Query 022995
Match_columns 289
No_of_seqs 203 out of 1211
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 07:40:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022995.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022995hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00052 prolyl 4-hydroxylase; 100.0 3.9E-56 8.5E-61 412.5 24.2 250 19-288 3-256 (310)
2 KOG1591 Prolyl 4-hydroxylase a 100.0 5.4E-51 1.2E-55 374.0 15.8 202 72-288 81-288 (289)
3 smart00702 P4Hc Prolyl 4-hydro 100.0 2.3E-36 5E-41 259.9 17.7 175 86-283 1-178 (178)
4 PRK05467 Fe(II)-dependent oxyg 100.0 6.2E-28 1.3E-32 214.9 15.2 167 88-287 2-181 (226)
5 PHA02813 hypothetical protein; 99.7 5.8E-17 1.3E-21 150.5 13.0 147 100-279 25-177 (354)
6 PHA02869 C4L/C10L-like gene fa 99.7 8.9E-17 1.9E-21 151.1 11.4 135 111-280 45-187 (418)
7 PF13640 2OG-FeII_Oxy_3: 2OG-F 99.6 3.7E-16 8.1E-21 121.7 6.8 96 169-283 1-100 (100)
8 COG3128 PiuC Uncharacterized i 99.5 1.5E-13 3.3E-18 117.3 10.3 167 86-286 2-183 (229)
9 KOG3710 EGL-Nine (EGLN) protei 98.8 7E-08 1.5E-12 85.3 11.0 171 85-285 52-240 (280)
10 PF03336 Pox_C4_C10: Poxvirus 98.6 2.6E-07 5.6E-12 86.2 10.4 124 128-279 38-164 (339)
11 PF13661 2OG-FeII_Oxy_4: 2OG-F 98.5 1.4E-07 2.9E-12 69.3 5.2 53 165-221 9-65 (70)
12 PF03171 2OG-FeII_Oxy: 2OG-Fe( 98.4 2E-07 4.4E-12 72.0 4.2 90 167-283 2-97 (98)
13 COG3751 EGL-9 Predicted prolin 98.1 5E-05 1.1E-09 68.9 12.3 101 168-286 137-242 (252)
14 TIGR02408 ectoine_ThpD ectoine 97.9 0.0003 6.5E-09 64.9 13.4 180 86-280 28-245 (277)
15 PHA02866 Hypothetical protein; 97.8 7.1E-05 1.5E-09 68.8 8.3 129 111-279 32-164 (333)
16 PF09859 Oxygenase-NA: Oxygena 97.7 0.00014 3.1E-09 61.5 7.4 101 169-284 64-172 (173)
17 PF05721 PhyH: Phytanoyl-CoA d 97.6 0.00022 4.8E-09 60.8 7.6 168 87-273 5-206 (211)
18 PF13759 2OG-FeII_Oxy_5: Putat 97.4 0.00045 9.7E-09 53.9 6.6 89 170-278 3-98 (101)
19 TIGR02466 conserved hypothetic 97.3 0.0024 5.2E-08 56.4 10.9 93 166-278 95-194 (201)
20 PF13532 2OG-FeII_Oxy_2: 2OG-F 97.1 0.0045 9.8E-08 53.3 9.7 157 88-273 2-177 (194)
21 TIGR01762 chlorin-enz chlorina 97.0 0.014 3.1E-07 54.2 12.9 180 86-284 14-249 (288)
22 KOG3844 Predicted component of 96.9 0.0091 2E-07 57.2 10.4 110 153-285 103-218 (476)
23 PF12851 Tet_JBP: Oxygenase do 96.1 0.018 3.9E-07 49.5 6.9 80 178-283 85-170 (171)
24 PHA02923 hypothetical protein; 95.9 0.049 1.1E-06 50.4 8.9 98 145-280 43-142 (315)
25 PRK15401 alpha-ketoglutarate-d 95.4 0.58 1.3E-05 41.7 13.7 160 84-273 16-196 (213)
26 KOG3200 Uncharacterized conser 92.9 0.35 7.6E-06 41.7 6.4 96 81-187 7-108 (224)
27 COG3826 Uncharacterized protei 90.8 1 2.3E-05 39.1 7.1 102 169-285 126-235 (236)
28 PF06822 DUF1235: Protein of u 87.7 3.2 7E-05 38.1 8.3 103 143-279 30-132 (266)
29 PLN03001 oxidoreductase, 2OG-F 87.3 3 6.4E-05 38.3 8.0 108 147-284 88-213 (262)
30 PLN02984 oxidoreductase, 2OG-F 84.7 9 0.00019 36.5 10.1 105 150-284 173-298 (341)
31 PLN02485 oxidoreductase 84.5 5.2 0.00011 37.7 8.4 109 149-285 157-288 (329)
32 PHA02985 hypothetical protein; 80.2 9.3 0.0002 35.0 7.9 102 142-279 36-137 (271)
33 COG3145 AlkB Alkylated DNA rep 78.6 30 0.00064 30.5 10.3 102 128-251 69-170 (194)
34 COG4340 Uncharacterized protei 78.3 1.9 4.1E-05 37.7 2.7 51 204-272 149-201 (226)
35 PLN00417 oxidoreductase, 2OG-F 78.0 14 0.00029 35.3 8.8 88 168-284 204-301 (348)
36 PLN02403 aminocyclopropanecarb 76.7 12 0.00027 34.9 7.9 87 169-284 155-252 (303)
37 PLN02299 1-aminocyclopropane-1 76.2 14 0.0003 34.9 8.2 88 168-284 159-256 (321)
38 PLN02515 naringenin,2-oxogluta 75.1 19 0.00041 34.5 8.9 89 168-284 196-294 (358)
39 PLN02997 flavonol synthase 74.9 16 0.00035 34.5 8.3 88 168-285 184-281 (325)
40 PLN02912 oxidoreductase, 2OG-F 74.8 21 0.00045 34.1 9.1 87 168-284 198-294 (348)
41 PLN02758 oxidoreductase, 2OG-F 74.6 26 0.00057 33.6 9.8 87 168-283 212-309 (361)
42 PLN02216 protein SRG1 74.4 21 0.00046 34.2 9.1 88 168-284 211-308 (357)
43 PLN02639 oxidoreductase, 2OG-F 73.5 32 0.0007 32.5 10.0 105 151-284 166-288 (337)
44 PLN02904 oxidoreductase 73.3 31 0.00068 33.0 9.9 86 168-283 209-304 (357)
45 PLN02365 2-oxoglutarate-depend 73.2 22 0.00048 33.0 8.7 109 148-283 125-248 (300)
46 KOG0143 Iron/ascorbate family 72.7 31 0.00068 32.5 9.7 87 168-282 177-273 (322)
47 PLN02276 gibberellin 20-oxidas 72.5 36 0.00078 32.6 10.1 87 167-283 206-302 (361)
48 PLN02947 oxidoreductase 72.1 35 0.00076 32.9 10.0 86 168-283 226-321 (374)
49 PLN02750 oxidoreductase, 2OG-F 72.1 37 0.0008 32.2 10.1 91 167-285 193-293 (345)
50 PF10014 2OG-Fe_Oxy_2: 2OG-Fe 70.9 4.6 9.9E-05 35.4 3.3 56 198-272 124-179 (195)
51 PLN02254 gibberellin 3-beta-di 70.4 38 0.00083 32.4 9.8 87 168-283 211-307 (358)
52 COG5285 Protein involved in bi 67.0 19 0.00042 33.6 6.6 86 179-277 132-223 (299)
53 TIGR00568 alkb DNA alkylation 66.9 58 0.0013 27.8 9.3 86 146-251 74-159 (169)
54 PLN02156 gibberellin 2-beta-di 64.6 69 0.0015 30.4 10.2 87 168-283 179-277 (335)
55 PF02668 TauD: Taurine catabol 64.4 6.8 0.00015 34.5 3.2 38 236-281 219-258 (258)
56 PTZ00273 oxidase reductase; Pr 63.4 57 0.0012 30.5 9.3 87 168-284 178-275 (320)
57 PLN02393 leucoanthocyanidin di 63.4 37 0.00081 32.5 8.2 88 168-284 214-311 (362)
58 PLN02704 flavonol synthase 61.6 31 0.00068 32.6 7.3 86 169-284 201-296 (335)
59 KOG3959 2-Oxoglutarate- and ir 61.1 9 0.0002 34.8 3.2 96 86-188 72-175 (306)
60 PF13334 DUF4094: Domain of un 60.3 6.8 0.00015 30.4 2.1 19 21-39 4-22 (95)
61 PLN03178 leucoanthocyanidin di 58.0 48 0.001 31.7 8.0 87 168-284 212-308 (360)
62 PF11057 Cortexin: Cortexin of 56.4 14 0.0003 27.4 3.0 30 2-31 14-43 (81)
63 cd00250 CAS_like Clavaminic ac 51.9 18 0.00039 32.6 3.8 40 236-283 218-260 (262)
64 PF11466 Doppel: Prion-like pr 50.2 16 0.00034 22.2 2.0 18 13-30 1-18 (30)
65 PF14033 DUF4246: Protein of u 50.2 32 0.0007 34.6 5.5 88 181-284 364-478 (501)
66 COG3491 PcbC Isopenicillin N s 49.5 79 0.0017 29.9 7.5 90 165-283 172-271 (322)
67 KOG4459 Membrane-associated pr 49.3 3.4 7.4E-05 40.7 -1.5 71 197-284 364-434 (471)
68 PF12729 4HB_MCP_1: Four helix 48.0 8 0.00017 31.4 0.8 30 10-40 1-30 (181)
69 PLN03002 oxidoreductase, 2OG-F 40.6 1.2E+02 0.0027 28.5 7.6 91 168-284 183-284 (332)
70 PF09879 DUF2106: Predicted me 33.4 74 0.0016 26.6 4.2 78 18-97 15-95 (153)
71 cd03528 Rieske_RO_ferredoxin R 31.5 85 0.0019 23.4 4.2 48 204-273 4-51 (98)
72 PRK09965 3-phenylpropionate di 29.9 90 0.0019 24.0 4.1 49 202-273 4-52 (106)
73 PRK09553 tauD taurine dioxygen 29.7 34 0.00075 31.3 1.9 33 181-219 95-127 (277)
74 PF04650 YSIRK_signal: YSIRK t 28.5 38 0.00083 20.1 1.3 23 8-30 4-27 (27)
75 KOG1971 Lysyl hydroxylase [Pos 27.6 55 0.0012 32.1 2.9 79 194-283 277-355 (415)
76 PF10161 DDDD: Putative mitoch 25.0 17 0.00038 27.2 -0.7 26 14-39 34-59 (79)
77 PF12273 RCR: Chitin synthesis 24.6 59 0.0013 26.2 2.3 15 21-35 6-20 (130)
78 PLN03193 beta-1,3-galactosyltr 24.4 72 0.0016 31.3 3.1 37 5-41 4-40 (408)
79 PRK02655 psbI photosystem II r 24.3 66 0.0014 20.6 1.9 12 33-44 17-28 (38)
80 cd03474 Rieske_T4moC Toluene-4 23.7 1.4E+02 0.0031 22.7 4.3 29 237-274 25-53 (108)
81 cd03530 Rieske_NirD_small_Baci 23.5 1.3E+02 0.0029 22.4 4.0 48 206-274 6-53 (98)
82 cd08788 CARD_NOD2_2_CARD15 Cas 23.2 35 0.00075 25.7 0.5 15 91-105 25-39 (81)
83 TIGR02410 carnitine_TMLD trime 22.4 93 0.002 29.7 3.5 39 236-283 311-349 (362)
84 PF02532 PsbI: Photosystem II 22.2 75 0.0016 20.1 1.8 11 27-37 16-26 (36)
85 PF08139 LPAM_1: Prokaryotic m 21.9 84 0.0018 18.3 1.9 13 21-33 10-22 (25)
86 PF11120 DUF2636: Protein of u 21.6 84 0.0018 22.5 2.2 23 19-41 7-29 (62)
87 CHL00024 psbI photosystem II p 20.2 72 0.0016 20.2 1.4 11 34-44 18-28 (36)
No 1
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=100.00 E-value=3.9e-56 Score=412.53 Aligned_cols=250 Identities=36% Similarity=0.617 Sum_probs=201.9
Q ss_pred hhHHHHHHHHHHHHhhhccccccCCcCCCCCchhhhhhccccCCcCCCCCCCCCcccccccEEeecCCcEEEecCCCCHH
Q 022995 19 LPFVFLACLFFFLAGLLGSSLLSQDVTAARPSARVVESVKDEYKWMPHGQAGDDSVTNIPFQVLSWMPRALYFPNFATPE 98 (289)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ls~~P~i~~i~nfLs~e 98 (289)
|..++|++++++-+-+....|+-- ++......+..+.+.+....+++|||+|+|++|+||||++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~kve~lS~~P~i~~~~nfLs~~ 66 (310)
T PLN00052 3 LRGALLALALLLAATAVVPLLLLG----------------EAGDDGVGAVAAAPPFNASRVKAVSWQPRIFVYKGFLSDA 66 (310)
T ss_pred hhhhHHHHHHHHHHHHHhhheeee----------------ccCCcccccccCCCCcCCceEEEecCCCCEEEECCcCCHH
Confidence 334566666666566665555421 0111122233455677788899999999999999999999
Q ss_pred HHHHHHHHhhcCCccceeeecC-CceeecccceeecceEEecCCCChhHHHHHHHHHHHHHcCCCCcccccceeeecCCC
Q 022995 99 QCKSIINMAKLNLRPSTLALRK-GETVDNTQGIRTSSGVFISAAEDESGTLDLIEEKIAKVTMLPRINGEAFNILRYKIG 177 (289)
Q Consensus 99 EC~~Li~~a~~~l~~s~v~~~~-G~~~~~~~~~RtS~~~~l~~~~~~~~i~~~I~~Ri~~~~g~p~~~~E~lqv~rY~~G 177 (289)
||++||+++++.+++|++++.. |++ ..+.+|||+++|+...++ +++++|++||++++++|.++.|++||+||++|
T Consensus 67 Ecd~Li~la~~~l~~S~v~~~~~g~~--~~s~~RTS~~~~l~~~~d--pvv~~I~~Ria~~t~lp~~~~E~lQVlrY~~G 142 (310)
T PLN00052 67 ECDHLVKLAKKKIQRSMVADNKSGKS--VMSEVRTSSGMFLDKRQD--PVVSRIEERIAAWTFLPEENAENIQILRYEHG 142 (310)
T ss_pred HHHHHHHhcccccccceeecCCCCcc--ccCCCEEecceeecCCCC--HHHHHHHHHHHHHhCCCcccCcceEEEecCCC
Confidence 9999999999999999987643 332 357799999999987654 69999999999999999999999999999999
Q ss_pred CccccCcccCCCCCCCCCCCceEEEEEEecCCCCCCcceeccCCCCCC-CCCCCCcccc--cceEEecccccEEEEeecC
Q 022995 178 QKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMN-ADGSYDYQKC--IGLKVKPRQGDGLLFYSLL 254 (289)
Q Consensus 178 ~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv~eGGeT~Fp~~~~~~-~~~~~~~~~~--~~~~V~P~~G~allF~n~~ 254 (289)
|+|++|+|++........+++|++|+|+||||+++||||+||...... ...+..+++| .+++|+|++|+||+|+|++
T Consensus 143 q~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLndv~~GGeT~FP~~~~~~~~~~~~~~s~c~~~gl~VkPkkG~ALlF~nl~ 222 (310)
T PLN00052 143 QKYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGETVFPNAEGWENQPKDDTFSECAHKGLAVKPVKGDAVLFFSLH 222 (310)
T ss_pred CCCCCCCCccccccccccCCceeEEEEEEeccCCCCCceecCCcccccccccccchhhhhcCCeEeccCcceEEEEeccC
Confidence 999999999875332234689999999999999999999999864211 1122345566 4899999999999999999
Q ss_pred CCCCCCCCCcccccCcccceEEEEEecccccccc
Q 022995 255 PNGTIDPTSIHGSCPVVKGEKWVATKWIRDQEQY 288 (289)
Q Consensus 255 ~~g~~D~~~~H~g~PV~~G~K~v~~~W~~~~~~~ 288 (289)
+||++|+.++|+||||++|+||++|+|||.+.++
T Consensus 223 ~dG~~D~~SlHagcPVi~G~Kw~atkWi~~~~~~ 256 (310)
T PLN00052 223 IDGVPDPLSLHGSCPVIEGEKWSAPKWIHIRSYE 256 (310)
T ss_pred CCCCCCcccccCCCeeecCeEEEEEEeeeccccc
Confidence 9999999999999999999999999999998764
No 2
>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=5.4e-51 Score=374.03 Aligned_cols=202 Identities=42% Similarity=0.799 Sum_probs=180.9
Q ss_pred Cccccccc--EEeecCCcEEEecCCCCHHHHHHHHHHhhcCCccceeeecCCceeecccceeecceEEecCCCChhHHHH
Q 022995 72 DSVTNIPF--QVLSWMPRALYFPNFATPEQCKSIINMAKLNLRPSTLALRKGETVDNTQGIRTSSGVFISAAEDESGTLD 149 (289)
Q Consensus 72 ~~~~~~p~--~~ls~~P~i~~i~nfLs~eEC~~Li~~a~~~l~~s~v~~~~G~~~~~~~~~RtS~~~~l~~~~~~~~i~~ 149 (289)
+++..+|+ |++||+|+|++||||+|++||++|+++++++++++++....++.......+|+|+++|+.... +++++
T Consensus 81 ~~~~~ap~k~E~lsw~P~~~~yhd~ls~~e~d~l~~lak~~l~~stv~~~~~~~~~~~~~~R~S~~t~l~~~~--~~~~~ 158 (289)
T KOG1591|consen 81 PFLRLAPVKLEELSWDPRVVLYHDFLSDEECDHLISLAKPKLERSTVVADKGTGHSTTSAVRTSSGTFLPDGA--SPVVS 158 (289)
T ss_pred cceeecchhhhhcccCCceEeehhcCCHHHHHHHHHhhhhhhhceeeeccCCcccccceeeEecceeEecCCC--CHHHH
Confidence 67777775 699999999999999999999999999999999999976555444455668999999998843 47999
Q ss_pred HHHHHHHHHcCCCCcccccceeeecCCCCccccCcccCCC--CC--CCCCCCceEEEEEEecCCCCCCcceeccCCCCCC
Q 022995 150 LIEEKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAFDP--QE--YGPQKSQRVASFLVYLTDLEEGGETMFPFENGMN 225 (289)
Q Consensus 150 ~I~~Ri~~~~g~p~~~~E~lqv~rY~~G~~y~~H~D~~~~--~~--~~~~~~~R~~T~liYLNdv~eGGeT~Fp~~~~~~ 225 (289)
+|++||++++++|.++.|.|||++|++||||.+|+|++.+ .. .....++|++|+++||+|+++||+|+||...
T Consensus 159 ~i~~ri~~~T~l~~e~~E~lqVlnYg~Gg~Y~~H~D~~~~~~~~~~~~~~~g~RiaT~l~yls~v~~GG~TvFP~~~--- 235 (289)
T KOG1591|consen 159 RIEQRIADLTGLPVENGESLQVLNYGLGGHYEPHYDYFLPEEDETFNGLNGGNRIATVLMYLSDVEQGGETVFPNLG--- 235 (289)
T ss_pred HHHHHHHhccCCCcccCccceEEEecCCccccccccccccccchhhhhcccCCcceeEEEEecccCCCCcccCCCCC---
Confidence 9999999999999999999999999999999999999963 21 2345799999999999999999999999842
Q ss_pred CCCCCCcccccceEEecccccEEEEeecCCCCCCCCCCcccccCcccceEEEEEecccccccc
Q 022995 226 ADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQEQY 288 (289)
Q Consensus 226 ~~~~~~~~~~~~~~V~P~~G~allF~n~~~~g~~D~~~~H~g~PV~~G~K~v~~~W~~~~~~~ 288 (289)
..++|+|++|+|++|+|+++||..|+++.|++|||+.|+||++|+|||.++|+
T Consensus 236 ----------~~~~V~PkkGdal~wfnl~~~~~~d~~S~H~~CPv~~G~kw~~~~wi~~~~~~ 288 (289)
T KOG1591|consen 236 ----------MKPAVKPKKGDALFWFNLHPDGEGDPRSLHGGCPVLVGSKWIATKWIHEKNQE 288 (289)
T ss_pred ----------CcccccCCCCCeeEEEEccCCCCCCccccccCCCeeeccceeeeeeeeecccc
Confidence 12499999999999999999999999999999999999999999999999986
No 3
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=100.00 E-value=2.3e-36 Score=259.92 Aligned_cols=175 Identities=31% Similarity=0.601 Sum_probs=149.6
Q ss_pred CcEEEecCCCCHHHHHHHHHHhhcCCccceeeecCCceeecccceeecceEEecCCCChhHHHHHHHHHHHHHcCCC---
Q 022995 86 PRALYFPNFATPEQCKSIINMAKLNLRPSTLALRKGETVDNTQGIRTSSGVFISAAEDESGTLDLIEEKIAKVTMLP--- 162 (289)
Q Consensus 86 P~i~~i~nfLs~eEC~~Li~~a~~~l~~s~v~~~~G~~~~~~~~~RtS~~~~l~~~~~~~~i~~~I~~Ri~~~~g~p--- 162 (289)
|.|++++||||++||++||+++++...++.+....+.. ...+.+|+|..+|+...+ .++++++|.+||+.+++.+
T Consensus 1 P~i~~~~~~ls~~ec~~li~~~~~~~~~~~~~~~~~~~-~~~~~~R~~~~~~l~~~~-~~~~~~~l~~~i~~~~~~~~~~ 78 (178)
T smart00702 1 PGVVVFHDFLSPAECQKLLEEAEPLGWRGEVTRGDTNP-NHDSKYRQSNGTWLELLK-GDLVIERIRQRLADFLGLLRGL 78 (178)
T ss_pred CcEEEECCCCCHHHHHHHHHHhhhhcccceeecCCCCc-cccCCCEeecceecCCCC-CCHHHHHHHHHHHHHHCCCchh
Confidence 78999999999999999999999987788877543321 134679999999998754 1368999999999999998
Q ss_pred CcccccceeeecCCCCccccCcccCCCCCCCCCCCceEEEEEEecCCCCCCcceeccCCCCCCCCCCCCcccccceEEec
Q 022995 163 RINGEAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKP 242 (289)
Q Consensus 163 ~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv~eGGeT~Fp~~~~~~~~~~~~~~~~~~~~V~P 242 (289)
....|.+|++||.+|++|.+|+|...... .++|.+|+++||||+++||+|.||.... .....|+|
T Consensus 79 ~~~~~~~~~~~Y~~g~~~~~H~D~~~~~~----~~~r~~T~~~yLn~~~~GG~~~f~~~~~-----------~~~~~v~P 143 (178)
T smart00702 79 PLSAEDAQVARYGPGGHYGPHVDNFEDDE----NGDRIATFLLYLNDVEEGGELVFPGLGL-----------MVCATVKP 143 (178)
T ss_pred hccCcceEEEEECCCCcccCcCCCCCCCC----CCCeEEEEEEEeccCCcCceEEecCCCC-----------ccceEEeC
Confidence 67899999999999999999999986532 2689999999999999999999997431 13569999
Q ss_pred ccccEEEEeecCCCCCCCCCCcccccCcccceEEEEEeccc
Q 022995 243 RQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVATKWIR 283 (289)
Q Consensus 243 ~~G~allF~n~~~~g~~D~~~~H~g~PV~~G~K~v~~~W~~ 283 (289)
++|++|+|++.. +.++|++|||++|+||++++|+|
T Consensus 144 ~~G~~v~f~~~~------~~~~H~v~pv~~G~r~~~~~W~~ 178 (178)
T smart00702 144 KKGDLLFFPSGR------GRSLHGVCPVTRGSRWAITGWIR 178 (178)
T ss_pred CCCcEEEEeCCC------CCccccCCcceeCCEEEEEEEEC
Confidence 999999999742 37999999999999999999986
No 4
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=99.95 E-value=6.2e-28 Score=214.93 Aligned_cols=167 Identities=23% Similarity=0.299 Sum_probs=126.1
Q ss_pred EEEecCCCCHHHHHHHHHHhhc-CCccceeeecCCceeecccceeecceEEecCCCChhHHHHHHHHHHHHHc-------
Q 022995 88 ALYFPNFATPEQCKSIINMAKL-NLRPSTLALRKGETVDNTQGIRTSSGVFISAAEDESGTLDLIEEKIAKVT------- 159 (289)
Q Consensus 88 i~~i~nfLs~eEC~~Li~~a~~-~l~~s~v~~~~G~~~~~~~~~RtS~~~~l~~~~~~~~i~~~I~~Ri~~~~------- 159 (289)
|++++||||++||+++|+..+. .+.+..+.. |. ..+.+|++...-.+ +++.+.|.++|.+.+
T Consensus 2 i~~I~~vLs~eec~~~~~~le~~~~~dg~~ta--G~---~~~~vKnN~ql~~d-----~~~a~~l~~~i~~~L~~~~l~~ 71 (226)
T PRK05467 2 LLHIPDVLSPEEVAQIRELLDAAEWVDGRVTA--GA---QAAQVKNNQQLPED-----SPLARELGNLILDALTRNPLFF 71 (226)
T ss_pred eeeecccCCHHHHHHHHHHHHhcCCccCCcCc--Cc---cchhcccccccCCC-----CHHHHHHHHHHHHHHhcCchhh
Confidence 6899999999999999999876 566555442 22 23567877655321 146666666666543
Q ss_pred --CCCCcccccceeeecCCCCccccCcccCCCCCCCC-CCCceEEEEEEecCCCC--CCcceeccCCCCCCCCCCCCccc
Q 022995 160 --MLPRINGEAFNILRYKIGQKYNSHYDAFDPQEYGP-QKSQRVASFLVYLTDLE--EGGETMFPFENGMNADGSYDYQK 234 (289)
Q Consensus 160 --g~p~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~-~~~~R~~T~liYLNdv~--eGGeT~Fp~~~~~~~~~~~~~~~ 234 (289)
.+|. ...++++.||.+|++|++|+|++.....+. ...+|.+|+++||||++ +||||+|+...
