Query 022996
Match_columns 289
No_of_seqs 330 out of 1567
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 07:41:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022996.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022996hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03041 GST_N_2GST_N GST_N fam 99.8 5E-19 1.1E-23 134.0 8.5 76 141-217 2-77 (77)
2 cd03045 GST_N_Delta_Epsilon GS 99.7 2.7E-17 5.9E-22 122.0 8.6 73 141-215 1-74 (74)
3 cd03052 GST_N_GDAP1 GST_N fami 99.7 5.3E-17 1.1E-21 122.3 8.3 72 141-214 1-73 (73)
4 cd03059 GST_N_SspA GST_N famil 99.7 7.4E-17 1.6E-21 119.1 8.7 73 141-217 1-73 (73)
5 PF13417 GST_N_3: Glutathione 99.7 6.6E-17 1.4E-21 121.6 7.8 73 143-219 1-73 (75)
6 cd03051 GST_N_GTT2_like GST_N 99.7 2E-16 4.3E-21 116.3 8.4 73 141-214 1-74 (74)
7 PRK15113 glutathione S-transfe 99.7 3.2E-16 6.9E-21 139.1 11.1 99 139-239 4-110 (214)
8 cd03056 GST_N_4 GST_N family, 99.7 2.6E-16 5.6E-21 115.8 8.5 72 141-214 1-73 (73)
9 cd03048 GST_N_Ure2p_like GST_N 99.7 4.1E-16 8.9E-21 118.3 9.4 79 140-219 1-81 (81)
10 cd03053 GST_N_Phi GST_N family 99.7 3.7E-16 7.9E-21 116.7 8.8 74 141-216 2-76 (76)
11 cd03050 GST_N_Theta GST_N fami 99.7 4.8E-16 1E-20 116.5 8.7 75 141-217 1-76 (76)
12 cd03058 GST_N_Tau GST_N family 99.7 5.3E-16 1.1E-20 115.7 8.7 73 141-217 1-74 (74)
13 PRK09481 sspA stringent starva 99.6 9.1E-16 2E-20 135.9 10.6 83 140-226 10-93 (211)
14 COG0625 Gst Glutathione S-tran 99.6 9.9E-16 2.1E-20 135.1 10.0 85 141-226 1-86 (211)
15 cd03037 GST_N_GRX2 GST_N famil 99.6 8E-16 1.7E-20 113.9 7.8 71 141-215 1-71 (71)
16 cd03040 GST_N_mPGES2 GST_N fam 99.6 1.4E-15 3E-20 114.1 8.5 75 140-218 1-77 (77)
17 cd03060 GST_N_Omega_like GST_N 99.6 1.7E-15 3.7E-20 112.5 8.5 69 142-213 2-70 (71)
18 PLN02473 glutathione S-transfe 99.6 2.5E-15 5.4E-20 132.5 10.7 97 140-238 2-103 (214)
19 cd03044 GST_N_EF1Bgamma GST_N 99.6 2E-15 4.4E-20 113.3 8.5 73 142-215 2-74 (75)
20 cd03057 GST_N_Beta GST_N famil 99.6 3.4E-15 7.5E-20 112.0 8.8 76 141-218 1-77 (77)
21 cd03047 GST_N_2 GST_N family, 99.6 3.6E-15 7.9E-20 111.1 8.4 72 141-214 1-73 (73)
22 PRK13972 GSH-dependent disulfi 99.6 1.3E-14 2.7E-19 128.6 13.3 97 141-239 2-105 (215)
23 cd03055 GST_N_Omega GST_N fami 99.6 5.9E-15 1.3E-19 114.8 9.3 77 135-214 13-89 (89)
24 cd03042 GST_N_Zeta GST_N famil 99.6 5E-15 1.1E-19 109.1 8.1 72 141-214 1-73 (73)
25 cd03061 GST_N_CLIC GST_N famil 99.6 5.4E-15 1.2E-19 117.1 8.6 71 147-221 20-90 (91)
26 cd03076 GST_N_Pi GST_N family, 99.6 3.7E-15 7.9E-20 111.7 6.8 73 140-216 1-73 (73)
27 KOG0868 Glutathione S-transfer 99.6 3.2E-15 6.9E-20 131.1 6.9 87 138-226 3-92 (217)
28 KOG0867 Glutathione S-transfer 99.6 8E-15 1.7E-19 132.8 9.5 106 139-246 1-111 (226)
29 cd03046 GST_N_GTT1_like GST_N 99.6 1.2E-14 2.5E-19 108.1 8.7 75 141-218 1-76 (76)
30 cd03049 GST_N_3 GST_N family, 99.6 9E-15 2E-19 108.6 8.1 71 141-214 1-73 (73)
31 PF13409 GST_N_2: Glutathione 99.6 5.9E-15 1.3E-19 110.1 6.6 68 148-216 1-70 (70)
32 cd03038 GST_N_etherase_LigE GS 99.6 1.1E-14 2.4E-19 111.4 7.6 75 141-218 1-84 (84)
33 PLN02395 glutathione S-transfe 99.5 3.3E-14 7.1E-19 125.2 11.1 97 139-238 1-102 (215)
34 cd03080 GST_N_Metaxin_like GST 99.5 2E-14 4.3E-19 108.1 7.9 67 141-218 2-75 (75)
35 cd00570 GST_N_family Glutathio 99.5 2.7E-14 5.9E-19 101.4 8.2 71 141-214 1-71 (71)
36 cd03039 GST_N_Sigma_like GST_N 99.5 1.1E-14 2.4E-19 108.1 6.2 72 141-215 1-72 (72)
37 PRK10387 glutaredoxin 2; Provi 99.5 5.6E-14 1.2E-18 123.1 10.8 78 141-223 1-79 (210)
38 PRK11752 putative S-transferas 99.5 1E-13 2.3E-18 127.9 10.8 97 140-238 44-150 (264)
39 TIGR01262 maiA maleylacetoacet 99.5 2.5E-13 5.5E-18 119.0 10.7 93 142-236 1-97 (210)
40 PRK10542 glutathionine S-trans 99.5 3.4E-13 7.3E-18 117.4 11.3 78 141-220 1-80 (201)
41 TIGR02182 GRXB Glutaredoxin, G 99.5 1.3E-13 2.9E-18 122.5 8.6 76 142-222 1-77 (209)
42 TIGR02190 GlrX-dom Glutaredoxi 99.4 3.8E-13 8.2E-18 102.5 8.4 75 136-214 5-79 (79)
43 KOG0406 Glutathione S-transfer 99.4 5.4E-13 1.2E-17 121.6 10.7 84 139-226 8-94 (231)
44 PF02798 GST_N: Glutathione S- 99.4 3.2E-13 6.9E-18 102.2 7.4 73 140-215 2-76 (76)
45 cd03075 GST_N_Mu GST_N family, 99.4 3.8E-13 8.3E-18 103.4 7.9 74 142-217 2-82 (82)
46 PLN02378 glutathione S-transfe 99.4 3.4E-13 7.3E-18 120.1 8.3 72 145-220 16-87 (213)
47 cd03077 GST_N_Alpha GST_N fami 99.4 7.1E-13 1.5E-17 101.0 8.6 72 140-218 1-77 (79)
48 PRK10357 putative glutathione 99.4 5.5E-13 1.2E-17 116.5 9.1 83 141-226 1-84 (202)
49 cd03054 GST_N_Metaxin GST_N fa 99.4 5.6E-13 1.2E-17 99.0 7.5 65 141-216 1-72 (72)
50 TIGR00862 O-ClC intracellular 99.4 5.2E-13 1.1E-17 122.3 8.7 75 146-224 16-90 (236)
51 cd03043 GST_N_1 GST_N family, 99.4 7.8E-13 1.7E-17 99.2 8.1 68 145-214 6-73 (73)
52 cd03029 GRX_hybridPRX5 Glutare 99.4 2.1E-12 4.5E-17 96.2 8.3 71 140-214 2-72 (72)
53 PRK10638 glutaredoxin 3; Provi 99.3 3.1E-12 6.6E-17 98.2 7.9 75 138-215 1-75 (83)
54 PLN02817 glutathione dehydroge 99.3 3.5E-12 7.7E-17 118.4 8.9 71 146-220 70-140 (265)
55 PTZ00057 glutathione s-transfe 99.3 1.2E-11 2.7E-16 109.2 7.9 79 139-219 3-85 (205)
56 cd03027 GRX_DEP Glutaredoxin ( 99.2 3.5E-11 7.6E-16 89.9 7.1 69 140-211 2-70 (73)
57 COG0695 GrxC Glutaredoxin and 99.2 5.5E-11 1.2E-15 91.6 7.4 75 139-215 1-76 (80)
58 PRK11200 grxA glutaredoxin 1; 99.2 8.9E-11 1.9E-15 90.3 8.2 77 139-218 1-84 (85)
59 COG2999 GrxB Glutaredoxin 2 [P 99.2 3.3E-11 7.1E-16 105.9 6.4 76 141-220 1-76 (215)
60 TIGR02183 GRXA Glutaredoxin, G 99.2 1.2E-10 2.6E-15 90.4 8.4 75 141-218 2-83 (86)
61 cd02066 GRX_family Glutaredoxi 99.2 1E-10 2.2E-15 84.3 7.2 70 140-212 1-70 (72)
62 cd03418 GRX_GRXb_1_3_like Glut 99.2 1.1E-10 2.3E-15 86.8 7.3 72 140-214 1-73 (75)
63 PHA03050 glutaredoxin; Provisi 99.1 3.1E-10 6.8E-15 92.3 7.5 72 138-211 12-88 (108)
64 KOG4420 Uncharacterized conser 99.1 2.1E-10 4.5E-15 106.0 6.7 82 137-220 23-105 (325)
65 TIGR02196 GlrX_YruB Glutaredox 99.1 6.4E-10 1.4E-14 80.6 7.4 71 140-213 1-73 (74)
66 TIGR02181 GRX_bact Glutaredoxi 99.1 4.9E-10 1.1E-14 84.5 6.9 72 141-215 1-72 (79)
67 TIGR02189 GlrX-like_plant Glut 99.0 6.4E-10 1.4E-14 88.8 7.4 74 138-213 7-82 (99)
68 TIGR00365 monothiol glutaredox 99.0 1.4E-09 3.1E-14 86.5 7.9 74 138-214 11-89 (97)
69 TIGR02200 GlrX_actino Glutared 99.0 2.5E-09 5.4E-14 79.0 8.0 73 140-214 1-76 (77)
70 cd03419 GRX_GRXh_1_2_like Glut 99.0 1.9E-09 4.1E-14 81.1 7.3 74 140-215 1-76 (82)
71 cd03028 GRX_PICOT_like Glutare 99.0 2.4E-09 5.1E-14 83.8 7.6 74 138-214 7-85 (90)
72 PRK10329 glutaredoxin-like pro 98.9 2.1E-09 4.5E-14 83.0 6.8 71 139-213 1-73 (81)
73 cd03079 GST_N_Metaxin2 GST_N f 98.9 2.3E-09 5E-14 81.9 7.0 59 148-216 16-74 (74)
74 cd02976 NrdH NrdH-redoxin (Nrd 98.9 2.9E-09 6.2E-14 77.1 6.1 63 140-205 1-63 (73)
75 PF00462 Glutaredoxin: Glutare 98.9 1.2E-09 2.7E-14 78.5 3.8 60 141-203 1-60 (60)
76 TIGR02180 GRX_euk Glutaredoxin 98.9 7.4E-09 1.6E-13 77.8 7.1 73 141-215 1-77 (84)
77 TIGR02194 GlrX_NrdH Glutaredox 98.8 8.1E-09 1.8E-13 77.0 6.4 54 141-196 1-54 (72)
78 KOG3029 Glutathione S-transfer 98.8 9E-09 2E-13 96.3 7.9 74 138-217 88-161 (370)
79 PRK10824 glutaredoxin-4; Provi 98.8 1.3E-08 2.8E-13 84.0 7.6 74 138-214 14-92 (115)
80 KOG1695 Glutathione S-transfer 98.6 9.7E-08 2.1E-12 86.2 7.8 83 138-224 1-84 (206)
81 cd03078 GST_N_Metaxin1_like GS 98.5 4.5E-07 9.8E-12 68.6 7.6 58 148-216 15-72 (73)
82 cd03031 GRX_GRX_like Glutaredo 98.5 3.6E-07 7.8E-12 78.4 7.5 72 140-214 1-82 (147)
83 PRK12759 bifunctional gluaredo 98.5 3.6E-07 7.8E-12 90.0 7.9 70 138-211 1-79 (410)
84 PTZ00062 glutaredoxin; Provisi 98.5 4.5E-07 9.8E-12 81.7 7.9 74 137-213 111-189 (204)
85 KOG1752 Glutaredoxin and relat 98.4 7.2E-07 1.6E-11 72.5 7.6 76 137-214 12-89 (104)
86 KOG1422 Intracellular Cl- chan 98.4 9.3E-07 2E-11 79.7 8.3 74 147-224 19-92 (221)
87 PLN02907 glutamate-tRNA ligase 98.1 1.2E-05 2.5E-10 84.6 9.5 82 140-237 2-85 (722)
88 KOG4244 Failed axon connection 98.0 2.9E-05 6.3E-10 72.4 8.2 77 138-225 43-127 (281)
89 cd02973 TRX_GRX_like Thioredox 98.0 2.4E-05 5.2E-10 56.7 6.2 58 140-204 2-64 (67)
90 cd03036 ArsC_like Arsenate Red 97.9 1.1E-05 2.3E-10 65.6 4.3 50 141-191 1-50 (111)
91 COG0678 AHP1 Peroxiredoxin [Po 97.8 3.8E-06 8.3E-11 72.4 -0.1 38 89-135 100-137 (165)
92 cd02977 ArsC_family Arsenate R 97.7 4E-05 8.6E-10 61.2 4.7 47 141-188 1-47 (105)
93 PRK01655 spxA transcriptional 97.7 6.9E-05 1.5E-09 62.8 5.3 43 141-184 2-44 (131)
94 cd03030 GRX_SH3BGR Glutaredoxi 97.7 0.0002 4.2E-09 56.9 7.4 70 141-213 2-81 (92)
95 cd03032 ArsC_Spx Arsenate Redu 97.6 0.00011 2.5E-09 59.8 5.6 43 141-184 2-44 (115)
96 TIGR01617 arsC_related transcr 97.5 0.00014 3E-09 59.4 4.8 42 141-183 1-42 (117)
97 PRK12559 transcriptional regul 97.5 0.00023 5.1E-09 59.7 5.8 43 141-184 2-44 (131)
98 PRK13344 spxA transcriptional 97.4 0.00028 6.1E-09 59.3 5.9 43 141-184 2-44 (132)
99 cd03035 ArsC_Yffb Arsenate Red 97.4 0.00037 8E-09 56.3 5.4 43 141-184 1-43 (105)
100 cd03033 ArsC_15kD Arsenate Red 97.3 0.00047 1E-08 56.6 5.6 44 140-184 1-44 (113)
101 COG4545 Glutaredoxin-related p 97.2 0.00082 1.8E-08 51.8 5.7 65 139-204 2-77 (85)
102 PRK10026 arsenate reductase; P 97.2 0.0007 1.5E-08 57.9 5.8 45 138-183 1-45 (141)
103 COG1393 ArsC Arsenate reductas 97.1 0.00097 2.1E-08 55.2 5.7 45 139-184 1-45 (117)
104 COG0278 Glutaredoxin-related p 97.1 0.002 4.3E-08 52.2 6.7 73 138-213 14-92 (105)
105 TIGR00411 redox_disulf_1 small 97.0 0.0074 1.6E-07 44.7 8.7 54 140-196 2-59 (82)
106 TIGR01616 nitro_assoc nitrogen 96.9 0.0021 4.6E-08 53.7 5.7 43 140-183 2-44 (126)
107 PRK10853 putative reductase; P 96.8 0.0023 5E-08 52.8 5.3 43 141-184 2-44 (118)
108 TIGR00412 redox_disulf_2 small 96.8 0.0057 1.2E-07 46.1 6.9 56 139-203 1-60 (76)
109 PF05768 DUF836: Glutaredoxin- 96.7 0.012 2.6E-07 44.9 8.5 51 140-196 1-55 (81)
110 TIGR00014 arsC arsenate reduct 96.6 0.004 8.7E-08 50.8 5.4 43 141-184 1-43 (114)
111 cd03034 ArsC_ArsC Arsenate Red 96.6 0.0042 9E-08 50.5 5.4 37 141-177 1-37 (112)
112 PF10568 Tom37: Outer mitochon 96.4 0.011 2.3E-07 44.9 6.3 57 148-214 13-72 (72)
113 cd01659 TRX_superfamily Thiore 96.3 0.013 2.9E-07 38.6 5.6 54 141-196 1-59 (69)
114 cd03026 AhpF_NTD_C TRX-GRX-lik 96.2 0.015 3.2E-07 45.5 6.0 60 138-204 13-77 (89)
115 PF13192 Thioredoxin_3: Thiore 96.1 0.023 5.1E-07 42.7 6.7 57 139-204 1-61 (76)
116 PHA02125 thioredoxin-like prot 95.9 0.02 4.4E-07 42.8 5.3 51 141-196 2-52 (75)
117 KOG0911 Glutaredoxin-related p 95.8 0.026 5.7E-07 51.7 6.6 75 137-214 137-216 (227)
118 PF03960 ArsC: ArsC family; I 94.7 0.052 1.1E-06 43.7 4.5 33 144-176 1-33 (110)
119 PF11287 DUF3088: Protein of u 93.9 0.26 5.5E-06 40.7 6.9 69 148-220 23-110 (112)
120 PF04908 SH3BGR: SH3-binding, 93.7 0.21 4.5E-06 40.3 6.0 73 139-214 1-88 (99)
121 KOG2903 Predicted glutathione 93.3 0.42 9.1E-06 45.2 8.2 105 139-244 36-187 (319)
122 TIGR01295 PedC_BrcD bacterioci 93.0 0.45 9.7E-06 39.2 7.2 63 139-201 25-101 (122)
123 TIGR03140 AhpF alkyl hydropero 93.0 0.067 1.4E-06 54.0 2.7 72 138-216 118-198 (515)
124 cd02947 TRX_family TRX family; 92.8 0.47 1E-05 34.3 6.5 59 138-201 11-74 (93)
125 PRK15317 alkyl hydroperoxide r 92.8 0.076 1.6E-06 53.6 2.8 75 137-218 116-199 (517)
126 TIGR02187 GlrX_arch Glutaredox 92.3 0.31 6.7E-06 43.6 5.8 74 138-214 134-213 (215)
127 cd02975 PfPDO_like_N Pyrococcu 92.2 0.17 3.7E-06 40.8 3.7 52 140-196 24-81 (113)
128 TIGR03143 AhpF_homolog putativ 92.1 0.46 9.9E-06 48.6 7.5 59 138-203 477-540 (555)
129 cd02949 TRX_NTR TRX domain, no 91.8 0.63 1.4E-05 35.9 6.3 61 137-202 13-79 (97)
130 COG0435 ECM4 Predicted glutath 90.8 1 2.2E-05 42.9 7.7 105 137-242 48-187 (324)
131 cd03041 GST_N_2GST_N GST_N fam 89.7 0.12 2.6E-06 38.5 0.5 29 260-288 2-30 (77)
132 PF00085 Thioredoxin: Thioredo 89.4 3.1 6.7E-05 31.3 8.2 76 138-216 18-103 (103)
133 KOG3027 Mitochondrial outer me 87.3 2.7 5.9E-05 38.6 7.5 66 139-217 27-92 (257)
134 COG3011 Predicted thiol-disulf 87.0 3.8 8.2E-05 35.1 7.9 79 137-217 6-87 (137)
135 cd02950 TxlA TRX-like protein 86.5 7.7 0.00017 32.5 9.5 84 139-225 22-118 (142)
136 KOG2824 Glutaredoxin-related p 86.4 0.96 2.1E-05 42.8 4.3 73 139-214 131-213 (281)
137 TIGR01068 thioredoxin thioredo 86.3 1.2 2.6E-05 33.3 4.2 74 139-215 16-99 (101)
138 PRK10877 protein disulfide iso 86.2 1 2.2E-05 41.2 4.3 36 138-173 108-146 (232)
139 cd03020 DsbA_DsbC_DsbG DsbA fa 86.0 1.3 2.9E-05 38.7 4.9 37 137-173 77-115 (197)
140 cd02951 SoxW SoxW family; SoxW 85.9 2.9 6.3E-05 33.5 6.4 58 138-195 15-89 (125)
141 cd02953 DsbDgamma DsbD gamma f 85.6 2.8 6.1E-05 32.4 6.1 56 139-195 13-77 (104)
142 cd02984 TRX_PICOT TRX domain, 85.1 1 2.2E-05 34.1 3.3 60 139-201 16-79 (97)
143 PTZ00051 thioredoxin; Provisio 85.1 0.86 1.9E-05 34.6 2.9 58 139-201 20-82 (98)
144 PRK11657 dsbG disulfide isomer 84.8 1.7 3.6E-05 40.2 5.1 33 139-171 119-155 (251)
145 PRK09381 trxA thioredoxin; Pro 84.8 7.5 0.00016 30.2 8.2 61 139-202 23-87 (109)
146 cd03040 GST_N_mPGES2 GST_N fam 84.5 0.26 5.7E-06 36.2 -0.3 28 261-288 3-30 (77)
147 TIGR01126 pdi_dom protein disu 83.6 2.2 4.7E-05 32.2 4.5 55 137-194 13-73 (102)
148 PTZ00062 glutaredoxin; Provisi 83.3 14 0.00029 33.5 10.2 118 141-288 21-148 (204)
149 cd02996 PDI_a_ERp44 PDIa famil 83.0 5.4 0.00012 31.1 6.7 51 140-195 21-83 (108)
150 PRK10996 thioredoxin 2; Provis 82.6 8.6 0.00019 32.0 8.1 76 137-215 52-137 (139)
151 cd02993 PDI_a_APS_reductase PD 82.0 7.5 0.00016 30.6 7.2 57 137-195 21-83 (109)
152 TIGR02187 GlrX_arch Glutaredox 81.7 4.9 0.00011 35.8 6.7 77 138-217 20-111 (215)
153 PF04134 DUF393: Protein of un 81.3 3.3 7.2E-05 32.8 4.9 69 143-216 1-77 (114)
154 KOG3028 Translocase of outer m 81.0 15 0.00033 35.4 10.0 59 148-216 16-74 (313)
155 cd02963 TRX_DnaJ TRX domain, D 80.2 9.9 0.00021 30.1 7.4 59 138-201 25-90 (111)
156 PRK10638 glutaredoxin 3; Provi 80.1 0.51 1.1E-05 35.7 -0.2 30 260-289 4-33 (83)
157 cd02959 ERp19 Endoplasmic reti 79.3 5.8 0.00013 32.2 5.8 62 139-203 21-90 (117)
158 cd02989 Phd_like_TxnDC9 Phosdu 79.2 2 4.4E-05 34.6 3.1 63 137-204 22-89 (113)
159 cd02961 PDI_a_family Protein D 78.5 2.4 5.2E-05 31.3 3.1 54 139-195 17-76 (101)
160 PF13098 Thioredoxin_2: Thiore 78.0 2 4.4E-05 33.4 2.7 23 138-160 6-28 (112)
161 PF09635 MetRS-N: MetRS-N bind 77.6 1.5 3.3E-05 36.8 1.9 30 190-219 35-64 (122)
162 cd03027 GRX_DEP Glutaredoxin ( 77.3 0.66 1.4E-05 34.0 -0.3 29 261-289 4-32 (73)
163 cd02972 DsbA_family DsbA famil 76.6 3.1 6.6E-05 30.5 3.2 32 141-172 1-38 (98)
164 cd02997 PDI_a_PDIR PDIa family 76.0 12 0.00027 28.2 6.5 62 139-201 19-86 (104)
165 cd03037 GST_N_GRX2 GST_N famil 75.6 1.5 3.2E-05 31.7 1.2 28 261-288 2-29 (71)
166 cd03000 PDI_a_TMX3 PDIa family 74.3 4.7 0.0001 31.3 3.9 55 139-196 17-78 (104)
167 cd02985 TRX_CDSP32 TRX family, 74.1 12 0.00027 29.1 6.2 60 140-201 18-82 (103)
168 TIGR02194 GlrX_NrdH Glutaredox 73.7 1 2.2E-05 33.1 -0.1 28 262-289 3-30 (72)
169 cd02994 PDI_a_TMX PDIa family, 73.7 15 0.00032 28.0 6.5 54 140-196 19-77 (101)
170 cd02948 TRX_NDPK TRX domain, T 73.7 4.9 0.00011 31.3 3.8 59 139-201 19-82 (102)
171 cd02956 ybbN ybbN protein fami 73.1 19 0.0004 27.1 6.9 60 139-201 14-77 (96)
172 TIGR02190 GlrX-dom Glutaredoxi 72.7 1.4 3.1E-05 33.0 0.5 33 257-289 7-39 (79)
173 cd02955 SSP411 TRX domain, SSP 72.5 12 0.00027 30.9 6.1 66 141-206 19-97 (124)
174 cd03029 GRX_hybridPRX5 Glutare 71.1 1.2 2.6E-05 32.5 -0.3 30 260-289 3-32 (72)
175 PHA02278 thioredoxin-like prot 70.4 18 0.00039 28.8 6.4 64 138-202 15-84 (103)
176 cd03002 PDI_a_MPD1_like PDI fa 69.8 14 0.0003 28.4 5.6 53 140-195 21-79 (109)
177 PF13417 GST_N_3: Glutathione 69.6 0.8 1.7E-05 33.8 -1.5 27 262-288 1-27 (75)
178 PTZ00443 Thioredoxin domain-co 69.1 11 0.00023 34.6 5.4 78 139-219 54-141 (224)
179 cd03051 GST_N_GTT2_like GST_N 68.6 1.6 3.4E-05 31.1 -0.0 27 261-287 2-28 (74)
180 PF01323 DSBA: DSBA-like thior 68.2 5.8 0.00013 33.7 3.4 34 140-173 1-39 (193)
181 cd02066 GRX_family Glutaredoxi 67.8 1.4 3.1E-05 30.7 -0.4 29 261-289 3-31 (72)
182 cd03023 DsbA_Com1_like DsbA fa 67.4 5.6 0.00012 32.1 3.0 36 137-172 5-45 (154)
183 KOG2501 Thioredoxin, nucleored 67.2 15 0.00032 32.2 5.6 77 139-225 34-119 (157)
184 cd02999 PDI_a_ERp44_like PDIa 67.1 4.4 9.5E-05 31.8 2.2 52 140-195 21-77 (100)
185 cd03019 DsbA_DsbA DsbA family, 67.1 8.1 0.00018 32.3 4.0 36 137-172 15-56 (178)
186 cd03004 PDI_a_ERdj5_C PDIa fam 66.9 12 0.00025 28.7 4.6 52 139-195 21-78 (104)
187 cd02957 Phd_like Phosducin (Ph 66.8 5.3 0.00012 31.7 2.7 61 139-203 26-89 (113)
188 PF14595 Thioredoxin_9: Thiore 65.8 1.7 3.7E-05 36.3 -0.4 58 137-196 41-103 (129)
189 cd02954 DIM1 Dim1 family; Dim1 65.5 6.5 0.00014 32.4 3.0 60 140-202 17-80 (114)
190 PF13728 TraF: F plasmid trans 65.5 30 0.00065 31.3 7.6 111 89-199 63-194 (215)
191 cd02952 TRP14_like Human TRX-r 64.7 35 0.00076 28.1 7.2 59 147-205 38-105 (119)
192 cd03418 GRX_GRXb_1_3_like Glut 64.6 2 4.4E-05 31.1 -0.1 29 261-289 3-31 (75)
193 COG3019 Predicted metal-bindin 62.9 17 0.00036 31.5 5.0 75 137-218 24-105 (149)
194 cd02998 PDI_a_ERp38 PDIa famil 62.7 6.2 0.00013 29.8 2.3 55 139-195 20-80 (105)
195 PTZ00102 disulphide isomerase; 62.4 43 0.00093 32.8 8.7 80 137-219 49-140 (477)
196 cd03052 GST_N_GDAP1 GST_N fami 62.3 2.4 5.3E-05 31.3 -0.1 28 261-288 2-29 (73)
197 cd03003 PDI_a_ERdj5_N PDIa fam 62.3 12 0.00026 28.7 3.8 54 139-195 20-77 (101)
198 cd03059 GST_N_SspA GST_N famil 62.1 3.3 7.2E-05 29.6 0.6 27 262-288 3-29 (73)
199 PRK03147 thiol-disulfide oxido 62.1 39 0.00084 28.2 7.2 20 140-159 64-83 (173)
200 cd03021 DsbA_GSTK DsbA family, 61.5 12 0.00025 33.1 4.1 33 139-171 1-37 (209)
201 cd00570 GST_N_family Glutathio 61.1 3.3 7.1E-05 28.2 0.4 27 262-288 3-29 (71)
202 PRK00293 dipZ thiol:disulfide 60.9 49 0.0011 34.3 9.1 75 140-215 477-568 (571)
203 TIGR01130 ER_PDI_fam protein d 60.5 51 0.0011 31.8 8.7 76 139-219 20-111 (462)
204 cd03022 DsbA_HCCA_Iso DsbA fam 60.4 11 0.00023 32.1 3.6 31 141-171 1-35 (192)
205 TIGR02740 TraF-like TraF-like 59.8 43 0.00093 31.4 7.8 106 90-195 110-234 (271)
206 PRK10329 glutaredoxin-like pro 59.6 2.7 5.8E-05 32.1 -0.3 29 261-289 4-32 (81)
207 cd03001 PDI_a_P5 PDIa family, 59.3 34 0.00073 25.7 5.9 53 140-195 21-77 (103)
208 KOG0190 Protein disulfide isom 59.0 35 0.00075 35.1 7.4 79 140-221 45-136 (493)
209 cd03060 GST_N_Omega_like GST_N 58.7 4.1 8.9E-05 29.4 0.6 28 261-288 2-29 (71)
210 cd03047 GST_N_2 GST_N family, 58.4 2.9 6.2E-05 30.4 -0.3 28 261-288 2-29 (73)
211 cd03053 GST_N_Phi GST_N family 58.0 3.2 7E-05 30.1 -0.1 28 261-288 3-30 (76)
212 TIGR02661 MauD methylamine deh 57.9 37 0.00079 29.6 6.6 30 140-169 77-110 (189)
213 PF13462 Thioredoxin_4: Thiore 57.4 10 0.00022 31.2 2.8 37 137-173 12-56 (162)
214 cd03005 PDI_a_ERp46 PDIa famil 57.0 7.9 0.00017 29.2 2.0 53 140-195 19-78 (102)
215 PRK13728 conjugal transfer pro 57.0 26 0.00057 31.2 5.5 31 141-171 73-107 (181)
216 cd03045 GST_N_Delta_Epsilon GS 56.7 3 6.4E-05 30.0 -0.5 28 261-288 2-29 (74)
217 cd02967 mauD Methylamine utili 56.5 15 0.00033 28.4 3.6 71 141-225 25-99 (114)
218 cd03024 DsbA_FrnE DsbA family, 55.5 14 0.00031 31.7 3.5 31 141-171 1-39 (201)
219 cd03055 GST_N_Omega GST_N fami 55.2 3.8 8.3E-05 31.3 -0.1 31 258-288 17-47 (89)
220 TIGR02181 GRX_bact Glutaredoxi 54.1 4.1 8.8E-05 30.0 -0.1 28 262-289 3-30 (79)
221 TIGR02738 TrbB type-F conjugat 53.6 66 0.0014 27.5 7.3 32 140-171 53-88 (153)
222 TIGR02189 GlrX-like_plant Glut 53.5 4.3 9.4E-05 32.1 -0.0 33 257-289 7-39 (99)
223 cd03058 GST_N_Tau GST_N family 53.5 4.1 8.9E-05 29.5 -0.1 26 262-287 3-28 (74)
224 PLN02309 5'-adenylylsulfate re 53.4 72 0.0016 32.4 8.6 59 136-196 364-428 (457)
225 cd03419 GRX_GRXh_1_2_like Glut 53.2 4 8.6E-05 29.9 -0.3 28 261-288 3-30 (82)
226 cd03011 TlpA_like_ScsD_MtbDsbE 53.0 32 0.0007 26.9 5.0 57 139-196 22-80 (123)
227 PHA03075 glutaredoxin-like pro 52.9 17 0.00037 30.4 3.4 34 138-171 2-35 (123)
228 cd03010 TlpA_like_DsbE TlpA-li 52.8 55 0.0012 25.9 6.4 22 140-161 28-49 (127)
229 cd02970 PRX_like2 Peroxiredoxi 52.6 32 0.00068 27.7 5.0 51 146-197 33-88 (149)
230 cd03056 GST_N_4 GST_N family, 52.1 4.2 9.1E-05 28.9 -0.3 28 261-288 2-29 (73)
231 PF00462 Glutaredoxin: Glutare 51.4 4 8.6E-05 28.6 -0.5 27 263-289 4-30 (60)
232 cd02976 NrdH NrdH-redoxin (Nrd 50.9 4.9 0.00011 28.1 -0.1 28 261-288 3-30 (73)
233 cd03006 PDI_a_EFP1_N PDIa fami 50.7 15 0.00033 29.8 2.8 57 136-195 28-89 (113)
234 cd02995 PDI_a_PDI_a'_C PDIa fa 50.2 16 0.00034 27.5 2.7 53 139-195 20-78 (104)
235 TIGR02196 GlrX_YruB Glutaredox 49.9 5.2 0.00011 28.0 -0.1 29 261-289 3-31 (74)
236 cd03065 PDI_b_Calsequestrin_N 49.5 96 0.0021 25.5 7.4 72 140-216 30-118 (120)
237 COG2761 FrnE Predicted dithiol 49.4 24 0.00052 32.6 4.1 30 137-166 4-37 (225)
238 KOG0910 Thioredoxin-like prote 48.6 36 0.00078 29.6 4.8 68 133-203 57-128 (150)
239 cd03009 TryX_like_TryX_NRX Try 48.0 70 0.0015 25.5 6.3 20 141-160 22-41 (131)
240 cd03048 GST_N_Ure2p_like GST_N 47.7 5.8 0.00013 29.3 -0.1 27 261-288 3-29 (81)
241 cd03025 DsbA_FrnE_like DsbA fa 47.6 28 0.00061 29.6 4.1 32 140-171 2-39 (193)
242 TIGR00424 APS_reduc 5'-adenyly 47.1 90 0.0019 31.8 8.2 54 139-195 373-433 (463)
243 TIGR00365 monothiol glutaredox 47.1 5.9 0.00013 31.2 -0.2 23 266-288 25-47 (97)
244 cd02965 HyaE HyaE family; HyaE 46.2 19 0.00042 29.5 2.7 65 137-204 27-97 (111)
245 cd02962 TMX2 TMX2 family; comp 46.2 21 0.00046 30.6 3.1 60 140-204 50-122 (152)
246 COG2143 Thioredoxin-related pr 45.8 63 0.0014 28.7 5.9 78 138-217 43-152 (182)
247 cd02987 Phd_like_Phd Phosducin 45.6 22 0.00047 31.1 3.1 59 141-203 87-148 (175)
248 PF08534 Redoxin: Redoxin; In 45.1 33 0.00072 27.8 4.0 52 142-196 33-92 (146)
249 cd05295 MDH_like Malate dehydr 44.3 37 0.0008 34.4 4.9 73 147-220 2-88 (452)
250 COG3118 Thioredoxin domain-con 43.9 46 0.001 32.1 5.2 80 137-219 43-132 (304)
251 cd02964 TryX_like_family Trypa 43.6 66 0.0014 25.9 5.6 19 141-159 21-39 (132)
252 cd03076 GST_N_Pi GST_N family, 43.3 7.1 0.00015 28.5 -0.3 29 260-288 2-30 (73)
253 cd03049 GST_N_3 GST_N family, 43.0 13 0.00027 26.8 1.1 27 262-288 3-31 (73)
254 PRK13703 conjugal pilus assemb 42.9 1.1E+02 0.0024 28.6 7.5 111 90-200 87-218 (248)
255 cd03008 TryX_like_RdCVF Trypar 42.6 94 0.002 26.5 6.5 75 141-225 29-116 (146)
256 cd03028 GRX_PICOT_like Glutare 41.9 8.3 0.00018 29.7 -0.1 24 266-289 21-44 (90)
257 cd03054 GST_N_Metaxin GST_N fa 41.5 23 0.0005 25.4 2.3 22 267-288 15-36 (72)
258 COG0695 GrxC Glutaredoxin and 41.4 8.1 0.00017 29.4 -0.2 28 261-288 4-31 (80)
259 KOG3425 Uncharacterized conser 41.4 75 0.0016 26.9 5.5 70 147-216 43-122 (128)
260 KOG3029 Glutathione S-transfer 41.4 8 0.00017 37.2 -0.3 31 258-288 89-119 (370)
261 TIGR02200 GlrX_actino Glutared 41.0 11 0.00023 27.0 0.4 28 262-289 4-31 (77)
262 TIGR02739 TraF type-F conjugat 40.9 62 0.0013 30.4 5.5 111 90-200 94-225 (256)
263 cd03050 GST_N_Theta GST_N fami 40.3 10 0.00022 27.6 0.2 28 261-288 2-29 (76)
264 COG5494 Predicted thioredoxin/ 39.4 56 0.0012 30.4 4.8 74 137-216 9-87 (265)
265 PTZ00056 glutathione peroxidas 39.2 73 0.0016 28.2 5.6 74 141-217 43-129 (199)
266 cd02958 UAS UAS family; UAS is 38.9 1.4E+02 0.0029 23.5 6.6 53 141-194 21-80 (114)
267 KOG0541 Alkyl hydroperoxide re 38.3 12 0.00025 33.0 0.3 36 91-135 108-143 (171)
268 PRK15412 thiol:disulfide inter 37.7 71 0.0015 27.6 5.2 55 140-196 71-129 (185)
269 cd03080 GST_N_Metaxin_like GST 37.1 31 0.00067 25.1 2.4 22 267-288 16-37 (75)
270 PHA03050 glutaredoxin; Provisi 36.7 11 0.00024 30.5 -0.1 31 258-288 13-46 (108)
271 PTZ00102 disulphide isomerase; 36.2 50 0.0011 32.4 4.4 77 139-218 377-466 (477)
272 cd02992 PDI_a_QSOX PDIa family 36.2 87 0.0019 24.9 5.1 55 139-196 21-84 (114)
273 cd03038 GST_N_etherase_LigE GS 33.8 31 0.00068 25.5 2.0 22 267-288 15-36 (84)
274 TIGR01626 ytfJ_HI0045 conserve 33.2 1.4E+02 0.0029 26.6 6.2 52 116-171 38-102 (184)
275 PRK11200 grxA glutaredoxin 1; 33.1 12 0.00026 28.1 -0.4 29 261-289 4-37 (85)
276 PF06110 DUF953: Eukaryotic pr 32.7 1.2E+02 0.0026 25.2 5.4 60 147-208 36-107 (119)
277 cd02971 PRX_family Peroxiredox 32.0 71 0.0015 25.4 4.0 56 140-197 24-88 (140)
278 cd03042 GST_N_Zeta GST_N famil 31.4 21 0.00045 25.3 0.6 27 262-288 3-29 (73)
279 PF00578 AhpC-TSA: AhpC/TSA fa 30.5 52 0.0011 25.5 2.9 50 147-197 36-90 (124)
280 cd02966 TlpA_like_family TlpA- 30.3 55 0.0012 24.1 2.9 23 139-161 21-43 (116)
281 TIGR00385 dsbE periplasmic pro 29.9 1E+02 0.0022 26.2 4.8 22 140-161 66-87 (173)
282 cd03044 GST_N_EF1Bgamma GST_N 29.8 24 0.00053 25.6 0.8 27 262-288 3-29 (75)
283 cd03018 PRX_AhpE_like Peroxire 29.5 94 0.002 25.1 4.4 50 146-196 38-92 (149)
284 smart00594 UAS UAS domain. 29.3 2.9E+02 0.0063 22.1 7.2 58 139-200 29-98 (122)
285 cd03017 PRX_BCP Peroxiredoxin 28.7 75 0.0016 25.3 3.6 48 147-197 34-88 (140)
286 cd02982 PDI_b'_family Protein 28.7 64 0.0014 24.3 3.0 55 139-196 14-74 (103)
287 cd02986 DLP Dim1 family, Dim1- 27.7 69 0.0015 26.5 3.2 52 141-195 18-73 (114)
288 cd03007 PDI_a_ERp29_N PDIa fam 27.4 3.4E+02 0.0073 22.3 7.2 81 136-216 17-115 (116)
289 cd03039 GST_N_Sigma_like GST_N 26.6 23 0.0005 25.3 0.2 27 262-288 3-29 (72)
290 cd04911 ACT_AKiii-YclM-BS_1 AC 25.7 65 0.0014 24.7 2.5 22 150-171 16-37 (76)
291 TIGR02180 GRX_euk Glutaredoxin 25.6 33 0.00073 24.8 0.9 26 263-288 4-31 (84)
292 TIGR02183 GRXA Glutaredoxin, G 24.6 25 0.00055 26.7 0.1 21 262-282 4-24 (86)
293 cd02960 AGR Anterior Gradient 24.0 72 0.0016 26.9 2.7 21 138-158 24-44 (130)
294 KOG0907 Thioredoxin [Posttrans 23.9 59 0.0013 26.2 2.1 55 142-201 26-85 (106)
295 cd00340 GSH_Peroxidase Glutath 23.6 1.1E+02 0.0024 25.3 3.8 20 141-161 26-45 (152)
296 TIGR03759 conj_TIGR03759 integ 23.6 2.2E+02 0.0047 26.0 5.8 37 136-172 107-143 (200)
297 PF06053 DUF929: Domain of unk 23.6 54 0.0012 30.7 2.0 21 141-161 62-82 (249)
298 PF13899 Thioredoxin_7: Thiore 23.5 62 0.0013 24.0 2.0 20 140-159 20-39 (82)
299 COG0526 TrxA Thiol-disulfide i 22.7 71 0.0015 22.9 2.2 18 145-162 40-57 (127)
300 cd02988 Phd_like_VIAF Phosduci 22.4 67 0.0015 28.5 2.3 56 141-202 106-164 (192)
301 PF06953 ArsD: Arsenical resis 21.6 1.3E+02 0.0029 25.1 3.8 75 138-214 1-99 (123)
302 cd03061 GST_N_CLIC GST_N famil 20.9 71 0.0015 25.2 1.9 22 267-288 21-42 (91)
303 COG5515 Uncharacterized conser 20.9 69 0.0015 24.0 1.7 23 139-161 1-27 (70)
304 PF11823 DUF3343: Protein of u 20.0 1.7E+02 0.0037 21.5 3.8 33 141-173 3-35 (73)
No 1
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.78 E-value=5e-19 Score=133.98 Aligned_cols=76 Identities=58% Similarity=1.143 Sum_probs=68.5
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHHhhc
Q 022996 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKY 217 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~~~y 217 (289)
++||+++.||||+||+++|.++||+|+.+++.. +++..++++++||.++||+|++.++|.+|+||.+|++||+++|
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~-~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPK-GSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCC-ChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 799999999999999999999999999999854 3445789999999999999998545789999999999999876
No 2
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.72 E-value=2.7e-17 Score=121.97 Aligned_cols=73 Identities=29% Similarity=0.557 Sum_probs=66.8
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcC-CCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHHh
Q 022996 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~-~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~~ 215 (289)
++||+++.||+|++++++|+++|++|+.+.+. .++++..++|.++||.++||+|++ +|.+|+||.||++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD--NGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEE--CCEEEEcHHHHHHHHhC
Confidence 58999999999999999999999999999985 345567799999999999999998 78999999999999974
No 3
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.70 E-value=5.3e-17 Score=122.34 Aligned_cols=72 Identities=18% Similarity=0.314 Sum_probs=65.7
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcC-CCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHH
Q 022996 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~-~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~ 214 (289)
++||+++.||+|++|+++|+++|++|+.+.+. ..+++..++|.++||.++||+|++ +|.+|+||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~--~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIH--GDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 48999999999999999999999999999884 344566789999999999999998 8999999999999995
No 4
