Query 022994
Match_columns 289
No_of_seqs 111 out of 139
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 14:33:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022994.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022994hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hlo_A Protein (transcription 80.4 1.5 5.2E-05 32.7 3.6 23 206-228 54-76 (80)
2 1nkp_B MAX protein, MYC proto- 76.6 2.8 9.6E-05 31.3 4.1 23 206-228 44-66 (83)
3 1am9_A Srebp-1A, protein (ster 73.6 2.3 8E-05 32.0 3.0 22 206-227 47-68 (82)
4 1nlw_A MAD protein, MAX dimeri 57.5 11 0.00036 28.5 3.8 22 206-227 44-65 (80)
5 2er8_A Regulatory protein Leu3 55.8 8.3 0.00028 27.1 2.9 24 206-229 46-69 (72)
6 1zme_C Proline utilization tra 53.1 14 0.00047 25.6 3.6 23 207-229 42-64 (70)
7 1use_A VAsp, vasodilator-stimu 50.6 20 0.0007 25.3 4.0 33 205-242 4-37 (45)
8 1nkp_A C-MYC, MYC proto-oncoge 49.1 15 0.0005 28.1 3.4 21 206-226 49-69 (88)
9 4ati_A MITF, microphthalmia-as 43.7 12 0.00041 30.1 2.3 21 206-226 71-91 (118)
10 3he5_A Synzip1; heterodimeric 41.5 26 0.0009 24.6 3.5 32 210-241 4-37 (49)
11 4ath_A MITF, microphthalmia-as 41.1 14 0.00048 28.8 2.3 38 206-243 36-75 (83)
12 1dh3_A Transcription factor CR 38.7 28 0.00096 24.6 3.3 20 208-227 21-40 (55)
13 3u5v_A Protein MAX, transcript 36.8 15 0.00053 27.5 1.8 16 206-221 49-64 (76)
14 1xkm_B Distinctin chain B; por 34.9 18 0.00061 22.7 1.5 17 204-220 6-22 (26)
15 3coq_A Regulatory protein GAL4 32.5 60 0.0021 23.2 4.4 22 207-228 43-64 (89)
16 1gk6_A Vimentin; intermediate 32.2 43 0.0015 23.9 3.5 23 206-228 4-26 (59)
17 1ci6_A Transcription factor AT 28.1 45 0.0015 24.0 3.0 19 208-226 22-40 (63)
18 3i00_A HIP-I, huntingtin-inter 25.8 52 0.0018 26.8 3.3 24 204-227 35-58 (120)
19 1gd2_E Transcription factor PA 25.4 35 0.0012 25.5 2.1 19 208-226 28-46 (70)
20 1got_G GT-gamma; complex (GTP- 25.1 32 0.0011 25.9 1.8 32 211-242 19-53 (73)
21 1jdl_A C552, cytochrome C2, IS 23.3 21 0.00073 26.6 0.5 16 231-246 106-121 (121)
22 1n7s_A Vesicle-associated memb 22.6 52 0.0018 23.2 2.4 27 93-120 4-30 (63)
23 1iv3_A 2-C-methyl-D-erythritol 22.6 54 0.0019 28.0 2.9 30 106-137 108-137 (152)
24 3re3_A 2-C-methyl-D-erythritol 22.4 55 0.0019 28.2 3.0 26 107-133 115-140 (162)
25 3b5n_A Synaptobrevin homolog 1 21.2 59 0.002 22.9 2.5 25 95-120 4-28 (61)
26 2pmp_A 2-C-methyl-D-erythritol 20.3 64 0.0022 27.8 2.9 30 106-137 111-140 (160)
27 3v5w_G G gamma-I, guanine nucl 20.3 53 0.0018 25.3 2.2 32 211-242 15-49 (77)
28 1t0a_A 2C-methyl-D-erythritol 20.1 63 0.0022 27.8 2.9 27 106-133 110-136 (159)
No 1
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=80.40 E-value=1.5 Score=32.68 Aligned_cols=23 Identities=13% Similarity=0.375 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhh
Q 022994 206 DAKKYIEFLEAEIEELNRQLGRK 228 (289)
Q Consensus 206 dA~~YI~~LesEl~eL~~q~~~~ 228 (289)
.|.+||..|+.++++|+.++.+.