T Consensus 72 sa~lp~-~i~~~~f~rY~~G~~y~~H~D~~~~~~~~~~~~~rs~lS~~lyLnd~~~yeGGEl~~~~~~------------ 138 (226)
T PRK05467 72 SAALPR-KIHPPLFNRYEGGMSYGFHVDNAVRSLPGTGGRVRTDLSATLFLSDPDDYDGGELVIEDTY------------ 138 (226)
T ss_pred hhcccc-ccccceEEEECCCCccCccccCCcccCCCCCcceeEEEEEEEEeCCCCCCcCCceEEecCC------------
Confidence 2333 235789999999999999999986532111 12356899999999874 89999998642
Q ss_pred ccceEEecccccEEEEeecCCCCCCCCCCcccccCcccceEEEEEeccccccc
Q 022995 235 CIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQEQ 287 (289)
Q Consensus 235 ~~~~~V~P~~G~allF~n~~~~g~~D~~~~H~g~PV~~G~K~v~~~W~~~~~~ 287 (289)
....|+|++|++|+|++ .++|+|+||++|+||+++.|+++-..
T Consensus 139 -g~~~Vkp~aG~~vlfps---------~~lH~v~pVt~G~R~~~~~Wi~S~v~ 181 (226)
T PRK05467 139 -GEHRVKLPAGDLVLYPS---------TSLHRVTPVTRGVRVASFFWIQSLVR 181 (226)
T ss_pred -CcEEEecCCCeEEEECC---------CCceeeeeccCccEEEEEecHHHHcC
Confidence 35789999999999997 79999999999999999999987543
No 5
>PHA02813 hypothetical protein; Provisional
Probab=99.72 E-value=5.8e-17 Score=150.50 Aligned_cols=147 Identities=20% Similarity=0.260 Sum_probs=107.5
Q ss_pred HHHHHHHhhcCCccceeeec-CCceeecccceeecceEEecCCCChhHHHHHHHHHHHHHc-CCC----Ccccccceeee
Q 022995 100 CKSIINMAKLNLRPSTLALR-KGETVDNTQGIRTSSGVFISAAEDESGTLDLIEEKIAKVT-MLP----RINGEAFNILR 173 (289)
Q Consensus 100 C~~Li~~a~~~l~~s~v~~~-~G~~~~~~~~~RtS~~~~l~~~~~~~~i~~~I~~Ri~~~~-g~p----~~~~E~lqv~r 173 (289)
...+|+...-.+.+|.+... +|. ....+.+|+++++.++.. +.+.++|++.+-+-+ +.+ ...+|.++++|
T Consensus 25 l~~~i~~~d~~~~~s~i~~~~~~g-e~l~~~iRnNkrviid~~---~~L~erIr~~Lp~~l~~~~lv~~V~vnerirfyr 100 (354)
T PHA02813 25 IMDMIKYKDIIWEESKVFDHEKGG-EVINTNERQCKQYIIRGL---DDIFKVIRKKLLLSFEFPQKISDIILDNTITLIK 100 (354)
T ss_pred HHHHHhccccCccccceeccccCc-eEEccccccceEEEEcCH---HHHHHHHHHhhHHHhcCCccceeEEEcceEEEEE
Confidence 33334333335778888763 332 356788999999999742 235555544444333 333 46789999999
Q ss_pred cCCCCccccCcccCCCCCCCCCCCceEEEEEEecCCCCCCcceeccCCCCCCCCCCCCcccccceEEecccccEEEEeec
Q 022995 174 YKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSL 253 (289)
Q Consensus 174 Y~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv~eGGeT~Fp~~~~~~~~~~~~~~~~~~~~V~P~~G~allF~n~ 253 (289)
|.+||+|.+|.|+..... ...+.+|+|+|||++++||||.|.... .. +|. .|++|+|.
T Consensus 101 Y~kGq~F~~H~Dg~~~r~----k~~s~~tLLLYLN~~~~GGeT~f~~~~-------------~t-sI~--~g~dlLFd-- 158 (354)
T PHA02813 101 YEKGDFFNNHRDFIHFKS----KNCYCYHLVLYLNNTSKGGNTNIHIKD-------------NT-IFS--TKNDVLFD-- 158 (354)
T ss_pred ECCCcccCcccCCceeec----CCceEEEEEEEEeccCCCCceEEEcCC-------------Cc-eEe--ecceEEEe--
Confidence 999999999999865431 234899999999999999999998631 12 465 99999996
Q ss_pred CCCCCCCCCCcccccCcccceEEEEE
Q 022995 254 LPNGTIDPTSIHGSCPVVKGEKWVAT 279 (289)
Q Consensus 254 ~~~g~~D~~~~H~g~PV~~G~K~v~~ 279 (289)
....|+|++|.+|.|||+-
T Consensus 159 -------h~l~Heg~~V~sG~KyVa~ 177 (354)
T PHA02813 159 -------KTLNHSSDIITDGEKNIAL 177 (354)
T ss_pred -------cccccCCcEeccCeEEEEE
Confidence 4899999999999999874
No 6
>PHA02869 C4L/C10L-like gene family protein; Provisional
Probab=99.70 E-value=8.9e-17 Score=151.14 Aligned_cols=135 Identities=23% Similarity=0.231 Sum_probs=104.0
Q ss_pred Cccceeeec-CCceeecccceeecceEEecCCCChhHHHHHHHHHHHHHc-----CC--CCcccccceeeecCCCCcccc
Q 022995 111 LRPSTLALR-KGETVDNTQGIRTSSGVFISAAEDESGTLDLIEEKIAKVT-----ML--PRINGEAFNILRYKIGQKYNS 182 (289)
Q Consensus 111 l~~s~v~~~-~G~~~~~~~~~RtS~~~~l~~~~~~~~i~~~I~~Ri~~~~-----g~--p~~~~E~lqv~rY~~G~~y~~ 182 (289)
+.+|.+.+. +|. ......-|+|.+..+... +.+.|.+||+.+. ++ ..+.+|+++++||.+||+|++
T Consensus 45 ~~~s~i~~~~~g~-e~~~~~~~ksKqii~e~~-----La~~L~erlr~lLp~~lk~~v~~V~lnerirfyrY~kGq~F~~ 118 (418)
T PHA02869 45 CEDSKIFFPEKRT-ELLSIKDRKSKQIVFENS-----LNDDLLKKLHALIYDELSTVVDSVTVENTVTLIMYEKGDYFAR 118 (418)
T ss_pred cccceeeccccCc-eeEeeccccceeEEechH-----HHHHHHHHHHHhhhHHhhCccceEEEcceEEEEEECCCCcccc
Confidence 567777763 332 223455699998888642 5566666666542 43 356889999999999999999
Q ss_pred CcccCCCCCCCCCCCceEEEEEEecCCCCCCcceeccCCCCCCCCCCCCcccccceEEecccccEEEEeecCCCCCCCCC
Q 022995 183 HYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPT 262 (289)
Q Consensus 183 H~D~~~~~~~~~~~~~R~~T~liYLNdv~eGGeT~Fp~~~~~~~~~~~~~~~~~~~~V~P~~G~allF~n~~~~g~~D~~ 262 (289)
|.|+..... .....+|+|+|||++++||||.|... ...+|+|++| |+|. ..
T Consensus 119 H~Dg~~~rs----~e~s~~tLLLYLNd~~~GGET~f~~~--------------~~~sI~pksg--LLFd---------h~ 169 (418)
T PHA02869 119 HRDFSTVFS----KNIICVHLLLYLEQPETGGETVIYID--------------NNTSVKLKTD--HLFD---------KT 169 (418)
T ss_pred cccCceecC----CCEEEEEEEEEEeccCCCCceEEEeC--------------CCceEecCCC--eEec---------cc
Confidence 999876432 45678999999999999999999862 3567999999 9995 48
Q ss_pred CcccccCcccceEEEEEe
Q 022995 263 SIHGSCPVVKGEKWVATK 280 (289)
Q Consensus 263 ~~H~g~PV~~G~K~v~~~ 280 (289)
..|+|++|.+|.|||++.
T Consensus 170 l~Heg~~V~sG~KyVart 187 (418)
T PHA02869 170 IEHESITVESGRKCVALF 187 (418)
T ss_pred cccCCcEeecCeEEEEEE
Confidence 999999999999999864
No 7
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=99.64 E-value=3.7e-16 Score=121.71 Aligned_cols=96 Identities=30% Similarity=0.513 Sum_probs=70.1
Q ss_pred ceeeecCCCCccccCcccCCCCCCCCCCCceEEEEEEecCCCC---CCcceeccCCCCCCCCCCCCcccccceEEecccc
Q 022995 169 FNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLE---EGGETMFPFENGMNADGSYDYQKCIGLKVKPRQG 245 (289)
Q Consensus 169 lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv~---eGGeT~Fp~~~~~~~~~~~~~~~~~~~~V~P~~G 245 (289)
+|+.+|.+|++|++|+|... ...+.+|+++|||+++ +||+|+|.... ...+. ........++|+.|
T Consensus 1 ~~~~~y~~G~~~~~H~D~~~-------~~~~~~t~llyL~~~~~~~~GG~l~~~~~~-~~~~~---~~~~~~~~~~p~~g 69 (100)
T PF13640_consen 1 MQLNRYPPGGFFGPHTDNSY-------DPHRRVTLLLYLNDPEWEFEGGELEFYPSK-DSDDV---SREVEDFDIVPKPG 69 (100)
T ss_dssp -EEEEEETTEEEEEEESSSC-------CCSEEEEEEEESS-CS-HCEE--EEETTTS--TSST---CEEEGGGSEE-BTT
T ss_pred CEEEEECcCCEEeeeECCCC-------CCcceEEEEEEECCCCcccCCCEEEEeccc-cCCCc---ceEEEeccccCCCC
Confidence 47999999999999999854 3579999999999876 99999998642 10000 00001122339999
Q ss_pred cEEEEeecCCCCCCCCCCcccccCc-ccceEEEEEeccc
Q 022995 246 DGLLFYSLLPNGTIDPTSIHGSCPV-VKGEKWVATKWIR 283 (289)
Q Consensus 246 ~allF~n~~~~g~~D~~~~H~g~PV-~~G~K~v~~~W~~ 283 (289)
++|+|.+ ..++|++.|| ..|.|++++.|++
T Consensus 70 ~~v~F~~--------~~~~H~v~~v~~~~~R~~l~~~~~ 100 (100)
T PF13640_consen 70 RLVIFPS--------DNSLHGVTPVGEGGRRYSLTFWFH 100 (100)
T ss_dssp EEEEEES--------CTCEEEEEEE-EESEEEEEEEEEE
T ss_pred EEEEEeC--------CCCeecCcccCCCCCEEEEEEEEC
Confidence 9999986 4899999999 8999999999985
No 8
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=99.49 E-value=1.5e-13 Score=117.28 Aligned_cols=167 Identities=23% Similarity=0.285 Sum_probs=111.8
Q ss_pred CcEEEecCCCCHHHHHHHHHHhhc-CCccceeeecCCceeecccceeecceEEecCCCChhHHHHHHHHHHHH-------
Q 022995 86 PRALYFPNFATPEQCKSIINMAKL-NLRPSTLALRKGETVDNTQGIRTSSGVFISAAEDESGTLDLIEEKIAK------- 157 (289)
Q Consensus 86 P~i~~i~nfLs~eEC~~Li~~a~~-~l~~s~v~~~~G~~~~~~~~~RtS~~~~l~~~~~~~~i~~~I~~Ri~~------- 157 (289)
|..+.|+.+||+++|.+|.+..+. .+....... | .....+|.+... +.++ .+...+..-|.+
T Consensus 2 ~m~lhIp~VLs~a~va~iRa~l~~A~w~dGrat~--g---~q~a~vk~n~ql--p~~s---~l~~~vg~~il~al~~~pl 71 (229)
T COG3128 2 IMMLHIPEVLSEAQVARIRAALEQAEWVDGRATQ--G---PQGAQVKNNLQL--PQDS---ALARELGNEILQALTAHPL 71 (229)
T ss_pred ceEEechhhCCHHHHHHHHHHHhhcccccccccc--C---cchhhhhccccC--Cccc---HHHHHHHHHHHHHHHhchh
Confidence 446789999999999999988754 222221111 1 011233433322 2211 233333322222
Q ss_pred HcC--CCCcccccceeeecCCCCccccCcccCCCCCCCCCCCce---EEEEEEecCCCC--CCcceeccCCCCCCCCCCC
Q 022995 158 VTM--LPRINGEAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQR---VASFLVYLTDLE--EGGETMFPFENGMNADGSY 230 (289)
Q Consensus 158 ~~g--~p~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R---~~T~liYLNdv~--eGGeT~Fp~~~~~~~~~~~ 230 (289)
+++ +|. ..++.++.||..|+.|..|.|+..+.- .+..++| .+++-++|+|++ +|||.+.-...
T Consensus 72 ff~aALp~-t~~~P~Fn~Y~eg~~f~fHvDgavr~~-hp~~~~~lrtdls~tlfl~DPedYdGGeLVv~dtY-------- 141 (229)
T COG3128 72 FFAAALPR-TCLPPLFNRYQEGDFFGFHVDGAVRSI-HPGSGFRLRTDLSCTLFLSDPEDYDGGELVVNDTY-------- 141 (229)
T ss_pred HHHhhccc-ccCCchhhhccCCCcccccccCccccc-CCCCCceeEeeeeeeeecCCccccCCceEEEeccc--------
Confidence 122 333 557789999999999999999986541 1223334 466778999975 79999986543
Q ss_pred CcccccceEEecccccEEEEeecCCCCCCCCCCcccccCcccceEEEEEecccccc
Q 022995 231 DYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQE 286 (289)
Q Consensus 231 ~~~~~~~~~V~P~~G~allF~n~~~~g~~D~~~~H~g~PV~~G~K~v~~~W~~~~~ 286 (289)
....||-.+|++|+|++ .++|++.||+.|+++..-.|+++-.
T Consensus 142 -----g~h~VklPAGdLVlypS---------tSlH~VtPVTRg~R~asffW~qsli 183 (229)
T COG3128 142 -----GNHRVKLPAGDLVLYPS---------TSLHEVTPVTRGERFASFFWIQSLI 183 (229)
T ss_pred -----cceEEeccCCCEEEccc---------ccceeccccccCceEEEeeehHHHh
Confidence 36788888899999998 8999999999999999999997643
No 9
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms]
Probab=98.77 E-value=7e-08 Score=85.25 Aligned_cols=171 Identities=21% Similarity=0.285 Sum_probs=113.8
Q ss_pred CCcEEEecCCCCHHHHHHHHHHhhc-----CCccceeeecCCceeecccceeecceEEecCCCChhHHH----HHHHHHH
Q 022995 85 MPRALYFPNFATPEQCKSIINMAKL-----NLRPSTLALRKGETVDNTQGIRTSSGVFISAAEDESGTL----DLIEEKI 155 (289)
Q Consensus 85 ~P~i~~i~nfLs~eEC~~Li~~a~~-----~l~~s~v~~~~G~~~~~~~~~RtS~~~~l~~~~~~~~i~----~~I~~Ri 155 (289)
+=.+.+++|||-.+--+.+.+..+. .+.+..++.. .. ...+++|....+|+...+..-..+ ..|..-|
T Consensus 52 e~g~~vvd~flg~~~g~~v~~ev~~l~~~G~f~dgql~~~--~~-~~~k~iRgd~i~wi~G~e~gc~~i~~L~s~~d~~i 128 (280)
T KOG3710|consen 52 EYGICVVDNFLGSETGKFILKEVEALYETGAFRDGQLVSP--DA-FHSKDIRGDKITWVGGNEPGCETIMLLPSPIDSVI 128 (280)
T ss_pred hcceEEEechhhHHHHHHHHHHHHHHHhccCccCceeccC--cC-CcchhhccCCceEecCCCCCccceeeecccchhhh
Confidence 3468899999998877766655543 4566555532 11 234688999999998765311111 1111112
Q ss_pred HHHc---CCCCcccccceeeecC-CCCccccCcccCCCCCCCCCCCceEEEEEEecCC---CC-CCcce-eccCCCCCCC
Q 022995 156 AKVT---MLPRINGEAFNILRYK-IGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTD---LE-EGGET-MFPFENGMNA 226 (289)
Q Consensus 156 ~~~~---g~p~~~~E~lqv~rY~-~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNd---v~-eGGeT-~Fp~~~~~~~ 226 (289)
.... +-....-.+-.|..|. .|-.|-.|+|.- .+..|-.|++.|||. +. .||.+ .||....
T Consensus 129 ~h~~~r~~~~~~gRtkAMVAcYPGNGtgYVrHVDNP-------~gDGRcITcIYYlNqNWD~kv~Gg~Lri~pe~~~--- 198 (280)
T KOG3710|consen 129 LHCNGRLGSYIIGRTKAMVACYPGNGTGYVRHVDNP-------HGDGRCITCIYYLNQNWDVKVHGGILRIFPEGST--- 198 (280)
T ss_pred hhhccccccccccceeEEEEEecCCCceeeEeccCC-------CCCceEEEEEEEcccCcceeeccceeEeccCCCC---
Confidence 1111 1111122345688896 577899999973 467899999999995 32 45544 5775432
Q ss_pred CCCCCcccccceEEecccccEEEEeecCCCCCCCCCCcccccCcccceEEEEEeccccc
Q 022995 227 DGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQ 285 (289)
Q Consensus 227 ~~~~~~~~~~~~~V~P~~G~allF~n~~~~g~~D~~~~H~g~PV~~G~K~v~~~W~~~~ 285 (289)
.-..|.|+-+..|||+| |.+-.|++.|+.. +||.+|.|+.+.
T Consensus 199 ---------~~adieP~fdrLlffwS-------drrnPhev~Pa~~-tryaitvwyfda 240 (280)
T KOG3710|consen 199 ---------TFADIEPKFDRLLFFWS-------DRRNPHEVQPAYA-TRYAITVWYFDA 240 (280)
T ss_pred ---------cccccCcCCCeEEEEEe-------cCCCccccccccc-cceEEEEEEecc
Confidence 24569999999999999 7788999999996 699999998765
No 10
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae.
Probab=98.61 E-value=2.6e-07 Score=86.25 Aligned_cols=124 Identities=21% Similarity=0.305 Sum_probs=91.2
Q ss_pred cceeecceEEecCCCChhHHHHHHHHHHHHHcCC---CCcccccceeeecCCCCccccCcccCCCCCCCCCCCceEEEEE
Q 022995 128 QGIRTSSGVFISAAEDESGTLDLIEEKIAKVTML---PRINGEAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFL 204 (289)
Q Consensus 128 ~~~RtS~~~~l~~~~~~~~i~~~I~~Ri~~~~g~---p~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~l 204 (289)
...|.|++..++. ++..++.++|++.|..-+.- .....+.+.+++|++|++|+.|.|..... .....-.+++
T Consensus 38 ~~~r~sk~iv~~~-~~~~dI~~~ik~~l~~~lk~~v~~V~V~n~iTfikY~kGd~f~~~~d~~~~~----~~n~~~y~Lv 112 (339)
T PF03336_consen 38 HEFRKSKQIVIED-SLNDDIFSKIKNLLYDELKNVVEDVIVDNTITFIKYEKGDFFDNHRDFIKRD----SKNCLEYHLV 112 (339)
T ss_pred ccccccceEEEec-cchHHHHHHHHHHHHHHhhcceeEEEEcceEEEEEEccCcchhhhcccceec----cCCceEEEEE
Confidence 3378888876664 34457888888887664432 12456789999999999999999943321 2456789999
Q ss_pred EecCCCCCCcceeccCCCCCCCCCCCCcccccceEEecccccEEEEeecCCCCCCCCCCcccccCcccceEEEEE
Q 022995 205 VYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVAT 279 (289)
Q Consensus 205 iYLNdv~eGGeT~Fp~~~~~~~~~~~~~~~~~~~~V~P~~G~allF~n~~~~g~~D~~~~H~g~PV~~G~K~v~~ 279 (289)
+||+.+++||+|.+.-..+ ..-.+++ ++-++| |....|.+.+|.+|+|+||.
T Consensus 113 LyL~~~~~GGktkiyi~~~------------~~tvI~~--~~DvLF---------dKsl~h~s~~V~~G~K~VAl 164 (339)
T PF03336_consen 113 LYLNNPENGGKTKIYIDPN------------DNTVIST--SEDVLF---------DKSLNHESIIVEEGRKIVAL 164 (339)
T ss_pred EEEeccCCCceEEEEECCC------------Cceeeec--cccEEE---------eccccccceEeccCeEEEEE
Confidence 9999999999999763221 1222444 666888 46899999999999999963
No 11
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily
Probab=98.54 E-value=1.4e-07 Score=69.31 Aligned_cols=53 Identities=28% Similarity=0.451 Sum_probs=43.6
Q ss_pred ccccceeeecCCCCccccCcccCCCCCCCCCCCceEEEEEEecC----CCCCCcceeccCC
Q 022995 165 NGEAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLT----DLEEGGETMFPFE 221 (289)
Q Consensus 165 ~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLN----dv~eGGeT~Fp~~ 221 (289)
..+.++..+|..|++|++|+|...... +.+|.+|++|||| +..+||++.|...
T Consensus 9 ~~~~~~~~~~~~g~~~~~H~D~~~~~~----~~~r~~t~llYLn~~w~~d~~Gg~~~f~~~ 65 (70)
T PF13661_consen 9 FRPNFRFYRYRRGDFFGWHVDADPSSS----GKRRFLTLLLYLNEDWDEDFGGGELFFDDD 65 (70)
T ss_pred cCcceeEEEcCCCCEeeeeEcCCcccc----ccceeEEEEEEecccccCccCCcEEEEeCC
Confidence 356789999999999999999976432 4789999999999 4567888888764
No 12
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=98.44 E-value=2e-07 Score=72.04 Aligned_cols=90 Identities=21% Similarity=0.323 Sum_probs=56.3
Q ss_pred ccceeeecC---CCCccccCcccCCCCCCCCCCCceEEEEEEecCCCCCCcceeccCCCCCCCCCCCCcccccceEEecc
Q 022995 167 EAFNILRYK---IGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPR 243 (289)
Q Consensus 167 E~lqv~rY~---~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv~eGGeT~Fp~~~~~~~~~~~~~~~~~~~~V~P~ 243 (289)
+.+++++|. .+..+.+|+|.. .+++|++++ .++|++.|.... ..+.|+|.