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.70 E-value=7.4e-17 Score=119.14 Aligned_cols=73 Identities=21% Similarity=0.353 Sum_probs=66.6
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHHhhc
Q 022996 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKY 217 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~~~y 217 (289)
|+||+.+.||+|++++++|+++|++|+.+.+... +..++|+++||.++||+|++ +|..|+||.+|++||+++|
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~--~~~~~~~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPD--NPPEDLAELNPYGTVPTLVD--RDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCC--CCCHHHHhhCCCCCCCEEEE--CCEEEEcHHHHHHHHHhhC
Confidence 5899999999999999999999999999988532 44689999999999999998 7899999999999999875
No 5
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.69 E-value=6.6e-17 Score=121.60 Aligned_cols=73 Identities=27% Similarity=0.523 Sum_probs=67.3
Q ss_pred EEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHHhhcCC
Q 022996 143 IYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGD 219 (289)
Q Consensus 143 LY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~~~y~~ 219 (289)
||++.+||||+||+++|.++||+|+.+.+... ..+++|.++||.++||+|++ +|.+|+||.+|++||+++|+.
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~--~~~~~~~~~~p~~~vPvL~~--~g~~l~dS~~I~~yL~~~~~~ 73 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPE--EKRPEFLKLNPKGKVPVLVD--DGEVLTDSAAIIEYLEERYPG 73 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTT--STSHHHHHHSTTSBSSEEEE--TTEEEESHHHHHHHHHHHSTS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcc--cchhHHHhhcccccceEEEE--CCEEEeCHHHHHHHHHHHcCC
Confidence 89999999999999999999999999998532 23689999999999999997 899999999999999999975
No 6
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.67 E-value=2e-16 Score=116.33 Aligned_cols=73 Identities=25% Similarity=0.354 Sum_probs=64.8
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcC-CCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHH
Q 022996 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~-~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~ 214 (289)
++||+++.||+|+|++++|+++|++|+.+.+. ..+.+..++|.++||.++||+|+++ +|..|+||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~-~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELD-DGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeC-CCCEEecHHHHHHHhC
Confidence 58999999999999999999999999999885 3344557899999999999999853 7789999999999985
No 7
>PRK15113 glutathione S-transferase; Provisional
Probab=99.67 E-value=3.2e-16 Score=139.11 Aligned_cols=99 Identities=14% Similarity=0.196 Sum_probs=82.8
Q ss_pred CCeEEEEcC--CCccHHHHHHHHHHcCCCeEEEEcC-CCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHHh
Q 022996 139 KPIEIYEYE--SCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (289)
Q Consensus 139 ~~itLY~~~--~cP~CrkVr~aL~e~gI~ye~~~V~-~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~~ 215 (289)
++++||+.+ .||+|++|+++|+++||+|+.+.++ .++++..++|+++||.|+||+|++ +|.+|+||.+|++||++
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~--~~~~l~ES~aI~~YL~~ 81 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQH--DDFELSESSAIAEYLEE 81 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEE--CCEEEecHHHHHHHHHH
Confidence 348999976 6999999999999999999999985 345667799999999999999998 88999999999999999
Q ss_pred hcCCC----CCCccc-chhhhhhHHhHHH
Q 022996 216 KYGDG----SVPFML-SLGLLTTLTEGFA 239 (289)
Q Consensus 216 ~y~~~----~~P~~l-~~~~~~~~~~~~a 239 (289)
+|+.. .+|.+. .++++...+.|.+
T Consensus 82 ~~~~~~~~~l~p~~~~~ra~~~~~~~~~~ 110 (214)
T PRK15113 82 RFAPPAWERIYPADLQARARARQIQAWLR 110 (214)
T ss_pred HcCCCCccccCCCCHHHHHHHHHHHHHHH
Confidence 99753 567554 3466666666664
No 8
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.67 E-value=2.6e-16 Score=115.84 Aligned_cols=72 Identities=24% Similarity=0.429 Sum_probs=65.9
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcC-CCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHH
Q 022996 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~-~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~ 214 (289)
++||+++.||+|++++++|+++|++|+.+.+. ..+++..++|.++||.++||+|++ +|.+|.||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLEL--DGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 58999999999999999999999999999985 345567899999999999999998 7899999999999984
No 9
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.66 E-value=4.1e-16 Score=118.27 Aligned_cols=79 Identities=29% Similarity=0.468 Sum_probs=68.8
Q ss_pred CeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcC-CCCCCChhHHHhhCCCCcccEEEECC-CCccccChHHHHHHHHhhc
Q 022996 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPN-TGVSMYESDNIIKYLVGKY 217 (289)
Q Consensus 140 ~itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~-~~~~~~~~e~~~inp~~tVP~Lvd~n-~G~~I~ES~aIi~YL~~~y 217 (289)
+++||+++. |+|++|+++|+++|++|+.+.+. ..+.+.+++|+++||.++||+|++.+ +|..|+||.+|++||+++|
T Consensus 1 ~~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~ 79 (81)
T cd03048 1 MITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEKY 79 (81)
T ss_pred CeEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHHh
Confidence 379999986 99999999999999999999885 23456678999999999999999831 1889999999999999998
Q ss_pred CC
Q 022996 218 GD 219 (289)
Q Consensus 218 ~~ 219 (289)
+.
T Consensus 80 ~~ 81 (81)
T cd03048 80 DK 81 (81)
T ss_pred CC
Confidence 63
No 10
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.66 E-value=3.7e-16 Score=116.65 Aligned_cols=74 Identities=23% Similarity=0.350 Sum_probs=66.9
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcC-CCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHHhh
Q 022996 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGK 216 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~-~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~~~ 216 (289)
++||+++.||+|++++++|+++|++|+.+.+. ..+++..++|.++||.++||+|++ +|..|+||.+|++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~--~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALED--GDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEE--CCEEEEcHHHHHHHHhhC
Confidence 79999999999999999999999999999885 334456789999999999999998 789999999999999864
No 11
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.65 E-value=4.8e-16 Score=116.54 Aligned_cols=75 Identities=21% Similarity=0.345 Sum_probs=67.9
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcC-CCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHHhhc
Q 022996 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKY 217 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~-~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~~~y 217 (289)
++||+++.|++|++++++|+++|++|+.+.+. .++++..++|.++||.++||+|++ +|.+|+||.+|++||+++|
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~--~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVD--GDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEE--CCEEEEcHHHHHHHHHhhC
Confidence 57999999999999999999999999999885 334556689999999999999998 7899999999999999875
No 12
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.65 E-value=5.3e-16 Score=115.74 Aligned_cols=73 Identities=21% Similarity=0.296 Sum_probs=65.6
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCC-CcccEEEECCCCccccChHHHHHHHHhhc
Q 022996 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGK-KQFPYMVDPNTGVSMYESDNIIKYLVGKY 217 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~-~tVP~Lvd~n~G~~I~ES~aIi~YL~~~y 217 (289)
|+||++..||+|+|++++|+++|++|+.+.+... ++.++|+++||. ++||+|++ +|.+++||.+|++||+++|
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~--~~~~~~~~~~p~~~~vP~l~~--~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLG--NKSELLLASNPVHKKIPVLLH--NGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcc--cCCHHHHHhCCCCCCCCEEEE--CCEEeehHHHHHHHHHhhC
Confidence 5899999999999999999999999999987432 446889999995 99999998 7899999999999999875
No 13
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=99.64 E-value=9.1e-16 Score=135.92 Aligned_cols=83 Identities=18% Similarity=0.349 Sum_probs=74.0
Q ss_pred CeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHHhhcCC
Q 022996 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGD 219 (289)
Q Consensus 140 ~itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~~~y~~ 219 (289)
+++||+++.||+|++|+++|+++|++|+.+.++. .++.++|+++||.|+||+|++ +|.+|+||.||++||+++|+.
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~--~~~~~~~~~~nP~g~VPvL~~--~g~~l~ES~AIl~YL~~~~~~ 85 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEK--DNLPQDLIDLNPYQSVPTLVD--RELTLYESRIIMEYLDERFPH 85 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCc--ccCCHHHHHhCCCCCCCEEEE--CCEEeeCHHHHHHHHHHhCCC
Confidence 4899999999999999999999999999999864 345689999999999999998 899999999999999999975
Q ss_pred C-CCCccc
Q 022996 220 G-SVPFML 226 (289)
Q Consensus 220 ~-~~P~~l 226 (289)
. .+|.+.
T Consensus 86 ~~l~p~~~ 93 (211)
T PRK09481 86 PPLMPVYP 93 (211)
T ss_pred CCCCCCCH
Confidence 4 566543
No 14
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=9.9e-16 Score=135.14 Aligned_cols=85 Identities=24% Similarity=0.358 Sum_probs=75.3
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHHhhcCCC
Q 022996 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGDG 220 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~~~y~~~ 220 (289)
++||+.+.||+|+||+++|.++|++|+.+.+....++..++|+++||.++||+|+++ +|.+|+||.+|++||+++|+..
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~-~~~~l~ES~AI~~YL~~~~~~~ 79 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDD-DGEVLTESGAILEYLAERYPGP 79 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCCCEEeeC-CCCeeecHHHHHHHHHhhCCCC
Confidence 589999999999999999999999999999964335667999999999999999984 4449999999999999999887
Q ss_pred -CCCccc
Q 022996 221 -SVPFML 226 (289)
Q Consensus 221 -~~P~~l 226 (289)
.+|.+.
T Consensus 80 ~l~p~~~ 86 (211)
T COG0625 80 PLLPADP 86 (211)
T ss_pred CcCCCCc
Confidence 788765
No 15
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.63 E-value=8e-16 Score=113.89 Aligned_cols=71 Identities=30% Similarity=0.524 Sum_probs=61.0
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHHh
Q 022996 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~~ 215 (289)
++||++..||||+|||++|.++|++|+.+.+... . .....+.+|.++||+|++. +|.+|+||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~-~--~~~~~~~~~~~~vP~L~~~-~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQND-D--EATPIRMIGAKQVPILEKD-DGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCC-c--hHHHHHhcCCCccCEEEeC-CCeEeehHHHHHHHHhC
Confidence 5799999999999999999999999999987532 2 1345678999999999872 48899999999999974
No 16
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.63 E-value=1.4e-15 Score=114.13 Aligned_cols=75 Identities=25% Similarity=0.449 Sum_probs=63.1
Q ss_pred CeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECC--CCccccChHHHHHHHHhhc
Q 022996 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPN--TGVSMYESDNIIKYLVGKY 217 (289)
Q Consensus 140 ~itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n--~G~~I~ES~aIi~YL~~~y 217 (289)
+++||+++.||||+||+++|.++||+|+.+.+.. ...+++ +.+|.++||+|++.+ +|.+|+||.+|++||+++.
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~---~~~~~~-~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~ 76 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNP---VSRKEI-KWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTYL 76 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCc---hhHHHH-HHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHHc
Confidence 4899999999999999999999999999998742 123444 679999999999732 3789999999999999875
Q ss_pred C
Q 022996 218 G 218 (289)
Q Consensus 218 ~ 218 (289)
+
T Consensus 77 ~ 77 (77)
T cd03040 77 G 77 (77)
T ss_pred C
Confidence 3
No 17
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.62 E-value=1.7e-15 Score=112.46 Aligned_cols=69 Identities=20% Similarity=0.376 Sum_probs=62.1
Q ss_pred EEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHH
Q 022996 142 EIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYL 213 (289)
Q Consensus 142 tLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL 213 (289)
+||++..||||+||+++|+++|++|+.+.+... +..++|+++||.++||+|++. +|..|+||.+|++|+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~--~~~~~~~~~np~~~vP~L~~~-~g~~l~eS~aI~~y~ 70 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELK--NKPAEMLAASPKGTVPVLVLG-NGTVIEESLDIMRWA 70 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCC--CCCHHHHHHCCCCCCCEEEEC-CCcEEecHHHHHHhh
Confidence 799999999999999999999999999998542 235799999999999999873 588999999999997
No 18
>PLN02473 glutathione S-transferase
Probab=99.62 E-value=2.5e-15 Score=132.45 Aligned_cols=97 Identities=16% Similarity=0.167 Sum_probs=80.4
Q ss_pred CeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcC-CCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHHhhcC
Q 022996 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYG 218 (289)
Q Consensus 140 ~itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~-~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~~~y~ 218 (289)
.++||+++.||+|+||+++|.++||+|+.+.++ .++++.+++++++||.++||+|++ +|.+|+||.+|++||+++|+
T Consensus 2 ~~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~--~g~~l~ES~aI~~YL~~~~~ 79 (214)
T PLN02473 2 VVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIED--GDLKLFESRAIARYYATKYA 79 (214)
T ss_pred ceEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEE--CCEEEEehHHHHHHHHHHcC
Confidence 589999999999999999999999999999884 445677899999999999999998 88999999999999999996
Q ss_pred C---CCCCccc-chhhhhhHHhHH
Q 022996 219 D---GSVPFML-SLGLLTTLTEGF 238 (289)
Q Consensus 219 ~---~~~P~~l-~~~~~~~~~~~~ 238 (289)
. ..+|.+. .++++.....|.
T Consensus 80 ~~~~~l~p~~~~~ra~~~~~~~~~ 103 (214)
T PLN02473 80 DQGTDLLGKTLEHRAIVDQWVEVE 103 (214)
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHH
Confidence 4 3566543 234444444444
No 19
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.62 E-value=2e-15 Score=113.33 Aligned_cols=73 Identities=22% Similarity=0.300 Sum_probs=65.8
Q ss_pred EEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHHh
Q 022996 142 EIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (289)
Q Consensus 142 tLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~~ 215 (289)
+||+++.||+|++++++|+++|++|+.+.+....++..++|+++||.++||+|+++ +|.+|+||.+|++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~-~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGA-DGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcC-CCCEEeeHHHHHHHHhh
Confidence 79999999999999999999999999999864334667899999999999999973 58899999999999975
No 20
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.61 E-value=3.4e-15 Score=111.97 Aligned_cols=76 Identities=20% Similarity=0.201 Sum_probs=66.6
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcC-CCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHHhhcC
Q 022996 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYG 218 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~-~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~~~y~ 218 (289)
++||+++.| +|++|+++|+++|++|+.+.+. .++++..++|+++||.++||+|+++ +|..|+||.+|++||+++|+
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~-~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLD-DGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEEC-CCcEEEcHHHHHHHHHHhCc
Confidence 589999976 5999999999999999999884 3445667899999999999999982 48999999999999999874
No 21
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.60 E-value=3.6e-15 Score=111.07 Aligned_cols=72 Identities=24% Similarity=0.314 Sum_probs=64.9
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcC-CCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHH
Q 022996 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~-~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~ 214 (289)
++||+++.||+|++|+++|+++|++|+.+.+. ..+++..++|+++||.++||+|++ +|..|+||.+|++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~--~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLED--GDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEE--CCEEEECHHHHHHHhC
Confidence 58999999999999999999999999999884 334456789999999999999998 8899999999999984
No 22
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.60 E-value=1.3e-14 Score=128.65 Aligned_cols=97 Identities=24% Similarity=0.336 Sum_probs=76.8
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcC-CCCCCChhHHHhhCCCCcccEEEEC---CCC--ccccChHHHHHHHH
Q 022996 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDP---NTG--VSMYESDNIIKYLV 214 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~-~~~~~~~~e~~~inp~~tVP~Lvd~---n~G--~~I~ES~aIi~YL~ 214 (289)
++||+.+ +++|++|+++|+++||+|+.+.++ .+++++.++|+++||.|+||+|++. ++| .+|+||.||++||+
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL~ 80 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYLA 80 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHHH
Confidence 7999887 799999999999999999999984 4456677999999999999999973 255 47999999999999
Q ss_pred hhcCCCCCCccc-chhhhhhHHhHHH
Q 022996 215 GKYGDGSVPFML-SLGLLTTLTEGFA 239 (289)
Q Consensus 215 ~~y~~~~~P~~l-~~~~~~~~~~~~a 239 (289)
++|+. ..|.+. .++++...+.|..
T Consensus 81 ~~~~~-l~p~~~~~ra~~~~~~~~~~ 105 (215)
T PRK13972 81 EKTGL-FLSHETRERAATLQWLFWQV 105 (215)
T ss_pred HhcCC-CCCCCHHHHHHHHHHHHHHh
Confidence 99863 445433 3455444445543
No 23
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.59 E-value=5.9e-15 Score=114.81 Aligned_cols=77 Identities=21% Similarity=0.300 Sum_probs=67.0
Q ss_pred CCCCCCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHH
Q 022996 135 PRPEKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (289)
Q Consensus 135 ~~~~~~itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~ 214 (289)
+...+.++||+++.||+|++|+++|.++|++|+.+.+... +..++|.++||.++||+|++. +|.+|+||.+|++||+
T Consensus 13 ~~~~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~--~~~~~~~~~np~~~vPvL~~~-~g~~l~eS~aI~~yLe 89 (89)
T cd03055 13 PPVPGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLK--DKPDWFLEKNPQGKVPALEID-EGKVVYESLIICEYLD 89 (89)
T ss_pred CCCCCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCC--CCcHHHHhhCCCCCcCEEEEC-CCCEEECHHHHHHhhC
Confidence 3456789999999999999999999999999999998532 234679999999999999972 4899999999999985
No 24
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.59 E-value=5e-15 Score=109.13 Aligned_cols=72 Identities=25% Similarity=0.386 Sum_probs=65.4
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcC-CCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHH
Q 022996 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~-~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~ 214 (289)
++||++..|++|++++++|.++|++|+.+.+. .++.+..++|.++||.++||+|++ +|..|.||.||++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVI--DGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 58999999999999999999999999999885 344566789999999999999998 7899999999999985
No 25
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.59 E-value=5.4e-15 Score=117.11 Aligned_cols=71 Identities=13% Similarity=0.250 Sum_probs=63.3
Q ss_pred CCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHHhhcCCCC
Q 022996 147 ESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGDGS 221 (289)
Q Consensus 147 ~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~~~y~~~~ 221 (289)
..||||++||++|.++||+|+.+.++... ..++|+++||.++||+|++ +|.+|+||.+|++||+++|....
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~--~p~~~~~~nP~g~vPvL~~--~~~~i~eS~~I~eYLde~~~~~~ 90 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKR--KPEDLKDLAPGTQPPFLLY--NGEVKTDNNKIEEFLEETLCPPK 90 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCC--CCHHHHHhCCCCCCCEEEE--CCEEecCHHHHHHHHHHHccCCC
Confidence 46999999999999999999999985322 3479999999999999998 89999999999999999997654
No 26
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.58 E-value=3.7e-15 Score=111.65 Aligned_cols=73 Identities=14% Similarity=0.125 Sum_probs=65.3
Q ss_pred CeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHHhh
Q 022996 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGK 216 (289)
Q Consensus 140 ~itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~~~ 216 (289)
.++||+++.|++|+++|++|+++|++|+.+.+.. .+..++++++||.++||+|++ +|.+|+||.+|++||+++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~--~~~~~~~~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTY--EEWQESLKPKMLFGQLPCFKD--GDLTLVQSNAILRHLGRK 73 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecH--HHhhhhhhccCCCCCCCEEEE--CCEEEEcHHHHHHHHhcC
Confidence 3799999999999999999999999999998853 234568999999999999998 889999999999999864
No 27
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=3.2e-15 Score=131.13 Aligned_cols=87 Identities=23% Similarity=0.323 Sum_probs=77.5
Q ss_pred CCCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcC--CCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHHh
Q 022996 138 EKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCP--RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (289)
Q Consensus 138 ~~~itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~--~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~~ 215 (289)
+.+.+||+|..|..++|||++|..+|||||.++|. +++.+...+|.++||.++||.|++ ||.+|.||.||++||++
T Consensus 3 ~~KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i--~g~tl~eS~AII~YLeE 80 (217)
T KOG0868|consen 3 AAKPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVI--DGLTLTESLAIIEYLEE 80 (217)
T ss_pred cccchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEE--CCEEeehHHHHHHHHHh
Confidence 34789999999998999999999999999999993 444556679999999999999999 99999999999999999
Q ss_pred hcCCC-CCCccc
Q 022996 216 KYGDG-SVPFML 226 (289)
Q Consensus 216 ~y~~~-~~P~~l 226 (289)
.|+.. ..|.|.
T Consensus 81 t~P~ppLLP~d~ 92 (217)
T KOG0868|consen 81 TYPDPPLLPKDP 92 (217)
T ss_pred cCCCCCCCCcCH
Confidence 99864 678876
No 28
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=8e-15 Score=132.79 Aligned_cols=106 Identities=25% Similarity=0.346 Sum_probs=93.4
Q ss_pred CCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEc-CCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHHhhc
Q 022996 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLYYPC-PRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKY 217 (289)
Q Consensus 139 ~~itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V-~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~~~y 217 (289)
+.++||+++.+|.|++|.++++++|++|+.+.+ ..+++|.+++|+++||.++||+|+| +|..++||.||+.||.++|
T Consensus 1 ~~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d--~~~~l~eS~AI~~Yl~~ky 78 (226)
T KOG0867|consen 1 MKLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALED--GGLTLWESHAILRYLAEKY 78 (226)
T ss_pred CCceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEec--CCeEEeeHHHHHHHHHHHc
Confidence 468999999999999999999999999999988 4678899999999999999999999 8999999999999999999
Q ss_pred C--CC-CCCccc-chhhhhhHHhHHHHHhhcCC
Q 022996 218 G--DG-SVPFML-SLGLLTTLTEGFAMIGRLGK 246 (289)
Q Consensus 218 ~--~~-~~P~~l-~~~~~~~~~~~~a~i~R~~~ 246 (289)
+ .. .+|.+. .++.++..+.|.+..++...
T Consensus 79 ~~~~~~l~p~~~~~ra~v~~~l~~~~~~l~~~~ 111 (226)
T KOG0867|consen 79 GPLGGILLPKDLKERAIVDQWLEFENGVLDPVT 111 (226)
T ss_pred CCCCcccCCcCHHHHHHHHHHHHhhhccccccc
Confidence 6 22 467665 45788888888887777654
No 29
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.57 E-value=1.2e-14 Score=108.11 Aligned_cols=75 Identities=27% Similarity=0.382 Sum_probs=66.6
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCC-CCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHHhhcC
Q 022996 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPR-NGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYG 218 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~-~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~~~y~ 218 (289)
++||+++. ++|++|+++|+++|++|+.+.++. ++.++.++|.++||.++||+|++ +|..|+||.+|++||+++|+
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVD--GDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEE--CCEEEEcHHHHHHHHHHhCc
Confidence 57999886 689999999999999999998853 24456789999999999999998 88999999999999999875
No 30
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.57 E-value=9e-15 Score=108.61 Aligned_cols=71 Identities=23% Similarity=0.277 Sum_probs=63.1
Q ss_pred eEEEEcCCCccHHHHHHHHHH--cCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHH
Q 022996 141 IEIYEYESCPFCRKVREIVAV--LDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e--~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~ 214 (289)
++||++..||+|+|++++|.+ +|++|+.+.++. .++.++|+++||.++||+|+++ +|..|+||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~--~~~~~~~~~~~p~~~vP~l~~~-~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNP--WSDDESLLAVNPLGKIPALVLD-DGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCc--ccCChHHHHhCCCCCCCEEEEC-CCCEEECHHHHHhhhC
Confidence 589999999999999999999 899999998853 2346899999999999999853 7889999999999985
No 31
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.56 E-value=5.9e-15 Score=110.08 Aligned_cols=68 Identities=26% Similarity=0.406 Sum_probs=58.0
Q ss_pred CCccHHHHHHHHHHcCCCeEEEEc-C-CCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHHhh
Q 022996 148 SCPFCRKVREIVAVLDLDVLYYPC-P-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGK 216 (289)
Q Consensus 148 ~cP~CrkVr~aL~e~gI~ye~~~V-~-~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~~~ 216 (289)
.||||+||+++|+++||+|+...+ . .++....++|.++||.++||+|+++ +|.+++||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~-~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDP-DGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEET-TTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEEC-CCCEeeCHHHHHHHHhcC
Confidence 599999999999999999999887 2 2344556899999999999999986 788999999999999875
No 32
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.55 E-value=1.1e-14 Score=111.40 Aligned_cols=75 Identities=25% Similarity=0.333 Sum_probs=62.2
Q ss_pred eEEEEc-------CCCccHHHHHHHHHHcCCCeEEEEcC-CCCCCChhHHHhhCCCCcccEEEECCC-CccccChHHHHH
Q 022996 141 IEIYEY-------ESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNT-GVSMYESDNIIK 211 (289)
Q Consensus 141 itLY~~-------~~cP~CrkVr~aL~e~gI~ye~~~V~-~~~~~~~~e~~~inp~~tVP~Lvd~n~-G~~I~ES~aIi~ 211 (289)
++||.+ ..||||+||+++|.++|++|+.+.+. .+..+...++ ++||.++||+|++ + |.+|+||.+|++
T Consensus 1 ~~~~~~~~~~~~~~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~--~~~~~l~eS~aI~~ 77 (84)
T cd03038 1 ITLYDLAGKDPVRAFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVD--GSGEVIGDSFAIAE 77 (84)
T ss_pred CeeEeccCCCCCCCcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEE--CCCCEEeCHHHHHH
Confidence 456655 57999999999999999999999884 3233334455 8999999999998 5 899999999999
Q ss_pred HHHhhcC
Q 022996 212 YLVGKYG 218 (289)
Q Consensus 212 YL~~~y~ 218 (289)
||+++|+
T Consensus 78 yL~~~~p 84 (84)
T cd03038 78 YLEEAYP 84 (84)
T ss_pred HHHHhCc
Confidence 9999874
No 33
>PLN02395 glutathione S-transferase
Probab=99.55 E-value=3.3e-14 Score=125.22 Aligned_cols=97 Identities=15% Similarity=0.221 Sum_probs=78.5
Q ss_pred CCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcC-CCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHHhhc
Q 022996 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKY 217 (289)
Q Consensus 139 ~~itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~-~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~~~y 217 (289)
|.++||+...| +++||+++|.++|++|+.+.+. .++++..++|+++||.|+||+|+| +|.+|+||.+|++||+++|
T Consensus 1 ~~~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~--~~~~l~ES~aI~~YL~~~~ 77 (215)
T PLN02395 1 MVLKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVD--GDYKIFESRAIMRYYAEKY 77 (215)
T ss_pred CeEEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEE--CCEEEEcHHHHHHHHHHHc
Confidence 36899997765 5899999999999999999884 445566789999999999999998 8889999999999999999
Q ss_pred CC---CCCCccc-chhhhhhHHhHH
Q 022996 218 GD---GSVPFML-SLGLLTTLTEGF 238 (289)
Q Consensus 218 ~~---~~~P~~l-~~~~~~~~~~~~ 238 (289)
+. ..+|.+. .++++.....|.
