Query 022993
Match_columns 289
No_of_seqs 199 out of 1601
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 14:32:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022993.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022993hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bk6_A PH stomatin; archaea, t 100.0 1.7E-30 5.8E-35 217.3 17.4 176 41-255 4-180 (188)
2 4fvg_A Stomatin; mixed alpha-b 99.9 1.5E-27 5.1E-32 188.3 11.8 130 34-167 3-133 (133)
3 1win_A Flotillin 2; BAND 7 dom 99.9 4.7E-23 1.6E-27 164.5 4.3 127 41-168 5-139 (143)
4 2rpb_A Hypothetical membrane p 99.9 7.4E-22 2.5E-26 151.3 9.5 109 46-156 4-113 (113)
5 2zuo_A MVP, major vault protei 99.1 1.2E-07 4E-12 92.1 26.5 153 7-162 459-655 (861)
6 3v6i_B V-type ATP synthase, su 87.6 6 0.00021 28.3 9.9 31 173-203 20-50 (105)
7 2xzm_4 40S ribosomal protein S 78.2 4.9 0.00017 34.1 6.5 91 58-148 128-223 (265)
8 2k6i_A Uncharacterized protein 77.2 2.9 9.8E-05 26.6 3.6 24 178-201 24-47 (56)
9 2kk7_A V-type ATP synthase sub 75.4 6.2 0.00021 24.7 4.9 27 189-215 19-45 (52)
10 3v6i_B V-type ATP synthase, su 75.1 17 0.00057 26.0 7.5 28 166-193 24-51 (105)
11 3v6i_A V-type ATP synthase sub 75.0 14 0.00048 29.4 8.3 22 175-196 19-40 (187)
12 2zuo_A MVP, major vault protei 74.5 20 0.00068 35.4 10.4 13 8-20 487-499 (861)
13 3u5c_B RP10A, 40S ribosomal pr 71.7 4.9 0.00017 34.0 4.8 91 58-148 125-217 (255)
14 2k6i_A Uncharacterized protein 65.6 9.5 0.00033 24.2 4.0 29 166-194 23-51 (56)
15 4efa_G V-type proton ATPase su 62.9 43 0.0015 24.7 8.6 40 160-199 11-50 (119)
16 3v6i_A V-type ATP synthase sub 62.2 56 0.0019 25.7 12.5 13 237-249 102-114 (187)
17 3j20_A 30S ribosomal protein S 61.3 44 0.0015 27.0 8.4 81 59-148 108-190 (198)
18 3bk6_A PH stomatin; archaea, t 55.4 15 0.00052 29.1 4.8 23 202-224 130-152 (188)
19 4efa_G V-type proton ATPase su 53.4 54 0.0019 24.1 7.1 43 173-215 13-55 (119)
20 2b5u_A Colicin E3; high resolu 41.3 1.7E+02 0.0057 27.1 9.6 33 139-171 278-310 (551)
21 2acm_B Mucin-1; auto-catalytic 37.5 39 0.0013 21.2 3.4 23 134-156 30-52 (55)
22 4efa_E V-type proton ATPase su 31.8 1.3E+02 0.0046 24.4 7.1 10 154-163 10-19 (233)
23 1l2p_A ATP synthase B chain; a 23.3 1.4E+02 0.0048 18.5 6.6 15 200-214 33-47 (61)
24 4efa_E V-type proton ATPase su 22.5 3.1E+02 0.011 22.1 9.7 8 242-249 125-132 (233)
No 1
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=99.97 E-value=1.7e-30 Score=217.26 Aligned_cols=176 Identities=24% Similarity=0.287 Sum_probs=139.5
Q ss_pred ceeeEeeeeeEEEeecCC-ccccCCCcEEEEEEEEEEEEcccchhhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHh
Q 022993 41 SQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFE 119 (289)
Q Consensus 41 ~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~ 119 (289)
+++ ..+|+|.++++++. .++|+|+++|.|+++++|||.|| .++++++.|+...+.+++++++|+++|+++++++++
T Consensus 4 ~~v-~~vd~r~~~~~v~~~~v~TkD~~~V~v~~~v~yrI~dp--~~~~~~v~~~~~~i~~~~~~~lR~vig~~~l~ell~ 80 (188)
T 3bk6_A 4 EKA-VIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDP--VKAVTQVKNYIMATSQISQTTLRSVIGQAHLDELLS 80 (188)
T ss_dssp EEC-CCCCSSCEEEEEEEEEEECTTSCEEEEEEEEEEEESCH--HHHHHSSSCHHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred EEE-EEEeeeEEEEecCCceeEcCCCCEEEEEEEEEEEECCH--HHHHHHhcCHHHHHHHHHHHHHHHHHccCCHHHHHh
Confidence 565 58999999999987 89999999999999999999994 677889999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 022993 120 QKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLA 199 (289)
Q Consensus 120 ~R~~i~~~v~~~l~~~l~~~Gi~V~~v~I~~i~~p~~v~~a~~~~~~A~~~~~a~~~~Ae~~~~~~i~~A~aeaea~~~~ 199 (289)
+|++|+..+++.|++.+.+|||.|++|.|++|.||+++.++|+++++|++++++.+.+|| |++++.+..
