.3 21 0.00045 27.5 0.0 20 182-201 87-106 (131)
142 PRK15322 invasion protein OrgB 26.8 2.5E+02 0.0055 23.8 6.3 42 220-268 84-125 (210)
143 PRK03963 V-type ATP synthase s 25.9 3.8E+02 0.0082 22.1 15.3 32 243-275 111-142 (198)
144 KOG1749 40S ribosomal protein 25.8 78 0.0017 24.3 2.8 31 6-36 90-122 (143)
145 KOG0994 Extracellular matrix g 25.6 8E+02 0.017 26.9 10.6 20 187-206 1446-1465(1758)
146 PRK12613 galactose-6-phosphate 23.8 55 0.0012 26.0 1.8 31 125-155 11-41 (141)
147 PRK06328 type III secretion sy 23.5 2.8E+02 0.0061 23.7 6.3 26 242-270 121-146 (223)
148 PF03780 Asp23: Asp23 family; 23.0 1.2E+02 0.0027 22.1 3.6 23 126-148 79-102 (108)
149 TIGR02926 AhaH ATP synthase ar 22.7 2.8E+02 0.0062 19.5 8.7 14 188-201 43-56 (85)
150 KOG0742 AAA+-type ATPase [Post 22.3 4E+02 0.0087 25.6 7.3 10 241-250 255-264 (630)
151 PTZ00321 ribosomal protein L11 21.3 4.4E+02 0.0096 23.9 7.1 41 107-147 144-195 (342)
No 1
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=4.4e-54 Score=379.32 Aligned_cols=262 Identities=65% Similarity=0.947 Sum_probs=248.7
Q ss_pred CCeEEEEEecCeeeeeeCCcceeecCcccceeeEeeeeeEEEeecCCccccCCCcEEEEEEEEEEEEcccchhhhhcccc
Q 022993 12 QSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKASDAFYKLS 91 (289)
Q Consensus 12 ~g~~~Vv~~fGk~~~~~~pG~h~~~P~~~~~v~~~~~~r~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~ 91 (289)
+|++|||++||+++++++||+||++||+ +++...++++.++++++.+++|+|++.|.|+++++|||.||.+.+++|++.
T Consensus 1 q~~~~Vv~rfGk~~~~l~pGlhf~~P~i-~~v~~~~~~r~~~~~~~~~~lTkD~~~V~vd~~v~yrI~d~~~~~~~~~~~ 79 (262)
T cd03407 1 QSQVAIIERFGKFFKVAWPGCHFVIPLV-ETVAGRLSLRVQQLDVRVETKTKDNVFVTVVGQIQYRVSEENATDAFYKLG 79 (262)
T ss_pred CcEEEEEeecCcccccCCCCeEEEeccc-cceeeEEeeeEEEecCCCceEcCCCCEEEEEEEEEEEECCcHHHHHHHHcC
Confidence 5899999999999999999999999996 565457899999999998899999999999999999999987778999999
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCHHHHHhhHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCChHHHHHHHHHHHHHHHH
Q 022993 92 NTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLR 171 (289)
Q Consensus 92 ~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~~~v~~~l~~~l~~~Gi~V~~v~I~~i~~p~~v~~a~~~~~~A~~~~ 171 (289)
|+...|.+.+++++|+++|++++++++++|+.|+..+.+.+++.+++|||.|++|.|++|+||+++.++|++++.|+|++
T Consensus 80 ~~~~~l~~~~~s~lR~vig~~~l~eil~~R~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~~p~~v~~A~~~~~~A~~~~ 159 (262)
T cd03407 80 NPEEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQRQR 159 (262)
T ss_pred CHHHHHHHHHHHHHHHHhcCccHHHHHhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHHHHHHHHHhc
Q 022993 172 LAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGA 251 (289)
Q Consensus 172 ~a~~~~Ae~~~~~~i~~A~aeaea~~~~Aea~a~a~~~~aea~a~~~~~~~~a~~~~~~~~~~~~~l~~~~le~l~~~~~ 251 (289)
++.+.+||+++...+..|+|++++.+++|+|+|++.++.|+|+++++..+.++++..++++++++++..+|+|+|+++++
T Consensus 160 ~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~e~~~~~~~ 239 (262)
T cd03407 160 VAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGLRESILSLADAVPGMTAKDVMDLLLVNQYFDTLKAYGR 239 (262)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999998876777888999999999999999997
Q ss_pred cCCCcEEEecCCCCcHHHHHHHHH
Q 022993 252 SSKTNSVFIPHGPGAVKDIASQIR 275 (289)
Q Consensus 252 ~~~~~~i~lp~~~~~~~~~~~~~~ 275 (289)
+++ +++++|.+++++.+++.+|+
T Consensus 240 ~~~-kviv~p~~~~~~~~~~~~~~ 262 (262)
T cd03407 240 SSS-TVVFRPHGPGGAQDIYAQIR 262 (262)
T ss_pred CCC-CEEEecCCCccHHHHHHhcC
Confidence 655 89999999999999998863
No 2
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=100.00 E-value=7.5e-51 Score=340.89 Aligned_cols=282 Identities=42% Similarity=0.620 Sum_probs=258.5
Q ss_pred CCCceeEEE--ecCCeEEEEEecCeeeeeeCCcceeecCcccceeeEeeeeeEEEeec-CCccccCCCcEEEEEEEEEEE
Q 022993 1 MGQALGCIQ--VDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDV-RCETKTKDNVFVNVVASVQYR 77 (289)
Q Consensus 1 ~~~~~~~~~--V~~g~~~Vv~~fGk~~~~~~pG~h~~~P~~~~~v~~~~~~r~~~~~~-~~~v~T~D~~~v~v~~~v~yr 77 (289)
||-.+||.+ ||+.+++|+.||||+.++++||+||.+|++ +++.+..+++...... .++..|+||+.+.++++++||
T Consensus 1 ~g~~~n~vi~~VpQ~~a~VvER~GkF~~iLePG~~fl~p~~-d~i~~v~~lkeia~~~~~q~aiTkDNV~v~idgvly~r 79 (301)
T KOG2620|consen 1 MGNATNTVIRFVPQQEAAVVERFGKFHRILEPGLHFLPPVI-DKIAYVHSLKEIAILDPKQEAITKDNVFVQIDGVLYYR 79 (301)
T ss_pred CCCcceeeEEeechhHhHHHHHhhhhhhhcCCcceechhhh-hhHHHHHHHHHHhhcccccceeecccEEEEEEEEEEEE
Confidence 677788877 999999999999999999999999999997 4555666665554444 459999999999999999999
Q ss_pred EcccchhhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHhhHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCChHH
Q 022993 78 ALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHV 157 (289)
Q Consensus 78 I~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~~~v~~~l~~~l~~~Gi~V~~v~I~~i~~p~~v 157 (289)
|.||...+++|+++||+.+|.+++++.+|+.+|++++|.++..|+.++..|.+.|++.+..||+.+.+..|+||.||+.+
T Consensus 80 v~dp~~~dAsYgvenp~~aI~qlaqttmRsevgkltLD~vFeer~~ln~sI~eainkA~~~wG~~clr~eIrDI~pp~~V 159 (301)
T KOG2620|consen 80 VVDPYADDASYGVENPEYAIQQLAQTTMRSEVGKLTLDKVFEERNSLNKSIVEAINKAMEAWGYECLRYEIRDIEPPPSV 159 (301)
T ss_pred EecccccccccccCCHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCHHH
Confidence 99986666999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCC----------
Q 022993 158 KRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPG---------- 227 (289)
Q Consensus 158 ~~a~~~~~~A~~~~~a~~~~Ae~~~~~~i~~A~aeaea~~~~Aea~a~a~~~~aea~a~~~~~~~~a~~~---------- 227 (289)
.+||+.+..|+|.+++++.++|++++.+|.+|+|+++++++..+|.+..+...+.|+++++..++++.++
T Consensus 160 ~~AM~~q~~AeR~krAailesEger~~~InrAEGek~s~iL~seg~~~qr~n~a~Gea~ail~~A~a~a~~~a~~~~~l~ 239 (301)
T KOG2620|consen 160 KRAMNMQNEAERMKRAAILESEGERIAQINRAEGEKESKILASEGIARQRQNIADGEAEAILAFADAVAGTSAKLVMDLK 239 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhhcchhhhHHhhhHHHHHHHHHHHhhHHHHHHHHhhcccchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999876553
Q ss_pred -CCcchhhhHHHHHHHHHHHHHHhccCCCcEEEecCCCCcHHHHHHHHHHHHhhhhhcc
Q 022993 228 -TSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANATT 285 (289)
Q Consensus 228 -~~~~~~~~~~l~~~~le~l~~~~~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~~~~ 285 (289)
.++.+++.++...+|+.+..++++ .++++|||.++|++.+|.+|.+.++.+.+.++
T Consensus 240 ~~~g~~aasl~~a~qyIgaf~~lak--~sntv~lP~~pg~v~~mvaQa~~~~~~~s~~~ 296 (301)
T KOG2620|consen 240 QEGGVEAASLFDAEQYIGAFGKLAK--KSNTVFLPHGPGDVRDMVAQALNGYKQLSNAT 296 (301)
T ss_pred HhcchhhHHHHHHHHHHHhhhhhcc--cCceEEecCCCCcHHHHHHHHHHHHHhhhccC
Confidence 235566788889999999999974 67899999999999999999999999988765
No 3
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=100.00 E-value=2.3e-48 Score=349.76 Aligned_cols=258 Identities=17% Similarity=0.219 Sum_probs=229.8
Q ss_pred ceeEEEecCCeEEEEEecCeeee-------eeCCcceeecCcccceeeEeeeeeEEEeecCC-ccccCCCcEEEEEEEEE
Q 022993 4 ALGCIQVDQSTVAIKETFGKFDD-------VLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQ 75 (289)
Q Consensus 4 ~~~~~~V~~g~~~Vv~~fGk~~~-------~~~pG~h~~~P~~~~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~ 75 (289)
++||++|++||+||+++||++.+ +++||+||++||+ +++ ..+|+|.+.++.+. .++|+|++.|.||++++
T Consensus 17 ~~s~~iV~ege~gVV~rFGk~~~~~~~~~~~l~PGLhf~iPfi-d~V-~~vdvR~q~~d~~~~~vlT~D~~~V~VD~~V~ 94 (334)
T PRK11029 17 YMSVFVVKEGERGIVLRFGKVLRDDDNKPLVYAPGLHFKIPFI-ETV-KMLDARIQTMDNQADRFVTKEKKDLIVDSYIK 94 (334)
T ss_pred HheEEEECCCeEEEEEECCceeccccccccccCCceEEEcCCc-eEE-EEEeeEEEEeeCCCceEEcCCCCEEEEEEEEE
Confidence 57999999999999999999986 4899999999996 566 58999999999985 89999999999999999
Q ss_pred EEEcccchhhhhccc--cC---hHHHHHHHHHHHHHHHcCCCCHHHHHh-hHHHHHHHHHHHHHHH--------------
Q 022993 76 YRALAEKASDAFYKL--SN---TRSQIQAYVFDVIRASVPKLDLDATFE-QKNDIAKAVEEELEKA-------------- 135 (289)
Q Consensus 76 yrI~d~~~~~~~~~~--~~---~~~~l~~~~~~~lr~~i~~~~~~~i~~-~R~~i~~~v~~~l~~~-------------- 135 (289)
|||.|| .++++.. .| +...|.+.+++++|+++|+++++++++ +|++|..++++.+++.
T Consensus 95 yrI~Dp--~~~~~~~~~~n~~~a~~~l~~~v~salR~viG~~tldei~~~~R~~i~~~v~~~l~~~~~~~~~~~~~~~~~ 172 (334)
T PRK11029 95 WRISDF--SRYYLATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLDVRDALNSGSAGTEDEVATPAAD 172 (334)
T ss_pred EEECCH--HHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHcccCHHHHHHhhHHHHHHHHHHHHHHhhhcccccccccccc
Confidence 999995 4555432 23 446789999999999999999999998 5999999999999954
Q ss_pred -------------------------hcccCeEEEEEEEeecCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022993 136 -------------------------MSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAE 190 (289)
Q Consensus 136 -------------------------l~~~Gi~V~~v~I~~i~~p~~v~~a~~~~~~A~~~~~a~~~~Ae~~~~~~i~~A~ 190 (289)
+.+|||+|.+|.|++++||+++.++|++++.|+|++++++.+|||++.+..++++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~~a~~~~aege~~a~~~~a~ 252 (334)
T PRK11029 173 DAIASAAERVEAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTEVSDAIYNRMRAEREAVARRHRSQGQEEAEKLRAT 252 (334)
T ss_pred cccccchhhcccccccccccccccccccCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHHHHHHHHHhccCCCcEEEecCCCCcHHHH
Q 022993 191 GEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDI 270 (289)
Q Consensus 191 aeaea~~~~Aea~a~a~~~~aea~a~~~~~~~~a~~~~~~~~~~~~~l~~~~le~l~~~~~~~~~~~i~lp~~~~~~~~~ 270 (289)
|+.++.++.|+|++++.+++|+|++++++.++++|.+ +| .++.+++||++|+++++. +++++++|++. ++
T Consensus 253 A~~e~~~~~AeA~~~a~i~~aegeA~a~~~~~~a~~~--~p---~~~~~~~~lea~~~~~~~-~~~~~vl~~~~----~~ 322 (334)
T PRK11029 253 ADYEVTRTLAEAERQGRIMRGEGDAEAAKLFADAFSQ--DP---DFYAFIRSLRAYENSFSG-NQDVMVLSPDS----DF 322 (334)
T ss_pred HHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CH---HHHHHHHHHHHHHHHhcC-CCcEEEECCCh----HH
Confidence 9999999999999999999999999999999999973 34 478889999999999963 45789999884 55
Q ss_pred HHHHH
Q 022993 271 ASQIR 275 (289)
Q Consensus 271 ~~~~~ 275 (289)
+..|.
T Consensus 323 ~~~l~ 327 (334)
T PRK11029 323 FRYMK 327 (334)
T ss_pred HHHhh
Confidence 55553
No 4
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=100.00 E-value=1.2e-47 Score=353.90 Aligned_cols=249 Identities=20% Similarity=0.283 Sum_probs=224.5
Q ss_pred ceeEEEecCCeEEEEEecCeeeeeeCCcceeecCcccceeeEeeeeeEEEeec-CCccccCCCcEEEEEEEEEEEEcccc
Q 022993 4 ALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDV-RCETKTKDNVFVNVVASVQYRALAEK 82 (289)
Q Consensus 4 ~~~~~~V~~g~~~Vv~~fGk~~~~~~pG~h~~~P~~~~~v~~~~~~r~~~~~~-~~~v~T~D~~~v~v~~~v~yrI~d~~ 82 (289)
++|||+|+++|+|||++||++.++++||+||++||+ +++ +.++++.+.... +..++|+|++.|.|+++|+|||.|
T Consensus 94 ~sg~yiV~e~E~gVV~rFGk~~~~l~PGLhfk~PfI-d~V-~~vdv~~~~~~~~~~~mLT~D~n~V~Vd~~VqYrI~D-- 169 (419)
T PRK10930 94 ASGFYTIKEAERGVVTRFGKFSHLVEPGLNWKPTFI-DEV-KPVNVEAVRELAASGVMLTSDENVVRVEMNVQYRVTD-- 169 (419)
T ss_pred HheEEEECCCeEEEEEECCcCcceeCCceEEecCce-EEE-EEEEeEEEEEccCcceeECCCCCEEEEEEEEEEEECC--
Confidence 579999999999999999999999999999999996 566 468877654333 348999999999999999999999
Q ss_pred hhhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHhh-HHHHHHHHHHHHHHHhccc--CeEEEEEEEeecCCChHHHH
Q 022993 83 ASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ-KNDIAKAVEEELEKAMSHY--GYEIVQTLIVDIEPDEHVKR 159 (289)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~-R~~i~~~v~~~l~~~l~~~--Gi~V~~v~I~~i~~p~~v~~ 159 (289)
+.+++|++.+++..|.+.++++||+++|++++++++++ |++|...+++.|++.++.| ||+|++|+|+++.||+++++
T Consensus 170 p~~~lf~v~~~~~~L~~~~~SAlR~vIG~~tldevLt~~R~~I~~~i~~~l~e~l~~y~~GI~V~~V~I~di~pP~eV~~ 249 (419)
T PRK10930 170 PEKYLFSVTSPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRPYDMGITLLDVNFQAARPPEEVKA 249 (419)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHccCCHHHHhhccHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEeecCCCHHHHH
Confidence 46789999999999999999999999999999999986 9999999999999999997 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhHHHH
Q 022993 160 AMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLV 239 (289)
Q Consensus 160 a~~~~~~A~~~~~a~~~~Ae~~~~~~i~~A~aeaea~~~~Aea~a~a~~~~aea~a~~~~~~~~a~~~~~~~~~~~~~l~ 239 (289)
||++++.|++++++.+.+||++++..+.+|+++|++.+.+|+|++++.+++|+|+++++..+..+|. ..|++++..|
T Consensus 250 Af~~v~~Are~~~~~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~rF~~i~~~Y~--kaP~vtr~Rl- 326 (419)
T PRK10930 250 AFDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVARFAKLLPEYK--AAPEITRERL- 326 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh--hCHHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999888888886 4676655544
Q ss_pred HHHHHHHHHHhccCCCcEEEecCC
Q 022993 240 TQYFDTMKEIGASSKTNSVFIPHG 263 (289)
Q Consensus 240 ~~~le~l~~~~~~~~~~~i~lp~~ 263 (289)
|||+|+++++ +.+.++++.+
T Consensus 327 --Yletme~vl~--~~~kvivd~~ 346 (419)
T PRK10930 327 --YIETMEKVLG--HTRKVLVNDK 346 (419)
T ss_pred --HHHHHHHHHc--cCCEEEEeCC
Confidence 9999999996 3344555544
No 5
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=100.00 E-value=7.2e-47 Score=333.64 Aligned_cols=248 Identities=18% Similarity=0.258 Sum_probs=224.8
Q ss_pred EEEecCCeEEEEEecCeeeeeeCCcceeecCcccceeeEeeeeeEEE-eecCCccccCCCcEEEEEEEEEEEEcccchhh
Q 022993 7 CIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQ-LDVRCETKTKDNVFVNVVASVQYRALAEKASD 85 (289)
Q Consensus 7 ~~~V~~g~~~Vv~~fGk~~~~~~pG~h~~~P~~~~~v~~~~~~r~~~-~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~~~ 85 (289)
+|+|+|||+||+++||++.++++||+||++||+ +++ +.+|++.+. +..+..++|+|++.|.++++++|||.|| .+
T Consensus 1 ~~iV~~ge~~Vv~~fGk~~~~l~pGl~~~~P~i-~~v-~~~~~~~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~d~--~~ 76 (261)
T TIGR01933 1 IYTIGEAERGVVLRFGKYHRTVDPGLNWKPPFI-EEV-YPVNVTAVRNLRKQGLMLTGDENIVNVEMNVQYRITDP--YK 76 (261)
T ss_pred CEEeCCCeEEEEEEcCccccccCCcceEECCCc-eEE-EEeeeEEEEecCCcCeEEeCCCCEEEEEEEEEEEECCH--HH
Confidence 589999999999999999999999999999996 565 578887544 2222368999999999999999999984 67
Q ss_pred hhccccChHHHHHHHHHHHHHHHcCCCCHHHHHh-hHHHHHHHHHHHHHHHhccc--CeEEEEEEEeecCCChHHHHHHH
Q 022993 86 AFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFE-QKNDIAKAVEEELEKAMSHY--GYEIVQTLIVDIEPDEHVKRAMN 162 (289)
Q Consensus 86 ~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~-~R~~i~~~v~~~l~~~l~~~--Gi~V~~v~I~~i~~p~~v~~a~~ 162 (289)
++|++.+++..|.+.+++++|+++|+++++++++ +|++|+..+.+.+++.++.| ||.|++|.|++++||+++.++|+
T Consensus 77 ~~~~~~~~~~~l~~~~~s~lR~vig~~~l~eil~~~R~~i~~~i~~~l~~~~~~~~~GI~V~~v~I~~i~~p~~v~~a~~ 156 (261)
T TIGR01933 77 YLFSVENPEDSLRQATDSALRGVIGDSTMDDILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARPPEEVKEAFD 156 (261)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEEecCCCHHHHHHHH
Confidence 8899999999999999999999999999999998 79999999999999999976 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHH
Q 022993 163 EINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQY 242 (289)
Q Consensus 163 ~~~~A~~~~~a~~~~Ae~~~~~~i~~A~aeaea~~~~Aea~a~a~~~~aea~a~~~~~~~~a~~~~~~~~~~~~~l~~~~ 242 (289)
+++.|++++++.+.+|+++++..+.+|++++++.+++|+|++++..++|+|+++++..++++|.. +|+ ++.+++|
T Consensus 157 ~~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~a~g~a~~~~~~~~ay~~--~p~---~~~~~~~ 231 (261)
T TIGR01933 157 DVIIAREDEERYINEAEAYANEVVPKARGDAQRIIEEARGYKERRINRAKGDVARFTKLLAEYKK--APD---VTRERLY 231 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--ChH---HHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999863 454 5667779
Q ss_pred HHHHHHHhccCCCcEEEecCCC
Q 022993 243 FDTMKEIGASSKTNSVFIPHGP 264 (289)
Q Consensus 243 le~l~~~~~~~~~~~i~lp~~~ 264 (289)
||+++++++ +++++++++++.
T Consensus 232 le~~~~~~~-~~~~~~~~~~~~ 252 (261)
T TIGR01933 232 LETMEKVLS-NTRKVLLDDKKG 252 (261)
T ss_pred HHHHHHHHc-cCCeEEEECCCC
Confidence 999999995 456778888764
No 6
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=100.00 E-value=1.6e-46 Score=338.71 Aligned_cols=252 Identities=13% Similarity=0.176 Sum_probs=224.8
Q ss_pred CceeEEEecCCeEEEEEecCeeeeee-------CCcceeecCcccceeeEeeeeeEEEeecCC-ccccCCCcEEEEEEEE
Q 022993 3 QALGCIQVDQSTVAIKETFGKFDDVL-------EPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASV 74 (289)
Q Consensus 3 ~~~~~~~V~~g~~~Vv~~fGk~~~~~-------~pG~h~~~P~~~~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v 74 (289)
+++||++|++||+||+++||++.++. +||+||++||+ +++ +.+|+|.+.++.+. .++|+|+++|.|++++
T Consensus 16 l~~~~~iV~~ge~gVv~~fGk~~~~~~~~~~v~~pGlhf~~P~i-~~v-~~vd~r~q~~~~~~~~vlTkD~~~V~Vd~~V 93 (317)
T TIGR01932 16 LFQPFFIIKEGERGIITRFGKILKDNNHHVLVYEPGLHFKIPFI-EHV-KIFDAKIQTMDGRPDRIPTKEKKDIIIDTYI 93 (317)
T ss_pred HHheEEEECCCeEEEEEecCceeccccccccccCCCeEEEeccc-cEE-EEeeeeEEEecCCcceeECCCCCEEEEEEEE
Confidence 35799999999999999999998654 79999999996 566 58999999999876 8999999999999999
Q ss_pred EEEEcccchhhhhcccc--C---hHHHHHHHHHHHHHHHcCCCCHHHHHhh-HHHH------------------------
Q 022993 75 QYRALAEKASDAFYKLS--N---TRSQIQAYVFDVIRASVPKLDLDATFEQ-KNDI------------------------ 124 (289)
Q Consensus 75 ~yrI~d~~~~~~~~~~~--~---~~~~l~~~~~~~lr~~i~~~~~~~i~~~-R~~i------------------------ 124 (289)
+|||.|+ .++++++. + ++..|.+.+++++|+++|++++++++++ |++|
T Consensus 94 ~yrV~d~--~~~~~~~~~~~~~~~~~~l~~~~~~~lR~vig~~tl~eil~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~ 171 (317)
T TIGR01932 94 RWRIEDF--KKYYLSTGGGTISAAEVLIKRKIDDRLRSEIGVLGLKEIVRSSNDQLDTLVSKLALNRGGKINKIAMTITK 171 (317)
T ss_pred EEEECCH--HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHccCcHHHHHhcchHHhhhhhchhhccccccccccccccch
Confidence 9999984 56666544 3 4667999999999999999999999976 6655
Q ss_pred -----HHHHHHHHHHHhcccCeEEEEEEEeecCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 022993 125 -----AKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLA 199 (289)
Q Consensus 125 -----~~~v~~~l~~~l~~~Gi~V~~v~I~~i~~p~~v~~a~~~~~~A~~~~~a~~~~Ae~~~~~~i~~A~aeaea~~~~ 199 (289)
...+.+.+.+.+.+|||.|++|.|+++.||+++.++|++++.|+|++++...++++++.+..+.++|++++.++.