T Consensus 78 ~~~~~~l~p~~~~~~~~~~~~~~~~ 102 (215)
T PLN02395 78 RSQGPDLLGKTIEERGQVEQWLDVE 102 (215)
T ss_pred CCCCcCcCCCChhHHHHHHHHHHHH
Confidence 64 3567553 334555554443
No 34
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.54 E-value=2e-14 Score=108.07 Aligned_cols=67 Identities=25% Similarity=0.424 Sum_probs=60.5
Q ss_pred eEEEEcC-------CCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHH
Q 022996 141 IEIYEYE-------SCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYL 213 (289)
Q Consensus 141 itLY~~~-------~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL 213 (289)
++||++. .||||+||+++|+++|++|+.+.+.. .++||.++||+|++ +|.+|+||.+|++||
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~---------~~~~p~g~vPvl~~--~g~~l~eS~~I~~yL 70 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL---------AKRSPKGKLPFIEL--NGEKIADSELIIDHL 70 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc---------ccCCCCCCCCEEEE--CCEEEcCHHHHHHHH
Confidence 7999998 57999999999999999999987632 26899999999998 889999999999999
Q ss_pred HhhcC
Q 022996 214 VGKYG 218 (289)
Q Consensus 214 ~~~y~ 218 (289)
+++|+
T Consensus 71 ~~~~~ 75 (75)
T cd03080 71 EEKYG 75 (75)
T ss_pred HHHcC
Confidence 99985
No 35
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.54 E-value=2.7e-14 Score=101.44 Aligned_cols=71 Identities=21% Similarity=0.345 Sum_probs=62.2
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHH
Q 022996 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~ 214 (289)
++||++++||+|++++++|+++|++|+.+.+...... ..++.+++|.+++|+|++ +|.+++||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~P~l~~--~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGE-QEEFLALNPLGKVPVLED--GGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCC-CHHHHhcCCCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 4899999999999999999999999999998532222 226899999999999998 7899999999999984
No 36
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.54 E-value=1.1e-14 Score=108.07 Aligned_cols=72 Identities=13% Similarity=0.073 Sum_probs=63.1
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHHh
Q 022996 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~~ 215 (289)
++||+++.|++|++||++|+++|++|+.+.+... .....+|.++||.++||+|++ +|.+|+||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~-~~~~~~~~~~~p~~~vP~L~~--~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYE-EWPELDLKPTLPFGQLPVLEI--DGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHH-HhhhhhhccCCcCCCCCEEEE--CCEEEEecHHHHHHhhC
Confidence 5899999999999999999999999999988532 122355899999999999998 78999999999999974
No 37
>PRK10387 glutaredoxin 2; Provisional
Probab=99.53 E-value=5.6e-14 Score=123.13 Aligned_cols=78 Identities=29% Similarity=0.524 Sum_probs=66.3
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEE-ECCCCccccChHHHHHHHHhhcCC
Q 022996 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV-DPNTGVSMYESDNIIKYLVGKYGD 219 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lv-d~n~G~~I~ES~aIi~YL~~~y~~ 219 (289)
|+||++..||+|+||+++|+++||+|+.+.+... .+.. ..++||.++||+|+ + +|.+|+||.+|++||+++|+.
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~-~~~~--~~~~~p~~~VPvL~~~--~g~~l~eS~aI~~yL~~~~~~ 75 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLAND-DEAT--PIRMIGQKQVPILQKD--DGSYMPESLDIVHYIDELDGK 75 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCC-chhh--HHHhcCCcccceEEec--CCeEecCHHHHHHHHHHhCCC
Confidence 5899999999999999999999999999988532 2222 26799999999995 5 889999999999999999986
Q ss_pred CCCC
Q 022996 220 GSVP 223 (289)
Q Consensus 220 ~~~P 223 (289)
...+
T Consensus 76 ~~l~ 79 (210)
T PRK10387 76 PLLT 79 (210)
T ss_pred ccCC
Confidence 5443
No 38
>PRK11752 putative S-transferase; Provisional
Probab=99.50 E-value=1e-13 Score=127.89 Aligned_cols=97 Identities=20% Similarity=0.321 Sum_probs=76.9
Q ss_pred CeEEEEcCCCccHHHHHHHHHHc------CCCeEEEEcC-CCCCCChhHHHhhCCCCcccEEEECCC--CccccChHHHH
Q 022996 140 PIEIYEYESCPFCRKVREIVAVL------DLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNT--GVSMYESDNII 210 (289)
Q Consensus 140 ~itLY~~~~cP~CrkVr~aL~e~------gI~ye~~~V~-~~~~~~~~e~~~inp~~tVP~Lvd~n~--G~~I~ES~aIi 210 (289)
+++||+.. ||+|+||+++|+++ |++|+.+.|+ ..+++..++|+++||.++||+|++.++ |.+|+||.+|+
T Consensus 44 ~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~AIl 122 (264)
T PRK11752 44 PLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESGAIL 122 (264)
T ss_pred CeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHHHHH
Confidence 69999975 99999999999997 8999998884 445667899999999999999998422 46999999999
Q ss_pred HHHHhhcCCCCCCccc-chhhhhhHHhHH
Q 022996 211 KYLVGKYGDGSVPFML-SLGLLTTLTEGF 238 (289)
Q Consensus 211 ~YL~~~y~~~~~P~~l-~~~~~~~~~~~~ 238 (289)
+||+++|+. .+|.+. .++.+...+.|.
T Consensus 123 ~YL~~~~~~-L~P~~~~era~v~~wl~~~ 150 (264)
T PRK11752 123 LYLAEKFGA-FLPKDLAARTETLNWLFWQ 150 (264)
T ss_pred HHHHHhcCC-cCCCCHHHHHHHHHHHHHH
Confidence 999999973 667543 334444444443
No 39
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=99.48 E-value=2.5e-13 Score=118.96 Aligned_cols=93 Identities=24% Similarity=0.330 Sum_probs=75.7
Q ss_pred EEEEcCCCccHHHHHHHHHHcCCCeEEEEcCC--CCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHHhhcCC
Q 022996 142 EIYEYESCPFCRKVREIVAVLDLDVLYYPCPR--NGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGD 219 (289)
Q Consensus 142 tLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~--~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~~~y~~ 219 (289)
+||++..||+|++|+++|.++||+|+.+.+.. .+.+..++|.++||.++||+|++ +|.+|+||.+|++||+++|+.
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~--~g~~l~ES~aI~~yl~~~~~~ 78 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDI--DGEVLTQSLAIIEYLEETYPD 78 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEE--CCEEeecHHHHHHHHHHhCCC
Confidence 48999999999999999999999999998853 23445688999999999999998 889999999999999999975
Q ss_pred C-CCCccc-chhhhhhHHh
Q 022996 220 G-SVPFML-SLGLLTTLTE 236 (289)
Q Consensus 220 ~-~~P~~l-~~~~~~~~~~ 236 (289)
. .+|.+. .+.++.....
T Consensus 79 ~~l~p~~~~~~a~~~~~~~ 97 (210)
T TIGR01262 79 PPLLPADPIKRARVRALAL 97 (210)
T ss_pred CCCCCCCHHHHHHHHHHHH
Confidence 3 566543 2344444333
No 40
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.47 E-value=3.4e-13 Score=117.43 Aligned_cols=78 Identities=15% Similarity=0.172 Sum_probs=66.5
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcC-CCCC-CChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHHhhcC
Q 022996 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGP-NFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYG 218 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~-~~~~-~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~~~y~ 218 (289)
|+||+...+ ++++|+++|+++||+|+.+.+. .+++ +..++|.++||.++||+|+++ +|.+|+||.+|++||+++|+
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~-~g~~l~eS~aI~~YL~~~~~ 78 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLD-DGTLLTEGVAIMQYLADSVP 78 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeC-CCcEeecHHHHHHHHHHhCc
Confidence 589998865 6999999999999999999884 2232 456899999999999999852 78999999999999999997
Q ss_pred CC
Q 022996 219 DG 220 (289)
Q Consensus 219 ~~ 220 (289)
..
T Consensus 79 ~~ 80 (201)
T PRK10542 79 DR 80 (201)
T ss_pred cc
Confidence 54
No 41
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.47 E-value=1.3e-13 Score=122.50 Aligned_cols=76 Identities=29% Similarity=0.507 Sum_probs=65.6
Q ss_pred EEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEE-ECCCCccccChHHHHHHHHhhcCCC
Q 022996 142 EIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV-DPNTGVSMYESDNIIKYLVGKYGDG 220 (289)
Q Consensus 142 tLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lv-d~n~G~~I~ES~aIi~YL~~~y~~~ 220 (289)
+||++..||||+|||++|.++|++|+.+++..+ ++ ....++||.++||+|+ + +|.+|+||.+|++||+++|+..
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~-~~--~~~~~~np~g~vP~l~~~--~g~~l~es~~I~~yL~~~~~~~ 75 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLND-DE--ETPIRMIGAKQVPILQKD--DGRAMPESLDIVAYFDKLDGEP 75 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCC-cc--hhHHHhcCCCCcceEEee--CCeEeccHHHHHHHHHHhCCCc
Confidence 589999999999999999999999999887432 22 2348999999999998 6 8899999999999999999764
Q ss_pred CC
Q 022996 221 SV 222 (289)
Q Consensus 221 ~~ 222 (289)
.+
T Consensus 76 ~~ 77 (209)
T TIGR02182 76 LL 77 (209)
T ss_pred cC
Confidence 43
No 42
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.45 E-value=3.8e-13 Score=102.54 Aligned_cols=75 Identities=20% Similarity=0.367 Sum_probs=66.2
Q ss_pred CCCCCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHH
Q 022996 136 RPEKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (289)
Q Consensus 136 ~~~~~itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~ 214 (289)
+..++++||+.++||+|++++.+|..+|++|+++++..+. ...++.+.++..+||++++ +|..|+++++|.+||+
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~--~~~~~~~~~g~~~vP~i~i--~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDA--RGRSLRAVTGATTVPQVFI--GGKLIGGSDELEAYLA 79 (79)
T ss_pred CCCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCCh--HHHHHHHHHCCCCcCeEEE--CCEEEcCHHHHHHHhC
Confidence 3456799999999999999999999999999999985432 2467888899999999998 8999999999999985
No 43
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=5.4e-13 Score=121.64 Aligned_cols=84 Identities=18% Similarity=0.231 Sum_probs=75.3
Q ss_pred CCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhC-CCCcccEEEECCCCccccChHHHHHHHHhhc
Q 022996 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMG-GKKQFPYMVDPNTGVSMYESDNIIKYLVGKY 217 (289)
Q Consensus 139 ~~itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~in-p~~tVP~Lvd~n~G~~I~ES~aIi~YL~~~y 217 (289)
..++||++..|||++||+++|+++||+||.++++.. +++++|++.| +.++||+|++ +|..|+||..|++||++.|
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~--~Ks~~ll~~np~hkKVPvL~H--n~k~i~ESliiveYiDe~w 83 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLT--NKSEWLLEKNPVHKKVPVLEH--NGKPICESLIIVEYIDETW 83 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCC--CCCHHHHHhccccccCCEEEE--CCceehhhHHHHHHHHhhc
Confidence 569999999999999999999999999999998543 2578999999 7889999999 8989999999999999999
Q ss_pred CC--CCCCccc
Q 022996 218 GD--GSVPFML 226 (289)
Q Consensus 218 ~~--~~~P~~l 226 (289)
+. ..+|.|.
T Consensus 84 ~~~~~iLP~DP 94 (231)
T KOG0406|consen 84 PSGPPILPSDP 94 (231)
T ss_pred cCCCCCCCCCH
Confidence 84 3578875
No 44
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.44 E-value=3.2e-13 Score=102.21 Aligned_cols=73 Identities=19% Similarity=0.351 Sum_probs=61.2
Q ss_pred CeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcC-CCCCCChhHHHhhCCC-CcccEEEECCCCccccChHHHHHHHHh
Q 022996 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGK-KQFPYMVDPNTGVSMYESDNIIKYLVG 215 (289)
Q Consensus 140 ~itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~-~~~~~~~~e~~~inp~-~tVP~Lvd~n~G~~I~ES~aIi~YL~~ 215 (289)
++++|..++ .|.++|++|+++|++|+.+.+. ..+++++++|.+.||. ++||+|+|. +|.+++||.||++||++
T Consensus 2 ~l~l~~~~~--~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~-~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 2 TLTLYNGRG--RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDG-DGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEESSST--TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEET-TTEEEESHHHHHHHHHH
T ss_pred EEEEECCCC--chHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEEC-CCCEEEcHHHHHHHhCC
Confidence 456666665 8999999999999999999985 4566667999999999 999999992 39999999999999985
No 45
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.44 E-value=3.8e-13 Score=103.42 Aligned_cols=74 Identities=16% Similarity=0.288 Sum_probs=61.6
Q ss_pred EEEEcCCCccHHHHHHHHHHcCCCeEEEEcC-CCCCCC-hhHHHh-----hCCCCcccEEEECCCCccccChHHHHHHHH
Q 022996 142 EIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNF-RPKVLQ-----MGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (289)
Q Consensus 142 tLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~-~~~~~~-~~e~~~-----inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~ 214 (289)
+||++..++.|++++++|+++|++|+.+.+. .++++. .+++.+ .+|.++||+|+| ||.+|+||.||++||+
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~--~g~~l~ES~AIl~YLa 79 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYID--GDVKLTQSNAILRYIA 79 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEE--CCEEEeehHHHHHHHh
Confidence 7899999999999999999999999999985 333332 345543 229999999998 8899999999999999
Q ss_pred hhc
Q 022996 215 GKY 217 (289)
Q Consensus 215 ~~y 217 (289)
++|
T Consensus 80 ~~~ 82 (82)
T cd03075 80 RKH 82 (82)
T ss_pred hcC
Confidence 875
No 46
>PLN02378 glutathione S-transferase DHAR1
Probab=99.43 E-value=3.4e-13 Score=120.09 Aligned_cols=72 Identities=18% Similarity=0.202 Sum_probs=63.3
Q ss_pred EcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHHhhcCCC
Q 022996 145 EYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGDG 220 (289)
Q Consensus 145 ~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~~~y~~~ 220 (289)
.+..||||+||+++|+++|++|+.+.++.. +..++|+++||.|+||+|++ +|.+|+||.+|++||+++|+..
T Consensus 16 ~~~~~p~~~rv~~~L~e~gl~~e~~~v~~~--~~~~~~l~inP~G~VPvL~~--~~~~l~ES~aI~~YL~~~~~~~ 87 (213)
T PLN02378 16 HLGDCPFSQRALLTLEEKSLTYKIHLINLS--DKPQWFLDISPQGKVPVLKI--DDKWVTDSDVIVGILEEKYPDP 87 (213)
T ss_pred CCCCCcchHHHHHHHHHcCCCCeEEEeCcc--cCCHHHHHhCCCCCCCEEEE--CCEEecCHHHHHHHHHHhCCCC
Confidence 345699999999999999999999998532 23579999999999999998 7889999999999999999753
No 47
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.42 E-value=7.1e-13 Score=101.01 Aligned_cols=72 Identities=14% Similarity=0.206 Sum_probs=61.9
Q ss_pred CeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhC-----CCCcccEEEECCCCccccChHHHHHHHH
Q 022996 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMG-----GKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (289)
Q Consensus 140 ~itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~in-----p~~tVP~Lvd~n~G~~I~ES~aIi~YL~ 214 (289)
+++||+++.++.|++++++|+++|++|+.+.+.. .+++.+.+ +.++||+|++ ||.+|+||.||++||+
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~-----~~~~~~~~~~~~~~~g~vP~L~~--~g~~l~ES~AI~~YL~ 73 (79)
T cd03077 1 KPVLHYFNGRGRMESIRWLLAAAGVEFEEKFIES-----AEDLEKLKKDGSLMFQQVPMVEI--DGMKLVQTRAILNYIA 73 (79)
T ss_pred CCEEEEeCCCChHHHHHHHHHHcCCCcEEEEecc-----HHHHHhhccccCCCCCCCCEEEE--CCEEEeeHHHHHHHHH
Confidence 3589999999999999999999999999998853 13444444 4899999998 8899999999999999
Q ss_pred hhcC
Q 022996 215 GKYG 218 (289)
Q Consensus 215 ~~y~ 218 (289)
++|+
T Consensus 74 ~~~~ 77 (79)
T cd03077 74 GKYN 77 (79)
T ss_pred HHcC
Confidence 9986
No 48
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.42 E-value=5.5e-13 Score=116.55 Aligned_cols=83 Identities=17% Similarity=0.169 Sum_probs=69.5
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHHhhcCCC
Q 022996 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGDG 220 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~~~y~~~ 220 (289)
++||++..||++++|+++|+++|++|+.+.+... ...+++.++||.++||+|++. +|.+|+||.+|++||+++++..
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~--~~~~~~~~~nP~g~vP~L~~~-~g~~l~eS~aI~~yL~~~~~~~ 77 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPY--NADNGVAQYNPLGKVPALVTE-EGECWFDSPIIAEYIELLNVAP 77 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCC--CCchhhhhcCCccCCCeEEeC-CCCeeecHHHHHHHHHHhCCCC
Confidence 5899999999999999999999999999887421 123578889999999999842 7889999999999999998643
Q ss_pred -CCCccc
Q 022996 221 -SVPFML 226 (289)
Q Consensus 221 -~~P~~l 226 (289)
.+|.+.
T Consensus 78 ~l~p~~~ 84 (202)
T PRK10357 78 AMLPRDP 84 (202)
T ss_pred CCCCCCH
Confidence 566554
No 49
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.42 E-value=5.6e-13 Score=98.96 Aligned_cols=65 Identities=22% Similarity=0.385 Sum_probs=57.4
Q ss_pred eEEEEcC-------CCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHH
Q 022996 141 IEIYEYE-------SCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYL 213 (289)
Q Consensus 141 itLY~~~-------~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL 213 (289)
++||.+. .||+|++++++|+++||+|+.+.+... .++|.++||+|++ +|.++.||.+|++||
T Consensus 1 ~~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~---------~~~p~g~vP~l~~--~g~~l~es~~I~~yL 69 (72)
T cd03054 1 LELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNP---------WRSPTGKLPFLEL--NGEKIADSEKIIEYL 69 (72)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCc---------ccCCCcccCEEEE--CCEEEcCHHHHHHHH
Confidence 4688887 899999999999999999999987421 1789999999998 899999999999999
Q ss_pred Hhh
Q 022996 214 VGK 216 (289)
Q Consensus 214 ~~~ 216 (289)
+++
T Consensus 70 ~~~ 72 (72)
T cd03054 70 KKK 72 (72)
T ss_pred hhC
Confidence 874
No 50
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.42 E-value=5.2e-13 Score=122.29 Aligned_cols=75 Identities=11% Similarity=0.148 Sum_probs=65.8
Q ss_pred cCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHHhhcCCCCCCc
Q 022996 146 YESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGDGSVPF 224 (289)
Q Consensus 146 ~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~~~y~~~~~P~ 224 (289)
...||||++|+++|.++||+|+.+.++.. +..++|+++||.++||+|++ +|.+|+||.+|++||+++|+.+.+|.
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~~e~~~vd~~--~~~~~fl~inP~g~vPvL~~--~g~~l~ES~aI~eYL~e~~~~~~~p~ 90 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVVFNVTTVDLK--RKPEDLQNLAPGTHPPFLTY--NTEVKTDVNKIEEFLEETLCPPRYPK 90 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEECCC--CCCHHHHHHCcCCCCCEEEE--CCEEeecHHHHHHHHHHHcCCCCCCC
Confidence 45799999999999999999999999542 23589999999999999998 89999999999999999997654443
No 51
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.41 E-value=7.8e-13 Score=99.24 Aligned_cols=68 Identities=18% Similarity=0.337 Sum_probs=59.6
Q ss_pred EcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHH
Q 022996 145 EYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (289)
Q Consensus 145 ~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~ 214 (289)
....|++|++|+++|+++|++|+.+.+.....+..++|+++||.++||+|++ +|.+|+||.+|++||+
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~--~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVD--GGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEE--CCEEEEcHHHHHHHhC
Confidence 3567999999999999999999999885433345689999999999999998 8899999999999984
No 52
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.38 E-value=2.1e-12 Score=96.16 Aligned_cols=71 Identities=17% Similarity=0.358 Sum_probs=63.4
Q ss_pred CeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHH
Q 022996 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (289)
Q Consensus 140 ~itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~ 214 (289)
+++||+.++||+|.+++.+|.++|++|+.+++..+. ...++.+.++..+||+++. +|..|+++++|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~--~~~~~~~~~g~~~vP~ifi--~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDI--TGRSLRAVTGAMTVPQVFI--DGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCCh--hHHHHHHHhCCCCcCeEEE--CCEEEeCHHHHHHHhC
Confidence 689999999999999999999999999999986433 2456778899999999998 8999999999999985
No 53
>PRK10638 glutaredoxin 3; Provisional
Probab=99.35 E-value=3.1e-12 Score=98.15 Aligned_cols=75 Identities=16% Similarity=0.380 Sum_probs=65.9
Q ss_pred CCCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHHh
Q 022996 138 EKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (289)
Q Consensus 138 ~~~itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~~ 215 (289)
|.+++||+.++||||++++.+|.++|++|+++++..+. ..+.++.+.+|..+||+|+. +|..|++.+++..+-.+
T Consensus 1 m~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~-~~~~~l~~~~g~~~vP~i~~--~g~~igG~~~~~~~~~~ 75 (83)
T PRK10638 1 MANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDA-AKREEMIKRSGRTTVPQIFI--DAQHIGGCDDLYALDAR 75 (83)
T ss_pred CCcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCH-HHHHHHHHHhCCCCcCEEEE--CCEEEeCHHHHHHHHHc
Confidence 45799999999999999999999999999999996432 24678999999999999998 89999999999887653
No 54
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.33 E-value=3.5e-12 Score=118.44 Aligned_cols=71 Identities=23% Similarity=0.250 Sum_probs=62.9
Q ss_pred cCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHHhhcCCC
Q 022996 146 YESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGDG 220 (289)
Q Consensus 146 ~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~~~y~~~ 220 (289)
...||||+||+++|+++||+|+.+.++.. +..++|+++||.++||+|++ +|.+|+||.+|++||+++|+..
T Consensus 70 ~g~cp~s~rV~i~L~ekgi~ye~~~vdl~--~~~~~fl~iNP~GkVPvL~~--d~~~L~ES~aI~~YL~e~~p~~ 140 (265)
T PLN02817 70 LGDCPFCQRVLLTLEEKHLPYDMKLVDLT--NKPEWFLKISPEGKVPVVKL--DEKWVADSDVITQALEEKYPDP 140 (265)
T ss_pred CCCCcHHHHHHHHHHHcCCCCEEEEeCcC--cCCHHHHhhCCCCCCCEEEE--CCEEEecHHHHHHHHHHHCCCC
Confidence 44599999999999999999999988542 24588999999999999998 6789999999999999999864
No 55
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.26 E-value=1.2e-11 Score=109.16 Aligned_cols=79 Identities=20% Similarity=0.230 Sum_probs=64.6
Q ss_pred CCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCC--ChhHHH--hhCCCCcccEEEECCCCccccChHHHHHHHH
Q 022996 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPN--FRPKVL--QMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (289)
Q Consensus 139 ~~itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~--~~~e~~--~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~ 214 (289)
.+++||+++.++.|++||++|+++|++|+.+.+....+. ..+++. ++||.++||+|++ +|.+|+||.||++||+
T Consensus 3 ~~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~--~~~~l~eS~AI~~YLa 80 (205)
T PTZ00057 3 EEIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEM--DNIIFAQSQAIVRYLS 80 (205)
T ss_pred CceEEEecCCCcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEE--CCEEEecHHHHHHHHH
Confidence 458999999999999999999999999999877321111 011222 4899999999999 8899999999999999
Q ss_pred hhcCC
Q 022996 215 GKYGD 219 (289)
Q Consensus 215 ~~y~~ 219 (289)
++|+.
T Consensus 81 ~~~~~ 85 (205)
T PTZ00057 81 KKYKI 85 (205)
T ss_pred HHcCC
Confidence 99974
No 56
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.22 E-value=3.5e-11 Score=89.88 Aligned_cols=69 Identities=14% Similarity=0.165 Sum_probs=61.5
Q ss_pred CeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHH
Q 022996 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIK 211 (289)
Q Consensus 140 ~itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~ 211 (289)
.++||+.++||+|++|+.+|.++||+|+.+++..+ +...+++.+++|..+||+++. +|..|++-+++.+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~-~~~~~el~~~~g~~~vP~v~i--~~~~iGg~~~~~~ 70 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIF-PERKAELEERTGSSVVPQIFF--NEKLVGGLTDLKS 70 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCC-HHHHHHHHHHhCCCCcCEEEE--CCEEEeCHHHHHh
Confidence 58999999999999999999999999999998653 335678999999999999998 8999999888765
No 57
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=5.5e-11 Score=91.62 Aligned_cols=75 Identities=15% Similarity=0.344 Sum_probs=60.8
Q ss_pred CCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHH-hhCCCCcccEEEECCCCccccChHHHHHHHHh
Q 022996 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVL-QMGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (289)
Q Consensus 139 ~~itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~-~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~~ 215 (289)
+++++|+.++||||.+++.+|.++|++|+++++.........++. +.+|..+||++++ +|..++.+.++.++...
T Consensus 1 ~~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~~igg~~d~~~~~~~ 76 (80)
T COG0695 1 ANVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGKHVGGCDDLDALEAK 76 (80)
T ss_pred CCEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCEEEeCcccHHHHHhh
Confidence 468999999999999999999999999999998654322344555 4559999999999 88888887777776544
No 58
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.18 E-value=8.9e-11 Score=90.28 Aligned_cols=77 Identities=18% Similarity=0.356 Sum_probs=66.7
Q ss_pred CCeEEEEcCCCccHHHHHHHHHH-----cCCCeEEEEcCCCCCCChhHHHhhCCC--CcccEEEECCCCccccChHHHHH
Q 022996 139 KPIEIYEYESCPFCRKVREIVAV-----LDLDVLYYPCPRNGPNFRPKVLQMGGK--KQFPYMVDPNTGVSMYESDNIIK 211 (289)
Q Consensus 139 ~~itLY~~~~cP~CrkVr~aL~e-----~gI~ye~~~V~~~~~~~~~e~~~inp~--~tVP~Lvd~n~G~~I~ES~aIi~ 211 (289)
|.++||+.++||+|.+|+.+|.+ .|++|+.+++..++ ....++.+..+. .+||+++. +|..+++.++|.+
T Consensus 1 m~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~-~~~~el~~~~~~~~~~vP~ifi--~g~~igg~~~~~~ 77 (85)
T PRK11200 1 MFVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEG-ISKADLEKTVGKPVETVPQIFV--DQKHIGGCTDFEA 77 (85)
T ss_pred CEEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCCh-HHHHHHHHHHCCCCCcCCEEEE--CCEEEcCHHHHHH
Confidence 57999999999999999999999 89999999986432 224677777775 69999998 8999999999999
Q ss_pred HHHhhcC
Q 022996 212 YLVGKYG 218 (289)
Q Consensus 212 YL~~~y~ 218 (289)
|+.+.|+
T Consensus 78 ~~~~~~~ 84 (85)
T PRK11200 78 YVKENLG 84 (85)
T ss_pred HHHHhcc
Confidence 9998875
No 59
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=3.3e-11 Score=105.95 Aligned_cols=76 Identities=28% Similarity=0.513 Sum_probs=65.8
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHHhhcCCC
Q 022996 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGDG 220 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~~~y~~~ 220 (289)
++||-|+.||||.|+|++.-.+|||++...+..+++. + =.++-|+.+||+|+-+ +|..|.||.+|+.|+++.++..
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~-T--p~rmiG~KqVPiL~Ke-dg~~m~ESlDIV~y~d~~~~~~ 76 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEE-T--PIRMIGQKQVPILQKE-DGRAMPESLDIVHYVDELDGKP 76 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCccc-C--hhhhhcccccceEEcc-ccccchhhhHHHHHHHHhcCch
Confidence 5799999999999999999999999999988654442 2 3567899999999854 8999999999999999998864
No 60
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.17 E-value=1.2e-10 Score=90.36 Aligned_cols=75 Identities=15% Similarity=0.378 Sum_probs=63.5
Q ss_pred eEEEEcCCCccHHHHHHHHHHc-----CCCeEEEEcCCCCCCChhHHHhhCCC--CcccEEEECCCCccccChHHHHHHH
Q 022996 141 IEIYEYESCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVLQMGGK--KQFPYMVDPNTGVSMYESDNIIKYL 213 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~-----gI~ye~~~V~~~~~~~~~e~~~inp~--~tVP~Lvd~n~G~~I~ES~aIi~YL 213 (289)
++||+.++||||.+++.+|.++ +++|+.+++..++ ....++.+..+. .+||+++. +|..|+++++|..|+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~-~~~~~l~~~~g~~~~tVP~ifi--~g~~igG~~dl~~~~ 78 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEG-ISKADLEKTVGKPVETVPQIFV--DEKHVGGCTDFEQLV 78 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCH-HHHHHHHHHhCCCCCCcCeEEE--CCEEecCHHHHHHHH
Confidence 7899999999999999999998 4678888875322 124668888886 79999998 899999999999999
Q ss_pred HhhcC
Q 022996 214 VGKYG 218 (289)
Q Consensus 214 ~~~y~ 218 (289)
.++++
T Consensus 79 ~~~~~ 83 (86)
T TIGR02183 79 KENFD 83 (86)
T ss_pred Hhccc
Confidence 98875
No 61
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.17 E-value=1e-10 Score=84.27 Aligned_cols=70 Identities=14% Similarity=0.433 Sum_probs=62.0
Q ss_pred CeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHH
Q 022996 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKY 212 (289)
Q Consensus 140 ~itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~Y 212 (289)
+++||+.++||+|++++.+|.+++++|+++++..+. ....++.+++|..++|+++. +|..++++.+|.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~-~~~~~l~~~~~~~~~P~~~~--~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDG-ELREELKELSGWPTVPQIFI--NGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCH-HHHHHHHHHhCCCCcCEEEE--CCEEEecHHHHHHh
Confidence 479999999999999999999999999999986433 24678889999999999998 89999999998764
No 62
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.16 E-value=1.1e-10 Score=86.77 Aligned_cols=72 Identities=18% Similarity=0.419 Sum_probs=61.6
Q ss_pred CeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCC-cccEEEECCCCccccChHHHHHHHH
Q 022996 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKK-QFPYMVDPNTGVSMYESDNIIKYLV 214 (289)
Q Consensus 140 ~itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~-tVP~Lvd~n~G~~I~ES~aIi~YL~ 214 (289)
+|+||+.++||+|.+++.+|+++||+|+++++... +....++.+..+.. +||+++. +|..+++.++++++-.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~-~~~~~~~~~~~~~~~~vP~v~i--~g~~igg~~~~~~~~~ 73 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGD-PALREEMINRSGGRRTVPQIFI--GDVHIGGCDDLYALER 73 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCC-HHHHHHHHHHhCCCCccCEEEE--CCEEEeChHHHHHHHh
Confidence 48999999999999999999999999999999643 33456677777766 9999998 8999999999998754
No 63
>PHA03050 glutaredoxin; Provisional
Probab=99.09 E-value=3.1e-10 Score=92.32 Aligned_cols=72 Identities=17% Similarity=0.324 Sum_probs=62.8
Q ss_pred CCCeEEEEcCCCccHHHHHHHHHHcCC---CeEEEEcCCC--CCCChhHHHhhCCCCcccEEEECCCCccccChHHHHH
Q 022996 138 EKPIEIYEYESCPFCRKVREIVAVLDL---DVLYYPCPRN--GPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIK 211 (289)
Q Consensus 138 ~~~itLY~~~~cP~CrkVr~aL~e~gI---~ye~~~V~~~--~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~ 211 (289)
..+++||+.++||||.+++.+|.++|+ +|+.+++... +...+.++.++++..+||++++ +|.+|++.+++..