T Consensus 81 ~R~~i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~ev~~a~~~~~~Aere~~A~i~~Ae-----------ge~~a~~~~ 149 (188)
T 3bk6_A 81 ERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQAEAERERRARITLAE-----------AERQAAEKL 149 (188)
T ss_dssp CHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhH-----------HHHHHHHHH
Confidence 999999999999999999999999999999999999999999998888877655544444 444444433
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHHHHHHHHHhccCCC
Q 022993 200 GLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKT 255 (289)
Q Consensus 200 Aea~a~a~~~~aea~a~~~~~~~~a~~~~~~~~~~~~~l~~~~le~l~~~~~~~~~ 255 (289)
|+| .+.++. + +..+.+||||++.++++++++
T Consensus 150 a~a---------------~~~~~~------~----~~~l~lr~le~~~~ia~~~~~ 180 (188)
T 3bk6_A 150 REA---------------AEIISE------H----PMALQLRTLQTISDVAGDKSN 180 (188)
T ss_dssp HHH---------------HHHHHH------C----TTHHHHHHTTC----------
T ss_pred HHH---------------HHHHHh------C----HHHHHHHHHHHHHHHhcCCCC
Confidence 332 122222 1 346788999999999875443
No 2
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Probab=99.95 E-value=1.5e-27 Score=188.27 Aligned_cols=130 Identities=22% Similarity=0.304 Sum_probs=105.6
Q ss_pred eecCcccceeeEeeeeeEEEeecCC-ccccCCCcEEEEEEEEEEEEcccchhhhhccccChHHHHHHHHHHHHHHHcCCC
Q 022993 34 CLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKL 112 (289)
Q Consensus 34 ~~~P~~~~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~ 112 (289)
+..||+ +++ .++|+|.++++++. +++|+|++.|.|+++++|||.| |.++++++.|++..+..++++++|+++|++
T Consensus 3 l~~P~i-d~v-~~vd~R~~~~d~~~q~vlT~D~~~v~Vd~~v~yrI~D--p~~~~~~v~~~~~~l~~~~~~~lR~vig~~ 78 (133)
T 4fvg_A 3 LGSPST-DSA-AKVDMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQN--ATLAVANITNADSATRLLAQTTLRNALGTK 78 (133)
T ss_dssp -------------CCCSCEEEEEEEEEEECTTCCEEEEEEEEEEEESC--HHHHHHSSSCHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCce-eEE-EEEEeEEEEecCCCeEEEeCCCCEEEEEEEEEEEEee--hHHhHhhhhhHHHHHHHHHHHHHHHHhccc
Confidence 678997 566 48999999999987 8999999999999999999999 578999999999999999999999999999
Q ss_pred CHHHHHhhHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCChHHHHHHHHHHHH
Q 022993 113 DLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAA 167 (289)
Q Consensus 113 ~~~~i~~~R~~i~~~v~~~l~~~l~~~Gi~V~~v~I~~i~~p~~v~~a~~~~~~A 167 (289)
++++++++|++|+..+++.+++.+++|||+|.+|.|+++.||+++++||+++++|
T Consensus 79 ~ldeil~~r~~i~~~i~~~l~~~~~~~GI~V~~V~ikdi~~P~~v~~am~~~~~A 133 (133)
T 4fvg_A 79 NLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAMAAEAEA 133 (133)
T ss_dssp CHHHHHHCHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEECCCC-----------