T Consensus 2 ~~~~~~~Y~~~~~~~~~~~H~D~~----------~~~~Til~~----~~~~gL~~~~~~-------------~~~~v~~~ 54 (98)
T PF03171_consen 2 SQLRLNRYPPPENGVGIGPHTDDE----------DGLLTILFQ----DEVGGLQVRDDG-------------EWVDVPPP 54 (98)
T ss_dssp -EEEEEEE-SCCGCEEEEEEEES------------SSEEEEEE----TSTS-EEEEETT-------------EEEE----
T ss_pred CEEEEEECCCcccCCceeCCCcCC----------CCeEEEEec----ccchheeccccc-------------cccCccCc
Confidence 468999999 889999999974 468999999 778889998632 34667776
Q ss_pred cccEEEEe-ecC--CCCCCCCCCcccccCcccceEEEEEeccc
Q 022995 244 QGDGLLFY-SLL--PNGTIDPTSIHGSCPVVKGEKWVATKWIR 283 (289)
Q Consensus 244 ~G~allF~-n~~--~~g~~D~~~~H~g~PV~~G~K~v~~~W~~ 283 (289)
.+..++.. ++. -.+......+|+++++.+|.|++++.|++
T Consensus 55 ~~~~~v~~G~~l~~~t~g~~~~~~HrV~~~~~~~R~s~~~f~~ 97 (98)
T PF03171_consen 55 PGGFIVNFGDALEILTNGRYPATLHRVVPPTEGERYSLTFFLR 97 (98)
T ss_dssp TTCEEEEEBHHHHHHTTTSS----EEEE--STS-EEEEEEEEE
T ss_pred cceeeeeceeeeecccCCccCCceeeeEcCCCCCEEEEEEEEC
Confidence 66555544 311 12335578999999999999999999985
No 13
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=5e-05 Score=68.89 Aligned_cols=101 Identities=25% Similarity=0.253 Sum_probs=77.1
Q ss_pred cceeeecCCCCccccCcccCCCCCCCCCCCceEEEEEEecCCC---CCCcce-eccCCCCCCCCCCCCcccccceEEecc
Q 022995 168 AFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDL---EEGGET-MFPFENGMNADGSYDYQKCIGLKVKPR 243 (289)
Q Consensus 168 ~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv---~eGGeT-~Fp~~~~~~~~~~~~~~~~~~~~V~P~ 243 (289)
+.|+.-|.+|.+|..|-|.+.. ...|.+|.++|+|.. +-|||. .|+.....+. .. ..-..+.|.
T Consensus 137 e~~~~~y~~G~~l~~H~D~~~~------~~~R~~~yv~y~~r~wkpe~GGeL~l~~s~~~~~~-----~~-~~~~ti~P~ 204 (252)
T COG3751 137 EGQITVYNPGCFLLKHDDNGRD------KDIRLATYVYYLTREWKPEYGGELRLFHSLQKNNT-----AA-DSFKTIAPV 204 (252)
T ss_pred eeeeeEecCCceeEeecccCCC------ccceEEEEEeccCCCCCcCCCCceeeccccccccc-----cc-ccccccCCC
Confidence 5899999999999999998753 467999999999984 689999 7876532110 00 124679999
Q ss_pred cccEEEEeecCCCCCCCCCCcccccCcc-cceEEEEEecccccc
Q 022995 244 QGDGLLFYSLLPNGTIDPTSIHGSCPVV-KGEKWVATKWIRDQE 286 (289)
Q Consensus 244 ~G~allF~n~~~~g~~D~~~~H~g~PV~-~G~K~v~~~W~~~~~ 286 (289)
-+.+++|.+- -.++.|.+.+|. .+.+..++.|+|...
T Consensus 205 fn~lv~F~s~------~~Hs~h~V~~~~~~~~RlsV~GW~r~~~ 242 (252)
T COG3751 205 FNSLVFFKSR------PSHSVHSVEEPYAAADRLSVTGWFRRPG 242 (252)
T ss_pred CceEEEEEec------CCccceeccccccccceEEEeeEEecCC
Confidence 9999999872 124788888854 358999999998764
No 14
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=97.87 E-value=0.0003 Score=64.85 Aligned_cols=180 Identities=14% Similarity=0.127 Sum_probs=92.3
Q ss_pred CcEEEecCCCCHHHHHHHHHHhhcCCccceeeecCCcee--ecccceeecceEEecCCCChhHHH------HHHHHHHHH
Q 022995 86 PRALYFPNFATPEQCKSIINMAKLNLRPSTLALRKGETV--DNTQGIRTSSGVFISAAEDESGTL------DLIEEKIAK 157 (289)
Q Consensus 86 P~i~~i~nfLs~eEC~~Li~~a~~~l~~s~v~~~~G~~~--~~~~~~RtS~~~~l~~~~~~~~i~------~~I~~Ri~~ 157 (289)
-.-+++++||+++||+.|.+..+..+....+.. .+... ......|. .+.....+ +.+ .+|-+.+++
T Consensus 28 dGyvvl~~vls~eev~~lr~~i~~~~~~~~~~~-~~~~~~~~~~~~~r~---~~~~~~~~--~~~~~l~~~p~l~~~~~~ 101 (277)
T TIGR02408 28 DGFLLLENLFSDDEVAALLAEVERMTRDPAIVR-DEEAITEPGSNAVRS---IFEVHVLS--PILARLVRDPRVANAARQ 101 (277)
T ss_pred CCEEECcccCCHHHHHHHHHHHHHHHhcccccC-CCcceecCCCCceEE---EecccccC--HHHHHHHcChHHHHHHHH
Confidence 445778999999999999998876432211100 00000 00112221 11111111 222 233444556
Q ss_pred HcCCCCcccccceeeecC-CCCccccCcccCCCCCCCCCCCceEEEEEEecCCCCC-Ccceec-cCCCCCCC-----CC-
Q 022995 158 VTMLPRINGEAFNILRYK-IGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEE-GGETMF-PFENGMNA-----DG- 228 (289)
Q Consensus 158 ~~g~p~~~~E~lqv~rY~-~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv~e-GGeT~F-p~~~~~~~-----~~- 228 (289)
++|-+.......-+.+.. .|+.+.||.|.............+.+|+.|+|.|+.+ -|.+.| |..-.... ..
T Consensus 102 LlG~~~~l~~~~l~~kp~~~g~~~~WHQD~~~w~~~~~~p~~~~vt~wiaLdD~t~eNG~l~vIPGSH~~~~~~~~~~~~ 181 (277)
T TIGR02408 102 ILGSDVYVHQSRINMKPGFKGTGFYWHSDFETWHAEDGMPSMRAVSCSIALTDNNETNGPLMLVPGSHRTFISCVGETPR 181 (277)
T ss_pred HcCCCeEEEeeeeeecCCCCCCCccCCcCCccccccCCCCCcCeEEEEEEcccCCCCCCCEEEecCCCCCcccCCccccc
Confidence 667543221111123344 2557889999753211000112368999999999864 477776 43221100 00
Q ss_pred -CC---------Ccc---------cc-cceEEecccccEEEEeecCCCCCCCCCCcccccCcccc-eEEEEEe
Q 022995 229 -SY---------DYQ---------KC-IGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKG-EKWVATK 280 (289)
Q Consensus 229 -~~---------~~~---------~~-~~~~V~P~~G~allF~n~~~~g~~D~~~~H~g~PV~~G-~K~v~~~ 280 (289)
.+ +.. +. .-+.+.-++|++|+|.. .++|++-|-... .|+++-.
T Consensus 182 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~~~aGDvl~f~~---------~~~H~S~~N~s~~~R~~l~l 245 (277)
T TIGR02408 182 DNYKQSLKKQEYGVPDPVSLTKLADQGGISTFTGKAGSAVWFDC---------NTMHGSGSNITPWPRSNVFM 245 (277)
T ss_pred hhhhhhhhhhhcCCCCHHHHHHHHHhCCceeeccCCceEEEEcc---------ccccCCCCCCCCCcceeEEE
Confidence 00 000 00 12356669999999965 899999998875 4555533
No 15
>PHA02866 Hypothetical protein; Provisional
Probab=97.83 E-value=7.1e-05 Score=68.77 Aligned_cols=129 Identities=16% Similarity=0.201 Sum_probs=84.9
Q ss_pred Cccceeeec-CCceeecccceeecceEEecCCCChhHHHHHHHHHHHHHcCCC---CcccccceeeecCCCCccccCccc
Q 022995 111 LRPSTLALR-KGETVDNTQGIRTSSGVFISAAEDESGTLDLIEEKIAKVTMLP---RINGEAFNILRYKIGQKYNSHYDA 186 (289)
Q Consensus 111 l~~s~v~~~-~G~~~~~~~~~RtS~~~~l~~~~~~~~i~~~I~~Ri~~~~g~p---~~~~E~lqv~rY~~G~~y~~H~D~ 186 (289)
+.+|.+... .|-. ......|.|.++ ++++.++. |+-. +.++ .-..+-+.+.+|..|.+|.-|+|-
T Consensus 32 w~~s~i~~~~~~i~-~~~~~~~k~k~~--------~~v~~~v~-~~~~-~~~~~~dv~v~~~~t~vk~~kg~~fdn~~~~ 100 (333)
T PHA02866 32 WEDSDILRHRQFIP-CEILVLEKSERT--------KQVFGAVK-RVLA-SSLTDYDVYVCEHLTIVKCFKGVGFDNRFSI 100 (333)
T ss_pred cchhhhhhhccCCc-eeeeehhhhhhh--------HHHHHHHH-HHHh-ccCCCccEEEeeeEEEEEEecccccccceeE
Confidence 788877642 2211 122334555443 24666665 3322 2232 235677999999999999999998
Q ss_pred CCCCCCCCCCCceEEEEEEecCCCCCCcceeccCCCCCCCCCCCCcccccceEEecccccEEEEeecCCCCCCCCCCccc
Q 022995 187 FDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHG 266 (289)
Q Consensus 187 ~~~~~~~~~~~~R~~T~liYLNdv~eGGeT~Fp~~~~~~~~~~~~~~~~~~~~V~P~~G~allF~n~~~~g~~D~~~~H~ 266 (289)
.... ....+-.++++||+.+++||+|.++.... -.++-. +=++| |....|+
T Consensus 101 ~~~~----~~~~~~Y~LvLyL~~p~~GGkt~iyv~~~--------------t~i~~~--~DvLF---------DKsl~h~ 151 (333)
T PHA02866 101 LTED----RHRGREYTLVLHLSSPKNGGKTDVCVGDK--------------TVISTA--DDFLL---------EKRSEQL 151 (333)
T ss_pred EEec----cCCceEEEEEEEEeccccCCceEEEeCCC--------------ceEeec--cceee---------ecccccc
Confidence 5432 23567899999999999999999984321 112211 22666 5689999
Q ss_pred ccCcccceEEEEE
Q 022995 267 SCPVVKGEKWVAT 279 (289)
Q Consensus 267 g~PV~~G~K~v~~ 279 (289)
..-|.+|+|.+|-
T Consensus 152 S~~V~~G~K~Val 164 (333)
T PHA02866 152 SNVVQEGEKIVVA 164 (333)
T ss_pred ceeeecCcEEEEE
Confidence 9999999998763
No 16
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=97.69 E-value=0.00014 Score=61.51 Aligned_cols=101 Identities=24% Similarity=0.286 Sum_probs=74.7
Q ss_pred ceeeecCCCCccccCcccCCCCCCCCCCCceEEEEEEecCCC---CCCcceeccCCCCCCCCCCCCcccccceEEecccc
Q 022995 169 FNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDL---EEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQG 245 (289)
Q Consensus 169 lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv---~eGGeT~Fp~~~~~~~~~~~~~~~~~~~~V~P~~G 245 (289)
.-+++|++|++=..|.|-.-..- =-+-+++-||+. ++|||.+...-..+.. .....+.+++|
T Consensus 64 plllrY~~gdyn~LHqdlyGe~v-------FPlQvv~lLs~Pg~DftGGEFVltEQrPR~Q--------SR~~V~~L~qG 128 (173)
T PF09859_consen 64 PLLLRYGPGDYNCLHQDLYGEHV-------FPLQVVILLSEPGEDFTGGEFVLTEQRPRMQ--------SRAMVLPLRQG 128 (173)
T ss_pred hhhheeCCCCccccccCCCCCcc-------cCeEEEEEcCCCCCcccCceEEEEEecCCcc--------CccccCCcCCC
Confidence 56899999999999998743211 124567779985 6899999864332221 25788999999
Q ss_pred cEEEEeec-CCC----CCCCCCCcccccCcccceEEEEEecccc
Q 022995 246 DGLLFYSL-LPN----GTIDPTSIHGSCPVVKGEKWVATKWIRD 284 (289)
Q Consensus 246 ~allF~n~-~~~----g~~D~~~~H~g~PV~~G~K~v~~~W~~~ 284 (289)
+|+||..- .|- |-.-..+-|++.+|.+|+++.+-.=||+
T Consensus 129 da~if~t~~RPv~G~rG~yRv~~RHgVS~vrsG~R~tLgliFHD 172 (173)
T PF09859_consen 129 DALIFATNHRPVRGARGYYRVNMRHGVSRVRSGERHTLGLIFHD 172 (173)
T ss_pred CEEEEecCCCCcCCCccceecccccccccccccceEEEEEEeec
Confidence 99999843 232 3334578999999999999999888876
No 17
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=97.60 E-value=0.00022 Score=60.83 Aligned_cols=168 Identities=17% Similarity=0.146 Sum_probs=85.4
Q ss_pred cEEEecCCCCHHHHHHHHHHhhcC----Ccc-ceeee-cCCceeecccceeecceEEecCCCC-hhHHH-H-HHHHHHHH
Q 022995 87 RALYFPNFATPEQCKSIINMAKLN----LRP-STLAL-RKGETVDNTQGIRTSSGVFISAAED-ESGTL-D-LIEEKIAK 157 (289)
Q Consensus 87 ~i~~i~nfLs~eEC~~Li~~a~~~----l~~-s~v~~-~~G~~~~~~~~~RtS~~~~l~~~~~-~~~i~-~-~I~~Ri~~ 157 (289)
..++++|+|+++||+.|.+..... ..+ ..... ..+.. ......++..... ...+. . .+.+.+++
T Consensus 5 Gyvvi~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (211)
T PF05721_consen 5 GYVVIRNVLSPEEVERLREELDRLDDRALEPDQDVSDFFDESF-------FGDYTEQLAKSPNFYDLFLHPPRILDLVRA 77 (211)
T ss_dssp SEEEETTSS-HHHHHHHHHHHHHHHHHHTTTTTSCEEEESTSC-------CCTCCCCGCCCHHHHHHHHTHHHHHHHHHH
T ss_pred cEEEECCcCCHHHHHHHHHHHHHHHhhhhcccccccccccccc-------ccccccccccchhhHHHHhhHHHHHHHHHH
Confidence 357899999999999999887652 111 11100 00000 0000111110000 01112 2 56666777
Q ss_pred HcCCCCc----ccccce-eeecC-CCCcc-ccCcccCCCCCCCCCCCceEEEEEEecCCCC-CCcceec-cCCCCCCCC-
Q 022995 158 VTMLPRI----NGEAFN-ILRYK-IGQKY-NSHYDAFDPQEYGPQKSQRVASFLVYLTDLE-EGGETMF-PFENGMNAD- 227 (289)
Q Consensus 158 ~~g~p~~----~~E~lq-v~rY~-~G~~y-~~H~D~~~~~~~~~~~~~R~~T~liYLNdv~-eGGeT~F-p~~~~~~~~- 227 (289)
++|-... ....++ +.+-. +|... .+|.|...... ....+.+|+.|+|.|+. +.|.+.+ |........
T Consensus 78 ~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~wH~D~~~~~~---~~~~~~~~~wi~L~d~~~~~G~~~v~pGSH~~~~~~ 154 (211)
T PF05721_consen 78 LLGSDVFVQNWLQSMYQDIVKPPGPGAAVQPWHQDAPYWHT---DPPENQLTVWIALDDITPENGPLEVVPGSHKWGVEP 154 (211)
T ss_dssp HHTSSEEEE--EEEEEEEEEE-TTTTC-EEEEBEHHHCSTE---ESSSCEEEEEEESS-BBTTCTCEEEETTGCCSCCEE
T ss_pred hhCCcchhhhhhHHHHHhhhhccccCCCCCCCCCCCccccc---CCccceEEEEEeeccCCcccCceEeecCCcCCCccc
Confidence 7776532 222221 23322 36665 99999865420 11578999999999984 5566766 432111000
Q ss_pred --CCC---C----------cccccceEEecccccEEEEeecCCCCCCCCCCcccccCcccc
Q 022995 228 --GSY---D----------YQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKG 273 (289)
Q Consensus 228 --~~~---~----------~~~~~~~~V~P~~G~allF~n~~~~g~~D~~~~H~g~PV~~G 273 (289)
... . ......+.+..++|++|+|.. .++|++-|-...
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gdvl~~~~---------~~~H~s~~N~s~ 206 (211)
T PF05721_consen 155 HEERFPEEDFPEEDDEESDEDEDEWVPVPMKAGDVLFFHS---------RLIHGSGPNTSD 206 (211)
T ss_dssp ECCCCCCCCCCCCHHHHHHHHCSGCEEE-BSTTEEEEEET---------TSEEEEE-B-SS
T ss_pred ccccccccccccccccccccccCceEEeecCCCeEEEEcC---------CccccCCCCCCc
Confidence 000 0 011245789999999999964 899999986543
No 18
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=97.44 E-value=0.00045 Score=53.93 Aligned_cols=89 Identities=24% Similarity=0.182 Sum_probs=49.4
Q ss_pred eeeecCCCCccccCcccCCCCCCCCCCCceEEEEEEecCCCCCCcceeccCCCCCCCCC-C-----CCcccccceEEecc
Q 022995 170 NILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADG-S-----YDYQKCIGLKVKPR 243 (289)
Q Consensus 170 qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv~eGGeT~Fp~~~~~~~~~-~-----~~~~~~~~~~V~P~ 243 (289)
-+..|++|++-.+|.= ....+|.++||+..++.|.+.|........-. . .....+....++|+
T Consensus 3 W~ni~~~g~~~~~H~H-----------~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 71 (101)
T PF13759_consen 3 WANIYRKGGYNEPHNH-----------PNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPE 71 (101)
T ss_dssp EEEEE-TT--EEEE-------------TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---
T ss_pred eEEEeCCCCccCceEC-----------CCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCC
Confidence 3566788888888842 23479999999998888999997643322110 0 11123457889999
Q ss_pred cccEEEEeecCCCCCCCCCCcccccCcccc-eEEEE
Q 022995 244 QGDGLLFYSLLPNGTIDPTSIHGSCPVVKG-EKWVA 278 (289)
Q Consensus 244 ~G~allF~n~~~~g~~D~~~~H~g~PV~~G-~K~v~ 278 (289)
.|++|||++ .+.|++.|-... .|+++
T Consensus 72 ~G~lvlFPs---------~l~H~v~p~~~~~~Risi 98 (101)
T PF13759_consen 72 EGDLVLFPS---------WLWHGVPPNNSDEERISI 98 (101)
T ss_dssp TTEEEEEET---------TSEEEE----SSS-EEEE
T ss_pred CCEEEEeCC---------CCEEeccCcCCCCCEEEE
Confidence 999999997 899999999875 56654
No 19
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=97.35 E-value=0.0024 Score=56.38 Aligned_cols=93 Identities=19% Similarity=0.066 Sum_probs=65.3
Q ss_pred cccceeeecCCCCccccCcccCCCCCCCCCCCceEEEEEEecCCCCCCcceeccCCCCCCC-C-----CCCCcccccceE
Q 022995 166 GEAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNA-D-----GSYDYQKCIGLK 239 (289)
Q Consensus 166 ~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv~eGGeT~Fp~~~~~~~-~-----~~~~~~~~~~~~ 239 (289)
....-+.++.+|++-..|+ . .+..+|-..||+....+|.+.|-....... . ...+...+..+.
T Consensus 95 i~~~W~ni~~~Gg~h~~H~---H--------p~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~ 163 (201)
T TIGR02466 95 IQKAWVNILPQGGTHSPHL---H--------PGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVY 163 (201)
T ss_pred EeeEeEEEcCCCCccCceE---C--------CCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEE
Confidence 4567788899999888885 2 245899999999988888888854221110 0 000111223567
Q ss_pred EecccccEEEEeecCCCCCCCCCCcccccCccc-ceEEEE
Q 022995 240 VKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVK-GEKWVA 278 (289)
Q Consensus 240 V~P~~G~allF~n~~~~g~~D~~~~H~g~PV~~-G~K~v~ 278 (289)
|+|+.|++|+|+| ..+|++.|-.. ++|.++
T Consensus 164 v~P~~G~lvlFPS---------~L~H~v~p~~~~~~RISi 194 (201)
T TIGR02466 164 VPPQEGRVLLFES---------WLRHEVPPNESEEERISV 194 (201)
T ss_pred ECCCCCeEEEECC---------CCceecCCCCCCCCEEEE
Confidence 9999999999998 89999999885 466655
No 20
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=97.07 E-value=0.0045 Score=53.35 Aligned_cols=157 Identities=22% Similarity=0.240 Sum_probs=76.7
Q ss_pred EEEecCCCCHHHHHHHHHHhhc--CCccceeeecCCceeec-------------ccceeecce-EEecCC--CChhHHHH
Q 022995 88 ALYFPNFATPEQCKSIINMAKL--NLRPSTLALRKGETVDN-------------TQGIRTSSG-VFISAA--EDESGTLD 149 (289)
Q Consensus 88 i~~i~nfLs~eEC~~Li~~a~~--~l~~s~v~~~~G~~~~~-------------~~~~RtS~~-~~l~~~--~~~~~i~~ 149 (289)
+++++||||++|.+.|++.... .+...+.. .++.... ...++-+.. .+-... ..+ +.+.
T Consensus 2 ~~~~~~fls~~e~~~l~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~y~y~~~~~~~~~~~~~~p-~~l~ 78 (194)
T PF13532_consen 2 LYYIPNFLSEEEAAELLNELRESAPFRQPTYP--MGKVYSLPRKLCGGLSWVGDGPSYRYSGKRPVRSKPWPPFP-EWLS 78 (194)
T ss_dssp EEEETTSS-HHHHHHHHHHHHHHS--B-GCCC--CCCECCECCE-SSEEEEEECT--CCCTCC-EECCCEBSCCH-HHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHhhCCCcCCeEc--CCCEEccceecceeeEEECCCCCeEcCCccccCCCCCCCcc-HHHH
Confidence 6899999999999999998863 12111111 0111000 011111111 010000 011 2344
Q ss_pred HHHHHHHHHcC-CCCcccccceeeecCCCCccccCcccCCCCCCCCCCCceEEEEEEecCCCCCCcceeccCCCCCCCCC
Q 022995 150 LIEEKIAKVTM-LPRINGEAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADG 228 (289)
Q Consensus 150 ~I~~Ri~~~~g-~p~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv~eGGeT~Fp~~~~~~~~~ 228 (289)
.+-+++....+ .+.......-|..|..|+.-.+|.|.... ..+..++|+-+ |+..+|-.....
