BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022994
         (289 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5M469|KCY_STRT2 Cytidylate kinase OS=Streptococcus thermophilus (strain ATCC
           BAA-250 / LMG 18311) GN=cmk PE=3 SV=1
          Length = 226

 Score = 34.3 bits (77), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 32/46 (69%), Gaps = 2/46 (4%)

Query: 131 TTVAENLAQ-LMYSVMMTGYMFKNAQYRLELQQSLEQVALPEVLDK 175
           +TVA+ +A+ L Y+ + TG M+++A Y L LQ  L +  +PE+LD+
Sbjct: 17  STVAKIIAKNLGYTYLDTGAMYRSATY-LALQNGLTEENVPEILDQ 61


>sp|Q5LZL6|KCY_STRT1 Cytidylate kinase OS=Streptococcus thermophilus (strain CNRZ 1066)
           GN=cmk PE=3 SV=1
          Length = 226

 Score = 34.3 bits (77), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 32/46 (69%), Gaps = 2/46 (4%)

Query: 131 TTVAENLAQ-LMYSVMMTGYMFKNAQYRLELQQSLEQVALPEVLDK 175
           +TVA+ +A+ L Y+ + TG M+++A Y L LQ  L +  +PE+LD+
Sbjct: 17  STVAKIIAKNLGYTYLDTGAMYRSATY-LALQNGLTEENVPEILDQ 61


>sp|O34596|YOBK_BACSU Uncharacterized protein YobK OS=Bacillus subtilis (strain 168)
           GN=yobK PE=1 SV=1
          Length = 152

 Score = 33.5 bits (75), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 5/88 (5%)

Query: 138 AQLMYSVMMTGYMFKNAQYRLELQQSLEQVALPE---VLDKKDTPDYAPGTQKNVSGE-- 192
           A  ++ V++ GY F +A       +  E   L +   V++  D   Y   T K   GE  
Sbjct: 52  AGGLFGVLVLGYNFDHASVVNRTNEYKEHYGLTDGLVVIEDVDYFAYCLDTNKMKDGECP 111

Query: 193 VFRWNNVSGPEKIDAKKYIEFLEAEIEE 220
           V  W+ V G +   A  +IEF   +I+E
Sbjct: 112 VVEWDRVIGYQDTVADSFIEFFYNKIQE 139


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.133    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,765,167
Number of Sequences: 539616
Number of extensions: 4124247
Number of successful extensions: 21891
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 21736
Number of HSP's gapped (non-prelim): 166
length of query: 289
length of database: 191,569,459
effective HSP length: 116
effective length of query: 173
effective length of database: 128,974,003
effective search space: 22312502519
effective search space used: 22312502519
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)