T Consensus 54 ~Ai~YI~~L~~~~~~L~~e~~~L 76 (80)
T 1hlo_A 54 KATEYIQYMRRKNHTHQQDIDDL 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999887754
No 2
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=76.55 E-value=2.8 Score=31.27 Aligned_cols=23 Identities=13% Similarity=0.375 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhh
Q 022994 206 DAKKYIEFLEAEIEELNRQLGRK 228 (289)
Q Consensus 206 dA~~YI~~LesEl~eL~~q~~~~ 228 (289)
.|.+||..|+.++++|+.++.+.
T Consensus 44 ~Ai~YI~~L~~~~~~l~~e~~~L 66 (83)
T 1nkp_B 44 KATEYIQYMRRKNHTHQQDIDDL 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999888888766643
No 3
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=73.56 E-value=2.3 Score=32.04 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 022994 206 DAKKYIEFLEAEIEELNRQLGR 227 (289)
Q Consensus 206 dA~~YI~~LesEl~eL~~q~~~ 227 (289)
+|.+||..|+.++++|+.+..+
T Consensus 47 ~Ai~YI~~Lq~~~~~L~~e~~~ 68 (82)
T 1am9_A 47 KAIDYIRFLQHSNQKLKQENLS 68 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999998887664
No 4
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=57.46 E-value=11 Score=28.54 Aligned_cols=22 Identities=27% Similarity=0.203 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 022994 206 DAKKYIEFLEAEIEELNRQLGR 227 (289)
Q Consensus 206 dA~~YI~~LesEl~eL~~q~~~ 227 (289)
.|.+||..|+.+..++..++.+
T Consensus 44 kA~~yI~~L~~~~~~l~~e~~~ 65 (80)
T 1nlw_A 44 KAKLHIKKLEDSDRKAVHQIDQ 65 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999988777766543
No 5
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=55.81 E-value=8.3 Score=27.10 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhh
Q 022994 206 DAKKYIEFLEAEIEELNRQLGRKA 229 (289)
Q Consensus 206 dA~~YI~~LesEl~eL~~q~~~~~ 229 (289)
....||+.||.+|++|+.++....
T Consensus 46 ~~~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 46 YKRARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHh
Confidence 457999999999999999887643
No 6
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=53.06 E-value=14 Score=25.64 Aligned_cols=23 Identities=17% Similarity=0.416 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 022994 207 AKKYIEFLEAEIEELNRQLGRKA 229 (289)
Q Consensus 207 A~~YI~~LesEl~eL~~q~~~~~ 229 (289)
...||+.|+.++++|++++.+..
T Consensus 42 ~~~~~~~L~~ri~~Le~~l~~l~ 64 (70)
T 1zme_C 42 STKYLQQLQKDLNDKTEENNRLK 64 (70)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 36799999999999998887643
No 7
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=50.63 E-value=20 Score=25.25 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHH-HHHHHHHHhhhhhcCcchHHHHhhc
Q 022994 205 IDAKKYIEFLEAE-IEELNRQLGRKATNGQNELLEYLKT 242 (289)
Q Consensus 205 ~dA~~YI~~LesE-l~eL~~q~~~~~~~~kNdLLdYLRS 242 (289)
+++.+ ++.+..| |+|+|++++.. |||++|=+|+
T Consensus 4 ~~~~d-le~~KqEIL~E~RkElqK~----K~EIIeAi~~ 37 (45)
T 1use_A 4 SDYSD-LQRVKQELLEEVKKELQKV----KEEIIEAFVQ 37 (45)
T ss_dssp CCHHH-HHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 44444 4555555 47888877753 6778887775
No 8
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=49.12 E-value=15 Score=28.15 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 022994 206 DAKKYIEFLEAEIEELNRQLG 226 (289)
Q Consensus 206 dA~~YI~~LesEl~eL~~q~~ 226 (289)
.|.+||..|+.+...+..++.
T Consensus 49 ~A~~YI~~L~~~~~~l~~~~~ 69 (88)
T 1nkp_A 49 KATAYILSVQAEEQKLISEED 69 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 599999999998777665544
No 9
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=43.73 E-value=12 Score=30.07 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 022994 206 DAKKYIEFLEAEIEELNRQLG 226 (289)
Q Consensus 206 dA~~YI~~LesEl~eL~~q~~ 226 (289)
.|.+||..|+.+++.|+....
T Consensus 71 ~aieYIk~Lq~~~~~l~~~~~ 91 (118)
T 4ati_A 71 ASVDYIRKLQREQQRAKDLEN 91 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999886543
No 10
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=41.47 E-value=26 Score=24.64 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHhh--hhhcCcchHHHHhh
Q 022994 210 YIEFLEAEIEELNRQLGR--KATNGQNELLEYLK 241 (289)
Q Consensus 210 YI~~LesEl~eL~~q~~~--~~~~~kNdLLdYLR 241 (289)
.+.+||.|+..|..+..- +..--++||..||.