T Consensus 79 ~~~~~~~~~~~~~~~~~~n~~liN~Y~~g~~i~~H~D~~~~-----~~~~~I~slSL-------G~~~~~~f~~~~---- 142 (194)
T PF13532_consen 79 RLLERLVEATGIPPGWRPNQCLINYYRDGSGIGPHSDDEEY-----GFGPPIASLSL-------GSSRVFRFRNKS---- 142 (194)
T ss_dssp HHHHHHHHHHT-SHSS--SEEEEEEESSTT-EEEE---TTC------CCSEEEEEEE-------ES-EEEEEEECG----
T ss_pred HHHHHHHHHhccccCCCCCEEEEEecCCCCCcCCCCCcccc-----cCCCcEEEEEE-------ccCceEEEeecc----
Confidence 44455555444 22223345678899999999999998632 13567777776 444444321110
Q ss_pred CCCcccccceEEecccccEEEEeecCCCCCCCCCCcccccCcccc
Q 022995 229 SYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKG 273 (289)
Q Consensus 229 ~~~~~~~~~~~V~P~~G~allF~n~~~~g~~D~~~~H~g~PV~~G 273 (289)
.....+.|.-..|+++++.. ...... |+..|+..+
T Consensus 143 ----~~~~~~~~~L~~gsl~vm~g-----~~r~~~-H~I~~~~~~ 177 (194)
T PF13532_consen 143 ----DDDEPIEVPLPPGSLLVMSG-----EARYDW-HGIPPVKKD 177 (194)
T ss_dssp ----GTS-EEEEEE-TTEEEEEET-----THHHHE-EEE-S-SCE
T ss_pred ----CCCccEEEEcCCCCEEEeCh-----HHhhhe-eEcccccCC
Confidence 01145788888999999962 333344 999999874
No 21
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=97.01 E-value=0.014 Score=54.22 Aligned_cols=180 Identities=16% Similarity=0.165 Sum_probs=94.0
Q ss_pred CcEEEecCCCCHHHHHHHHHHhhcCCc-cceeeecCCceeecccceeecceEEecCCCChhHHH------HHHHHHHHHH
Q 022995 86 PRALYFPNFATPEQCKSIINMAKLNLR-PSTLALRKGETVDNTQGIRTSSGVFISAAEDESGTL------DLIEEKIAKV 158 (289)
Q Consensus 86 P~i~~i~nfLs~eEC~~Li~~a~~~l~-~s~v~~~~G~~~~~~~~~RtS~~~~l~~~~~~~~i~------~~I~~Ri~~~ 158 (289)
-..++++++||++|++.|.+.++..+. ++........ ...|.. |-....+ +.+ .+|-+.++++
T Consensus 14 ~Gyv~~~~~~s~eei~~L~~~~~~~l~~~~~~~~~~~~-----~~~~~~---~~~~~~~--~~~~~l~~~~~l~~~~~~l 83 (288)
T TIGR01762 14 NGFIGPFTLYSPEEMKETWKRIRLRLLDRSAAPYQDLG-----GTNIAN---YDRHLDD--DFLASHICRPEICHRVESI 83 (288)
T ss_pred CCEEeCcCCCCHHHHHHHHHHHHHHhhccccccccCCC-----CceeEe---eeecccC--HHHHHHhcCHHHHHHHHHH
Confidence 345678999999999999988764332 2111100000 111211 1111111 112 2334445566
Q ss_pred cCCCCcccccceeeecCCCCccccCcccCCCCCCC------C--CCCceEEEEEEecCCCC-CCcceec-cCCCCCC-CC
Q 022995 159 TMLPRINGEAFNILRYKIGQKYNSHYDAFDPQEYG------P--QKSQRVASFLVYLTDLE-EGGETMF-PFENGMN-AD 227 (289)
Q Consensus 159 ~g~p~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~------~--~~~~R~~T~liYLNdv~-eGGeT~F-p~~~~~~-~~ 227 (289)
+|-+.-..-.--+.+...++.+.||.|.......+ + ....+.+|+.|-|.|+. +-|.+.| |...... .+
T Consensus 84 lG~~v~l~~~~~~~K~pg~~~~~wHQD~~y~~~~~~~~~~~p~~~~~~~~vt~wiaLdd~t~eNG~L~viPGSH~~~~~~ 163 (288)
T TIGR01762 84 LGPNVLCWRTEFFPKYPGDEGTDWHQADTFANASGKPQLVWPENEEFGGTITVWTAFTDATIENGCMQFIPGTHNSMNYD 163 (288)
T ss_pred hCCcEEeeeceeeeeCCCCCCCCCCccCcccccCCcccccccccCCCCCeEEEEEEcccCCcccCCEEEECCCCCCCCCC
Confidence 66443222122234444444589999964322111 0 11247899999999985 4566665 3221100 00
Q ss_pred C---------------------CC----------C--c--ccccceEEecccccEEEEeecCCCCCCCCCCcccccCccc
Q 022995 228 G---------------------SY----------D--Y--QKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVK 272 (289)
Q Consensus 228 ~---------------------~~----------~--~--~~~~~~~V~P~~G~allF~n~~~~g~~D~~~~H~g~PV~~ 272 (289)
. .+ + + .+...+.+.=++|++++|.. .++|++.|-++
T Consensus 164 ~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~l~~d~~~~~~~~~~v~~~lkaGd~~~f~~---------~t~HgS~~N~S 234 (288)
T TIGR01762 164 ETRRMTFEPDANNSVVKGGVRRGFFGYDYRQLQIDENWKPDEASAVPMQMKAGQFIIFWS---------TLMHASYPNSG 234 (288)
T ss_pred cccccccCccccccccccccccccccccchhhcccccCCccccceeeeeeCCceEEEECC---------CceecCCCCCC
Confidence 0 00 0 0 01123567778999999964 89999999988
Q ss_pred c--eEEEE-Eecccc
Q 022995 273 G--EKWVA-TKWIRD 284 (289)
Q Consensus 273 G--~K~v~-~~W~~~ 284 (289)
. .++++ ..|+..
T Consensus 235 ~~~~R~~~~~ry~~~ 249 (288)
T TIGR01762 235 ESQMRMGFASRYVPS 249 (288)
T ss_pred CCceEEEEEEEEcCC
Confidence 4 35554 446644
No 22
>KOG3844 consensus Predicted component of NuA3 histone acetyltransferase complex [Chromatin structure and dynamics]
Probab=96.87 E-value=0.0091 Score=57.17 Aligned_cols=110 Identities=24% Similarity=0.347 Sum_probs=79.5
Q ss_pred HHHHHHcCCCCcccccceeeecCCCCccccCcccCCCCCCCCCCCceEEEEEEecCCCC----CCccee-ccCCCCCCCC
Q 022995 153 EKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLE----EGGETM-FPFENGMNAD 227 (289)
Q Consensus 153 ~Ri~~~~g~p~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv~----eGGeT~-Fp~~~~~~~~ 227 (289)
.-++.++|.-....-++.+..|..|.+--.|-|-. +.|..++++||-+.. -||+.. ||.....
T Consensus 103 ~~~q~vtg~~s~sk~Dms~s~Y~kgd~LL~HDD~i---------etRriaFilYL~~~Dwds~~GG~L~Lf~~d~~~--- 170 (476)
T KOG3844|consen 103 GEIQDVTGGLSTSKIDMSGSYYRKGDHLLCHDDVI---------ETRRIAFILYLVDPDWDSEYGGELRLFPDDCPS--- 170 (476)
T ss_pred HHHHhccCccccceeeeceeeeeccceeccccccc---------cceEEEEEEEecCcccccccCceeEeccccccc---
Confidence 34555564433334468899999999999998764 578999999999864 377776 5543211
Q ss_pred CCCCcccccceEEecccccEEEEeecCCCCCCCCCCcccccCcccce-EEEEEeccccc
Q 022995 228 GSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGE-KWVATKWIRDQ 285 (289)
Q Consensus 228 ~~~~~~~~~~~~V~P~~G~allF~n~~~~g~~D~~~~H~g~PV~~G~-K~v~~~W~~~~ 285 (289)
.....-.++.|.-...++|.- -+.++|.+.-|.+-+ +..++.|+|..
T Consensus 171 ----~P~s~~asl~P~~Nql~fFeV-------sp~SFH~V~Ev~sde~RlSIsGWfH~p 218 (476)
T KOG3844|consen 171 ----QPKSVAASLEPQWNQLVFFEV-------SPISFHDVEEVLSDEPRLSISGWFHFP 218 (476)
T ss_pred ----CccchhhccCcccceEEEEEe-------cccchhhHHHHhccCcceeEeeeecCC
Confidence 011134568899999999974 368999999999865 49999999865
No 23
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=96.14 E-value=0.018 Score=49.50 Aligned_cols=80 Identities=21% Similarity=0.284 Sum_probs=60.7
Q ss_pred CccccCcccCCCCCCCCCCCceEEEEEEecCCC-CCCcceeccCCCCCCCCCCCCcccccceEEecccccEEEEeecCCC
Q 022995 178 QKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDL-EEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPN 256 (289)
Q Consensus 178 ~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv-~eGGeT~Fp~~~~~~~~~~~~~~~~~~~~V~P~~G~allF~n~~~~ 256 (289)
-....|.|..+. +--+++++-|... ++||..++|..+.. -.|++|.|..|++|+|-.
T Consensus 85 r~t~~HrD~~~~--------~~~~~~~~t~~~gd~~~g~l~lp~~~~~----------~~g~~~~~~~GtVl~~~~---- 142 (171)
T PF12851_consen 85 RCTHSHRDTHNM--------PNGYDVLCTLGRGDYDGGRLELPGLDPN----------ILGVAFAYQPGTVLIFCA---- 142 (171)
T ss_pred cCccceecCCCC--------CCCeEEEEecCCccccCceEeccccccc----------cCCEEEecCCCcEEEEcc----
Confidence 346678887543 2246777666554 89999999972211 158999999999999975
Q ss_pred CCCCCCCcccccCccc-----ceEEEEEeccc
Q 022995 257 GTIDPTSIHGSCPVVK-----GEKWVATKWIR 283 (289)
Q Consensus 257 g~~D~~~~H~g~PV~~-----G~K~v~~~W~~ 283 (289)
....|+..||.. |+++.+.-+.|
T Consensus 143 ----~~~~Hgvtpv~~~~~~~~~R~slvfy~h 170 (171)
T PF12851_consen 143 ----KRELHGVTPVESPNRNHGTRISLVFYQH 170 (171)
T ss_pred ----cceeeecCcccCCCCCCCeEEEEEEEeE
Confidence 468999999997 99999988776
No 24
>PHA02923 hypothetical protein; Provisional
Probab=95.91 E-value=0.049 Score=50.44 Aligned_cols=98 Identities=14% Similarity=0.182 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHHHcCCCC--cccccceeeecCCCCccccCcccCCCCCCCCCCCceEEEEEEecCCCCCCcceeccCCC
Q 022995 145 SGTLDLIEEKIAKVTMLPR--INGEAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFEN 222 (289)
Q Consensus 145 ~~i~~~I~~Ri~~~~g~p~--~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv~eGGeT~Fp~~~ 222 (289)
+++.++|++.|-+-+.... .....+.+..|++|.+ .|. . ....-..+++||+..+.||+|.|+..+
T Consensus 43 ~di~~~ir~liy~elk~v~~V~V~n~iT~ikYekgd~--~~l--~--------~~~~~y~LvLyL~~p~~GGt~i~~~~~ 110 (315)
T PHA02923 43 IDISECIREILYKQFKNVRNIEVSSTISFIKYNPFND--TTL--T--------DDNMGYYLVIYLNRPKSGKTLIYPTPE 110 (315)
T ss_pred hHHHHHHHHHHHHhccCcceEEEeceEEEEEEcCCCc--cee--e--------cCceEEEEEEEEeccCCCCeEEEecCC
Confidence 3588888887766554321 2334588999999985 221 1 123678899999999999999998643
Q ss_pred CCCCCCCCCcccccceEEecccccEEEEeecCCCCCCCCCCcccccCcccceEEEEEe
Q 022995 223 GMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVATK 280 (289)
Q Consensus 223 ~~~~~~~~~~~~~~~~~V~P~~G~allF~n~~~~g~~D~~~~H~g~PV~~G~K~v~~~ 280 (289)
. .++-. +=++| |....|+..-|.+|+|.||-.
T Consensus 111 t---------------~i~~~--~DvLF---------dKsl~h~s~~V~~G~K~VAl~ 142 (315)
T PHA02923 111 T---------------VITSS--EDIMF---------SKSLNFRFENVKRGYKLVMCS 142 (315)
T ss_pred C---------------eEeec--cceee---------ecccccceeeeecCcEEEEEE
Confidence 1 12222 22666 568999999999999998754
No 25
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=95.44 E-value=0.58 Score=41.73 Aligned_cols=160 Identities=20% Similarity=0.259 Sum_probs=92.3
Q ss_pred cCCcEEEecCCCCHHHHHHHHHHhhc-----CCccceeeecCCce-------------eecccceeecceEEecCCCChh
Q 022995 84 WMPRALYFPNFATPEQCKSIINMAKL-----NLRPSTLALRKGET-------------VDNTQGIRTSSGVFISAAEDES 145 (289)
Q Consensus 84 ~~P~i~~i~nfLs~eEC~~Li~~a~~-----~l~~s~v~~~~G~~-------------~~~~~~~RtS~~~~l~~~~~~~ 145 (289)
..|.++++++|. .+|.++|++.... .+.. .....|.. ......+|-|...-... ....
T Consensus 16 ~~~g~~~~~~~~-~~~~~~l~~~~~~~~~~~p~~~--~~~~gg~~msv~mt~~G~~~W~~d~~~YrYs~~~~~~~-~pwp 91 (213)
T PRK15401 16 LAPGAVLLRGFA-LAAAEALLAAIEAVAAQAPFRH--MVTPGGYTMSVAMTNCGALGWVTDRRGYRYSPIDPLTG-KPWP 91 (213)
T ss_pred cCCCcEEeCCCC-HHHHHHHHHHHHHHHhcCCccc--eecCCCCcceeEEeccccceEecCCCCcccCCcCCCCC-CCCC
Confidence 578899999996 8888888766554 1222 11111211 00002333332110000 0111
Q ss_pred ---HHHHHHHHHHHHHcCCCCcccccceeeecCCCCccccCcccCCCCCCCCCCCceEEEEEEecCCCCCCcceeccCCC
Q 022995 146 ---GTLDLIEEKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFEN 222 (289)
Q Consensus 146 ---~i~~~I~~Ri~~~~g~p~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv~eGGeT~Fp~~~ 222 (289)
+.+..|.++++...+.+....+..-|..|.+|+.-.+|.|..... ...-++++-+ |..-.|-...
T Consensus 92 ~~P~~l~~L~~~~~~~~~~~~~~p~a~LvN~Y~~G~~mg~H~D~~E~~-----~~~pI~SvSL-------G~~~~F~~~~ 159 (213)
T PRK15401 92 AMPASFLALAQRAAAAAGFPGFQPDACLINRYAPGAKLSLHQDKDERD-----FRAPIVSVSL-------GLPAVFQFGG 159 (213)
T ss_pred CchHHHHHHHHHHHHHcCCCCCCCCEEEEEeccCcCccccccCCCccc-----CCCCEEEEeC-------CCCeEEEecc
Confidence 257888888888887654445668899999999999999974221 1233555553 4444554321
Q ss_pred CCCCCCCCCcccccceEEecccccEEEEeecCCCCCCCCCCcccccCcccc
Q 022995 223 GMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKG 273 (289)
Q Consensus 223 ~~~~~~~~~~~~~~~~~V~P~~G~allF~n~~~~g~~D~~~~H~g~PV~~G 273 (289)
... .....+|.-..|++|++- |.. ...+|+.-|+..|
T Consensus 160 ~~~--------~~~~~~l~L~~Gdllvm~-----G~s-r~~~HgVp~~~~~ 196 (213)
T PRK15401 160 LKR--------SDPLQRILLEHGDVVVWG-----GPS-RLRYHGILPLKAG 196 (213)
T ss_pred cCC--------CCceEEEEeCCCCEEEEC-----chH-hheeccCCcCCCC
Confidence 110 013568999999999994 222 3567999888765
No 26
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.87 E-value=0.35 Score=41.71 Aligned_cols=96 Identities=22% Similarity=0.226 Sum_probs=57.4
Q ss_pred EeecCCcEEEecCCCCHHHHHHHHHHhhcCCccceeee------cCCceeecccceeecceEEecCCCChhHHHHHHHHH
Q 022995 81 VLSWMPRALYFPNFATPEQCKSIINMAKLNLRPSTLAL------RKGETVDNTQGIRTSSGVFISAAEDESGTLDLIEEK 154 (289)
Q Consensus 81 ~ls~~P~i~~i~nfLs~eEC~~Li~~a~~~l~~s~v~~------~~G~~~~~~~~~RtS~~~~l~~~~~~~~i~~~I~~R 154 (289)
++...|.++||+||+++||-..+.+..+..-++-.-+. +-|.- .-....+. .+-+ +-++++-.+
T Consensus 7 ~V~~~pt~~YIPnfIt~EEe~~~lshIe~ap~pkW~~L~NRRLqNyGGv--------vh~~glip-eelP-~wLq~~v~k 76 (224)
T KOG3200|consen 7 IVKSAPTMIYIPNFITEEEENLYLSHIENAPQPKWRVLANRRLQNYGGV--------VHKTGLIP-EELP-PWLQYYVDK 76 (224)
T ss_pred EecccceEEEcCCccChHHHHHHHHHHhcCCCchhHHHHhhhhhhcCCc--------cccCCcCc-cccC-HHHHHHHHH
Confidence 45568899999999999999999888765322221111 00110 00112222 2222 345666666
Q ss_pred HHHHcCCCCcccccceeeecCCCCccccCcccC
Q 022995 155 IAKVTMLPRINGEAFNILRYKIGQKYNSHYDAF 187 (289)
Q Consensus 155 i~~~~g~p~~~~E~lqv~rY~~G~~y~~H~D~~ 187 (289)
|.. +|+-.......-|..|.+||---||.|+-
T Consensus 77 inn-lglF~s~~NHVLVNeY~pgqGImPHtDGP 108 (224)
T KOG3200|consen 77 INN-LGLFKSPANHVLVNEYLPGQGIMPHTDGP 108 (224)
T ss_pred hhc-ccccCCCcceeEeecccCCCCcCcCCCCC
Confidence 663 33322234456788899999999999984
No 27
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.81 E-value=1 Score=39.15 Aligned_cols=102 Identities=22% Similarity=0.209 Sum_probs=70.9
Q ss_pred ceeeecCCCCccccCcccCCCCCCCCCCCceEEEEEEecCCC---CCCcceeccCCCCCCCCCCCCcccccceEEecccc
Q 022995 169 FNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDL---EEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQG 245 (289)
Q Consensus 169 lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv---~eGGeT~Fp~~~~~~~~~~~~~~~~~~~~V~P~~G 245 (289)
.-++.|++|++--.|.|-.-.- -=-+-+.|-|+++ +.|||.+.-.-..+. ...+-.|.-++|
T Consensus 126 pLlLqYgpgD~NcLHQDLYGel-------vFPLQvailLsePg~DfTGGEF~lvEQRPR~--------QSr~~vvpLrqG 190 (236)
T COG3826 126 PLLLQYGPGDYNCLHQDLYGEL-------VFPLQVAILLSEPGTDFTGGEFVLVEQRPRM--------QSRPTVVPLRQG 190 (236)
T ss_pred ceeEEecCCccchhhhhhhhce-------eeeeeEEEeccCCCCcccCceEEEEeccccc--------ccCCceeeccCC
Confidence 4588999999999999864211 1124566678886 479988775322221 114677888999
Q ss_pred cEEEEeecCC--CC---CCCCCCcccccCcccceEEEEEeccccc
Q 022995 246 DGLLFYSLLP--NG---TIDPTSIHGSCPVVKGEKWVATKWIRDQ 285 (289)
Q Consensus 246 ~allF~n~~~--~g---~~D~~~~H~g~PV~~G~K~v~~~W~~~~ 285 (289)
++++|-.-.. +| ---....|+..-+.+|+++.+-.=||+.
T Consensus 191 ~g~vFavr~RPv~gtrG~~r~~lRHGvS~lRSG~R~t~GiIFHDA 235 (236)
T COG3826 191 DGVVFAVRDRPVQGTRGWYRVPLRHGVSRLRSGERHTVGIIFHDA 235 (236)
T ss_pred ceEEEEeecCcccCccCccccchhcchhhhhcccceeeEEEeecC
Confidence 9999975421 22 2334678999999999999998887764
No 28
>PF06822 DUF1235: Protein of unknown function (DUF1235); InterPro: IPR009641 This family contains a number of poxviral proteins, which include Vaccinia virus, A37, the function of which is unknown.
Probab=87.73 E-value=3.2 Score=38.09 Aligned_cols=103 Identities=20% Similarity=0.234 Sum_probs=73.0
Q ss_pred ChhHHHHHHHHHHHHHcCCCCcccccceeeecCCCCccccCcccCCCCCCCCCCCceEEEEEEecCCCCCCcceeccCCC
Q 022995 143 DESGTLDLIEEKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFEN 222 (289)
Q Consensus 143 ~~~~i~~~I~~Ri~~~~g~p~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv~eGGeT~Fp~~~ 222 (289)
|...+++.|++++ .-+.-.++.+++..|+.|+-++.-.+ ...+.+++++=|.....||..++-...
T Consensus 30 h~~~i~~EI~kh~----~e~V~~~~~i~i~~f~~~~~~~~~~~----------~~~~~sr~lvCi~sakkGG~iii~~~~ 95 (266)
T PF06822_consen 30 HVKIILSEIEKHI----NEPVYVNNLISIQVFDKGQCYKSRIQ----------DNSSLSRILVCIQSAKKGGCIIIRNTI 95 (266)
T ss_pred hHHHHHHHHHHhc----CCeEEecCcEEEEEEeCCCceecccc----------CCCcceeEEEEeeccccCCeEEEeecc
Confidence 4445667776665 33444567899999999987753221 124578899999999999998875432
Q ss_pred CCCCCCCCCcccccceEEecccccEEEEeecCCCCCCCCCCcccccCcccceEEEEE
Q 022995 223 GMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVAT 279 (289)
Q Consensus 223 ~~~~~~~~~~~~~~~~~V~P~~G~allF~n~~~~g~~D~~~~H~g~PV~~G~K~v~~ 279 (289)
.. ..-.++|..|.||+-- +....-..+|++|.-.+++
T Consensus 96 ~~-----------~kkii~~~~~~aVlLs---------pl~~y~Vs~V~~G~~i~i~ 132 (266)
T PF06822_consen 96 SN-----------DKKIITPNQNMAVLLS---------PLADYDVSNVTKGSMIIIV 132 (266)
T ss_pred cC-----------CceEEecCCCeEEEec---------chhheEEEEecCCcEEEEE
Confidence 11 3568999999999985 4667778888888766554
No 29
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=87.25 E-value=3 Score=38.25 Aligned_cols=108 Identities=16% Similarity=0.137 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHcCCCCc--------ccccceeeecCCC------CccccCcccCCCCCCCCCCCceEEEEEEecCCCCC
Q 022995 147 TLDLIEEKIAKVTMLPRI--------NGEAFNILRYKIG------QKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEE 212 (289)
Q Consensus 147 i~~~I~~Ri~~~~g~p~~--------~~E~lqv~rY~~G------~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv~e 212 (289)
+..+|.+-++..+|++.+ ....+++.+|.+- --..+|.|.. .+|+|+. +++
T Consensus 88 l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HtD~g------------~lTlL~q-d~v-- 152 (262)
T PLN03001 88 LAQKLLAFISESLGLPCSCIEDAVGDFYQNITVSYYPPCPQPELTLGLQSHSDFG------------AITLLIQ-DDV-- 152 (262)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhcCcchhheeecCCCCCCcccccCCcCCcCCC------------eeEEEEe-CCC--
Confidence 455555566666777632 1224788889652 1255777753 5788755 443
Q ss_pred CcceeccCCCCCCCCCCCCcccccceEEecccccEEEEe----ecCCCCCCCCCCcccccCcccceEEEEEecccc
Q 022995 213 GGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFY----SLLPNGTIDPTSIHGSCPVVKGEKWVATKWIRD 284 (289)
Q Consensus 213 GGeT~Fp~~~~~~~~~~~~~~~~~~~~V~P~~G~allF~----n~~~~g~~D~~~~H~g~PV~~G~K~v~~~W~~~ 284 (289)
||==+... ...+.|+|.+|..||-- ..+.||. -..+.|.+.-....++|++..+++-
T Consensus 153 ~GLqV~~~--------------g~Wi~V~p~p~a~vVNiGD~l~~~tng~-~~S~~HRVv~~~~~~R~Sia~F~~p 213 (262)
T PLN03001 153 EGLQLLKD--------------AEWLMVPPISDAILIIIADQTEIITNGN-YKSAQHRAIANANKARLSVATFHDP 213 (262)
T ss_pred CceEEeeC--------------CeEEECCCCCCcEEEEccHHHHHHhCCc-cccccceEEcCCCCCEEEEEEEEcC
Confidence 45323221 14689999999877742 1122332 2578999985555679998877653
No 30
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=84.71 E-value=9 Score=36.50 Aligned_cols=105 Identities=19% Similarity=0.189 Sum_probs=62.1
Q ss_pred HHHHHHHHHcCCC--Cc--------ccccceeeecCCCC------ccccCcccCCCCCCCCCCCceEEEEEEecCCCCCC
Q 022995 150 LIEEKIAKVTMLP--RI--------NGEAFNILRYKIGQ------KYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEG 213 (289)
Q Consensus 150 ~I~~Ri~~~~g~p--~~--------~~E~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv~eG 213 (289)
.|.+-++..+|++ .+ ....+++++|.+.. .-.+|.|.. .+|+|+- ++ .|
T Consensus 173 ~ll~~lA~~Lgl~~~~~~f~~~~~~~~~~lRl~~YPp~~~~~~~~g~~aHTD~g------------~lTlL~Q-d~--v~ 237 (341)
T PLN02984 173 TLFEAIAKTLSLELSGDQKMSYLSESTGVIRVYRYPQCSNEAEAPGMEVHTDSS------------VISILNQ-DE--VG 237 (341)
T ss_pred HHHHHHHHHcCCCcchhHHHHHhcCccceEEEEeCCCCCCcccccCccCccCCC------------ceEEEEe-CC--CC
Confidence 3334444556777 31 12258999997632 245777763 5788754 33 35
Q ss_pred cceeccCCCCCCCCCCCCcccccceEEecccccEEEEee----cCCCCCCCCCCccccc-CcccceEEEEEecccc
Q 022995 214 GETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYS----LLPNGTIDPTSIHGSC-PVVKGEKWVATKWIRD 284 (289)
Q Consensus 214 GeT~Fp~~~~~~~~~~~~~~~~~~~~V~P~~G~allF~n----~~~~g~~D~~~~H~g~-PV~~G~K~v~~~W~~~ 284 (289)
|==+... ...+.|+|..|..||--- .+.||.. ..+.|.+. +-....+|.+.-+++-
T Consensus 238 GLQV~~~--------------g~Wv~V~p~pgalVVNiGD~Le~wTNg~~-kSt~HRVv~~~~~~~R~Sia~F~~P 298 (341)
T PLN02984 238 GLEVMKD--------------GEWFNVKPIANTLVVNLGDMMQVISDDEY-KSVLHRVGKRNKKKERYSICYFVFP 298 (341)
T ss_pred CeeEeeC--------------CceEECCCCCCeEEEECChhhhhhcCCee-eCCCCccccCCCCCCeEEEEEEecC
Confidence 5333221 147899999999888531 1223322 57899993 4334579998877654
No 31
>PLN02485 oxidoreductase
Probab=84.48 E-value=5.2 Score=37.70 Aligned_cols=109 Identities=13% Similarity=0.008 Sum_probs=63.1
Q ss_pred HHHHHHHHHHcCCCCc-----c-c---ccceeeecCCCC----------ccccCcccCCCCCCCCCCCceEEEEEEecCC
Q 022995 149 DLIEEKIAKVTMLPRI-----N-G---EAFNILRYKIGQ----------KYNSHYDAFDPQEYGPQKSQRVASFLVYLTD 209 (289)
Q Consensus 149 ~~I~~Ri~~~~g~p~~-----~-~---E~lqv~rY~~G~----------~y~~H~D~~~~~~~~~~~~~R~~T~liYLNd 209 (289)
..|.+-++..+|++.+ . . -.+++++|.+-. .-.+|+|+. .+|+|. .|
T Consensus 157 ~~ll~~~a~~Lgl~~~~f~~~~~~~~~~~lrl~~YP~~~~~~~~~~~~~g~~~HTD~g------------~lTlL~--qd 222 (329)
T PLN02485 157 RKILRGIALALGGSPDEFEGKMAGDPFWVMRIIGYPGVSNLNGPPENDIGCGAHTDYG------------LLTLVN--QD 222 (329)
T ss_pred HHHHHHHHHHcCCChHHhhhhhccCccceEEEEeCCCCccccCCcccCcccccccCCC------------eEEEEe--cc
Confidence 3334445555677532 1 1 148899997632 145677763 577763 44
Q ss_pred CCCCcceeccCCCCCCCCCCCCcccccceEEecccccEEEEe----ecCCCCCCCCCCcccccCcccceEEEEEeccccc
Q 022995 210 LEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFY----SLLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQ 285 (289)
Q Consensus 210 v~eGGeT~Fp~~~~~~~~~~~~~~~~~~~~V~P~~G~allF~----n~~~~g~~D~~~~H~g~PV~~G~K~v~~~W~~~~ 285 (289)
...||-=+.... ...+.|+|.+|..||-- ..+.||. -..+.|.+.+....++|++.-+++-.