T Consensus 172 ~r~~l~~~i~~~~~~~~~~~Gi~V~~V~I~~i~~p~~v~~Ai~~~~~aere~~a~~~r~ege~~a~~i~a~A~~e~~~~~ 251 (317)
T TIGR01932 172 GREILAREISQIANSQLKDIGIEVVDVRIKKINYSDELSESIYNRMRSEREQIARMHRSQGEEKAEEILGKAEYEVRKIL 251 (317)
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHHHHHHHHHhccCCCcEEEecCCC
Q 022993 200 GLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGP 264 (289)
Q Consensus 200 Aea~a~a~~~~aea~a~~~~~~~~a~~~~~~~~~~~~~l~~~~le~l~~~~~~~~~~~i~lp~~~ 264 (289)
|+|++++..++|+|++++++.++++|.+ +| .++.+++|||+|++++++ +++++++|+|.
T Consensus 252 aeA~a~a~~~~Aegea~a~~~~~~a~~~--~p---~~~~~~~~le~~~~~~~~-~~~~~vl~~~~ 310 (317)
T TIGR01932 252 SEAYRTARIIKGEGDAEAAKIYSDAYGK--DP---EFYSFWRSLEAYEKSFKD-NQDEKVLSTDS 310 (317)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHcc--CH---HHHHHHHHHHHHHHHhCC-CCCEEEECCCc
Confidence 9999999999999999999999999974 44 356678899999999963 55689999884
No 7
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=7.3e-46 Score=323.86 Aligned_cols=234 Identities=20% Similarity=0.244 Sum_probs=215.0
Q ss_pred EEEecCCeEEEEEecCeeee-eeCCcceeecCcccceeeEeeeeeEEEeecCC-ccccCCCcEEEEEEEEEEEEcccchh
Q 022993 7 CIQVDQSTVAIKETFGKFDD-VLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKAS 84 (289)
Q Consensus 7 ~~~V~~g~~~Vv~~fGk~~~-~~~pG~h~~~P~~~~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~d~~~~ 84 (289)
||+|++||+||+++||++.+ +++||+||++||+ +.+ +.+|++.+.++.+. .+.|+|++.|++++++.|||.|| .
T Consensus 1 ~~iV~~ge~~Vv~~~Gk~~~~~~~pG~~~~~P~i-~~v-~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~--~ 76 (242)
T cd03405 1 LFIVDEGEQAVVLRFGEVVRVVTEPGLHFKLPFI-QQV-KKFDKRILTLDSDPQRVLTKDKKRLIVDAYAKWRITDP--L 76 (242)
T ss_pred CEEeCCCeEEEEEEcCccccccCCCCeeEEcCCc-ceE-EEEcCEEEeccCCcceEEccCCcEEEEEEEEEEEEcCH--H
Confidence 68999999999999999987 6899999999996 455 68999999998764 89999999999999999999985 4
Q ss_pred hhhccccChH----HHHHHHHHHHHHHHcCCCCHHHHHhh-HHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCChHHHH
Q 022993 85 DAFYKLSNTR----SQIQAYVFDVIRASVPKLDLDATFEQ-KNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKR 159 (289)
Q Consensus 85 ~~~~~~~~~~----~~l~~~~~~~lr~~i~~~~~~~i~~~-R~~i~~~v~~~l~~~l~~~Gi~V~~v~I~~i~~p~~v~~ 159 (289)
++++++.++. ..|.+.+++++|+++|++++++++++ |++|++.+++.|++.+.+|||+|++|.|++|+||+++.+
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~~~~~lr~vi~~~~~~el~~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~i~~ 156 (242)
T cd03405 77 RFYQAVGGEERAAETRLDQIVNSALRAEFGKRTLIELVSGERGELMEEIRRAVAEEAKELGIEVVDVRIKRIDLPEEVSE 156 (242)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHHHHccCcEEEEEEEEeccCCHHHHH
Confidence 5666655543 67899999999999999999999988 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhHHHH
Q 022993 160 AMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLV 239 (289)
Q Consensus 160 a~~~~~~A~~~~~a~~~~Ae~~~~~~i~~A~aeaea~~~~Aea~a~a~~~~aea~a~~~~~~~~a~~~~~~~~~~~~~l~ 239 (289)
+|++++.|+|++.+++.+|++++++.++.|++++++.++.|+|+|++.+++|+|++++++.+++++.+ +|+ ++.+
T Consensus 157 ai~~~~~ae~~~~a~~~~ae~~~~a~~~~aea~~~~~~~~Aea~a~a~~~~a~gea~a~~~~~~a~~~--~p~---~~~~ 231 (242)
T cd03405 157 SVYRRMRAERERIAAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIRGEGDAEAARIYAEAYGK--DPE---FYAF 231 (242)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC--CHH---HHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999973 554 6677
Q ss_pred HHHHHHHHHH
Q 022993 240 TQYFDTMKEI 249 (289)
Q Consensus 240 ~~~le~l~~~ 249 (289)
+++|++|+.+
T Consensus 232 ~~~l~~~~~~ 241 (242)
T cd03405 232 YRSLEAYRNS 241 (242)
T ss_pred HHHHHHHHhh
Confidence 8899999875
No 8
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=9e-45 Score=321.17 Aligned_cols=239 Identities=23% Similarity=0.278 Sum_probs=213.7
Q ss_pred ceeEEEecCCeEEEEEecCeeeeeeCCcceeecCcccceeeEeeeeeEE----------Ee--ec-CCccccCCCcEEEE
Q 022993 4 ALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQ----------QL--DV-RCETKTKDNVFVNV 70 (289)
Q Consensus 4 ~~~~~~V~~g~~~Vv~~fGk~~~~~~pG~h~~~P~~~~~v~~~~~~r~~----------~~--~~-~~~v~T~D~~~v~v 70 (289)
++||++|+|||+|||++||+++++++||+||++||+. .+...++++.+ .. .. +..+.|+|++.|.+
T Consensus 12 ~~s~~~V~~ge~gVV~~fGk~~~~~~pGlh~~~P~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~T~D~~~v~v 90 (266)
T cd03404 12 LSGFYIVQPGERGVVLRFGKYSRTVEPGLHWKLPYPI-EVVEVVPVFQLRSVGIPVRVGSVRSVPGESLMLTGDENIVDV 90 (266)
T ss_pred HcEEEEECCCceEEeEEcCccccccCCceeEecCCCc-EEEEEecceeEEeeccccccccccCCCcccceEeCCCCEEEE
Confidence 5789999999999999999999999999999999974 44334444211 11 11 13789999999999
Q ss_pred EEEEEEEEcccchhhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHhh-HHHHHHHHHHHHHHHhccc--CeEEEEEE
Q 022993 71 VASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ-KNDIAKAVEEELEKAMSHY--GYEIVQTL 147 (289)
Q Consensus 71 ~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~-R~~i~~~v~~~l~~~l~~~--Gi~V~~v~ 147 (289)
++++.|||.|| .+++|+..|++..|.+.+++++|+++|++++++++++ |+++.+.+++.+++.++.| ||.|++|.
T Consensus 91 d~~v~yrI~d~--~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~eil~~~R~~i~~~i~~~l~~~~~~~~~Gi~v~~v~ 168 (266)
T cd03404 91 EFAVQYRISDP--YDYLFNVRDPEGTLRQAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAILDAYKAGIEIVGVN 168 (266)
T ss_pred EEEEEEEECCH--HHHHhhCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHhhccCCCeEEEEEE
Confidence 99999999995 5678889999999999999999999999999999997 9999999999999999977 99999999
Q ss_pred EeecCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 022993 148 IVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPG 227 (289)
Q Consensus 148 I~~i~~p~~v~~a~~~~~~A~~~~~a~~~~Ae~~~~~~i~~A~aeaea~~~~Aea~a~a~~~~aea~a~~~~~~~~a~~~ 227 (289)
|+++.||+++.++|++++.|++++++.+.+|+++++..+..|+++|++.+++|+|++++..+.|+|++++++.++++|.+
T Consensus 169 i~~i~~p~~i~~a~~~~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae~~a~~~~~~~~a~~~ 248 (266)
T cd03404 169 LQDADPPEEVQDAFDDVNKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQGEAARFESLLAEYKK 248 (266)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred CCcchhhhHHHHHHHHHHHHHHh
Q 022993 228 TSSKDVMDMVLVTQYFDTMKEIG 250 (289)
Q Consensus 228 ~~~~~~~~~~l~~~~le~l~~~~ 250 (289)
+|+ .+.++.|++++++++
T Consensus 249 --~~~---~~~~~~~~~~~~~~~ 266 (266)
T cd03404 249 --APD---VTRERLYLETMEEVL 266 (266)
T ss_pred --ChH---HHHHHHHHHHHHHhC
Confidence 454 455667999999874
No 9
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-41 Score=301.03 Aligned_cols=256 Identities=28% Similarity=0.407 Sum_probs=230.9
Q ss_pred ceeEEEecCCeEEEEEecCeeeeeeC-CcceeecCc---ccceeeEeeeeeEEEeec-CC-ccccCCCcEEEEEEEEEEE
Q 022993 4 ALGCIQVDQSTVAIKETFGKFDDVLE-PGCHCLPWC---LGSQVAGQLSLRVQQLDV-RC-ETKTKDNVFVNVVASVQYR 77 (289)
Q Consensus 4 ~~~~~~V~~g~~~Vv~~fGk~~~~~~-pG~h~~~P~---~~~~v~~~~~~r~~~~~~-~~-~v~T~D~~~v~v~~~v~yr 77 (289)
++++++|++++.+++++||++.++++ ||+||++|| +.. +...++.+.++++. +. .+.|+|+..|.||++++||
T Consensus 18 ~~~~~~v~~~~~~vv~r~G~~~~~~~~pGl~f~iP~~~~~~~-~~~~~~~~~~~~d~~~~q~viT~D~~~V~vd~~v~~r 96 (291)
T COG0330 18 FSSIFVVKEGERGVVLRFGRYTRTLGEPGLHFKIPFPEAIEE-VVVRVDLRERTLDVGPPQEVITKDNVIVSVDAVVQYR 96 (291)
T ss_pred HceeEEEcCCceEEEEEecceeeecCCCceEEEcCCccceee-eeeeeeeEEEEeccCCcceEEecCCCEEEEEEEEEEE
Confidence 56899999999999999999999998 999999999 333 33567888999999 54 8999999999999999999
Q ss_pred EcccchhhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHhhHH-HHHHHHHHHHHHHhcccCeEEEEEEEeecCCChH
Q 022993 78 ALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKN-DIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEH 156 (289)
Q Consensus 78 I~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~-~i~~~v~~~l~~~l~~~Gi~V~~v~I~~i~~p~~ 156 (289)
|.|+ ..+++++.+++..+.+.+++.||+++|++++++++++|+ .++..+.+.|++.+++|||.|.+|+|+++.||++
T Consensus 97 v~d~--~~~~~~v~~~~~~l~~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~~~Gi~V~~V~i~~i~~p~e 174 (291)
T COG0330 97 VTDP--QKAVYNVENAEAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKVVDVEIKDIDPPEE 174 (291)
T ss_pred EcCH--HHHHHhcCCHHHHHHHHHHHHHHHHHccccHHHHhhCchHHHHHHHHHHHHHhhhhcCcEEEEEEEeecCCCHH
Confidence 9995 578999999999999999999999999999999999987 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhH
Q 022993 157 VKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDM 236 (289)
Q Consensus 157 v~~a~~~~~~A~~~~~a~~~~Ae~~~~~~i~~A~aeaea~~~~Aea~a~a~~~~aea~a~~~~~~~~a~~~~~~~~~~~~ 236 (289)
+..+|.+++.|++++++.+.+|++++++.+.+|+|++++.++.|+|++++ +..++|++++++.+++++.. ....++
T Consensus 175 v~~a~~~~~~Aer~~ra~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a-~~~~~a~~~~~~~~~~~~~~---~~~~~~ 250 (291)
T COG0330 175 VQAAMEKQMAAERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEAEA-EVIARAEADAAKIIAAALRE---APAAPQ 250 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHhhhhhhhhhhHHHHHHHHHHHHHH-HHHHhhccHHHHHHHhhccc---ccchhH
Confidence 99999999999999999999999999999999999999999999999988 55566666677888887653 334478
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEecCCCCc
Q 022993 237 VLVTQYFDTMKEIGASSKTNSVFIPHGPGA 266 (289)
Q Consensus 237 ~l~~~~le~l~~~~~~~~~~~i~lp~~~~~ 266 (289)
+..++|++.+.+.+.+++++++++|.+.++
T Consensus 251 ~~~~r~~~~~~~~~~~~~~~~v~~p~~~~~ 280 (291)
T COG0330 251 ALAQRYLEELLEIALAGNSKVVVVPNSAGG 280 (291)
T ss_pred HHHHHHHHHHHHHhhCCCCeEEEecCCccc
Confidence 899999999999998777888999987655
No 10
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=100.00 E-value=8.5e-40 Score=280.66 Aligned_cols=213 Identities=27% Similarity=0.364 Sum_probs=178.9
Q ss_pred ecCCeEEEEEecCeeeeeeCCcceeecCcccceeeEeeeeeEEEeecCC-ccccCCCcEEEEEEEEEEEEcccchhhhhc
Q 022993 10 VDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFY 88 (289)
Q Consensus 10 V~~g~~~Vv~~fGk~~~~~~pG~h~~~P~~~~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~ 88 (289)
|++||+||+++||++.++++||+||++||+ +++.+.+|++.+.++++. .+.|+|++++.+++++.|||.|| .++++
T Consensus 1 V~~ge~~Vv~~~G~~~~~~~pG~~f~~P~~-~~v~~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~--~~~~~ 77 (215)
T cd03403 1 VPQYERGVVERLGKYHRTLGPGLHFIIPFI-DRIAYKVDLREQVLDVPPQEVITKDNVTVRVDAVLYYRVVDP--VKAVY 77 (215)
T ss_pred CCcceEEEEEEcCcCccccCCcEEEEeccc-eEEEEEEeeEEEEEccCCceeEcCCCCEEEEEEEEEEEEecH--HHHHh
Confidence 789999999999999999999999999996 454358999999999976 79999999999999999999885 56788
Q ss_pred cccChHHHHHHHHHHHHHHHcCCCCHHHHHhhHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCChHHHHHHHHHHHHH
Q 022993 89 KLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAA 168 (289)
Q Consensus 89 ~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~~~v~~~l~~~l~~~Gi~V~~v~I~~i~~p~~v~~a~~~~~~A~ 168 (289)
...|++..|.+.+++++|+++|++++++++++|+.+++.+++.|++.+.+|||.|++|.|++++||+++.++|++++.|+
T Consensus 78 ~~~~~~~~l~~~~~~~lr~~i~~~~~~el~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~i~~i~~p~~~~~ai~~~~~A~ 157 (215)
T cd03403 78 GVEDYRYAISQLAQTTLRSVIGKMELDELLSEREEINAELVEILDEATDPWGVKVERVEIKDIILPQEIQEAMAKQAEAE 157 (215)
T ss_pred cCCCHHHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHHHhccCeEEEEEEEeeecCCHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHHHHHHHH
Q 022993 169 RLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKE 248 (289)
Q Consensus 169 ~~~~a~~~~Ae~~~~~~i~~A~aeaea~~~~Aea~a~a~~~~aea~a~~~~~~~~a~~~~~~~~~~~~~l~~~~le~l~~ 248 (289)
+++++.+.+|++ ++++.+++|+|+++... .+..+.++++|+++.
T Consensus 158 ~~~~a~i~~A~g-----------e~~a~~~~aea~~~~~~-------------------------~~~~~~~~~~e~~~~ 201 (215)
T cd03403 158 REKRAKIIEAEG-----------ERQAAILLAEAAKQAAI-------------------------NPAALQLRELETLEE 201 (215)
T ss_pred HHHHHHHHHhHH-----------HHHHHHHHHHHHHHHcc-------------------------CHHHHHHHHHHHHHH
Confidence 876554444444 44444443333222110 135677899999999
Q ss_pred HhccCCCcEEEec
Q 022993 249 IGASSKTNSVFIP 261 (289)
Q Consensus 249 ~~~~~~~~~i~lp 261 (289)
++++++.++++.|
T Consensus 202 ~~~~~~~~~~~~~ 214 (215)
T cd03403 202 IAKEAASTVVFPA 214 (215)
T ss_pred HHhccCCeEEeeC
Confidence 9987665555544
No 11
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=100.00 E-value=1.7e-37 Score=262.70 Aligned_cols=191 Identities=17% Similarity=0.216 Sum_probs=162.0
Q ss_pred eEEEecCCeEEEEEecCeeee--eeCCcceeecCcccceeeEeeeeeEEEeecCCccccCCCcEEEEEEEEEEEEcccch
Q 022993 6 GCIQVDQSTVAIKETFGKFDD--VLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKA 83 (289)
Q Consensus 6 ~~~~V~~g~~~Vv~~fGk~~~--~~~pG~h~~~P~~~~~v~~~~~~r~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~ 83 (289)
||++|++|++||+++||+..+ +++||+||++||+ +++ +.+|++.+.+++...+.|+|++.|++++.++|++.++.+
T Consensus 1 ~~~~V~~g~~gVv~~~g~~~~~~~~~pG~h~~~P~~-~~v-~~~~~r~~~~~~~~~~~t~d~~~V~v~~~v~y~v~~~~~ 78 (196)
T cd03401 1 SLYNVDGGHRAVLFNRGGGVKDLVYGEGLHFRIPWF-QKP-IIFDVRARPRNIESTTGSKDLQMVNITLRVLFRPDASQL 78 (196)
T ss_pred CEEEECCCcEEEEEEecCccccCccCCceEEEcccc-cee-EEEEeeeeEEEEeecccCCCCeEEEEEEEEEEEeCHHHH
Confidence 589999999999999998654 8999999999996 565 589999999998888999999999999999999986443
Q ss_pred hhhh--ccccChHHHHHHHHHHHHHHHcCCCCHHHHHhhHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCChHHHHHH
Q 022993 84 SDAF--YKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAM 161 (289)
Q Consensus 84 ~~~~--~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~~~v~~~l~~~l~~~Gi~V~~v~I~~i~~p~~v~~a~ 161 (289)
...+ ++.+..+..|.+.+++.+|+++|+|++++++++|++|+..+++.+.+.+.+|||.|++|.|++|+||+++.++|
T Consensus 79 ~~~~~~~~~~~~~~~i~~~v~~~lR~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai 158 (196)
T cd03401 79 PRIYQNLGEDYDERVLPSIINEVLKAVVAQFTAEELITQREEVSALIREALTERAKDFGIILDDVSITHLTFSKEFTKAV 158 (196)
T ss_pred HHHHHHhCcchHhhhhcHHHHHHHHHHHccCCHHHHHhhHHHHHHHHHHHHHHHHHhCCeEEEEEEEEeccCCHHHHHHH
Confidence 3332 22233456799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHH
Q 022993 162 NEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQ 206 (289)
Q Consensus 162 ~~~~~A~~~~~a~~~~Ae~~~~~~i~~A~aeaea~~~~Aea~a~a 206 (289)
++++.|+++.+.+ +..+.+|++++++.+++|+|+|++
T Consensus 159 ~~k~~a~q~~~~a--------~~~~~~a~~ea~~~~~~A~gea~a 195 (196)
T cd03401 159 EAKQVAQQEAERA--------KFVVEKAEQEKQAAVIRAEGEAEA 195 (196)
T ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhhhhhc
Confidence 9999999875542 223455777777777777766653
No 12
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=1.2e-36 Score=267.64 Aligned_cols=194 Identities=16% Similarity=0.204 Sum_probs=170.3
Q ss_pred ceeEEEecCCeEEEEEecCeee-eeeCCcceeecCcccceeeEeeeeeEEEeecC-CccccCCCcEEEEEEE-EEEEEcc
Q 022993 4 ALGCIQVDQSTVAIKETFGKFD-DVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVR-CETKTKDNVFVNVVAS-VQYRALA 80 (289)
Q Consensus 4 ~~~~~~V~~g~~~Vv~~fGk~~-~~~~pG~h~~~P~~~~~v~~~~~~r~~~~~~~-~~v~T~D~~~v~v~~~-v~yrI~d 80 (289)
++|+++|++||+||++|||++. .+++||+||++||+ +++ ..++++.++++.+ ..+.|+||+.|++|.. +.|++++
T Consensus 2 ~ssv~iV~ege~gVV~RfGkv~~~~l~PGLHfkiPfI-d~V-~~v~vrlq~~~~~~~~v~TkDg~~ItvD~i~v~~ivdp 79 (280)
T cd03406 2 SSALHKIEEGHVGVYYRGGALLTSTSGPGFHLMLPFI-TTY-KSVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLIP 79 (280)
T ss_pred CceEEEECCCeEEEEEECCcccccccCCceEEecCCc-eEE-EEEEeEEEEeccCCcccccCCCcEEEEEEEEEEEecCH
Confidence 5799999999999999999986 58899999999996 566 4689998888875 4889999999999964 5556554
Q ss_pred cchhhhh--ccccChHHHHHHHHHHHHHHHcCCCCHHHHHh-hHHHHHHHHHHHHHHHhccc--CeEEEEEEEeecCCCh
Q 022993 81 EKASDAF--YKLSNTRSQIQAYVFDVIRASVPKLDLDATFE-QKNDIAKAVEEELEKAMSHY--GYEIVQTLIVDIEPDE 155 (289)
Q Consensus 81 ~~~~~~~--~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~-~R~~i~~~v~~~l~~~l~~~--Gi~V~~v~I~~i~~p~ 155 (289)
..+...+ |+..+....|.+.+++++|+++|+++++++++ +|+.+...+++.+++.+++| ||.|.+|.|++++||+
T Consensus 80 ~~~~~~~~~y~~~~~~~~I~~~Vrsavr~vig~~tldeVis~~Rd~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~P~ 159 (280)
T cd03406 80 DSVYDIVKNYTADYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKIPE 159 (280)
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHhhhCCHHHHHhccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEEecCCCH
Confidence 4334433 45566788899999999999999999999998 59999999999999999988 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 022993 156 HVKRAMNEINAAARLRL--------AANEKAEAEKILQIKRAEGEAESKYLAG 200 (289)
Q Consensus 156 ~v~~a~~~~~~A~~~~~--------a~~~~Ae~~~~~~i~~A~aeaea~~~~A 200 (289)
++.++| ++|.|||++. +.+.+||+++...+..|+++|+..++.=
T Consensus 160 ~V~~af-erM~aER~k~~~~~~~~~~~~~~ae~~~~~~~~~a~~~~~~~~~~~ 211 (280)
T cd03406 160 AIRRNY-ELMEAEKTKLLIAIQKQKVVEKEAETERKKAVIEAEKVAQVAKILF 211 (280)
T ss_pred HHHHHH-HHHHHHHHhhhhccchhHHHHHHhhHHHHHHHHHHHHHhhHHHHHH
Confidence 999998 7999999999 9999999999999999999998766543
No 13
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=6.5e-36 Score=255.85 Aligned_cols=170 Identities=15% Similarity=0.290 Sum_probs=157.8
Q ss_pred eEEEecCCeEEEEEecCeeeeee-CCcceeecCcccceeeEeeeeeEEEeecCC-ccccCCCcEEEEEEEEEEEEcccch
Q 022993 6 GCIQVDQSTVAIKETFGKFDDVL-EPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKA 83 (289)
Q Consensus 6 ~~~~V~~g~~~Vv~~fGk~~~~~-~pG~h~~~P~~~~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~d~~~ 83 (289)
|||+|+|||+||+++||++.++. +||+||++||+ +. ..+|+|.++++.+. .+.|+|++++.++++++|||.||
T Consensus 1 g~~iV~~ge~~Vv~rfGk~~~t~~~pGL~~~~P~~-~~--~~vd~R~~~~~~~~~~v~T~D~~~v~V~~~V~~rV~Dp-- 75 (219)
T cd03402 1 GLFVVEPNQARVLVLFGRYIGTIRRTGLRWVNPFS-SK--KRVSLRVRNFESEKLKVNDANGNPIEIAAVIVWRVVDT-- 75 (219)
T ss_pred CeEEECCCeeEEEEEcCcCcccccCCceEEEeccc-eE--EEEeeEEEEecCCCceeEcCCCCEEEEEEEEEEEEcCH--
Confidence 58999999999999999999865 99999999996 44 47999999999887 79999999999999999999994
Q ss_pred hhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHh-------hHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCChH
Q 022993 84 SDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFE-------QKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEH 156 (289)
Q Consensus 84 ~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~-------~R~~i~~~v~~~l~~~l~~~Gi~V~~v~I~~i~~p~~ 156 (289)
.+++|++.|++..|...+++++|+++|+++++++++ +|++++.++++.+++.++.|||+|.++.|+++.||++
T Consensus 76 ~ka~~~v~~~~~~l~~~~~salR~vig~~~~d~il~~~~~l~~~r~~I~~~l~~~l~~~l~~~GI~V~~v~I~~l~~p~e 155 (219)
T cd03402 76 AKAVFNVDDYEEFVHIQSESALRHVASQYPYDDPVNKETSLRGNSDEVSDELARELQERLAVAGVEVVEARITHLAYAPE 155 (219)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHccCcHHHHhccccccccCHHHHHHHHHHHHHHHHHhhCcEEEEEEEEeecCCHH
Confidence 688999999999999999999999999999999985 5799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022993 157 VKRAMNEINAAARLRLAANEKAEA 180 (289)
Q Consensus 157 v~~a~~~~~~A~~~~~a~~~~Ae~ 180 (289)
+.++|.++++|++...|+...++|
T Consensus 156 i~~am~~R~~Ae~~~~Ar~~~~~G 179 (219)
T cd03402 156 IAQAMLQRQQASAIIAARRKIVEG 179 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999988877666665
No 14
>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=100.00 E-value=1.4e-35 Score=251.95 Aligned_cols=221 Identities=23% Similarity=0.298 Sum_probs=183.3
Q ss_pred CceeEEEecCCeEEEEEecCeeee--eeCCcceeecCcccceeeEeeeeeEEEeecCC-ccccCCCcEEEEEEEEEEEEc
Q 022993 3 QALGCIQVDQSTVAIKETFGKFDD--VLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRAL 79 (289)
Q Consensus 3 ~~~~~~~V~~g~~~Vv~~fGk~~~--~~~pG~h~~~P~~~~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~ 79 (289)
.|+|+.+|++.|++|++|+|+... ..|||+.|++||+ ++. +++|+|.+.+++|+ +++|+|.+.+.||++|+|||.