T Consensus 12 ~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~~iGG~ddl~~ 88 (108)
T PHA03050 12 NNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKTSIGGYSDLLE 88 (108)
T ss_pred cCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCEEEeChHHHHH
Confidence 457999999999999999999999999 8999998642 2234678899999999999999 8999999999887
No 64
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.07 E-value=2.1e-10 Score=106.00 Aligned_cols=82 Identities=17% Similarity=0.304 Sum_probs=75.7
Q ss_pred CCCCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEc-CCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHHh
Q 022996 137 PEKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPC-PRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (289)
Q Consensus 137 ~~~~itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V-~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~~ 215 (289)
+...+.||..+.+-.++|||+++.|+||+|+.++| +..++|..++|..+||.+.||||++ +..+|.|+..||+|+++
T Consensus 23 ~~e~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~--g~~II~d~tqIIdYvEr 100 (325)
T KOG4420|consen 23 PRESLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIH--GDNIISDYTQIIDYVER 100 (325)
T ss_pred chhcceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEec--CCeecccHHHHHHHHHH
Confidence 44559999999999999999999999999999999 5778999999999999999999998 88899999999999999
Q ss_pred hcCCC
Q 022996 216 KYGDG 220 (289)
Q Consensus 216 ~y~~~ 220 (289)
+|-..
T Consensus 101 tf~ge 105 (325)
T KOG4420|consen 101 TFTGE 105 (325)
T ss_pred hhccc
Confidence 99554
No 65
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.05 E-value=6.4e-10 Score=80.61 Aligned_cols=71 Identities=18% Similarity=0.410 Sum_probs=59.9
Q ss_pred CeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccc--cChHHHHHHH
Q 022996 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM--YESDNIIKYL 213 (289)
Q Consensus 140 ~itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I--~ES~aIi~YL 213 (289)
+++||+..+||+|++++.+|.++|++|+.+++..+ ++..+++.+.++..+||++++ +|..+ ++..+|.+||
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~-~~~~~~~~~~~~~~~vP~~~~--~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKD-SAAREEVLKVLGQRGVPVIVI--GHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCC-HHHHHHHHHHhCCCcccEEEE--CCEEEeeCCHHHHHHHh
Confidence 48999999999999999999999999999998543 333567888999999999998 67767 6777887776
No 66
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.05 E-value=4.9e-10 Score=84.51 Aligned_cols=72 Identities=17% Similarity=0.412 Sum_probs=63.2
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHHh
Q 022996 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~~ 215 (289)
|+||+.++||+|.+++.+|+++|++|+++++..+ +....++.+.++..+||+++. +|..+++.+++..+-.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~-~~~~~~~~~~~g~~~vP~i~i--~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGD-PALRDEMMQRSGRRTVPQIFI--GDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCC-HHHHHHHHHHhCCCCcCEEEE--CCEEEcChHHHHHHHHc
Confidence 6899999999999999999999999999999643 334678888899999999998 89999999998887654
No 67
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.04 E-value=6.4e-10 Score=88.84 Aligned_cols=74 Identities=16% Similarity=0.313 Sum_probs=62.4
Q ss_pred CCCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCC--ChhHHHhhCCCCcccEEEECCCCccccChHHHHHHH
Q 022996 138 EKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPN--FRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYL 213 (289)
Q Consensus 138 ~~~itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~--~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL 213 (289)
..+++||+.++||||.+++.+|..+|++|++++|+..... ...++.+.++..+||+++. +|..|++.+++....
T Consensus 7 ~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi--~g~~iGG~ddl~~l~ 82 (99)
T TIGR02189 7 EKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFV--GGKLVGGLENVMALH 82 (99)
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE--CCEEEcCHHHHHHHH
Confidence 4679999999999999999999999999999999643221 2345677889999999998 899999999988754
No 68
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.00 E-value=1.4e-09 Score=86.51 Aligned_cols=74 Identities=18% Similarity=0.331 Sum_probs=63.9
Q ss_pred CCCeEEEEc-----CCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHH
Q 022996 138 EKPIEIYEY-----ESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKY 212 (289)
Q Consensus 138 ~~~itLY~~-----~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~Y 212 (289)
..++.||.. ++||||.+++.+|..+|++|+++++..+ +..+.++.++++..+||++++ +|..|++.+++...
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~-~~~~~~l~~~tg~~tvP~vfi--~g~~iGG~ddl~~l 87 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLED-PEIRQGIKEYSNWPTIPQLYV--KGEFVGGCDIIMEM 87 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCC-HHHHHHHHHHhCCCCCCEEEE--CCEEEeChHHHHHH
Confidence 467999987 8999999999999999999999998543 345677888999999999999 89999999998876
Q ss_pred HH
Q 022996 213 LV 214 (289)
Q Consensus 213 L~ 214 (289)
..
T Consensus 88 ~~ 89 (97)
T TIGR00365 88 YQ 89 (97)
T ss_pred HH
Confidence 54
No 69
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.98 E-value=2.5e-09 Score=79.03 Aligned_cols=73 Identities=14% Similarity=0.271 Sum_probs=58.8
Q ss_pred CeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhC-CCCcccEEEECCCCccccC--hHHHHHHHH
Q 022996 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMG-GKKQFPYMVDPNTGVSMYE--SDNIIKYLV 214 (289)
Q Consensus 140 ~itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~in-p~~tVP~Lvd~n~G~~I~E--S~aIi~YL~ 214 (289)
+++||+..+||+|++++.+|.++|++|+.+++..+ +....++.+++ +..+||+++.. +|..+.+ +.+|+.+|.
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~-~~~~~~~~~~~~~~~~vP~i~~~-~g~~l~~~~~~~~~~~l~ 76 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEED-EGAADRVVSVNNGNMTVPTVKFA-DGSFLTNPSAAQVKAKLQ 76 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCC-HhHHHHHHHHhCCCceeCEEEEC-CCeEecCCCHHHHHHHhh
Confidence 48999999999999999999999999999998543 33456777887 99999999653 6666554 677777774
No 70
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.97 E-value=1.9e-09 Score=81.07 Aligned_cols=74 Identities=12% Similarity=0.394 Sum_probs=63.3
Q ss_pred CeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCC--CCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHHh
Q 022996 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNG--PNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (289)
Q Consensus 140 ~itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~--~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~~ 215 (289)
++++|+.++||+|.+++.+|.+.+++|+.+++.... .+...++.++++..++|+++. +|..++++++|+++..+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~--~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFI--GGKFIGGCDDLMALHKS 76 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEEcCHHHHHHHHHc
Confidence 489999999999999999999999999999985432 122456778899999999998 89999999999998765
No 71
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.96 E-value=2.4e-09 Score=83.76 Aligned_cols=74 Identities=20% Similarity=0.316 Sum_probs=64.4
Q ss_pred CCCeEEEEc-----CCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHH
Q 022996 138 EKPIEIYEY-----ESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKY 212 (289)
Q Consensus 138 ~~~itLY~~-----~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~Y 212 (289)
..+++||.. ++||||.+++.+|..+|++|+++++..+ +..+.++.+.++..+||+++. +|.+|++.+++.++
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~-~~~~~~l~~~~g~~tvP~vfi--~g~~iGG~~~l~~l 83 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILED-EEVRQGLKEYSNWPTFPQLYV--NGELVGGCDIVKEM 83 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCC-HHHHHHHHHHhCCCCCCEEEE--CCEEEeCHHHHHHH
Confidence 457999987 6999999999999999999999998643 345678889999999999998 89999999999886
Q ss_pred HH
Q 022996 213 LV 214 (289)
Q Consensus 213 L~ 214 (289)
..
T Consensus 84 ~~ 85 (90)
T cd03028 84 HE 85 (90)
T ss_pred HH
Confidence 54
No 72
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.95 E-value=2.1e-09 Score=83.00 Aligned_cols=71 Identities=20% Similarity=0.364 Sum_probs=52.6
Q ss_pred CCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccc--cChHHHHHHH
Q 022996 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM--YESDNIIKYL 213 (289)
Q Consensus 139 ~~itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I--~ES~aIi~YL 213 (289)
++++||+.++||+|.+++.+|.++||+|+++++..+ +....++ ..+|..+||+++. ++..+ ++-+.|.+..
T Consensus 1 ~~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~-~~~~~~~-~~~g~~~vPvv~i--~~~~~~Gf~~~~l~~~~ 73 (81)
T PRK10329 1 MRITIYTRNDCVQCHATKRAMESRGFDFEMINVDRV-PEAAETL-RAQGFRQLPVVIA--GDLSWSGFRPDMINRLH 73 (81)
T ss_pred CEEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCC-HHHHHHH-HHcCCCCcCEEEE--CCEEEecCCHHHHHHHH
Confidence 469999999999999999999999999999999642 2223334 4479999999988 55433 3344444433
No 73
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=98.95 E-value=2.3e-09 Score=81.90 Aligned_cols=59 Identities=14% Similarity=0.182 Sum_probs=49.0
Q ss_pred CCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHHhh
Q 022996 148 SCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGK 216 (289)
Q Consensus 148 ~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~~~ 216 (289)
.+++|.|++++|++.|++|+.+.... ++ ..+|.|+||+|++ ||.+|.||.+|+.||+++
T Consensus 16 ~~~~~~kv~~~L~elglpye~~~~~~-~~-------~~~P~GkVP~L~~--dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 16 DNASCLAVQTFLKMCNLPFNVRCRAN-AE-------FMSPSGKVPFIRV--GNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CCCCHHHHHHHHHHcCCCcEEEecCC-cc-------ccCCCCcccEEEE--CCEEEeCHHHHHHHHhcC
Confidence 46789999999999999999885421 11 1556799999998 899999999999999864
No 74
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.91 E-value=2.9e-09 Score=77.12 Aligned_cols=63 Identities=13% Similarity=0.366 Sum_probs=53.3
Q ss_pred CeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccC
Q 022996 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYE 205 (289)
Q Consensus 140 ~itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~E 205 (289)
.+++|+..+||+|++++.+|.++|++|..+++..+ ....+++.++++.++||+|++ +|..|.+
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~-~~~~~~~~~~~~~~~vP~i~~--~~~~i~g 63 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDED-PEALEELKKLNGYRSVPVVVI--GDEHLSG 63 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCC-HHHHHHHHHHcCCcccCEEEE--CCEEEec
Confidence 47999999999999999999999999999998542 334578889999999999998 6665544
No 75
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.90 E-value=1.2e-09 Score=78.48 Aligned_cols=60 Identities=17% Similarity=0.424 Sum_probs=52.1
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccc
Q 022996 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM 203 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I 203 (289)
++||+.++||+|.+++.+|+++|++|+++++... +..++++.+.++..++|+++. ||..|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~-~~~~~~l~~~~g~~~~P~v~i--~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDED-EEAREELKELSGVRTVPQVFI--DGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGS-HHHHHHHHHHHSSSSSSEEEE--TTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccc-hhHHHHHHHHcCCCccCEEEE--CCEEC
Confidence 6899999999999999999999999999999643 235678888889999999998 77653
No 76
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.86 E-value=7.4e-09 Score=77.84 Aligned_cols=73 Identities=15% Similarity=0.389 Sum_probs=60.9
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCC--eEEEEcCCCC--CCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHHh
Q 022996 141 IEIYEYESCPFCRKVREIVAVLDLD--VLYYPCPRNG--PNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~gI~--ye~~~V~~~~--~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~~ 215 (289)
+++|+.++||+|.+++.+|.+++++ |+.+++.... ......+.+.++..++|+++. +|..++++++++++..+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEEcCHHHHHHHHHc
Confidence 5799999999999999999999999 9998885422 112344677889999999998 89999999999988764
No 77
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.84 E-value=8.1e-09 Score=77.03 Aligned_cols=54 Identities=17% Similarity=0.266 Sum_probs=44.8
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEE
Q 022996 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVD 196 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd 196 (289)
++||+.++||+|++++.+|.++|++|+++++..+. ....++. ..|..+||++++
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~-~~~~~~~-~~g~~~vP~v~~ 54 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQP-EAIDYVK-AQGFRQVPVIVA 54 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCH-HHHHHHH-HcCCcccCEEEE
Confidence 58999999999999999999999999999996432 2234444 458889999987
No 78
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=98.83 E-value=9e-09 Score=96.25 Aligned_cols=74 Identities=26% Similarity=0.477 Sum_probs=61.1
Q ss_pred CCCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHHhhc
Q 022996 138 EKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKY 217 (289)
Q Consensus 138 ~~~itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~~~y 217 (289)
.-.++||+|+.||||-|||.+|...||+|+.++|.. -.+.+ .+-+-..+||+|.. .|..|.||..||.-|+...
T Consensus 88 ~L~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnp---V~r~e-Ik~SsykKVPil~~--~Geqm~dSsvIIs~laTyL 161 (370)
T KOG3029|consen 88 PLDLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNP---VLRQE-IKWSSYKKVPILLI--RGEQMVDSSVIISLLATYL 161 (370)
T ss_pred CceEEEEeeccCchHHHHHHHHhhcCCceEEEEecc---hhhhh-ccccccccccEEEe--ccceechhHHHHHHHHHHh
Confidence 357999999999999999999999999999999832 11222 44567889999987 6777999999999887654
No 79
>PRK10824 glutaredoxin-4; Provisional
Probab=98.82 E-value=1.3e-08 Score=83.99 Aligned_cols=74 Identities=22% Similarity=0.345 Sum_probs=64.2
Q ss_pred CCCeEEEEc-----CCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHH
Q 022996 138 EKPIEIYEY-----ESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKY 212 (289)
Q Consensus 138 ~~~itLY~~-----~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~Y 212 (289)
..+++||.. ++||||.+++.+|..+|++|..+++..+ +..+.++.+.++..+||+++. +|..|++++++...
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d-~~~~~~l~~~sg~~TVPQIFI--~G~~IGG~ddl~~l 90 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQN-PDIRAELPKYANWPTFPQLWV--DGELVGGCDIVIEM 90 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCC-HHHHHHHHHHhCCCCCCeEEE--CCEEEcChHHHHHH
Confidence 457999988 5999999999999999999999998643 335678889999999999999 99999999999886
Q ss_pred HH
Q 022996 213 LV 214 (289)
Q Consensus 213 L~ 214 (289)
..
T Consensus 91 ~~ 92 (115)
T PRK10824 91 YQ 92 (115)
T ss_pred HH
Confidence 53
No 80
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=9.7e-08 Score=86.16 Aligned_cols=83 Identities=14% Similarity=0.172 Sum_probs=70.6
Q ss_pred CCCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHHhhc
Q 022996 138 EKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKY 217 (289)
Q Consensus 138 ~~~itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~~~y 217 (289)
|+.++|++|.....|..+|++++..|++||.+.+..++. -.+++...|.+++|+|.. ||..|.+|.||++||+++|
T Consensus 1 m~~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~--w~~~K~~~pfgqlP~l~v--Dg~~i~QS~AI~RyLArk~ 76 (206)
T KOG1695|consen 1 MPPYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDA--WEELKDKMPFGQLPVLEV--DGKKLVQSRAILRYLARKF 76 (206)
T ss_pred CCceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccc--hhhhcccCCCCCCCEEeE--CCEeeccHHHHHHHHHHHh
Confidence 567899999999999999999999999999999865431 245566689999999987 8999999999999999999
Q ss_pred CCC-CCCc
Q 022996 218 GDG-SVPF 224 (289)
Q Consensus 218 ~~~-~~P~ 224 (289)
+-. ..+.
T Consensus 77 gl~Gkt~~ 84 (206)
T KOG1695|consen 77 GLAGKTEE 84 (206)
T ss_pred CcCCCCHH
Confidence 853 3443
No 81
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=98.51 E-value=4.5e-07 Score=68.58 Aligned_cols=58 Identities=19% Similarity=0.334 Sum_probs=49.5
Q ss_pred CCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHHhh
Q 022996 148 SCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGK 216 (289)
Q Consensus 148 ~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~~~ 216 (289)
.||+|.|+..+|+..|++|+.+.... + ..+|+|++|+|++ +|..+.+|..|++||.++
T Consensus 15 ~sp~clk~~~~Lr~~~~~~~v~~~~n--~-------~~sp~gkLP~l~~--~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 15 VDPECLAVLAYLKFAGAPLKVVPSNN--P-------WRSPTGKLPALLT--SGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEecCC--C-------CCCCCCccCEEEE--CCEEecChHHHHHHHHHc
Confidence 47999999999999999998875321 1 2468999999998 899999999999999865
No 82
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=98.50 E-value=3.6e-07 Score=78.41 Aligned_cols=72 Identities=14% Similarity=0.277 Sum_probs=61.6
Q ss_pred CeEEEEcC------CCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCC----CcccEEEECCCCccccChHHH
Q 022996 140 PIEIYEYE------SCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGK----KQFPYMVDPNTGVSMYESDNI 209 (289)
Q Consensus 140 ~itLY~~~------~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~----~tVP~Lvd~n~G~~I~ES~aI 209 (289)
.|+||+.. .||+|.+|+.+|+.++|+|++++|..+ ....+++.+..+. .+||+++. +|..|++.+++
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~-~~~~~EL~~~~g~~~~~~tvPqVFI--~G~~IGG~del 77 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMD-SGFREELRELLGAELKAVSLPRVFV--DGRYLGGAEEV 77 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCC-HHHHHHHHHHhCCCCCCCCCCEEEE--CCEEEecHHHH
Confidence 47899998 899999999999999999999999653 3456788887665 79999999 89999999999
Q ss_pred HHHHH
Q 022996 210 IKYLV 214 (289)
Q Consensus 210 i~YL~ 214 (289)
.+.-+
T Consensus 78 ~~L~e 82 (147)
T cd03031 78 LRLNE 82 (147)
T ss_pred HHHHH
Confidence 88543
No 83
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=98.47 E-value=3.6e-07 Score=89.97 Aligned_cols=70 Identities=17% Similarity=0.323 Sum_probs=57.2
Q ss_pred CCCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHH-h--------hCCCCcccEEEECCCCccccChHH
Q 022996 138 EKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVL-Q--------MGGKKQFPYMVDPNTGVSMYESDN 208 (289)
Q Consensus 138 ~~~itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~-~--------inp~~tVP~Lvd~n~G~~I~ES~a 208 (289)
|+.+++|+.++||+|.+++.+|..+||+|++++|.+. +. ..++. + .+|..+||+++. +|.+|++-++
T Consensus 1 m~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~-~~-~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~igGf~~ 76 (410)
T PRK12759 1 MVEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDD-VK-RAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHIGGYDN 76 (410)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCC-hh-HHHHHHHHhhccccccCCCCccCeEEE--CCEEEeCchH
Confidence 4679999999999999999999999999999999643 22 22322 2 257889999998 8899999888
Q ss_pred HHH
Q 022996 209 IIK 211 (289)
Q Consensus 209 Ii~ 211 (289)
+..
T Consensus 77 l~~ 79 (410)
T PRK12759 77 LMA 79 (410)
T ss_pred HHH
Confidence 876
No 84
>PTZ00062 glutaredoxin; Provisional
Probab=98.47 E-value=4.5e-07 Score=81.71 Aligned_cols=74 Identities=15% Similarity=0.231 Sum_probs=64.0
Q ss_pred CCCCeEEEEc-----CCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHH
Q 022996 137 PEKPIEIYEY-----ESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIK 211 (289)
Q Consensus 137 ~~~~itLY~~-----~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~ 211 (289)
...++.||.. +.||||++++.+|..+|++|++++|..+ +..+.++.+.++..+||+++. +|..|++.+++.+
T Consensus 111 ~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d-~~~~~~l~~~sg~~TvPqVfI--~G~~IGG~d~l~~ 187 (204)
T PTZ00062 111 RNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFED-PDLREELKVYSNWPTYPQLYV--NGELIGGHDIIKE 187 (204)
T ss_pred hcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCC-HHHHHHHHHHhCCCCCCeEEE--CCEEEcChHHHHH
Confidence 3467999988 6999999999999999999999999643 445678889999999999999 9999999988887
Q ss_pred HH
Q 022996 212 YL 213 (289)
Q Consensus 212 YL 213 (289)
..
T Consensus 188 l~ 189 (204)
T PTZ00062 188 LY 189 (204)
T ss_pred HH
Confidence 44
No 85
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=7.2e-07 Score=72.46 Aligned_cols=76 Identities=17% Similarity=0.459 Sum_probs=63.9
Q ss_pred CCCCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCC--CCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHH
Q 022996 137 PEKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRN--GPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (289)
Q Consensus 137 ~~~~itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~--~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~ 214 (289)
...++.+|+..+||||.+++.+|...++.+..++++.. +.+....+.+++++.+||.++. +|..++.+++|+.+-.
T Consensus 12 ~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk~iGG~~dl~~lh~ 89 (104)
T KOG1752|consen 12 SENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGKFIGGASDLMALHK 89 (104)
T ss_pred hcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCEEEcCHHHHHHHHH
Confidence 34679999999999999999999999999999998642 2223455667899999999999 9999999999998754
No 86
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=98.41 E-value=9.3e-07 Score=79.69 Aligned_cols=74 Identities=16% Similarity=0.222 Sum_probs=65.6
Q ss_pred CCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHHhhcCCCCCCc
Q 022996 147 ESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGDGSVPF 224 (289)
Q Consensus 147 ~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~~~y~~~~~P~ 224 (289)
-.||||+++.+.|.++|++|....|+... ..++|+++.|.+++|+|.. ++.+..||+.|.++|+++|+.+.+|.
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~~--kp~~f~~~sp~~~~P~l~~--d~~~~tDs~~Ie~~Lee~l~~p~~~~ 92 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLSR--KPEWFLDISPGGKPPVLKF--DEKWVTDSDKIEEFLEEKLPPPKLPT 92 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecCC--CcHHHHhhCCCCCCCeEEe--CCceeccHHHHHHHHHHhcCCCCCcc
Confidence 46999999999999999999998885432 2489999999999999998 89999999999999999998876654
No 87
>PLN02907 glutamate-tRNA ligase
Probab=98.10 E-value=1.2e-05 Score=84.60 Aligned_cols=82 Identities=9% Similarity=0.009 Sum_probs=62.6
Q ss_pred CeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHHhhcCC
Q 022996 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGD 219 (289)
Q Consensus 140 ~itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~~~y~~ 219 (289)
.++||..+.++ +.++.++|++.|++|+.+. .+|.++||+|+++ +|..|+||.||++||+++|+.
T Consensus 2 ~~kLy~~~~S~-~~~v~~~L~~lgv~~e~~~--------------~~p~GkVPvLv~d-dG~~L~ES~AIl~YLa~~~p~ 65 (722)
T PLN02907 2 EAKLSFPPDSP-PLAVIAAAKVAGVPLTIDP--------------SLKSGSAPTLLFS-SGEKLTGTNVLLRYIARSASL 65 (722)
T ss_pred eEEEEECCCCC-hHHHHHHHHHcCCCcEEee--------------cCCCCCCcEEEEC-CCCEEECHHHHHHHHHHhCCC
Confidence 48899998875 5578999999999999864 1479999999853 788999999999999999965
Q ss_pred C-CCCccc-chhhhhhHHhH
Q 022996 220 G-SVPFML-SLGLLTTLTEG 237 (289)
Q Consensus 220 ~-~~P~~l-~~~~~~~~~~~ 237 (289)
. .+|.+. .++.+...+.|
T Consensus 66 ~~L~p~d~~erAqV~qWL~~ 85 (722)
T PLN02907 66 PGFYGQDAFESSQVDEWLDY 85 (722)
T ss_pred cCCCCCCHHHHHHHHHHHHH
Confidence 4 456543 33444444443
No 88
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=97.96 E-value=2.9e-05 Score=72.38 Aligned_cols=77 Identities=18% Similarity=0.360 Sum_probs=64.9
Q ss_pred CCCeEEEEcC-------CCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHH
Q 022996 138 EKPIEIYEYE-------SCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNII 210 (289)
Q Consensus 138 ~~~itLY~~~-------~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi 210 (289)
...+-||+|+ .||||.|+-.+|+..+|+||.+.+. +...+..|++|.+.. +|..+.+|+-|+
T Consensus 43 kD~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~---------~~~rSr~G~lPFIEL--NGe~iaDS~~I~ 111 (281)
T KOG4244|consen 43 KDTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCS---------LKRRSRNGTLPFIEL--NGEHIADSDLIE 111 (281)
T ss_pred cCeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceecccc---------ceeeccCCCcceEEe--CCeeccccHHHH
Confidence 4468899996 4789999999999999999988752 235678899999998 999999999999
Q ss_pred HHHHhhcCCCC-CCcc
Q 022996 211 KYLVGKYGDGS-VPFM 225 (289)
Q Consensus 211 ~YL~~~y~~~~-~P~~ 225 (289)
.+|.++|+..+ .+.+
T Consensus 112 ~~L~~hf~~~~~L~~e 127 (281)
T KOG4244|consen 112 DRLRKHFKIPDDLSAE 127 (281)
T ss_pred HHHHHHcCCCCCCCHH
Confidence 99999998665 5543
No 89
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.96 E-value=2.4e-05 Score=56.72 Aligned_cols=58 Identities=17% Similarity=0.395 Sum_probs=45.6
Q ss_pred CeEEEEcCCCccHHHHHHHHHHc-----CCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCcccc
Q 022996 140 PIEIYEYESCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMY 204 (289)
Q Consensus 140 ~itLY~~~~cP~CrkVr~aL~e~-----gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ 204 (289)
.+++|+.++||+|.+++.+|++. +++|..+++.. .+++.+..+..++|+++. +|.+++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~-----~~~l~~~~~i~~vPti~i--~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAE-----FPDLADEYGVMSVPAIVI--NGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEccc-----CHhHHHHcCCcccCEEEE--CCEEEE
Confidence 47899999999999999999875 56677666532 246777788889999988 776654
No 90
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=97.93 E-value=1.1e-05 Score=65.65 Aligned_cols=50 Identities=20% Similarity=0.386 Sum_probs=39.3
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcc
Q 022996 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQF 191 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tV 191 (289)
|+||+.++||+|++++.+|.++|++|+++++..+.. ...++.++.....+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~-~~~el~~~~~~~~~ 50 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEEPP-SKEELKKWLEKSGL 50 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCCcc-cHHHHHHHHHHcCC
Confidence 689999999999999999999999999999865433 35566655444333
No 91
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=3.8e-06 Score=72.38 Aligned_cols=38 Identities=21% Similarity=0.257 Sum_probs=35.1
Q ss_pred hhhhcccccccccCCcceeccCCCCCCccccccccCCcccccccCCC
Q 022996 89 ALFFRFGTGVFVSGYSASFVSKDEIPPDQYTLEIAGFKVKETSKLGP 135 (289)
Q Consensus 89 ~~~~r~g~G~~~~g~~~~lv~~~~~~~~~~a~~~~g~r~~~~s~l~~ 135 (289)
-.+|.||+|+|+.+||| ++|++++ ++|.|+|||||+++
T Consensus 100 I~fi~Dg~geFTk~~Gm-~~d~~~~--------g~G~RS~RYsmvV~ 137 (165)
T COG0678 100 IKFIPDGNGEFTKAMGM-LVDKSDL--------GFGVRSWRYSMVVE 137 (165)
T ss_pred EEEecCCCchhhhhcCc-eeecccC--------CcceeeeeEEEEEe
Confidence 35689999999999999 8999999 99999999999965
No 92
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=97.75 E-value=4e-05 Score=61.17 Aligned_cols=47 Identities=17% Similarity=0.304 Sum_probs=38.5
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCC
Q 022996 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGK 188 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~ 188 (289)
|+||+.++||+|++++.+|+++|++|+++++..+.. ...++.++...
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~-~~~~l~~~~~~ 47 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLKEPP-TKEELKELLAK 47 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeeccCCC-CHHHHHHHHHh
Confidence 589999999999999999999999999999954333 35666666544
No 93
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=97.68 E-value=6.9e-05 Score=62.80 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=35.8
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHh
Q 022996 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQ 184 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~ 184 (289)
++||+.++|++|++++.+|.++||+|+++++..+.. ...++.+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~~~~-~~~eL~~ 44 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFSSPL-TIDEIKQ 44 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeeccCChh-hHHHHHH
Confidence 899999999999999999999999999999854333 2445544
No 94
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=97.66 E-value=0.0002 Score=56.90 Aligned_cols=70 Identities=11% Similarity=0.018 Sum_probs=55.9
Q ss_pred eEEEEcCCCc------cHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCC----CCcccEEEECCCCccccChHHHH
Q 022996 141 IEIYEYESCP------FCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGG----KKQFPYMVDPNTGVSMYESDNII 210 (289)
Q Consensus 141 itLY~~~~cP------~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp----~~tVP~Lvd~n~G~~I~ES~aIi 210 (289)
|+||....+. .|++|+.+|..+||+|++++|..+ +..+.++.+..+ ..+||+++. ++.+|++.+++.
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d-~~~r~em~~~~~~~~g~~tvPQIFi--~~~~iGg~ddl~ 78 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMN-EENRQWMRENVPNENGKPLPPQIFN--GDEYCGDYEAFF 78 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCC-HHHHHHHHHhcCCCCCCCCCCEEEE--CCEEeeCHHHHH
Confidence 6677665432 688999999999999999999653 445778887755 489999998 999999998887
Q ss_pred HHH
Q 022996 211 KYL 213 (289)
Q Consensus 211 ~YL 213 (289)
..-
T Consensus 79 ~l~ 81 (92)
T cd03030 79 EAK 81 (92)
T ss_pred HHH
Confidence 743
No 95
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=97.61 E-value=0.00011 Score=59.81 Aligned_cols=43 Identities=16% Similarity=0.305 Sum_probs=35.5
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHh
Q 022996 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQ 184 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~ 184 (289)
++||+.+.|++|++++.+|.++|++|+++++.....+ ..++.+
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~-~~el~~ 44 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFKQPLT-KEELKE 44 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecCCCcch-HHHHHH
Confidence 8999999999999999999999999999998544332 344443
No 96
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=97.51 E-value=0.00014 Score=59.39 Aligned_cols=42 Identities=24% Similarity=0.598 Sum_probs=34.8
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHH
Q 022996 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVL 183 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~ 183 (289)
++||+.+.||+|++++.+|+++|++|+++++.....+ ..++.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~-~~el~ 42 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGEDGPT-REELL 42 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCCChhh-HHHHH
Confidence 5899999999999999999999999999998543332 44454
No 97
>PRK12559 transcriptional regulator Spx; Provisional
Probab=97.47 E-value=0.00023 Score=59.75 Aligned_cols=43 Identities=19% Similarity=0.282 Sum_probs=36.0
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHh
Q 022996 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQ 184 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~ 184 (289)
+++|+.+.|+.|++++.+|.++|++|+++++..+... ..++.+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~~~s-~~el~~ 44 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVSNSMT-VDELKS 44 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCCcCC-HHHHHH
Confidence 8999999999999999999999999999999654443 444444
No 98
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=97.44 E-value=0.00028 Score=59.33 Aligned_cols=43 Identities=21% Similarity=0.386 Sum_probs=35.9
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHh
Q 022996 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQ 184 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~ 184 (289)
++||+.+.|+.|++++.+|.++||+|+++++.++... ..++.+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~~~s-~~eL~~ 44 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKEPLT-KEEILA 44 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCCCCC-HHHHHH
Confidence 8999999999999999999999999999999654443 344443
No 99
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=97.36 E-value=0.00037 Score=56.33 Aligned_cols=43 Identities=14% Similarity=0.352 Sum_probs=35.7
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHh
Q 022996 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQ 184 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~ 184 (289)
|++|+.++|+.|++++.+|.++|++|+++++.....+ ..++.+
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~p~s-~~eL~~ 43 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRKDGLD-AATLER 43 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccCCCC-HHHHHH
Confidence 6899999999999999999999999999999654443 344444
No 100
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=97.32 E-value=0.00047 Score=56.57 Aligned_cols=44 Identities=11% Similarity=0.090 Sum_probs=36.6
Q ss_pred CeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHh
Q 022996 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQ 184 (289)
Q Consensus 140 ~itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~ 184 (289)
.|+||+.+.|..|++++.+|+++|++|+++++.+.... ..++.+
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s-~~eL~~ 44 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHEVEVRDLLTEPWT-AETLRP 44 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEeehhcCCCC-HHHHHH
Confidence 37999999999999999999999999999999654443 444544
No 101
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00082 Score=51.80 Aligned_cols=65 Identities=18% Similarity=0.331 Sum_probs=49.0
Q ss_pred CCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCC---------ChhHHH--hhCCCCcccEEEECCCCcccc
Q 022996 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPN---------FRPKVL--QMGGKKQFPYMVDPNTGVSMY 204 (289)
Q Consensus 139 ~~itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~---------~~~e~~--~inp~~tVP~Lvd~n~G~~I~ 204 (289)
.+.+||....||-|.-+.+.|+.++++|+.++|...+.+ .+++|- +.++.-.+|+|..+ +|.++.
T Consensus 2 skp~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~-d~~vVl 77 (85)
T COG4545 2 SKPKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTD-DGKVVL 77 (85)
T ss_pred CCceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeC-CCcEEE
Confidence 345999999999999999999999999999998432222 235554 35778899999764 555443
No 102
>PRK10026 arsenate reductase; Provisional
Probab=97.21 E-value=0.0007 Score=57.88 Aligned_cols=45 Identities=18% Similarity=0.277 Sum_probs=37.4
Q ss_pred CCCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHH
Q 022996 138 EKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVL 183 (289)
Q Consensus 138 ~~~itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~ 183 (289)
|.+|+||+++.|.-|++++.+|.++|++|+++++.....+ .+++.
T Consensus 1 m~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt-~~eL~ 45 (141)
T PRK10026 1 MSNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETPPT-RDELV 45 (141)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCCCcC-HHHHH
Confidence 4579999999999999999999999999999998654443 34444
No 103
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=97.13 E-value=0.00097 Score=55.20 Aligned_cols=45 Identities=20% Similarity=0.402 Sum_probs=37.9
Q ss_pred CCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHh
Q 022996 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQ 184 (289)
Q Consensus 139 ~~itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~ 184 (289)
++|+||+.+.|--|++++.+|+++||+|+++++...+.. ++++.+
T Consensus 1 ~~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s-~~eL~~ 45 (117)
T COG1393 1 MMITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKTPPS-REELKK 45 (117)
T ss_pred CeEEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecCCCC-HHHHHH
Confidence 469999999999999999999999999999998655543 455554
No 104
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.002 Score=52.21 Aligned_cols=73 Identities=18% Similarity=0.358 Sum_probs=60.9
Q ss_pred CCCeEEEEc-----CCCccHHHHHHHHHHcC-CCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHH
Q 022996 138 EKPIEIYEY-----ESCPFCRKVREIVAVLD-LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIK 211 (289)
Q Consensus 138 ~~~itLY~~-----~~cP~CrkVr~aL~e~g-I~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~ 211 (289)
..++.||.+ +.|.|+.++-.+|...| ++|..++|..+ +..|..+++.+.--|+|+|.. +|..+++|+-|.+
T Consensus 14 ~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d-~eiR~~lk~~s~WPT~PQLyi--~GEfvGG~DIv~E 90 (105)
T COG0278 14 ENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQD-PEIRQGLKEYSNWPTFPQLYV--NGEFVGGCDIVRE 90 (105)
T ss_pred cCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccC-HHHHhccHhhcCCCCCceeeE--CCEEeccHHHHHH
Confidence 456888854 78999999999999999 79999999654 456788888999999999988 8999999887665
Q ss_pred HH
Q 022996 212 YL 213 (289)
Q Consensus 212 YL 213 (289)
-.