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdliayle 37 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLE 37 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHH
Confidence 467888888888765442 22335789999984
No 11
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=41.12 E-value=14 Score=28.79 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhh--hcCcchHHHHhhcC
Q 022994 206 DAKKYIEFLEAEIEELNRQLGRKA--TNGQNELLEYLKTL 243 (289)
Q Consensus 206 dA~~YI~~LesEl~eL~~q~~~~~--~~~kNdLLdYLRSL 243 (289)
-|.+||..|+.|.+.++....+.. ......|+.-++-|
T Consensus 36 ksvdYI~~Lq~e~~r~~e~e~r~k~le~~n~~l~~riqEL 75 (83)
T 4ath_A 36 ASVDYIRKLQREQQRAKDLENRQKKLEHANRHLLLRVQEL 75 (83)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 389999999999988887655421 12233455444443
No 12
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=38.65 E-value=28 Score=24.59 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 022994 208 KKYIEFLEAEIEELNRQLGR 227 (289)
Q Consensus 208 ~~YI~~LesEl~eL~~q~~~ 227 (289)
++||..||.++..|..+...
T Consensus 21 k~~~~~LE~~v~~L~~eN~~ 40 (55)
T 1dh3_A 21 KEYVKSLENRVAVLENQNKT 40 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 58999999999988876554
No 13
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=36.78 E-value=15 Score=27.54 Aligned_cols=16 Identities=31% Similarity=0.252 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHH
Q 022994 206 DAKKYIEFLEAEIEEL 221 (289)
Q Consensus 206 dA~~YI~~LesEl~eL 221 (289)
.|.+||..|+.++.|+
T Consensus 49 ~AieYI~~Lq~~l~e~ 64 (76)
T 3u5v_A 49 QAVQVILGLEQQVRER 64 (76)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3999999999998875
No 14
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=34.89 E-value=18 Score=22.68 Aligned_cols=17 Identities=35% Similarity=0.675 Sum_probs=13.1
Q ss_pred chhHHHHHHHHHHHHHH
Q 022994 204 KIDAKKYIEFLEAEIEE 220 (289)
Q Consensus 204 ~~dA~~YI~~LesEl~e 220 (289)
-+||.+|+++|-..+..
T Consensus 6 liearkyleqlhrklkn 22 (26)
T 1xkm_B 6 LIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 47899999998776643
No 15
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=32.49 E-value=60 Score=23.18 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 022994 207 AKKYIEFLEAEIEELNRQLGRK 228 (289)
Q Consensus 207 A~~YI~~LesEl~eL~~q~~~~ 228 (289)
...|+..|+.+|++|...+.+.
T Consensus 43 ~~~~~~~L~~r~~~le~~l~~l 64 (89)
T 3coq_A 43 TRAHLTEVESRLERLEQLFLLI 64 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999888764
No 16
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=32.24 E-value=43 Score=23.85 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhh
Q 022994 206 DAKKYIEFLEAEIEELNRQLGRK 228 (289)
Q Consensus 206 dA~~YI~~LesEl~eL~~q~~~~ 228 (289)
+++.-|..|++++.++|.++.+.
T Consensus 4 ~~q~~i~~le~el~~~r~e~~~q 26 (59)
T 1gk6_A 4 QLEDKVEELLSKNYHLENEVARL 26 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788999999999999887764
No 17
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=28.15 E-value=45 Score=23.96 Aligned_cols=19 Identities=26% Similarity=0.282 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 022994 208 KKYIEFLEAEIEELNRQLG 226 (289)
Q Consensus 208 ~~YI~~LesEl~eL~~q~~ 226 (289)
++++..|+.++++|..+..
T Consensus 22 k~~~~~le~~~~~L~~~N~ 40 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNE 40 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3457777777777765433
No 18
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=25.82 E-value=52 Score=26.81 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=20.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhh
Q 022994 204 KIDAKKYIEFLEAEIEELNRQLGR 227 (289)
Q Consensus 204 ~~dA~~YI~~LesEl~eL~~q~~~ 227 (289)
..+|+.||.+|+.+|.+|..++..
T Consensus 35 ~~E~q~~v~ql~~~i~~Le~eL~e 58 (120)
T 3i00_A 35 KTESQRVVLQLKGHVSELEADLAE 58 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778999999999988888877664
No 19
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=25.39 E-value=35 Score=25.51 Aligned_cols=19 Identities=16% Similarity=0.253 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 022994 208 KKYIEFLEAEIEELNRQLG 226 (289)
Q Consensus 208 ~~YI~~LesEl~eL~~q~~ 226 (289)
.+||..||.+|.+|+....
