Query 022994
Match_columns 289
No_of_seqs 111 out of 139
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 07:40:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022994.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022994hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05542 DUF760: Protein of un 100.0 4.8E-34 1E-38 223.1 9.5 85 81-165 1-86 (86)
2 PF05542 DUF760: Protein of un 95.4 0.0044 9.5E-08 48.9 0.2 28 234-261 1-28 (86)
3 PF06698 DUF1192: Protein of u 57.6 17 0.00036 27.8 3.7 25 205-229 24-48 (59)
4 PF05308 Mito_fiss_reg: Mitoch 42.3 28 0.0006 32.9 3.4 25 204-228 117-141 (253)
5 PF11853 DUF3373: Protein of u 36.5 21 0.00046 36.9 1.8 24 204-227 26-49 (489)
6 KOG4119 G protein gamma subuni 33.9 54 0.0012 26.0 3.3 36 211-246 9-47 (71)
7 PF07888 CALCOCO1: Calcium bin 31.1 35 0.00077 35.8 2.4 15 231-245 438-452 (546)
8 KOG0709 CREB/ATF family transc 30.8 53 0.0011 34.1 3.5 51 207-258 270-327 (472)
9 COG3074 Uncharacterized protei 30.3 72 0.0016 25.7 3.5 19 206-224 15-33 (79)
10 PF14193 DUF4315: Domain of un 29.1 56 0.0012 26.3 2.7 42 207-251 13-56 (83)
11 smart00224 GGL G protein gamma 26.4 48 0.001 24.9 1.8 31 212-242 2-35 (63)
12 PRK00084 ispF 2-C-methyl-D-ery 26.3 70 0.0015 28.6 3.1 29 104-133 108-136 (159)
13 PF07521 RMMBL: RNA-metabolisi 25.3 30 0.00066 23.9 0.6 18 231-248 18-35 (43)
14 PF02258 SLT_beta: Shiga-like 25.2 46 0.00099 26.5 1.6 19 131-149 31-49 (70)
15 PF04977 DivIC: Septum formati 24.0 53 0.0011 24.0 1.7 10 244-253 53-62 (80)
16 smart00338 BRLZ basic region l 23.9 1.1E+02 0.0024 22.3 3.3 21 207-227 24-44 (65)
17 PF04508 Pox_A_type_inc: Viral 23.8 98 0.0021 19.9 2.6 16 211-226 3-18 (23)
18 PF08826 DMPK_coil: DMPK coile 23.5 1.2E+02 0.0026 23.2 3.5 22 206-227 36-57 (61)
19 smart00353 HLH helix loop heli 23.3 58 0.0013 22.2 1.7 14 206-219 39-52 (53)
20 TIGR00151 ispF 2C-methyl-D-ery 22.6 94 0.002 27.7 3.2 29 104-133 105-133 (155)
21 PTZ00405 cytochrome c; Provisi 21.6 30 0.00066 28.6 -0.0 16 229-244 98-113 (114)
22 PF11157 DUF2937: Protein of u 20.8 1.6E+02 0.0034 26.1 4.2 39 207-245 25-70 (167)
No 1
>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins.
Probab=100.00 E-value=4.8e-34 Score=223.14 Aligned_cols=85 Identities=44% Similarity=0.733 Sum_probs=83.6
Q ss_pred hHHHHHHHhcCchHHHHHhccCCHHHHHHHHHHHHHhhcCC-CCCCcceEEEEcHHhHHHHHHHHHhhhHhhcchhhhhH
Q 022994 81 DILLEYVKNVQPEFMELFVKRAPEQVVDAMRQTVTNMIGTL-PPQFFAVTVTTVAENLAQLMYSVMMTGYMFKNAQYRLE 159 (289)
Q Consensus 81 N~Ll~YLqsl~Pe~is~lsk~aSpeV~eaM~qtV~gLLG~L-P~d~F~vtItTsrE~LArLL~SaMMTGYfLRNAEyRL~ 159 (289)
|.||+|||+++||.+++|++++||||+|+|+++|++|||.+ |+++|+++|+|+|++||+|++|+|||||||||||||++
T Consensus 1 n~L~~yi~~l~pe~~~~l~~~~s~ev~e~m~~~v~~llG~l~p~~~~~~~i~~s~~~La~L~~~~mm~GYfLr~~E~R~~ 80 (86)
T PF05542_consen 1 NDLLQYIQSLKPERIQQLSEPASPEVLEAMKQHVSGLLGNLSPSDQFNVTIQTSRENLAQLLAWSMMTGYFLRNAEQRLE 80 (86)
T ss_pred ChHHHHHHHCCHHHHHHhhccCCHHHHHHHHHHHHHHHcCCCCcccCcceeEECHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHhhhc
Q 022994 160 LQQSLE 165 (289)
Q Consensus 160 LErsL~ 165 (289)
||++|.