T Consensus 91 m~ 92 (105)
T COG0278 91 MY 92 (105)
T ss_pred HH
Confidence 43
No 105
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=96.97 E-value=0.0074 Score=44.70 Aligned_cols=54 Identities=20% Similarity=0.319 Sum_probs=38.4
Q ss_pred CeEEEEcCCCccHHHHHHHHHH----cCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEE
Q 022996 140 PIEIYEYESCPFCRKVREIVAV----LDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVD 196 (289)
Q Consensus 140 ~itLY~~~~cP~CrkVr~aL~e----~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd 196 (289)
.++||+.++||+|.++.-.|.+ .+..+....++.+. .++..+..+-..+|+++.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~vPt~~~ 59 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVME---NPQKAMEYGIMAVPAIVI 59 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCcc---CHHHHHHcCCccCCEEEE
Confidence 4789999999999999888764 34444444443211 245666678889999987
No 106
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=96.89 E-value=0.0021 Score=53.75 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=36.0
Q ss_pred CeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHH
Q 022996 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVL 183 (289)
Q Consensus 140 ~itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~ 183 (289)
.++||+++.|.-|+|++.+|.++|++|+++++.+.+.+ .+++.
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t-~~eL~ 44 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDILKEPWH-ADTLR 44 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccCCCcC-HHHHH
Confidence 58999999999999999999999999999998654443 34443
No 107
>PRK10853 putative reductase; Provisional
Probab=96.81 E-value=0.0023 Score=52.84 Aligned_cols=43 Identities=14% Similarity=0.308 Sum_probs=36.1
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHh
Q 022996 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQ 184 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~ 184 (289)
++||+++.|.-|++++.+|+++|++|+++++.+.... .+++.+
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s-~~eL~~ 44 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRVDGLD-SELLQG 44 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehccCCcC-HHHHHH
Confidence 8999999999999999999999999999998654443 444544
No 108
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=96.79 E-value=0.0057 Score=46.12 Aligned_cols=56 Identities=20% Similarity=0.346 Sum_probs=42.1
Q ss_pred CCeEEEEcCCCccHHHH----HHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccc
Q 022996 139 KPIEIYEYESCPFCRKV----REIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM 203 (289)
Q Consensus 139 ~~itLY~~~~cP~CrkV----r~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I 203 (289)
|.+.+|. .+||+|..+ ..++.+.|++++++.+.. .++ ....+-..+|+++. +|..+
T Consensus 1 m~i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~-----~~~-a~~~~v~~vPti~i--~G~~~ 60 (76)
T TIGR00412 1 MKIQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTD-----MNE-ILEAGVTATPGVAV--DGELV 60 (76)
T ss_pred CEEEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC-----HHH-HHHcCCCcCCEEEE--CCEEE
Confidence 3578887 999999998 678888999999888742 123 34467789999988 66433
No 109
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.74 E-value=0.012 Score=44.91 Aligned_cols=51 Identities=16% Similarity=0.423 Sum_probs=37.7
Q ss_pred CeEEEEcCCCccHHHHHHHHHHcC----CCeEEEEcCCCCCCChhHHHhhCCCCcccEEEE
Q 022996 140 PIEIYEYESCPFCRKVREIVAVLD----LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVD 196 (289)
Q Consensus 140 ~itLY~~~~cP~CrkVr~aL~e~g----I~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd 196 (289)
+++||+.++|+-|..++..|.... +.++.++|.. .+++.+..+. .||||..
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~-----d~~l~~~Y~~-~IPVl~~ 55 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDE-----DPELFEKYGY-RIPVLHI 55 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTT-----THHHHHHSCT-STSEEEE
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCC-----CHHHHHHhcC-CCCEEEE
Confidence 489999999999999999999643 4455566542 2567777774 8999987
No 110
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=96.63 E-value=0.004 Score=50.83 Aligned_cols=43 Identities=14% Similarity=0.282 Sum_probs=35.5
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHh
Q 022996 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQ 184 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~ 184 (289)
|+||+.+.|.-|+|++.+|+++|++|+++++.+...+ ..++.+
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t-~~el~~ 43 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLKNPPT-KSELEA 43 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccCCCcC-HHHHHH
Confidence 5899999999999999999999999999998654443 344443
No 111
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=96.62 E-value=0.0042 Score=50.53 Aligned_cols=37 Identities=16% Similarity=0.301 Sum_probs=32.9
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCC
Q 022996 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPN 177 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~ 177 (289)
|+||+++.|.-|++++.+|+++|++|+++++.+...+
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~~~t 37 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYLKTPPT 37 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecccCCcC
Confidence 6899999999999999999999999999998654443
No 112
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=96.44 E-value=0.011 Score=44.86 Aligned_cols=57 Identities=21% Similarity=0.325 Sum_probs=47.3
Q ss_pred CCccHHHHHHHHHHcCCC---eEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHH
Q 022996 148 SCPFCRKVREIVAVLDLD---VLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (289)
Q Consensus 148 ~cP~CrkVr~aL~e~gI~---ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~ 214 (289)
-+|.|.++.++|+..+.+ |+.+... ++ .++|.+++|+|++ +++.++.+-.+|++||.
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~--n~-------~~Sptg~LP~L~~-~~~~~vsg~~~Iv~yL~ 72 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSN--NP-------WLSPTGELPALID-SGGTWVSGFRNIVEYLR 72 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcC--CC-------CcCCCCCCCEEEE-CCCcEEECHHHHHHhhC
Confidence 368999999999999999 7776642 12 2679999999998 37889999999999983
No 113
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=96.31 E-value=0.013 Score=38.62 Aligned_cols=54 Identities=20% Similarity=0.337 Sum_probs=39.5
Q ss_pred eEEEEcCCCccHHHHHHHHH-----HcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEE
Q 022996 141 IEIYEYESCPFCRKVREIVA-----VLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVD 196 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~-----e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd 196 (289)
+.+|...+|++|.+++..+. ..++.+..+++..... ........+...+|+++.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~P~~~~ 59 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPA--LEKELKRYGVGGVPTLVV 59 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChH--HhhHHHhCCCccccEEEE
Confidence 46788899999999999999 4677777777643221 122235788889999965
No 114
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=96.18 E-value=0.015 Score=45.50 Aligned_cols=60 Identities=15% Similarity=0.179 Sum_probs=44.7
Q ss_pred CCCeEEEEcCCCccHHHHHHHHHHc-----CCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCcccc
Q 022996 138 EKPIEIYEYESCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMY 204 (289)
Q Consensus 138 ~~~itLY~~~~cP~CrkVr~aL~e~-----gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ 204 (289)
+-.|.+|..++|++|..+..++.+. ++.++.+++.. -++..+..+-..+|.++. +|..++
T Consensus 13 pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~-----~~e~a~~~~V~~vPt~vi--dG~~~~ 77 (89)
T cd03026 13 PINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGAL-----FQDEVEERGIMSVPAIFL--NGELFG 77 (89)
T ss_pred CEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHh-----CHHHHHHcCCccCCEEEE--CCEEEE
Confidence 3458999999999999988877664 56777776532 256777778889999987 665443
No 115
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=96.13 E-value=0.023 Score=42.66 Aligned_cols=57 Identities=18% Similarity=0.366 Sum_probs=39.9
Q ss_pred CCeEEEEcCCCccHHHHHH----HHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCcccc
Q 022996 139 KPIEIYEYESCPFCRKVRE----IVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMY 204 (289)
Q Consensus 139 ~~itLY~~~~cP~CrkVr~----aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ 204 (289)
|.|++ ..++||+|.++.. ++.+.|+.++.+++ . + .+++ +..+-..+|.|+. ||.+.+
T Consensus 1 m~I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~-~-~---~~~~-~~ygv~~vPalvI--ng~~~~ 61 (76)
T PF13192_consen 1 MKIKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDI-E-D---FEEI-EKYGVMSVPALVI--NGKVVF 61 (76)
T ss_dssp EEEEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEET-T-T---HHHH-HHTT-SSSSEEEE--TTEEEE
T ss_pred CEEEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEc-c-C---HHHH-HHcCCCCCCEEEE--CCEEEE
Confidence 35778 4567999996655 56667888877775 2 1 3455 7788899999988 776543
No 116
>PHA02125 thioredoxin-like protein
Probab=95.86 E-value=0.02 Score=42.78 Aligned_cols=51 Identities=18% Similarity=0.383 Sum_probs=40.0
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEE
Q 022996 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVD 196 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd 196 (289)
+++|+.++|++|+++...|+. +.++...++.+ + ..++.+..+-..+|++++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~--~~~~~~~vd~~-~--~~~l~~~~~v~~~PT~~~ 52 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLAN--VEYTYVDVDTD-E--GVELTAKHHIRSLPTLVN 52 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHH--HhheEEeeeCC-C--CHHHHHHcCCceeCeEEC
Confidence 889999999999999999875 45666666432 2 357888888889999984
No 117
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.026 Score=51.71 Aligned_cols=75 Identities=15% Similarity=0.264 Sum_probs=62.2
Q ss_pred CCCCeEEEEc-----CCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHH
Q 022996 137 PEKPIEIYEY-----ESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIK 211 (289)
Q Consensus 137 ~~~~itLY~~-----~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~ 211 (289)
...+++||.. +.|.|++++.-.|.++|++|...+|.. ++..|..+++.+.--|+|+|.. +|..+++++-|..
T Consensus 137 ~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~-DeelRqglK~fSdWPTfPQlyI--~GEFiGGlDIl~~ 213 (227)
T KOG0911|consen 137 KAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLT-DEELRQGLKEFSDWPTFPQLYV--KGEFIGGLDILKE 213 (227)
T ss_pred ccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccC-CHHHHHHhhhhcCCCCccceeE--CCEeccCcHHHHH
Confidence 4456888865 689999999999999999999999965 3446777888899999999988 8999998877665
Q ss_pred HHH
Q 022996 212 YLV 214 (289)
Q Consensus 212 YL~ 214 (289)
-+.
T Consensus 214 m~~ 216 (227)
T KOG0911|consen 214 MHE 216 (227)
T ss_pred Hhh
Confidence 543
No 118
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=94.69 E-value=0.052 Score=43.66 Aligned_cols=33 Identities=15% Similarity=0.338 Sum_probs=25.0
Q ss_pred EEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCC
Q 022996 144 YEYESCPFCRKVREIVAVLDLDVLYYPCPRNGP 176 (289)
Q Consensus 144 Y~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~ 176 (289)
|+.+.|.-|++++.+|+++|++|+++++.+...
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~k~p~ 33 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYKKEPL 33 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETTTS--
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhhhCCC
Confidence 889999999999999999999999999865433
No 119
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=93.88 E-value=0.26 Score=40.75 Aligned_cols=69 Identities=26% Similarity=0.497 Sum_probs=48.1
Q ss_pred CCccHHHHHHHHHH-----cCCCeEEEEcCCCCCCChhHHHhhCC--CCcccEEEECCCC------------ccccChHH
Q 022996 148 SCPFCRKVREIVAV-----LDLDVLYYPCPRNGPNFRPKVLQMGG--KKQFPYMVDPNTG------------VSMYESDN 208 (289)
Q Consensus 148 ~cP~CrkVr~aL~e-----~gI~ye~~~V~~~~~~~~~e~~~inp--~~tVP~Lvd~n~G------------~~I~ES~a 208 (289)
.||.|..+.=+|.. ..++++.+... .+ +.++.+.-| .+..|+||..++. ..|.+...
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~--RP--R~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~ 98 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFP--RP--RQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRR 98 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCC--Cc--hHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHH
Confidence 49999998877765 34455554442 23 466666544 4689999875222 27899999
Q ss_pred HHHHHHhhcCCC
Q 022996 209 IIKYLVGKYGDG 220 (289)
Q Consensus 209 Ii~YL~~~y~~~ 220 (289)
|++||+++|+.+
T Consensus 99 I~~~La~r~g~p 110 (112)
T PF11287_consen 99 ILRYLAERHGFP 110 (112)
T ss_pred HHHHHHHHcCCC
Confidence 999999999853
No 120
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=93.67 E-value=0.21 Score=40.31 Aligned_cols=73 Identities=11% Similarity=0.008 Sum_probs=47.6
Q ss_pred CCeEEEEcCCCc------cHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhC---------CCCcccEEEECCCCccc
Q 022996 139 KPIEIYEYESCP------FCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMG---------GKKQFPYMVDPNTGVSM 203 (289)
Q Consensus 139 ~~itLY~~~~cP------~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~in---------p~~tVP~Lvd~n~G~~I 203 (289)
|.|+||....+. .|.++..+|..++|+|+.++|.. ++..+.++.+.. +..-.|+|+. ++..+
T Consensus 1 m~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~-~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~--~~~Y~ 77 (99)
T PF04908_consen 1 MVIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAM-DEEARQWMRENAGPEEKDPGNGKPLPPQIFN--GDEYC 77 (99)
T ss_dssp -SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT--HHHHHHHHHHT--CCCS-TSTT--S-EEEE--TTEEE
T ss_pred CEEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcC-CHHHHHHHHHhccccccCCCCCCCCCCEEEe--CCEEE
Confidence 468888876554 56789999999999999999965 344567777655 3335579987 88888
Q ss_pred cChHHHHHHHH
Q 022996 204 YESDNIIKYLV 214 (289)
Q Consensus 204 ~ES~aIi~YL~ 214 (289)
++=+++.+.-+
T Consensus 78 Gdye~f~ea~E 88 (99)
T PF04908_consen 78 GDYEDFEEANE 88 (99)
T ss_dssp EEHHHHHHHHC
T ss_pred eeHHHHHHHHh
Confidence 87666665443
No 121
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.33 E-value=0.42 Score=45.16 Aligned_cols=105 Identities=17% Similarity=0.193 Sum_probs=66.8
Q ss_pred CCeEEEEcCCCccHHHHHHHHHHcCCC----eEEE-Ec-CCCCCCCh-------------------------hHHHh---
Q 022996 139 KPIEIYEYESCPFCRKVREIVAVLDLD----VLYY-PC-PRNGPNFR-------------------------PKVLQ--- 184 (289)
Q Consensus 139 ~~itLY~~~~cP~CrkVr~aL~e~gI~----ye~~-~V-~~~~~~~~-------------------------~e~~~--- 184 (289)
..+-||....|||+.|..++++.+|++ +... ++ +.+|..+. .|+..
T Consensus 36 gryhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~ 115 (319)
T KOG2903|consen 36 GRYHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIAS 115 (319)
T ss_pred ceEEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcC
Confidence 678999999999999999999999986 2221 21 11111110 12221
Q ss_pred --hCCCCcccEEEECCCC-ccccChHHHHHHHH---hhcCC-C------CCCcccchhhhhhHHhHHHHHhhc
Q 022996 185 --MGGKKQFPYMVDPNTG-VSMYESDNIIKYLV---GKYGD-G------SVPFMLSLGLLTTLTEGFAMIGRL 244 (289)
Q Consensus 185 --inp~~tVP~Lvd~n~G-~~I~ES~aIi~YL~---~~y~~-~------~~P~~l~~~~~~~~~~~~a~i~R~ 244 (289)
-.|+-+||+|-|-... .+-.||.+||+.+. +.|-. + .+|..++ ..+++.-.|.....-+
T Consensus 116 p~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~~L~-~~Ide~N~wvy~~INN 187 (319)
T KOG2903|consen 116 PNYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPSSLR-AQIDETNSWVYDKINN 187 (319)
T ss_pred CCCCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCHHHH-HHHhhhhceecccccC
Confidence 1456799999884333 36789999999999 44422 1 2555443 4567777887654444
No 122
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=93.02 E-value=0.45 Score=39.16 Aligned_cols=63 Identities=19% Similarity=0.265 Sum_probs=37.6
Q ss_pred CCeEEEEcCCCccHHHHHHHH----HHcCCCeEEEEcCCCC--CCCh----hHHHhhC----CCCcccEEEECCCCc
Q 022996 139 KPIEIYEYESCPFCRKVREIV----AVLDLDVLYYPCPRNG--PNFR----PKVLQMG----GKKQFPYMVDPNTGV 201 (289)
Q Consensus 139 ~~itLY~~~~cP~CrkVr~aL----~e~gI~ye~~~V~~~~--~~~~----~e~~~in----p~~tVP~Lvd~n~G~ 201 (289)
.-+..|+.++||+|+.+.-.| ++.++++-.++++.+. +... .+|.+.. +-..+|.++.=++|.
T Consensus 25 ~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk 101 (122)
T TIGR01295 25 TATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGK 101 (122)
T ss_pred cEEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCe
Confidence 347778899999999865444 4455777777775322 1111 2444443 344599995423664
No 123
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=92.98 E-value=0.067 Score=54.03 Aligned_cols=72 Identities=13% Similarity=0.188 Sum_probs=49.1
Q ss_pred CCCeEEEEcCCCccHHHHHHHHHHcC-----CCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccCh----HH
Q 022996 138 EKPIEIYEYESCPFCRKVREIVAVLD-----LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYES----DN 208 (289)
Q Consensus 138 ~~~itLY~~~~cP~CrkVr~aL~e~g-----I~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES----~a 208 (289)
...+++|..+.||||..|..++.+.. |..+.++ .+.-+++.+...-..||.++. +|..+++. .+
T Consensus 118 ~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id-----~~~~~~~~~~~~v~~VP~~~i--~~~~~~~g~~~~~~ 190 (515)
T TIGR03140 118 PLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMID-----GALFQDEVEALGIQGVPAVFL--NGEEFHNGRMDLAE 190 (515)
T ss_pred CeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEE-----chhCHHHHHhcCCcccCEEEE--CCcEEEecCCCHHH
Confidence 44699999999999999887776643 3333333 223467788888889999988 55544442 45
Q ss_pred HHHHHHhh
Q 022996 209 IIKYLVGK 216 (289)
Q Consensus 209 Ii~YL~~~ 216 (289)
+++.+.+.
T Consensus 191 ~~~~l~~~ 198 (515)
T TIGR03140 191 LLEKLEET 198 (515)
T ss_pred HHHHHhhc
Confidence 55666544
No 124
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=92.83 E-value=0.47 Score=34.30 Aligned_cols=59 Identities=10% Similarity=0.201 Sum_probs=41.3
Q ss_pred CCCeEEEEcCCCccHHHHHHHHHH-----cCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCc
Q 022996 138 EKPIEIYEYESCPFCRKVREIVAV-----LDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGV 201 (289)
Q Consensus 138 ~~~itLY~~~~cP~CrkVr~aL~e-----~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~ 201 (289)
..-+.+|+.++|++|+++...+.+ .++.+..+++.. ..++.+..+-..+|+++.-++|.
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~~~~~~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDE-----NPELAEEYGVRSIPTFLFFKNGK 74 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCC-----ChhHHHhcCcccccEEEEEECCE
Confidence 344778888999999999988877 666666666532 24566677778899984322443
No 125
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=92.77 E-value=0.076 Score=53.59 Aligned_cols=75 Identities=13% Similarity=0.151 Sum_probs=51.8
Q ss_pred CCCCeEEEEcCCCccHHHHHHHHHHcC-----CCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccC----hH
Q 022996 137 PEKPIEIYEYESCPFCRKVREIVAVLD-----LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYE----SD 207 (289)
Q Consensus 137 ~~~~itLY~~~~cP~CrkVr~aL~e~g-----I~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~E----S~ 207 (289)
....|++|..+.||||..+..++.+.- |..+.++ .+.-+++.+...-..||.++. +|..+++ -.
T Consensus 116 ~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id-----~~~~~~~~~~~~v~~VP~~~i--~~~~~~~g~~~~~ 188 (517)
T PRK15317 116 GDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMID-----GALFQDEVEARNIMAVPTVFL--NGEEFGQGRMTLE 188 (517)
T ss_pred CCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEE-----chhCHhHHHhcCCcccCEEEE--CCcEEEecCCCHH
Confidence 345699999999999999887776543 3344333 223477888888889999988 5554444 35
Q ss_pred HHHHHHHhhcC
Q 022996 208 NIIKYLVGKYG 218 (289)
Q Consensus 208 aIi~YL~~~y~ 218 (289)
.|+..+.+..+
T Consensus 189 ~~~~~~~~~~~ 199 (517)
T PRK15317 189 EILAKLDTGAA 199 (517)
T ss_pred HHHHHHhcccc
Confidence 67777766544
No 126
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=92.30 E-value=0.31 Score=43.56 Aligned_cols=74 Identities=18% Similarity=0.296 Sum_probs=45.2
Q ss_pred CCCeEEEEcCCCccHHHHHHHHHHcCC---CeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCc-ccc--ChHHHHH
Q 022996 138 EKPIEIYEYESCPFCRKVREIVAVLDL---DVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGV-SMY--ESDNIIK 211 (289)
Q Consensus 138 ~~~itLY~~~~cP~CrkVr~aL~e~gI---~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~-~I~--ES~aIi~ 211 (289)
.-.|++|+.++||+|..+..++.+.-- .+....++.. ..+++.+..+-..+|+++.-++|. ..+ .-..+..
T Consensus 134 pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~---~~~~~~~~~~V~~vPtl~i~~~~~~~~G~~~~~~l~~ 210 (215)
T TIGR02187 134 PVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEAN---ENPDLAEKYGVMSVPKIVINKGVEEFVGAYPEEQFLE 210 (215)
T ss_pred CcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCC---CCHHHHHHhCCccCCEEEEecCCEEEECCCCHHHHHH
Confidence 345788999999999999888776321 2332333221 135777888888999996532443 222 1234555
Q ss_pred HHH
Q 022996 212 YLV 214 (289)
Q Consensus 212 YL~ 214 (289)
+|.
T Consensus 211 ~l~ 213 (215)
T TIGR02187 211 YIL 213 (215)
T ss_pred HHH
Confidence 554
No 127
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=92.20 E-value=0.17 Score=40.80 Aligned_cols=52 Identities=15% Similarity=0.402 Sum_probs=36.4
Q ss_pred CeEEE-EcCCCccHHHHHHHHHHcC-----CCeEEEEcCCCCCCChhHHHhhCCCCcccEEEE
Q 022996 140 PIEIY-EYESCPFCRKVREIVAVLD-----LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVD 196 (289)
Q Consensus 140 ~itLY-~~~~cP~CrkVr~aL~e~g-----I~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd 196 (289)
.+++| +.++|++|+.++.+|.+.. +.+..+++.. .+++.+..+-..+|.++.
T Consensus 24 ~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~-----~~~l~~~~~v~~vPt~~i 81 (113)
T cd02975 24 DLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDE-----DKEKAEKYGVERVPTTIF 81 (113)
T ss_pred EEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCc-----CHHHHHHcCCCcCCEEEE
Confidence 45555 5689999999988887643 3344444321 367888889999999954
No 128
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=92.13 E-value=0.46 Score=48.58 Aligned_cols=59 Identities=17% Similarity=0.201 Sum_probs=44.0
Q ss_pred CCCeEEEEcCCCccHHHHHHH----HHHc-CCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccc
Q 022996 138 EKPIEIYEYESCPFCRKVREI----VAVL-DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM 203 (289)
Q Consensus 138 ~~~itLY~~~~cP~CrkVr~a----L~e~-gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I 203 (289)
...|++|..++||+|-++..+ ..++ +|.++.+++.. -+++.+..+-..||.++. ||.++
T Consensus 477 ~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~-----~~~~~~~~~v~~vP~~~i--~~~~~ 540 (555)
T TIGR03143 477 PVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSH-----FPDLKDEYGIMSVPAIVV--DDQQV 540 (555)
T ss_pred CeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcc-----cHHHHHhCCceecCEEEE--CCEEE
Confidence 345899999999999987654 4455 68888877632 257787888889999988 66433
No 129
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=91.76 E-value=0.63 Score=35.90 Aligned_cols=61 Identities=11% Similarity=0.148 Sum_probs=39.0
Q ss_pred CCCCeEEEEcCCCccHHHHHHHHHH------cCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCcc
Q 022996 137 PEKPIEIYEYESCPFCRKVREIVAV------LDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVS 202 (289)
Q Consensus 137 ~~~~itLY~~~~cP~CrkVr~aL~e------~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~ 202 (289)
....+.+|..++|+.|+.....+.+ .++.+..++++. .+++.+..+-..+|.++.-++|..
T Consensus 13 ~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~-----~~~l~~~~~v~~vPt~~i~~~g~~ 79 (97)
T cd02949 13 DRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDE-----DQEIAEAAGIMGTPTVQFFKDKEL 79 (97)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCC-----CHHHHHHCCCeeccEEEEEECCeE
Confidence 3345778888999999998877765 223333333321 356777777789999843225543
No 130
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.80 E-value=1 Score=42.92 Aligned_cols=105 Identities=19% Similarity=0.274 Sum_probs=68.0
Q ss_pred CCCCeEEEEcCCCccHHHHHHHHHHcCCC--eEEEEc----CCCCCCChhH------------------HH----hhCCC
Q 022996 137 PEKPIEIYEYESCPFCRKVREIVAVLDLD--VLYYPC----PRNGPNFRPK------------------VL----QMGGK 188 (289)
Q Consensus 137 ~~~~itLY~~~~cP~CrkVr~aL~e~gI~--ye~~~V----~~~~~~~~~e------------------~~----~inp~ 188 (289)
......||...+||++.|..++=+.+|++ +....+ ..+|..+.++ |. +-++.
T Consensus 48 e~GRYhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgR 127 (324)
T COG0435 48 EKGRYHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGR 127 (324)
T ss_pred CCCeEEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCc
Confidence 44579999999999999999999999986 222222 1233322222 11 12567
Q ss_pred CcccEEEECCCCc-cccChHHHHHHHHhhcCC------CCCCcccchhhhhhHHhHHHHHh
Q 022996 189 KQFPYMVDPNTGV-SMYESDNIIKYLVGKYGD------GSVPFMLSLGLLTTLTEGFAMIG 242 (289)
Q Consensus 189 ~tVP~Lvd~n~G~-~I~ES~aIi~YL~~~y~~------~~~P~~l~~~~~~~~~~~~a~i~ 242 (289)
-+||+|.|....+ +-.||.+||+-|...|+. ..+|.+++ ..++.+..|.....
T Consensus 128 vTVPVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~~Lr-~eId~~n~~Iy~~v 187 (324)
T COG0435 128 VTVPVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPEALR-TEIDELNKWIYDTV 187 (324)
T ss_pred eeEEEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCHHHH-HHHHHHHhhhcccc
Confidence 7999999854443 678999999999877742 24676653 24455555554333
No 131
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=89.72 E-value=0.12 Score=38.49 Aligned_cols=29 Identities=59% Similarity=1.063 Sum_probs=25.9
Q ss_pred HHHHHhhhChHHHHHHHHhhhCCCCceec
Q 022996 260 LEVWAYEGSPFCKVVREVLVELELPHLQR 288 (289)
Q Consensus 260 l~~~~~e~spF~~~vre~L~elelp~~~~ 288 (289)
+.+|.+..||||+.|+..|.|+.+||-.+
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~ 30 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILY 30 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEE
Confidence 45788899999999999999999999764
No 132
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=89.45 E-value=3.1 Score=31.27 Aligned_cols=76 Identities=13% Similarity=0.292 Sum_probs=48.3
Q ss_pred CCCeEEEEcCCCccHHHHHHHHHH----cCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccc------cChH
Q 022996 138 EKPIEIYEYESCPFCRKVREIVAV----LDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM------YESD 207 (289)
Q Consensus 138 ~~~itLY~~~~cP~CrkVr~aL~e----~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I------~ES~ 207 (289)
..-+..|+.++|+.|+..+-.+.+ .+-++....++.. . ..++.+..+-..+|.++.=.+|..+ .+..
T Consensus 18 ~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~-~--~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~ 94 (103)
T PF00085_consen 18 KPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCD-E--NKELCKKYGVKSVPTIIFFKNGKEVKRYNGPRNAE 94 (103)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETT-T--SHHHHHHTTCSSSSEEEEEETTEEEEEEESSSSHH
T ss_pred CCEEEEEeCCCCCccccccceecccccccccccccchhhhh-c--cchhhhccCCCCCCEEEEEECCcEEEEEECCCCHH
Confidence 445677788999999988755533 2224455444322 1 2678888888999999432255322 3567
Q ss_pred HHHHHHHhh
Q 022996 208 NIIKYLVGK 216 (289)
Q Consensus 208 aIi~YL~~~ 216 (289)
.|..||.++
T Consensus 95 ~l~~~i~~~ 103 (103)
T PF00085_consen 95 SLIEFIEKH 103 (103)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHcC
Confidence 888888653
No 133
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.26 E-value=2.7 Score=38.62 Aligned_cols=66 Identities=14% Similarity=0.169 Sum_probs=52.8
Q ss_pred CCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHHhhc
Q 022996 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKY 217 (289)
Q Consensus 139 ~~itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~~~y 217 (289)
..+-|+.+. .|-.|..+|+..++||.++-.+. .|| ++|.|+||.|.. |.+++.|-..|+.+...+-
T Consensus 27 eQiLl~d~a---scLAVqtfLrMcnLPf~v~~~~N------aef--mSP~G~vPllr~--g~~~~aef~pIV~fVeak~ 92 (257)
T KOG3027|consen 27 EQILLPDNA---SCLAVQTFLRMCNLPFNVRQRAN------AEF--MSPGGKVPLLRI--GKTLFAEFEPIVDFVEAKG 92 (257)
T ss_pred cccccccch---hHHHHHHHHHHcCCCceeeecCC------ccc--cCCCCCCceeee--cchhhhhhhHHHHHHHHhc
Confidence 445666543 48999999999999999887632 123 578889999988 8889999999999998764
No 134
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=87.03 E-value=3.8 Score=35.06 Aligned_cols=79 Identities=14% Similarity=0.103 Sum_probs=54.8
Q ss_pred CCCCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcc-cE--EEECCCCccccChHHHHHHH
Q 022996 137 PEKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQF-PY--MVDPNTGVSMYESDNIIKYL 213 (289)
Q Consensus 137 ~~~~itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tV-P~--Lvd~n~G~~I~ES~aIi~YL 213 (289)
+..++++++.-.||+|-....+|..++..-.++....+++. ...+++..|...- +- +.+ ++|....+|+|+++=+
T Consensus 6 ~~p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~-g~~~l~~~~l~~~~~~s~~~~-~~g~~~~~sdA~~~i~ 83 (137)
T COG3011 6 KKPDLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSEP-GQALLEAAGLDPEDVDSVLLV-EAGQLLVGSDAAIRIL 83 (137)
T ss_pred CCCCEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCch-hhhHHhhcCCChhhhheeeEe-cCCceEeccHHHHHHH
Confidence 34457778888999999999999998887655555433432 3456666665522 22 233 3889999999999988
Q ss_pred Hhhc
Q 022996 214 VGKY 217 (289)
Q Consensus 214 ~~~y 217 (289)
...-
T Consensus 84 ~~L~ 87 (137)
T COG3011 84 RLLP 87 (137)
T ss_pred HHCC
Confidence 7654
No 135
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=86.47 E-value=7.7 Score=32.49 Aligned_cols=84 Identities=13% Similarity=0.178 Sum_probs=47.0
Q ss_pred CCeEEEEcCCCccHHHHHHHHHHc------CCCeEEEEcCCCCCCChhHHHhhCCCCcccEEE-ECCCCcccc------C
Q 022996 139 KPIEIYEYESCPFCRKVREIVAVL------DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV-DPNTGVSMY------E 205 (289)
Q Consensus 139 ~~itLY~~~~cP~CrkVr~aL~e~------gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lv-d~n~G~~I~------E 205 (289)
.-+..|+-.||++|++..-.+.+. ++.|..+.++. . ...++.+..+-..+|.++ ...+|.++. .
T Consensus 22 ~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~--~-~~~~~~~~~~V~~iPt~v~~~~~G~~v~~~~G~~~ 98 (142)
T cd02950 22 PTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDN--P-KWLPEIDRYRVDGIPHFVFLDREGNEEGQSIGLQP 98 (142)
T ss_pred EEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCC--c-ccHHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCC
Confidence 345667778999999877665432 23344444322 1 123566667777899884 322554332 2
Q ss_pred hHHHHHHHHhhcCCCCCCcc
Q 022996 206 SDNIIKYLVGKYGDGSVPFM 225 (289)
Q Consensus 206 S~aIi~YL~~~y~~~~~P~~ 225 (289)
-..|...|.+.......|..
T Consensus 99 ~~~l~~~l~~l~~~~~~~~~ 118 (142)
T cd02950 99 KQVLAQNLDALVAGEPLPYA 118 (142)
T ss_pred HHHHHHHHHHHHcCCCCCcc
Confidence 35566666665544444433
No 136
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.43 E-value=0.96 Score=42.81 Aligned_cols=73 Identities=15% Similarity=0.276 Sum_probs=56.7
Q ss_pred CCeEEEEcCCC------ccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCC----CcccEEEECCCCccccChHH
Q 022996 139 KPIEIYEYESC------PFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGK----KQFPYMVDPNTGVSMYESDN 208 (289)
Q Consensus 139 ~~itLY~~~~c------P~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~----~tVP~Lvd~n~G~~I~ES~a 208 (289)
..+++|.--.- --|..||.+|+-.++-|++++|..+. .++.|+..+-+. -..|.++. +|..|+....