T Consensus 51 ~~fclKiv~eYeR~VIfRLGRl~~~~~rGPGi~fvlPCI-Dt~-~kVDLRt~sfnVPpqeIltkDsvtvsVdAvVyyri~ 128 (288)
T KOG2621|consen 51 IWFCLKIVQEYERAVIFRLGRLRTGGARGPGLFFLLPCI-DTF-RKVDLRTQSFNVPPQEILTKDSVTISVDAVVYYRIS 128 (288)
T ss_pred HHHHHHhhHHHhhhhheeeeeccccCCCCCCeEEEeccc-cee-eeeeeeEEeecCCHHHHhcccceEEEeceEEEEEec
Confidence 478899999999999999999875 7799999999997 565 69999999999998 999999999999999999999
Q ss_pred ccchhhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHhhHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCChHHHH
Q 022993 80 AEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKR 159 (289)
Q Consensus 80 d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~~~v~~~l~~~l~~~Gi~V~~v~I~~i~~p~~v~~ 159 (289)
|| ...+.+++|.....+-++++.||+++|+.++.|++++|+.++.+++..|++....|||+|++|+|+||.+|.+.++
T Consensus 129 dp--i~sv~~V~Da~~sTr~lAqttLrn~lgtk~L~eils~r~~is~~~~~~Ld~~T~~WGvkVeRVEikDvrlp~qlqr 206 (288)
T KOG2621|consen 129 DP--IIAVNNVGDADNATRLLAQTTLRNYLGTKTLSEILSSREVIAQEAQKALDEATEPWGVKVERVEIKDVRLPAQLQR 206 (288)
T ss_pred CH--HHHHHhccCHHHHHHHHHHHHHHHHHccCcHHHHHHhHHHHHHHHHHHhhhcccccceEEEEEEEeeeechHhhhh
Confidence 94 6789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhHHHH
Q 022993 160 AMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLV 239 (289)
Q Consensus 160 a~~~~~~A~~~~~a~~~~Ae~~~~~~i~~A~aeaea~~~~Aea~a~a~~~~aea~a~~~~~~~~a~~~~~~~~~~~~~l~ 239 (289)
+|....+|.|+.++.+..||+ |..+-.. ++++...+++ + +..++
T Consensus 207 amaaeAeA~reA~Akviaaeg----------------------e~~as~a----l~~aa~v~~~------s----p~alq 250 (288)
T KOG2621|consen 207 AMAAEAEATREARAKVIAAEG----------------------EKKASEA----LKEAADVISE------S----PIALQ 250 (288)
T ss_pred hhhchhhhhhhhhhhHHHHHh----------------------hhHHHHH----HHHhhccccC------C----chhhh
Confidence 988655555544433333333 2222211 1222111111 2 45688
Q ss_pred HHHHHHHHHHhccCCCcEEEecCCC
Q 022993 240 TQYFDTMKEIGASSKTNSVFIPHGP 264 (289)
Q Consensus 240 ~~~le~l~~~~~~~~~~~i~lp~~~ 264 (289)
+|||+++..++. .+++++++|.+.
T Consensus 251 LryLqtl~sia~-e~~~tivfP~p~ 274 (288)
T KOG2621|consen 251 LRYLQTLNSIAA-EKNSTIVFPLPI 274 (288)
T ss_pred hhhhhcchhhhc-CCCCCcccCCCH
Confidence 999999999976 567899999763
No 15
>smart00244 PHB prohibitin homologues. prohibitin homologues
Probab=99.97 E-value=1.1e-30 Score=213.47 Aligned_cols=156 Identities=30% Similarity=0.427 Sum_probs=144.2
Q ss_pred eeEEEecCCeEEEEEecCeeeeeeCCcceeecCcccceeeEeeeeeEEEeecCC-ccccCCCcEEEEEEEEEEEEcccch
Q 022993 5 LGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKA 83 (289)
Q Consensus 5 ~~~~~V~~g~~~Vv~~fGk~~~~~~pG~h~~~P~~~~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~d~~~ 83 (289)
+||++|++||+||+++||++.++++||+||++||+ +++ +.++++.+.++.+. .+.|+|++++.+++++.|||.||
T Consensus 1 ~~~~~V~~g~~~v~~~~G~~~~~~~pG~~~~~P~~-~~~-~~~~~~~~~~~~~~~~~~t~d~~~v~v~~~v~~rv~d~-- 76 (160)
T smart00244 1 AAIKVVGEGEAGVVERLGRVLRVLGPGLHFLIPFI-DRV-KKVDLRAQTDDVPPQEIITKDNVKVSVDAVVYYRVLDP-- 76 (160)
T ss_pred CcEEEEcccEEEEEEecCccccccCCCEEEEecce-eEE-EEEeeEEEeecCCceEEEecCCcEEEEeEEEEEEEccH--
Confidence 47999999999999999999999999999999996 555 58999999998876 88999999999999999999996
Q ss_pred hhhhccccChH-HHHHHHHHHHHHHHcCCCCHHHHHh-hHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCChHHHHHH
Q 022993 84 SDAFYKLSNTR-SQIQAYVFDVIRASVPKLDLDATFE-QKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAM 161 (289)
Q Consensus 84 ~~~~~~~~~~~-~~l~~~~~~~lr~~i~~~~~~~i~~-~R~~i~~~v~~~l~~~l~~~Gi~V~~v~I~~i~~p~~v~~a~ 161 (289)
..++++..+++ ..|.+.+++++|+++++++++++++ +|+++++.+++.+++.+++||++|.+|.|+++.+|++++++|
T Consensus 77 ~~~~~~~~~~~~~~l~~~i~~~ir~~i~~~~~~~i~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~i~~i~~p~~i~~ai 156 (160)
T smart00244 77 LKAVYRVLDADYAVIEQLAQTTLRSVIGKMTLDELLTDEREKISENIREELNERAEAWGIEVEDVEIKDIRLPEEIQEAM 156 (160)
T ss_pred HHHhhhcCCHHHHHHHHHHHHHHHHHHccccHHHHHHhhHHHHHHHHHHHHHHHHHhCCCEEEEEEEEecCCCHHHHHHH
Confidence 45677777777 5899999999999999999999999 699999999999999999999999999999999999999999
Q ss_pred HHH
Q 022993 162 NEI 164 (289)
Q Consensus 162 ~~~ 164 (289)
+++
T Consensus 157 ~~k 159 (160)
T smart00244 157 EQQ 159 (160)
T ss_pred Hhh
Confidence 875
No 16
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance. A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.
Probab=99.97 E-value=6e-31 Score=218.78 Aligned_cols=170 Identities=30% Similarity=0.447 Sum_probs=115.3
Q ss_pred EEecCCeEEEEEecCeeeeeeCCcceeecCcccceeeEeeeeeEEEeecCC---ccccCCCcEEEEEEEEEEEEcccchh
Q 022993 8 IQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC---ETKTKDNVFVNVVASVQYRALAEKAS 84 (289)
Q Consensus 8 ~~V~~g~~~Vv~~fGk~~~~~~pG~h~~~P~~~~~v~~~~~~r~~~~~~~~---~v~T~D~~~v~v~~~v~yrI~d~~~~ 84 (289)
|+|++||+||+++||++..+++||+||++||+ +.+ +.+|++.+++++.. .+.|+|+..+.+++++.|||.++ .
T Consensus 1 ~~V~~g~~~V~~~~G~~~~~~~~G~~~~~P~~-~~~-~~~~~~~~~~~~~~~~~~~~t~D~~~v~v~~~v~y~i~~~--~ 76 (179)
T PF01145_consen 1 YTVPPGEVGVVVRFGKVKDVLGPGLHFVIPFI-QKV-YVYPTRVQTIEFTREPITVRTKDGVPVDVDVTVTYRIEDP--P 76 (179)
T ss_dssp -------------------------------E-EE---S--SS-EEEEEEE--EEEE-TTS-EEEEEEEEEEEES-C--C
T ss_pred CEeCCCEEEEEEECCeEeEEECCCeEEEeCCc-CeE-EEEeCEEEecccchhhhhhhhcccceeeeeEEEEEEechH--H
Confidence 58999999999999999999999999999985 565 58999999999987 99999999999999999999764 3
Q ss_pred hhhccc----cChHHHHHHHHHHHHHHHcCCCCHHHHHhhHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCChHHHHH
Q 022993 85 DAFYKL----SNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRA 160 (289)
Q Consensus 85 ~~~~~~----~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~~~v~~~l~~~l~~~Gi~V~~v~I~~i~~p~~v~~a 160 (289)
.++.++ .+++..|++.+++++|++++++++++++++|.++.+.+++.|++.+.+|||+|.+|.|.++.+|+++.++
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~v~~~l~~~~~~~Gi~i~~v~i~~~~~~~~~~~~ 156 (179)
T PF01145_consen 77 KFVQNYEGGEEDPENLLRQIVESALREVISSYSLEEIYSNREEIADEVREQLQEALEEYGIEITSVQITDIDPPQEVEEA 156 (179)
T ss_dssp CCCCCCSS-HCHHHHHHHHHHHHHHHHHHHCS-HHHHHHTHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEECTTHHHH
T ss_pred HHHHhhhcchhhhhhhhhhhhhhhhheEeeeeehHHhhhhhhhhhHhHHHHHhhhccccEEEEEEEEEeecCCCHHHHHH
Confidence 444444 6788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHH
Q 022993 161 MNEINAAARLR-LAANEKAEAE 181 (289)
Q Consensus 161 ~~~~~~A~~~~-~a~~~~Ae~~ 181 (289)
|.++..|++++ ++++.+||++
T Consensus 157 i~~~~~a~~~~~~~~~~~a~~e 178 (179)
T PF01145_consen 157 IEEKQRAEQEAQQAEIERAEAE 178 (179)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhC
Confidence 99999998887 5554444443
No 17
>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.4e-26 Score=189.17 Aligned_cols=235 Identities=17% Similarity=0.266 Sum_probs=187.6
Q ss_pred CceeEEEecCCeEEEEE-ecCeee-eeeCCcceeecCcccceeeEeeeeeEEEeecCCccccCCCcEEEEEEEEEEEEcc
Q 022993 3 QALGCIQVDQSTVAIKE-TFGKFD-DVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALA 80 (289)
Q Consensus 3 ~~~~~~~V~~g~~~Vv~-~fGk~~-~~~~pG~h~~~P~~~~~v~~~~~~r~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d 80 (289)
.-.|+|.|+-||++|+| |+|.++ +++..|.||.+||++..+ .+|+|-++..+....-|+|-+-|++...|--|-..
T Consensus 34 v~~sl~nVdgGHRAI~fnRi~Gik~~iy~EGtHf~iPwfe~pI--iYDvRarP~~i~S~tGskDLQmVnI~lRVLsRP~~ 111 (290)
T KOG3090|consen 34 VTQSLYNVDGGHRAIVFNRIGGIKDDIYPEGTHFRIPWFERPI--IYDVRARPRLISSPTGSKDLQMVNIGLRVLSRPMA 111 (290)
T ss_pred ecceeEeecCCceEEEEeccccchhccccCCceEeeeccccce--eeeeccCcccccCCCCCcceeEEEeeeEEecCCCh
Confidence 34678999999999998 788877 689999999999975443 78999999988889999999999999988777765
Q ss_pred cchhhhhcc-ccChHH-HHHHHHHHHHHHHcCCCCHHHHHhhHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCChHHH
Q 022993 81 EKASDAFYK-LSNTRS-QIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVK 158 (289)
Q Consensus 81 ~~~~~~~~~-~~~~~~-~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~~~v~~~l~~~l~~~Gi~V~~v~I~~i~~p~~v~ 158 (289)
......+.. ..|+++ .|-.++.+.|+.++++++..++++.|+.++..+++.|-++..++.|.+++|.|+++.|.+++.
T Consensus 112 ~~Lp~iyrtLG~~y~ERVLPSIinEvLKaVVAqfNASqLITQRe~VSrliRk~L~eRA~~Fni~LDDVSiT~l~F~~efT 191 (290)
T KOG3090|consen 112 DQLPEIYRTLGQNYDERVLPSIINEVLKAVVAQFNASQLITQREQVSRLIRKILTERAADFNIALDDVSITELTFGKEFT 191 (290)
T ss_pred hhhHHHHHHhccCcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccceEeecceeeeeecCHHHH
Confidence 333322222 346654 578899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhHHH
Q 022993 159 RAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVL 238 (289)
Q Consensus 159 ~a~~~~~~A~~~~~a~~~~Ae~~~~~~i~~A~aeaea~~~~Aea~a~a~~~~aea~a~~~~~~~~a~~~~~~~~~~~~~l 238 (289)
.|++.++.|.|+.+.+ .-.+.+|+.|.+.++++|+|||++-+..++|.+. + +.++
T Consensus 192 aAiEaKQvA~QeAqRA--------~F~VekA~qek~~~ivrAqGEaksAqliGeAi~n-------------n----~~fi 246 (290)
T KOG3090|consen 192 AAIEAKQVAAQEAQRA--------KFIVEKAEQEKQSAIVRAQGEAKSAQLIGEAIKN-------------N----PAFI 246 (290)
T ss_pred HHHHHHHHHHHHHhhh--------hhhhHHHHHhhhhhhhhhccchHHHHHHHHHHhC-------------C----ccce
Confidence 9999999999886553 2344556666666666666666665666655543 2 2456
Q ss_pred HHHHHHHHHHHhc--cCCCcEEEecCCC
Q 022993 239 VTQYFDTMKEIGA--SSKTNSVFIPHGP 264 (289)
Q Consensus 239 ~~~~le~l~~~~~--~~~~~~i~lp~~~ 264 (289)
.+|.+++-++++. +.+.|.++|+++.
T Consensus 247 ~Lrki~aAr~IA~tia~S~NkvyL~~~~ 274 (290)
T KOG3090|consen 247 TLRKIEAAREIAQTIASSANKVYLSSDD 274 (290)
T ss_pred eehhHHHHHHHHHHHhcCCCeEEecccc
Confidence 6788888888764 3567889999773
No 18
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.7e-25 Score=182.82 Aligned_cols=232 Identities=19% Similarity=0.265 Sum_probs=182.1
Q ss_pred eeEEEecCCeEEEEE-ecCeee-eeeCCcceeecCcccceeeEeeeeeEEEeecCCccccCCCcEEEEEEEEEEEEcccc
Q 022993 5 LGCIQVDQSTVAIKE-TFGKFD-DVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEK 82 (289)
Q Consensus 5 ~~~~~V~~g~~~Vv~-~fGk~~-~~~~pG~h~~~P~~~~~v~~~~~~r~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~ 82 (289)
+++|.|+-||++|++ ||-.+. .+.+.|.||.+||.... ..+|.|.++.+++...-|+|-+.|++...+.||-....
T Consensus 25 s~ly~vdgg~ravifdrf~gv~~~vvgegthflipw~qk~--~i~d~rs~p~~v~~itGskdLQ~VniTlril~rp~~sq 102 (271)
T KOG3083|consen 25 SALYNVDGGHRAVIFDRFRGVQDQVVGEGTHFLIPWVQKP--IIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVVSQ 102 (271)
T ss_pred hhhcccCCCceeEEeecccchhhhcccCCceeeeeeccCc--EEEeccCCCcccccccCchhhhcccceEEEEecccccc
Confidence 568999999999998 675555 58899999999997543 47899999999988999999999999999999887654
Q ss_pred hhhhhccc-cChHH-HHHHHHHHHHHHHcCCCCHHHHHhhHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCChHHHHH
Q 022993 83 ASDAFYKL-SNTRS-QIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRA 160 (289)
Q Consensus 83 ~~~~~~~~-~~~~~-~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~~~v~~~l~~~l~~~Gi~V~~v~I~~i~~p~~v~~a 160 (289)
....|.+. .|+++ .|-.+....|++++++++..++++.|+.+++.+++.|.++...+|+.+++|.|+.+.+..++.+|
T Consensus 103 LP~If~~~G~dyDErVLpsI~~eiLKsVVa~FdA~eliTqRe~vS~~v~~~lt~rA~~Fgl~LddvsiThltfGkEFt~A 182 (271)
T KOG3083|consen 103 LPCIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSNDLTERAATFGLILDDVSITHLTFGKEFTEA 182 (271)
T ss_pred cchHHHhhcccccccccccchHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHhhCeeechhhhhhhhhhHHHHHH
Confidence 44434333 45655 56677789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhHH
Q 022993 161 MNEINAAARLRLAA---NEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMV 237 (289)
Q Consensus 161 ~~~~~~A~~~~~a~---~~~Ae~~~~~~i~~A~aeaea~~~~Aea~a~a~~~~aea~a~~~~~~~~a~~~~~~~~~~~~~ 237 (289)
++.++.|+|+.+.+ ..+||.++++.++.||||++++.+. +.+.+.+ .+-+
T Consensus 183 vE~KQVAQQEAErarFvVeKAeQqk~aavIsAEGds~aA~li-----------~~sla~a----------------G~gL 235 (271)
T KOG3083|consen 183 VEAKQVAQQEAERARFVVEKAEQQKKAAVISAEGDSKAAELI-----------ANSLATA----------------GDGL 235 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhheeecccchHHHHHH-----------HHHHhhc----------------CCce
Confidence 99999999986653 3445555555555555555554443 3333321 2355
Q ss_pred HHHHHHHHHHHHhc--cCCCcEEEecCCCC
Q 022993 238 LVTQYFDTMKEIGA--SSKTNSVFIPHGPG 265 (289)
Q Consensus 238 l~~~~le~l~~~~~--~~~~~~i~lp~~~~ 265 (289)
+..+.+|+-++++. +.+.|+.++|.+.+
T Consensus 236 ielrrlEAa~dia~~Ls~s~nv~YLp~g~s 265 (271)
T KOG3083|consen 236 IELRRLEAAEDIAYQLSRSRNVTYLPAGQS 265 (271)
T ss_pred eeehhhhhHHHHHHHHhcCCCceeccCCcc
Confidence 66777888887763 36788999996543
No 19
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.89 E-value=1.5e-22 Score=172.66 Aligned_cols=158 Identities=17% Similarity=0.225 Sum_probs=131.1
Q ss_pred ceeEEEecCCeEEEEEecCeeeeeeCCcceeec----Cccc--------------ceeeEeeeeeEEEeecC-------C
Q 022993 4 ALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLP----WCLG--------------SQVAGQLSLRVQQLDVR-------C 58 (289)
Q Consensus 4 ~~~~~~V~~g~~~Vv~~fGk~~~~~~pG~h~~~----P~~~--------------~~v~~~~~~r~~~~~~~-------~ 58 (289)
+.|.++|++||+||++++|++.++++||.|+.+ |++. ..+ +.++++.+..... .
T Consensus 13 ~~s~~iV~e~~~av~~~~Gk~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~ 91 (207)
T cd03408 13 NGSQLIVREGQAAVFVNEGKVADVFAPGGYYLTTNNLPVLAFLLSGDKGFSSPFKGEV-YFFNTRVFTDLLWGTPAPVFG 91 (207)
T ss_pred cCCEEEEcCCcEEEEEECCEEEEEecCCcceeeecCccHHHHhcChhhhCcCCceeEE-EEEECEEEeccccCCCCCeee
Confidence 348899999999999999999999999888665 3321 112 4567776655321 2
Q ss_pred ccccCCCcEEEEEEEEEEEEcccchhhhhccc---------cChHHHHHHHHHHHHHHHcCCCCHHHHHhh--HHHHHHH
Q 022993 59 ETKTKDNVFVNVVASVQYRALAEKASDAFYKL---------SNTRSQIQAYVFDVIRASVPKLDLDATFEQ--KNDIAKA 127 (289)
Q Consensus 59 ~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~---------~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~--R~~i~~~ 127 (289)
...|+|+++|.+++++.|||.|| .+++.++ ++....|.+.+++++|+++|++++++++.+ |+++++.
T Consensus 92 ~~~~~~~v~v~v~~~~~~kI~Dp--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~lr~~i~~~~~~~l~~~~~r~~i~~~ 169 (207)
T cd03408 92 RDSEFGGVPLRAFGTYSLKVTDP--VLFVTNIVGTRGLFTVEDLEKSLRALIVAALSSALSESGLAVMLLAANRDELSKA 169 (207)
T ss_pred eCCccceEEEEeeEEEEEEEcCH--HHHHHHhcCCCcceeHHHHHHHHHHHHHHHHHHHHHhcCCeeEEhhhhHHHHHHH
Confidence 45788999999999999999995 4555433 245678999999999999999999999987 9999999
Q ss_pred HHHHHHHHhcccCeEEEEEEEeecCCChHHHHHHHHH
Q 022993 128 VEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEI 164 (289)
Q Consensus 128 v~~~l~~~l~~~Gi~V~~v~I~~i~~p~~v~~a~~~~ 164 (289)
+++.+++.+.+||++|.+|.|++|.+|++++++|.++
T Consensus 170 v~~~l~~~~~~~Gi~i~~v~I~~i~~p~e~~~ai~~r 206 (207)
T cd03408 170 VREALAPWFASFGLELVSVYIESISYPDEVQKLIDKR 206 (207)
T ss_pred HHHHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHhh
Confidence 9999999999999999999999999999999998864
No 20
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only]
Probab=99.86 E-value=1e-19 Score=150.89 Aligned_cols=192 Identities=14% Similarity=0.183 Sum_probs=146.8
Q ss_pred ceeEEEecCCeEEEEEecCeee-eeeCCcceeecCcccceeeEeeeeeEEEeecCC-ccccCCCcEEEEEEE-EEEEEcc
Q 022993 4 ALGCIQVDQSTVAIKETFGKFD-DVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVAS-VQYRALA 80 (289)
Q Consensus 4 ~~~~~~V~~g~~~Vv~~fGk~~-~~~~pG~h~~~P~~~~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~-v~yrI~d 80 (289)
++++..|++||+||.+|-|... .+.+||+|..+||+ .++ ..+.+..|+-++.. .|.|+.|+.+.+|-. |.-+..+
T Consensus 20 ~s~vHkieEGHvgvYyRGGALL~~~t~PG~Hl~lPFi-Tt~-ksVQvTLQTDev~nvPCGTsGGVlIyfdrIEVVN~L~~ 97 (322)
T KOG2962|consen 20 SSAVHKIEEGHVGVYYRGGALLTSITGPGFHLMLPFI-TTY-KSVQVTLQTDEVKNVPCGTSGGVLIYFDRIEVVNFLRP 97 (322)
T ss_pred HHHHhhcccCceEEEEecceeeeccCCCCcEEEeeee-ece-eeeEEEeeccccccCCCCCCCcEEEEEehhhhhhhhch
Confidence 3456789999999999999976 47899999999997 444 46777777777765 899999998877743 1112222
Q ss_pred cchhhhhccc-cChH-HHHHHHHHHHHHHHcCCCCHHHHHhh-HHHHHHHHHHHHHHHhccc--CeEEEEEEEeecCCCh
Q 022993 81 EKASDAFYKL-SNTR-SQIQAYVFDVIRASVPKLDLDATFEQ-KNDIAKAVEEELEKAMSHY--GYEIVQTLIVDIEPDE 155 (289)
Q Consensus 81 ~~~~~~~~~~-~~~~-~~l~~~~~~~lr~~i~~~~~~~i~~~-R~~i~~~v~~~l~~~l~~~--Gi~V~~v~I~~i~~p~ 155 (289)
..++..+.+. .|++ .+|-+.+.-.+.+.|+.+++.+++-+ .++|.++++..|+..+.++ |+.|..|.++....|+
T Consensus 98 d~Vydiv~NYtvdYD~~lIfnKiHHE~NQFCS~HtLQeVYIdlFDqIDE~lK~ALQ~Dl~~mAPGl~iqaVRVTKPkIPE 177 (322)
T KOG2962|consen 98 DAVYDIVKNYTVDYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKDALQADLTRMAPGLEIQAVRVTKPKIPE 177 (322)
T ss_pred hHHHHHHHHcccCCcchhhhhHHHHHHHhHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEEEecCCCChH
Confidence 2233333232 2444 57889999999999999999999887 9999999999999999998 9999999999999999
Q ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 022993 156 HVKRAMNEINAAAR--------LRLAANEKAEAEKILQIKRAEGEAESKYL 198 (289)
Q Consensus 156 ~v~~a~~~~~~A~~--------~~~a~~~~Ae~~~~~~i~~A~aeaea~~~ 198 (289)
.+...++. |++|+ .+.-.+.+||.++...++.||..|+..++
T Consensus 178 aiRrN~E~-ME~EkTKlLiA~ekQkVvEKeAETerkkAviEAEK~AqVa~I 227 (322)
T KOG2962|consen 178 AIRRNFEL-MEAEKTKLLIAAEKQKVVEKEAETERKKAVIEAEKNAQVAKI 227 (322)
T ss_pred HHHHhHHH-HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99988874 44443 33345667888888888888776654443
No 21
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.83 E-value=2.2e-18 Score=150.64 Aligned_cols=157 Identities=14% Similarity=0.093 Sum_probs=123.9
Q ss_pred EEEecCCeEEEEEecCeeeeeeCCcceeecCcccceeeEeeeeeEEEeecCC-ccccCCCcEEEEEEEEEEEEcccchhh
Q 022993 7 CIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASD 85 (289)
Q Consensus 7 ~~~V~~g~~~Vv~~fGk~~~~~~pG~h~~~P~~~~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~d~~~~~ 85 (289)
|++-.+++..++..+|.-...+-+| .|.+|| + .+ ..+|+...++++.. .+.|+.|+++.|.+..+..|...++..