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhcCCEEEEEEEEEecCCCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999887765
No 3
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1
Probab=99.87 E-value=4.7e-23 Score=164.47 Aligned_cols=127 Identities=17% Similarity=0.280 Sum_probs=109.4
Q ss_pred ceeeEeeeeeEEEeecCC-ccccCCCcEEEEEEEEEEEEcc-cchh-hhhcc--c---cChHHHHHHHHHHHHHHHcCCC
Q 022993 41 SQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALA-EKAS-DAFYK--L---SNTRSQIQAYVFDVIRASVPKL 112 (289)
Q Consensus 41 ~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~d-~~~~-~~~~~--~---~~~~~~l~~~~~~~lr~~i~~~ 112 (289)
+++ .++|+|.++++++. ++.|+|++++.|+++++|||.| |..+ .++.+ . ...+..+.+.++++||+++|++
T Consensus 5 ~~v-~~vdlr~~~ldv~~q~viTkD~v~v~Vdavv~~rI~dd~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~LR~viG~~ 83 (143)
T 1win_A 5 SSG-QRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTL 83 (143)
T ss_dssp CCC-CSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred eEE-EEEECceEEEeCCcceeEcCCCCEEEEEEEEEEEECCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 465 48999999999987 8999999999999999999984 4321 11211 1 2245668889999999999999
Q ss_pred CHHHHHhhHHHHHHHHHHHHHHHhcccCeEEEEEEEeecCCChHHHHHHHHHHHHH
Q 022993 113 DLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAA 168 (289)
Q Consensus 113 ~~~~i~~~R~~i~~~v~~~l~~~l~~~Gi~V~~v~I~~i~~p~~v~~a~~~~~~A~ 168 (289)
++++++++|++|+..+++.+++.+.+|||+|.+|.|++|.||+++.+||.+++.|+
T Consensus 84 tldeils~R~~i~~~v~~~~~~~~~~~Gi~V~~v~IkdI~~p~~~~~am~~~~~Ae 139 (143)
T 1win_A 84 TVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTSG 139 (143)
T ss_dssp CHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEeecChHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999876665
No 4
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}
Probab=99.86 E-value=7.4e-22 Score=151.26 Aligned_cols=109 Identities=30% Similarity=0.437 Sum_probs=104.3
Q ss_pred eeeeeEEEeecCC-ccccCCCcEEEEEEEEEEEEcccchhhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHhhHHHH
Q 022993 46 QLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDI 124 (289)
Q Consensus 46 ~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i 124 (289)
.+|+|.++++++. .++|+|+++|.++++++|||.|| .++++++.|++..|.+.+++++|+++|++++++++++|++|
T Consensus 4 ~vd~r~~~~~~~~~~v~T~D~~~v~v~~~v~~rI~dp--~~~~~~v~~~~~~l~~~~~~~lR~vig~~~l~ei~~~R~~i 81 (113)
T 2rpb_A 4 HVDLREHVIDVPPQEVICKDNVVVTVDAVVYYQVIDP--VKAVYNVSDFLMAIVKLAQTNLRAIIGEMELDETLSGRDII 81 (113)
T ss_dssp CCCCCCEEEECCCEEEECTTSCEEEECEEEEEEESCT--TTCTTTTTHHHHHHHHHHHHHHHHHHTSCCTTHHHHCHHHH
T ss_pred EEeeeEEEEecCcceeEeCCCCEEEEEEEEEEEECCH--HHHHHhcCCHHHHHHHHHHHHHHHHHhcCcHHHHHhCHHHH