T Consensus 131 ~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~-~fr~EL~~~lg~~~~~~~LPrVFV--~GryIGgaee 207 (281)
T KOG2824|consen 131 DRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDS-EFREELQELLGEDEKAVSLPRVFV--KGRYIGGAEE 207 (281)
T ss_pred ceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccH-HHHHHHHHHHhcccccCccCeEEE--ccEEeccHHH
Confidence 47888865321 25899999999999999999997643 357888776554 48899988 8999999998
Q ss_pred HHHHHH
Q 022996 209 IIKYLV 214 (289)
Q Consensus 209 Ii~YL~ 214 (289)
|++--+
T Consensus 208 V~~LnE 213 (281)
T KOG2824|consen 208 VVRLNE 213 (281)
T ss_pred hhhhhh
Confidence 886443
No 137
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=86.33 E-value=1.2 Score=33.34 Aligned_cols=74 Identities=12% Similarity=0.169 Sum_probs=41.8
Q ss_pred CCeEEEEcCCCccHHHHHHHHHHc----CCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCcc---c---cChHH
Q 022996 139 KPIEIYEYESCPFCRKVREIVAVL----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVS---M---YESDN 208 (289)
Q Consensus 139 ~~itLY~~~~cP~CrkVr~aL~e~----gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~---I---~ES~a 208 (289)
.-+..|+.++|++|+.....+... +-.+....++.. ..+++.+..+-..+|.++.=++|.. + ....+
T Consensus 16 ~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~---~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~ 92 (101)
T TIGR01068 16 PVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVD---ENPDIAAKYGIRSIPTLLLFKNGKEVDRSVGALPKAA 92 (101)
T ss_pred cEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECC---CCHHHHHHcCCCcCCEEEEEeCCcEeeeecCCCCHHH
Confidence 345666778999999887666442 212333333221 1246667777779999843124432 1 12466
Q ss_pred HHHHHHh
Q 022996 209 IIKYLVG 215 (289)
Q Consensus 209 Ii~YL~~ 215 (289)
|..+|.+
T Consensus 93 l~~~l~~ 99 (101)
T TIGR01068 93 LKQLINK 99 (101)
T ss_pred HHHHHHh
Confidence 6666654
No 138
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=86.16 E-value=1 Score=41.23 Aligned_cols=36 Identities=25% Similarity=0.597 Sum_probs=25.8
Q ss_pred CCCeEEEEcCCCccHHHHHHHHHHc---CCCeEEEEcCC
Q 022996 138 EKPIEIYEYESCPFCRKVREIVAVL---DLDVLYYPCPR 173 (289)
Q Consensus 138 ~~~itLY~~~~cP~CrkVr~aL~e~---gI~ye~~~V~~ 173 (289)
...|.+|+.+.||||+|...-+... |+.+.+...+.
T Consensus 108 k~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~ 146 (232)
T PRK10877 108 KHVITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPR 146 (232)
T ss_pred CEEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccC
Confidence 3458899999999999998887764 34444444443
No 139
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=86.02 E-value=1.3 Score=38.74 Aligned_cols=37 Identities=22% Similarity=0.599 Sum_probs=27.9
Q ss_pred CCCCeEEEEcCCCccHHHHHHHHHH--cCCCeEEEEcCC
Q 022996 137 PEKPIEIYEYESCPFCRKVREIVAV--LDLDVLYYPCPR 173 (289)
Q Consensus 137 ~~~~itLY~~~~cP~CrkVr~aL~e--~gI~ye~~~V~~ 173 (289)
....+.+|+.+.||||++....+.. .++.+..+.++.
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~p~ 115 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPVPI 115 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhhccCceEEEEEEcCc
Confidence 3457889999999999999998874 455566665543
No 140
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=85.89 E-value=2.9 Score=33.54 Aligned_cols=58 Identities=12% Similarity=0.265 Sum_probs=33.0
Q ss_pred CCCeEEEEcCCCccHHHHHHHHH-------H--cCCCeEEEEcCCCCC--------CChhHHHhhCCCCcccEEE
Q 022996 138 EKPIEIYEYESCPFCRKVREIVA-------V--LDLDVLYYPCPRNGP--------NFRPKVLQMGGKKQFPYMV 195 (289)
Q Consensus 138 ~~~itLY~~~~cP~CrkVr~aL~-------e--~gI~ye~~~V~~~~~--------~~~~e~~~inp~~tVP~Lv 195 (289)
...+..|+.++|++|++....+. . .++.+..+++..... ....++....+-..+|+++
T Consensus 15 k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~ 89 (125)
T cd02951 15 KPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTVI 89 (125)
T ss_pred CcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEEE
Confidence 44577888899999998764331 1 233333333322110 0124566666777899973
No 141
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=85.62 E-value=2.8 Score=32.42 Aligned_cols=56 Identities=16% Similarity=0.153 Sum_probs=34.2
Q ss_pred CCeEEEEcCCCccHHHHHHHH------HH--c-CCCeEEEEcCCCCCCChhHHHhhCCCCcccEEE
Q 022996 139 KPIEIYEYESCPFCRKVREIV------AV--L-DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (289)
Q Consensus 139 ~~itLY~~~~cP~CrkVr~aL------~e--~-gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lv 195 (289)
.-+..|+.++|++|++....+ .. . ++.+-.+++..+ .....++.+..+-..+|+++
T Consensus 13 ~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~~~~~i~~~Pti~ 77 (104)
T cd02953 13 PVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKN-DPEITALLKRFGVFGPPTYL 77 (104)
T ss_pred eEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCC-CHHHHHHHHHcCCCCCCEEE
Confidence 346778889999999876433 11 2 333333343222 11135677777888999984
No 142
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=85.14 E-value=1 Score=34.06 Aligned_cols=60 Identities=13% Similarity=0.115 Sum_probs=38.3
Q ss_pred CCeEEEEcCCCccHHHHHHHHHHc----CCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCc
Q 022996 139 KPIEIYEYESCPFCRKVREIVAVL----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGV 201 (289)
Q Consensus 139 ~~itLY~~~~cP~CrkVr~aL~e~----gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~ 201 (289)
.-+..|+.++|+.|++....|.+. ...+....++.. ..+++.+..+-..+|+++.=++|.
T Consensus 16 ~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~---~~~~~~~~~~i~~~Pt~~~~~~g~ 79 (97)
T cd02984 16 LLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAE---ELPEISEKFEITAVPTFVFFRNGT 79 (97)
T ss_pred EEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccc---cCHHHHHhcCCccccEEEEEECCE
Confidence 346677889999999998777652 334555555321 235676666778899884322554
No 143
>PTZ00051 thioredoxin; Provisional
Probab=85.11 E-value=0.86 Score=34.65 Aligned_cols=58 Identities=12% Similarity=0.102 Sum_probs=36.9
Q ss_pred CCeEEEEcCCCccHHHHHHHHHHc-----CCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCc
Q 022996 139 KPIEIYEYESCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGV 201 (289)
Q Consensus 139 ~~itLY~~~~cP~CrkVr~aL~e~-----gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~ 201 (289)
.-+..|+.++|+.|++....+... ++.+-.+++. ...++.+..+-..+|+++.-.+|.
T Consensus 20 ~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~-----~~~~~~~~~~v~~~Pt~~~~~~g~ 82 (98)
T PTZ00051 20 LVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVD-----ELSEVAEKENITSMPTFKVFKNGS 82 (98)
T ss_pred eEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECc-----chHHHHHHCCCceeeEEEEEeCCe
Confidence 446677889999999887766552 3333333332 125677777778999984322554
No 144
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=84.77 E-value=1.7 Score=40.23 Aligned_cols=33 Identities=9% Similarity=0.378 Sum_probs=24.0
Q ss_pred CCeEEEEcCCCccHHHHHHHHHH---cC-CCeEEEEc
Q 022996 139 KPIEIYEYESCPFCRKVREIVAV---LD-LDVLYYPC 171 (289)
Q Consensus 139 ~~itLY~~~~cP~CrkVr~aL~e---~g-I~ye~~~V 171 (289)
..|.+|+.+.||||++....+.. .| +.+..+++
T Consensus 119 ~~I~vFtDp~CpyC~kl~~~l~~~~~~g~V~v~~ip~ 155 (251)
T PRK11657 119 RIVYVFADPNCPYCKQFWQQARPWVDSGKVQLRHILV 155 (251)
T ss_pred eEEEEEECCCChhHHHHHHHHHHHhhcCceEEEEEec
Confidence 45888999999999999777653 23 55555554
No 145
>PRK09381 trxA thioredoxin; Provisional
Probab=84.75 E-value=7.5 Score=30.18 Aligned_cols=61 Identities=13% Similarity=0.123 Sum_probs=35.3
Q ss_pred CCeEEEEcCCCccHHHHHHHHHH----cCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCcc
Q 022996 139 KPIEIYEYESCPFCRKVREIVAV----LDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVS 202 (289)
Q Consensus 139 ~~itLY~~~~cP~CrkVr~aL~e----~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~ 202 (289)
.-+..|+.++||.|+...-.+.. .+-.+....++... .+.+.+..+-..+|+++.-++|..
T Consensus 23 ~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~Pt~~~~~~G~~ 87 (109)
T PRK09381 23 AILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ---NPGTAPKYGIRGIPTLLLFKNGEV 87 (109)
T ss_pred eEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCC---ChhHHHhCCCCcCCEEEEEeCCeE
Confidence 34667777899999988655543 22223333333221 245556667788999843225653
No 146
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=84.49 E-value=0.26 Score=36.24 Aligned_cols=28 Identities=29% Similarity=0.489 Sum_probs=24.9
Q ss_pred HHHHhhhChHHHHHHHHhhhCCCCceec
Q 022996 261 EVWAYEGSPFCKVVREVLVELELPHLQR 288 (289)
Q Consensus 261 ~~~~~e~spF~~~vre~L~elelp~~~~ 288 (289)
.+|.+..+|||+.++..|.+..+||-.+
T Consensus 3 ~Ly~~~~~p~c~kv~~~L~~~gi~y~~~ 30 (77)
T cd03040 3 TLYQYKTCPFCCKVRAFLDYHGIPYEVV 30 (77)
T ss_pred EEEEcCCCHHHHHHHHHHHHCCCceEEE
Confidence 4677889999999999999999999765
No 147
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=83.60 E-value=2.2 Score=32.15 Aligned_cols=55 Identities=13% Similarity=0.197 Sum_probs=33.6
Q ss_pred CCCCeEEEEcCCCccHHHHHHHHHHcCC------CeEEEEcCCCCCCChhHHHhhCCCCcccEE
Q 022996 137 PEKPIEIYEYESCPFCRKVREIVAVLDL------DVLYYPCPRNGPNFRPKVLQMGGKKQFPYM 194 (289)
Q Consensus 137 ~~~~itLY~~~~cP~CrkVr~aL~e~gI------~ye~~~V~~~~~~~~~e~~~inp~~tVP~L 194 (289)
....+.+|+.++|+.|++....+....- .+....++.. ...++.+..+-..+|.+
T Consensus 13 ~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~~i~~~P~~ 73 (102)
T TIGR01126 13 NKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDAT---AEKDLASRFGVSGFPTI 73 (102)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEcc---chHHHHHhCCCCcCCEE
Confidence 3445888999999999986554433211 1223322211 13567666777889988
No 148
>PTZ00062 glutaredoxin; Provisional
Probab=83.33 E-value=14 Score=33.49 Aligned_cols=118 Identities=12% Similarity=0.124 Sum_probs=67.3
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCC---eEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccc-----cChHHHHHH
Q 022996 141 IEIYEYESCPFCRKVREIVAVLDLD---VLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM-----YESDNIIKY 212 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~gI~---ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I-----~ES~aIi~Y 212 (289)
+..|+-+|||.|+.+...|.++--+ +....|..+ ..-..||.++.=.+|..| .+...+..+
T Consensus 21 vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d-----------~~V~~vPtfv~~~~g~~i~r~~G~~~~~~~~~ 89 (204)
T PTZ00062 21 VLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA-----------DANNEYGVFEFYQNSQLINSLEGCNTSTLVSF 89 (204)
T ss_pred EEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc-----------cCcccceEEEEEECCEEEeeeeCCCHHHHHHH
Confidence 4444578999999888777665433 444444321 455679987431255432 246778888
Q ss_pred HHhhcCCCCCCcccchhhhhhHHhHHHHHhhcCCCcccCCC--CCCCCCHHHHHhhhChHHHHHHHHhhhCCCCceec
Q 022996 213 LVGKYGDGSVPFMLSLGLLTTLTEGFAMIGRLGKGQSYTPA--KLPPKPLEVWAYEGSPFCKVVREVLVELELPHLQR 288 (289)
Q Consensus 213 L~~~y~~~~~P~~l~~~~~~~~~~~~a~i~R~~~g~~~~~~--r~pe~~l~~~~~e~spF~~~vre~L~elelp~~~~ 288 (289)
+.+.++.... . .+......+.....-+.+-.. -.| ..|||+.+.+.|.++.++|..+
T Consensus 90 ~~~~~~~~~~--~-------~~~~~v~~li~~~~Vvvf~Kg~~~~p----------~C~~C~~~k~~L~~~~i~y~~~ 148 (204)
T PTZ00062 90 IRGWAQKGSS--E-------DTVEKIERLIRNHKILLFMKGSKTFP----------FCRFSNAVVNMLNSSGVKYETY 148 (204)
T ss_pred HHHHcCCCCH--H-------HHHHHHHHHHhcCCEEEEEccCCCCC----------CChhHHHHHHHHHHcCCCEEEE
Confidence 8776653221 0 122222222222211222111 113 6899999999999999999764
No 149
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=83.04 E-value=5.4 Score=31.07 Aligned_cols=51 Identities=10% Similarity=0.185 Sum_probs=33.3
Q ss_pred CeEEEEcCCCccHHHHHHHHHHc------------CCCeEEEEcCCCCCCChhHHHhhCCCCcccEEE
Q 022996 140 PIEIYEYESCPFCRKVREIVAVL------------DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (289)
Q Consensus 140 ~itLY~~~~cP~CrkVr~aL~e~------------gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lv 195 (289)
-+..|+.++|++|++....+.+. .+.+-.+++.. .+++.+..+-..+|.++
T Consensus 21 vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~-----~~~l~~~~~v~~~Ptl~ 83 (108)
T cd02996 21 VLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK-----ESDIADRYRINKYPTLK 83 (108)
T ss_pred EEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC-----CHHHHHhCCCCcCCEEE
Confidence 46777889999999887666421 12333333322 25677777888999995
No 150
>PRK10996 thioredoxin 2; Provisional
Probab=82.59 E-value=8.6 Score=31.97 Aligned_cols=76 Identities=11% Similarity=0.039 Sum_probs=45.2
Q ss_pred CCCCeEEEEcCCCccHHHHHHHHHH----cCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccc------cCh
Q 022996 137 PEKPIEIYEYESCPFCRKVREIVAV----LDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM------YES 206 (289)
Q Consensus 137 ~~~~itLY~~~~cP~CrkVr~aL~e----~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I------~ES 206 (289)
....+..|+-++|+.|+...-.+.+ .+-.+....++.+ ..+++.+..+-..+|.++.-++|..+ ...
T Consensus 52 ~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~---~~~~l~~~~~V~~~Ptlii~~~G~~v~~~~G~~~~ 128 (139)
T PRK10996 52 DLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTE---AERELSARFRIRSIPTIMIFKNGQVVDMLNGAVPK 128 (139)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCC---CCHHHHHhcCCCccCEEEEEECCEEEEEEcCCCCH
Confidence 3445777788999999986544433 2323444444322 13577777788899999432256432 224
Q ss_pred HHHHHHHHh
Q 022996 207 DNIIKYLVG 215 (289)
Q Consensus 207 ~aIi~YL~~ 215 (289)
..|..||.+
T Consensus 129 e~l~~~l~~ 137 (139)
T PRK10996 129 APFDSWLNE 137 (139)
T ss_pred HHHHHHHHH
Confidence 556666654
No 151
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=82.04 E-value=7.5 Score=30.55 Aligned_cols=57 Identities=18% Similarity=0.312 Sum_probs=33.0
Q ss_pred CCCCeEEEEcCCCccHHHHHHHHHHc-----CCCeEEEEcCCCCCCChhHHH-hhCCCCcccEEE
Q 022996 137 PEKPIEIYEYESCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVL-QMGGKKQFPYMV 195 (289)
Q Consensus 137 ~~~~itLY~~~~cP~CrkVr~aL~e~-----gI~ye~~~V~~~~~~~~~e~~-~inp~~tVP~Lv 195 (289)
...-+..|+.++||+|++..-.+.+. +..+....|..+.. ...+. +..+-..+|.++
T Consensus 21 ~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~--~~~~~~~~~~v~~~Pti~ 83 (109)
T cd02993 21 NQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE--QREFAKEELQLKSFPTIL 83 (109)
T ss_pred CCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc--chhhHHhhcCCCcCCEEE
Confidence 34567888899999999776555332 22233333322111 12333 346778899884
No 152
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=81.66 E-value=4.9 Score=35.84 Aligned_cols=77 Identities=13% Similarity=0.229 Sum_probs=48.2
Q ss_pred CCCeEEEEc---CCCccHHHHHHHHHHcC-----CCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccc----cC
Q 022996 138 EKPIEIYEY---ESCPFCRKVREIVAVLD-----LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM----YE 205 (289)
Q Consensus 138 ~~~itLY~~---~~cP~CrkVr~aL~e~g-----I~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I----~E 205 (289)
...+.+|.. +|||+|+.+.-.+++.. +.+..+.++.. ..+++.+..+-..+|+++.=++|..+ .+
T Consensus 20 ~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~---~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G 96 (215)
T TIGR02187 20 PVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTP---EDKEEAEKYGVERVPTTIILEEGKDGGIRYTG 96 (215)
T ss_pred CeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCc---ccHHHHHHcCCCccCEEEEEeCCeeeEEEEee
Confidence 345778887 89999998888776652 23334444321 23678888889999999541144322 12
Q ss_pred ---hHHHHHHHHhhc
Q 022996 206 ---SDNIIKYLVGKY 217 (289)
Q Consensus 206 ---S~aIi~YL~~~y 217 (289)
-..+..+|...+
T Consensus 97 ~~~~~~l~~~i~~~~ 111 (215)
T TIGR02187 97 IPAGYEFAALIEDIV 111 (215)
T ss_pred cCCHHHHHHHHHHHH
Confidence 345666766654
No 153
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=81.30 E-value=3.3 Score=32.84 Aligned_cols=69 Identities=17% Similarity=0.359 Sum_probs=41.9
Q ss_pred EEEcCCCccHHHHHHHHHHcCC--CeEEEEcCCCCCCChhHHH---hhCCC--CcccEEEECCCCc-cccChHHHHHHHH
Q 022996 143 IYEYESCPFCRKVREIVAVLDL--DVLYYPCPRNGPNFRPKVL---QMGGK--KQFPYMVDPNTGV-SMYESDNIIKYLV 214 (289)
Q Consensus 143 LY~~~~cP~CrkVr~aL~e~gI--~ye~~~V~~~~~~~~~e~~---~inp~--~tVP~Lvd~n~G~-~I~ES~aIi~YL~ 214 (289)
||+...||+|.+....++..+. .++.+++... + ..++. .+++. .+.-.+++ +|. +..+++|++.-+.
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~-~--~~~~~~~~~~~~~~~~~~l~~~~--~g~~~~~G~~A~~~l~~ 75 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSE-P--DQALLASYGISPEDADSRLHLID--DGERVYRGSDAVLRLLR 75 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCCh-h--hhhHHHhcCcCHHHHcCeeEEec--CCCEEEEcHHHHHHHHH
Confidence 4677889999999999999876 4666665211 1 11222 12211 12333333 565 9999999988765
Q ss_pred hh
Q 022996 215 GK 216 (289)
Q Consensus 215 ~~ 216 (289)
..
T Consensus 76 ~~ 77 (114)
T PF04134_consen 76 RL 77 (114)
T ss_pred Hc
Confidence 43
No 154
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.98 E-value=15 Score=35.44 Aligned_cols=59 Identities=10% Similarity=0.116 Sum_probs=45.5
Q ss_pred CCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHHhh
Q 022996 148 SCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGK 216 (289)
Q Consensus 148 ~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~~~ 216 (289)
.|+-|-.|.++++..+-+.++..... .. .++.|++|+|++. +|..+..-..|+.||.+.
T Consensus 16 id~~sL~~l~y~kl~~~~l~v~~ssN-~~--------~s~sg~LP~l~~~-ng~~va~~~~iv~~L~k~ 74 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGAPLKVVVSSN-PW--------RSPSGKLPYLITD-NGTKVAGPVKIVQFLKKN 74 (313)
T ss_pred cChhHHHHHHHHHHhCCCceeEeecC-CC--------CCCCCCCCeEEec-CCceeccHHHHHHHHHHh
Confidence 48999999999999995554444321 11 3578899999874 678999999999999874
No 155
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=80.23 E-value=9.9 Score=30.14 Aligned_cols=59 Identities=12% Similarity=0.165 Sum_probs=34.9
Q ss_pred CCCeEEEEcCCCccHHHHHHHH----HHc---CCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCc
Q 022996 138 EKPIEIYEYESCPFCRKVREIV----AVL---DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGV 201 (289)
Q Consensus 138 ~~~itLY~~~~cP~CrkVr~aL----~e~---gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~ 201 (289)
..-+..|+.++|+.|+...-.+ ++. ++.+-.+++.. .+++.+..+-..+|.++.=++|.
T Consensus 25 ~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~-----~~~l~~~~~V~~~Pt~~i~~~g~ 90 (111)
T cd02963 25 KPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH-----ERRLARKLGAHSVPAIVGIINGQ 90 (111)
T ss_pred CeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc-----cHHHHHHcCCccCCEEEEEECCE
Confidence 3456778889999998665333 222 34444444322 24566667778999985312553
No 156
>PRK10638 glutaredoxin 3; Provisional
Probab=80.11 E-value=0.51 Score=35.66 Aligned_cols=30 Identities=17% Similarity=0.417 Sum_probs=26.3
Q ss_pred HHHHHhhhChHHHHHHHHhhhCCCCceecC
Q 022996 260 LEVWAYEGSPFCKVVREVLVELELPHLQRR 289 (289)
Q Consensus 260 l~~~~~e~spF~~~vre~L~elelp~~~~~ 289 (289)
+.+|+...+|||+.+++.|.+..+||..+|
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~d 33 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSKGVSFQEIP 33 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCCcEEEE
Confidence 456788899999999999999999998764
No 157
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=79.26 E-value=5.8 Score=32.17 Aligned_cols=62 Identities=13% Similarity=0.182 Sum_probs=34.4
Q ss_pred CCeEEEEcCCCccHHHHHHHHHH------cCCCeEEEEcCCCCCCChhHHHhhCCCC-cccEEEE-CCCCccc
Q 022996 139 KPIEIYEYESCPFCRKVREIVAV------LDLDVLYYPCPRNGPNFRPKVLQMGGKK-QFPYMVD-PNTGVSM 203 (289)
Q Consensus 139 ~~itLY~~~~cP~CrkVr~aL~e------~gI~ye~~~V~~~~~~~~~e~~~inp~~-tVP~Lvd-~n~G~~I 203 (289)
.-+..|+-.+|++|++..-.+.. .+..|..+.+..... +...+.+..+ .+|.++. ..+|..+
T Consensus 21 pVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~---~~~~~~~~~g~~vPt~~f~~~~Gk~~ 90 (117)
T cd02959 21 PLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEE---PKDEEFSPDGGYIPRILFLDPSGDVH 90 (117)
T ss_pred cEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCC---chhhhcccCCCccceEEEECCCCCCc
Confidence 34566778999999988666555 233565555543221 1112333333 4999843 1155543
No 158
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=79.22 E-value=2 Score=34.58 Aligned_cols=63 Identities=11% Similarity=0.181 Sum_probs=40.0
Q ss_pred CCCCeEEEEcCCCccHHHHHHHHHHc-----CCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCcccc
Q 022996 137 PEKPIEIYEYESCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMY 204 (289)
Q Consensus 137 ~~~~itLY~~~~cP~CrkVr~aL~e~-----gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ 204 (289)
...-+..|+.++|+.|+.+.-.|.+. ++.+-.+++.. .+++.+..+-..+|+++.=.+|..+.
T Consensus 22 ~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~-----~~~l~~~~~v~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 22 SERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEK-----APFLVEKLNIKVLPTVILFKNGKTVD 89 (113)
T ss_pred CCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEccc-----CHHHHHHCCCccCCEEEEEECCEEEE
Confidence 34456677779999999888777552 34333333322 35677878888999994322665443
No 159
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=78.50 E-value=2.4 Score=31.27 Aligned_cols=54 Identities=13% Similarity=0.163 Sum_probs=36.1
Q ss_pred CCeEEEEcCCCccHHHHHHHHHH----c--CCCeEEEEcCCCCCCChhHHHhhCCCCcccEEE
Q 022996 139 KPIEIYEYESCPFCRKVREIVAV----L--DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (289)
Q Consensus 139 ~~itLY~~~~cP~CrkVr~aL~e----~--gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lv 195 (289)
..+.+|+.++|++|++....+.+ . +-.+....+... ...++.+..+-..+|+++
T Consensus 17 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~~~i~~~Pt~~ 76 (101)
T cd02961 17 DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCT---ANNDLCSEYGVRGYPTIK 76 (101)
T ss_pred cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeecc---chHHHHHhCCCCCCCEEE
Confidence 56788888999999988776644 2 223444444321 135677777778999984
No 160
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=78.02 E-value=2 Score=33.38 Aligned_cols=23 Identities=17% Similarity=0.616 Sum_probs=16.6
Q ss_pred CCCeEEEEcCCCccHHHHHHHHH
Q 022996 138 EKPIEIYEYESCPFCRKVREIVA 160 (289)
Q Consensus 138 ~~~itLY~~~~cP~CrkVr~aL~ 160 (289)
...+.+|+.++||||++....+.
T Consensus 6 k~~v~~F~~~~C~~C~~~~~~~~ 28 (112)
T PF13098_consen 6 KPIVVVFTDPWCPYCKKLEKELF 28 (112)
T ss_dssp SEEEEEEE-TT-HHHHHHHHHHH
T ss_pred CEEEEEEECCCCHHHHHHHHHHH
Confidence 34577888999999999877665
No 161
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=77.58 E-value=1.5 Score=36.78 Aligned_cols=30 Identities=23% Similarity=0.643 Sum_probs=15.3
Q ss_pred cccEEEECCCCccccChHHHHHHHHhhcCC
Q 022996 190 QFPYMVDPNTGVSMYESDNIIKYLVGKYGD 219 (289)
Q Consensus 190 tVP~Lvd~n~G~~I~ES~aIi~YL~~~y~~ 219 (289)
.-|.|.+..+|+.++|+.||++||.+-|..
T Consensus 35 ~~~~L~~~~~gF~L~e~NAIvrYl~nDF~~ 64 (122)
T PF09635_consen 35 SGPLLKDKKSGFELFEPNAIVRYLANDFEG 64 (122)
T ss_dssp -S--EEE-S--S----HHHHHHHHTT--TT
T ss_pred ccceeeecCCceEEecccHHHHHHHhhcCC
Confidence 457887766899999999999999988854
No 162
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=77.30 E-value=0.66 Score=34.03 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=25.6
Q ss_pred HHHHhhhChHHHHHHHHhhhCCCCceecC
Q 022996 261 EVWAYEGSPFCKVVREVLVELELPHLQRR 289 (289)
Q Consensus 261 ~~~~~e~spF~~~vre~L~elelp~~~~~ 289 (289)
.+|.....|+|+.+++.|.++.+||..+|
T Consensus 4 ~ly~~~~C~~C~ka~~~L~~~gi~~~~~d 32 (73)
T cd03027 4 TIYSRLGCEDCTAVRLFLREKGLPYVEIN 32 (73)
T ss_pred EEEecCCChhHHHHHHHHHHCCCceEEEE
Confidence 46777899999999999999999998764
No 163
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=76.62 E-value=3.1 Score=30.49 Aligned_cols=32 Identities=28% Similarity=0.580 Sum_probs=24.1
Q ss_pred eEEEEcCCCccHHHHHHHHHHc------CCCeEEEEcC
Q 022996 141 IEIYEYESCPFCRKVREIVAVL------DLDVLYYPCP 172 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~------gI~ye~~~V~ 172 (289)
|.+|....||+|+.....+... ++.++.+.+.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~ 38 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFP 38 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccc
Confidence 4689999999999988777663 4556666664
No 164
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=75.96 E-value=12 Score=28.20 Aligned_cols=62 Identities=15% Similarity=0.170 Sum_probs=34.9
Q ss_pred CCeEEEEcCCCccHHHHHHHHH----HcC--CCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCc
Q 022996 139 KPIEIYEYESCPFCRKVREIVA----VLD--LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGV 201 (289)
Q Consensus 139 ~~itLY~~~~cP~CrkVr~aL~----e~g--I~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~ 201 (289)
..+.+|+-++|++|++..-.+. ... -.+....++.... ..+++.+..+-..+|.++.-++|.
T Consensus 19 ~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~i~~~Pt~~~~~~g~ 86 (104)
T cd02997 19 HVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKP-EHDALKEEYNVKGFPTFKYFENGK 86 (104)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCC-ccHHHHHhCCCccccEEEEEeCCC
Confidence 4577888899999998753332 211 2233333322111 135666666777899885322454
No 165
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=75.56 E-value=1.5 Score=31.68 Aligned_cols=28 Identities=29% Similarity=0.506 Sum_probs=24.6
Q ss_pred HHHHhhhChHHHHHHHHhhhCCCCceec
Q 022996 261 EVWAYEGSPFCKVVREVLVELELPHLQR 288 (289)
Q Consensus 261 ~~~~~e~spF~~~vre~L~elelp~~~~ 288 (289)
.+|.+..+|||..||..|.+..+||-.+
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~gl~~~~~ 29 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLKNIPVEQI 29 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHcCCCeEEE
Confidence 3678889999999999999999999653
No 166
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=74.33 E-value=4.7 Score=31.27 Aligned_cols=55 Identities=13% Similarity=0.085 Sum_probs=32.7
Q ss_pred CCeEEEEcCCCccHHHHHHHHHH----c---CCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEE
Q 022996 139 KPIEIYEYESCPFCRKVREIVAV----L---DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVD 196 (289)
Q Consensus 139 ~~itLY~~~~cP~CrkVr~aL~e----~---gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd 196 (289)
.-+..|+.++||+|++..-.+.+ . +..+....++.. ..+++.+..+-..+|.++.
T Consensus 17 ~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~---~~~~~~~~~~I~~~Pt~~l 78 (104)
T cd03000 17 IWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDAT---AYSSIASEFGVRGYPTIKL 78 (104)
T ss_pred eEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECc---cCHhHHhhcCCccccEEEE
Confidence 45677788999999976544422 1 333333333221 1245666667778999943
No 167
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=74.15 E-value=12 Score=29.11 Aligned_cols=60 Identities=12% Similarity=0.057 Sum_probs=35.2
Q ss_pred CeEEEEcCCCccHHHHHHHHHHc-----CCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCc
Q 022996 140 PIEIYEYESCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGV 201 (289)
Q Consensus 140 ~itLY~~~~cP~CrkVr~aL~e~-----gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~ 201 (289)
-+..|+-+||+.|+...-.+... ++.|-.++++.. ....++.+..+-..+|.++.-.+|.
T Consensus 18 vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~--~~~~~l~~~~~V~~~Pt~~~~~~G~ 82 (103)
T cd02985 18 VVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDEN--DSTMELCRREKIIEVPHFLFYKDGE 82 (103)
T ss_pred EEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCC--hHHHHHHHHcCCCcCCEEEEEeCCe
Confidence 45666778999999876666542 333333333221 1124677777777899884312554
No 168
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=73.74 E-value=1 Score=33.05 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=24.6
Q ss_pred HHHhhhChHHHHHHHHhhhCCCCceecC
Q 022996 262 VWAYEGSPFCKVVREVLVELELPHLQRR 289 (289)
Q Consensus 262 ~~~~e~spF~~~vre~L~elelp~~~~~ 289 (289)
+|...+.|+|+.+++.|.++.++|..+|
T Consensus 3 ly~~~~Cp~C~~ak~~L~~~~i~~~~~d 30 (72)
T TIGR02194 3 VYSKNNCVQCKMTKKALEEHGIAFEEIN 30 (72)
T ss_pred EEeCCCCHHHHHHHHHHHHCCCceEEEE
Confidence 4667789999999999999999998764
No 169
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=73.68 E-value=15 Score=28.00 Aligned_cols=54 Identities=13% Similarity=0.128 Sum_probs=33.3
Q ss_pred CeEEEEcCCCccHHHHHHHHHHc-----CCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEE
Q 022996 140 PIEIYEYESCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVD 196 (289)
Q Consensus 140 ~itLY~~~~cP~CrkVr~aL~e~-----gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd 196 (289)
.+..|+.++|++|+...-.+... +..+....++... .+++.+..+-..+|.++.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~---~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ---EPGLSGRFFVTALPTIYH 77 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC---CHhHHHHcCCcccCEEEE
Confidence 47788889999999876555432 2233333332211 245666667788999953
No 170
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=73.65 E-value=4.9 Score=31.30 Aligned_cols=59 Identities=14% Similarity=0.068 Sum_probs=35.0
Q ss_pred CCeEEEEcCCCccHHHHHHHHHHc----C-CCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCc
Q 022996 139 KPIEIYEYESCPFCRKVREIVAVL----D-LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGV 201 (289)
Q Consensus 139 ~~itLY~~~~cP~CrkVr~aL~e~----g-I~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~ 201 (289)
.-+..|+-++|+.|+...-.+... + -.+....++.+ .++..+...-..+|.++.=.+|.
T Consensus 19 ~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d----~~~~~~~~~v~~~Pt~~~~~~g~ 82 (102)
T cd02948 19 LTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD----TIDTLKRYRGKCEPTFLFYKNGE 82 (102)
T ss_pred eEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC----CHHHHHHcCCCcCcEEEEEECCE
Confidence 346677789999999887666432 2 11233333222 24567777788899884312554
No 171
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=73.08 E-value=19 Score=27.07 Aligned_cols=60 Identities=12% Similarity=0.111 Sum_probs=36.4
Q ss_pred CCeEEEEcCCCccHHHHHHHHHHcC----CCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCc
Q 022996 139 KPIEIYEYESCPFCRKVREIVAVLD----LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGV 201 (289)
Q Consensus 139 ~~itLY~~~~cP~CrkVr~aL~e~g----I~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~ 201 (289)
.-+..|+.++|+.|++..-.+.+.. -.+....++.. ...++.+..+-..+|+++.=++|.