T Consensus 2 f~~~~~~~~l~itg~g~~~~~lv~~-~wvf~w-q-~~-q~~~ln~mtl~~~~e~v~tsegvP~~vtgVaqvki~~~~~~e 77 (428)
T KOG2668|consen 2 FKVAGASQYLAITGGGIEDIKLVKK-SWVFPW-Q-QC-TVFDVSPMTLTFKVENVMTSEGVPFVVTGVAQVKIRVDDADE 77 (428)
T ss_pred CccCCccceEEeecccccCceeccc-ceeeee-e-ee-eEEeecceeeeeecchhhcccCCceEeeeeEEEeeccCCHHH
Confidence 4566788888899888765555554 466677 4 44 58999999999988 599999999999999888775433211
Q ss_pred --------hhcc-ccChHHHHHHHHHHHHHHHcCCCCHHHHHhhHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCCh-
Q 022993 86 --------AFYK-LSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDE- 155 (289)
Q Consensus 86 --------~~~~-~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~~~v~~~l~~~l~~~Gi~V~~v~I~~i~~p~- 155 (289)
++.. ..+....+...+.+++|.++|+||+++||.+|.++...+.+-.+..+.++||.|.+++|+|+...+
T Consensus 78 lL~~A~e~flgK~~~eIn~~vl~tlEGh~Rai~asmTvEEIyKdrk~F~k~Vfeva~~dl~~mGi~I~s~tiKdl~D~~g 157 (428)
T KOG2668|consen 78 LLLYACEQFLGKSSNEINELVLGTLEGHTRAILASMTVEEIYKDRKEFKKEVFEVAQLDLGQMGIVIYSATIKDLVDVPG 157 (428)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhhHHHHHHHhccHHHHHhhHHHHHHHHHHHhhhhhhhcceEEEEeEhhhhhcccc
Confidence 1111 234456677888899999999999999999999999999999999999999999999999999877
Q ss_pred -HHHHHHHHHHHH
Q 022993 156 -HVKRAMNEINAA 167 (289)
Q Consensus 156 -~v~~a~~~~~~A 167 (289)
++..++.+..+|
T Consensus 158 ~~YlssLGka~ta 170 (428)
T KOG2668|consen 158 HEYLSSLGKATTA 170 (428)
T ss_pred hHHHHHhhhHHHH
Confidence 677777644333
No 22
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.82 E-value=1.6e-19 Score=141.68 Aligned_cols=119 Identities=21% Similarity=0.372 Sum_probs=104.7
Q ss_pred eeeeeEEEeecCCccccCCCcEEEEEEEEEEEEcccchhhhhccc-cC-hHHHHHHHHHHHHHHHcCCCCHHHHHh-hHH
Q 022993 46 QLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKASDAFYKL-SN-TRSQIQAYVFDVIRASVPKLDLDATFE-QKN 122 (289)
Q Consensus 46 ~~~~r~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~-~~-~~~~l~~~~~~~lr~~i~~~~~~~i~~-~R~ 122 (289)
.+++|.++.+.+..+.|+||..+.++++++|||.++.+...+... .+ .+..|.+.+++++|+++|+++++++++ +|+
T Consensus 2 ~~~~r~~~~~~~~~v~T~D~~~v~vd~~v~y~V~~~~~~~~~~~~~~~~~~~~i~~~~~~~lR~~~~~~~~~e~i~~~R~ 81 (124)
T cd03400 2 EYSTRLQEVDEKIDVLSKEGLSINADVSVQYRINPNKAAAVHSKLGTDYARKIVRPTFRSLVREVTGRYTAEQIYSTKRK 81 (124)
T ss_pred cccceeeecccceEEECCCCCEEEEEEEEEEEEChhhHHHHHHHhCcchhheeechhHHHHHHHHhcCCCHHHHhhhhHH
Confidence 367888888888899999999999999999999876554333222 22 445799999999999999999999997 699
Q ss_pred HHHHHHHHHHHHHhcccCeEEEEEEEeecCCChHHHHHHHHH
Q 022993 123 DIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEI 164 (289)
Q Consensus 123 ~i~~~v~~~l~~~l~~~Gi~V~~v~I~~i~~p~~v~~a~~~~ 164 (289)
+|.+.+++.+++.+.+|||.|.+|.|+++.||+++.++++++
T Consensus 82 ~i~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~P~~v~~aI~~k 123 (124)
T cd03400 82 EIESAIKKELIEEFVGDGLILEEVLLRNIKLPDQIADAIEAK 123 (124)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEEEecccCCHHHHHHHHhc
Confidence 999999999999999999999999999999999999999875
No 23
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.
Probab=99.77 E-value=3.3e-18 Score=134.90 Aligned_cols=116 Identities=22% Similarity=0.271 Sum_probs=101.3
Q ss_pred eeeeEEEeecCC-ccccCCCcEEEEEEEEEEEEcccch--hhhhc---c--ccChHHHHHHHHHHHHHHHcCCCCHHHHH
Q 022993 47 LSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKA--SDAFY---K--LSNTRSQIQAYVFDVIRASVPKLDLDATF 118 (289)
Q Consensus 47 ~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~d~~~--~~~~~---~--~~~~~~~l~~~~~~~lr~~i~~~~~~~i~ 118 (289)
+++|.+.++++. .++|+|++++.++++++|||.||.. ...+. + ..+....+.+.+++++|+++|++++++++
T Consensus 2 ~~lr~~~~~~~~q~v~TkD~~~v~vd~~~~~rV~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~~ig~~tl~el~ 81 (128)
T cd03399 2 LSLTSMVLRVGSEAVITRDGVRVDVTAVFQVKVGGTEEAIATAAERFLGKSEEEIEELVKEVLEGHLRAVVGTMTVEEIY 81 (128)
T ss_pred ccccceeeeccccceecCCCcEEEEEEEEEEEeCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 578889999986 8999999999999999999999641 11111 1 13457789999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCChHHHHHHH
Q 022993 119 EQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMN 162 (289)
Q Consensus 119 ~~R~~i~~~v~~~l~~~l~~~Gi~V~~v~I~~i~~p~~v~~a~~ 162 (289)
++|++|..++.+.+...+++|||+|.+|.|++|.+|+.+.+++.
T Consensus 82 ~~R~~i~~~i~~~v~~~~~~~Gi~i~~v~I~~i~~~~~~~~~~~ 125 (128)
T cd03399 82 EDRDKFAEQVQEVVAPDLNKMGLELDSFTIKDITDTDGYLNNLG 125 (128)
T ss_pred HhHHHHHHHHHHHHHHHHHHCCCEEEEEeeEEecCCCCCHHHcC
Confidence 99999999999999999999999999999999999999877764
No 24
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.74 E-value=5.1e-16 Score=145.50 Aligned_cols=190 Identities=21% Similarity=0.190 Sum_probs=148.0
Q ss_pred eEEEecCCeEEEEEec---------CeeeeeeCCcceeecCcccceeeEeeeeeEEEeecC-CccccCCCcEEEEEEEEE
Q 022993 6 GCIQVDQSTVAIKETF---------GKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVR-CETKTKDNVFVNVVASVQ 75 (289)
Q Consensus 6 ~~~~V~~g~~~Vv~~f---------Gk~~~~~~pG~h~~~P~~~~~v~~~~~~r~~~~~~~-~~v~T~D~~~v~v~~~v~ 75 (289)
.||++.+...++|..+ |.-.+++.+|+||.+|++ +.. .++++++.++++. ..+.|+||.++++++..+
T Consensus 33 ~~y~~a~~~~aLI~~g~~~g~~~~~g~~~~vV~gGg~~v~Pi~-q~~-~r~~l~~i~l~v~~~~v~t~Dg~p~~v~~~a~ 110 (548)
T COG2268 33 RFYIIARPNEALIRTGSKLGSKDEAGGGQKVVRGGGAIVMPIF-QTI-ERMSLTTIKLEVEIDNVYTKDGMPLNVEAVAY 110 (548)
T ss_pred eeEEecCCCceEEEeccccCCcccccCCccEEecCceEEecce-eee-EEeeeeeeeeeeeeeeeEecCCCccceeEEEE
Confidence 5666444444444443 444478999999999995 454 5789998888888 489999999999999999
Q ss_pred EEEcccc--hhhhh--cccc----ChHHHHHHHHHHHHHHHcCCCCHHHHHhhHHHHHHHHHHHHHHHhcccCeEEEEEE
Q 022993 76 YRALAEK--ASDAF--YKLS----NTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTL 147 (289)
Q Consensus 76 yrI~d~~--~~~~~--~~~~----~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~~~v~~~l~~~l~~~Gi~V~~v~ 147 (289)
.+|.|.. ...+. +... +....+...+.++||.+++++|+.++..+|..|...+.+.....|++.|+.|+++.
T Consensus 111 v~i~~~~~dI~~aae~~g~Kg~~~~l~~~~~~~l~~~lR~i~a~~t~~el~edR~~F~~~V~~~v~~dL~k~Gl~l~s~~ 190 (548)
T COG2268 111 VKIGDTFQDIATAAERFGGKGSREDLEQLAEDTLEGALRAVLAQMTVEELNEDRLGFAQVVQEVVGDDLSKMGLVLDSLA 190 (548)
T ss_pred EEecCCHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHhhHHhhHHHHHHHHHHHHHHhcCeeeeeee
Confidence 9998841 11221 2222 45567888999999999999999999999999999999999999999999999999
Q ss_pred EeecCCC-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 022993 148 IVDIEPD-------EHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKY 197 (289)
Q Consensus 148 I~~i~~p-------~~v~~a~~~~~~A~~~~~a~~~~Ae~~~~~~i~~A~aeaea~~ 197 (289)
|.|+..+ ..+.++...+..++-.+.+.+.++|.+++..+..++++.++.+
T Consensus 191 I~~i~d~~~~~~d~~~yLda~G~r~i~qv~~~a~ia~~E~~~~t~i~i~~a~~~a~~ 247 (548)
T COG2268 191 INDINDTSKENQDPNNYLDALGRRRIAQVLQDAEIAENEAEKETEIAIAEANRDAKL 247 (548)
T ss_pred ecccccccccccChhhhhhhcChHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhHHHH
Confidence 9999988 8899998888777766666666666666666665555544443
No 25
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins. This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i
Probab=99.66 E-value=2.5e-15 Score=116.20 Aligned_cols=111 Identities=37% Similarity=0.575 Sum_probs=97.6
Q ss_pred EEeecC-CccccCCCcEEEEEEEEEEEEcccchhhhhccccCh--HHHHHHHHHHHHHHHcCCCCHHHHHhhHHHHHHHH
Q 022993 52 QQLDVR-CETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNT--RSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAV 128 (289)
Q Consensus 52 ~~~~~~-~~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~--~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~~~v 128 (289)
.+.+.+ ..+.|+|+.++.+++++.|+|.|+. .+++...+. ...|.+.+.+++|++++.++++++.++|+++++.+
T Consensus 7 ~~~~~~~~~~~t~d~~~i~~~~~~~~~v~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~i~~~v 84 (121)
T cd02106 7 QTLDVPPQEVLTKDNVPVRVDAVVQYRVVDPV--KALYNVRDPEDEEALRQLAQSALRSVIGKMTLDELLEDRDEIAAEV 84 (121)
T ss_pred EEecCCCceEEecCCCEEEEEEEEEEEEeCHH--HHHHhcCCccHHHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHH
Confidence 334333 3899999999999999999999964 345544433 37899999999999999999999999999999999
Q ss_pred HHHHHHHhcccCeEEEEEEEeecCCChHHHHHHHHH
Q 022993 129 EEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEI 164 (289)
Q Consensus 129 ~~~l~~~l~~~Gi~V~~v~I~~i~~p~~v~~a~~~~ 164 (289)
++.+...+.+||++|.+|.|.++.+|+++.++++++
T Consensus 85 ~~~l~~~~~~~Gi~i~~v~i~~i~~~~~~~~ai~~~ 120 (121)
T cd02106 85 REALQEDLDKYGIEVVDVRIKDIDPPEEVQEAMEDR 120 (121)
T ss_pred HHHHHHHHHhcCCEEEEEEEEecCCCHHHHHHHHhh
Confidence 999999999999999999999999999999998865
No 26
>PF13421 Band_7_1: SPFH domain-Band 7 family
Probab=99.52 E-value=9.6e-13 Score=111.99 Aligned_cols=156 Identities=19% Similarity=0.259 Sum_probs=119.7
Q ss_pred eEEEecCCeEEEEEecCeeeeeeCCcceee-------------------cCcccceeeEeeeeeEEE-eecC--CccccC
Q 022993 6 GCIQVDQSTVAIKETFGKFDDVLEPGCHCL-------------------PWCLGSQVAGQLSLRVQQ-LDVR--CETKTK 63 (289)
Q Consensus 6 ~~~~V~~g~~~Vv~~fGk~~~~~~pG~h~~-------------------~P~~~~~v~~~~~~r~~~-~~~~--~~v~T~ 63 (289)
|-.+|++||++|.++-|++..+.+||.|-+ .|| ...| +.++++... ...+ ..+.-.
T Consensus 15 S~LiV~egQ~Avfv~~G~i~d~~~pG~y~l~T~n~P~l~~l~~~~~Gg~spf-~~eV-yFvn~~~~~~~kwGT~~pi~~~ 92 (211)
T PF13421_consen 15 SQLIVREGQCAVFVNDGKIADVFGPGRYTLDTDNIPILSTLKNWKFGGESPF-KAEV-YFVNTKEITNIKWGTPNPIPYR 92 (211)
T ss_pred CEEEECCCCEEEEEECCEEEEEecCceEEEecCCchHHHHHhhhccCCCCCc-eEEE-EEEECeEecCCccCCCCCeeec
Confidence 678999999999999999999999999954 344 2333 567766532 2222 122222
Q ss_pred C----CcEEEEEEEEEEEEcccchhhhh---------ccccChHHHHHHHHHHHHHHHcC--CCCHHHHHhhHHHHHHHH
Q 022993 64 D----NVFVNVVASVQYRALAEKASDAF---------YKLSNTRSQIQAYVFDVIRASVP--KLDLDATFEQKNDIAKAV 128 (289)
Q Consensus 64 D----~~~v~v~~~v~yrI~d~~~~~~~---------~~~~~~~~~l~~~~~~~lr~~i~--~~~~~~i~~~R~~i~~~v 128 (289)
| .+.+.+.+...|||.||. .++ +..++..+.+++.+...+.+.++ +.++.++-.+-.+|++.+
T Consensus 93 D~~~~~v~lra~G~ys~rI~Dp~--~F~~~~vg~~~~~~~~~i~~~l~~~i~~~i~~~l~~~~~~~~~i~a~~~eis~~~ 170 (211)
T PF13421_consen 93 DPEYGPVRLRAFGTYSFRIVDPV--LFIRNLVGTQSEFTTEEINEQLRSEIVQAIADALAESKISILDIPAHLDEISEAL 170 (211)
T ss_pred CCCCCcEEEEEEEEEEEEEeCHH--HHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 2 357788888999999963 332 22344556777777777777776 478899999999999999
Q ss_pred HHHHHHHhcccCeEEEEEEEeecCCChHHHHHHHHHH
Q 022993 129 EEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEIN 165 (289)
Q Consensus 129 ~~~l~~~l~~~Gi~V~~v~I~~i~~p~~v~~a~~~~~ 165 (289)
++.|++.++.+|++|+++.|.+|.+|++++++++++.
T Consensus 171 ~~~l~~~~~~~Gi~l~~f~I~~i~~pee~~~~i~~~~ 207 (211)
T PF13421_consen 171 KEKLNPEFERYGIELVDFGIESISFPEEVQKAIDKRA 207 (211)
T ss_pred HHHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999988653
No 27
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]
Probab=99.07 E-value=5.8e-09 Score=89.76 Aligned_cols=158 Identities=12% Similarity=0.158 Sum_probs=120.6
Q ss_pred eEEEecCCeEEEEEecCeeeeeeC-Ccce-------------------eecCcccceeeEeeeeeEEE-eecC--Ccccc
Q 022993 6 GCIQVDQSTVAIKETFGKFDDVLE-PGCH-------------------CLPWCLGSQVAGQLSLRVQQ-LDVR--CETKT 62 (289)
Q Consensus 6 ~~~~V~~g~~~Vv~~fGk~~~~~~-pG~h-------------------~~~P~~~~~v~~~~~~r~~~-~~~~--~~v~T 62 (289)
|..+|.|++-++...-|++..+.. +|.+ |..|+ .+.| |.++++++. +... ..+.-
T Consensus 40 s~l~Vrp~qmamfvn~G~I~dvf~e~G~y~v~~~t~P~L~tlk~~kfgf~sp~-k~eV-yfvntqe~~girwGT~qpin~ 117 (345)
T COG4260 40 SILHVRPNQMAMFVNGGQIADVFAEAGYYKVTTQTLPSLFTLKRFKFGFESPF-KQEV-YFVNTQEIKGIRWGTPQPINY 117 (345)
T ss_pred cEEEEecCceEEEEcCCEEEeeecCCceeEeeecccchhhhhhcceecCCCcc-cceE-EEEecceecceecCCCCCeec
Confidence 788999999999999999987664 8865 12444 2333 678888766 4433 23333
Q ss_pred CC-----CcEEEEEEEEEEEEcccchh-------hhhccccChHHHHHHHHHHHHHHHcCCCC--HHHHHhhHHHHHHHH
Q 022993 63 KD-----NVFVNVVASVQYRALAEKAS-------DAFYKLSNTRSQIQAYVFDVIRASVPKLD--LDATFEQKNDIAKAV 128 (289)
Q Consensus 63 ~D-----~~~v~v~~~v~yrI~d~~~~-------~~~~~~~~~~~~l~~~~~~~lr~~i~~~~--~~~i~~~R~~i~~~v 128 (289)
.| .+++....+..|+|.||..+ +..|.+++.++++-+.+..+|...++++- +..+-++--+|++.+
T Consensus 118 ~dn~~~g~l~lRa~Gtys~kvtDpi~fi~~I~g~~dvy~v~di~~q~ls~~m~al~tai~q~G~~~~~ltan~~elsk~m 197 (345)
T COG4260 118 FDNFYNGELFLRAHGTYSIKVTDPILFIQQIPGNRDVYTVDDINQQYLSEFMGALATAINQSGVRFSFLTANQMELSKYM 197 (345)
T ss_pred ccccccceeEEeecceEEEEecCHHHHHHhccCCCceEEHHHHHHHHHHHHHHHHHHHHHhcCceehhhhhhHHHHHHHH
Confidence 33 57888899999999997432 22355667777787888888888777653 345556788999999
Q ss_pred HHHHHHHhcccCeEEEEEEEeecCCChHHHHHHHHHH
Q 022993 129 EEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEIN 165 (289)
Q Consensus 129 ~~~l~~~l~~~Gi~V~~v~I~~i~~p~~v~~a~~~~~ 165 (289)
.+.|.+.+..+|..|++|.|..|++|++.+..|+.+.
T Consensus 198 ~e~Ld~q~~q~Gm~v~sfqvaSisypde~Q~lin~r~ 234 (345)
T COG4260 198 AEVLDEQWTQYGMAVDSFQVASISYPDESQALINMRN 234 (345)
T ss_pred HHHHhHHHHhhCceEeeEEEEEecCcHHHHHHHHhhc
Confidence 9999999999999999999999999999999998654
No 28
>PTZ00491 major vault protein; Provisional
Probab=98.93 E-value=2.3e-07 Score=91.35 Aligned_cols=153 Identities=15% Similarity=0.145 Sum_probs=105.2
Q ss_pred EEEecCCeEEEEEec--CeeeeeeCCcceeecCcccceeeEeeeee------EEE-----eecC-------CccccCCCc
Q 022993 7 CIQVDQSTVAIKETF--GKFDDVLEPGCHCLPWCLGSQVAGQLSLR------VQQ-----LDVR-------CETKTKDNV 66 (289)
Q Consensus 7 ~~~V~~g~~~Vv~~f--Gk~~~~~~pG~h~~~P~~~~~v~~~~~~r------~~~-----~~~~-------~~v~T~D~~ 66 (289)
.|.||.+.+.=|+.+ ++-.-+.||-+.+.-|- .+ . ..+++. ... +.++ ..+-|+|..
T Consensus 464 ~~~vphn~avqvydyk~~~~Rvv~GP~~v~L~pd-E~-f-tvlsLSgg~PK~~n~i~~l~l~lGPdf~tD~i~vET~DhA 540 (850)
T PTZ00491 464 TYKVPHNAAVQLYDYKTKKSRVVFGPDLVMLEPD-EE-F-TVLSLSGGKPKVPNQIHSLHLFLGPDFMTDVIHVETSDHA 540 (850)
T ss_pred EEEcCCCcEEEEEEcccCceEEEECCceEEecCC-Cc-e-EEEEecCCCCCCcchhhhhhhhhCCccceeEEEEEEcccc
Confidence 356777776556543 44444789999888776 32 2 233321 111 1111 157999999
Q ss_pred EEEEEEEEEEEEc----ccchhhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHhhHHH-HHHHHHHHHHH-------
Q 022993 67 FVNVVASVQYRAL----AEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKND-IAKAVEEELEK------- 134 (289)
Q Consensus 67 ~v~v~~~v~yrI~----d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~-i~~~v~~~l~~------- 134 (289)
.+.+..+.+|+.. |+.....+|++.|+-.-+-..+.+.+|..+++.+.+++..+-.. |.+.|.....+
T Consensus 541 rL~l~LsYnW~F~v~~~d~~~~~k~Fsv~DFvGd~Ck~iaSrIR~aVA~~~Fd~FHknsa~iiR~aVFg~~~e~~~~r~~ 620 (850)
T PTZ00491 541 RLALQLSYNWYFDVTDGNPEDAQKCFSVPDFVGDACKTIASRVRAAVASEPFDEFHKNSAKIIRQAVFGSNDETGEVRDS 620 (850)
T ss_pred eEEEEEEEEEEEecCCCChhhHhheeccCchHHHHHHHHHHHHHHHHhcCCHHHHhccHHHHHHHHhccCcCCCCccccc
Confidence 9999999999987 44334678999999998999999999999999999999887433 34444431222
Q ss_pred -HhcccCeEEEEEEEeecCCCh-HHHHHHH
Q 022993 135 -AMSHYGYEIVQTLIVDIEPDE-HVKRAMN 162 (289)
Q Consensus 135 -~l~~~Gi~V~~v~I~~i~~p~-~v~~a~~ 162 (289)
.|...|+.|++|.|+++.|-+ ...+++.