Confidence 6899999999987 99999999999999999999994 67889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCeEEEEEEEeecCCChH
Q 022993 125 AKAVEEELEKAMSHYGYEIVQTLIVDIEPDEH 156 (289)
Q Consensus 125 ~~~v~~~l~~~l~~~Gi~V~~v~I~~i~~p~~ 156 (289)
+..+++.+++.+++|||+|.+|.|+++.||++
T Consensus 82 ~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~e 113 (113)
T 2rpb_A 82 NARLREELDKITDRWGVKITRVEIQRIDPPKD 113 (113)
T ss_dssp HHHHHHHHHHHHGGGTEECCCEEECCCBCCCC
T ss_pred HHHHHHHHHHHHHhcCeEEEEEEEEEecCCCC
Confidence 99999999999999999999999999999974
No 5
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=99.05 E-value=1.2e-07 Score=92.12 Aligned_cols=153 Identities=14% Similarity=0.161 Sum_probs=104.8
Q ss_pred EEEecCCeEEEEEec--CeeeeeeCCcceeecCcccceeeEeeee-----------eEEEeecC-------CccccCCCc
Q 022993 7 CIQVDQSTVAIKETF--GKFDDVLEPGCHCLPWCLGSQVAGQLSL-----------RVQQLDVR-------CETKTKDNV 66 (289)
Q Consensus 7 ~~~V~~g~~~Vv~~f--Gk~~~~~~pG~h~~~P~~~~~v~~~~~~-----------r~~~~~~~-------~~v~T~D~~ 66 (289)
.|.||.+.+.-++-+ |+..-+.||-+.+.-|- . .. ..+++ +.-.+.+. ..|-|+|..
T Consensus 459 ~~rvphnaaVqvyDy~~~~~RvvfGP~lv~L~Pd-E-~f-tvlsLSgg~PK~~~~i~sl~L~lGPdf~tD~i~vET~DhA 535 (861)
T 2zuo_A 459 SYRVPHNAAVQVYDYRAKRARVVFGPELVTLDPE-E-QF-TVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHA 535 (861)
T ss_dssp EEECCTTEEEEEECSSSCCEEEECSSCEEECCSS-C-EE-CCEEECCSSSCCTTSEEESSEECSSCEEEEEEEEECTTCC
T ss_pred EEEcCCCeEEEEEecCCCceEEEECCcEEEECCC-c-cE-EEEEecCCCCCCCCceEEEEeeeCCccceEEEEEEEcCce
Confidence 467888888888865 54445789988777664 2 22 12222 11112222 268999999
Q ss_pred EEEEEEEEEEEEc--cc---chhhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHhhHHHHHHH-HHHH---------
Q 022993 67 FVNVVASVQYRAL--AE---KASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKA-VEEE--------- 131 (289)
Q Consensus 67 ~v~v~~~v~yrI~--d~---~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~~~-v~~~--------- 131 (289)
.+.+..+++|+.. |+ .....+|.+.|+-.-+-..+.+.+|..+++.++|++..+-..|-.. +...
T Consensus 536 rL~L~LsYnW~F~~~d~~~~~~~~k~Fsv~DFvGd~Ck~iaSriR~aVA~~~Fd~FHknsa~iir~aVFg~~~~~~~~~~ 615 (861)
T 2zuo_A 536 RLQLQLAYNWHFELKNRNDPAEAAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPD 615 (861)
T ss_dssp EEEEEEEEEEEECCTTTTCHHHHHGGGSSSSHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCCC--------
T ss_pred EEEEEEEEEEEEeccCCCChhhhhhhccCCchHHHHHHHHHHHHHHHhhcCcHHHHhhhHHHHHHHhhcCCCcccccccc
Confidence 9999999999885 32 2236789999999989999999999999999999999875554222 1110
Q ss_pred ------HH--HHhcccCeEEEEEEEeecCCCh-HHHHHHH
Q 022993 132 ------LE--KAMSHYGYEIVQTLIVDIEPDE-HVKRAMN 162 (289)
Q Consensus 132 ------l~--~~l~~~Gi~V~~v~I~~i~~p~-~v~~a~~ 162 (289)
.. -.+...|+.|++|.|+.+.|-+ ...+++.