T Consensus 14 ~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~---~~~~l~~~~~i~~~Pt~~~~~~g~ 77 (96)
T cd02956 14 PVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCD---AQPQIAQQFGVQALPTVYLFAAGQ 77 (96)
T ss_pred eEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEecc---CCHHHHHHcCCCCCCEEEEEeCCE
Confidence 3456667789999998876665422 12333444321 135677777778999995312554
No 172
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=72.67 E-value=1.4 Score=32.99 Aligned_cols=33 Identities=24% Similarity=0.460 Sum_probs=28.9
Q ss_pred CCCHHHHHhhhChHHHHHHHHhhhCCCCceecC
Q 022996 257 PKPLEVWAYEGSPFCKVVREVLVELELPHLQRR 289 (289)
Q Consensus 257 e~~l~~~~~e~spF~~~vre~L~elelp~~~~~ 289 (289)
+..+.+|+....|||+.+++.|.++.++|..+|
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~id 39 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEKGYDFEEIP 39 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEE
Confidence 356778889999999999999999999998754
No 173
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=72.47 E-value=12 Score=30.92 Aligned_cols=66 Identities=17% Similarity=0.369 Sum_probs=37.2
Q ss_pred eEEEEcCCCccHHHHHH-------HHHHcCCCeEEEEcCCCC-CCChhHHH----hhCCCCcccEEE-ECCCCccccCh
Q 022996 141 IEIYEYESCPFCRKVRE-------IVAVLDLDVLYYPCPRNG-PNFRPKVL----QMGGKKQFPYMV-DPNTGVSMYES 206 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~-------aL~e~gI~ye~~~V~~~~-~~~~~e~~----~inp~~tVP~Lv-d~n~G~~I~ES 206 (289)
+..|+..+|++|++... .....+-.|..+.++.+. +.....+. ++++...+|.++ ...+|..++.+
T Consensus 19 ll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 19 FLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred EEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEeee
Confidence 44467789999998743 222233357766664321 11111121 245777899984 33377777765
No 174
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=71.14 E-value=1.2 Score=32.50 Aligned_cols=30 Identities=20% Similarity=0.419 Sum_probs=25.6
Q ss_pred HHHHHhhhChHHHHHHHHhhhCCCCceecC
Q 022996 260 LEVWAYEGSPFCKVVREVLVELELPHLQRR 289 (289)
Q Consensus 260 l~~~~~e~spF~~~vre~L~elelp~~~~~ 289 (289)
+.+|+..+.|||..+++.|.++.++|..+|
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~ 32 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQENGISYEEIP 32 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEEE
Confidence 456777899999999999999999997653
No 175
>PHA02278 thioredoxin-like protein
Probab=70.43 E-value=18 Score=28.83 Aligned_cols=64 Identities=14% Similarity=0.268 Sum_probs=38.3
Q ss_pred CCCeEEEEcCCCccHHHHHHHHHHc----C--CCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCcc
Q 022996 138 EKPIEIYEYESCPFCRKVREIVAVL----D--LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVS 202 (289)
Q Consensus 138 ~~~itLY~~~~cP~CrkVr~aL~e~----g--I~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~ 202 (289)
..-+.-|+-++|++|+...-.+.+. + +.+..++++.... ..+++.+...-..+|+++.=.+|..
T Consensus 15 ~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~-d~~~l~~~~~I~~iPT~i~fk~G~~ 84 (103)
T PHA02278 15 KDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDV-DREKAVKLFDIMSTPVLIGYKDGQL 84 (103)
T ss_pred CcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCcccc-ccHHHHHHCCCccccEEEEEECCEE
Confidence 3445666779999999877555442 2 3354455543211 1356777778889999943225653
No 176
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=69.81 E-value=14 Score=28.38 Aligned_cols=53 Identities=17% Similarity=0.298 Sum_probs=32.4
Q ss_pred CeEEEEcCCCccHHHHHHHHHHc----C--CCeEEEEcCCCCCCChhHHHhhCCCCcccEEE
Q 022996 140 PIEIYEYESCPFCRKVREIVAVL----D--LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (289)
Q Consensus 140 ~itLY~~~~cP~CrkVr~aL~e~----g--I~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lv 195 (289)
.+..|+.++|++|+...-.+.+. + +.+-.+++..+ ...++.+..+-..+|.++
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~---~~~~~~~~~~i~~~Pt~~ 79 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDED---KNKPLCGKYGVQGFPTLK 79 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCcc---ccHHHHHHcCCCcCCEEE
Confidence 57778889999999775444332 2 22333333221 124566667778899984
No 177
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=69.55 E-value=0.8 Score=33.75 Aligned_cols=27 Identities=30% Similarity=0.524 Sum_probs=23.6
Q ss_pred HHHhhhChHHHHHHHHhhhCCCCceec
Q 022996 262 VWAYEGSPFCKVVREVLVELELPHLQR 288 (289)
Q Consensus 262 ~~~~e~spF~~~vre~L~elelp~~~~ 288 (289)
||.+..||||+.|+..|.+..++|-++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~ 27 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELV 27 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEE
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEe
Confidence 356789999999999999999998764
No 178
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=69.10 E-value=11 Score=34.63 Aligned_cols=78 Identities=13% Similarity=0.152 Sum_probs=48.1
Q ss_pred CCeEEEEcCCCccHHHHHHHHHHc----CCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccc------cChHH
Q 022996 139 KPIEIYEYESCPFCRKVREIVAVL----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM------YESDN 208 (289)
Q Consensus 139 ~~itLY~~~~cP~CrkVr~aL~e~----gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I------~ES~a 208 (289)
.-+..|+-++|++|++..-.+.+. +-.+....++.. ..+++.+..+-..+|.++.=++|..+ ....+
T Consensus 54 ~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~---~~~~l~~~~~I~~~PTl~~f~~G~~v~~~~G~~s~e~ 130 (224)
T PTZ00443 54 PWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDAT---RALNLAKRFAIKGYPTLLLFDKGKMYQYEGGDRSTEK 130 (224)
T ss_pred CEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCc---ccHHHHHHcCCCcCCEEEEEECCEEEEeeCCCCCHHH
Confidence 346777889999999776554332 212333333221 13567777777899988421155432 24688
Q ss_pred HHHHHHhhcCC
Q 022996 209 IIKYLVGKYGD 219 (289)
Q Consensus 209 Ii~YL~~~y~~ 219 (289)
|.+|+.+.|..
T Consensus 131 L~~fi~~~~~~ 141 (224)
T PTZ00443 131 LAAFALGDFKK 141 (224)
T ss_pred HHHHHHHHHHh
Confidence 89999988853
No 179
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=68.62 E-value=1.6 Score=31.11 Aligned_cols=27 Identities=19% Similarity=0.162 Sum_probs=23.8
Q ss_pred HHHHhhhChHHHHHHHHhhhCCCCcee
Q 022996 261 EVWAYEGSPFCKVVREVLVELELPHLQ 287 (289)
Q Consensus 261 ~~~~~e~spF~~~vre~L~elelp~~~ 287 (289)
.+|.+..||||+.++..|.+..+||-.
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~~~~ 28 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGIDVPL 28 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCCceE
Confidence 367788899999999999999999855
No 180
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=68.17 E-value=5.8 Score=33.70 Aligned_cols=34 Identities=26% Similarity=0.570 Sum_probs=26.3
Q ss_pred CeEEEEcCCCccHHHHH----HHHHHc-CCCeEEEEcCC
Q 022996 140 PIEIYEYESCPFCRKVR----EIVAVL-DLDVLYYPCPR 173 (289)
Q Consensus 140 ~itLY~~~~cP~CrkVr----~aL~e~-gI~ye~~~V~~ 173 (289)
+|++|....||||.... .++.+. ++.++.+++..
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l 39 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPL 39 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecccc
Confidence 47899999999998554 444555 88999988853
No 181
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=67.84 E-value=1.4 Score=30.68 Aligned_cols=29 Identities=21% Similarity=0.433 Sum_probs=24.3
Q ss_pred HHHHhhhChHHHHHHHHhhhCCCCceecC
Q 022996 261 EVWAYEGSPFCKVVREVLVELELPHLQRR 289 (289)
Q Consensus 261 ~~~~~e~spF~~~vre~L~elelp~~~~~ 289 (289)
.+|.....|+|+.++..|.++.++|..+|
T Consensus 3 ~ly~~~~Cp~C~~~~~~L~~~~i~~~~~d 31 (72)
T cd02066 3 VVFSKSTCPYCKRAKRLLESLGIEFEEID 31 (72)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCcEEEEE
Confidence 35666789999999999999999997653
No 182
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=67.45 E-value=5.6 Score=32.08 Aligned_cols=36 Identities=22% Similarity=0.470 Sum_probs=25.1
Q ss_pred CCCCeEEEEcCCCccHHHHHHHHHHc-----CCCeEEEEcC
Q 022996 137 PEKPIEIYEYESCPFCRKVREIVAVL-----DLDVLYYPCP 172 (289)
Q Consensus 137 ~~~~itLY~~~~cP~CrkVr~aL~e~-----gI~ye~~~V~ 172 (289)
....|++|....||+|++....+... ++.+..+.++
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~p 45 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKEFP 45 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEeCC
Confidence 34568888999999999887666542 2455665554
No 183
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=67.21 E-value=15 Score=32.18 Aligned_cols=77 Identities=18% Similarity=0.245 Sum_probs=45.6
Q ss_pred CCeEEE-EcCCCccHH-------HHHHHHHHcCCCeEEEEcCCCCC-CChhHHHhhCCCCcccEEEECCCCccccChHHH
Q 022996 139 KPIEIY-EYESCPFCR-------KVREIVAVLDLDVLYYPCPRNGP-NFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNI 209 (289)
Q Consensus 139 ~~itLY-~~~~cP~Cr-------kVr~aL~e~gI~ye~~~V~~~~~-~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aI 209 (289)
+-+.|| +..+||.|| ++...+...+-++|++.|..+.. ..-.+|...++. +=+..| =-+++
T Consensus 34 KvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~---~W~~iP-------f~d~~ 103 (157)
T KOG2501|consen 34 KVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHG---DWLAIP-------FGDDL 103 (157)
T ss_pred cEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCC---CeEEec-------CCCHH
Confidence 445666 447999999 56778888888999999953222 112333332111 111111 11457
Q ss_pred HHHHHhhcCCCCCCcc
Q 022996 210 IKYLVGKYGDGSVPFM 225 (289)
Q Consensus 210 i~YL~~~y~~~~~P~~ 225 (289)
++-|.++|.....|..
T Consensus 104 ~~~l~~ky~v~~iP~l 119 (157)
T KOG2501|consen 104 IQKLSEKYEVKGIPAL 119 (157)
T ss_pred HHHHHHhcccCcCcee
Confidence 7778888887776643
No 184
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=67.11 E-value=4.4 Score=31.75 Aligned_cols=52 Identities=19% Similarity=0.397 Sum_probs=32.2
Q ss_pred CeEEEEcCCCccHHHHHHHHHHc-----CCCeEEEEcCCCCCCChhHHHhhCCCCcccEEE
Q 022996 140 PIEIYEYESCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (289)
Q Consensus 140 ~itLY~~~~cP~CrkVr~aL~e~-----gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lv 195 (289)
-+..|+-++|++|++..-.+.+. ++.+ ..|+... ..+++.+..+-..+|+++
T Consensus 21 vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~--~~vd~~~--~~~~l~~~~~V~~~PT~~ 77 (100)
T cd02999 21 TAVLFYASWCPFSASFRPHFNALSSMFPQIRH--LAIEESS--IKPSLLSRYGVVGFPTIL 77 (100)
T ss_pred EEEEEECCCCHHHHhHhHHHHHHHHHhccCce--EEEECCC--CCHHHHHhcCCeecCEEE
Confidence 46777889999999877555432 3333 2332210 135666667778899884
No 185
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=67.09 E-value=8.1 Score=32.33 Aligned_cols=36 Identities=17% Similarity=0.324 Sum_probs=25.2
Q ss_pred CCCCeEEEEcCCCccHHHHHHHHHHc------CCCeEEEEcC
Q 022996 137 PEKPIEIYEYESCPFCRKVREIVAVL------DLDVLYYPCP 172 (289)
Q Consensus 137 ~~~~itLY~~~~cP~CrkVr~aL~e~------gI~ye~~~V~ 172 (289)
....|..|....||+|++....+... ++.|+.+++.
T Consensus 15 ~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~~ 56 (178)
T cd03019 15 GKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPVV 56 (178)
T ss_pred CCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCCc
Confidence 34568888999999999887666432 4556666653
No 186
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=66.90 E-value=12 Score=28.72 Aligned_cols=52 Identities=12% Similarity=0.162 Sum_probs=32.8
Q ss_pred CCeEEEEcCCCccHHHHHHHHHHcC------CCeEEEEcCCCCCCChhHHHhhCCCCcccEEE
Q 022996 139 KPIEIYEYESCPFCRKVREIVAVLD------LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (289)
Q Consensus 139 ~~itLY~~~~cP~CrkVr~aL~e~g------I~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lv 195 (289)
.-+..|+.++|+.|++..-.+.+.- +.+-.+++.. .+++.+..+-..+|.++
T Consensus 21 ~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~-----~~~~~~~~~i~~~Pt~~ 78 (104)
T cd03004 21 PWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK-----YESLCQQANIRAYPTIR 78 (104)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCc-----hHHHHHHcCCCcccEEE
Confidence 4567788899999998765554321 2333333321 35666667778999984
No 187
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=66.78 E-value=5.3 Score=31.70 Aligned_cols=61 Identities=10% Similarity=0.138 Sum_probs=35.3
Q ss_pred CCeEEEEcCCCccHHHHHHHHHHcCCC---eEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccc
Q 022996 139 KPIEIYEYESCPFCRKVREIVAVLDLD---VLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM 203 (289)
Q Consensus 139 ~~itLY~~~~cP~CrkVr~aL~e~gI~---ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I 203 (289)
.-+..|+.++|+.|+...-.+...--. +.+..|+.. . . ++.+..+-..+|+++.=.+|..+
T Consensus 26 ~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~-~--~-~l~~~~~i~~~Pt~~~f~~G~~v 89 (113)
T cd02957 26 RVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAE-K--A-FLVNYLDIKVLPTLLVYKNGELI 89 (113)
T ss_pred EEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEch-h--h-HHHHhcCCCcCCEEEEEECCEEE
Confidence 345667779999999887666542211 222333221 1 1 56666677799998432256533
No 188
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=65.77 E-value=1.7 Score=36.28 Aligned_cols=58 Identities=16% Similarity=0.214 Sum_probs=29.4
Q ss_pred CCCCeEEEEcCCCccHHHHH----HHHHHc-CCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEE
Q 022996 137 PEKPIEIYEYESCPFCRKVR----EIVAVL-DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVD 196 (289)
Q Consensus 137 ~~~~itLY~~~~cP~CrkVr----~aL~e~-gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd 196 (289)
....+.++.-.|||.|++.- .+++.. +|++.++..+.+ ...-+.|+. ++...||.++.
T Consensus 41 ~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~-~el~~~~lt-~g~~~IP~~I~ 103 (129)
T PF14595_consen 41 KPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDEN-KELMDQYLT-NGGRSIPTFIF 103 (129)
T ss_dssp S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHH-HHHTTTTTT--SS--SSEEEE
T ss_pred CCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCC-hhHHHHHHh-CCCeecCEEEE
Confidence 34578888999999999653 344444 566655544221 111233444 78889999964
No 189
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=65.54 E-value=6.5 Score=32.40 Aligned_cols=60 Identities=15% Similarity=0.152 Sum_probs=37.1
Q ss_pred CeEEEEcCCCccHHHHHHHHHHcCCC----eEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCcc
Q 022996 140 PIEIYEYESCPFCRKVREIVAVLDLD----VLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVS 202 (289)
Q Consensus 140 ~itLY~~~~cP~CrkVr~aL~e~gI~----ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~ 202 (289)
.+.-|+-.||+.|+...-.|.+.--. +....|+.+ . .+++.+..+-..+|.++.=.+|..
T Consensus 17 vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD-~--~~~la~~~~V~~iPTf~~fk~G~~ 80 (114)
T cd02954 17 VVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDID-E--VPDFNKMYELYDPPTVMFFFRNKH 80 (114)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECC-C--CHHHHHHcCCCCCCEEEEEECCEE
Confidence 45557889999999887666443211 233333221 1 367888888888999943125654
No 190
>PF13728 TraF: F plasmid transfer operon protein
Probab=65.50 E-value=30 Score=31.29 Aligned_cols=111 Identities=14% Similarity=0.201 Sum_probs=61.0
Q ss_pred hhhhcccccccccCCcceeccCCCCCCcc-ccccccCCcccccccCC------C--CCCCCeEEEEcCCCccHHH----H
Q 022996 89 ALFFRFGTGVFVSGYSASFVSKDEIPPDQ-YTLEIAGFKVKETSKLG------P--RPEKPIEIYEYESCPFCRK----V 155 (289)
Q Consensus 89 ~~~~r~g~G~~~~g~~~~lv~~~~~~~~~-~a~~~~g~r~~~~s~l~------~--~~~~~itLY~~~~cP~Crk----V 155 (289)
.-++.+=...|..-|...+....++.+.. +...-++++.+....-. . ...-.+.+|....||+|.+ +
T Consensus 63 q~~~~dka~~Fa~~~~~v~l~~P~Ld~~~~~P~~~~a~~~~~~~~~~~~~~~l~~la~~~gL~~F~~~~C~~C~~~~pil 142 (215)
T PF13728_consen 63 QRFAMDKASRFADTWQRVLLQNPELDYTLRRPVSNFARQAYLRQREQKRDKALKQLAQKYGLFFFYRSDCPYCQQQAPIL 142 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHhhCeEEEEEEcCCCchhHHHHHHH
Confidence 44566777788887777666665552211 11123333333321110 0 2333577778889999985 4
Q ss_pred HHHHHHcCCCeEEEEcCCC-CCC-----ChhHHHhhCCCCcccEEE--ECCC
Q 022996 156 REIVAVLDLDVLYYPCPRN-GPN-----FRPKVLQMGGKKQFPYMV--DPNT 199 (289)
Q Consensus 156 r~aL~e~gI~ye~~~V~~~-~~~-----~~~e~~~inp~~tVP~Lv--d~n~ 199 (289)
+.+..+.|+.+..+.++-. .+. ......+..+-..+|+|+ ++++
T Consensus 143 ~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~ 194 (215)
T PF13728_consen 143 QQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNT 194 (215)
T ss_pred HHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCC
Confidence 5555667888777776411 111 123444445557999994 4544
No 191
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=64.69 E-value=35 Score=28.14 Aligned_cols=59 Identities=15% Similarity=0.138 Sum_probs=31.0
Q ss_pred CCCccHHHHHHHH----HHcC--CCeEEEEcCCCCC--CChhHHHhhCCCC-cccEEEECCCCccccC
Q 022996 147 ESCPFCRKVREIV----AVLD--LDVLYYPCPRNGP--NFRPKVLQMGGKK-QFPYMVDPNTGVSMYE 205 (289)
Q Consensus 147 ~~cP~CrkVr~aL----~e~g--I~ye~~~V~~~~~--~~~~e~~~inp~~-tVP~Lvd~n~G~~I~E 205 (289)
.|||.|+.+.-.+ .+.. +.|-.++++.... ....++.....-. .+|.++.=++|..+.|
T Consensus 38 ~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~~~l~~ 105 (119)
T cd02952 38 SWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTPQRLVE 105 (119)
T ss_pred CCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCCceecc
Confidence 7999999765444 3333 4444445432110 1124565544444 8999953224444444
No 192
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=64.59 E-value=2 Score=31.06 Aligned_cols=29 Identities=14% Similarity=0.334 Sum_probs=25.0
Q ss_pred HHHHhhhChHHHHHHHHhhhCCCCceecC
Q 022996 261 EVWAYEGSPFCKVVREVLVELELPHLQRR 289 (289)
Q Consensus 261 ~~~~~e~spF~~~vre~L~elelp~~~~~ 289 (289)
.+|+....|+|+.+++.|.++.++|..+|
T Consensus 3 ~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~ 31 (75)
T cd03418 3 EIYTKPNCPYCVRAKALLDKKGVDYEEID 31 (75)
T ss_pred EEEeCCCChHHHHHHHHHHHCCCcEEEEE
Confidence 45677889999999999999999997653
No 193
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=62.92 E-value=17 Score=31.47 Aligned_cols=75 Identities=13% Similarity=0.157 Sum_probs=49.6
Q ss_pred CCCCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCC----CCcccEEEECCCCccccC---hHHH
Q 022996 137 PEKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGG----KKQFPYMVDPNTGVSMYE---SDNI 209 (289)
Q Consensus 137 ~~~~itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp----~~tVP~Lvd~n~G~~I~E---S~aI 209 (289)
....+++|..+.|..|..--..|+.+|+.+..+.... ...+++.-+ .+.-=+.++ +|..+-+ ..||
T Consensus 24 ~~~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d-----~~alK~~~gIp~e~~SCHT~VI--~Gy~vEGHVPa~aI 96 (149)
T COG3019 24 QATEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDD-----FLALKRRLGIPYEMQSCHTAVI--NGYYVEGHVPAEAI 96 (149)
T ss_pred ceeeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCc-----HHHHHHhcCCChhhccccEEEE--cCEEEeccCCHHHH
Confidence 4457899999999999999999999998777666421 122332110 111113455 6655433 6899
Q ss_pred HHHHHhhcC
Q 022996 210 IKYLVGKYG 218 (289)
Q Consensus 210 i~YL~~~y~ 218 (289)
.+.|+++.+
T Consensus 97 ~~ll~~~pd 105 (149)
T COG3019 97 ARLLAEKPD 105 (149)
T ss_pred HHHHhCCCC
Confidence 999999883
No 194
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=62.68 E-value=6.2 Score=29.77 Aligned_cols=55 Identities=13% Similarity=0.199 Sum_probs=33.4
Q ss_pred CCeEEEEcCCCccHHHHHHHHHH----cC--CCeEEEEcCCCCCCChhHHHhhCCCCcccEEE
Q 022996 139 KPIEIYEYESCPFCRKVREIVAV----LD--LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (289)
Q Consensus 139 ~~itLY~~~~cP~CrkVr~aL~e----~g--I~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lv 195 (289)
..+..|+.++|+.|+.....+.. .. -.+....++...+ .+++.+..+-..+|.++
T Consensus 20 ~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~~~~i~~~P~~~ 80 (105)
T cd02998 20 DVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA--NKDLAKKYGVSGFPTLK 80 (105)
T ss_pred cEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc--chhhHHhCCCCCcCEEE
Confidence 45778889999999976544433 22 2244444432221 24566666677899984
No 195
>PTZ00102 disulphide isomerase; Provisional
Probab=62.38 E-value=43 Score=32.84 Aligned_cols=80 Identities=11% Similarity=0.174 Sum_probs=48.0
Q ss_pred CCCCeEEEEcCCCccHHHHHHH-------HHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEE-ECCCCcc-c---c
Q 022996 137 PEKPIEIYEYESCPFCRKVREI-------VAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV-DPNTGVS-M---Y 204 (289)
Q Consensus 137 ~~~~itLY~~~~cP~CrkVr~a-------L~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lv-d~n~G~~-I---~ 204 (289)
...-+..|+.+||++|++..-. +...+-++....++... ..++.+..+-..+|.++ ..+++.+ . .
T Consensus 49 ~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~---~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~ 125 (477)
T PTZ00102 49 NEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATE---EMELAQEFGVRGYPTIKFFNKGNPVNYSGGR 125 (477)
T ss_pred CCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCC---CHHHHHhcCCCcccEEEEEECCceEEecCCC
Confidence 3456788888999999976532 22233334444443211 24566666677899883 3323322 1 2
Q ss_pred ChHHHHHHHHhhcCC
Q 022996 205 ESDNIIKYLVGKYGD 219 (289)
Q Consensus 205 ES~aIi~YL~~~y~~ 219 (289)
....|..|+.+..+.
T Consensus 126 ~~~~l~~~l~~~~~~ 140 (477)
T PTZ00102 126 TADGIVSWIKKLTGP 140 (477)
T ss_pred CHHHHHHHHHHhhCC
Confidence 468899999887654
No 196
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=62.34 E-value=2.4 Score=31.31 Aligned_cols=28 Identities=21% Similarity=0.156 Sum_probs=24.4
Q ss_pred HHHHhhhChHHHHHHHHhhhCCCCceec
Q 022996 261 EVWAYEGSPFCKVVREVLVELELPHLQR 288 (289)
Q Consensus 261 ~~~~~e~spF~~~vre~L~elelp~~~~ 288 (289)
.+|.+..||+++.|+-.|.|+.+||-++
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl~~e~~ 29 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGLRCEEY 29 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCCCCEEE
Confidence 3677889999999999999999998654
No 197
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=62.29 E-value=12 Score=28.67 Aligned_cols=54 Identities=9% Similarity=0.106 Sum_probs=32.1
Q ss_pred CCeEEEEcCCCccHHHHHHHHHHc----CCCeEEEEcCCCCCCChhHHHhhCCCCcccEEE
Q 022996 139 KPIEIYEYESCPFCRKVREIVAVL----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (289)
Q Consensus 139 ~~itLY~~~~cP~CrkVr~aL~e~----gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lv 195 (289)
.-+..|+.++|++|+...-.+.+. +-.+....|+... .+++.+..+-..+|.++
T Consensus 20 ~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~Pt~~ 77 (101)
T cd03003 20 IWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGD---DRMLCRSQGVNSYPSLY 77 (101)
T ss_pred eEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCc---cHHHHHHcCCCccCEEE
Confidence 356778889999999776554332 1113333332211 24566666677899984
No 198
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=62.06 E-value=3.3 Score=29.61 Aligned_cols=27 Identities=19% Similarity=0.148 Sum_probs=24.0
Q ss_pred HHHhhhChHHHHHHHHhhhCCCCceec
Q 022996 262 VWAYEGSPFCKVVREVLVELELPHLQR 288 (289)
Q Consensus 262 ~~~~e~spF~~~vre~L~elelp~~~~ 288 (289)
+|....+|||+.++..|.+..+||-++
T Consensus 3 ly~~~~~~~~~~v~~~l~~~gi~~~~~ 29 (73)
T cd03059 3 LYSGPDDVYSHRVRIVLAEKGVSVEII 29 (73)
T ss_pred EEECCCChhHHHHHHHHHHcCCccEEE
Confidence 567778999999999999999999764
No 199
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=62.05 E-value=39 Score=28.15 Aligned_cols=20 Identities=15% Similarity=0.102 Sum_probs=13.9
Q ss_pred CeEEEEcCCCccHHHHHHHH
Q 022996 140 PIEIYEYESCPFCRKVREIV 159 (289)
Q Consensus 140 ~itLY~~~~cP~CrkVr~aL 159 (289)
.+..|...+||+|++..-.+
T Consensus 64 ~~l~f~a~~C~~C~~~~~~l 83 (173)
T PRK03147 64 VFLNFWGTWCKPCEKEMPYM 83 (173)
T ss_pred EEEEEECCcCHHHHHHHHHH
Confidence 45666778999999754333
No 200
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=61.48 E-value=12 Score=33.15 Aligned_cols=33 Identities=21% Similarity=0.390 Sum_probs=25.3
Q ss_pred CCeEEEEcCCCccHHHH----HHHHHHcCCCeEEEEc
Q 022996 139 KPIEIYEYESCPFCRKV----REIVAVLDLDVLYYPC 171 (289)
Q Consensus 139 ~~itLY~~~~cP~CrkV----r~aL~e~gI~ye~~~V 171 (289)
+.|.+|....||||.-. ..++...+++++.+++
T Consensus 1 ~~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~ 37 (209)
T cd03021 1 PKIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPV 37 (209)
T ss_pred CceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEee
Confidence 35889999999999855 4445567788887776
No 201
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=61.11 E-value=3.3 Score=28.17 Aligned_cols=27 Identities=33% Similarity=0.356 Sum_probs=23.5
Q ss_pred HHHhhhChHHHHHHHHhhhCCCCceec
Q 022996 262 VWAYEGSPFCKVVREVLVELELPHLQR 288 (289)
Q Consensus 262 ~~~~e~spF~~~vre~L~elelp~~~~ 288 (289)
+|.+..+|+|..++..|.+..+||-.+
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i~~~~~ 29 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGLPYELV 29 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCCCcEEE
Confidence 566778999999999999999998654
No 202
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=60.93 E-value=49 Score=34.33 Aligned_cols=75 Identities=12% Similarity=0.108 Sum_probs=41.7
Q ss_pred CeEEEEcCCCccHHHHHHHH-------HH-cCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEE-ECCCCccc-------
Q 022996 140 PIEIYEYESCPFCRKVREIV-------AV-LDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV-DPNTGVSM------- 203 (289)
Q Consensus 140 ~itLY~~~~cP~CrkVr~aL-------~e-~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lv-d~n~G~~I------- 203 (289)
-+.-|+-++|++|+...... ++ .++.+..+++..+++ ...++.+..+-..+|.++ .+.+|..+
T Consensus 477 VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~-~~~~l~~~~~v~g~Pt~~~~~~~G~~i~~~r~~G 555 (571)
T PRK00293 477 VMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNA-EDVALLKHYNVLGLPTILFFDAQGQEIPDARVTG 555 (571)
T ss_pred EEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCCh-hhHHHHHHcCCCCCCEEEEECCCCCCcccccccC
Confidence 34556779999999764321 12 333333344433222 235677777788899984 22245432
Q ss_pred -cChHHHHHHHHh
Q 022996 204 -YESDNIIKYLVG 215 (289)
Q Consensus 204 -~ES~aIi~YL~~ 215 (289)
.+..++.++|++
T Consensus 556 ~~~~~~f~~~L~~ 568 (571)
T PRK00293 556 FMDAAAFAAHLRQ 568 (571)
T ss_pred CCCHHHHHHHHHH
Confidence 234566666654
No 203
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=60.53 E-value=51 Score=31.79 Aligned_cols=76 Identities=16% Similarity=0.203 Sum_probs=46.8
Q ss_pred CCeEEEEcCCCccHHHHHHHHH-------HcC--CCeEEEEcCCCCCCChhHHHhhCCCCcccEEE-ECCCCc--c----
Q 022996 139 KPIEIYEYESCPFCRKVREIVA-------VLD--LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV-DPNTGV--S---- 202 (289)
Q Consensus 139 ~~itLY~~~~cP~CrkVr~aL~-------e~g--I~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lv-d~n~G~--~---- 202 (289)
..+.+|+.+||++|++..-.+. ..+ +.+-.+++.. ..++.+..+-..+|+++ ..+++. .
T Consensus 20 ~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-----~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g 94 (462)
T TIGR01130 20 FVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATE-----EKDLAQKYGVSGYPTLKIFRNGEDSVSDYNG 94 (462)
T ss_pred CEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCC-----cHHHHHhCCCccccEEEEEeCCccceeEecC
Confidence 4577888899999998753332 223 3334444322 24666666777899883 332332 1
Q ss_pred ccChHHHHHHHHhhcCC
Q 022996 203 MYESDNIIKYLVGKYGD 219 (289)
Q Consensus 203 I~ES~aIi~YL~~~y~~ 219 (289)
..+...|..|+.+..+.
T Consensus 95 ~~~~~~l~~~i~~~~~~ 111 (462)
T TIGR01130 95 PRDADGIVKYMKKQSGP 111 (462)
T ss_pred CCCHHHHHHHHHHhcCC
Confidence 23578899999887654
No 204
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=60.43 E-value=11 Score=32.08 Aligned_cols=31 Identities=29% Similarity=0.371 Sum_probs=22.9
Q ss_pred eEEEEcCCCccHHHHHH----HHHHcCCCeEEEEc
Q 022996 141 IEIYEYESCPFCRKVRE----IVAVLDLDVLYYPC 171 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~----aL~e~gI~ye~~~V 171 (289)
|++|....||||.-... +..+.++.++.+++
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~ 35 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYRPI 35 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeee
Confidence 57899999999996543 44455777777776
No 205
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=59.83 E-value=43 Score=31.36 Aligned_cols=106 Identities=9% Similarity=0.120 Sum_probs=53.5
Q ss_pred hhhcccccccccCCcceeccCCCCCCc-cccccccCCcccccc-------cCCC-CCCCCeEEEEcCCCccHHHHHHHHH
Q 022996 90 LFFRFGTGVFVSGYSASFVSKDEIPPD-QYTLEIAGFKVKETS-------KLGP-RPEKPIEIYEYESCPFCRKVREIVA 160 (289)
Q Consensus 90 ~~~r~g~G~~~~g~~~~lv~~~~~~~~-~~a~~~~g~r~~~~s-------~l~~-~~~~~itLY~~~~cP~CrkVr~aL~ 160 (289)
-++.+=.+.|..-|...+....++... ++...-+++..+... .+.. .....+..|...+||+|++..-.|.
T Consensus 110 ~~~~~ka~~Fa~~~~~~~~~~P~Ldy~~~~P~~~~a~~~~~~~~~~~~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~ 189 (271)
T TIGR02740 110 RIMLDKASRFADVSQRVIWTDPILDETLRRPVSTLALDAHDTTAKKQKDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQ 189 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCccHHHHhHHHH
Confidence 345566677877777666555566322 222233333333220 0000 1223455566689999997755443
Q ss_pred ----HcCCCeEEEEcCCCCCC------ChhHHHhhCCCCcccEEE
Q 022996 161 ----VLDLDVLYYPCPRNGPN------FRPKVLQMGGKKQFPYMV 195 (289)
Q Consensus 161 ----e~gI~ye~~~V~~~~~~------~~~e~~~inp~~tVP~Lv 195 (289)
+.|+.+..+.++.+... ......+..+-..+|.++
T Consensus 190 ~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~ 234 (271)
T TIGR02740 190 AFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVF 234 (271)
T ss_pred HHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEE
Confidence 34555544554321100 012344555667899983
No 206
>PRK10329 glutaredoxin-like protein; Provisional
Probab=59.60 E-value=2.7 Score=32.09 Aligned_cols=29 Identities=3% Similarity=0.133 Sum_probs=25.0
Q ss_pred HHHHhhhChHHHHHHHHhhhCCCCceecC
Q 022996 261 EVWAYEGSPFCKVVREVLVELELPHLQRR 289 (289)
Q Consensus 261 ~~~~~e~spF~~~vre~L~elelp~~~~~ 289 (289)
.+|.....|||+.+++.|.+..++|..+|
T Consensus 4 ~lYt~~~Cp~C~~ak~~L~~~gI~~~~id 32 (81)
T PRK10329 4 TIYTRNDCVQCHATKRAMESRGFDFEMIN 32 (81)
T ss_pred EEEeCCCCHhHHHHHHHHHHCCCceEEEE
Confidence 45677789999999999999999997654
No 207
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=59.29 E-value=34 Score=25.73 Aligned_cols=53 Identities=15% Similarity=0.130 Sum_probs=30.7
Q ss_pred CeEEEEcCCCccHHHHHHHHHH----cCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEE
Q 022996 140 PIEIYEYESCPFCRKVREIVAV----LDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (289)
Q Consensus 140 ~itLY~~~~cP~CrkVr~aL~e----~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lv 195 (289)
-+.+|+.++|+.|+...-.+.+ ..-.+....++.+ ..+++.+..+-..+|+++
T Consensus 21 vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~---~~~~~~~~~~i~~~P~~~ 77 (103)
T cd03001 21 WLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDAD---VHQSLAQQYGVRGFPTIK 77 (103)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECc---chHHHHHHCCCCccCEEE
Confidence 4667778999999987654433 1112333333221 124565555667899884
No 208
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=58.96 E-value=35 Score=35.09 Aligned_cols=79 Identities=15% Similarity=0.145 Sum_probs=52.9
Q ss_pred CeEEEEcCCCccHHH-------HHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEE-ECCCCc-----cccCh
Q 022996 140 PIEIYEYESCPFCRK-------VREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV-DPNTGV-----SMYES 206 (289)
Q Consensus 140 ~itLY~~~~cP~Crk-------Vr~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lv-d~n~G~-----~I~ES 206 (289)
.+.-|+-+||..|.+ +-..|.+.|-++....|+.. ...++.....-..+|.|. -.||.. -..+.