T Consensus 621 l~F~~N~lvit~VDvqsvEpvD~~tr~~Lq 650 (850)
T PTZ00491 621 LRFPANNLVITNVDVQSVEPVDERTRDSLQ 650 (850)
T ss_pred eEEccCCeEEEEEeeeeeeecCHHHHHHHH
Confidence 235569999999999999854 4444444
No 29
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=97.39 E-value=0.0041 Score=54.07 Aligned_cols=104 Identities=20% Similarity=0.216 Sum_probs=76.2
Q ss_pred eeEEEeecCC-ccccCCCcEEEEEEEEEEEEcccchhhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHhhHHHHHHH
Q 022993 49 LRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKA 127 (289)
Q Consensus 49 ~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~~~ 127 (289)
.....++.|. ....+||..+.+.+.|..|-+= ..+.+....+..+.+.-++.+..+=+.-+..+++.+-+.|++.
T Consensus 122 VnPkVI~~P~i~aVAkdGIql~~kArVTVRaNi----~rLVGGAgEeTIiARVGEgIVttiGSa~~hk~VLEnPd~ISk~ 197 (316)
T PF12127_consen 122 VNPKVIDTPTIAAVAKDGIQLKVKARVTVRANI----DRLVGGAGEETIIARVGEGIVTTIGSAESHKEVLENPDSISKT 197 (316)
T ss_pred cCCeeecCcchhhhhcCCeEEEEEEEEEEEecH----HHhccCCCcHHHHHHHccceeeeeccchhHHHHhcCHHHHHHH
Confidence 3344455554 6688999999888888887752 2355555556677777777777777788889999999999988
Q ss_pred HHHHHHHHhcccCeEEEEEEEeecCCChHHH
Q 022993 128 VEEELEKAMSHYGYEIVQTLIVDIEPDEHVK 158 (289)
Q Consensus 128 v~~~l~~~l~~~Gi~V~~v~I~~i~~p~~v~ 158 (289)
+.+. ..-..--++|.|+.|-|++.-+.+-
T Consensus 198 VL~k--gLDagTAFeIlSIDIaDidVG~NIG 226 (316)
T PF12127_consen 198 VLEK--GLDAGTAFEILSIDIADIDVGENIG 226 (316)
T ss_pred HHhh--CCCcCceeEEEEeeeeccccchhhc
Confidence 8754 2223346999999999999887643
No 30
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=97.29 E-value=0.00095 Score=58.07 Aligned_cols=44 Identities=23% Similarity=0.243 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 022993 180 AEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSE 223 (289)
Q Consensus 180 ~~~~~~i~~A~aeaea~~~~Aea~a~a~~~~aea~a~~~~~~~~ 223 (289)
.++.+.+.+|+|++++.+++|++++++.++.|+|++++...-++
T Consensus 166 ~~~~a~~~~ae~~~~a~~~~aea~~~~~~~~Aea~a~a~~~~a~ 209 (242)
T cd03405 166 RERIAAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIRGE 209 (242)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444445566666666666666666666666666655444433
No 31
>PRK13665 hypothetical protein; Provisional
Probab=96.94 E-value=0.0085 Score=51.88 Aligned_cols=105 Identities=18% Similarity=0.216 Sum_probs=70.5
Q ss_pred eeeEEEeecCC-ccccCCCcEEEEEEEEEEEEcccchhhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHhhHHHHHH
Q 022993 48 SLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAK 126 (289)
Q Consensus 48 ~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~~ 126 (289)
+.....++.|. ....+||..+.+.+.+..|-+= ..+.+....+..+.+.-++.+..+=+.-+..+++.+-+.|++
T Consensus 126 SVnPkVI~~P~i~aVAkdGIql~~kARVTVRaNi----~rLVGGAgEeTIiARVGEgIVttIGSa~~hk~VLEnPd~ISk 201 (316)
T PRK13665 126 SVNPKVIETPFIAAVAKDGIEVKAKARVTVRANI----DRLVGGAGEETIIARVGEGIVSTIGSSESHKEVLENPDSISK 201 (316)
T ss_pred ccCCeeecCCcchhhcccCeEEEEEEEEEeehhH----HHHhCCCcceeeEeeecCceeecccCcchHHHHhcCHHHHHH
Confidence 33444555555 6788999999888888777431 123333333344445555566666677788899999999997
Q ss_pred HHHHHHHHHhcc-cCeEEEEEEEeecCCChHHHH
Q 022993 127 AVEEELEKAMSH-YGYEIVQTLIVDIEPDEHVKR 159 (289)
Q Consensus 127 ~v~~~l~~~l~~-~Gi~V~~v~I~~i~~p~~v~~ 159 (289)
.+.+ +-|+. --++|.|+.|-|++.-+.+-.
T Consensus 202 ~VL~---kGLDagTAFeIlSIDIADvdVG~NIGA 232 (316)
T PRK13665 202 TVLS---KGLDAGTAFEILSIDIADVDVGKNIGA 232 (316)
T ss_pred HHHh---ccCCcCceeEEEEEeeeccccchhhch
Confidence 7654 34443 369999999999998886443
No 32
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=96.70 E-value=0.0079 Score=54.64 Aligned_cols=41 Identities=17% Similarity=0.132 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Q 022993 174 ANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGL 214 (289)
Q Consensus 174 ~~~~Ae~~~~~~i~~A~aeaea~~~~Aea~a~a~~~~aea~ 214 (289)
+...+++++++..+.|+|++++.+++|+|+|++.++.+++.
T Consensus 237 ~~i~a~A~~e~~~~~aeA~a~a~~~~Aegea~a~~~~~~a~ 277 (317)
T TIGR01932 237 EEILGKAEYEVRKILSEAYRTARIIKGEGDAEAAKIYSDAY 277 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33334444444444444444445555555544444444443
No 33
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=96.61 E-value=0.011 Score=53.91 Aligned_cols=72 Identities=15% Similarity=0.234 Sum_probs=46.7
Q ss_pred EEEEeecCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 022993 145 QTLIVDIEPDE-HVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSE 223 (289)
Q Consensus 145 ~v~I~~i~~p~-~v~~a~~~~~~A~~~~~a~~~~Ae~~~~~~i~~A~aeaea~~~~Aea~a~a~~~~aea~a~~~~~~~~ 223 (289)
.+.|.++.+.+ .+=..+.+.+. ...+||.++.+...+|+|++++.+++|+|+.++.++.|+|.+++....++
T Consensus 202 GI~V~~V~i~~i~~P~~v~~ai~-------~~~~Aere~~a~~~~aege~~a~~~~a~A~~e~~~~~AeA~~~a~i~~ae 274 (334)
T PRK11029 202 GIEVVDVRIKQINLPTEVSDAIY-------NRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTLAEAERQGRIMRGE 274 (334)
T ss_pred CcEEEEEEEEecCCCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 35666666543 23333333322 22346666777778888888888888888888888888888776655544
No 34
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=96.50 E-value=0.027 Score=49.71 Aligned_cols=73 Identities=16% Similarity=0.152 Sum_probs=53.1
Q ss_pred EEEEeecCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 022993 145 QTLIVDIEPDE-HVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSE 223 (289)
Q Consensus 145 ~v~I~~i~~p~-~v~~a~~~~~~A~~~~~a~~~~Ae~~~~~~i~~A~aeaea~~~~Aea~a~a~~~~aea~a~~~~~~~~ 223 (289)
.+.|.++.+-+ ..-..+.+.+.+ ...|+.++++.+.+|++++++.+.+|+|+|++.++.|+|++++....++
T Consensus 161 Gi~v~~v~i~~i~~p~~i~~a~~~-------~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae 233 (266)
T cd03404 161 GIEIVGVNLQDADPPEEVQDAFDD-------VNKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQ 233 (266)
T ss_pred CeEEEEEEEEeCCCCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHH
Confidence 57788877653 333444444333 3345556667778899999999999999999999999999988777766
Q ss_pred c
Q 022993 224 N 224 (289)
Q Consensus 224 a 224 (289)
+
T Consensus 234 ~ 234 (266)
T cd03404 234 G 234 (266)
T ss_pred H
Confidence 4
No 35
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=96.44 E-value=0.012 Score=51.88 Aligned_cols=51 Identities=16% Similarity=0.174 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcC
Q 022993 175 NEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENV 225 (289)
Q Consensus 175 ~~~Ae~~~~~~i~~A~aeaea~~~~Aea~a~a~~~~aea~a~~~~~~~~a~ 225 (289)
...|+.++++.+.+|++++.+.+.+|+|+|++.+++|+|.+++....+++.
T Consensus 152 ~~~A~~~~~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~ 202 (262)
T cd03407 152 INAAQRQRVAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGL 202 (262)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 344666667777778888877888888888888888888888777777653
No 36
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=96.36 E-value=0.023 Score=50.08 Aligned_cols=78 Identities=13% Similarity=0.064 Sum_probs=53.0
Q ss_pred cccCeEEEEEEEeecCCChHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHH
Q 022993 137 SHYGYEIVQTLIVDIEPDEHVKRAMNEIN-------AAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQA 209 (289)
Q Consensus 137 ~~~Gi~V~~v~I~~i~~p~~v~~a~~~~~-------~A~~~~~a~~~~Ae~~~~~~i~~A~aeaea~~~~Aea~a~a~~~ 209 (289)
.=..+.|.++.+.+ ..-+.+.+.+.+.. +|+.+++..+.+|++++++.+..|+|.+++.+++|+|+|++..+
T Consensus 136 ~V~~v~I~~i~~p~-~v~~a~~~~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~a~g~a~~~~~ 214 (261)
T TIGR01933 136 TVTDVNFQSARPPE-EVKEAFDDVIIAREDEERYINEAEAYANEVVPKARGDAQRIIEEARGYKERRINRAKGDVARFTK 214 (261)
T ss_pred EEEEEEEEecCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 44467888887754 33333444444332 23333445566788888888899999999999999999999887
Q ss_pred HHHHHH
Q 022993 210 IVDGLR 215 (289)
Q Consensus 210 ~aea~a 215 (289)
.+++-.
T Consensus 215 ~~~ay~ 220 (261)
T TIGR01933 215 LLAEYK 220 (261)
T ss_pred HHHHHH
Confidence 777654
No 37
>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain []. This family includes two bacterial proteins A6FXE2 from SWISSPROT and A1ZGE7 from SWISSPROT. This suggests that some bacteria may possess vault particles. ; PDB: 2ZUO_G 2QZV_B 2ZV5_c 2ZV4_Y.
Probab=96.23 E-value=0.037 Score=42.04 Aligned_cols=96 Identities=11% Similarity=0.160 Sum_probs=69.3
Q ss_pred ccccCCCcEEEEEEEEEEEEcc----cchhhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHhhHHHHHHHHHHHHH-
Q 022993 59 ETKTKDNVFVNVVASVQYRALA----EKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELE- 133 (289)
Q Consensus 59 ~v~T~D~~~v~v~~~v~yrI~d----~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~~~v~~~l~- 133 (289)
.+-|+|...+.+..+.+|...- +.....+|++.|+-.-+-..+.+.+|..+++.+.++...+-..|-...-=...
T Consensus 10 ~VET~DhArL~L~LsYnw~F~v~~~~~~~~~k~F~VpDFVGd~Ck~iaSRIR~aVa~~~Fd~FHknSa~iiR~aVFg~~~ 89 (118)
T PF11978_consen 10 TVETADHARLQLQLSYNWHFDVDRKDPEDAAKLFSVPDFVGDACKAIASRIRGAVASVTFDDFHKNSARIIRQAVFGFDE 89 (118)
T ss_dssp EEE-TT-EEEEEEEEEEEEE--TTTHHHHHHHTTSSTTHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHSTS--
T ss_pred EEeecccceeeEEEEEEEEEecCCCChhHHHHhcCCcchHHHHHHHHHHHHHHHHhcCcHHHHcccHHHHHHHHhcCCCC
Confidence 5789999999999999998753 22235689999999888899999999999999999999874443222111111
Q ss_pred -------HHhcccCeEEEEEEEeecCCC
Q 022993 134 -------KAMSHYGYEIVQTLIVDIEPD 154 (289)
Q Consensus 134 -------~~l~~~Gi~V~~v~I~~i~~p 154 (289)
-.+...|+.|++|.|+++.|-
T Consensus 90 ~~~~r~~~~F~~N~LvIt~vDvqsvEpv 117 (118)
T PF11978_consen 90 NGEVRDGLRFPANNLVITSVDVQSVEPV 117 (118)
T ss_dssp -E--SS-EEETTTTEEEEEEEEEEEEES
T ss_pred CCCccceeEEcCCCeEEEEEeeeEeccC
Confidence 134456999999999998763
No 38
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=95.56 E-value=0.027 Score=48.76 Aligned_cols=50 Identities=28% Similarity=0.231 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Q 022993 165 NAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGL 214 (289)
Q Consensus 165 ~~A~~~~~a~~~~Ae~~~~~~i~~A~aeaea~~~~Aea~a~a~~~~aea~ 214 (289)
.++|-+|++++++|||+++..+...+|.+...+..|.|+|++....|++-
T Consensus 178 lesEger~~~InrAEGek~s~iL~seg~~~qr~n~a~Gea~ail~~A~a~ 227 (301)
T KOG2620|consen 178 LESEGERIAQINRAEGEKESKILASEGIARQRQNIADGEAEAILAFADAV 227 (301)
T ss_pred hhhhhhhHHhhhhhcchhhhHHhhhHHHHHHHHHHHhhHHHHHHHHhhcc
Confidence 34555666677777777777666666666666666666666666555543
No 39
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.23 E-value=0.48 Score=45.76 Aligned_cols=75 Identities=15% Similarity=0.107 Sum_probs=48.7
Q ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHHHHHHHHHhcc--------CCCcEEEe
Q 022993 189 AEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGAS--------SKTNSVFI 260 (289)
Q Consensus 189 A~aeaea~~~~Aea~a~a~~~~aea~a~~~~~~~~a~~~~~~~~~~~~~l~~~~le~l~~~~~~--------~~~~~i~l 260 (289)
++++++++..+++++|++.+.+|+|++++.+.+++++...+.... ..++...+++|..++++ .+.+++.+
T Consensus 411 ~~aea~a~~a~~~~~Aea~r~kG~AEAea~r~lAEa~~~~~~a~~--a~~~~~~vq~Lp~~~~~~~~~~~~i~~~kV~~i 488 (548)
T COG2268 411 AKAEAEAQAAEIKAEAEAIREKGKAEAEAKRALAEAIQVLGDAAA--AELFKALVQALPEVAEEAAQPMKNIDSEKVRVI 488 (548)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHH--HHHHHHHHHHHHHHHHHhhcccccccceeEEec
Confidence 445777888888888999999999999999999998875433311 12223445666555431 24556666
Q ss_pred cCCCC
Q 022993 261 PHGPG 265 (289)
Q Consensus 261 p~~~~ 265 (289)
|...+
T Consensus 489 ~~~~~ 493 (548)
T COG2268 489 GGANG 493 (548)
T ss_pred CCccc
Confidence 65433
No 40
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=94.95 E-value=0.19 Score=47.43 Aligned_cols=36 Identities=14% Similarity=0.059 Sum_probs=15.9
Q ss_pred HHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 022993 182 KILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDS 217 (289)
Q Consensus 182 ~~~~i~~A~aeaea~~~~Aea~a~a~~~~aea~a~~ 217 (289)
+++.+.+|++.+...+-+|+++|+.....|+|.+++
T Consensus 261 ~~~~i~eAeayan~iip~A~gea~~ii~~AeAyr~~ 296 (419)
T PRK10930 261 EQQYIREAEAYTNEVQPRANGQAQRILEEARAYKAQ 296 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444433
No 41
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=94.34 E-value=0.49 Score=38.43 Aligned_cols=80 Identities=8% Similarity=0.054 Sum_probs=63.1
Q ss_pred CcEEEEEEEEEEEEcccchhhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHh--hHHHHHHHHHHHHHHHhcccCeE
Q 022993 65 NVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFE--QKNDIAKAVEEELEKAMSHYGYE 142 (289)
Q Consensus 65 ~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~--~R~~i~~~v~~~l~~~l~~~Gi~ 142 (289)
+....+.+.+.|++.|...... + +.=.+.+++.+...+++.|.+++.+ .++++..++++.++..+..-+ .
T Consensus 76 ~~~~~v~i~i~l~~~n~~~~~e---l----~~~~p~vrd~li~lfsskt~~eL~t~~Gke~Lk~ei~~~in~~L~~g~-~ 147 (159)
T COG1580 76 PKDRYVKIAITLEVANKALLEE---L----EEKKPEVRDALLMLFSSKTAAELSTPEGKEKLKAEIKDRINTILKEGQ-V 147 (159)
T ss_pred CCcEEEEEEEEEeeCCHHHHHH---H----HHhhHHHHHHHHHHHHhCCHHHhcCchhHHHHHHHHHHHHHHHHhcCC-e
Confidence 6677888999999988432111 1 1124578889999999999999987 499999999999999998866 8
Q ss_pred EEEEEEeecC
Q 022993 143 IVQTLIVDIE 152 (289)
Q Consensus 143 V~~v~I~~i~ 152 (289)
|.+|.++++.
T Consensus 148 V~dV~fT~fi 157 (159)
T COG1580 148 VKDVLFTNFI 157 (159)
T ss_pred eEEEeeehhh
Confidence 8888887764
No 42
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=93.07 E-value=0.45 Score=42.48 Aligned_cols=50 Identities=24% Similarity=0.270 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 022993 174 ANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSEN 224 (289)
Q Consensus 174 ~~~~Ae~~~~~~i~~A~aeaea~~~~Aea~a~a~~~~aea~a~~~~~~~~a 224 (289)
....||.++++.+.+|++++++.+++|+|++++..+.++|.+++ +..+++
T Consensus 181 ~~~~Aer~~ra~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a-~~~~~a 230 (291)
T COG0330 181 KQMAAERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEAEA-EVIARA 230 (291)
T ss_pred HHHHHHHHHHHHHHHhHhHHhhhhhhhhhhHHHHHHHHHHHHHH-HHHHhh
Confidence 44557777788999999999999999999999999999999888 444444
No 43
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=89.15 E-value=1.3 Score=36.92 Aligned_cols=25 Identities=8% Similarity=-0.074 Sum_probs=19.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHH
Q 022993 193 AESKYLAGLGIARQRQAIVDGLRDS 217 (289)
Q Consensus 193 aea~~~~Aea~a~a~~~~aea~a~~ 217 (289)
++..+.+|+++|++.+++|+|++++
T Consensus 171 a~~~~~~a~~ea~~~~~~A~gea~a 195 (196)
T cd03401 171 AKFVVEKAEQEKQAAVIRAEGEAEA 195 (196)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 3345677888999999999998875
No 44
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=88.53 E-value=3 Score=35.19 Aligned_cols=49 Identities=18% Similarity=0.018 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHH
Q 022993 158 KRAMNEINAAAR--LRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQ 206 (289)
Q Consensus 158 ~~a~~~~~~A~~--~~~a~~~~Ae~~~~~~i~~A~aeaea~~~~Aea~a~a 206 (289)
.+.|......+. +...-+.+|+.++...+..|+.+++.....|+.+++.
T Consensus 9 ~dki~~~~~eeA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i~~kAe~ea~~ 59 (198)
T PRK01558 9 INKIKKDGLEEAERLANEIILEAKEEAEEIIAKAEEEAKELKAKAEKEAND 59 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443333 3333455555566666666666666665555555443
No 45
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=87.47 E-value=8.1 Score=32.54 Aligned_cols=40 Identities=25% Similarity=0.077 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHH
Q 022993 176 EKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLR 215 (289)
Q Consensus 176 ~~Ae~~~~~~i~~A~aeaea~~~~Aea~a~a~~~~aea~a 215 (289)
.+|+.++...+..|+.+|+..+.+|+.+|+.....|+.++
T Consensus 18 eeA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i~~kAe~ea 57 (198)
T PRK01558 18 EEAERLANEIILEAKEEAEEIIAKAEEEAKELKAKAEKEA 57 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555544444443
No 46
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=87.25 E-value=7 Score=33.22 Aligned_cols=42 Identities=21% Similarity=0.012 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHH
Q 022993 170 LRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIV 211 (289)
Q Consensus 170 ~~~a~~~~Ae~~~~~~i~~A~aeaea~~~~Aea~a~a~~~~a 211 (289)
+.+..+.+|+.++...+..|+.+++..+..|+.+++..+.++
T Consensus 28 eA~~Il~eAk~~Ae~Ii~eA~~EAe~ii~~A~~eae~ek~r~ 69 (207)
T PRK01005 28 EAGAIVHNAKEQAKRIIAEAQEEAEKIIRSAEETADQKLKQG 69 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555656666666666666666666665555444333
No 47
>PLN03086 PRLI-interacting factor K; Provisional
Probab=86.95 E-value=1.6 Score=42.61 Aligned_cols=23 Identities=9% Similarity=0.364 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEecC
Q 022993 237 VLVTQYFDTMKEIGASSKTNSVFIPH 262 (289)
Q Consensus 237 ~l~~~~le~l~~~~~~~~~~~i~lp~ 262 (289)
+.+.+.|+++... +++..|+||+
T Consensus 76 ~~~~~~~~~~~~~---~~GdKI~LPp 98 (567)
T PLN03086 76 IVFSRIFEAVSFQ---GNGDKIKLPP 98 (567)
T ss_pred eEEEEEeeccccC---CCCCeEEcCH
Confidence 3444556666555 5788999995
No 48
>COG4864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.79 E-value=11 Score=32.25 Aligned_cols=92 Identities=16% Similarity=0.189 Sum_probs=53.8
Q ss_pred ccCCCcEEEEEEEEEEEEcccchhhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHhhHHHHHHHHHHHHHHHhc-cc
Q 022993 61 KTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMS-HY 139 (289)
Q Consensus 61 ~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~~~v~~~l~~~l~-~~ 139 (289)
..-||..|.....+..|-+ ..+ +.+....+..+...-++.+..+=++-.-.+++.+-+.|++.+.+ +-|+ ..
T Consensus 139 vam~gievkakaritvran---i~r-lvggageetviarvgegivstigss~~h~~vlenpd~isktvl~---kgld~gt 211 (328)
T COG4864 139 VAMNGIEVKAKARITVRAN---IER-LVGGAGEETVIARVGEGIVSTIGSSDEHTKVLENPDSISKTVLE---KGLDSGT 211 (328)
T ss_pred eeccceEEEEEEEEEehhh---HHH-HhCCCCchhhhhhhccceeeccCCCcchhhHhcCccHHHHHHHH---ccCCCCc
Confidence 3446665555544443332 122 33333334444444444444444556667889999999887764 2232 33
Q ss_pred CeEEEEEEEeecCCChHHHH
Q 022993 140 GYEIVQTLIVDIEPDEHVKR 159 (289)
Q Consensus 140 Gi~V~~v~I~~i~~p~~v~~ 159 (289)
-++|.++.|-|++..+.+-.
T Consensus 212 afeilsidiadvdigkniga 231 (328)
T COG4864 212 AFEILSIDIADVDIGKNIGA 231 (328)
T ss_pred eeEEEEeeeecccccccccc
Confidence 68999999999998876543
No 49
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=86.66 E-value=2.6 Score=38.26 Aligned_cols=84 Identities=23% Similarity=0.175 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHHHHHHHHHhc---
Q 022993 175 NEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGA--- 251 (289)
Q Consensus 175 ~~~Ae~~~~~~i~~A~aeaea~~~~Aea~a~a~~~~aea~a~~~~~~~~a~~~~~~~~~~~~~l~~~~le~l~~~~~--- 251 (289)
...||+++...+..|++||+..+.+.+|||.+..+.|.+++++..+-++++.. ..++ ......|++|..++.