T Consensus 81 Le~sL~ 86 (86)
T PF05542_consen 81 LERSLK 86 (86)
T ss_pred HHHhcC
Confidence 999974
No 2
>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins.
Probab=95.42 E-value=0.0044 Score=48.90 Aligned_cols=28 Identities=25% Similarity=0.446 Sum_probs=25.7
Q ss_pred chHHHHhhcCCCccccccccccccchhh
Q 022994 234 NELLEYLKTLEPQNLKVRSVASLFIISV 261 (289)
Q Consensus 234 NdLLdYLRSL~Pe~v~ELS~~s~~~~~~ 261 (289)
|+|++|||+++|+.+++|+++.||-+--
T Consensus 1 n~L~~yi~~l~pe~~~~l~~~~s~ev~e 28 (86)
T PF05542_consen 1 NDLLQYIQSLKPERIQQLSEPASPEVLE 28 (86)
T ss_pred ChHHHHHHHCCHHHHHHhhccCCHHHHH
Confidence 8999999999999999999999987643
No 3
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=57.62 E-value=17 Score=27.77 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhh
Q 022994 205 IDAKKYIEFLEAEIEELNRQLGRKA 229 (289)
Q Consensus 205 ~dA~~YI~~LesEl~eL~~q~~~~~ 229 (289)
-|=.+||..|+.||+.++.++.+|.
T Consensus 24 ~EL~~RIa~L~aEI~R~~~~~~~K~ 48 (59)
T PF06698_consen 24 EELEERIALLEAEIARLEAAIAKKS 48 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999998877653
No 4
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=42.35 E-value=28 Score=32.93 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=22.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhh
Q 022994 204 KIDAKKYIEFLEAEIEELNRQLGRK 228 (289)
Q Consensus 204 ~~dA~~YI~~LesEl~eL~~q~~~~ 228 (289)
..+|.+=|..||.||..||.|...-
T Consensus 117 ~~~AlqKIsALEdELs~LRaQIA~I 141 (253)
T PF05308_consen 117 NEAALQKISALEDELSRLRAQIAKI 141 (253)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5679999999999999999998864
No 5
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=36.53 E-value=21 Score=36.92 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=19.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhh
Q 022994 204 KIDAKKYIEFLEAEIEELNRQLGR 227 (289)
Q Consensus 204 ~~dA~~YI~~LesEl~eL~~q~~~ 227 (289)
.++.++=|++|++||++|++|++.