T Consensus 616 ~~~~~~~~~~~~F~~N~lvitsVDvqsvEpvDqrtrd~Lq 655 (861)
T 2zuo_A 616 GTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQ 655 (861)
T ss_dssp -----CCCSCEECTTTCEEEEEEEEEEEEESSHHHHHHHH
T ss_pred cccccCcccceEEccCCeEEEEEeeeeecccCHHHHHHHH
Confidence 00 1245569999999999999854 3333333
No 6
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=87.64 E-value=6 Score=28.26 Aligned_cols=31 Identities=29% Similarity=0.206 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhH
Q 022993 173 AANEKAEAEKILQIKRAEGEAESKYLAGLGI 203 (289)
Q Consensus 173 a~~~~Ae~~~~~~i~~A~aeaea~~~~Aea~ 203 (289)
+.+.+|..++...+..|++++.+...+|+..
T Consensus 20 ~~lE~Ar~eA~~~v~~AEAeA~ril~eAe~~ 50 (105)
T 3v6i_B 20 ERLEAAKKEAEERVKRAEAEAKALLEEAEAK 50 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555443
No 7
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_4
Probab=78.24 E-value=4.9 Score=34.08 Aligned_cols=91 Identities=16% Similarity=0.230 Sum_probs=58.3
Q ss_pred CccccCCCcEEEEEEEEEEEEcc---cchhhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHhh--HHHHHHHHHHHH
Q 022993 58 CETKTKDNVFVNVVASVQYRALA---EKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ--KNDIAKAVEEEL 132 (289)
Q Consensus 58 ~~v~T~D~~~v~v~~~v~yrI~d---~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~--R~~i~~~v~~~l 132 (289)
.+|.|.||..+.|-....-+-.. ....+..|.-..-...|+......+...++..++++++.. -+.|..+|....
T Consensus 128 vdVkT~DGY~lRvf~i~fT~kr~~~~~q~kkt~Ya~~SQir~IRkkm~eii~~~~~~~dl~e~V~kli~~~i~keI~k~~ 207 (265)
T 2xzm_4 128 VDCKTNDGYIIRVFTLAFTKKTSAGKQSSTSTCYAKSSQVRAIRRKINTFITNEAAKLGIAEFSKNLIGEDYTKKIEKET 207 (265)
T ss_dssp EEEEETTTEEEEEEEEEEECCCSSCCSCSSCCBCCTHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTTHHHHHHHHHH
T ss_pred EEEEeCCCcEEEEEEEEEEecccccccccceeeeccccchHHHHHHHHHHHHHHhhhCCHHHHHHHHccchHHHHHHHHh
Confidence 37899999998887765443322 1122233333334457899999999999999999999976 566666666655
Q ss_pred HHHhcccCeEEEEEEE
Q 022993 133 EKAMSHYGYEIVQTLI 148 (289)
Q Consensus 133 ~~~l~~~Gi~V~~v~I 148 (289)
+...--..+.|.-|.+
T Consensus 208 k~IyPL~~V~IrKvKv 223 (265)
T 2xzm_4 208 KNIFPLQNITIRKVKV 223 (265)
T ss_dssp TTTCCEEEEEEEEEEE
T ss_pred hhccccceEEEEEEEE
Confidence 5433222344554443
No 8
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=77.24 E-value=2.9 Score=26.62 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhh
Q 022993 178 AEAEKILQIKRAEGEAESKYLAGL 201 (289)
Q Consensus 178 Ae~~~~~~i~~A~aeaea~~~~Ae 201 (289)
||.++...+..|+.+++..+..|.