T Consensus 223 ~~~~GLqV~~~~-------------g~Wi~V~p~pg~~vVNiGD~L~~~TnG~-~~St~HRVv~~~~~~R~Si~~F~~p~ 288 (329)
T PLN02485 223 DDITALQVRNLS-------------GEWIWAIPIPGTFVCNIGDMLKIWSNGV-YQSTLHRVINNSPKYRVCVAFFYETN 288 (329)
T ss_pred CCCCeeeEEcCC-------------CcEEECCCCCCcEEEEhHHHHHHHHCCE-eeCCCceecCCCCCCeEEEEEEecCC
Confidence 344553333321 14689999999887742 0122332 25789999866555799988776543
No 32
>PHA02985 hypothetical protein; Provisional
Probab=80.24 E-value=9.3 Score=35.03 Aligned_cols=102 Identities=16% Similarity=0.163 Sum_probs=70.4
Q ss_pred CChhHHHHHHHHHHHHHcCCCCcccccceeeecCCCCccccCcccCCCCCCCCCCCceEEEEEEecCCCCCCcceeccCC
Q 022995 142 EDESGTLDLIEEKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFE 221 (289)
Q Consensus 142 ~~~~~i~~~I~~Ri~~~~g~p~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv~eGGeT~Fp~~ 221 (289)
+|.+.+++.|++++.+ +.-..+.+++..|+.|+.|.-- ...|+..+++=+..+..||..+--..
T Consensus 36 ~h~~~I~~EI~~~i~E----~V~~~n~i~i~~f~~~~~~~~~------------~~~~~SkilICiqsAkkGG~iIi~~~ 99 (271)
T PHA02985 36 EHQKIILDEIEQYIDE----TVLVKNLISIEVFNKKKKYYQN------------IPSRLSKIIICIQSAKKGGCIIIINN 99 (271)
T ss_pred hhhhHHHHHHHHhcCC----eEEecceeEEEEEcCCcceEee------------CCCCceeEEEEEeecccCCEEEEecc
Confidence 3445677777777632 3335567899999888553321 23467899999999999999887431
Q ss_pred CCCCCCCCCCcccccceEEecccccEEEEeecCCCCCCCCCCcccccCcccceEEEEE
Q 022995 222 NGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVAT 279 (289)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~V~P~~G~allF~n~~~~g~~D~~~~H~g~PV~~G~K~v~~ 279 (289)
.. ...-.++|..|.||+-.+ .+.....+|.+|.-.++.
T Consensus 100 -~~----------~~K~ii~~~~n~aVlLSP---------Ls~Y~Vs~V~kGsli~i~ 137 (271)
T PHA02985 100 -IT----------NNKKIITLNINHIIILSP---------LSKYTVSKVSKGSLIIIV 137 (271)
T ss_pred -cc----------cCceEEecCCCeEEEecc---------hhhceEEEecCCcEEEEE
Confidence 11 035689999999999854 677778888888765543
No 33
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]
Probab=78.61 E-value=30 Score=30.46 Aligned_cols=102 Identities=20% Similarity=0.202 Sum_probs=61.8
Q ss_pred cceeecceEEecCCCChhHHHHHHHHHHHHHcCCCCcccccceeeecCCCCccccCcccCCCCCCCCCCCceEEEEEEec
Q 022995 128 QGIRTSSGVFISAAEDESGTLDLIEEKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYL 207 (289)
Q Consensus 128 ~~~RtS~~~~l~~~~~~~~i~~~I~~Ri~~~~g~p~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYL 207 (289)
..+|.+....+..... +.+-.+...+...+|.+....|..-+.+|.+|+.-.+|.|..... ...-++++-+=
T Consensus 69 ~gy~y~~~~p~~~~p~--p~l~~~~~~~~~~~g~~~~~~ea~Lvn~Y~pGd~ig~HqD~~e~~-----~~~~v~slSLg- 140 (194)
T COG3145 69 RGYRYSLRSPLTGKPW--PPLLALFHDLFGAAGYPFEGPEAVLVNRYRPGASIGWHQDKDEED-----DRPPVASLSLG- 140 (194)
T ss_pred ccccccccccCCCCCC--CccHHHHHHHHHHhcCCCCChhheeEEeccCCCcccccccccccc-----CCCceEEEecC-
Confidence 4466665554443321 223344445556788888888999999999999999999975431 11124554432
Q ss_pred CCCCCCcceeccCCCCCCCCCCCCcccccceEEecccccEEEEe
Q 022995 208 TDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFY 251 (289)
Q Consensus 208 Ndv~eGGeT~Fp~~~~~~~~~~~~~~~~~~~~V~P~~G~allF~ 251 (289)
....|-....+. .....++.=..|++|++-
T Consensus 141 ------~~~~F~~~~~~r--------~~~~~~~~L~~Gdvvvm~ 170 (194)
T COG3145 141 ------APCIFRLRGRRR--------RGPGLRLRLEHGDVVVMG 170 (194)
T ss_pred ------CCeEEEeccccC--------CCCceeEEecCCCEEEec
Confidence 223332211110 015788899999999995
No 34
>COG4340 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.33 E-value=1.9 Score=37.66 Aligned_cols=51 Identities=27% Similarity=0.469 Sum_probs=30.3
Q ss_pred EEecCC--CCCCcceeccCCCCCCCCCCCCcccccceEEecccccEEEEeecCCCCCCCCCCcccccCccc
Q 022995 204 LVYLTD--LEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVK 272 (289)
Q Consensus 204 liYLNd--v~eGGeT~Fp~~~~~~~~~~~~~~~~~~~~V~P~~G~allF~n~~~~g~~D~~~~H~g~PV~~ 272 (289)
.|.+-| .-.||||..+...... .+..---..|.+++-. |.+.+|..||+.-
T Consensus 149 ~I~~vDR~NI~gGet~lY~~~~~~----------p~f~kvl~pGe~~~l~--------Dh~~~H~~tpi~p 201 (226)
T COG4340 149 IIMLVDRQNIDGGETDLYAPDGAS----------PGFFKVLAPGEAVFLD--------DHRVLHGVTPIVP 201 (226)
T ss_pred EEEEeeeccccCceEEEEccCCCC----------cceEEeccCCcEEEec--------cchhcccccceec
Confidence 334444 3489999987543211 2222223456655542 6899999999864
No 35
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=78.00 E-value=14 Score=35.33 Aligned_cols=88 Identities=15% Similarity=0.123 Sum_probs=54.4
Q ss_pred cceeeecCCCC------ccccCcccCCCCCCCCCCCceEEEEEEecCCCCCCcceeccCCCCCCCCCCCCcccccceEEe
Q 022995 168 AFNILRYKIGQ------KYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVK 241 (289)
Q Consensus 168 ~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv~eGGeT~Fp~~~~~~~~~~~~~~~~~~~~V~ 241 (289)
.+++.+|.+-. ...+|+|.. .+|+|+ .|...||==+... + ..+.|+
T Consensus 204 ~lRl~~YPp~~~~~~~~g~~~HTD~g------------~lTlL~--qd~~v~GLQV~~~--g------------~Wi~V~ 255 (348)
T PLN00417 204 DTRFNMYPPCPRPDKVIGVKPHADGS------------AFTLLL--PDKDVEGLQFLKD--G------------KWYKAP 255 (348)
T ss_pred eeeeeecCCCCCcccccCCcCccCCC------------ceEEEE--ecCCCCceeEeEC--C------------eEEECC
Confidence 37899996521 245787763 577763 3433455333321 1 478999
Q ss_pred cccccEEEEee----cCCCCCCCCCCcccccCcccceEEEEEecccc
Q 022995 242 PRQGDGLLFYS----LLPNGTIDPTSIHGSCPVVKGEKWVATKWIRD 284 (289)
Q Consensus 242 P~~G~allF~n----~~~~g~~D~~~~H~g~PV~~G~K~v~~~W~~~ 284 (289)
|..|..||--- .+.||. -..++|++.+...+++|++.-+++-
T Consensus 256 p~pg~lVVNiGD~Le~~Tng~-~kSt~HRVv~~~~~~R~Si~fF~~P 301 (348)
T PLN00417 256 IVPDTILINVGDQMEIMSNGI-YKSPVHRVVTNREKERISVATFCIP 301 (348)
T ss_pred CCCCcEEEEcChHHHHHhCCe-ecccceEEecCCCCCEEEEEEEecC
Confidence 99998887521 112232 3688999976656689998877653
No 36
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=76.67 E-value=12 Score=34.94 Aligned_cols=87 Identities=15% Similarity=0.193 Sum_probs=51.5
Q ss_pred ceeeecCCC----Cc--cccCcccCCCCCCCCCCCceEEEEEEecCCCCCCcceeccCCCCCCCCCCCCcccccceEEec
Q 022995 169 FNILRYKIG----QK--YNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKP 242 (289)
Q Consensus 169 lqv~rY~~G----~~--y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv~eGGeT~Fp~~~~~~~~~~~~~~~~~~~~V~P 242 (289)
+++++|.+- .. ..+|.|.. .+|+|+.=+ ..|| +.... . ...+.|.|
T Consensus 155 lrl~~YP~~~~~~~~~G~~~HtD~g------------~lTlL~q~~--~v~G-LqV~~-~------------g~Wi~V~p 206 (303)
T PLN02403 155 TKVAKYPECPRPELVRGLREHTDAG------------GIILLLQDD--QVPG-LEFLK-D------------GKWVPIPP 206 (303)
T ss_pred eeeEcCCCCCCcccccCccCccCCC------------eEEEEEecC--CCCc-eEecc-C------------CeEEECCC
Confidence 789999652 11 45788763 466664332 2344 33321 1 14688999
Q ss_pred ccccEEEEee-----cCCCCCCCCCCcccccCcccceEEEEEecccc
Q 022995 243 RQGDGLLFYS-----LLPNGTIDPTSIHGSCPVVKGEKWVATKWIRD 284 (289)
Q Consensus 243 ~~G~allF~n-----~~~~g~~D~~~~H~g~PV~~G~K~v~~~W~~~ 284 (289)
.+|++++-.- .+.||. -..+.|++.....+.+|++.-+++-
T Consensus 207 ~p~~~lvVNvGD~L~~~Tng~-~~S~~HRVv~~~~~~R~Si~~F~~p 252 (303)
T PLN02403 207 SKNNTIFVNTGDQLEVLSNGR-YKSTLHRVMADKNGSRLSIATFYNP 252 (303)
T ss_pred CCCCEEEEEehHHHHHHhCCe-eecccceeecCCCCCEEEEEEEEcC
Confidence 9964443321 122332 3578899986666789999877654
No 37
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=76.16 E-value=14 Score=34.90 Aligned_cols=88 Identities=15% Similarity=0.173 Sum_probs=54.3
Q ss_pred cceeeecCCCC------ccccCcccCCCCCCCCCCCceEEEEEEecCCCCCCcceeccCCCCCCCCCCCCcccccceEEe
Q 022995 168 AFNILRYKIGQ------KYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVK 241 (289)
Q Consensus 168 ~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv~eGGeT~Fp~~~~~~~~~~~~~~~~~~~~V~ 241 (289)
.+++.+|.+-. -..+|+|.. .+|+| +.|...||==+... ...+.|+
T Consensus 159 ~lRl~~YPp~~~~~~~~G~~~HTD~g------------~lTlL--~qd~~v~GLQV~~~--------------g~Wi~V~ 210 (321)
T PLN02299 159 GTKVSNYPPCPKPDLVKGLRAHTDAG------------GIILL--FQDDKVSGLQLLKD--------------GEWVDVP 210 (321)
T ss_pred eeeeEecCCCCCcccccCccCccCCC------------eEEEE--EecCCCCCcCcccC--------------CeEEECC
Confidence 37899997521 255788763 57777 44433445333321 1468899
Q ss_pred cccccEEEEee----cCCCCCCCCCCcccccCcccceEEEEEecccc
Q 022995 242 PRQGDGLLFYS----LLPNGTIDPTSIHGSCPVVKGEKWVATKWIRD 284 (289)
Q Consensus 242 P~~G~allF~n----~~~~g~~D~~~~H~g~PV~~G~K~v~~~W~~~ 284 (289)
|.+|.+||--- .+.||.. ..+.|++.....+++|++.-+++-
T Consensus 211 p~pg~lvVNiGD~l~~~Tng~~-kS~~HRVv~~~~~~R~Si~~F~~p 256 (321)
T PLN02299 211 PMRHSIVVNLGDQLEVITNGKY-KSVMHRVVAQTDGNRMSIASFYNP 256 (321)
T ss_pred CCCCeEEEEeCHHHHHHhCCce-ecccceeecCCCCCEEEEEEEecC
Confidence 99998887421 1233333 578999975556789998877653
No 38
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=75.10 E-value=19 Score=34.55 Aligned_cols=89 Identities=16% Similarity=0.131 Sum_probs=53.2
Q ss_pred cceeeecCCCC------ccccCcccCCCCCCCCCCCceEEEEEEecCCCCCCcceeccCCCCCCCCCCCCcccccceEEe
Q 022995 168 AFNILRYKIGQ------KYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVK 241 (289)
Q Consensus 168 ~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv~eGGeT~Fp~~~~~~~~~~~~~~~~~~~~V~ 241 (289)
.+++.+|.+-. ...+|.|+. .+|+|+- ++ .||==+.... + ...+.|+
T Consensus 196 ~lrl~~YP~~~~~~~~~G~~~HTD~g------------~lTlL~Q-d~--v~GLQV~~~~-~-----------~~Wi~Vp 248 (358)
T PLN02515 196 KVVVNYYPKCPQPDLTLGLKRHTDPG------------TITLLLQ-DQ--VGGLQATRDG-G-----------KTWITVQ 248 (358)
T ss_pred eEEEeecCCCCChhhccCCCCCCCCC------------eEEEEec-CC--CCceEEEECC-C-----------CeEEECC
Confidence 46788887521 255777763 5787744 33 2443232211 0 0368899
Q ss_pred cccccEEEEe----ecCCCCCCCCCCcccccCcccceEEEEEecccc
Q 022995 242 PRQGDGLLFY----SLLPNGTIDPTSIHGSCPVVKGEKWVATKWIRD 284 (289)
Q Consensus 242 P~~G~allF~----n~~~~g~~D~~~~H~g~PV~~G~K~v~~~W~~~ 284 (289)
|..|..||=- ..+.||. -..+.|.+.....+++|++.-+++-
T Consensus 249 p~pgalVVNiGD~L~~~TNG~-~kSt~HRVv~~~~~~R~Si~~F~~P 294 (358)
T PLN02515 249 PVEGAFVVNLGDHGHYLSNGR-FKNADHQAVVNSNCSRLSIATFQNP 294 (358)
T ss_pred CCCCeEEEEccHHHHHHhCCe-eeeecceEECCCCCCEEEEEEEecC
Confidence 9999877742 1122333 3688999865555679998877654
No 39
>PLN02997 flavonol synthase
Probab=74.85 E-value=16 Score=34.51 Aligned_cols=88 Identities=13% Similarity=0.068 Sum_probs=54.3
Q ss_pred cceeeecCCCC------ccccCcccCCCCCCCCCCCceEEEEEEecCCCCCCcceeccCCCCCCCCCCCCcccccceEEe
Q 022995 168 AFNILRYKIGQ------KYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVK 241 (289)
Q Consensus 168 ~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv~eGGeT~Fp~~~~~~~~~~~~~~~~~~~~V~ 241 (289)
-+++.+|.+-. ...+|.|.. .+|+|+. ++ .||==+... ...+.|+
T Consensus 184 ~lRl~~YP~~~~~~~~~g~~~HTD~g------------~lTlL~Q-d~--v~GLQV~~~--------------g~Wi~V~ 234 (325)
T PLN02997 184 VLRVNFYPPTQDTELVIGAAAHSDMG------------AIALLIP-NE--VPGLQAFKD--------------EQWLDLN 234 (325)
T ss_pred eeeeecCCCCCCcccccCccCccCCC------------ceEEEec-CC--CCCEEEeEC--------------CcEEECC
Confidence 47888997631 256777763 5788843 33 455333321 1468999
Q ss_pred cccccEEEEee----cCCCCCCCCCCcccccCcccceEEEEEeccccc
Q 022995 242 PRQGDGLLFYS----LLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQ 285 (289)
Q Consensus 242 P~~G~allF~n----~~~~g~~D~~~~H~g~PV~~G~K~v~~~W~~~~ 285 (289)
|.+|..||--- .+.||. -..+.|.+..-....+|.+.-+++-.