T Consensus 28 ~~~i~~LE~~v~~le~~~~ 46 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHS 46 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5799999999988876544
No 20
>1got_G GT-gamma; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: a.137.3.1 PDB: 1tbg_E 2trc_G 1b9y_B 1b9x_B 1a0r_G*
Probab=25.12 E-value=32 Score=25.90 Aligned_cols=32 Identities=16% Similarity=0.358 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHhh---hhhcCcchHHHHhhc
Q 022994 211 IEFLEAEIEELNRQLGR---KATNGQNELLEYLKT 242 (289)
Q Consensus 211 I~~LesEl~eL~~q~~~---~~~~~kNdLLdYLRS 242 (289)
+++|+.+++.||.|+.+ +....-.+|+.|...
T Consensus 19 ~~~lr~~veqLr~el~~~RikVS~aa~~L~~Yce~ 53 (73)
T 1got_G 19 KDKLKMEVDQLKKEVTLERMLVSKCCEEFRDYVEE 53 (73)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCchhhHHHHHHHHHHHHHh
Confidence 56788888888888774 334445677777753
No 21
>1jdl_A C552, cytochrome C2, ISO-2; alpha helix, electron transport; HET: HEM; 1.70A {Rhodospirillum centenum} SCOP: a.3.1.1
Probab=23.28 E-value=21 Score=26.61 Aligned_cols=16 Identities=31% Similarity=0.750 Sum_probs=12.9
Q ss_pred cCcchHHHHhhcCCCc
Q 022994 231 NGQNELLEYLKTLEPQ 246 (289)
Q Consensus 231 ~~kNdLLdYLRSL~Pe 246 (289)
++..+|.+||++|.++
T Consensus 106 ~ei~~l~aYL~sl~~~ 121 (121)
T 1jdl_A 106 QERKDVVAYLKQFSPQ 121 (121)
T ss_dssp HHHHHHHHHHGGGCC-
T ss_pred HHHHHHHHHHHHcccC
Confidence 5677999999999874
No 22
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=22.61 E-value=52 Score=23.25 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=20.8
Q ss_pred hHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 022994 93 EFMELFVKRAPEQVVDAMRQTVTNMIGT 120 (289)
Q Consensus 93 e~is~lsk~aSpeV~eaM~qtV~gLLG~ 120 (289)
+.+..+.... .+|+.+|..||..+|..
T Consensus 4 d~l~~v~~~l-~ev~~iM~~NI~~vl~R 30 (63)
T 1n7s_A 4 RRLQQTQAQV-DEVVDIMRVNVDKVLER 30 (63)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 4556665555 79999999999999863
No 23
>1iv3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, non-mevalonate, riken structural genomics/proteomics initiative, RSGI; 1.52A {Thermus thermophilus} SCOP: d.79.5.1 PDB: 1iv2_A 1iv4_A* 1iv1_A
Probab=22.56 E-value=54 Score=28.01 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCcceEEEEcHHhH
Q 022994 106 VVDAMRQTVTNMIGTLPPQFFAVTVTTVAENL 137 (289)
Q Consensus 106 V~eaM~qtV~gLLG~LP~d~F~vtItTsrE~L 137 (289)
-.++|+++|..+|| +|.++.+|+.||+ |.|
T Consensus 108 ~~~~m~~~ia~~L~-~~~~~V~vKAtT~-E~L 137 (152)
T 1iv3_A 108 HRKALVDSLSRLMR-LPQDRIGLTFKTS-EGL 137 (152)
T ss_dssp GHHHHHHHHHHHHT-CCGGGEEEEEECC-TTS
T ss_pred HHHHHHHHHHHHhC-CCCceEEEEEecC-CCC
Confidence 36899999999997 5778888877754 444
No 24
>3re3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; structural genomics, center for structural genomics of infec diseases, csgid; 2.65A {Francisella tularensis subsp} SCOP: d.79.5.0
Probab=22.39 E-value=55 Score=28.25 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhhcCCCCCCcceEEEEc
Q 022994 107 VDAMRQTVTNMIGTLPPQFFAVTVTTV 133 (289)
Q Consensus 107 ~eaM~qtV~gLLG~LP~d~F~vtItTs 133 (289)
.++|+++|..+|| +|.++.+|+.||+
T Consensus 115 ~~~m~~~la~~L~-~~~~~V~vKAtT~ 140 (162)
T 3re3_A 115 IEKMRACLANILE-IQISQINIKATTT 140 (162)
T ss_dssp HHHHHHHHHHHHT-SCGGGEEEEEECC
T ss_pred HHHHHHHHHHHHC-CCCceEEEEEecC
Confidence 7899999999998 5778888887764
No 25
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=21.22 E-value=59 Score=22.93 Aligned_cols=25 Identities=12% Similarity=0.231 Sum_probs=18.3
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhhcC
Q 022994 95 MELFVKRAPEQVVDAMRQTVTNMIGT 120 (289)
Q Consensus 95 is~lsk~aSpeV~eaM~qtV~gLLG~ 120 (289)
+..+.... .||+++|..||..+|..