T Consensus 24 AE~~A~~iVeeA~~ea~~ii~eAr 47 (56)
T 2k6i_A 24 AEEQAVKEIEEAKNRAEQIKAEAI 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444443333333
No 9
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=75.41 E-value=6.2 Score=24.65 Aligned_cols=27 Identities=11% Similarity=-0.090 Sum_probs=12.0
Q ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHH
Q 022993 189 AEGEAESKYLAGLGIARQRQAIVDGLR 215 (289)
Q Consensus 189 A~aeaea~~~~Aea~a~a~~~~aea~a 215 (289)
|+.+++..+..|+.+|+.....|+..+
T Consensus 19 A~~eA~~Il~eA~~eA~~Ii~eA~~~A 45 (52)
T 2kk7_A 19 AKAEANKIISEAEAEKAKILEKAKEEA 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444333
No 10
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=75.09 E-value=17 Score=26.01 Aligned_cols=28 Identities=32% Similarity=0.278 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 022993 166 AAARLRLAANEKAEAEKILQIKRAEGEA 193 (289)
Q Consensus 166 ~A~~~~~a~~~~Ae~~~~~~i~~A~aea 193 (289)
.|+++.+..+.+||+++...+..|+..+
T Consensus 24 ~Ar~eA~~~v~~AEAeA~ril~eAe~~a 51 (105)
T 3v6i_B 24 AAKKEAEERVKRAEAEAKALLEEAEAKA 51 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556677777777776555555444
No 11
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=74.98 E-value=14 Score=29.37 Aligned_cols=22 Identities=27% Similarity=0.210 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHH
Q 022993 175 NEKAEAEKILQIKRAEGEAESK 196 (289)
Q Consensus 175 ~~~Ae~~~~~~i~~A~aeaea~ 196 (289)
+.+|+.++...+..|+.+|++.
T Consensus 19 ~~eA~~~a~~I~~eA~~eA~~~ 40 (187)
T 3v6i_A 19 LQEAEAKAEAVKREAEEKAKAL 40 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 12
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=74.53 E-value=20 Score=35.39 Aligned_cols=13 Identities=8% Similarity=0.056 Sum_probs=6.7
Q ss_pred EEecCCeEEEEEe
Q 022993 8 IQVDQSTVAIKET 20 (289)
Q Consensus 8 ~~V~~g~~~Vv~~ 20 (289)
+..+|.+.-.+..
T Consensus 487 v~L~PdE~ftvls 499 (861)
T 2zuo_A 487 VTLDPEEQFTVLS 499 (861)
T ss_dssp EECCSSCEECCEE
T ss_pred EEECCCccEEEEE
Confidence 4455555555444
No 13
>3u5c_B RP10A, 40S ribosomal protein S1-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_B
Probab=71.73 E-value=4.9 Score=33.97 Aligned_cols=91 Identities=15% Similarity=0.186 Sum_probs=60.4
Q ss_pred CccccCCCcEEEEEEEEEEEEcccchhhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHhh--HHHHHHHHHHHHHHH
Q 022993 58 CETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ--KNDIAKAVEEELEKA 135 (289)
Q Consensus 58 ~~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~--R~~i~~~v~~~l~~~ 135 (289)
.++.|.||..+.+-....-.-.+....+..|--..-...|+......+...++..++++++.. -+.|+.+|....+..
T Consensus 125 vdVkT~DGy~lRvf~i~fT~kr~~q~~kt~YA~~sQi~~IRkkm~eii~~~~~~~dl~e~V~kli~~~i~~eI~k~~k~I 204 (255)
T 3u5c_B 125 VTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDI 204 (255)
T ss_dssp EEEECSSSCEEEECCEEECCCCTTCCSSCCCCCSHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHTTTHHHHHHHHHHHTT
T ss_pred EEEEecCCCEEEEEEEEEEcccccccccceechHhHHHHHHHHHHHHHHHHhhhCCHHHHHHHHcCchHHHHHHHHhccc
Confidence 378999999988877754332221112223333333457899999999999999999999986 578888888777655
Q ss_pred hcccCeEEEEEEE
Q 022993 136 MSHYGYEIVQTLI 148 (289)
Q Consensus 136 l~~~Gi~V~~v~I 148 (289)
.-=.-+.|.-|.+
T Consensus 205 yPL~~V~IrKvKv 217 (255)
T 3u5c_B 205 FPLQNIHVRKVKL 217 (255)
T ss_dssp CCCEEEECCCEEE
T ss_pred cccceEEEEEEEE
Confidence 3333344444443
No 14
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=65.60 E-value=9.5 Score=24.20 Aligned_cols=29 Identities=21% Similarity=0.047 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 022993 166 AAARLRLAANEKAEAEKILQIKRAEGEAE 194 (289)
Q Consensus 166 ~A~~~~~a~~~~Ae~~~~~~i~~A~aeae 194 (289)
.|+++....+.+|+.+++..+..|+.+++
T Consensus 23 eAE~~A~~iVeeA~~ea~~ii~eAreeAk 51 (56)
T 2k6i_A 23 LAEEQAVKEIEEAKNRAEQIKAEAIEEAK 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555544443
No 15
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=62.95 E-value=43 Score=24.69 Aligned_cols=40 Identities=15% Similarity=0.112 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 022993 160 AMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLA 199 (289)
Q Consensus 160 a~~~~~~A~~~~~a~~~~Ae~~~~~~i~~A~aeaea~~~~ 199 (289)
-|..-+.||++....+.+|+.++...+..|+.||++-+..