T Consensus 26 ~~~~~qkie~L~kql~~Lk~q~~~ 49 (489)
T PF11853_consen 26 DIDLLQKIEALKKQLEELKAQQDD 49 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhcc
Confidence 455667899999999999998764
No 6
>KOG4119 consensus G protein gamma subunit [Signal transduction mechanisms]
Probab=33.89 E-value=54 Score=25.96 Aligned_cols=36 Identities=28% Similarity=0.392 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHhh---hhhcCcchHHHHhhcCCCc
Q 022994 211 IEFLEAEIEELNRQLGR---KATNGQNELLEYLKTLEPQ 246 (289)
Q Consensus 211 I~~LesEl~eL~~q~~~---~~~~~kNdLLdYLRSL~Pe 246 (289)
+.++++++++||.|+.. +...-..||++|+-.-.++
T Consensus 9 ~~q~k~~VeqLk~e~~~~R~~vS~a~~el~~y~E~~~~~ 47 (71)
T KOG4119|consen 9 KPQMKKEVEQLKLEANIERIKVSKAAAELLEYCETHATE 47 (71)
T ss_pred hHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHhcCcc
Confidence 55666677777766542 2334567899998776644
No 7
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=31.08 E-value=35 Score=35.82 Aligned_cols=15 Identities=47% Similarity=0.811 Sum_probs=13.1
Q ss_pred cCcchHHHHhhcCCC
Q 022994 231 NGQNELLEYLKTLEP 245 (289)
Q Consensus 231 ~~kNdLLdYLRSL~P 245 (289)
+++.||++|++-|+-
T Consensus 438 ~EkQeL~~yi~~Le~ 452 (546)
T PF07888_consen 438 EEKQELLEYIERLEQ 452 (546)
T ss_pred HHHHHHHHHHHHHHH
Confidence 479999999999874
No 8
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=30.77 E-value=53 Score=34.08 Aligned_cols=51 Identities=25% Similarity=0.382 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHH-------HHHHHHHhhhhhcCcchHHHHhhcCCCccccccccccccc
Q 022994 207 AKKYIEFLEAEI-------EELNRQLGRKATNGQNELLEYLKTLEPQNLKVRSVASLFI 258 (289)
Q Consensus 207 A~~YI~~LesEl-------~eL~~q~~~~~~~~kNdLLdYLRSL~Pe~v~ELS~~s~~~ 258 (289)
-++||..||.++ .+|++|+.+.+. ..-.||+=||-|+-.-..--+..+.-+
T Consensus 270 KkeYid~LE~rv~~~taeNqeL~kkV~~Le~-~N~sLl~qL~klQt~v~q~an~s~qt~ 327 (472)
T KOG0709|consen 270 KKEYIDGLESRVSAFTAENQELQKKVEELEL-SNRSLLAQLKKLQTLVIQVANKSTQTS 327 (472)
T ss_pred HhhHHHHHhhhhhhcccCcHHHHHHHHHHhh-ccHHHHHHHHHHHHHHhhcccchhccc
Confidence 578999999988 457777776533 345799999998875544444333333
No 9
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.27 E-value=72 Score=25.74 Aligned_cols=19 Identities=42% Similarity=0.566 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 022994 206 DAKKYIEFLEAEIEELNRQ 224 (289)
Q Consensus 206 dA~~YI~~LesEl~eL~~q 224 (289)
.|.+-|..|+-|+++||.+
T Consensus 15 qAvdTI~LLQmEieELKEk 33 (79)
T COG3074 15 QAIDTITLLQMEIEELKEK 33 (79)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999864
No 10
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=29.06 E-value=56 Score=26.29 Aligned_cols=42 Identities=24% Similarity=0.390 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCcchHHHHhhc--CCCcccccc
Q 022994 207 AKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKT--LEPQNLKVR 251 (289)
Q Consensus 207 A~~YI~~LesEl~eL~~q~~~~~~~~kNdLLdYLRS--L~Pe~v~EL 251 (289)
+.+=|..+|..|.+|.+|..+ ++.-++++-.|+ |+|++|.++
T Consensus 13 ~k~Kiae~Q~rlK~Le~qk~E---~EN~EIv~~VR~~~mtp~eL~~~ 56 (83)
T PF14193_consen 13 TKEKIAELQARLKELEAQKTE---AENLEIVQMVRSMKMTPEELAAF 56 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcCCCHHHHHHH
Confidence 445566777777777666554 455666666665 456666554
No 11
>smart00224 GGL G protein gamma subunit-like motifs.
Probab=26.44 E-value=48 Score=24.89 Aligned_cols=31 Identities=35% Similarity=0.643 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHhh---hhhcCcchHHHHhhc
Q 022994 212 EFLEAEIEELNRQLGR---KATNGQNELLEYLKT 242 (289)
Q Consensus 212 ~~LesEl~eL~~q~~~---~~~~~kNdLLdYLRS 242 (289)
++++.+++.||+++.+ +....=.+|+.|...