T Consensus 295 ~klaEAnk~~~~~qaqAEA~~irk~geAEA~~ieA~akaeaeqm~~ka~v~~~--y~~a---a~l~~lLealp~Ia~~ia 369 (428)
T KOG2668|consen 295 TKLAEANKELYNKQAQAEAELIRKQGEAEAFAIEADAKAEAEQMAAKAEVYQA--YAQA---AYLRTLLEALPMIAAEIA 369 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHH--hhhh---HHHHHHHHHHHHHHHHhc
Confidence 34567777777888888888888888888888888888888877777776653 2222 223447888887754
Q ss_pred ---cCCCcEEEecCC
Q 022993 252 ---SSKTNSVFIPHG 263 (289)
Q Consensus 252 ---~~~~~~i~lp~~ 263 (289)
++-+++.++..+
T Consensus 370 ~plaktnkI~v~s~g 384 (428)
T KOG2668|consen 370 APLAKTNKISVWSHG 384 (428)
T ss_pred cchhhcCeEEEEecC
Confidence 233455566654
No 50
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=84.29 E-value=7.8 Score=32.94 Aligned_cols=28 Identities=29% Similarity=0.238 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 022993 174 ANEKAEAEKILQIKRAEGEAESKYLAGL 201 (289)
Q Consensus 174 ~~~~Ae~~~~~~i~~A~aeaea~~~~Ae 201 (289)
.+.+|+.++...+..|+.+++..+.+++
T Consensus 43 Ii~eA~~EAe~ii~~A~~eae~ek~r~~ 70 (207)
T PRK01005 43 IIAEAQEEAEKIIRSAEETADQKLKQGE 70 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443333
No 51
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=83.98 E-value=2.5 Score=35.75 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=13.8
Q ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHH
Q 022993 188 RAEGEAESKYLAGLGIARQRQAIVDGL 214 (289)
Q Consensus 188 ~A~aeaea~~~~Aea~a~a~~~~aea~ 214 (289)
.|+.++++.+.+|+|++++.+++++|+
T Consensus 155 ~A~~~~~a~i~~A~ge~~a~~~~aea~ 181 (215)
T cd03403 155 EAEREKRAKIIEAEGERQAAILLAEAA 181 (215)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344445555555555555555554444
No 52
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=83.53 E-value=14 Score=30.72 Aligned_cols=84 Identities=13% Similarity=0.173 Sum_probs=57.8
Q ss_pred ccccCCC--cEEEEEEEEEEEEcccchhhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHhhHHHHHHHHHHHHHHHh
Q 022993 59 ETKTKDN--VFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAM 136 (289)
Q Consensus 59 ~v~T~D~--~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~~~v~~~l~~~l 136 (289)
.+.+.|. ...-+..++.|...++.+..-+ +.=.+.++..+...+++++.+|+- ++.++.+++++.++..+
T Consensus 92 ~vNLaD~~~~r~~vki~l~~e~~d~~l~~EL-------~~r~pqIRD~Ii~~LssKt~~eL~-Gk~~LKeEI~~rIN~iL 163 (181)
T PRK06654 92 RGNTADTPPKTFVVKLALGYAENNKNILNEL-------GRRKVRLKDIIREYFSQKTGQELK-NESQIKAEIKARINSIL 163 (181)
T ss_pred EEEcCCCCCceEEEEEEEEEEcCCHHHHHHH-------HhccHHHHHHHHHHHHhCCHHHHc-CHHHHHHHHHHHHHHhc
Confidence 4555665 3444677777777664321111 122447778889999999999999 99999999999999888
Q ss_pred cccCeEEEEEEEeecC
Q 022993 137 SHYGYEIVQTLIVDIE 152 (289)
Q Consensus 137 ~~~Gi~V~~v~I~~i~ 152 (289)
.+- .|.+|.++++.
T Consensus 164 ~~G--kV~~VYFTeFv 177 (181)
T PRK06654 164 RNG--EIKDIAFTQID 177 (181)
T ss_pred CCC--ceEEEEEEEEE
Confidence 753 36666666543
No 53
>PRK05697 flagellar basal body-associated protein FliL-like protein; Validated
Probab=82.83 E-value=9.4 Score=30.19 Aligned_cols=54 Identities=9% Similarity=0.167 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHcCCCCHHHHHh--hHHHHHHHHHHHHHHHhccc-C-eEEEEEEEeec
Q 022993 98 QAYVFDVIRASVPKLDLDATFE--QKNDIAKAVEEELEKAMSHY-G-YEIVQTLIVDI 151 (289)
Q Consensus 98 ~~~~~~~lr~~i~~~~~~~i~~--~R~~i~~~v~~~l~~~l~~~-G-i~V~~v~I~~i 151 (289)
.+.+++.+-..+++.+.+++.+ +|+.+.+++.+.++..+.+. | -.|++|.++++
T Consensus 77 ~P~IRd~ii~lLs~~t~~eL~t~eGke~Lr~eil~~in~~L~~~~g~~~V~~VlFT~F 134 (137)
T PRK05697 77 DPLIRNALVELLGQQTEDKVKSLTGREEIRQECLKQVNELLEQETGKPLVVDLLFTKY 134 (137)
T ss_pred CHHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHHhhccCCCceeEEeeeee
Confidence 3578888999999999999966 59999999999999999754 3 24788887765
No 54
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=82.73 E-value=14 Score=29.93 Aligned_cols=54 Identities=9% Similarity=0.076 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHcCCCCHHHHHh--hHHHHHHHHHHHHHHHhcccC--eEEEEEEEeec
Q 022993 98 QAYVFDVIRASVPKLDLDATFE--QKNDIAKAVEEELEKAMSHYG--YEIVQTLIVDI 151 (289)
Q Consensus 98 ~~~~~~~lr~~i~~~~~~~i~~--~R~~i~~~v~~~l~~~l~~~G--i~V~~v~I~~i 151 (289)
.+.+++.+-..+++.+.+++.+ +++.+.+++++.++..+..-+ -.|.+|.++++
T Consensus 102 ~p~IRd~ii~~Ls~k~~~~L~~~eGk~~Lk~ei~~~in~~l~~~~~~~~V~~VlFt~f 159 (162)
T PRK07021 102 LPEVRSRLLLLLSRKHAAELATEEGKQKLAAEIKQTLSQPLVPGQPPQVVTDVLFTAF 159 (162)
T ss_pred CHHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHhccCCCCceeEEeeeec
Confidence 3467788888899999999966 599999999999999886542 35788877765
No 55
>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis []. FliL is a cytoplasmic membrane protein associated with the basal body [].; GO: 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009425 bacterial-type flagellum basal body
Probab=82.63 E-value=16 Score=26.54 Aligned_cols=52 Identities=10% Similarity=0.178 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHcCCCCHHHHHh--hHHHHHHHHHHHHHHHhcccCeEEEEEEEeec
Q 022993 98 QAYVFDVIRASVPKLDLDATFE--QKNDIAKAVEEELEKAMSHYGYEIVQTLIVDI 151 (289)
Q Consensus 98 ~~~~~~~lr~~i~~~~~~~i~~--~R~~i~~~v~~~l~~~l~~~Gi~V~~v~I~~i 151 (289)
.+.+++.+...+++++.+++-+ +++.+.+++++.+++.+.+- .|.+|.++++
T Consensus 43 ~~~ird~ii~~l~~~~~~~l~~~~g~~~Lk~~l~~~in~~l~~~--~V~~V~ft~f 96 (99)
T PF03748_consen 43 MPRIRDAIISYLSSKTAEDLSGPEGKERLKDELKDRINKILGKG--KVKDVYFTDF 96 (99)
T ss_pred cHHHHHHHHHHHHcCCHHHhcChhhHHHHHHHHHHHHHHhhccC--cEEEEEEEEE
Confidence 3478888999999999999975 59999999999999988543 3777777664
No 56
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=81.86 E-value=9.9 Score=31.53 Aligned_cols=38 Identities=24% Similarity=0.132 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 022993 161 MNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYL 198 (289)
Q Consensus 161 ~~~~~~A~~~~~a~~~~Ae~~~~~~i~~A~aeaea~~~ 198 (289)
+-..+..+-++++....++++++...+.+++++++..+
T Consensus 6 i~~~I~~~a~~e~~~I~~ea~~~~~~i~~ea~~~a~~i 43 (188)
T PRK02292 6 VVEDIRDEARARASEIRAEADEEAEEIIAEAEADAEEI 43 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444443333
No 57
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]
Probab=81.79 E-value=1.9 Score=36.69 Aligned_cols=31 Identities=23% Similarity=0.072 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 022993 163 EINAAARLRLAANEKAEAEKILQIKRAEGEA 193 (289)
Q Consensus 163 ~~~~A~~~~~a~~~~Ae~~~~~~i~~A~aea 193 (289)
-+..|+|+|.+++..|||+.++....+.+-+
T Consensus 199 vVeKAeQqk~aavIsAEGds~aA~li~~sla 229 (271)
T KOG3083|consen 199 VVEKAEQQKKAAVISAEGDSKAAELIANSLA 229 (271)
T ss_pred HHHHHhhhhhhheeecccchHHHHHHHHHHh
Confidence 3456666666666666666665544444443
No 58
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=81.15 E-value=4.9 Score=31.98 Aligned_cols=51 Identities=12% Similarity=0.254 Sum_probs=42.6
Q ss_pred HHHHHHHHHHcCCCCHHHHHh--hHHHHHHHHHHHHHHHhcccCeEEEEEEEeec
Q 022993 99 AYVFDVIRASVPKLDLDATFE--QKNDIAKAVEEELEKAMSHYGYEIVQTLIVDI 151 (289)
Q Consensus 99 ~~~~~~lr~~i~~~~~~~i~~--~R~~i~~~v~~~l~~~l~~~Gi~V~~v~I~~i 151 (289)
+.+++.+-..+++.+.+++-+ +|+.+.+++.+.++..+.+ | .|.+|.++++
T Consensus 87 p~Ird~ii~~L~~~~~~~l~~~~G~~~Lr~el~~~in~~l~~-g-~V~~Vyft~f 139 (142)
T PRK07718 87 FQVKNIIIEELADMNAEDFKGKKGLEALKEQLKEKINNLMQE-G-KVEKVYITSF 139 (142)
T ss_pred hhhHHHHHHHHHcCCHHHhcChhHHHHHHHHHHHHHHHhhcc-C-ceEEEEEEee
Confidence 367788888999999999976 5999999999999988876 4 5888877765
No 59
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=79.57 E-value=14 Score=30.18 Aligned_cols=52 Identities=10% Similarity=0.102 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHcCCCCHHHHHh--hHHHHHHHHHHHHHHHhcccCeEEEEEEEeec
Q 022993 98 QAYVFDVIRASVPKLDLDATFE--QKNDIAKAVEEELEKAMSHYGYEIVQTLIVDI 151 (289)
Q Consensus 98 ~~~~~~~lr~~i~~~~~~~i~~--~R~~i~~~v~~~l~~~l~~~Gi~V~~v~I~~i 151 (289)
.+.+++.+-..+++.+.+++.+ ++..+.+++.+.++..+.+- .|++|.++++
T Consensus 110 ~p~Ird~i~~~Ls~~~~~~L~~~~Gk~~Lr~ei~~~in~~l~~~--~V~~VlFt~F 163 (166)
T PRK12785 110 MPRVTDAFQTYLRELRPSDLNGSAGLFRLKEELLRRVNVALAPA--QVNAVLFKEV 163 (166)
T ss_pred chHHHHHHHHHHHhCCHHHhcChHHHHHHHHHHHHHHHhhcCCC--ceeEEEEEee
Confidence 4567778888899999999976 59999999999999988763 3888888765
No 60
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=79.21 E-value=24 Score=26.37 Aligned_cols=35 Identities=31% Similarity=0.295 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 022993 160 AMNEINAAARLRLAANEKAEAEKILQIKRAEGEAE 194 (289)
Q Consensus 160 a~~~~~~A~~~~~a~~~~Ae~~~~~~i~~A~aeae 194 (289)
.+...-.|+.+.+.....|+.++...+..|+.+++
T Consensus 4 ~i~~ik~aE~~~e~~L~~A~~Ea~~Ii~~Ak~~A~ 38 (103)
T PRK08404 4 VIKEIVKAEKEAEERIEKAKEEAKKIIRKAKEEAK 38 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555554444444443
No 61
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=79.18 E-value=16 Score=27.86 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 022993 160 AMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLA 199 (289)
Q Consensus 160 a~~~~~~A~~~~~a~~~~Ae~~~~~~i~~A~aeaea~~~~ 199 (289)
-|..-+.|+++...-+..|+.++...+..|+.||+.-+..
T Consensus 7 GIQ~LL~AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~~ 46 (113)
T TIGR01147 7 GIQQLLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEK 46 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777777777777777777777777665543
No 62
>PRK04057 30S ribosomal protein S3Ae; Validated
Probab=78.24 E-value=22 Score=30.11 Aligned_cols=83 Identities=16% Similarity=0.203 Sum_probs=58.4
Q ss_pred CccccCCCcEEEEEEEEEEEEcccchhhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHhh--HHHHHHHHHHHHHHH
Q 022993 58 CETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ--KNDIAKAVEEELEKA 135 (289)
Q Consensus 58 ~~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~--R~~i~~~v~~~l~~~ 135 (289)
.++.|+||..+.+-..+.-+-. --.+-...|+......+...++.+++++++.. -+.|+.++....+..
T Consensus 100 vdvkTkDGy~lRv~~i~~T~~r---------a~~sq~~~IRk~m~~~i~~~~~~~~~~e~V~~~i~g~i~~eI~~~~k~I 170 (203)
T PRK04057 100 VDVTTKDGYKVRVKPVALTTKR---------ARTSQKHAIRKIMEEIIEEKASELTFEEFVQEIVFGKLASEIYKEAKKI 170 (203)
T ss_pred EEEEcCCCCEEEEEEEEEEchh---------hhhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccchHHHHHHHhhhhc
Confidence 4779999988877776532211 01223467899999999999999999999976 577777777776665
Q ss_pred hcccCeEEEEEEEe
Q 022993 136 MSHYGYEIVQTLIV 149 (289)
Q Consensus 136 l~~~Gi~V~~v~I~ 149 (289)
.--.-++|..+.+.
T Consensus 171 yPlr~veIrKvkvl 184 (203)
T PRK04057 171 YPLRRVEIRKSKVL 184 (203)
T ss_pred cCcceEEEEEEEEE
Confidence 44445666666553
No 63
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=77.88 E-value=25 Score=28.39 Aligned_cols=12 Identities=42% Similarity=0.927 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHH
Q 022993 236 MVLVTQYFDTMK 247 (289)
Q Consensus 236 ~~l~~~~le~l~ 247 (289)
..+..+|++..+
T Consensus 129 v~iAsk~~~~~~ 140 (154)
T PRK06568 129 IKLVSEYFQSVK 140 (154)
T ss_pred HHHHHHHHHHhc
Confidence 455566766554
No 64
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=77.41 E-value=18 Score=27.07 Aligned_cols=28 Identities=25% Similarity=0.063 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhHHH
Q 022993 178 AEAEKILQIKRAEGEAESKYLAGLGIAR 205 (289)
Q Consensus 178 Ae~~~~~~i~~A~aeaea~~~~Aea~a~ 205 (289)
|+......+..|+.+++..+..|+.+.+
T Consensus 37 A~k~~~eii~eA~~eA~~ile~Ak~eie 64 (103)
T PRK08404 37 AKKIEEEIIKKAEEEAQKLIEKKKKEGE 64 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455555555555554444433
No 65
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=76.92 E-value=30 Score=28.28 Aligned_cols=55 Identities=7% Similarity=0.146 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHh--hHHHHHHHHHHHHHHHhccc-C-eEEEEEEEeec
Q 022993 97 IQAYVFDVIRASVPKLDLDATFE--QKNDIAKAVEEELEKAMSHY-G-YEIVQTLIVDI 151 (289)
Q Consensus 97 l~~~~~~~lr~~i~~~~~~~i~~--~R~~i~~~v~~~l~~~l~~~-G-i~V~~v~I~~i 151 (289)
-.+.+++.+-.++++.+.+++-+ +++.+.+++.+.++..++.. | -.|.+|.++++
T Consensus 109 ~~p~IRd~i~~~Ls~k~~~~L~~~~gk~~Lr~el~~~i~~~l~~~~g~~~V~~VlFt~f 167 (170)
T PRK05696 109 HIPLIESALLMTFSSATVDQLSTPAGKEELRQKALASVQETLQKVTGKPVVEKVLFTGF 167 (170)
T ss_pred hhHHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCceeEEeeeec
Confidence 34578889999999999999976 58999999998888887654 3 25778877765
No 66
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=76.52 E-value=31 Score=28.66 Aligned_cols=53 Identities=13% Similarity=0.213 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHh--hHHHHHHHHHHHHHHHhcccCeEEEEEEEeec
Q 022993 97 IQAYVFDVIRASVPKLDLDATFE--QKNDIAKAVEEELEKAMSHYGYEIVQTLIVDI 151 (289)
Q Consensus 97 l~~~~~~~lr~~i~~~~~~~i~~--~R~~i~~~v~~~l~~~l~~~Gi~V~~v~I~~i 151 (289)
-.+.+++.+-.++++.+.+++.+ .|+.+.+++.+.++..+.+ | .|.+|.++++
T Consensus 125 ~~p~IRD~ii~~Ls~kt~~dL~t~~Gk~~Lk~ei~~~iN~~L~~-g-~V~~VyFT~F 179 (182)
T PRK08455 125 KDPVIRDIIIRILSSKTVEEVSTNKGKERLKDEIVGKLNEFLID-G-FIKNVFFTDF 179 (182)
T ss_pred hhhHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHhcc-C-ceeEEEeEee
Confidence 34568888899999999999976 4999999999999999976 3 5777777765
No 67
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=75.77 E-value=32 Score=25.98 Aligned_cols=42 Identities=26% Similarity=0.124 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 022993 160 AMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGL 201 (289)
Q Consensus 160 a~~~~~~A~~~~~a~~~~Ae~~~~~~i~~A~aeaea~~~~Ae 201 (289)
.+...-.|+......+.+|+-++...+..|+.++...+..|+
T Consensus 8 vl~eIk~aE~~ad~~IeeAkEe~~~~i~eAr~eareiieeaE 49 (108)
T COG2811 8 VLREIKKAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAE 49 (108)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555544444443
No 68
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=74.79 E-value=12 Score=27.92 Aligned_cols=42 Identities=21% Similarity=0.187 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhh
Q 022993 161 MNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLG 202 (289)
Q Consensus 161 ~~~~~~A~~~~~a~~~~Ae~~~~~~i~~A~aeaea~~~~Aea 202 (289)
|.....|+.+....+.+|+.++...+..|+.+|+..+.....
T Consensus 6 Iq~Ll~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~~~r~ 47 (105)
T PF03179_consen 6 IQQLLEAEKEAQEIVEEARKEREQRLKQAKEEAEKEIEEFRA 47 (105)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666666666666655544433
No 69
>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=72.49 E-value=9.8 Score=32.58 Aligned_cols=64 Identities=31% Similarity=0.270 Sum_probs=47.2
Q ss_pred CeEEEEEEEeecCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHH
Q 022993 140 GYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIAR 205 (289)
Q Consensus 140 Gi~V~~v~I~~i~~p~~v~~a~~~~~~A~~~~~a~~~~Ae~~~~~~i~~A~aeaea~~~~Aea~a~ 205 (289)
-+.|+.+.+. -.+...+...--..++|+|.+ =-..+|+.+++..+.+|+|||+++....+|.+.
T Consensus 178 DVSiT~l~F~-~efTaAiEaKQvA~QeAqRA~-F~VekA~qek~~~ivrAqGEaksAqliGeAi~n 241 (290)
T KOG3090|consen 178 DVSITELTFG-KEFTAAIEAKQVAAQEAQRAK-FIVEKAEQEKQSAIVRAQGEAKSAQLIGEAIKN 241 (290)
T ss_pred cceeeeeecC-HHHHHHHHHHHHHHHHHhhhh-hhhHHHHHhhhhhhhhhccchHHHHHHHHHHhC
Confidence 3667777764 567777766666667777654 234567888899999999999999998887653
No 70
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=72.14 E-value=60 Score=27.47 Aligned_cols=8 Identities=0% Similarity=0.164 Sum_probs=3.5
Q ss_pred HHHHHhhH
Q 022993 114 LDATFEQK 121 (289)
Q Consensus 114 ~~~i~~~R 121 (289)
+..++.+|
T Consensus 73 i~~~L~~R 80 (205)
T PRK06231 73 TQRFLNKR 80 (205)
T ss_pred HHHHHHHH
Confidence 44444443
No 71
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=70.97 E-value=44 Score=25.48 Aligned_cols=39 Identities=10% Similarity=0.040 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHH
Q 022993 172 LAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAI 210 (289)
Q Consensus 172 ~a~~~~Ae~~~~~~i~~A~aeaea~~~~Aea~a~a~~~~ 210 (289)
......||.++...+..|+......+.+|+.+|+..+..
T Consensus 8 IQ~LL~AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~~ 46 (113)
T TIGR01147 8 IQQLLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEK 46 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777788888877777777777777666543
No 72
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=69.36 E-value=26 Score=26.06 Aligned_cols=42 Identities=17% Similarity=0.026 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHH
Q 022993 174 ANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLR 215 (289)
Q Consensus 174 ~~~~Ae~~~~~~i~~A~aeaea~~~~Aea~a~a~~~~aea~a 215 (289)
.+..||.++...+..|+.++...+..|+.+|+..+.......
T Consensus 8 ~Ll~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~~~r~~~ 49 (105)
T PF03179_consen 8 QLLEAEKEAQEIVEEARKEREQRLKQAKEEAEKEIEEFRAEA 49 (105)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777888888888777777777776655444443
No 73
>PRK09098 type III secretion system protein HrpB; Validated
Probab=68.77 E-value=27 Score=30.29 Aligned_cols=36 Identities=25% Similarity=0.087 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHH
Q 022993 171 RLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQ 206 (289)
Q Consensus 171 ~~a~~~~Ae~~~~~~i~~A~aeaea~~~~Aea~a~a 206 (289)
++.-+.+|+.+++..+..|+.+|+..+..|+.+.+.
T Consensus 41 ~~~ila~Ar~~A~~Il~~A~~~A~~I~~~A~~e~e~ 76 (233)
T PRK09098 41 RDAVLAAARARAERIVAEARAQAEAILEAARREADR 76 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666667777777777777777777654433
No 74
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=68.69 E-value=48 Score=27.00 Aligned_cols=34 Identities=12% Similarity=-0.057 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHH
Q 022993 174 ANEKAEAEKILQIKRAEGEAESKYLAGLGIARQR 207 (289)
Q Consensus 174 ~~~~Ae~~~~~~i~~A~aeaea~~~~Aea~a~a~ 207 (289)
+..+|+..+...+.+|+.+++..+.+|+...+..
T Consensus 97 A~~eAe~~~~~ii~~A~~ea~~~~~~a~~~ie~E 130 (167)
T PRK08475 97 AKKEAYILTQKIEKQTKDDIENLIKSFEELMEFE 130 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555555555444333
No 75
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=68.62 E-value=50 Score=26.50 Aligned_cols=6 Identities=0% Similarity=0.113 Sum_probs=2.5
Q ss_pred HHHHhh
Q 022993 115 DATFEQ 120 (289)
Q Consensus 115 ~~i~~~ 120 (289)
..++..
T Consensus 48 ~~~l~~ 53 (156)
T CHL00118 48 LKVLDE 53 (156)
T ss_pred HHHHHH
Confidence 344444
No 76
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=68.16 E-value=64 Score=26.25 Aligned_cols=9 Identities=11% Similarity=0.390 Sum_probs=4.1
Q ss_pred CHHHHHhhH
Q 022993 113 DLDATFEQK 121 (289)
Q Consensus 113 ~~~~i~~~R 121 (289)
++..++.+|
T Consensus 46 Pi~~~l~~R 54 (167)
T PRK08475 46 PLKNFYKSR 54 (167)
T ss_pred HHHHHHHHH
Confidence 344445443
No 77
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=67.76 E-value=75 Score=26.87 Aligned_cols=9 Identities=11% Similarity=-0.056 Sum_probs=3.9
Q ss_pred HHHHHHHHh
Q 022993 242 YFDTMKEIG 250 (289)
Q Consensus 242 ~le~l~~~~ 250 (289)
-++.-.+++
T Consensus 172 Av~iA~kiL 180 (205)
T PRK06231 172 AMLAAEELI 180 (205)
T ss_pred HHHHHHHHH
Confidence 344444444
No 78
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=65.77 E-value=76 Score=26.21 Aligned_cols=11 Identities=9% Similarity=0.371 Sum_probs=6.2
Q ss_pred CHHHHHhhHHH
Q 022993 113 DLDATFEQKND 123 (289)
Q Consensus 113 ~~~~i~~~R~~ 123 (289)
++..++.+|..
T Consensus 55 PI~~~l~~R~~ 65 (181)
T PRK13454 55 RIGAVLAERQG 65 (181)
T ss_pred HHHHHHHHHHH
Confidence 45666666543
No 79
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=64.58 E-value=30 Score=28.91 Aligned_cols=28 Identities=25% Similarity=0.145 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 022993 171 RLAANEKAEAEKILQIKRAEGEAESKYL 198 (289)
Q Consensus 171 ~~a~~~~Ae~~~~~~i~~A~aeaea~~~ 198 (289)
.+.-+..|+.+++..+..|+.+++..+.