T Consensus 11 GIQqLL~AEk~A~~iV~~ARk~k~~rLKqAK~EA~~EIe~ 50 (119)
T 4efa_G 11 GIATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDS 50 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777877777777777777777777777777665543
No 16
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=62.21 E-value=56 Score=25.74 Aligned_cols=13 Identities=8% Similarity=0.299 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 022993 237 VLVTQYFDTMKEI 249 (289)
Q Consensus 237 ~l~~~~le~l~~~ 249 (289)
++...-.+++..+
T Consensus 102 ~L~~Li~ea~~~l 114 (187)
T 3v6i_A 102 VVRKLALEALEAL 114 (187)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHc
Confidence 3444445555554
No 17
>3j20_A 30S ribosomal protein S3AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=61.26 E-value=44 Score=27.00 Aligned_cols=81 Identities=17% Similarity=0.177 Sum_probs=57.6
Q ss_pred ccccCCCcEEEEEEEEEEEEcccchhhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHhh--HHHHHHHHHHHHHHHh
Q 022993 59 ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ--KNDIAKAVEEELEKAM 136 (289)
Q Consensus 59 ~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~--R~~i~~~v~~~l~~~l 136 (289)
++.|.||..+.+-....-.- . .-..-...|+....+.+...++..++++++.. -+.++.+|....+...
T Consensus 108 dVkT~DGy~lRvf~i~fT~k-r--------a~~sQ~~~IRk~m~eii~~~~~~~~l~e~V~~li~~~i~~eI~k~~k~Iy 178 (198)
T 3j20_A 108 NITTKDGYKLRVMAMAIAMR-R--------IQTSQERAIRKIMQEIIYKKAEELNFKDFVLESVNGKIAAEIAKEAKKIY 178 (198)
T ss_dssp EEECTTSCEEEEEEEEEECS-S--------CCCTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHSHHHHHHHHHHHHHHS
T ss_pred EEEecCCCEEEEEEEEEEec-c--------ccchhhhHHHHHHHHHHHHHhccCCHHHHHHHHcCChHHHHHHHhhCccc
Confidence 68999998887776643111 0 11233457899999999999999999999987 5888888888877665
Q ss_pred cccCeEEEEEEE
Q 022993 137 SHYGYEIVQTLI 148 (289)
Q Consensus 137 ~~~Gi~V~~v~I 148 (289)
-=.-++|.-+.+
T Consensus 179 Pl~~V~IrKvKv 190 (198)
T 3j20_A 179 PLRKAEIRKIKV 190 (198)
T ss_dssp CEEEEEEEEEEE
T ss_pred ccceEEEEEEEE
Confidence 434455555544
No 18
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=55.45 E-value=15 Score=29.12 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc
Q 022993 202 GIARQRQAIVDGLRDSVLAFSEN 224 (289)
Q Consensus 202 a~a~a~~~~aea~a~~~~~~~~a 224 (289)
.++++..++|+|++++.+.++++
T Consensus 130 re~~A~i~~Aege~~a~~~~a~a 152 (188)
T 3bk6_A 130 RERRARITLAEAERQAAEKLREA 152 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 34445555666666666666554
No 19
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=53.35 E-value=54 Score=24.13 Aligned_cols=43 Identities=16% Similarity=-0.019 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHH
Q 022993 173 AANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLR 215 (289)
Q Consensus 173 a~~~~Ae~~~~~~i~~A~aeaea~~~~Aea~a~a~~~~aea~a 215 (289)
....+||.++...+..|+......+.+|+.+|++.+..-..+.