T Consensus 2 ~~~~~~ve~Lr~el~~~RikvS~a~~~li~y~e~ 35 (63)
T smart00224 2 DQLRKEVEQLRKELSRERIKVSKAAEELLAYCEQ 35 (63)
T ss_pred hHHHHHHHHHHHHHCCceehHHHHHHHHHHHHHc
Confidence 5688899999998886 344455688888764
No 12
>PRK00084 ispF 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed
Probab=26.31 E-value=70 Score=28.61 Aligned_cols=29 Identities=24% Similarity=0.385 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCcceEEEEc
Q 022994 104 EQVVDAMRQTVTNMIGTLPPQFFAVTVTTV 133 (289)
Q Consensus 104 peV~eaM~qtV~gLLG~LP~d~F~vtItTs 133 (289)
..-+++|+++|..+||. |.+..+++.||+
T Consensus 108 ~p~~~~m~~~la~~L~i-~~~~V~iKatT~ 136 (159)
T PRK00084 108 APHIEEMRANIAEDLGI-PLDDVNVKATTT 136 (159)
T ss_pred hHHHHHHHHHHHHHhCC-CcceEEEEEecC
Confidence 34789999999999994 878888777754
No 13
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=25.34 E-value=30 Score=23.86 Aligned_cols=18 Identities=33% Similarity=0.798 Sum_probs=15.0
Q ss_pred cCcchHHHHhhcCCCccc
Q 022994 231 NGQNELLEYLKTLEPQNL 248 (289)
Q Consensus 231 ~~kNdLLdYLRSL~Pe~v 248 (289)
+.++||++|++.+.|+++
T Consensus 18 ad~~~L~~~i~~~~p~~v 35 (43)
T PF07521_consen 18 ADREELLEFIEQLNPRKV 35 (43)
T ss_dssp -BHHHHHHHHHHHCSSEE
T ss_pred CCHHHHHHHHHhcCCCEE
Confidence 468999999999999765
No 14
>PF02258 SLT_beta: Shiga-like toxin beta subunit; InterPro: IPR003189 This family represents the B subunit of shiga-like toxin (SLT or verotoxin) produced by some strains of Escherichia coli associated with hemorrhagic colitis and hemolytic uremic syndrome. SLT s are composed of one enzymatic A subunit and five cell binding B subunits.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0005576 extracellular region; PDB: 2GA4_B 1R4P_D 1BOS_I 4ULL_A 2C5C_I 1QNU_C 1CZW_F 1D1I_C 1CZG_D 2XSC_D ....
Probab=25.23 E-value=46 Score=26.46 Aligned_cols=19 Identities=32% Similarity=0.249 Sum_probs=16.4
Q ss_pred EEcHHhHHHHHHHHHhhhH
Q 022994 131 TTVAENLAQLMYSVMMTGY 149 (289)
Q Consensus 131 tTsrE~LArLL~SaMMTGY 149 (289)
-|+|-+|+.+|.|+.++|-
T Consensus 31 ~Ts~wnL~~~L~sa~~~G~ 49 (70)
T PF02258_consen 31 WTSRWNLQSPLLSAQITGM 49 (70)
T ss_dssp EE-STTHHHHHHHHHHHTS
T ss_pred eccCcccccceeeeEEcce
Confidence 4899999999999999994
No 15
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=24.05 E-value=53 Score=24.02 Aligned_cols=10 Identities=10% Similarity=0.308 Sum_probs=4.8
Q ss_pred CCcccccccc
Q 022994 244 EPQNLKVRSV 253 (289)
Q Consensus 244 ~Pe~v~ELS~ 253 (289)
+|+.+.++++
T Consensus 53 ~~~~ie~~AR 62 (80)
T PF04977_consen 53 DPDYIEKVAR 62 (80)
T ss_pred CHHHHHHHHH
Confidence 4555544443
No 16
>smart00338 BRLZ basic region leucin zipper.
Probab=23.87 E-value=1.1e+02 Score=22.33 Aligned_cols=21 Identities=38% Similarity=0.428 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 022994 207 AKKYIEFLEAEIEELNRQLGR 227 (289)
Q Consensus 207 A~~YI~~LesEl~eL~~q~~~ 227 (289)
-++||..||.+++.|..+...