T Consensus 32 a~~IL~~A~~qA~~Il~~Ae~eAe~l~~ 59 (191)
T PF06188_consen 32 AREILEDARQQAEQILQQAEEEAEALLE 59 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566666666666665555
No 80
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=64.01 E-value=70 Score=25.21 Aligned_cols=9 Identities=11% Similarity=0.165 Sum_probs=4.5
Q ss_pred CHHHHHhhH
Q 022993 113 DLDATFEQK 121 (289)
Q Consensus 113 ~~~~i~~~R 121 (289)
++..++.+|
T Consensus 31 Pi~~~l~~R 39 (141)
T PRK08476 31 PLLKFMDNR 39 (141)
T ss_pred HHHHHHHHH
Confidence 344555554
No 81
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=63.70 E-value=69 Score=25.64 Aligned_cols=9 Identities=11% Similarity=0.475 Sum_probs=4.7
Q ss_pred CHHHHHhhH
Q 022993 113 DLDATFEQK 121 (289)
Q Consensus 113 ~~~~i~~~R 121 (289)
++..++..|
T Consensus 29 pi~~~l~~R 37 (159)
T PRK13461 29 KIKAVIDSR 37 (159)
T ss_pred HHHHHHHHH
Confidence 455555554
No 82
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=63.63 E-value=77 Score=25.53 Aligned_cols=19 Identities=5% Similarity=0.212 Sum_probs=9.1
Q ss_pred CCHHHHHhhHH-HHHHHHHH
Q 022993 112 LDLDATFEQKN-DIAKAVEE 130 (289)
Q Consensus 112 ~~~~~i~~~R~-~i~~~v~~ 130 (289)
-++..++..|. .|...+.+
T Consensus 31 kpi~~~l~~R~~~I~~~l~~ 50 (164)
T PRK14473 31 RPVLNLLNERTRRIEESLRD 50 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556666643 34444433
No 83
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=63.62 E-value=77 Score=25.53 Aligned_cols=16 Identities=13% Similarity=0.339 Sum_probs=7.1
Q ss_pred CHHHHHhhH-HHHHHHH
Q 022993 113 DLDATFEQK-NDIAKAV 128 (289)
Q Consensus 113 ~~~~i~~~R-~~i~~~v 128 (289)
++..++.+| +.|...+
T Consensus 32 pi~~~l~~R~~~I~~~l 48 (164)
T PRK14471 32 PILGAVKEREDSIKNAL 48 (164)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 344555554 3344333
No 84
>PF01015 Ribosomal_S3Ae: Ribosomal S3Ae family; InterPro: IPR001593 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of proteins that have from 220 to 250 amino acids and represents Rps1 (eukaryotic) and Rps3Ae (archaeal and eukaryotic).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_4 2XZM_4 3U5C_B 3U5G_B.
Probab=63.32 E-value=39 Score=28.41 Aligned_cols=79 Identities=20% Similarity=0.274 Sum_probs=50.3
Q ss_pred ccccCCCcEEEEEEEEEEEEcccchhhhhcccc-ChHHHHHHHHHHHHHHHcCCCCHHHHHhh--HHHHHHHHHHHHHHH
Q 022993 59 ETKTKDNVFVNVVASVQYRALAEKASDAFYKLS-NTRSQIQAYVFDVIRASVPKLDLDATFEQ--KNDIAKAVEEELEKA 135 (289)
Q Consensus 59 ~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~-~~~~~l~~~~~~~lr~~i~~~~~~~i~~~--R~~i~~~v~~~l~~~ 135 (289)
++.|+||..+.+-..+.=+=. .. .-...|+......+.+.++.+++++++.. -+.++.+|....+..
T Consensus 107 dvkT~DGy~lRvf~i~fT~~r----------a~~sq~~~IRk~m~~ii~~~~~~~~~~e~V~~li~~~i~~eI~k~~k~I 176 (194)
T PF01015_consen 107 DVKTKDGYLLRVFCIAFTKKR----------AKSSQIKAIRKKMVEIITEEASELDLKELVKKLIPGSIGKEIEKACKKI 176 (194)
T ss_dssp EEEETTTEEEEEEEEEEE--------------TCHHHHHHHHHHHHHHHHHCCTSHHHHHHHHHCTTHHHHHHHHHHCTT
T ss_pred EEEcCCCcEEEEEEEEEEeec----------ccchHHHHHHHHHHHHHHHHhccCcHHHHHHHHccchHHHHHHHHhccc
Confidence 678999987766555421110 11 22357899999999999999999999976 566777766665544
Q ss_pred hcccCeEEEEEE
Q 022993 136 MSHYGYEIVQTL 147 (289)
Q Consensus 136 l~~~Gi~V~~v~ 147 (289)
.--.-++|.-+.
T Consensus 177 yPl~~v~IrKvK 188 (194)
T PF01015_consen 177 YPLRNVEIRKVK 188 (194)
T ss_dssp --EEEEEEEEEE
T ss_pred cccceEEEEEEE
Confidence 332234444333
No 85
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=63.09 E-value=82 Score=25.68 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=12.2
Q ss_pred cCCCCHHHHHhhH-HHHHHHHHH
Q 022993 109 VPKLDLDATFEQK-NDIAKAVEE 130 (289)
Q Consensus 109 i~~~~~~~i~~~R-~~i~~~v~~ 130 (289)
+.-.++..++.+| ..|...+.+
T Consensus 39 fl~kpI~~~l~~R~~~I~~~l~~ 61 (174)
T PRK07352 39 FGRGFLGKILEERREAILQALKE 61 (174)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444577777775 445444443
No 86
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=62.98 E-value=36 Score=25.72 Aligned_cols=29 Identities=31% Similarity=0.164 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 022993 166 AAARLRLAANEKAEAEKILQIKRAEGEAE 194 (289)
Q Consensus 166 ~A~~~~~a~~~~Ae~~~~~~i~~A~aeae 194 (289)
.|+.++...+..|+.++...+..|+.+++
T Consensus 25 eAkEe~~~~i~eAr~eareiieeaE~eA~ 53 (108)
T COG2811 25 EAKEEAEQIIKEAREEAREIIEEAEEEAE 53 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666666665555555554
No 87
>COG1890 RPS1A Ribosomal protein S3AE [Translation, ribosomal structure and biogenesis]
Probab=62.84 E-value=77 Score=26.93 Aligned_cols=85 Identities=24% Similarity=0.354 Sum_probs=59.5
Q ss_pred eecCCccccCCCcEEEEEEEEE--EEEcccchhhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHhh--HHHHHHHHH
Q 022993 54 LDVRCETKTKDNVFVNVVASVQ--YRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ--KNDIAKAVE 129 (289)
Q Consensus 54 ~~~~~~v~T~D~~~v~v~~~v~--yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~--R~~i~~~v~ 129 (289)
++...+|.|+||..+.|.+.+. +|+. ..-...|+......+.+..+..++++++.. -+.+..+|.
T Consensus 104 Idai~dVkTkDGy~~RV~~~~~T~~ra~-----------tSqk~aIRk~M~eii~~~a~e~~f~~fv~~li~g~i~~~I~ 172 (214)
T COG1890 104 IDAIVDVKTKDGYVLRVKAMAFTRRRAK-----------TSQKRAIRKIMFEIIEEKASELTFEEFVQELIPGRIAAEIE 172 (214)
T ss_pred eeeEEEEEecCCcEEEEEEEEEEehhcc-----------cchHHHHHHHHHHHHHHHhccCCHHHHHHHHhhhhHHHHHH
Confidence 3444589999999888877653 2221 123467999999999999999999999875 567777777
Q ss_pred HHHHHHhcccCeEEEEEEEe
Q 022993 130 EELEKAMSHYGYEIVQTLIV 149 (289)
Q Consensus 130 ~~l~~~l~~~Gi~V~~v~I~ 149 (289)
+..+...==.-++|..+.+.
T Consensus 173 ~~akkIyPLr~veIrK~kvl 192 (214)
T COG1890 173 EAAKKIYPLRKVEIRKSKVL 192 (214)
T ss_pred HHhhhcccchheEEEeeeee
Confidence 66554433335666666654
No 88
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=62.68 E-value=87 Score=25.81 Aligned_cols=14 Identities=0% Similarity=0.022 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHhh
Q 022993 267 VKDIASQIREGLLQ 280 (289)
Q Consensus 267 ~~~~~~~~~~~~~~ 280 (289)
-..+.+.+...+++
T Consensus 168 ~~~lid~~i~~l~~ 181 (184)
T PRK13455 168 ANALIDEAIKEVEA 181 (184)
T ss_pred HHHHHHHHHHHHhh
Confidence 34555555555543
No 89
>PRK09098 type III secretion system protein HrpB; Validated
Probab=62.39 E-value=29 Score=30.01 Aligned_cols=25 Identities=20% Similarity=0.126 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHH
Q 022993 172 LAANEKAEAEKILQIKRAEGEAESK 196 (289)
Q Consensus 172 ~a~~~~Ae~~~~~~i~~A~aeaea~ 196 (289)
+.-+.+|+.++...+..|+.+.+..
T Consensus 53 ~~Il~~A~~~A~~I~~~A~~e~e~~ 77 (233)
T PRK09098 53 ERIVAEARAQAEAILEAARREADRS 77 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555544443
No 90
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=61.94 E-value=48 Score=23.62 Aligned_cols=27 Identities=30% Similarity=0.203 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 022993 168 ARLRLAANEKAEAEKILQIKRAEGEAE 194 (289)
Q Consensus 168 ~~~~~a~~~~Ae~~~~~~i~~A~aeae 194 (289)
+.+.+..+..|+.++...+..|+.+++
T Consensus 8 e~~~~~~l~~A~~ea~~Ii~~A~~~A~ 34 (85)
T TIGR02926 8 EEDAEELIEEAEEERKQRIAEAREEAR 34 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444443
No 91
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=61.68 E-value=1.1e+02 Score=26.59 Aligned_cols=37 Identities=30% Similarity=0.232 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHH
Q 022993 173 AANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQA 209 (289)
Q Consensus 173 a~~~~Ae~~~~~~i~~A~aeaea~~~~Aea~a~a~~~ 209 (289)
.+..+|+..+...+..|+.++++.+..|+.+.+..+.
T Consensus 79 ~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~ 115 (246)
T TIGR03321 79 KAKEEAQAERQRLLDEAREEADEIREKWQEALRREQA 115 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666777777777766666665544443
No 92
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=61.55 E-value=83 Score=25.20 Aligned_cols=30 Identities=27% Similarity=0.150 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhHH
Q 022993 175 NEKAEAEKILQIKRAEGEAESKYLAGLGIA 204 (289)
Q Consensus 175 ~~~Ae~~~~~~i~~A~aeaea~~~~Aea~a 204 (289)
...|+.++...+..|+.+++..+.++..++
T Consensus 63 L~~A~~ea~~ii~~A~~~a~~~~~~a~~~a 92 (159)
T PRK09173 63 RKEAEKEAADIVAAAEREAEALTAEAKRKT 92 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555554444444333
No 93
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=61.03 E-value=90 Score=25.45 Aligned_cols=18 Identities=0% Similarity=0.180 Sum_probs=9.5
Q ss_pred CCHHHHHhhH-HHHHHHHH
Q 022993 112 LDLDATFEQK-NDIAKAVE 129 (289)
Q Consensus 112 ~~~~~i~~~R-~~i~~~v~ 129 (289)
-++..++.+| +.|...+.
T Consensus 39 kpi~~~l~~R~~~I~~~l~ 57 (173)
T PRK13460 39 DVILKALDERASGVQNDIN 57 (173)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4466667765 33444443
No 94
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=60.99 E-value=77 Score=26.13 Aligned_cols=23 Identities=13% Similarity=0.218 Sum_probs=13.3
Q ss_pred cCCCCHHHHHhhH-HHHHHHHHHH
Q 022993 109 VPKLDLDATFEQK-NDIAKAVEEE 131 (289)
Q Consensus 109 i~~~~~~~i~~~R-~~i~~~v~~~ 131 (289)
++--++..++..| ..|...+.+.
T Consensus 44 fl~kPI~~~l~~R~~~I~~~l~~A 67 (184)
T CHL00019 44 FGKGVLSDLLDNRKQTILNTIRNS 67 (184)
T ss_pred HhHhHHHHHHHHHHHHHHHHHHHH
Confidence 3446677788775 4455555443
No 95
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=60.80 E-value=18 Score=32.28 Aligned_cols=74 Identities=18% Similarity=0.153 Sum_probs=44.4
Q ss_pred HHHHHHHHHhcccCeE-EEEEEEeecCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhHHHHH
Q 022993 127 AVEEELEKAMSHYGYE-IVQTLIVDIEPD-EHVKRAMNEINAAARLRLAANEKAEAEKI--------LQIKRAEGEAESK 196 (289)
Q Consensus 127 ~v~~~l~~~l~~~Gi~-V~~v~I~~i~~p-~~v~~a~~~~~~A~~~~~a~~~~Ae~~~~--------~~i~~A~aeaea~ 196 (289)
.+...+.+.+.+.=-. =..+.|.++.+- .+.=+.+.+.+ + +.+||.++. +....||++..+.
T Consensus 125 ~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~P~~V~~af--e------rM~aER~k~~~~~~~~~~~~~~ae~~~~~~ 196 (280)
T cd03406 125 QIDENLKLALQKDLTRMAPGLEIQAVRVTKPKIPEAIRRNY--E------LMEAEKTKLLIAIQKQKVVEKEAETERKKA 196 (280)
T ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEEEEecCCCHHHHHHH--H------HHHHHHHhhhhccchhHHHHHHhhHHHHHH
Confidence 5555555555543111 127788888764 33444444432 1 233444444 7788899999999
Q ss_pred HHhhhhHHHHHH
Q 022993 197 YLAGLGIARQRQ 208 (289)
Q Consensus 197 ~~~Aea~a~a~~ 208 (289)
+++|+++|+-..
T Consensus 197 ~~~a~~~~~~~~ 208 (280)
T cd03406 197 VIEAEKVAQVAK 208 (280)
T ss_pred HHHHHHHhhHHH
Confidence 999998876543
No 96
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=60.52 E-value=1e+02 Score=26.02 Aligned_cols=18 Identities=17% Similarity=0.473 Sum_probs=9.7
Q ss_pred CHHHHHhhH-HHHHHHHHH
Q 022993 113 DLDATFEQK-NDIAKAVEE 130 (289)
Q Consensus 113 ~~~~i~~~R-~~i~~~v~~ 130 (289)
++..++.+| +.|...+.+
T Consensus 77 pI~~vLe~R~~~I~~~L~~ 95 (204)
T PRK09174 77 RIGGIIETRRDRIAQDLDQ 95 (204)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 456667765 445544443
No 97
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=60.07 E-value=91 Score=25.18 Aligned_cols=17 Identities=12% Similarity=0.104 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHhhHHH
Q 022993 178 AEAEKILQIKRAEGEAE 194 (289)
Q Consensus 178 Ae~~~~~~i~~A~aeae 194 (289)
|+.++...+..|+.+++
T Consensus 68 Ar~EA~~Ii~~A~~~a~ 84 (154)
T PRK06568 68 LETLRSQMIEESNEVTK 84 (154)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 98
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=59.91 E-value=1.6e+02 Score=28.21 Aligned_cols=15 Identities=13% Similarity=0.452 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHh
Q 022993 236 MVLVTQYFDTMKEIG 250 (289)
Q Consensus 236 ~~l~~~~le~l~~~~ 250 (289)
..+..++++.+..+.
T Consensus 144 ~~lId~~i~~l~~~~ 158 (445)
T PRK13428 144 SATVDRFLDELDAMA 158 (445)
T ss_pred HHHHHHHHHHhhccC
Confidence 455577887777764
No 99
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=59.86 E-value=73 Score=27.68 Aligned_cols=34 Identities=12% Similarity=-0.114 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 022993 168 ARLRLAANEKAEAEKILQIKRAEGEAESKYLAGL 201 (289)
Q Consensus 168 ~~~~~a~~~~Ae~~~~~~i~~A~aeaea~~~~Ae 201 (289)
++.++..+.+|+.+....+..|+.+.+..+..+.
T Consensus 85 ~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a~ 118 (246)
T TIGR03321 85 QAERQRLLDEAREEADEIREKWQEALRREQAALS 118 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555555544444443
No 100
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=59.82 E-value=1.1e+02 Score=29.22 Aligned_cols=18 Identities=6% Similarity=0.268 Sum_probs=9.4
Q ss_pred CHHHHHhhH-HHHHHHHHH
Q 022993 113 DLDATFEQK-NDIAKAVEE 130 (289)
Q Consensus 113 ~~~~i~~~R-~~i~~~v~~ 130 (289)
++..++..| +.|...+.+
T Consensus 25 Pi~~~l~~R~~~I~~~L~e 43 (445)
T PRK13428 25 PVRRLMAARQDTVRQQLAE 43 (445)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 355666664 445544444
No 101
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=59.82 E-value=89 Score=25.01 Aligned_cols=16 Identities=19% Similarity=0.225 Sum_probs=6.2
Q ss_pred HHHHhhHHHHHHHhhh
Q 022993 186 IKRAEGEAESKYLAGL 201 (289)
Q Consensus 186 i~~A~aeaea~~~~Ae 201 (289)
+..|+.++...+..|+
T Consensus 83 L~~A~~ea~~ii~~A~ 98 (156)
T CHL00118 83 LSKARKEAQLEITQSQ 98 (156)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444433333333
No 102
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=59.75 E-value=91 Score=25.10 Aligned_cols=8 Identities=13% Similarity=-0.213 Sum_probs=3.1
Q ss_pred HHHHHHHh
Q 022993 243 FDTMKEIG 250 (289)
Q Consensus 243 le~l~~~~ 250 (289)
++...+++
T Consensus 133 ~~~a~kil 140 (164)
T PRK14473 133 TLTASRVL 140 (164)
T ss_pred HHHHHHHH
Confidence 33334443
No 103
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=58.18 E-value=89 Score=24.51 Aligned_cols=6 Identities=17% Similarity=0.036 Sum_probs=2.2
Q ss_pred HHHHHH
Q 022993 244 DTMKEI 249 (289)
Q Consensus 244 e~l~~~ 249 (289)
+....+
T Consensus 121 ~~a~kl 126 (147)
T TIGR01144 121 LGAEKI 126 (147)
T ss_pred HHHHHH
Confidence 333333
No 104
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=57.97 E-value=98 Score=24.91 Aligned_cols=9 Identities=0% Similarity=0.028 Sum_probs=4.0
Q ss_pred HHHHHHHHh
Q 022993 242 YFDTMKEIG 250 (289)
Q Consensus 242 ~le~l~~~~ 250 (289)
-++..++++
T Consensus 132 a~~~a~kil 140 (164)
T PRK14471 132 SVEIAEKVL 140 (164)
T ss_pred HHHHHHHHH
Confidence 344444444
No 105
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=55.73 E-value=1.4e+02 Score=26.05 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHH
Q 022993 174 ANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQ 208 (289)
Q Consensus 174 ~~~~Ae~~~~~~i~~A~aeaea~~~~Aea~a~a~~ 208 (289)
+..+|+.++...+..|+.++++.+..++.+.+..+
T Consensus 80 A~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek 114 (250)
T PRK14474 80 AQEAADEQRQHLLNEAREDVATARDEWLEQLEREK 114 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666677777666666665544433
No 106
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=53.90 E-value=1.1e+02 Score=24.24 Aligned_cols=7 Identities=14% Similarity=0.349 Sum_probs=2.9
Q ss_pred HHHHHhh
Q 022993 114 LDATFEQ 120 (289)
Q Consensus 114 ~~~i~~~ 120 (289)
+..++.+
T Consensus 29 i~~~l~~ 35 (156)
T PRK05759 29 IMKALEE 35 (156)
T ss_pred HHHHHHH
Confidence 3344444
No 107
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=53.59 E-value=1.2e+02 Score=24.68 Aligned_cols=17 Identities=12% Similarity=0.286 Sum_probs=8.5
Q ss_pred CCHHHHHhhHH-HHHHHH
Q 022993 112 LDLDATFEQKN-DIAKAV 128 (289)
Q Consensus 112 ~~~~~i~~~R~-~i~~~v 128 (289)
-++..++.+|. .|...+
T Consensus 41 kpi~~~l~~R~~~I~~~l 58 (175)
T PRK14472 41 GPILSALEEREKGIQSSI 58 (175)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 34566666643 344443
No 108
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=53.37 E-value=1.2e+02 Score=24.66 Aligned_cols=9 Identities=11% Similarity=-0.053 Sum_probs=3.8
Q ss_pred HHHHHHHHh
Q 022993 242 YFDTMKEIG 250 (289)
Q Consensus 242 ~le~l~~~~ 250 (289)
-++..++++
T Consensus 142 A~~~a~kil 150 (175)
T PRK14472 142 AVKGAEKII 150 (175)
T ss_pred HHHHHHHHH
Confidence 344444444
No 109
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=53.13 E-value=1.2e+02 Score=24.53 Aligned_cols=16 Identities=13% Similarity=0.320 Sum_probs=7.6
Q ss_pred HHHHHhhH-HHHHHHHH
Q 022993 114 LDATFEQK-NDIAKAVE 129 (289)
Q Consensus 114 ~~~i~~~R-~~i~~~v~ 129 (289)
+..++..| +.|...+.
T Consensus 35 i~~~le~R~~~I~~~l~ 51 (167)
T PRK14475 35 LAGALDAYAAKIQAELD 51 (167)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45556654 33444443
No 110
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=51.40 E-value=1.5e+02 Score=26.14 Aligned_cols=28 Identities=18% Similarity=0.004 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 022993 173 AANEKAEAEKILQIKRAEGEAESKYLAG 200 (289)
Q Consensus 173 a~~~~Ae~~~~~~i~~A~aeaea~~~~A 200 (289)
.-+.+|+.+.+..+..|+.+++..+.+|
T Consensus 92 ~~l~~a~~q~e~~~~ea~~e~e~~~~~a 119 (281)
T PRK06669 92 SIIEKLQMQIEREQEEWEEELERLIEEA 119 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444333
No 111
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=51.31 E-value=1.3e+02 Score=24.46 Aligned_cols=18 Identities=17% Similarity=0.466 Sum_probs=9.2
Q ss_pred CCHHHHHhhHH-HHHHHHH
Q 022993 112 LDLDATFEQKN-DIAKAVE 129 (289)
Q Consensus 112 ~~~~~i~~~R~-~i~~~v~ 129 (289)
-++..++..|. .|...+.
T Consensus 41 ~pi~~~l~~R~~~I~~~l~ 59 (173)
T PRK13453 41 GPLKDVMDKRERDINRDID 59 (173)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 44566666653 3444443
No 112
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=49.57 E-value=1.4e+02 Score=24.17 Aligned_cols=9 Identities=0% Similarity=-0.141 Sum_probs=4.4
Q ss_pred HHHHHHHHh
Q 022993 242 YFDTMKEIG 250 (289)
Q Consensus 242 ~le~l~~~~ 250 (289)
-++.-.+++
T Consensus 134 Av~~A~kil 142 (167)
T PRK14475 134 AAQAAETVL 142 (167)
T ss_pred HHHHHHHHH
Confidence 444455554
No 113
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=49.28 E-value=1.4e+02 Score=24.26 Aligned_cols=8 Identities=0% Similarity=-0.213 Sum_probs=3.1
Q ss_pred HHHHHHHh
Q 022993 243 FDTMKEIG 250 (289)
Q Consensus 243 le~l~~~~ 250 (289)
++...+++
T Consensus 143 ~~~a~kll 150 (173)
T PRK13453 143 VLIASKVL 150 (173)
T ss_pred HHHHHHHH
Confidence 33334443
No 114
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=49.14 E-value=1.5e+02 Score=24.50 Aligned_cols=10 Identities=10% Similarity=0.228 Sum_probs=4.2
Q ss_pred EEecCCCCcH
Q 022993 258 VFIPHGPGAV 267 (289)
Q Consensus 258 i~lp~~~~~~ 267 (289)
+++-.++.+.
T Consensus 122 i~i~~~~~D~ 131 (198)
T PRK03963 122 VVVRSNERTL 131 (198)
T ss_pred EEEEEccccH
Confidence 4443344444
No 115
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=48.46 E-value=1.5e+02 Score=24.15 Aligned_cols=7 Identities=0% Similarity=-0.225 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 022993 269 DIASQIR 275 (289)
Q Consensus 269 ~~~~~~~ 275 (289)
.+.+.+.
T Consensus 159 ~lid~~i 165 (173)
T PRK13460 159 AFIETEL 165 (173)
T ss_pred HHHHHHH
Confidence 4444433
No 116
>PTZ00491 major vault protein; Provisional
Probab=47.76 E-value=90 Score=32.20 Aligned_cols=10 Identities=10% Similarity=-0.064 Sum_probs=6.1
Q ss_pred EEEEEEEEcc
Q 022993 71 VASVQYRALA 80 (289)
Q Consensus 71 ~~~v~yrI~d 80 (289)
++...|.|.|
T Consensus 561 ~~~k~Fsv~D 570 (850)
T PTZ00491 561 DAQKCFSVPD 570 (850)
T ss_pred hHhheeccCc
Confidence 4455677766
No 117
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=46.95 E-value=1.3e+02 Score=23.24 Aligned_cols=7 Identities=14% Similarity=0.330 Sum_probs=3.1
Q ss_pred HHHHHhh
Q 022993 114 LDATFEQ 120 (289)
Q Consensus 114 ~~~i~~~ 120 (289)
+..++.+
T Consensus 30 i~~~l~~ 36 (140)
T PRK07353 30 VGKVVEE 36 (140)
T ss_pred HHHHHHH
Confidence 3444444
No 118
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=46.59 E-value=1.5e+02 Score=23.67 Aligned_cols=22 Identities=32% Similarity=0.134 Sum_probs=9.8
Q ss_pred HHHHHhhHHHHHHHhhhhHHHH
Q 022993 185 QIKRAEGEAESKYLAGLGIARQ 206 (289)
Q Consensus 185 ~i~~A~aeaea~~~~Aea~a~a 206 (289)
.+..|+.++...+..|+.+++.