T Consensus 235 p~pgalvVNiGD~Le~~TNG~-~kSt~HRVv~~~~~~R~Si~fF~~P~ 281 (325)
T PLN02997 235 YINSAVVVIIGDQLMRMTNGR-FKNVLHRAKTDKERLRISWPVFVAPR 281 (325)
T ss_pred CCCCeEEEEechHHHHHhCCc-cccccceeeCCCCCCEEEEEEEecCC
Confidence 99998777431 122333 35789999754455799887776543
No 40
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=74.78 E-value=21 Score=34.08 Aligned_cols=87 Identities=18% Similarity=0.199 Sum_probs=53.8
Q ss_pred cceeeecCCCC------ccccCcccCCCCCCCCCCCceEEEEEEecCCCCCCcceeccCCCCCCCCCCCCcccccceEEe
Q 022995 168 AFNILRYKIGQ------KYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVK 241 (289)
Q Consensus 168 ~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv~eGGeT~Fp~~~~~~~~~~~~~~~~~~~~V~ 241 (289)
.+++.+|.+-. .-.+|+|.. .+|+|+- | ..||==++.. + ..+.|+
T Consensus 198 ~lrl~~YPp~~~~~~~~G~~~HtD~g------------~lTlL~Q--d-~v~GLQV~~~--g------------~Wi~V~ 248 (348)
T PLN02912 198 HMAINYYPPCPQPELTYGLPGHKDAN------------LITVLLQ--D-EVSGLQVFKD--G------------KWIAVN 248 (348)
T ss_pred eeeeeecCCCCChhhcCCcCCCcCCC------------ceEEEEE--C-CCCceEEEEC--C------------cEEECC
Confidence 57888997621 245777763 5787744 4 2355444421 1 478999
Q ss_pred cccccEEEEe----ecCCCCCCCCCCcccccCcccceEEEEEecccc
Q 022995 242 PRQGDGLLFY----SLLPNGTIDPTSIHGSCPVVKGEKWVATKWIRD 284 (289)
Q Consensus 242 P~~G~allF~----n~~~~g~~D~~~~H~g~PV~~G~K~v~~~W~~~ 284 (289)
|.+|..||-- ..+.||. -..+.|++.....+++|++.-+++-
T Consensus 249 p~pgalvVNiGD~L~~~TNG~-~kSt~HRVv~~~~~~R~Sia~F~~p 294 (348)
T PLN02912 249 PIPNTFIVNLGDQMQVISNDK-YKSVLHRAVVNTDKERISIPTFYCP 294 (348)
T ss_pred CcCCeEEEEcCHHHHHHhCCE-EEcccccccCCCCCCEEEEEEEecC
Confidence 9999887742 1122332 2588999864445679998877654
No 41
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=74.61 E-value=26 Score=33.55 Aligned_cols=87 Identities=14% Similarity=0.099 Sum_probs=52.8
Q ss_pred cceeeecCCC----Cc--cccCcccCCCCCCCCCCCceEEEEEEecCCC-CCCcceeccCCCCCCCCCCCCcccccceEE
Q 022995 168 AFNILRYKIG----QK--YNSHYDAFDPQEYGPQKSQRVASFLVYLTDL-EEGGETMFPFENGMNADGSYDYQKCIGLKV 240 (289)
Q Consensus 168 ~lqv~rY~~G----~~--y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv-~eGGeT~Fp~~~~~~~~~~~~~~~~~~~~V 240 (289)
.+++.+|.+- .. -.+|+|.. .+|+|+ .|. ..||==+... ...+.|
T Consensus 212 ~lR~~~YP~~~~~~~~~g~~~HtD~g------------~lTlL~--qd~~~v~GLQV~~~--------------g~Wi~V 263 (361)
T PLN02758 212 AVRMNYYPPCSRPDLVLGLSPHSDGS------------ALTVLQ--QGKGSCVGLQILKD--------------NTWVPV 263 (361)
T ss_pred eeeeecCCCCCCcccccCccCccCCc------------eeEEEE--eCCCCCCCeeeeeC--------------CEEEeC
Confidence 4778888652 11 35677763 578775 342 4455333321 146889
Q ss_pred ecccccEEEEee----cCCCCCCCCCCcccccCcccceEEEEEeccc
Q 022995 241 KPRQGDGLLFYS----LLPNGTIDPTSIHGSCPVVKGEKWVATKWIR 283 (289)
Q Consensus 241 ~P~~G~allF~n----~~~~g~~D~~~~H~g~PV~~G~K~v~~~W~~ 283 (289)
+|.+|..||--- .+.||. -..+.|++......++|++.-+++
T Consensus 264 ~p~pgalVVNiGD~L~~~SNG~-~kS~~HRVv~~~~~~R~Sia~F~~ 309 (361)
T PLN02758 264 HPVPNALVINIGDTLEVLTNGK-YKSVEHRAVTNKEKDRLSIVTFYA 309 (361)
T ss_pred CCCCCeEEEEccchhhhhcCCe-eecccceeecCCCCCEEEEEEEec
Confidence 999998887531 122332 258899997554557898877765
No 42
>PLN02216 protein SRG1
Probab=74.45 E-value=21 Score=34.15 Aligned_cols=88 Identities=16% Similarity=0.140 Sum_probs=53.6
Q ss_pred cceeeecCCCC------ccccCcccCCCCCCCCCCCceEEEEEEecCCCCCCcceeccCCCCCCCCCCCCcccccceEEe
Q 022995 168 AFNILRYKIGQ------KYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVK 241 (289)
Q Consensus 168 ~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv~eGGeT~Fp~~~~~~~~~~~~~~~~~~~~V~ 241 (289)
.+++.+|.+-. -..+|.|.. .+|+|+--++ .||==+... ...+.|+
T Consensus 211 ~lRl~~YPp~p~~~~~~G~~~HtD~g------------~lTlL~q~~~--v~GLQV~~~--------------g~Wi~V~ 262 (357)
T PLN02216 211 SIRMNYYPPCPQPDQVIGLTPHSDAV------------GLTILLQVNE--VEGLQIKKD--------------GKWVSVK 262 (357)
T ss_pred eeEEeecCCCCCcccccCccCcccCc------------eEEEEEecCC--CCceeEEEC--------------CEEEECC
Confidence 57888896521 245676653 5777754444 355333321 1478999
Q ss_pred cccccEEEEee----cCCCCCCCCCCcccccCcccceEEEEEecccc
Q 022995 242 PRQGDGLLFYS----LLPNGTIDPTSIHGSCPVVKGEKWVATKWIRD 284 (289)
Q Consensus 242 P~~G~allF~n----~~~~g~~D~~~~H~g~PV~~G~K~v~~~W~~~ 284 (289)
|.+|..||--- .+.||. -..+.|++......+++++.-++.-
T Consensus 263 p~pgalvVNiGD~L~~~TNG~-~kS~~HRVv~~~~~~R~Si~~F~~P 308 (357)
T PLN02216 263 PLPNALVVNVGDILEIITNGT-YRSIEHRGVVNSEKERLSVATFHNT 308 (357)
T ss_pred CCCCeEEEEcchhhHhhcCCe-eeccCceeecCCCCCEEEEEEEecC
Confidence 99998887420 122332 3578999865445678988777643
No 43
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=73.52 E-value=32 Score=32.52 Aligned_cols=105 Identities=18% Similarity=0.231 Sum_probs=60.7
Q ss_pred HHHHHHHHcCCCCc--------ccccceeeecCCCC------ccccCcccCCCCCCCCCCCceEEEEEEecCCCCCCcce
Q 022995 151 IEEKIAKVTMLPRI--------NGEAFNILRYKIGQ------KYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGET 216 (289)
Q Consensus 151 I~~Ri~~~~g~p~~--------~~E~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv~eGGeT 216 (289)
|.+-++..+|++.+ ....+++.+|.+-. -..+|+|.. .+|+|+- |...||==
T Consensus 166 ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HTD~g------------~lTlL~q--d~~v~GLQ 231 (337)
T PLN02639 166 LQEAISESLGLEKDYIKNVLGEQGQHMAVNYYPPCPEPELTYGLPAHTDPN------------ALTILLQ--DQQVAGLQ 231 (337)
T ss_pred HHHHHHHHcCCCHHHHHHHhCCCccEEEEEcCCCCCCcccccCCCCCcCCC------------ceEEEEe--cCCcCceE
Confidence 33334445676632 22357888887631 145677753 5777743 43344533
Q ss_pred eccCCCCCCCCCCCCcccccceEEecccccEEEEee----cCCCCCCCCCCcccccCcccceEEEEEecccc
Q 022995 217 MFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYS----LLPNGTIDPTSIHGSCPVVKGEKWVATKWIRD 284 (289)
Q Consensus 217 ~Fp~~~~~~~~~~~~~~~~~~~~V~P~~G~allF~n----~~~~g~~D~~~~H~g~PV~~G~K~v~~~W~~~ 284 (289)
++.. + ..+.|+|.+|.+||--- .+.||. -..+.|.+-..-..++|++.-+++-
T Consensus 232 V~~~--g------------~Wi~V~p~pg~lVVNiGD~L~~~TNG~-~kSt~HRVv~~~~~~R~Sia~F~~p 288 (337)
T PLN02639 232 VLKD--G------------KWVAVNPHPGAFVINIGDQLQALSNGR-YKSVWHRAVVNTDKERMSVASFLCP 288 (337)
T ss_pred eecC--C------------eEEeccCCCCeEEEechhHHHHHhCCe-eeccCcccccCCCCCEEEEEEEecC
Confidence 3321 1 47899999998887421 112332 2578999854334679998877653
No 44
>PLN02904 oxidoreductase
Probab=73.30 E-value=31 Score=32.98 Aligned_cols=86 Identities=13% Similarity=0.065 Sum_probs=52.6
Q ss_pred cceeeecCCCC------ccccCcccCCCCCCCCCCCceEEEEEEecCCCCCCcceeccCCCCCCCCCCCCcccccceEEe
Q 022995 168 AFNILRYKIGQ------KYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVK 241 (289)
Q Consensus 168 ~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv~eGGeT~Fp~~~~~~~~~~~~~~~~~~~~V~ 241 (289)
.+++.+|.+.. --.+|.|+. .+|+|+ .|+ ||==+... . ...+.|+
T Consensus 209 ~lrl~~YPp~p~~~~~~g~~~HtD~g------------~lTlL~--qd~--~GLQV~~~-~------------g~Wi~V~ 259 (357)
T PLN02904 209 VMAVNCYPACPEPEIALGMPPHSDFG------------SLTILL--QSS--QGLQIMDC-N------------KNWVCVP 259 (357)
T ss_pred EEEeeecCCCCCcccccCCcCccCCC------------ceEEEe--cCC--CeeeEEeC-C------------CCEEECC
Confidence 47888997631 244677763 588885 453 44323221 1 1468999
Q ss_pred cccccEEEEee----cCCCCCCCCCCcccccCcccceEEEEEeccc
Q 022995 242 PRQGDGLLFYS----LLPNGTIDPTSIHGSCPVVKGEKWVATKWIR 283 (289)
Q Consensus 242 P~~G~allF~n----~~~~g~~D~~~~H~g~PV~~G~K~v~~~W~~ 283 (289)
|.+|..||--- .+.||. -..+.|++......++|++.-++.
T Consensus 260 p~pgalVVNiGD~Le~~TNG~-~kSt~HRVv~~~~~~R~Si~~F~~ 304 (357)
T PLN02904 260 YIEGALIVQLGDQVEVMSNGI-YKSVVHRVTVNKDYKRLSFASLHS 304 (357)
T ss_pred CCCCeEEEEccHHHHHHhCCe-eeccCCcccCCCCCCEEEEEEeec
Confidence 99998887421 012222 258899996444567999887764
No 45
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=73.16 E-value=22 Score=33.04 Aligned_cols=109 Identities=17% Similarity=0.085 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHcCC-CCcc----cccceeeecCCC-----C-ccccCcccCCCCCCCCCCCceEEEEEEecCCCCCCcce
Q 022995 148 LDLIEEKIAKVTML-PRIN----GEAFNILRYKIG-----Q-KYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGET 216 (289)
Q Consensus 148 ~~~I~~Ri~~~~g~-p~~~----~E~lqv~rY~~G-----~-~y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv~eGGeT 216 (289)
..+|.+-++..+|+ +.+. ...+++++|.+- + .-.+|.|.. .+|+|.. |...||==
T Consensus 125 ~~~ll~~la~~Lgl~~~~~f~~~~~~lr~~~YP~~p~~~~~~g~~~HtD~g------------~lTlL~q--d~~~~GLq 190 (300)
T PLN02365 125 AMDLARKLAESLGLVEGDFFQGWPSQFRINKYNFTPETVGSSGVQIHTDSG------------FLTILQD--DENVGGLE 190 (300)
T ss_pred HHHHHHHHHHHcCCCChHHHhhcccceeeeecCCCCCccccccccCccCCC------------ceEEEec--CCCcCceE
Confidence 33444445555677 5432 235889999442 1 244677652 4787744 43345533
Q ss_pred eccCCCCCCCCCCCCcccccceEEecccccEEEEe----ecCCCCCCCCCCcccccCcccceEEEEEeccc
Q 022995 217 MFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFY----SLLPNGTIDPTSIHGSCPVVKGEKWVATKWIR 283 (289)
Q Consensus 217 ~Fp~~~~~~~~~~~~~~~~~~~~V~P~~G~allF~----n~~~~g~~D~~~~H~g~PV~~G~K~v~~~W~~ 283 (289)
+..... ...+.|.|.+|..||-- ..+.||. -..+.|.+......+||++.-++.
T Consensus 191 V~~~~~------------g~Wi~V~p~pga~vVNiGD~l~~~TNG~-~~St~HRVv~~~~~~R~Si~~F~~ 248 (300)
T PLN02365 191 VMDPSS------------GEFVPVDPLPGTLLVNLGDVATAWSNGR-LCNVKHRVQCKEATMRISIASFLL 248 (300)
T ss_pred EEECCC------------CeEEecCCCCCeEEEEhhHHHHHHhCCc-eecccceeEcCCCCCEEEEEEEec
Confidence 332101 14689999999888742 0122332 358899997655557999877754
No 46
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=72.66 E-value=31 Score=32.54 Aligned_cols=87 Identities=20% Similarity=0.235 Sum_probs=56.9
Q ss_pred cceeeecCCCC------ccccCcccCCCCCCCCCCCceEEEEEEecCCCCCCcceeccCCCCCCCCCCCCcccccceEEe
Q 022995 168 AFNILRYKIGQ------KYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVK 241 (289)
Q Consensus 168 ~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv~eGGeT~Fp~~~~~~~~~~~~~~~~~~~~V~ 241 (289)
-+++.+|.+.- -..+|.|.. .+|+| |.|...||-=++.. . ...+.|+
T Consensus 177 ~~r~n~Yp~cp~pe~~lGl~~HtD~~------------~lTiL--lqd~~V~GLQv~~~-d------------g~Wi~V~ 229 (322)
T KOG0143|consen 177 VMRLNYYPPCPEPELTLGLGAHTDKS------------FLTIL--LQDDDVGGLQVFTK-D------------GKWIDVP 229 (322)
T ss_pred EEEEeecCCCcCccccccccCccCcC------------ceEEE--EccCCcCceEEEec-C------------CeEEECC
Confidence 67888898742 267887763 36666 55545577666641 1 1579999
Q ss_pred cccccEEEEe----ecCCCCCCCCCCcccccCcccceEEEEEecc
Q 022995 242 PRQGDGLLFY----SLLPNGTIDPTSIHGSCPVVKGEKWVATKWI 282 (289)
Q Consensus 242 P~~G~allF~----n~~~~g~~D~~~~H~g~PV~~G~K~v~~~W~ 282 (289)
|.+|..|+=- ....|| .....+|++..-.+.+|+++-.++
T Consensus 230 P~p~a~vVNiGD~l~~lSNG-~ykSv~HRV~~n~~~~R~Sia~F~ 273 (322)
T KOG0143|consen 230 PIPGAFVVNIGDMLQILSNG-RYKSVLHRVVVNGEKERISVAFFV 273 (322)
T ss_pred CCCCCEEEEcccHHhHhhCC-cccceEEEEEeCCCCceEEEEEEe
Confidence 9997666531 012334 346889999988888788876554
No 47
>PLN02276 gibberellin 20-oxidase
Probab=72.47 E-value=36 Score=32.59 Aligned_cols=87 Identities=21% Similarity=0.211 Sum_probs=54.2
Q ss_pred ccceeeecCCCC------ccccCcccCCCCCCCCCCCceEEEEEEecCCCCCCcceeccCCCCCCCCCCCCcccccceEE
Q 022995 167 EAFNILRYKIGQ------KYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKV 240 (289)
Q Consensus 167 E~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv~eGGeT~Fp~~~~~~~~~~~~~~~~~~~~V 240 (289)
.-+++.+|.+.. --.+|+|.. .+|+|+- | ..||==+... ...+.|
T Consensus 206 ~~lrl~~YP~~~~~~~~~g~~~HTD~g------------~lTlL~Q--d-~v~GLQV~~~--------------g~Wi~V 256 (361)
T PLN02276 206 SIMRCNYYPPCQEPELTLGTGPHCDPT------------SLTILHQ--D-QVGGLQVFVD--------------NKWRSV 256 (361)
T ss_pred ceeeeEeCCCCCCcccccCCccccCCc------------eeEEEEe--c-CCCceEEEEC--------------CEEEEc
Confidence 357888886531 244677653 5787754 4 3455444421 157899
Q ss_pred ecccccEEEEee----cCCCCCCCCCCcccccCcccceEEEEEeccc
Q 022995 241 KPRQGDGLLFYS----LLPNGTIDPTSIHGSCPVVKGEKWVATKWIR 283 (289)
Q Consensus 241 ~P~~G~allF~n----~~~~g~~D~~~~H~g~PV~~G~K~v~~~W~~ 283 (289)
+|..|.+||--- .+.||. -..++|.+..-....+|++.-+++
T Consensus 257 ~p~pgalVVNiGD~L~~~TNG~-~kSt~HRVv~~~~~~R~Sia~F~~ 302 (361)
T PLN02276 257 RPRPGALVVNIGDTFMALSNGR-YKSCLHRAVVNSERERRSLAFFLC 302 (361)
T ss_pred CCCCCeEEEEcHHHHHHHhCCc-cccccceeecCCCCCEEEEEEEec
Confidence 999999888531 122332 357899986444567999887765
No 48
>PLN02947 oxidoreductase
Probab=72.13 E-value=35 Score=32.93 Aligned_cols=86 Identities=14% Similarity=0.137 Sum_probs=52.9
Q ss_pred cceeeecCCCC------ccccCcccCCCCCCCCCCCceEEEEEEecCCCCCCcceeccCCCCCCCCCCCCcccccceEEe
Q 022995 168 AFNILRYKIGQ------KYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVK 241 (289)
Q Consensus 168 ~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv~eGGeT~Fp~~~~~~~~~~~~~~~~~~~~V~ 241 (289)
.+++.+|.+.. ...+|+|.. .+|+|+- ++ .||==+... + ..+.|+
T Consensus 226 ~lrln~YPp~p~~~~~~G~~~HTD~g------------~lTlL~Q-d~--v~GLQV~~~--g------------~Wi~V~ 276 (374)
T PLN02947 226 MMVVNCYPACPEPELTLGMPPHSDYG------------FLTLLLQ-DE--VEGLQIMHA--G------------RWVTVE 276 (374)
T ss_pred eeeeecCCCCCCcccccCCCCccCCC------------ceEEEEe-cC--CCCeeEeEC--C------------EEEeCC
Confidence 46777887632 245677753 5888865 33 355434431 1 478899
Q ss_pred cccccEEEEe----ecCCCCCCCCCCcccccCcccceEEEEEeccc
Q 022995 242 PRQGDGLLFY----SLLPNGTIDPTSIHGSCPVVKGEKWVATKWIR 283 (289)
Q Consensus 242 P~~G~allF~----n~~~~g~~D~~~~H~g~PV~~G~K~v~~~W~~ 283 (289)
|.+|..||-- ..+.||.. ..+.|++.......+|.+..++.
T Consensus 277 p~pga~VVNvGD~Lq~~SNG~~-kS~~HRVv~~~~~~R~Sia~F~~ 321 (374)
T PLN02947 277 PIPGSFVVNVGDHLEIFSNGRY-KSVLHRVRVNSTKPRISVASLHS 321 (374)
T ss_pred CCCCeEEEEeCceeeeeeCCEE-eccccccccCCCCCEEEEEEEec
Confidence 9998877742 11223332 58899996544567898877764
No 49
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=72.10 E-value=37 Score=32.25 Aligned_cols=91 Identities=14% Similarity=0.070 Sum_probs=54.8
Q ss_pred ccceeeecCCCC------ccccCcccCCCCCCCCCCCceEEEEEEecCCCCCCcceeccCCCCCCCCCCCCcccccceEE
Q 022995 167 EAFNILRYKIGQ------KYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKV 240 (289)
Q Consensus 167 E~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv~eGGeT~Fp~~~~~~~~~~~~~~~~~~~~V 240 (289)
..+++.+|.+-. ...+|+|+. .+|+|+- | ..||==++.... ...+.|
T Consensus 193 ~~lR~~~YPp~~~~~~~~g~~~HtD~g------------~lTlL~q--d-~v~GLQV~~~~~------------g~Wi~V 245 (345)
T PLN02750 193 SFARFNHYPPCPAPHLALGVGRHKDGG------------ALTVLAQ--D-DVGGLQISRRSD------------GEWIPV 245 (345)
T ss_pred eEEEEEecCCCCCcccccCcCCCCCCC------------eEEEEec--C-CCCceEEeecCC------------CeEEEc
Confidence 358899997631 255777763 5777633 3 235533332111 146899
Q ss_pred ecccccEEEEe----ecCCCCCCCCCCcccccCcccceEEEEEeccccc
Q 022995 241 KPRQGDGLLFY----SLLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQ 285 (289)
Q Consensus 241 ~P~~G~allF~----n~~~~g~~D~~~~H~g~PV~~G~K~v~~~W~~~~ 285 (289)
+|.+|..||=- ..+.||. -..++|++......++|++.-+++-.
T Consensus 246 ~p~pg~~vVNiGD~L~~~Tng~-~~St~HRVv~~~~~~R~Si~~F~~P~ 293 (345)
T PLN02750 246 KPIPDAFIINIGNCMQVWTNDL-YWSAEHRVVVNSQKERFSIPFFFFPS 293 (345)
T ss_pred cCCCCeEEEEhHHHHHHHhCCe-eecccceeccCCCCCEEEEEEeecCC
Confidence 99999887731 0122332 25789999755556799988776543
No 50
>PF10014 2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018724 Members of this family of hypothetical bacterial proteins have no known function. Some are described as putative biofilm formation or putative agglutination proteins. ; PDB: 3PL0_B.
Probab=70.91 E-value=4.6 Score=35.36 Aligned_cols=56 Identities=23% Similarity=0.212 Sum_probs=33.8
Q ss_pred ceEEEEEEecCCCCCCcceeccCCCCCCCCCCCCcccccceEEecccccEEEEeecCCCCCCCCCCcccccCccc
Q 022995 198 QRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVK 272 (289)
Q Consensus 198 ~R~~T~liYLNdv~eGGeT~Fp~~~~~~~~~~~~~~~~~~~~V~P~~G~allF~n~~~~g~~D~~~~H~g~PV~~ 272 (289)
..+++.+|--+++ +||+|........ ......--..|+.+++. |...+|.+.||..
T Consensus 124 d~v~~~li~r~Ni-~GG~s~i~~~~~~----------~~~~~~l~~p~d~l~~~--------D~~~~H~vtpI~~ 179 (195)
T PF10014_consen 124 DFVFIHLINRHNI-EGGESQIYDNDKE----------ILFFFTLLEPGDTLLVD--------DRRVWHYVTPIRP 179 (195)
T ss_dssp SEEEEEEEEEESE-EE--EEEEETTSS----------EEEEE---STTEEEEEE--------TTTEEEEE--EEE
T ss_pred CEEEEEEEcCCCc-cCceEEEEeCCCC----------cceEEEecCCCCEEEEe--------CCcceECCCceec
Confidence 4577777777677 8998887443211 13344555678888885 6899999999975
No 51
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=70.38 E-value=38 Score=32.42 Aligned_cols=87 Identities=17% Similarity=0.240 Sum_probs=53.6
Q ss_pred cceeeecCCCC------ccccCcccCCCCCCCCCCCceEEEEEEecCCCCCCcceeccCCCCCCCCCCCCcccccceEEe
Q 022995 168 AFNILRYKIGQ------KYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVK 241 (289)
Q Consensus 168 ~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv~eGGeT~Fp~~~~~~~~~~~~~~~~~~~~V~ 241 (289)
.+++.+|.+.. .-.+|.|.. .+|+|+. ++ .||==+.... ...+.|+
T Consensus 211 ~lRl~~YPp~p~~~~~~G~~~HtD~g------------~lTiL~Q-d~--v~GLQV~~~~-------------~~Wi~V~ 262 (358)
T PLN02254 211 ALQLNSYPVCPDPDRAMGLAPHTDSS------------LLTILYQ-SN--TSGLQVFREG-------------VGWVTVP 262 (358)
T ss_pred eEEEecCCCCCCcccccCcCCccCCC------------cEEEEec-CC--CCCceEECCC-------------CEEEEcc
Confidence 46788897631 255777753 5888865 33 3554444321 0368999
Q ss_pred cccccEEEEee----cCCCCCCCCCCcccccCcccceEEEEEeccc
Q 022995 242 PRQGDGLLFYS----LLPNGTIDPTSIHGSCPVVKGEKWVATKWIR 283 (289)
Q Consensus 242 P~~G~allF~n----~~~~g~~D~~~~H~g~PV~~G~K~v~~~W~~ 283 (289)
|.+|..||--- .+.||. -..+.|++..-...+||++.-+++
T Consensus 263 p~pgalVVNiGD~lq~~SNg~-~kS~~HRVv~~~~~~R~Sia~F~~ 307 (358)
T PLN02254 263 PVPGSLVVNVGDLLHILSNGR-FPSVLHRAVVNKTRHRISVAYFYG 307 (358)
T ss_pred cCCCCEEEEhHHHHHHHhCCe-eccccceeecCCCCCEEEEEEEec
Confidence 99999888421 122332 358899995443457888877664
No 52
>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=66.98 E-value=19 Score=33.61 Aligned_cols=86 Identities=19% Similarity=0.186 Sum_probs=54.8
Q ss_pred ccccCcccCCCCCCCCCCCceEEEEEEecCCCC-CCcceec-cCCCCCCC-CCCC---CcccccceEEecccccEEEEee
Q 022995 179 KYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLE-EGGETMF-PFENGMNA-DGSY---DYQKCIGLKVKPRQGDGLLFYS 252 (289)
Q Consensus 179 ~y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv~-eGGeT~F-p~~~~~~~-~~~~---~~~~~~~~~V~P~~G~allF~n 252 (289)
+=.+|.|+.... ....-+..+.+=|-|.. +-|.|.+ |..-.... -++. .+-+...+-|.-.+|++|+|.
T Consensus 132 ~t~~HqD~~~~~----~~~~~lV~~wiAl~d~~~dnGat~vvPgSH~~~~~~~r~d~~~y~~~~~~pv~lekGDallF~- 206 (299)
T COG5285 132 ATRWHQDYPLVS----PGYPALVNAWIALCDFTEDNGATLVVPGSHKWDVIPERPDHETYLERNAVPVELEKGDALLFN- 206 (299)
T ss_pred cccccccccccc----CCccceEEEEEeccccccccCceEEEecccccccCCCCCCccchhhhcceeeeecCCCEEEEc-
Confidence 457899964432 23445777888898874 5677766 54322210 0111 233445788888999999995
Q ss_pred cCCCCCCCCCCcccccCcccceEEE
Q 022995 253 LLPNGTIDPTSIHGSCPVVKGEKWV 277 (289)
Q Consensus 253 ~~~~g~~D~~~~H~g~PV~~G~K~v 277 (289)
..++|++---+.+-+-+
T Consensus 207 --------~~L~HaA~aNrT~~~R~ 223 (299)
T COG5285 207 --------GSLWHAAGANRTSADRV 223 (299)
T ss_pred --------chhhhhhhcCCCCcccc
Confidence 58999988877774433
No 53
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=66.91 E-value=58 Score=27.82 Aligned_cols=86 Identities=17% Similarity=0.194 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHcCCCCcccccceeeecCCCCccccCcccCCCCCCCCCCCceEEEEEEecCCCCCCcceeccCCCCCC
Q 022995 146 GTLDLIEEKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMN 225 (289)
Q Consensus 146 ~i~~~I~~Ri~~~~g~p~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv~eGGeT~Fp~~~~~~ 225 (289)
+.+..|.++|++..+++....+..-|..|.+|+.-.+|.|... .+ ...-++++-+ |-...|-.... .