T Consensus 13 QqLL~AEk~A~~iV~~ARk~k~~rLKqAK~EA~~EIe~yR~qk 55 (119)
T 4efa_G 13 ATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQK 55 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777778888777777777777776655444443
No 20
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=41.33 E-value=1.7e+02 Score=27.10 Aligned_cols=33 Identities=21% Similarity=0.224 Sum_probs=26.6
Q ss_pred cCeEEEEEEEeecCCChHHHHHHHHHHHHHHHH
Q 022993 139 YGYEIVQTLIVDIEPDEHVKRAMNEINAAARLR 171 (289)
Q Consensus 139 ~Gi~V~~v~I~~i~~p~~v~~a~~~~~~A~~~~ 171 (289)
-|++-.-|.+.+|-.|.++.+-.++...++|+-
T Consensus 278 Sg~ePlYISvs~ilt~~elkqrqeee~r~~qew 310 (551)
T 2b5u_A 278 SGHNAVYVSVSDVLSPDQVKQRQDEENRRQQEW 310 (551)
T ss_dssp GCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEeecCCHHHHHHHHHHHHHHHHHh
Confidence 488999999999999999888777766666653
No 21
>2acm_B Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=37.47 E-value=39 Score=21.22 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=15.5
Q ss_pred HHhcccCeEEEEEEEeecCCChH
Q 022993 134 KAMSHYGYEIVQTLIVDIEPDEH 156 (289)
Q Consensus 134 ~~l~~~Gi~V~~v~I~~i~~p~~ 156 (289)
+...+|.+.|.+|.++|+.+|-.
T Consensus 30 ~a~~~YnL~IS~vsV~dv~FPsS 52 (55)
T 2acm_B 30 EAASRYNLTISDVSVSDVPFPFS 52 (55)
T ss_dssp HHHHHHCCCEEEEEEECC-----
T ss_pred hccccccceecceeEEeccCCCc
Confidence 34558999999999999999854
No 22
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=31.81 E-value=1.3e+02 Score=24.42 Aligned_cols=10 Identities=20% Similarity=0.438 Sum_probs=5.1
Q ss_pred ChHHHHHHHH
Q 022993 154 DEHVKRAMNE 163 (289)
Q Consensus 154 p~~v~~a~~~ 163 (289)
|.++..-++.
T Consensus 10 ~~~v~~~i~~ 19 (233)
T 4efa_E 10 PNQVNDELNK 19 (233)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4455555553
No 23
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=23.33 E-value=1.4e+02 Score=18.52 Aligned_cols=15 Identities=7% Similarity=-0.219 Sum_probs=5.7
Q ss_pred hhhHHHHHHHHHHHH
Q 022993 200 GLGIARQRQAIVDGL 214 (289)
Q Consensus 200 Aea~a~a~~~~aea~ 214 (289)
|+.++...+..|..+
T Consensus 33 A~~ea~~i~~~A~~e 47 (61)
T 1l2p_A 33 AEQERTKIVAQAQAE 47 (61)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333444333333
No 24
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=22.45 E-value=3.1e+02 Score=22.15 Aligned_cols=8 Identities=0% Similarity=0.310 Sum_probs=3.9
Q ss_pred HHHHHHHH
Q 022993 242 YFDTMKEI 249 (289)
Q Consensus 242 ~le~l~~~ 249 (289)
-.+++..+
T Consensus 125 i~eal~~l 132 (233)
T 4efa_E 125 IVEALLKL 132 (233)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 34555555
Done!