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~ 44 (65)
T smart00338 24 KKAEIEELERKVEQLEAENER 44 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 367999999998888776554
No 17
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=23.78 E-value=98 Score=19.86 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHh
Q 022994 211 IEFLEAEIEELNRQLG 226 (289)
Q Consensus 211 I~~LesEl~eL~~q~~ 226 (289)
|..|+++|.+|++|+.
T Consensus 3 ~~rlr~rI~dLer~L~ 18 (23)
T PF04508_consen 3 MNRLRNRISDLERQLS 18 (23)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5667777777777765
No 18
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=23.51 E-value=1.2e+02 Score=23.18 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 022994 206 DAKKYIEFLEAEIEELNRQLGR 227 (289)
Q Consensus 206 dA~~YI~~LesEl~eL~~q~~~ 227 (289)
||.+.+..|+.||+.|++++.+
T Consensus 36 eaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 36 EAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888888888765
No 19
>smart00353 HLH helix loop helix domain.
Probab=23.31 E-value=58 Score=22.24 Aligned_cols=14 Identities=36% Similarity=0.513 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHH
Q 022994 206 DAKKYIEFLEAEIE 219 (289)
Q Consensus 206 dA~~YI~~LesEl~ 219 (289)
+|.+||..|+.+++
T Consensus 39 ~ai~yi~~L~~~~~ 52 (53)
T smart00353 39 LAIEYIKSLQEELQ 52 (53)
T ss_pred HHHHHHHHHHHHHh
Confidence 59999999998875
No 20
>TIGR00151 ispF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase. Members of this protein family are 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, the IspF protein of the deoxyxylulose (non-mevalonate) pathway of IPP biosynthesis. This protein occurs as an IspDF bifunctional fusion protein in about 20 percent of bacterial genomes.
Probab=22.60 E-value=94 Score=27.73 Aligned_cols=29 Identities=28% Similarity=0.488 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCcceEEEEc
Q 022994 104 EQVVDAMRQTVTNMIGTLPPQFFAVTVTTV 133 (289)
Q Consensus 104 peV~eaM~qtV~gLLG~LP~d~F~vtItTs 133 (289)
..-+++|+++|..+|+ +|.+..+++.+|+
T Consensus 105 ~p~~~~m~~~la~~L~-~~~~~V~iKatT~ 133 (155)
T TIGR00151 105 LPHIPAMRENIAELLG-IPLDSVNVKATTT 133 (155)
T ss_pred hHHHHHHHHHHHHHhC-CCcceEEEEEecC
Confidence 3478999999999999 4888888877764
No 21
>PTZ00405 cytochrome c; Provisional
Probab=21.60 E-value=30 Score=28.63 Aligned_cols=16 Identities=25% Similarity=0.601 Sum_probs=13.3
Q ss_pred hhcCcchHHHHhhcCC
Q 022994 229 ATNGQNELLEYLKTLE 244 (289)
Q Consensus 229 ~~~~kNdLLdYLRSL~ 244 (289)
..+++.||++||++|.
T Consensus 98 ~~~dr~~liaYL~sl~ 113 (114)
T PTZ00405 98 KPQERADVIAYLETLK 113 (114)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 3567899999999985
No 22
>PF11157 DUF2937: Protein of unknown function (DUF2937); InterPro: IPR022584 This family of proteins with unknown function appears to be found mainly in Proteobacteria.
Probab=20.82 E-value=1.6e+02 Score=26.10 Aligned_cols=39 Identities=21% Similarity=0.335 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh-------hcCcchHHHHhhcCCC
Q 022994 207 AKKYIEFLEAEIEELNRQLGRKA-------TNGQNELLEYLKTLEP 245 (289)
Q Consensus 207 A~~YI~~LesEl~eL~~q~~~~~-------~~~kNdLLdYLRSL~P 245 (289)
+++|-+.|..-++|++.++..++ +...+++++.++.-+.
T Consensus 25 ~~qY~QrL~g~~~e~~~~v~~F~~~A~~~f~~~~~~li~~~~~s~d 70 (167)
T PF11157_consen 25 AQQYQQRLGGHLDELRRQVAGFQATAARYFGGDREALIAHYRQSSD 70 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 78999999999999999988642 3356777777766655
Done!