T Consensus 74 ~~L~~L~~~v~~~~g~~~~~~n~~LvN~Y~~Gd~mg~H~D~~e---~~--~~~pI~SvSL-------G~~r~F~~~~~-~ 140 (169)
T TIGR00568 74 QDLGDLCERVATAAGFPDFQPDACLVNRYAPGATLSLHQDRDE---PD--LRAPLLSVSL-------GLPAIFLIGGL-K 140 (169)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCEEEEEeecCCCcccccccccc---cc--CCCCEEEEeC-------CCCEEEEecCC-c
Confidence 5678888899988887655566778899999999999999522 11 1233444432 33344433111 0
Q ss_pred CCCCCCcccccceEEecccccEEEEe
Q 022995 226 ADGSYDYQKCIGLKVKPRQGDGLLFY 251 (289)
Q Consensus 226 ~~~~~~~~~~~~~~V~P~~G~allF~ 251 (289)
. +.....+.-..|++|++-
T Consensus 141 ~-------~~~~~~l~L~sGsllvM~ 159 (169)
T TIGR00568 141 R-------NDPPKRLRLHSGDVVIMG 159 (169)
T ss_pred C-------CCceEEEEeCCCCEEEEC
Confidence 0 113578889999999994
No 54
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=64.58 E-value=69 Score=30.39 Aligned_cols=87 Identities=15% Similarity=0.208 Sum_probs=54.4
Q ss_pred cceeeecCCCC------c--cccCcccCCCCCCCCCCCceEEEEEEecCCCCCCcceeccCCCCCCCCCCCCcccccceE
Q 022995 168 AFNILRYKIGQ------K--YNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLK 239 (289)
Q Consensus 168 ~lqv~rY~~G~------~--y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv~eGGeT~Fp~~~~~~~~~~~~~~~~~~~~ 239 (289)
.+++++|.+.. . -.+|+|.. .+|+|+- ++ .||==+.... ...+.
T Consensus 179 ~lRl~~YP~~~~~~~~~~~g~~~HTD~g------------~lTlL~Q-d~--v~GLQV~~~~-------------g~Wi~ 230 (335)
T PLN02156 179 CLRMNHYPEKEETPEKVEIGFGEHTDPQ------------LISLLRS-ND--TAGLQICVKD-------------GTWVD 230 (335)
T ss_pred eEeEEeCCCCCCCccccccCCCCccCCC------------ceEEEEe-CC--CCceEEEeCC-------------CCEEE
Confidence 58899997631 1 34577753 5787754 33 3553333211 14789
Q ss_pred EecccccEEEEe----ecCCCCCCCCCCcccccCcccceEEEEEeccc
Q 022995 240 VKPRQGDGLLFY----SLLPNGTIDPTSIHGSCPVVKGEKWVATKWIR 283 (289)
Q Consensus 240 V~P~~G~allF~----n~~~~g~~D~~~~H~g~PV~~G~K~v~~~W~~ 283 (289)
|.|..|..||-- ..+.||. -..+.|++......++|++.-+++
T Consensus 231 Vpp~pga~VVNiGD~l~~wTNg~-~kSt~HRVv~~~~~~R~SiafF~~ 277 (335)
T PLN02156 231 VPPDHSSFFVLVGDTLQVMTNGR-FKSVKHRVVTNTKRSRISMIYFAG 277 (335)
T ss_pred ccCCCCcEEEEhHHHHHHHhCCe-eeccceeeecCCCCCEEEEEEeec
Confidence 999999888742 1122333 268899998666668999887765
No 55
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases. The Escherichia coli tauD gene is required for the utilization of taurine (2-aminoethanesulphonic acid) as a sulphur source and is expressed only under conditions of sulphate starvation. TauD is an alpha-ketoglutarate-dependent dioxygenase catalyzing the oxygenolytic release of sulphite from taurine []. The 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase from Burkholderia sp. (strain RASC) also belongs to this family []. TfdA from Ralstonia eutropha (Alcaligenes eutrophus) is a 2,4-D monooxygenase [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3SWT_B 3R1J_A 1GVG_A 1DRT_A 1DS1_A 1DS0_A 1DRY_A 3V15_A 3PVJ_D 3V17_A ....
Probab=64.42 E-value=6.8 Score=34.54 Aligned_cols=38 Identities=18% Similarity=0.430 Sum_probs=29.7
Q ss_pred cceEEecccccEEEEeecCCCCCCCCCCcccccCc--ccceEEEEEec
Q 022995 236 IGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPV--VKGEKWVATKW 281 (289)
Q Consensus 236 ~~~~V~P~~G~allF~n~~~~g~~D~~~~H~g~PV--~~G~K~v~~~W 281 (289)
..+.++-++|++++|.| .+.+|+..+. ..|.++..+.|
T Consensus 219 ~~~~~~~~~GDlli~dN--------~~~lHgR~~~~~~~~~R~L~R~~ 258 (258)
T PF02668_consen 219 YTYRHRWQPGDLLIWDN--------HRVLHGRTAFDDPDGDRHLLRVW 258 (258)
T ss_dssp GEEEEE--TTEEEEEET--------TTEEEEE--E-STTSSEEEEEEE
T ss_pred hcccccCCCceEEEEcC--------CeeEecCCCCCCCCCCEEEEEeC
Confidence 46788889999999998 5899999999 66889999988
No 56
>PTZ00273 oxidase reductase; Provisional
Probab=63.38 E-value=57 Score=30.51 Aligned_cols=87 Identities=17% Similarity=0.201 Sum_probs=52.0
Q ss_pred cceeeecCCCC-------ccccCcccCCCCCCCCCCCceEEEEEEecCCCCCCcceeccCCCCCCCCCCCCcccccceEE
Q 022995 168 AFNILRYKIGQ-------KYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKV 240 (289)
Q Consensus 168 ~lqv~rY~~G~-------~y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv~eGGeT~Fp~~~~~~~~~~~~~~~~~~~~V 240 (289)
.+++++|.+.. .-.+|+|.. .+|+|. .|. .||==++... ...+.|
T Consensus 178 ~lrl~~YP~~~~~~~~~~g~~~HTD~g------------~lTlL~--qd~-~~GLqV~~~~-------------g~Wi~V 229 (320)
T PTZ00273 178 VFRMKHYPALPQTKKGRTVCGEHTDYG------------IITLLY--QDS-VGGLQVRNLS-------------GEWMDV 229 (320)
T ss_pred eeeeeecCCCCCccccCcccccccCCC------------eEEEEe--cCC-CCceEEECCC-------------CCEEeC
Confidence 47888897531 134676653 578774 342 3553333311 146899
Q ss_pred ecccccEEEEee----cCCCCCCCCCCcccccCcccceEEEEEecccc
Q 022995 241 KPRQGDGLLFYS----LLPNGTIDPTSIHGSCPVVKGEKWVATKWIRD 284 (289)
Q Consensus 241 ~P~~G~allF~n----~~~~g~~D~~~~H~g~PV~~G~K~v~~~W~~~ 284 (289)
+|..|.+||--- .+.||. -..++|.+... ..++|++.-+++-
T Consensus 230 ~p~pg~lvVNvGD~l~~~TnG~-~kSt~HRVv~~-~~~R~Si~~F~~p 275 (320)
T PTZ00273 230 PPLEGSFVVNIGDMMEMWSNGR-YRSTPHRVVNT-GVERYSMPFFCEP 275 (320)
T ss_pred CCCCCeEEEEHHHHHHHHHCCe-eeCCCccccCC-CCCeEEEEEEEcC
Confidence 999998887521 122332 25789999743 3578988777653
No 57
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=63.35 E-value=37 Score=32.48 Aligned_cols=88 Identities=15% Similarity=0.044 Sum_probs=51.8
Q ss_pred cceeeecCCCC------ccccCcccCCCCCCCCCCCceEEEEEEecCCCCCCcceeccCCCCCCCCCCCCcccccceEEe
Q 022995 168 AFNILRYKIGQ------KYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVK 241 (289)
Q Consensus 168 ~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv~eGGeT~Fp~~~~~~~~~~~~~~~~~~~~V~ 241 (289)
-+++.+|.+-. .-.+|+|.. .+|+|+- +...||==+... ...+.|+
T Consensus 214 ~lRl~~YP~~p~~~~~~g~~~HtD~g------------~lTlL~q--~~~v~GLQV~~~--------------g~W~~V~ 265 (362)
T PLN02393 214 CLRVNYYPKCPQPDLTLGLSPHSDPG------------GMTILLP--DDNVAGLQVRRD--------------DAWITVK 265 (362)
T ss_pred eeeeeecCCCCCcccccccccccCCc------------eEEEEee--CCCCCcceeeEC--------------CEEEECC
Confidence 47788886421 255777763 4677643 333345333321 1468899
Q ss_pred cccccEEEEee----cCCCCCCCCCCcccccCcccceEEEEEecccc
Q 022995 242 PRQGDGLLFYS----LLPNGTIDPTSIHGSCPVVKGEKWVATKWIRD 284 (289)
Q Consensus 242 P~~G~allF~n----~~~~g~~D~~~~H~g~PV~~G~K~v~~~W~~~ 284 (289)
|.+|..||--- .+.||. -..++|.+..-...++|++.-+++-
T Consensus 266 p~pgalVVNiGD~l~~~Tng~-~kSt~HRVv~~~~~~R~SiafF~~P 311 (362)
T PLN02393 266 PVPDAFIVNIGDQIQVLSNAI-YKSVEHRVIVNSAKERVSLAFFYNP 311 (362)
T ss_pred CCCCeEEEEcchhhHhhcCCe-eeccceecccCCCCCEEEEEEEecC
Confidence 99998887421 112222 2578999954444579998877654
No 58
>PLN02704 flavonol synthase
Probab=61.60 E-value=31 Score=32.59 Aligned_cols=86 Identities=16% Similarity=0.116 Sum_probs=51.9
Q ss_pred ceeeecCCCC------ccccCcccCCCCCCCCCCCceEEEEEEecCCCCCCcceeccCCCCCCCCCCCCcccccceEEec
Q 022995 169 FNILRYKIGQ------KYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKP 242 (289)
Q Consensus 169 lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv~eGGeT~Fp~~~~~~~~~~~~~~~~~~~~V~P 242 (289)
+++.+|.+.. ...+|+|+. .+|+|+- |. .||==+... ...+.|+|
T Consensus 201 lrl~~YP~~~~~~~~~g~~~HtD~g------------~lTlL~q--d~-v~GLQV~~~--------------g~Wi~V~p 251 (335)
T PLN02704 201 LKINYYPPCPRPDLALGVVAHTDMS------------AITILVP--NE-VQGLQVFRD--------------DHWFDVKY 251 (335)
T ss_pred hhhhcCCCCCCcccccCccCccCCc------------ceEEEec--CC-CCceeEeEC--------------CEEEeCCC
Confidence 6777887521 145777763 5777755 32 444333321 14789999
Q ss_pred ccccEEEEee----cCCCCCCCCCCcccccCcccceEEEEEecccc
Q 022995 243 RQGDGLLFYS----LLPNGTIDPTSIHGSCPVVKGEKWVATKWIRD 284 (289)
Q Consensus 243 ~~G~allF~n----~~~~g~~D~~~~H~g~PV~~G~K~v~~~W~~~ 284 (289)
.+|..||--- .+.||. -..+.|++...-..++|++.-+++-
T Consensus 252 ~pg~lvVNvGD~L~~~TNg~-~kSt~HRVv~~~~~~R~Si~~F~~p 296 (335)
T PLN02704 252 IPNALVIHIGDQIEILSNGK-YKSVLHRTTVNKEKTRMSWPVFLEP 296 (335)
T ss_pred CCCeEEEEechHHHHHhCCe-eecccceeecCCCCCeEEEEEEecC
Confidence 9998777431 112232 3578999965445579998877654
No 59
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]
Probab=61.10 E-value=9 Score=34.76 Aligned_cols=96 Identities=20% Similarity=0.286 Sum_probs=52.4
Q ss_pred CcEEEecCCCCHHHHHHHHHHhhcC-CccceeeecC---C-ceeecccceeecceEEecCCCChhHHHHHHHHHHHHHcC
Q 022995 86 PRALYFPNFATPEQCKSIINMAKLN-LRPSTLALRK---G-ETVDNTQGIRTSSGVFISAAEDESGTLDLIEEKIAKVTM 160 (289)
Q Consensus 86 P~i~~i~nfLs~eEC~~Li~~a~~~-l~~s~v~~~~---G-~~~~~~~~~RtS~~~~l~~~~~~~~i~~~I~~Ri~~~~g 160 (289)
|.|.+++||||.+|=..|+++.+.. +.-|.-.-++ | +.....+..|+.. |.--. ...+.+.+|+..+-+
T Consensus 72 pG~~lie~Fls~~Eea~l~~~~D~~pW~~SQSGRRKQdyGPKvNFkk~Klkt~~--F~G~P----~~~~~v~rrm~~yp~ 145 (306)
T KOG3959|consen 72 PGLTLIENFLSESEEAKLLNMIDTVPWAQSQSGRRKQDYGPKVNFKKKKLKTDT--FVGMP----EYADMVLRRMSEYPV 145 (306)
T ss_pred CCeeehhhhhccchHhHHHHHhccCchhhhcccccccccCCccchhhhhhccCc--ccCCc----hHHHHHHHHhhccch
Confidence 7899999999999999999998752 2222111110 0 0011123344433 33211 256666677665433
Q ss_pred CCC-cccccceeeecCC--CCccccCcccCC
Q 022995 161 LPR-INGEAFNILRYKI--GQKYNSHYDAFD 188 (289)
Q Consensus 161 ~p~-~~~E~lqv~rY~~--G~~y~~H~D~~~ 188 (289)
+.- ...|.. =+.|++ |.--.+|.|...
T Consensus 146 l~gfqp~EqC-nLeYep~kgsaIdpH~DD~W 175 (306)
T KOG3959|consen 146 LKGFQPFEQC-NLEYEPVKGSAIDPHQDDMW 175 (306)
T ss_pred hhccCcHHHc-CcccccccCCccCccccchh
Confidence 211 011211 234765 888999999753
No 60
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=60.26 E-value=6.8 Score=30.41 Aligned_cols=19 Identities=37% Similarity=0.654 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhhhcccc
Q 022995 21 FVFLACLFFFLAGLLGSSL 39 (289)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~ 39 (289)
+++++|++.|++|.+..+=
T Consensus 4 w~l~Lc~~SF~~G~lft~R 22 (95)
T PF13334_consen 4 WVLLLCIASFCAGMLFTNR 22 (95)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 5899999999999998873
No 61
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=57.98 E-value=48 Score=31.66 Aligned_cols=87 Identities=13% Similarity=0.067 Sum_probs=52.1
Q ss_pred cceeeecCCC----C--ccccCcccCCCCCCCCCCCceEEEEEEecCCCCCCcceeccCCCCCCCCCCCCcccccceEEe
Q 022995 168 AFNILRYKIG----Q--KYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVK 241 (289)
Q Consensus 168 ~lqv~rY~~G----~--~y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv~eGGeT~Fp~~~~~~~~~~~~~~~~~~~~V~ 241 (289)
.+++.+|.+- . .-.+|+|+. .+|+|+. | ..||==+... ...+.|+
T Consensus 212 ~lrl~~YP~~~~~~~~~g~~~HTD~g------------~lTlL~q--d-~v~GLQV~~~--------------g~Wi~V~ 262 (360)
T PLN03178 212 QMKINYYPRCPQPDLALGVEAHTDVS------------ALTFILH--N-MVPGLQVLYE--------------GKWVTAK 262 (360)
T ss_pred hhheeccCCCCCCccccCcCCccCCC------------ceEEEee--C-CCCceeEeEC--------------CEEEEcC
Confidence 4678889752 1 245787763 5788743 3 2344333321 1578999
Q ss_pred cccccEEEEee----cCCCCCCCCCCcccccCcccceEEEEEecccc
Q 022995 242 PRQGDGLLFYS----LLPNGTIDPTSIHGSCPVVKGEKWVATKWIRD 284 (289)
Q Consensus 242 P~~G~allF~n----~~~~g~~D~~~~H~g~PV~~G~K~v~~~W~~~ 284 (289)
|.+|.+||--- .+.||. -..++|.+..--...+|++.-+++-
T Consensus 263 p~pg~lvVNiGD~L~~~TNG~-~kSt~HRVv~~~~~~R~Si~~F~~P 308 (360)
T PLN03178 263 CVPDSIVVHIGDTLEILSNGR-YKSILHRGLVNKEKVRISWAVFCEP 308 (360)
T ss_pred CCCCeEEEEccHHHHHHhCCc-cccccceeecCCCCCeEEEEEEecC
Confidence 99998776320 012332 3588999753334579998877654
No 62
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=56.35 E-value=14 Score=27.44 Aligned_cols=30 Identities=33% Similarity=0.537 Sum_probs=24.2
Q ss_pred CCCCCCcccccccccCChhHHHHHHHHHHH
Q 022995 2 KGGKSNKANWSLKSKIELPFVFLACLFFFL 31 (289)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (289)
.++.....+-.+++|..+..|+++|+|+.+
T Consensus 14 s~~~~~~~~~~~eqkt~faFV~~L~~fL~~ 43 (81)
T PF11057_consen 14 SGNPLSASSLDLEQKTAFAFVGLLCLFLGL 43 (81)
T ss_pred CCCCCcccccccccceeehHHHHHHHHHHH
Confidence 455566677889999999999999988764
No 63
>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases catalyze a hydroxylation reaction, which leads to the incorporation of an oxygen atom from dioxygen into a hydroxyl group and conversion of 2OG to succinate and CO2
Probab=51.89 E-value=18 Score=32.55 Aligned_cols=40 Identities=28% Similarity=0.547 Sum_probs=33.7
Q ss_pred cceEEecccccEEEEeecCCCCCCCCCCcccccCccc---ceEEEEEeccc
Q 022995 236 IGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVK---GEKWVATKWIR 283 (289)
Q Consensus 236 ~~~~V~P~~G~allF~n~~~~g~~D~~~~H~g~PV~~---G~K~v~~~W~~ 283 (289)
..+.++-++|++|+|.| .+++|+-.+-.. +.+|..+.|+.
T Consensus 218 ~~~~~~l~~Gdivi~DN--------~r~lHgR~~f~~~~~~~R~L~r~~i~ 260 (262)
T cd00250 218 NQLTVKLEPGDLLIFDN--------RRVLHGRTAFSPRYGGDRWLKGCYVD 260 (262)
T ss_pred hEEEEEcCCCCEEEEec--------hhhhcCCCCCCCCCCCceEEEEEEec
Confidence 45788999999999998 589999988764 57999999975
No 64
>PF11466 Doppel: Prion-like protein Doppel; InterPro: IPR021566 Dpl is a homologue related to the prion protein (PrP). Dpl is toxic to neurons and is expressed in the brains of mice that do not express PrP. In DHPC and SDS micelles, Dpl shoes about 40% alpha-helical structure however in aqueous solution it consists of a random coil. The alpha helical segment can adopt a transmembrane localisation also in a membrane. The unprocessed Dpl protein is thought to posses a possible channel formation mechanism which may be related to toxicity through direct interaction with cell membranes and damage to the cell membrane. ; PDB: 1Z65_A.
Probab=50.22 E-value=16 Score=22.16 Aligned_cols=18 Identities=11% Similarity=0.539 Sum_probs=12.1
Q ss_pred ccccCChhHHHHHHHHHH
Q 022995 13 LKSKIELPFVFLACLFFF 30 (289)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~ 30 (289)
||+.||.-.+-++|+++|
T Consensus 1 Mrk~Lg~~~lAi~c~LL~ 18 (30)
T PF11466_consen 1 MRKHLGGWWLAIVCVLLF 18 (30)
T ss_dssp --SS-SSHHHHHHHHHHH
T ss_pred CccchhhHHHHHHHHHHH
Confidence 688899888888887665
No 65
>PF14033 DUF4246: Protein of unknown function (DUF4246)
Probab=50.17 E-value=32 Score=34.58 Aligned_cols=88 Identities=17% Similarity=0.182 Sum_probs=52.4
Q ss_pred ccCcccCCCCCCCCCCCceEEEEEEecCCC-CCCcceeccCCCC-CC------C---C-CC----CCccc---c--cceE
Q 022995 181 NSHYDAFDPQEYGPQKSQRVASFLVYLTDL-EEGGETMFPFENG-MN------A---D-GS----YDYQK---C--IGLK 239 (289)
Q Consensus 181 ~~H~D~~~~~~~~~~~~~R~~T~liYLNdv-~eGGeT~Fp~~~~-~~------~---~-~~----~~~~~---~--~~~~ 239 (289)
.||+++.- ...-.||.|.|+... -......|-.... .. . + .+ ++... | .-=+
T Consensus 364 ~WHvEG~l-------NE~IvATalYyyd~eNIT~s~L~FR~~~~d~~~~~~~~~~q~~~~~~~~~~g~~~~~~~~q~~Gs 436 (501)
T PF14033_consen 364 SWHVEGQL-------NEHIVATALYYYDSENITESRLSFRQQTDDPDLDQELSYEQDDHEWLERVFGIEDGGPAVQELGS 436 (501)
T ss_pred CccccCCc-------ccceeEEEEEEEecCccCCCceEeeeeccCccccccccccccchhHHHHhcCCCCCccceEEcCc
Confidence 68888753 356789999998742 2333555543221 11 0 0 00 12221 1 1125
Q ss_pred EecccccEEEEeecCCCCCCCCCCcccccCcc------cceEEEEEecccc
Q 022995 240 VKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVV------KGEKWVATKWIRD 284 (289)
Q Consensus 240 V~P~~G~allF~n~~~~g~~D~~~~H~g~PV~------~G~K~v~~~W~~~ 284 (289)
|.-+.|.+|+|+| ...|.+.|.. -|.+-+++.|+-+
T Consensus 437 v~~~~gr~i~fPN---------~~qhrv~~f~L~D~tkpGhrkil~lfLvD 478 (501)
T PF14033_consen 437 VETKEGRLIAFPN---------TLQHRVSPFELADPTKPGHRKILALFLVD 478 (501)
T ss_pred EEccCCcEEeccc---------hhhhccCCccccCCCCCCcEEEEEEEecC
Confidence 7788999999999 4667776553 4888888888754
No 66
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=49.55 E-value=79 Score=29.95 Aligned_cols=90 Identities=19% Similarity=0.259 Sum_probs=58.9
Q ss_pred ccccceeeecCC------CCccccCcccCCCCCCCCCCCceEEEEEEecCCCCCCcceeccCCCCCCCCCCCCcccccce
Q 022995 165 NGEAFNILRYKI------GQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGL 238 (289)
Q Consensus 165 ~~E~lqv~rY~~------G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv~eGGeT~Fp~~~~~~~~~~~~~~~~~~~ 238 (289)
.++.++++||.. ++.-+.|.|+. .+|+| +.| ..||=-+.+... ..+
T Consensus 172 ~~~~~RLlrYP~~~~~~~~~~~GaHtD~G------------~lTLl--~Qd-~~~GLqv~~~~g-------------~Wl 223 (322)
T COG3491 172 PNSVLRLLRYPSRPAREGADGVGAHTDYG------------LLTLL--FQD-DVGGLEVRPPNG-------------GWL 223 (322)
T ss_pred chheEEEEecCCCcccccccccccccCCC------------eEEEE--Eec-ccCCeEEecCCC-------------Cee
Confidence 466799999983 34457888874 35554 334 346655655421 479
Q ss_pred EEecccccEEEEee----cCCCCCCCCCCcccccCcccceEEEEEeccc
Q 022995 239 KVKPRQGDGLLFYS----LLPNGTIDPTSIHGSCPVVKGEKWVATKWIR 283 (289)
Q Consensus 239 ~V~P~~G~allF~n----~~~~g~~D~~~~H~g~PV~~G~K~v~~~W~~ 283 (289)
.|.|..|..|+..- .+.+|. -..|.|.++--..-++|.+--++.