T Consensus 4 l~~vq~~l-~evk~iM~~NI~~vl~R 28 (61)
T 3b5n_A 4 TAELQAEI-DDTVGIMRDNINKVAER 28 (61)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 34444444 78999999999998863
No 26
>2pmp_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; plant enzymes, MEP pathway, isoprenoid proteins, CMP, zinc IONS, lyase; HET: C5P; 2.30A {Arabidopsis thaliana}
Probab=20.29 E-value=64 Score=27.78 Aligned_cols=30 Identities=17% Similarity=0.428 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCcceEEEEcHHhH
Q 022994 106 VVDAMRQTVTNMIGTLPPQFFAVTVTTVAENL 137 (289)
Q Consensus 106 V~eaM~qtV~gLLG~LP~d~F~vtItTsrE~L 137 (289)
-.++|+++|..+|| +|.++.+|+.||+ |.|
T Consensus 111 ~~~~m~~~ia~~L~-~~~~~V~vKAtT~-E~L 140 (160)
T 2pmp_A 111 HKETIRSNLSKLLG-ADPSVVNLKAKTH-EKV 140 (160)
T ss_dssp GHHHHHHHHHHHHT-CCGGGEEEEEECC-TTC
T ss_pred HHHHHHHHHHHHHC-CCcceEEEEEecC-CCC
Confidence 46899999999997 5778888877754 444
No 27
>3v5w_G G gamma-I, guanine nucleotide-binding protein G(I)/G(S)/G(O) gamma-2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Bos taurus} PDB: 1xhm_B 3pvu_G* 3cik_G 3krw_G* 3krx_G* 3psc_G 1omw_G* 3pvw_G* 3uzs_G 1gp2_G* 1gg2_G* 2bcj_G* 3ah8_G* 2qns_B 3kj5_B 3sn6_G*
Probab=20.29 E-value=53 Score=25.26 Aligned_cols=32 Identities=22% Similarity=0.394 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHh--h-hhhcCcchHHHHhhc
Q 022994 211 IEFLEAEIEELNRQLG--R-KATNGQNELLEYLKT 242 (289)
Q Consensus 211 I~~LesEl~eL~~q~~--~-~~~~~kNdLLdYLRS 242 (289)
|.+++..|++||.|.. | +....-.||.+|.-.
T Consensus 15 i~q~rk~VeQLr~Ea~i~RikVSqaaadL~~yc~~ 49 (77)
T 3v5w_G 15 IAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEA 49 (77)
T ss_dssp HHHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHh
Confidence 6777888888888755 2 344455678888754
No 28
>1t0a_A 2C-methyl-D-erythritol 2,4-cyclodiphosphate synth; mixed alpha beta, homotrimer, synthase, lyase; HET: FPP; 1.60A {Shewanella oneidensis} SCOP: d.79.5.1 PDB: 1vh8_A* 1vha_A* 1jn1_A 3fpi_A* 3f6m_A*
Probab=20.12 E-value=63 Score=27.79 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCcceEEEEc
Q 022994 106 VVDAMRQTVTNMIGTLPPQFFAVTVTTV 133 (289)
Q Consensus 106 V~eaM~qtV~gLLG~LP~d~F~vtItTs 133 (289)
-.++|+++|..+|| +|.++.+|+.||+
T Consensus 110 ~~~~m~~~ia~~L~-~~~~~V~vKAtT~ 136 (159)
T 1t0a_A 110 HIEDMRQVLAADLN-ADVADINVKATTT 136 (159)
T ss_dssp GHHHHHHHHHHHTT-CCGGGEEEEEECC
T ss_pred HHHHHHHHHHHHhC-CCCceEEEEEecC
Confidence 36899999999997 6778888887764
Done!