T Consensus 62 ~L~~A~~ea~~ii~~A~~~a~~ 83 (159)
T PRK09173 62 KRKEAEKEAADIVAAAEREAEA 83 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 119
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=45.13 E-value=1.8e+02 Score=24.23 Aligned_cols=27 Identities=19% Similarity=0.089 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 022993 166 AAARLRLAANEKAEAEKILQIKRAEGE 192 (289)
Q Consensus 166 ~A~~~~~a~~~~Ae~~~~~~i~~A~ae 192 (289)
.|+++.+.-+.+|+.+++..+..|+.+
T Consensus 38 ~A~~qA~~Il~~Ae~eAe~l~~~a~e~ 64 (191)
T PF06188_consen 38 DARQQAEQILQQAEEEAEALLEQAYEQ 64 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555666655555533333
No 120
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=42.51 E-value=1.6e+02 Score=25.73 Aligned_cols=17 Identities=47% Similarity=0.483 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHhhHHH
Q 022993 178 AEAEKILQIKRAEGEAE 194 (289)
Q Consensus 178 Ae~~~~~~i~~A~aeae 194 (289)
|+.++...+..|+.+++
T Consensus 49 Ar~eA~~Ii~~A~~~a~ 65 (255)
T TIGR03825 49 AEAEAAQIIEQAEAQAA 65 (255)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 121
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=42.46 E-value=2.3e+02 Score=24.70 Aligned_cols=26 Identities=8% Similarity=-0.109 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHH
Q 022993 173 AANEKAEAEKILQIKRAEGEAESKYL 198 (289)
Q Consensus 173 a~~~~Ae~~~~~~i~~A~aeaea~~~ 198 (289)
....+|+.+....+..++.+.+..+.
T Consensus 90 ~il~~A~~ea~~~~~~a~~~ie~Ek~ 115 (250)
T PRK14474 90 HLLNEAREDVATARDEWLEQLEREKQ 115 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433333
No 122
>PRK15322 invasion protein OrgB; Provisional
Probab=41.26 E-value=2.2e+02 Score=24.11 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 022993 173 AANEKAEAEKILQIKRAEGEAESKYLAGL 201 (289)
Q Consensus 173 a~~~~Ae~~~~~~i~~A~aeaea~~~~Ae 201 (289)
.-+.+|+.++...+..|+.|+|+.+..|.
T Consensus 16 ~l~~qA~~kA~~ii~qA~~eaE~ir~~A~ 44 (210)
T PRK15322 16 RLEQQARRRAKRILRQAEEEAETLRMYAY 44 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666667777777777766664
No 123
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=39.23 E-value=2e+02 Score=22.96 Aligned_cols=9 Identities=0% Similarity=-0.466 Sum_probs=3.7
Q ss_pred HHHHHHHHh
Q 022993 242 YFDTMKEIG 250 (289)
Q Consensus 242 ~le~l~~~~ 250 (289)
-++...+++
T Consensus 129 A~~~a~kil 137 (159)
T PRK13461 129 AVLLSSKAL 137 (159)
T ss_pred HHHHHHHHH
Confidence 334444443
No 124
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=38.43 E-value=2.1e+02 Score=23.10 Aligned_cols=9 Identities=22% Similarity=0.486 Sum_probs=3.4
Q ss_pred HHHHhhHHH
Q 022993 186 IKRAEGEAE 194 (289)
Q Consensus 186 i~~A~aeae 194 (289)
+..|+.++.
T Consensus 71 L~~Ar~eA~ 79 (155)
T PRK06569 71 IDKTNTEID 79 (155)
T ss_pred HHHHHHHHH
Confidence 333333333
No 125
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=38.42 E-value=3.3e+02 Score=26.10 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=11.7
Q ss_pred HHHHHhhHHHHHHHhhhhHHH
Q 022993 185 QIKRAEGEAESKYLAGLGIAR 205 (289)
Q Consensus 185 ~i~~A~aeaea~~~~Aea~a~ 205 (289)
...+|++|.|-++.+|.|+++
T Consensus 208 E~erae~EretiRvkA~Aeae 228 (630)
T KOG0742|consen 208 EMERAEAERETIRVKAKAEAE 228 (630)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 345566666655555555554
No 126
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=37.98 E-value=1.9e+02 Score=22.38 Aligned_cols=15 Identities=13% Similarity=0.173 Sum_probs=5.9
Q ss_pred HHHHhhHHHHHHHhh
Q 022993 186 IKRAEGEAESKYLAG 200 (289)
Q Consensus 186 i~~A~aeaea~~~~A 200 (289)
+..|+.++...+..|
T Consensus 66 L~~a~~ea~~i~~~a 80 (140)
T PRK07353 66 LASARKQAQAVIAEA 80 (140)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444443333333
No 127
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=36.83 E-value=3.7e+02 Score=27.18 Aligned_cols=36 Identities=17% Similarity=0.307 Sum_probs=20.9
Q ss_pred HHHHHH-HhcccCeEEEEEE----EeecCCChHHHHHHHHH
Q 022993 129 EEELEK-AMSHYGYEIVQTL----IVDIEPDEHVKRAMNEI 164 (289)
Q Consensus 129 ~~~l~~-~l~~~Gi~V~~v~----I~~i~~p~~v~~a~~~~ 164 (289)
-+.|.+ .|...||.|++-. +-....|+++....+++
T Consensus 520 ~D~iRd~~L~~~Gi~l~D~~~g~~~~~~~~~~~~~~~~~~~ 560 (651)
T PTZ00399 520 CDKLRDEWLPNLGIRIEDKPDGPSVWKLDDKEELQREKEEK 560 (651)
T ss_pred HHHHHHHHHHHCCCEEEEcCCCceEEEECCHHHHHHHHHHH
Confidence 455666 5888899999842 22233445555444433
No 128
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=36.34 E-value=2.1e+02 Score=22.52 Aligned_cols=7 Identities=14% Similarity=-0.002 Sum_probs=2.7
Q ss_pred HHHHHHh
Q 022993 244 DTMKEIG 250 (289)
Q Consensus 244 e~l~~~~ 250 (289)
+...+++
T Consensus 130 ~~a~k~l 136 (156)
T PRK05759 130 AGAEKIL 136 (156)
T ss_pred HHHHHHH
Confidence 3333433
No 129
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=34.70 E-value=2.8e+02 Score=23.29 Aligned_cols=9 Identities=0% Similarity=0.398 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 022993 241 QYFDTMKEI 249 (289)
Q Consensus 241 ~~le~l~~~ 249 (289)
.-.+.+.+.
T Consensus 109 ll~~~~~~~ 117 (194)
T COG1390 109 LLIEALEKL 117 (194)
T ss_pred HHHHHHHhc
Confidence 334444444
No 130
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=34.18 E-value=2.6e+02 Score=22.90 Aligned_cols=18 Identities=17% Similarity=0.412 Sum_probs=10.2
Q ss_pred CHHHHHhhH-HHHHHHHHH
Q 022993 113 DLDATFEQK-NDIAKAVEE 130 (289)
Q Consensus 113 ~~~~i~~~R-~~i~~~v~~ 130 (289)
.+..++.+| +.|...+.+
T Consensus 51 ~v~~~L~~R~~~I~~~l~~ 69 (184)
T PRK13455 51 MIGGMLDKRAEGIRSELEE 69 (184)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 357777775 445544443
No 131
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=33.36 E-value=2.1e+02 Score=21.42 Aligned_cols=20 Identities=20% Similarity=0.159 Sum_probs=13.9
Q ss_pred EEeecCCChHHHHHHHHHHH
Q 022993 147 LIVDIEPDEHVKRAMNEINA 166 (289)
Q Consensus 147 ~I~~i~~p~~v~~a~~~~~~ 166 (289)
......+|+++...+...+.
T Consensus 53 ~~~~~~lP~~l~~~~~~~~~ 72 (120)
T PF11740_consen 53 SEAAPDLPEALQDALAELMA 72 (120)
T ss_pred cccccCCChhHHHHHHHHHH
Confidence 34566789999887776553
No 132
>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only]
Probab=32.66 E-value=81 Score=24.90 Aligned_cols=71 Identities=13% Similarity=0.149 Sum_probs=39.6
Q ss_pred ccCCCcEEE---EEEEEEEEEcccchhhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHhhHHHHHHHHHHHHHHHhc
Q 022993 61 KTKDNVFVN---VVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMS 137 (289)
Q Consensus 61 ~T~D~~~v~---v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~~~v~~~l~~~l~ 137 (289)
+|..|..=+ ..+.|.||+.+|.+ .+ .+.+. +-..+++|.++.++..|.+++.+..-.=-+...
T Consensus 81 LTe~GKTKTanftTG~v~WR~rpPSv--~v---rgvea---------V~e~L~rmgf~rFiRTk~EinKeAiLnepe~~k 146 (170)
T COG4396 81 LTENGKTKTANFTTGLVKWRIRPPSV--KV---RGVEA---------VLEWLSRMGFARFIRTKKEINKEAILNEPEFSK 146 (170)
T ss_pred HhcCCCceeeeeeeeeEEEeecCCcc--ee---ccHHH---------HHHHHHHhhHHHHHHhHHHhcHHHHhCChhhhc
Confidence 454444333 35679999999743 22 22222 333455778888888888887764322122222
Q ss_pred cc-CeEEEE
Q 022993 138 HY-GYEIVQ 145 (289)
Q Consensus 138 ~~-Gi~V~~ 145 (289)
.. ||.|.+
T Consensus 147 GiaGiki~~ 155 (170)
T COG4396 147 GIAGIKIVS 155 (170)
T ss_pred CCCceeeec
Confidence 22 666643
No 133
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=32.59 E-value=2.4e+02 Score=24.86 Aligned_cols=36 Identities=11% Similarity=-0.125 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHH
Q 022993 173 AANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQ 208 (289)
Q Consensus 173 a~~~~Ae~~~~~~i~~A~aeaea~~~~Aea~a~a~~ 208 (289)
....++..++...+..|+.+++....+|+.+++..+
T Consensus 81 ~~l~~~~~ea~~~l~~a~~q~e~~~~ea~~e~e~~~ 116 (281)
T PRK06669 81 EELLKKTDEASSIIEKLQMQIEREQEEWEEELERLI 116 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666667777777777776666655544
No 134
>COG1464 NlpA ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]
Probab=31.39 E-value=96 Score=27.44 Aligned_cols=39 Identities=15% Similarity=0.319 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHhccCCCcEEEecCCCCcHHHHHHHHHH
Q 022993 235 DMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIRE 276 (289)
Q Consensus 235 ~~~l~~~~le~l~~~~~~~~~~~i~lp~~~~~~~~~~~~~~~ 276 (289)
++-+..+-+..+.++ +.+.+|.+|.|++|.+..|..|..
T Consensus 111 Pmg~YSkk~ksl~el---~~GatIaiPNDpsN~gRAL~lL~~ 149 (268)
T COG1464 111 PMGLYSKKYKSLAEL---KDGATIAIPNDPTNEGRALLLLQK 149 (268)
T ss_pred cceecchhcCcHhhC---CCCCEEECCCCCCchhHHHHHHHH
Confidence 555655666666666 678999999999999998887754
No 135
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=30.86 E-value=1.6e+02 Score=25.66 Aligned_cols=16 Identities=25% Similarity=0.081 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 022993 169 RLRLAANEKAEAEKIL 184 (289)
Q Consensus 169 ~~~~a~~~~Ae~~~~~ 184 (289)
.+...-+.+|+.++..
T Consensus 51 ~eA~~Ii~~A~~~a~~ 66 (255)
T TIGR03825 51 AEAAQIIEQAEAQAAA 66 (255)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334444444443
No 136
>PRK15354 type III secretion system protein SsaK; Provisional
Probab=29.97 E-value=3.5e+02 Score=23.07 Aligned_cols=42 Identities=10% Similarity=0.026 Sum_probs=22.7
Q ss_pred HHHHHHHhcCCCCCcchhhhHHHHHHHHHHHHHHhccCCCcEEEec
Q 022993 216 DSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIP 261 (289)
Q Consensus 216 ~~~~~~~~a~~~~~~~~~~~~~l~~~~le~l~~~~~~~~~~~i~lp 261 (289)
.+++.+-.++.+ +...+..|-.|.=+...+++. .+.=++.++
T Consensus 119 ~aI~~VltaW~g---QQ~isq~Li~RLa~Qv~~mA~-eg~LtL~VH 160 (224)
T PRK15354 119 NSIEQVLLAWFD---QQSVDSVMCHRLARQATAMAE-EGALYLRIH 160 (224)
T ss_pred HHHHHHHHHHhc---cCchHHHHHHHHHHHHHHHHh-cCceEEEEC
Confidence 344444445532 233345566667777777765 455555555
No 137
>PF06635 NolV: Nodulation protein NolV; InterPro: IPR010586 This family consists of several nodulation protein NolV sequences from different Rhizobium species []. The function of this family is unclear.; GO: 0009877 nodulation
Probab=29.76 E-value=1e+02 Score=26.09 Aligned_cols=34 Identities=12% Similarity=0.380 Sum_probs=27.4
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCHHHHHhh--HHHHH
Q 022993 92 NTRSQIQAYVFDVIRASVPKLDLDATFEQ--KNDIA 125 (289)
Q Consensus 92 ~~~~~l~~~~~~~lr~~i~~~~~~~i~~~--R~~i~ 125 (289)
..++.|-+++.+++|.++|.|+.++++.. |..|.
T Consensus 90 ~LE~~l~~LVl~~Vr~ILg~fd~~ell~r~vr~Al~ 125 (207)
T PF06635_consen 90 GLEQELAELVLEIVRKILGEFDPDELLVRAVRQALS 125 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 45678889999999999999999998753 54443
No 138
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=29.11 E-value=3.1e+02 Score=22.10 Aligned_cols=7 Identities=0% Similarity=0.259 Sum_probs=2.8
Q ss_pred HHHHHhh
Q 022993 114 LDATFEQ 120 (289)
Q Consensus 114 ~~~i~~~ 120 (289)
+..++.+
T Consensus 31 i~~~l~~ 37 (161)
T COG0711 31 ILKALDE 37 (161)
T ss_pred HHHHHHH
Confidence 3344444
No 139
>PHA02571 a-gt.4 hypothetical protein; Provisional
Probab=28.34 E-value=2.6e+02 Score=21.08 Aligned_cols=72 Identities=17% Similarity=0.065 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHHHHHHHHH
Q 022993 174 ANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEI 249 (289)
Q Consensus 174 ~~~~Ae~~~~~~i~~A~aeaea~~~~Aea~a~a~~~~aea~a~~~~~~~~a~~~~~~~~~~~~~l~~~~le~l~~~ 249 (289)
+..++++++++.....+..+|-.++..=|+......-=++-..+|.++..-+.++ ..+.++...|..+-+++
T Consensus 25 ~~~e~eA~kkA~K~lkKN~rEIkRL~~HAe~al~~~Nk~~Y~YAI~KLR~i~kQp----~~de~i~tmW~TSrqqi 96 (109)
T PHA02571 25 ARNEAEAEKKAAKILKKNRREIKRLKKHAEEALFDNNKEQYVYAIKKLRDIYKQP----YTDELIETMWETSRQQI 96 (109)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHcCC----CcHHHHHHHHHHHHHHH
Confidence 3444555666666666666666666555544444334445567788887777653 33445555566555444
No 140
>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]
Probab=28.21 E-value=2.6e+02 Score=21.02 Aligned_cols=38 Identities=24% Similarity=0.296 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 022993 161 MNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYL 198 (289)
Q Consensus 161 ~~~~~~A~~~~~a~~~~Ae~~~~~~i~~A~aeaea~~~ 198 (289)
|..-.+||.+....+.+|+..+...+.+|+-||+..+.
T Consensus 8 IqQLLqAEK~A~e~V~~ARk~K~~RLKQAKeEA~~Eie 45 (108)
T KOG1772|consen 8 IQQLLQAEKRAAEKVEEARKRKLRRLKQAKEEAEKEIE 45 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666665555666666666666666666655544
No 141
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=27.31 E-value=21 Score=27.50 Aligned_cols=20 Identities=25% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHHhhh
Q 022993 182 KILQIKRAEGEAESKYLAGL 201 (289)
Q Consensus 182 ~~~~i~~A~aeaea~~~~Ae 201 (289)
+...+..|+.+++..+..|.
T Consensus 87 A~~i~~~A~~~a~~i~~~A~ 106 (131)
T PF05103_consen 87 AEEIIEEAQKEAEEIIEEAR 106 (131)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333334444433333333
No 142
>PRK15322 invasion protein OrgB; Provisional
Probab=26.81 E-value=2.5e+02 Score=23.78 Aligned_cols=42 Identities=10% Similarity=0.223 Sum_probs=21.6
Q ss_pred HHHhcCCCCCcchhhhHHHHHHHHHHHHHHhccCCCcEEEecCCCCcHH
Q 022993 220 AFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVK 268 (289)
Q Consensus 220 ~~~~a~~~~~~~~~~~~~l~~~~le~l~~~~~~~~~~~i~lp~~~~~~~ 268 (289)
.++.++. .|++. ..+...|+-.+... ...-.++||.+.....
T Consensus 84 lls~~Ld---~pd~L-L~~le~Wl~~l~~~---~~pL~l~lP~~ak~~~ 125 (210)
T PRK15322 84 LFSAAVD---HPETL-LTVLDEWLRDFDKP---EGQLFLTLPVNAKKDH 125 (210)
T ss_pred HHHHHcc---CHHHH-HHHHHHHHHhCccc---cCceeEecChhhhhhH
Confidence 3445544 34432 23334455555554 2445689998764443
No 143
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=25.91 E-value=3.8e+02 Score=22.09 Aligned_cols=32 Identities=16% Similarity=0.152 Sum_probs=17.2
Q ss_pred HHHHHHHhccCCCcEEEecCCCCcHHHHHHHHH
Q 022993 243 FDTMKEIGASSKTNSVFIPHGPGAVKDIASQIR 275 (289)
Q Consensus 243 le~l~~~~~~~~~~~i~lp~~~~~~~~~~~~~~ 275 (289)
.+++..+. .+.-.+..-|.|..-+.+.+..+.
T Consensus 111 ~~a~~~l~-~~~i~i~~~~~D~~~~~~~~~~~~ 142 (198)
T PRK03963 111 KEAVEELG-EDKVVVRSNERTLKLIDSRLEEIR 142 (198)
T ss_pred HHHHHHhC-CCcEEEEEccccHHHHHHHHHHHH
Confidence 34444432 245567777766666655555444
No 144
>KOG1749 consensus 40S ribosomal protein S23 [Translation, ribosomal structure and biogenesis]
Probab=25.76 E-value=78 Score=24.27 Aligned_cols=31 Identities=13% Similarity=0.222 Sum_probs=24.1
Q ss_pred eEEEecCCeEEEEEecCeeeeee--CCcceeec
Q 022993 6 GCIQVDQSTVAIKETFGKFDDVL--EPGCHCLP 36 (289)
Q Consensus 6 ~~~~V~~g~~~Vv~~fGk~~~~~--~pG~h~~~ 36 (289)
|+..|+++....+..||+--... -||..|++
T Consensus 90 cln~ieendevlv~gfgrkg~avgdipgvrfkv 122 (143)
T KOG1749|consen 90 CLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKV 122 (143)
T ss_pred ceeeeccCCeeeeeccCccCccccCCCceEEEE
Confidence 66789999999999999855433 58988874
No 145
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=25.59 E-value=8e+02 Score=26.86 Aligned_cols=20 Identities=15% Similarity=0.042 Sum_probs=11.1
Q ss_pred HHHhhHHHHHHHhhhhHHHH
Q 022993 187 KRAEGEAESKYLAGLGIARQ 206 (289)
Q Consensus 187 ~~A~aeaea~~~~Aea~a~a 206 (289)
.+|+..|++...+|++.+..
T Consensus 1446 seA~~~Aq~~~~~a~as~~q 1465 (1758)
T KOG0994|consen 1446 SEAQQSAQRALEQANASRSQ 1465 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666655443
No 146
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=23.82 E-value=55 Score=26.03 Aligned_cols=31 Identities=16% Similarity=0.338 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhcccCeEEEEEEEeecCCCh
Q 022993 125 AKAVEEELEKAMSHYGYEIVQTLIVDIEPDE 155 (289)
Q Consensus 125 ~~~v~~~l~~~l~~~Gi~V~~v~I~~i~~p~ 155 (289)
.-++++.|.+.|.++|.+|.++.-.+.++|+
T Consensus 11 G~~lK~~l~~~L~~~g~eV~D~G~~~~dypd 41 (141)
T PRK12613 11 GNALKELIKSFLQEEGYDIIDVTDINSDFID 41 (141)
T ss_pred hHHHHHHHHHHHHHCCCEEEEcCCCCCChHH
Confidence 3567888888999999999998765566665
No 147
>PRK06328 type III secretion system protein; Validated
Probab=23.48 E-value=2.8e+02 Score=23.72 Aligned_cols=26 Identities=15% Similarity=0.336 Sum_probs=10.6
Q ss_pred HHHHHHHHhccCCCcEEEecCCCCcHHHH
Q 022993 242 YFDTMKEIGASSKTNSVFIPHGPGAVKDI 270 (289)
Q Consensus 242 ~le~l~~~~~~~~~~~i~lp~~~~~~~~~ 270 (289)
--++|..+. +...+.|-.+|.+..-+
T Consensus 121 V~~aL~~l~---~~~~v~I~VnP~D~~~v 146 (223)
T PRK06328 121 IANSLKELT---QHKRIIIHVNPKDLAIV 146 (223)
T ss_pred HHHHHHhcc---cCCceEEEECHHHHHHH
Confidence 344454442 22334343334444433
No 148
>PF03780 Asp23: Asp23 family; InterPro: IPR005531 This entry represents the alkaline shock protein 23 family. These small proteins are involved in alkaline pH tolerance of Staphylococcus aureus [,].
Probab=22.97 E-value=1.2e+02 Score=22.13 Aligned_cols=23 Identities=17% Similarity=0.476 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhccc-CeEEEEEEE
Q 022993 126 KAVEEELEKAMSHY-GYEIVQTLI 148 (289)
Q Consensus 126 ~~v~~~l~~~l~~~-Gi~V~~v~I 148 (289)
+++++.+.+.+..+ |+.+.+|+|
T Consensus 79 ~~iq~~V~~~v~~~tg~~v~~V~V 102 (108)
T PF03780_consen 79 EEIQEKVKEAVEEMTGIEVSEVNV 102 (108)
T ss_pred HHHHHHHHHHHHHHHCCeeEEEEE
Confidence 33444444444444 666665554
No 149
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=22.73 E-value=2.8e+02 Score=19.54 Aligned_cols=14 Identities=14% Similarity=-0.088 Sum_probs=5.3
Q ss_pred HHhhHHHHHHHhhh
Q 022993 188 RAEGEAESKYLAGL 201 (289)
Q Consensus 188 ~A~aeaea~~~~Ae 201 (289)
.|+.+++..+..|+
T Consensus 43 ~A~~ea~~ii~~Ak 56 (85)
T TIGR02926 43 EASKLGEEIIKEAE 56 (85)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 150
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=22.30 E-value=4e+02 Score=25.59 Aligned_cols=10 Identities=0% Similarity=0.278 Sum_probs=5.1
Q ss_pred HHHHHHHHHh
Q 022993 241 QYFDTMKEIG 250 (289)
Q Consensus 241 ~~le~l~~~~ 250 (289)
.|++++...+
T Consensus 255 kwl~aInTtf 264 (630)
T KOG0742|consen 255 KWLEAINTTF 264 (630)
T ss_pred HHHHHHhhhH
Confidence 4555555443
No 151
>PTZ00321 ribosomal protein L11; Provisional
Probab=21.33 E-value=4.4e+02 Score=23.93 Aligned_cols=41 Identities=7% Similarity=0.075 Sum_probs=26.0
Q ss_pred HHcCCCCHHHHHhh----HHHHH-------HHHHHHHHHHhcccCeEEEEEE
Q 022993 107 ASVPKLDLDATFEQ----KNDIA-------KAVEEELEKAMSHYGYEIVQTL 147 (289)
Q Consensus 107 ~~i~~~~~~~i~~~----R~~i~-------~~v~~~l~~~l~~~Gi~V~~v~ 147 (289)
+.+|..|+++++.- ..++. +.+...+--.+..+||.|+...
T Consensus 144 e~VG~ITlkQVyEIAkiK~~DLnal~~~~LesAvK~ViGTARSMGIkVeGKD 195 (342)
T PTZ00321 144 HYCALMTLEMAYEIAKMKPRSWGRPEYPLIETRVRRVVGQARRMGVCFIGVD 195 (342)
T ss_pred ceEEeccHHHHHHHHHHhhhccccccccCHHHHHHHHHhhHhcCeEEEeccc
Confidence 58888999888762 23322 2233334456677899999743
Done!