T Consensus 224 ~v~P~pgtlvVNiGdmLe~~Tng~-lrST~HRV~~~~~~~R~SipfF~~ 271 (322)
T COG3491 224 DVPPIPGTLVVNIGDMLERWTNGR-LRSTVHRVRNPPGVDRYSIPFFLE 271 (322)
T ss_pred ECCCCCCeEEEeHHHHHHHHhCCe-eccccceeecCCCccceeeeeecc
Confidence 99999999999752 122332 358899998776447888765543
No 67
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=49.32 E-value=3.4 Score=40.68 Aligned_cols=71 Identities=28% Similarity=0.306 Sum_probs=54.5
Q ss_pred CceEEEEEEecCCCCCCcceeccCCCCCCCCCCCCcccccceEEecccccEEEEeecCCCCCCCCCCcccccCcccceEE
Q 022995 197 SQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKW 276 (289)
Q Consensus 197 ~~R~~T~liYLNdv~eGGeT~Fp~~~~~~~~~~~~~~~~~~~~V~P~~G~allF~n~~~~g~~D~~~~H~g~PV~~G~K~ 276 (289)
.-+......|+||..+||+..|......+ ....++|+-|+.+-|.+- ..-.|+..+|++|..-
T Consensus 364 ~~~~~~a~~~~~dd~~~~el~~t~~d~~t----------~~a~~k~~~~re~~~~~g-------~e~~~~~~~~~kg~e~ 426 (471)
T KOG4459|consen 364 TELDYFALLYLNDDFEGGELLFTEPDAKT----------YTAISKPECGRECAFSSG-------AENPHGVKAVTKGLEC 426 (471)
T ss_pred HHHHhhccHhhcCccccccceecCCcccc----------hhhccccccccchhhhcc-------ccCccchhhhhhhhHH
Confidence 45678889999999999999996543221 467899999999999762 3556999999999877
Q ss_pred EEEecccc
Q 022995 277 VATKWIRD 284 (289)
Q Consensus 277 v~~~W~~~ 284 (289)
-+.-|...
T Consensus 427 ~~~lw~~~ 434 (471)
T KOG4459|consen 427 AVALWPTL 434 (471)
T ss_pred hhhcCccc
Confidence 77677543
No 68
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=48.04 E-value=8 Score=31.41 Aligned_cols=30 Identities=30% Similarity=0.565 Sum_probs=19.4
Q ss_pred cccccccCChhHHHHHHHHHHHHhhhccccc
Q 022995 10 NWSLKSKIELPFVFLACLFFFLAGLLGSSLL 40 (289)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (289)
||++++||.+...++++++. +.|.++-..+
T Consensus 1 Nl~I~~KL~~~f~~~~~l~~-~~~~~~~~~l 30 (181)
T PF12729_consen 1 NLSIRTKLILGFGLIILLLL-IVGIVGLYSL 30 (181)
T ss_pred CCcHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 89999999988666555544 4444444333
No 69
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=40.60 E-value=1.2e+02 Score=28.53 Aligned_cols=91 Identities=19% Similarity=0.158 Sum_probs=52.6
Q ss_pred cceeeecCCCC-----c--cccCcccCCCCCCCCCCCceEEEEEEecCCCCCCcceeccCCCCCCCCCCCCcccccceEE
Q 022995 168 AFNILRYKIGQ-----K--YNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKV 240 (289)
Q Consensus 168 ~lqv~rY~~G~-----~--y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv~eGGeT~Fp~~~~~~~~~~~~~~~~~~~~V 240 (289)
.+++++|.+.. . ..+|+|.. .+|+|+ .| ..||==+...... . +...+.|
T Consensus 183 ~lrl~~YP~~~~~~~~~~g~~~HTD~g------------~lTlL~--qd-~v~GLQV~~~~~~--~-------~g~Wi~V 238 (332)
T PLN03002 183 TMRLLRYQGISDPSKGIYACGAHSDFG------------MMTLLA--TD-GVMGLQICKDKNA--M-------PQKWEYV 238 (332)
T ss_pred heeeeeCCCCCCcccCccccccccCCC------------eEEEEe--eC-CCCceEEecCCCC--C-------CCcEEEC
Confidence 47899997631 1 45677753 578884 33 2455444432100 0 0146889
Q ss_pred ecccccEEEEe----ecCCCCCCCCCCcccccCcccceEEEEEecccc
Q 022995 241 KPRQGDGLLFY----SLLPNGTIDPTSIHGSCPVVKGEKWVATKWIRD 284 (289)
Q Consensus 241 ~P~~G~allF~----n~~~~g~~D~~~~H~g~PV~~G~K~v~~~W~~~ 284 (289)
.|.+|..||-- ..+.||. -..+.|.+..- ..++|++.-+++-
T Consensus 239 pp~pg~~VVNiGD~L~~wTng~-~kSt~HRVv~~-~~~R~Sia~F~~p 284 (332)
T PLN03002 239 PPIKGAFIVNLGDMLERWSNGF-FKSTLHRVLGN-GQERYSIPFFVEP 284 (332)
T ss_pred CCCCCeEEEEHHHHHHHHhCCe-eECcCCeecCC-CCCeeEEEEEecC
Confidence 99999888742 1122332 25788998533 3578888777653
No 70
>PF09879 DUF2106: Predicted membrane protein (DUF2106); InterPro: IPR011313 [NiFe] hydrogenases function in H2 metabolism in a variety of microorganisms, enabling them to use H2 as a source of reducing equivalent under aerobic and anaerobic conditions [NiFe] hydrogenases consist of two subunits, hydrogenase large and hydrogenase small. The large subunit contains the binuclear [NiFe] active site, while the small subunit binds at least one [4Fe-4S] cluster []. Energy-converting [NiFe] hydrogenases (or [NiFe]-hydrogenase-3-type) form a distinct group within the [NiFe] hydrogenase family [, ]. Members of this subgroup include: Hydrogenase 3 and 4 (Hyc and Hyf) from Escherichia coli CO-induced hydrogenase (Coo) from Rhodospirillum rubrum Mbh hydrogenase from Pyrococcus furiosus Eha and Ehb hydrogenases from Methanothermobacter species Ech hydrogenase from Methanosarcina barkeri Energy-converting [NiFe] hydrogenases are membrane-bound enzymes with a six-subunit core: the large and small hydrogenase subunits, plus two hydrophilic proteins and two integral membrane proteins. Their large and small subunits show little sequence similarity to other [NiFe] hydrogenases, except for key conserved residues coordinating the active site and [FeS] cluster. However, they show considerable sequence similarity to the six-subunit, energy-conserving NADH:quinone oxidoreductases (complex I), which are present in cytoplasmic membranes of many bacteria and in inner mitochondrial membranes. However, the reactions they catalyse differ significantly from complex I. Energy-converting [NiFe] hydrogenases function as ion pumps. Eha and Ehb hydrogenases contain extra subunits in addition to those shared by other energy-converting [NiFe] hydrogenases (or [NiFe]-hydrogenase-3-type). Eha contains a 6[4Fe-4S] polyferredoxin, a 10[4F-4S] polyferredoxin, ten other predicted integral membrane proteins (EhaA IPR011306 from INTERPRO, EhaB IPR011314 from INTERPRO, EhaC IPR011316 from INTERPRO, EhaD IPR011308 from INTERPRO, EhaE IPR011317 from INTERPRO, EhaF IPR011313 from INTERPRO, EhaG IPR011311 from INTERPRO, EhaI IPR011318 from INTERPRO, EhaK IPR011319 from INTERPRO, EhaL IPR011305 from INTERPRO) and four hydrophobic subunits (EhaM, EhaR IPR014502 from INTERPRO, EhS, EhT) []. The ten predicted integral membrane proteins are absent from Ech, Coo, Hyc and Hyf complexes, which may have simpler membrane components than Eha. Eha and Ehb catalyse the reduction of low-potential redox carriers (e.g. ferredoxins or polyferredoxins), which then might function as electron donors to oxidoreductases. Based on sequence similarity and genome context analysis, other organisms such as Methanopyrus kandleri, Methanocaldococcus jannaschii, and Methanothermobacter marburgensis also encode Eha-like [NiFe]-hydrogenase-3-type complexes and have very similar eha operon structure. This entry represents small membrane proteins that are predicted to be the EhaF transmembrane subunits of multi-subunit membrane-bound [NiFe]-hydrogenase Eha complexes.
Probab=33.38 E-value=74 Score=26.62 Aligned_cols=78 Identities=15% Similarity=0.183 Sum_probs=47.5
Q ss_pred ChhHHHHHHHH-HHHHhhhccccccCCcCCCCCchhhhhhccccCCcCCCCCCCCCccccccc--EEeecCCcEEEecCC
Q 022995 18 ELPFVFLACLF-FFLAGLLGSSLLSQDVTAARPSARVVESVKDEYKWMPHGQAGDDSVTNIPF--QVLSWMPRALYFPNF 94 (289)
Q Consensus 18 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~ls~~P~i~~i~nf 94 (289)
.+|-+|.+++. .+++|++...-+ +.+..-|+|---+.+....+..|..+-|.|+-..+.+ |--..+|.+-.+...
T Consensus 15 ~v~rlfa~~l~~i~~~gl~~P~~~--n~dQLYPkp~pq~qi~~~~pLaPYDRGGvpl~~pa~vksQYPq~~p~~G~iTaY 92 (153)
T PF09879_consen 15 NVPRLFALFLCLILIIGLFVPLTY--NEDQLYPKPAPQSQIDAKSPLAPYDRGGVPLEEPADVKSQYPQNEPNLGKITAY 92 (153)
T ss_pred hHHHHHHHHHHHHHHHHHhCCccc--CcccccCCCCchhhcccCCCCCcccCCCCccCCcchhhhhCCccCcchhhhhhh
Confidence 46666655444 447888866544 3444555544434443334556666778888766655 344567888888888
Q ss_pred CCH
Q 022995 95 ATP 97 (289)
Q Consensus 95 Ls~ 97 (289)
||+
T Consensus 93 LtP 95 (153)
T PF09879_consen 93 LTP 95 (153)
T ss_pred hhH
Confidence 886
No 71
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=31.48 E-value=85 Score=23.39 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=30.1
Q ss_pred EEecCCCCCCcceeccCCCCCCCCCCCCcccccceEEecccccEEEEeecCCCCCCCCCCcccccCcccc
Q 022995 204 LVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKG 273 (289)
Q Consensus 204 liYLNdv~eGGeT~Fp~~~~~~~~~~~~~~~~~~~~V~P~~G~allF~n~~~~g~~D~~~~H~g~PV~~G 273 (289)
+.-+++...|+...|.... ..+.|.-..|....|.| ...|.|+|+..|
T Consensus 4 v~~~~~l~~g~~~~~~~~g-------------~~~~v~r~~~~~~a~~~---------~CpH~g~~L~~g 51 (98)
T cd03528 4 VCAVDELPEGEPKRVDVGG-------------RPIAVYRVDGEFYATDD---------LCTHGDASLSEG 51 (98)
T ss_pred EEEhhhcCCCCEEEEEECC-------------eEEEEEEECCEEEEECC---------cCCCCCCCCCCC
Confidence 3445666666666664321 24455555677777765 788999998765
No 72
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=29.91 E-value=90 Score=24.03 Aligned_cols=49 Identities=16% Similarity=0.187 Sum_probs=31.8
Q ss_pred EEEEecCCCCCCcceeccCCCCCCCCCCCCcccccceEEecccccEEEEeecCCCCCCCCCCcccccCcccc
Q 022995 202 SFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKG 273 (289)
Q Consensus 202 T~liYLNdv~eGGeT~Fp~~~~~~~~~~~~~~~~~~~~V~P~~G~allF~n~~~~g~~D~~~~H~g~PV~~G 273 (289)
+.+.-++|..+|+...|... ..+.|.-..|....|.| ...|.++|+..|
T Consensus 4 ~~v~~~~~l~~g~~~~~~~~--------------~~i~v~~~~g~~~A~~~---------~CpH~g~~L~~G 52 (106)
T PRK09965 4 IYACPVADLPEGEALRVDTS--------------PVIALFNVGGEFYAIDD---------RCSHGNASLSEG 52 (106)
T ss_pred EEeeeHHHcCCCCeEEEeCC--------------CeEEEEEECCEEEEEeC---------cCCCCCCCCCce
Confidence 34556778888877766531 12344445777777765 788999988654
No 73
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=29.74 E-value=34 Score=31.25 Aligned_cols=33 Identities=21% Similarity=0.241 Sum_probs=23.0
Q ss_pred ccCcccCCCCCCCCCCCceEEEEEEecCCCCCCcceecc
Q 022995 181 NSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFP 219 (289)
Q Consensus 181 ~~H~D~~~~~~~~~~~~~R~~T~liYLNdv~eGGeT~Fp 219 (289)
.+|.|...... .-.+++|--+.-..+||+|.|-
T Consensus 95 ~wHtD~sy~~~------pp~~~~L~~~~~p~~GG~T~fa 127 (277)
T PRK09553 95 NWHTDVTFIET------PPLGAILAAKQLPSTGGDTLWA 127 (277)
T ss_pred CCeecccCeeC------CCceeEEEEEecCCCCCccHhh
Confidence 49999976431 2236666666667899999993
No 74
>PF04650 YSIRK_signal: YSIRK type signal peptide; InterPro: IPR005877 Many surface proteins found in Streptococcus, Staphylococcus, and related lineages share apparently homologous signal sequences. A motif resembling [YF]SIRKxxxGxxS[VIA] appears at the start of the transmembrane domain. The GxxS motif appears perfectly conserved, suggesting a specific function and not just homology. ; GO: 0016020 membrane
Probab=28.48 E-value=38 Score=20.10 Aligned_cols=23 Identities=26% Similarity=0.622 Sum_probs=18.3
Q ss_pred ccccccc-ccCChhHHHHHHHHHH
Q 022995 8 KANWSLK-SKIELPFVFLACLFFF 30 (289)
Q Consensus 8 ~~~~~~~-~~~~~~~~~~~~~~~~ 30 (289)
+--||+| -+.|+..|++...||+
T Consensus 4 ~~rysIRK~svGv~SV~ig~~~~~ 27 (27)
T PF04650_consen 4 KQRYSIRKLSVGVASVLIGTLFFL 27 (27)
T ss_pred ccEEeEEccccchhHHHHHHHHhC
Confidence 4568888 7899999998887764
No 75
>KOG1971 consensus Lysyl hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=27.61 E-value=55 Score=32.06 Aligned_cols=79 Identities=19% Similarity=0.210 Sum_probs=45.9
Q ss_pred CCCCceEEEEEEecCCCCCCcceeccCCCCCCCCCCCCcccccceEEecccccEEEEeecCCCCCCCCCCcccccCcccc
Q 022995 194 PQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKG 273 (289)
Q Consensus 194 ~~~~~R~~T~liYLNdv~eGGeT~Fp~~~~~~~~~~~~~~~~~~~~V~P~~G~allF~n~~~~g~~D~~~~H~g~PV~~G 273 (289)
.....|-.|+.+||++..+||+..|-......--...+.. .-+...=..|-+++..+ .+.|+..+-+.|
T Consensus 277 ~~~~~~e~~l~v~l~nq~~gG~L~~~~~~~~~h~~~~~~~--EiFdn~h~p~qa~LHrg---------~~~~~a~~~~~~ 345 (415)
T KOG1971|consen 277 FCVDAREVGLFVCLSNQFEGGELLFTGKYCTKHLRTDDLW--EIFDNSHDPGQAYLHRG---------YHKHGARATIVG 345 (415)
T ss_pred cccchhhcceeEEecccccCCeeEeeccccccccCCCchh--hhccCcCCCccceecCc---------chhccccccCCC
Confidence 3456789999999999999999999754321100000000 11222223566677765 455666565556
Q ss_pred eEEEEEeccc
Q 022995 274 EKWVATKWIR 283 (289)
Q Consensus 274 ~K~v~~~W~~ 283 (289)
.-+.-..|+.
T Consensus 346 ~~~~nv~~~~ 355 (415)
T KOG1971|consen 346 QPCPNVYWFP 355 (415)
T ss_pred CCCCceeeeh
Confidence 5555555653
No 76
>PF10161 DDDD: Putative mitochondrial precursor protein; InterPro: IPR018782 This entry represents a family of small conserved proteins found from nematodes to humans. The C-terminal region is rich in asparagine. These proteins have been putatively designated as mitochondrial precursor proteins but this has not been confirmed.
Probab=25.00 E-value=17 Score=27.21 Aligned_cols=26 Identities=19% Similarity=-0.027 Sum_probs=22.7
Q ss_pred cccCChhHHHHHHHHHHHHhhhcccc
Q 022995 14 KSKIELPFVFLACLFFFLAGLLGSSL 39 (289)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (289)
+.++|+..++.+|+-++++|+++|-=
T Consensus 34 ~~~fgl~~v~~vvip~l~~Ga~isk~ 59 (79)
T PF10161_consen 34 KMPFGLLRVLAVVIPGLYLGATISKN 59 (79)
T ss_pred cccchhheeeeeeccHHHHHHHHHHH
Confidence 46789999999999999999998864
No 77
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=24.64 E-value=59 Score=26.25 Aligned_cols=15 Identities=13% Similarity=0.407 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHhhh
Q 022995 21 FVFLACLFFFLAGLL 35 (289)
Q Consensus 21 ~~~~~~~~~~~~~~~ 35 (289)
+||++++|++|++++
T Consensus 6 ~iii~~i~l~~~~~~ 20 (130)
T PF12273_consen 6 AIIIVAILLFLFLFY 20 (130)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 78
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=24.38 E-value=72 Score=31.31 Aligned_cols=37 Identities=30% Similarity=0.422 Sum_probs=28.7
Q ss_pred CCCcccccccccCChhHHHHHHHHHHHHhhhcccccc
Q 022995 5 KSNKANWSLKSKIELPFVFLACLFFFLAGLLGSSLLS 41 (289)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (289)
|+...-.+-|..+..-.|+++|++.|++|.+.++-+-
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~~~~~ 40 (408)
T PLN03193 4 KSRGEEYSSRSVVSRKWTLLLCLGCFCAGMLFTDRMW 40 (408)
T ss_pred ccccccccccccccHHHHHHHHHHHHHHHHhhccccc
Confidence 3334456677888888999999999999998876553
No 79
>PRK02655 psbI photosystem II reaction center I protein I; Provisional
Probab=24.26 E-value=66 Score=20.58 Aligned_cols=12 Identities=42% Similarity=0.506 Sum_probs=5.9
Q ss_pred hhhccccccCCc
Q 022995 33 GLLGSSLLSQDV 44 (289)
Q Consensus 33 ~~~~~~~~~~~~ 44 (289)
+.|+.-++|.|+
T Consensus 17 sLFiFGflsnDP 28 (38)
T PRK02655 17 GLFVFGFLSSDP 28 (38)
T ss_pred HHHHcccCCCCC
Confidence 344444555555
No 80
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=23.73 E-value=1.4e+02 Score=22.73 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=20.2
Q ss_pred ceEEecccccEEEEeecCCCCCCCCCCcccccCcccce
Q 022995 237 GLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGE 274 (289)
Q Consensus 237 ~~~V~P~~G~allF~n~~~~g~~D~~~~H~g~PV~~G~ 274 (289)
-+.++...|....|.| ...|.++|+..|.
T Consensus 25 ~~~~~~~~g~~~A~~n---------~CpH~g~~L~~g~ 53 (108)
T cd03474 25 VLLVAPEGGEFRAFQG---------ICPHQEIPLAEGG 53 (108)
T ss_pred EEEEEccCCeEEEEcC---------cCCCCCCCcccCc
Confidence 3455666777777765 7888888887663
No 81
>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.
Probab=23.54 E-value=1.3e+02 Score=22.44 Aligned_cols=48 Identities=13% Similarity=0.108 Sum_probs=27.8
Q ss_pred ecCCCCCCcceeccCCCCCCCCCCCCcccccceEEecccccEEEEeecCCCCCCCCCCcccccCcccce
Q 022995 206 YLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGE 274 (289)
Q Consensus 206 YLNdv~eGGeT~Fp~~~~~~~~~~~~~~~~~~~~V~P~~G~allF~n~~~~g~~D~~~~H~g~PV~~G~ 274 (289)
-++|..+|+...|.... ..-+.++...|....|.| ...|.++|+..|.
T Consensus 6 ~~~~l~~~~~~~~~~~g------------~~i~l~r~~~g~~~A~~~---------~CpH~g~~L~~g~ 53 (98)
T cd03530 6 ALEDIPPRGARKVQTGG------------GEIAVFRTADDEVFALEN---------RCPHKGGPLSEGI 53 (98)
T ss_pred EHHHCCCCCcEEEEECC------------EEEEEEEeCCCCEEEEcC---------cCCCCCCCccCCE
Confidence 45566666666554311 012233334477666655 7889999988763
No 82
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=23.20 E-value=35 Score=25.73 Aligned_cols=15 Identities=20% Similarity=0.288 Sum_probs=12.2
Q ss_pred ecCCCCHHHHHHHHH
Q 022995 91 FPNFATPEQCKSIIN 105 (289)
Q Consensus 91 i~nfLs~eEC~~Li~ 105 (289)
-++|+|.+||+.|..
T Consensus 25 ~~G~is~~Ecd~Ir~ 39 (81)
T cd08788 25 TRGFFSSYDCDEIRL 39 (81)
T ss_pred HcCCccHhhcchhhc
Confidence 368999999998764
No 83
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=22.42 E-value=93 Score=29.70 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=32.4
Q ss_pred cceEEecccccEEEEeecCCCCCCCCCCcccccCcccceEEEEEeccc
Q 022995 236 IGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVATKWIR 283 (289)
Q Consensus 236 ~~~~V~P~~G~allF~n~~~~g~~D~~~~H~g~PV~~G~K~v~~~W~~ 283 (289)
.-+.++=++|++|+|.| .+++|+...-. |.+|..-.|+.
T Consensus 311 ~~~~~~l~pGd~vi~DN--------~rvLHgRtaf~-g~R~L~G~Y~d 349 (362)
T TIGR02410 311 NEIEFKLRPGTVLIFDN--------WRVLHSRTSFT-GYRRMCGCYLT 349 (362)
T ss_pred cEEEEEcCCccEEEEee--------EEEeecCCCcC-CceEEEEEEEc
Confidence 35678888999999998 58999998885 88888877764
No 84
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=22.15 E-value=75 Score=20.15 Aligned_cols=11 Identities=27% Similarity=0.679 Sum_probs=5.0
Q ss_pred HHHHHHhhhcc
Q 022995 27 LFFFLAGLLGS 37 (289)
Q Consensus 27 ~~~~~~~~~~~ 37 (289)
+.+|++||+.+
T Consensus 16 v~LFifGflsn 26 (36)
T PF02532_consen 16 VSLFIFGFLSN 26 (36)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHhccccCC
Confidence 33345555443
No 85
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=21.95 E-value=84 Score=18.34 Aligned_cols=13 Identities=38% Similarity=0.697 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHh
Q 022995 21 FVFLACLFFFLAG 33 (289)
Q Consensus 21 ~~~~~~~~~~~~~ 33 (289)
.+|+++++|.|+|
T Consensus 10 il~~l~a~~~Lag 22 (25)
T PF08139_consen 10 ILFPLLALFMLAG 22 (25)
T ss_pred HHHHHHHHHHHhh
Confidence 4667777777776
No 86
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=21.64 E-value=84 Score=22.50 Aligned_cols=23 Identities=30% Similarity=0.618 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHhhhcccccc
Q 022995 19 LPFVFLACLFFFLAGLLGSSLLS 41 (289)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~ 41 (289)
+|.++++.++||.+|+..--.++
T Consensus 7 iQii~l~AlI~~pLGyl~~~~~~ 29 (62)
T PF11120_consen 7 IQIIILCALIFFPLGYLARRWLP 29 (62)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhH
Confidence 46778888888899998877653
No 87
>CHL00024 psbI photosystem II protein I
Probab=20.23 E-value=72 Score=20.21 Aligned_cols=11 Identities=36% Similarity=0.332 Sum_probs=5.2
Q ss_pred hhccccccCCc
Q 022995 34 LLGSSLLSQDV 44 (289)
Q Consensus 34 ~~~~~~~~~~~ 44 (289)
.|+.-++|.|+
T Consensus 18 LFifGFlsnDp 28 (36)
T CHL00024 18 LFIFGFLSNDP 28 (36)
T ss_pred HHHccccCCCC
Confidence 33444455554
Done!