T Consensus 45 vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat---~~~~~~~~y~v~gyPTlkiFrnG~~~~~Y~G~r~a 121 (493)
T KOG0190|consen 45 VLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDAT---EESDLASKYEVRGYPTLKIFRNGRSAQDYNGPREA 121 (493)
T ss_pred EEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecc---hhhhhHhhhcCCCCCeEEEEecCCcceeccCcccH
Confidence 367778899999984 34556666556666665321 124677777778889983 333432 24568
Q ss_pred HHHHHHHHhhcCCCC
Q 022996 207 DNIIKYLVGKYGDGS 221 (289)
Q Consensus 207 ~aIi~YL~~~y~~~~ 221 (289)
+.|+.||.++.++..
T Consensus 122 dgIv~wl~kq~gPa~ 136 (493)
T KOG0190|consen 122 DGIVKWLKKQSGPAS 136 (493)
T ss_pred HHHHHHHHhccCCCc
Confidence 999999999988753
No 209
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=58.70 E-value=4.1 Score=29.43 Aligned_cols=28 Identities=14% Similarity=0.285 Sum_probs=24.0
Q ss_pred HHHHhhhChHHHHHHHHhhhCCCCceec
Q 022996 261 EVWAYEGSPFCKVVREVLVELELPHLQR 288 (289)
Q Consensus 261 ~~~~~e~spF~~~vre~L~elelp~~~~ 288 (289)
.+|.+..+|||..|+..|.|..+||-++
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~ 29 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELR 29 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEE
Confidence 3577788999999999999999998653
No 210
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=58.44 E-value=2.9 Score=30.37 Aligned_cols=28 Identities=29% Similarity=0.303 Sum_probs=24.4
Q ss_pred HHHHhhhChHHHHHHHHhhhCCCCceec
Q 022996 261 EVWAYEGSPFCKVVREVLVELELPHLQR 288 (289)
Q Consensus 261 ~~~~~e~spF~~~vre~L~elelp~~~~ 288 (289)
.+|.+..||++..|+-.|.|+.++|-++
T Consensus 2 ~l~~~~~s~~~~~v~~~L~~~~l~~~~~ 29 (73)
T cd03047 2 TIWGRRSSINVQKVLWLLDELGLPYERI 29 (73)
T ss_pred EEEecCCCcchHHHHHHHHHcCCCCEEE
Confidence 3577889999999999999999999654
No 211
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=57.98 E-value=3.2 Score=30.07 Aligned_cols=28 Identities=14% Similarity=-0.024 Sum_probs=24.5
Q ss_pred HHHHhhhChHHHHHHHHhhhCCCCceec
Q 022996 261 EVWAYEGSPFCKVVREVLVELELPHLQR 288 (289)
Q Consensus 261 ~~~~~e~spF~~~vre~L~elelp~~~~ 288 (289)
.+|.+..||++..++-.|.++.+||-.+
T Consensus 3 ~Ly~~~~s~~s~~v~~~l~~~~i~~~~~ 30 (76)
T cd03053 3 KLYGAAMSTCVRRVLLCLEEKGVDYELV 30 (76)
T ss_pred EEEeCCCChhHHHHHHHHHHcCCCcEEE
Confidence 4677888999999999999999999764
No 212
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=57.85 E-value=37 Score=29.64 Aligned_cols=30 Identities=27% Similarity=0.589 Sum_probs=18.6
Q ss_pred CeEEEEcCCCccHHHHHHHH----HHcCCCeEEE
Q 022996 140 PIEIYEYESCPFCRKVREIV----AVLDLDVLYY 169 (289)
Q Consensus 140 ~itLY~~~~cP~CrkVr~aL----~e~gI~ye~~ 169 (289)
.+..|...+||.|++..-.+ ++.|+++..+
T Consensus 77 vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~I 110 (189)
T TIGR02661 77 TLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMI 110 (189)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEE
Confidence 45667778999999764433 3345544433
No 213
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=57.41 E-value=10 Score=31.19 Aligned_cols=37 Identities=19% Similarity=0.435 Sum_probs=24.2
Q ss_pred CCCCeEEEEcCCCccHHHHHHHH----HHc----CCCeEEEEcCC
Q 022996 137 PEKPIEIYEYESCPFCRKVREIV----AVL----DLDVLYYPCPR 173 (289)
Q Consensus 137 ~~~~itLY~~~~cP~CrkVr~aL----~e~----gI~ye~~~V~~ 173 (289)
....|++|....||+|++....+ ++. .+.|..++++.
T Consensus 12 a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~ 56 (162)
T PF13462_consen 12 APITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPL 56 (162)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSS
T ss_pred CCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccc
Confidence 34568999999999999876544 332 44566666543
No 214
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=57.03 E-value=7.9 Score=29.24 Aligned_cols=53 Identities=8% Similarity=0.091 Sum_probs=31.0
Q ss_pred CeEEEEcCCCccHHHHHHHHHH-----cC--CCeEEEEcCCCCCCChhHHHhhCCCCcccEEE
Q 022996 140 PIEIYEYESCPFCRKVREIVAV-----LD--LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (289)
Q Consensus 140 ~itLY~~~~cP~CrkVr~aL~e-----~g--I~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lv 195 (289)
.+..|+.++|+.|+...-.+.. .+ -.+....++... ..++.+..+-..+|.++
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~Pt~~ 78 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ---HRELCSEFQVRGYPTLL 78 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC---ChhhHhhcCCCcCCEEE
Confidence 5777888999999976544422 22 123333433211 23455556667899884
No 215
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=57.01 E-value=26 Score=31.18 Aligned_cols=31 Identities=16% Similarity=0.602 Sum_probs=20.1
Q ss_pred eEEEEcCCCccHHHHHHHH----HHcCCCeEEEEc
Q 022996 141 IEIYEYESCPFCRKVREIV----AVLDLDVLYYPC 171 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL----~e~gI~ye~~~V 171 (289)
+.+|...+||+|++..-.| ++.|+.+.-+.+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~ 107 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTL 107 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 6678889999999874333 344654444443
No 216
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=56.73 E-value=3 Score=30.04 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=24.0
Q ss_pred HHHHhhhChHHHHHHHHhhhCCCCceec
Q 022996 261 EVWAYEGSPFCKVVREVLVELELPHLQR 288 (289)
Q Consensus 261 ~~~~~e~spF~~~vre~L~elelp~~~~ 288 (289)
.+|.+..+|+|+.++..|.++.++|-++
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~~e~~ 29 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLELNLK 29 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCCCEEE
Confidence 3577789999999999999999998653
No 217
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=56.51 E-value=15 Score=28.37 Aligned_cols=71 Identities=17% Similarity=0.372 Sum_probs=37.8
Q ss_pred eEEEEcCCCccHHHHHHHHHHcC----CCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccChHHHHHHHHhh
Q 022996 141 IEIYEYESCPFCRKVREIVAVLD----LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGK 216 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~g----I~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~aIi~YL~~~ 216 (289)
+..|...+||+|++..-.+.+.. -.+..+.+.........++.+..+...+|++.+ + + +.+.
T Consensus 25 vl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~--~--------~----~~~~ 90 (114)
T cd02967 25 LLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLS--A--------E----LGMA 90 (114)
T ss_pred EEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEec--H--------H----HHhh
Confidence 45556679999997755554421 123333332212222345666666656787763 1 1 3456
Q ss_pred cCCCCCCcc
Q 022996 217 YGDGSVPFM 225 (289)
Q Consensus 217 y~~~~~P~~ 225 (289)
|+....|..
T Consensus 91 ~~~~~~P~~ 99 (114)
T cd02967 91 YQVSKLPYA 99 (114)
T ss_pred cCCCCcCeE
Confidence 666566653
No 218
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=55.54 E-value=14 Score=31.73 Aligned_cols=31 Identities=29% Similarity=0.683 Sum_probs=22.2
Q ss_pred eEEEEcCCCccHHHHHH----HHHHc----CCCeEEEEc
Q 022996 141 IEIYEYESCPFCRKVRE----IVAVL----DLDVLYYPC 171 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~----aL~e~----gI~ye~~~V 171 (289)
|++|....||||.-... ++++. ++.++.+++
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~ 39 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPF 39 (201)
T ss_pred CeEEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeee
Confidence 57899999999995544 44455 566776666
No 219
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=55.17 E-value=3.8 Score=31.26 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=27.4
Q ss_pred CCHHHHHhhhChHHHHHHHHhhhCCCCceec
Q 022996 258 KPLEVWAYEGSPFCKVVREVLVELELPHLQR 288 (289)
Q Consensus 258 ~~l~~~~~e~spF~~~vre~L~elelp~~~~ 288 (289)
..+.+|.+..+|||..|+..|.+..++|-++
T Consensus 17 ~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~ 47 (89)
T cd03055 17 GIIRLYSMRFCPYAQRARLVLAAKNIPHEVI 47 (89)
T ss_pred CcEEEEeCCCCchHHHHHHHHHHcCCCCeEE
Confidence 4567888999999999999999999999764
No 220
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=54.12 E-value=4.1 Score=30.03 Aligned_cols=28 Identities=14% Similarity=0.394 Sum_probs=24.1
Q ss_pred HHHhhhChHHHHHHHHhhhCCCCceecC
Q 022996 262 VWAYEGSPFCKVVREVLVELELPHLQRR 289 (289)
Q Consensus 262 ~~~~e~spF~~~vre~L~elelp~~~~~ 289 (289)
+|+....|+|+.+++.|.++.++|..+|
T Consensus 3 ly~~~~Cp~C~~a~~~L~~~~i~~~~~d 30 (79)
T TIGR02181 3 IYTKPYCPYCTRAKALLSSKGVTFTEIR 30 (79)
T ss_pred EEecCCChhHHHHHHHHHHcCCCcEEEE
Confidence 4666789999999999999999997754
No 221
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=53.59 E-value=66 Score=27.52 Aligned_cols=32 Identities=16% Similarity=0.568 Sum_probs=21.6
Q ss_pred CeEEEEcCCCccHHHHHHHHHH----cCCCeEEEEc
Q 022996 140 PIEIYEYESCPFCRKVREIVAV----LDLDVLYYPC 171 (289)
Q Consensus 140 ~itLY~~~~cP~CrkVr~aL~e----~gI~ye~~~V 171 (289)
.+..|...+||+|++-.-.|.+ .|+.+..+.+
T Consensus 53 ~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~ 88 (153)
T TIGR02738 53 ALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSL 88 (153)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 3777888999999987655543 3555444444
No 222
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=53.53 E-value=4.3 Score=32.08 Aligned_cols=33 Identities=18% Similarity=0.394 Sum_probs=28.1
Q ss_pred CCCHHHHHhhhChHHHHHHHHhhhCCCCceecC
Q 022996 257 PKPLEVWAYEGSPFCKVVREVLVELELPHLQRR 289 (289)
Q Consensus 257 e~~l~~~~~e~spF~~~vre~L~elelp~~~~~ 289 (289)
+.+..+|+-...|||+.++..|.++.++|..+|
T Consensus 7 ~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vd 39 (99)
T TIGR02189 7 EKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHE 39 (99)
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEE
Confidence 356677888899999999999999999997654
No 223
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=53.49 E-value=4.1 Score=29.54 Aligned_cols=26 Identities=27% Similarity=0.193 Sum_probs=23.2
Q ss_pred HHHhhhChHHHHHHHHhhhCCCCcee
Q 022996 262 VWAYEGSPFCKVVREVLVELELPHLQ 287 (289)
Q Consensus 262 ~~~~e~spF~~~vre~L~elelp~~~ 287 (289)
+|.+..||||..++-.|.+..+||-.
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~gl~~~~ 28 (74)
T cd03058 3 LLGAWASPFVLRVRIALALKGVPYEY 28 (74)
T ss_pred EEECCCCchHHHHHHHHHHcCCCCEE
Confidence 56778899999999999999999865
No 224
>PLN02309 5'-adenylylsulfate reductase
Probab=53.38 E-value=72 Score=32.42 Aligned_cols=59 Identities=19% Similarity=0.244 Sum_probs=33.8
Q ss_pred CCCCCeEEEEcCCCccHHHHHHHHHHc-----CCCeEEEEcCCCCCCChhHHHh-hCCCCcccEEEE
Q 022996 136 RPEKPIEIYEYESCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVLQ-MGGKKQFPYMVD 196 (289)
Q Consensus 136 ~~~~~itLY~~~~cP~CrkVr~aL~e~-----gI~ye~~~V~~~~~~~~~e~~~-inp~~tVP~Lvd 196 (289)
+....+..|+-++|++|+...-.+... +..+.+..++.+..+ .++.+ ...-..+|.++.
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~--~~la~~~~~I~~~PTil~ 428 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQ--KEFAKQELQLGSFPTILL 428 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcc--hHHHHhhCCCceeeEEEE
Confidence 344567888889999999766544332 223444444322111 24443 356679999943
No 225
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=53.21 E-value=4 Score=29.89 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=23.4
Q ss_pred HHHHhhhChHHHHHHHHhhhCCCCceec
Q 022996 261 EVWAYEGSPFCKVVREVLVELELPHLQR 288 (289)
Q Consensus 261 ~~~~~e~spF~~~vre~L~elelp~~~~ 288 (289)
.+|.....|+|+.++..|.++.++|.+.
T Consensus 3 ~~y~~~~Cp~C~~~~~~l~~~~~~~~~~ 30 (82)
T cd03419 3 VVFSKSYCPYCKRAKSLLKELGVKPAVV 30 (82)
T ss_pred EEEEcCCCHHHHHHHHHHHHcCCCcEEE
Confidence 3456678999999999999999998654
No 226
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=52.97 E-value=32 Score=26.88 Aligned_cols=57 Identities=21% Similarity=0.296 Sum_probs=28.6
Q ss_pred CCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEc--CCCCCCChhHHHhhCCCCcccEEEE
Q 022996 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLYYPC--PRNGPNFRPKVLQMGGKKQFPYMVD 196 (289)
Q Consensus 139 ~~itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V--~~~~~~~~~e~~~inp~~tVP~Lvd 196 (289)
..+..|...+|++|+...-.|....-.+..+.| .......-.++.+..+ ..+|.+.|
T Consensus 22 ~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~-~~~~~~~d 80 (123)
T cd03011 22 PVLVYFWATWCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVARFMQKKG-YGFPVIND 80 (123)
T ss_pred EEEEEEECCcChhhhhhChHHHHHHhhCCEEEEEccCCCHHHHHHHHHHcC-CCccEEEC
Confidence 346666778999999775444432222443333 2211111223444443 25666665
No 227
>PHA03075 glutaredoxin-like protein; Provisional
Probab=52.93 E-value=17 Score=30.43 Aligned_cols=34 Identities=15% Similarity=0.343 Sum_probs=29.8
Q ss_pred CCCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEc
Q 022996 138 EKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPC 171 (289)
Q Consensus 138 ~~~itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V 171 (289)
...+.|++.+.|+-|.-+..+|+++.=+|+...|
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrV 35 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYDILRV 35 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccccEEEE
Confidence 3568999999999999999999998888887766
No 228
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=52.83 E-value=55 Score=25.88 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=15.8
Q ss_pred CeEEEEcCCCccHHHHHHHHHH
Q 022996 140 PIEIYEYESCPFCRKVREIVAV 161 (289)
Q Consensus 140 ~itLY~~~~cP~CrkVr~aL~e 161 (289)
.+..|...+||.|++..-.|.+
T Consensus 28 vvv~F~a~~C~~C~~~~~~l~~ 49 (127)
T cd03010 28 YLLNVWASWCAPCREEHPVLMA 49 (127)
T ss_pred EEEEEEcCcCHHHHHHHHHHHH
Confidence 3566667899999986655544
No 229
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=52.60 E-value=32 Score=27.65 Aligned_cols=51 Identities=25% Similarity=0.349 Sum_probs=26.6
Q ss_pred cCCCccHHHHHHHHHHc-----CCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEEC
Q 022996 146 YESCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDP 197 (289)
Q Consensus 146 ~~~cP~CrkVr~aL~e~-----gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~ 197 (289)
..+||+|++-...|... +..++.+-|..+.......|.+..+ -.+|++.|+
T Consensus 33 ~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~-~~~p~~~D~ 88 (149)
T cd02970 33 GFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKF-LPFPVYADP 88 (149)
T ss_pred CCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcC-CCCeEEECC
Confidence 46999999754444332 1234444443222211223555443 368988884
No 230
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=52.11 E-value=4.2 Score=28.93 Aligned_cols=28 Identities=25% Similarity=0.303 Sum_probs=24.0
Q ss_pred HHHHhhhChHHHHHHHHhhhCCCCceec
Q 022996 261 EVWAYEGSPFCKVVREVLVELELPHLQR 288 (289)
Q Consensus 261 ~~~~~e~spF~~~vre~L~elelp~~~~ 288 (289)
.+|.+..+|+|..++-.|.+..++|-.+
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~~~~~~ 29 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGIPYEWV 29 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCCcEEE
Confidence 3567788999999999999999998654
No 231
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=51.39 E-value=4 Score=28.60 Aligned_cols=27 Identities=30% Similarity=0.588 Sum_probs=23.1
Q ss_pred HHhhhChHHHHHHHHhhhCCCCceecC
Q 022996 263 WAYEGSPFCKVVREVLVELELPHLQRR 289 (289)
Q Consensus 263 ~~~e~spF~~~vre~L~elelp~~~~~ 289 (289)
|+-.+.|+|+.+++.|.+..+||..+|
T Consensus 4 y~~~~C~~C~~~~~~L~~~~i~y~~~d 30 (60)
T PF00462_consen 4 YTKPGCPYCKKAKEFLDEKGIPYEEVD 30 (60)
T ss_dssp EESTTSHHHHHHHHHHHHTTBEEEEEE
T ss_pred EEcCCCcCHHHHHHHHHHcCCeeeEcc
Confidence 455689999999999999999997653
No 232
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=50.95 E-value=4.9 Score=28.11 Aligned_cols=28 Identities=25% Similarity=0.539 Sum_probs=23.4
Q ss_pred HHHHhhhChHHHHHHHHhhhCCCCceec
Q 022996 261 EVWAYEGSPFCKVVREVLVELELPHLQR 288 (289)
Q Consensus 261 ~~~~~e~spF~~~vre~L~elelp~~~~ 288 (289)
.+|....+|+|+.+++.|.+..++|...
T Consensus 3 ~l~~~~~c~~c~~~~~~l~~~~i~~~~~ 30 (73)
T cd02976 3 TVYTKPDCPYCKATKRFLDERGIPFEEV 30 (73)
T ss_pred EEEeCCCChhHHHHHHHHHHCCCCeEEE
Confidence 3456677899999999999999999765
No 233
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=50.75 E-value=15 Score=29.78 Aligned_cols=57 Identities=12% Similarity=0.005 Sum_probs=33.1
Q ss_pred CCCCCeEEEEcCCCccHHHHHHHHHHcCCC----eEEEEcCCCCCCChhHHH-hhCCCCcccEEE
Q 022996 136 RPEKPIEIYEYESCPFCRKVREIVAVLDLD----VLYYPCPRNGPNFRPKVL-QMGGKKQFPYMV 195 (289)
Q Consensus 136 ~~~~~itLY~~~~cP~CrkVr~aL~e~gI~----ye~~~V~~~~~~~~~e~~-~inp~~tVP~Lv 195 (289)
.....+..|+-+||++|+...-.+.+..-. +....|+.+ . ..++. +...-..+|.|+
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d-~--~~~l~~~~~~I~~~PTl~ 89 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCW-W--PQGKCRKQKHFFYFPVIH 89 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECC-C--ChHHHHHhcCCcccCEEE
Confidence 344567788889999999887665553211 222333221 1 23454 345657899884
No 234
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=50.20 E-value=16 Score=27.49 Aligned_cols=53 Identities=15% Similarity=0.165 Sum_probs=29.7
Q ss_pred CCeEEEEcCCCccHHHHHHHHHHcC------CCeEEEEcCCCCCCChhHHHhhCCCCcccEEE
Q 022996 139 KPIEIYEYESCPFCRKVREIVAVLD------LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (289)
Q Consensus 139 ~~itLY~~~~cP~CrkVr~aL~e~g------I~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lv 195 (289)
..+.+|+.++|++|+...-.+.+.. ..+....++.. . .+.........+|.++
T Consensus 20 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~-~---~~~~~~~~~~~~Pt~~ 78 (104)
T cd02995 20 DVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT-A---NDVPSEFVVDGFPTIL 78 (104)
T ss_pred cEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCc-c---hhhhhhccCCCCCEEE
Confidence 4567788899999998765554322 12333333221 1 1233333347899884
No 235
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=49.93 E-value=5.2 Score=27.98 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=24.2
Q ss_pred HHHHhhhChHHHHHHHHhhhCCCCceecC
Q 022996 261 EVWAYEGSPFCKVVREVLVELELPHLQRR 289 (289)
Q Consensus 261 ~~~~~e~spF~~~vre~L~elelp~~~~~ 289 (289)
.+|....+|+|+.++..|.+..++|..+|
T Consensus 3 ~lf~~~~C~~C~~~~~~l~~~~i~~~~vd 31 (74)
T TIGR02196 3 KVYTTPWCPPCKKAKEYLTSKGIAFEEID 31 (74)
T ss_pred EEEcCCCChhHHHHHHHHHHCCCeEEEEe
Confidence 35667789999999999999999987764
No 236
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=49.55 E-value=96 Score=25.50 Aligned_cols=72 Identities=8% Similarity=0.082 Sum_probs=41.3
Q ss_pred CeEEEEcCCCcc--HHH--HH--------HHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccc----
Q 022996 140 PIEIYEYESCPF--CRK--VR--------EIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM---- 203 (289)
Q Consensus 140 ~itLY~~~~cP~--Crk--Vr--------~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I---- 203 (289)
.+.-|.-.+|+. |+. .. ..|+..++.+-.++++. .+++.+..+-..+|+|+.=.+|..+
T Consensus 30 vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~-----~~~La~~~~I~~iPTl~lfk~G~~v~~~G 104 (120)
T cd03065 30 CLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK-----DAKVAKKLGLDEEDSIYVFKDDEVIEYDG 104 (120)
T ss_pred EEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC-----CHHHHHHcCCccccEEEEEECCEEEEeeC
Confidence 345555566765 972 21 22223455555555532 2678888999999999431155422
Q ss_pred -cChHHHHHHHHhh
Q 022996 204 -YESDNIIKYLVGK 216 (289)
Q Consensus 204 -~ES~aIi~YL~~~ 216 (289)
.....|..||.+.
T Consensus 105 ~~~~~~l~~~l~~~ 118 (120)
T cd03065 105 EFAADTLVEFLLDL 118 (120)
T ss_pred CCCHHHHHHHHHHH
Confidence 2346777777654
No 237
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=49.42 E-value=24 Score=32.61 Aligned_cols=30 Identities=20% Similarity=0.549 Sum_probs=21.2
Q ss_pred CCCCeEEEEcCCCccHH----HHHHHHHHcCCCe
Q 022996 137 PEKPIEIYEYESCPFCR----KVREIVAVLDLDV 166 (289)
Q Consensus 137 ~~~~itLY~~~~cP~Cr----kVr~aL~e~gI~y 166 (289)
++..|.+|+...||||. +...++.+.+-.+
T Consensus 4 ~~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~ 37 (225)
T COG2761 4 MKIEIDVFSDVVCPWCYIGKRRLEKALAEYPQEV 37 (225)
T ss_pred ceEEEEEEeCCcCchhhcCHHHHHHHHHhcCcce
Confidence 34578899999999998 4455666666443
No 238
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=48.60 E-value=36 Score=29.59 Aligned_cols=68 Identities=13% Similarity=0.161 Sum_probs=45.5
Q ss_pred CCCCCCCCeEEEEcCCCccHHHHHHHHHHcCCC----eEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccc
Q 022996 133 LGPRPEKPIEIYEYESCPFCRKVREIVAVLDLD----VLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM 203 (289)
Q Consensus 133 l~~~~~~~itLY~~~~cP~CrkVr~aL~e~gI~----ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I 203 (289)
+.+...+-|.-|+-+||..|+-..-.|++..-+ +....++. ++ ..++.....-.-||+++.=.+|..+
T Consensus 57 Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdt-D~--~~ela~~Y~I~avPtvlvfknGe~~ 128 (150)
T KOG0910|consen 57 VINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDT-DE--HPELAEDYEISAVPTVLVFKNGEKV 128 (150)
T ss_pred HHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEcc-cc--ccchHhhcceeeeeEEEEEECCEEe
Confidence 334566678899999999999887777765433 44444432 22 3678888888899999431166543
No 239
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=48.04 E-value=70 Score=25.48 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=13.8
Q ss_pred eEEEEcCCCccHHHHHHHHH
Q 022996 141 IEIYEYESCPFCRKVREIVA 160 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~ 160 (289)
+..|...+|+.|++..-.|.
T Consensus 22 ll~Fwa~wC~~C~~~~p~l~ 41 (131)
T cd03009 22 GLYFSASWCPPCRAFTPKLV 41 (131)
T ss_pred EEEEECCCChHHHHHhHHHH
Confidence 45555689999997655543
No 240
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=47.73 E-value=5.8 Score=29.28 Aligned_cols=27 Identities=26% Similarity=0.201 Sum_probs=23.1
Q ss_pred HHHHhhhChHHHHHHHHhhhCCCCceec
Q 022996 261 EVWAYEGSPFCKVVREVLVELELPHLQR 288 (289)
Q Consensus 261 ~~~~~e~spF~~~vre~L~elelp~~~~ 288 (289)
.+|.+.+ |||+.|+..|.++.++|-++
T Consensus 3 ~Ly~~~~-~~~~~v~~~l~~~gl~~~~~ 29 (81)
T cd03048 3 TLYTHGT-PNGFKVSIMLEELGLPYEIH 29 (81)
T ss_pred EEEeCCC-CChHHHHHHHHHcCCCcEEE
Confidence 4677776 99999999999999998653
No 241
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=47.65 E-value=28 Score=29.57 Aligned_cols=32 Identities=9% Similarity=0.214 Sum_probs=22.4
Q ss_pred CeEEEEcCCCccHHHHHHHH----HHc--CCCeEEEEc
Q 022996 140 PIEIYEYESCPFCRKVREIV----AVL--DLDVLYYPC 171 (289)
Q Consensus 140 ~itLY~~~~cP~CrkVr~aL----~e~--gI~ye~~~V 171 (289)
.|.+|....||||......| ++. +++++.+..
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~v~~~~~ 39 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLEKLKEEYGGGIEVELHLG 39 (193)
T ss_pred eEEEEECCCCchhhCchHHHHHHHHHhCCCceEEEEec
Confidence 58899999999999554444 343 666666554
No 242
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=47.10 E-value=90 Score=31.81 Aligned_cols=54 Identities=17% Similarity=0.263 Sum_probs=30.6
Q ss_pred CCeEEEEcCCCccHHHHHHHHHHc-------CCCeEEEEcCCCCCCChhHHHhhCCCCcccEEE
Q 022996 139 KPIEIYEYESCPFCRKVREIVAVL-------DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (289)
Q Consensus 139 ~~itLY~~~~cP~CrkVr~aL~e~-------gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lv 195 (289)
.-+..|+-++|++|+...-.+.+. ++.+-.++++.+ . .....+...-..+|.++
T Consensus 373 ~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~-~--~~~~~~~~~I~~~PTii 433 (463)
T TIGR00424 373 AWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGD-Q--KEFAKQELQLGSFPTIL 433 (463)
T ss_pred eEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCC-c--cHHHHHHcCCCccceEE
Confidence 346678889999999776444332 233444444321 1 12222445666899984
No 243
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=47.06 E-value=5.9 Score=31.17 Aligned_cols=23 Identities=13% Similarity=0.132 Sum_probs=20.8
Q ss_pred hhChHHHHHHHHhhhCCCCceec
Q 022996 266 EGSPFCKVVREVLVELELPHLQR 288 (289)
Q Consensus 266 e~spF~~~vre~L~elelp~~~~ 288 (289)
...|||+.+++.|.++.+||..+
T Consensus 25 ~~Cp~C~~ak~lL~~~~i~~~~~ 47 (97)
T TIGR00365 25 PQCGFSARAVQILKACGVPFAYV 47 (97)
T ss_pred CCCchHHHHHHHHHHcCCCEEEE
Confidence 47999999999999999999765
No 244
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=46.25 E-value=19 Score=29.53 Aligned_cols=65 Identities=11% Similarity=-0.032 Sum_probs=40.8
Q ss_pred CCCCeEEEEcCC--CccHHHHHHHHHHcCCCe----EEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCcccc
Q 022996 137 PEKPIEIYEYES--CPFCRKVREIVAVLDLDV----LYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMY 204 (289)
Q Consensus 137 ~~~~itLY~~~~--cP~CrkVr~aL~e~gI~y----e~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ 204 (289)
....+..|+-.+ ||.|+.+.-.|.+.--.| ....++... .+++.+..+-..+|+++.=.+|..+.
T Consensus 27 ~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~---~~~la~~f~V~sIPTli~fkdGk~v~ 97 (111)
T cd02965 27 GGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRAD---EQALAARFGVLRTPALLFFRDGRYVG 97 (111)
T ss_pred CCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCC---CHHHHHHcCCCcCCEEEEEECCEEEE
Confidence 345677777774 999998887775543322 222332211 25788888889999994322665543
No 245
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=46.24 E-value=21 Score=30.63 Aligned_cols=60 Identities=18% Similarity=0.130 Sum_probs=33.2
Q ss_pred CeEEEEcCCCccHHHHHHHHHHc-------CCCeEEEEcCCCCCCChhHHHhhCCCC------cccEEEECCCCcccc
Q 022996 140 PIEIYEYESCPFCRKVREIVAVL-------DLDVLYYPCPRNGPNFRPKVLQMGGKK------QFPYMVDPNTGVSMY 204 (289)
Q Consensus 140 ~itLY~~~~cP~CrkVr~aL~e~-------gI~ye~~~V~~~~~~~~~e~~~inp~~------tVP~Lvd~n~G~~I~ 204 (289)
-+..|+.++|+.|+...-.+.+. ++.+-.++++. .+++.+..+-. ++|+++.=.+|..+.
T Consensus 50 vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~-----~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 50 WLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR-----FPNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC-----CHHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 46777889999999876555432 13333334322 13454443333 489884322665443
No 246
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=45.84 E-value=63 Score=28.71 Aligned_cols=78 Identities=19% Similarity=0.344 Sum_probs=46.9
Q ss_pred CCCeEEEEcCCCccHHHH----------HHHHHHcCCCeEEEEc--------CCCCC---CChhHHHhhCCCCcccEEE-
Q 022996 138 EKPIEIYEYESCPFCRKV----------REIVAVLDLDVLYYPC--------PRNGP---NFRPKVLQMGGKKQFPYMV- 195 (289)
Q Consensus 138 ~~~itLY~~~~cP~CrkV----------r~aL~e~gI~ye~~~V--------~~~~~---~~~~e~~~inp~~tVP~Lv- 195 (289)
.-.+.+|..+.|+||.+. |++|..+ +.+-...+ ..++. ....|+.+..+-...|.++
T Consensus 43 Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~h-f~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtfvF 121 (182)
T COG2143 43 KYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEH-FSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTFVF 121 (182)
T ss_pred cEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhC-eEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceEEE
Confidence 345788999999999854 5555552 11111111 11111 1235788888888889884
Q ss_pred -ECCCCccccC---------hHHHHHHHHhhc
Q 022996 196 -DPNTGVSMYE---------SDNIIKYLVGKY 217 (289)
Q Consensus 196 -d~n~G~~I~E---------S~aIi~YL~~~y 217 (289)
|. +|..|.+ =.+|+.|.++.+
T Consensus 122 fdk-~Gk~Il~lPGY~ppe~Fl~vlkYVa~g~ 152 (182)
T COG2143 122 FDK-TGKTILELPGYMPPEQFLAVLKYVADGK 152 (182)
T ss_pred EcC-CCCEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 43 5555544 368888888654
No 247
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=45.61 E-value=22 Score=31.06 Aligned_cols=59 Identities=10% Similarity=0.072 Sum_probs=33.6
Q ss_pred eEEEEcCCCccHHHHHHHHHHcC---CCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccc
Q 022996 141 IEIYEYESCPFCRKVREIVAVLD---LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM 203 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~g---I~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I 203 (289)
+..|+.++|+.|+.+.-.|..+- -.+.++.|... . . ++.+..+-..+|+++.=.+|..+
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d-~--~-~l~~~f~v~~vPTlllyk~G~~v 148 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRAS-A--T-GASDEFDTDALPALLVYKGGELI 148 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEecc-c--h-hhHHhCCCCCCCEEEEEECCEEE
Confidence 44566689999997655443321 12344444221 1 1 56666777899998432256543
No 248
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=45.08 E-value=33 Score=27.83 Aligned_cols=52 Identities=23% Similarity=0.314 Sum_probs=28.1
Q ss_pred EEEEcC-CCccHHHHHHHHHH-------cCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEE
Q 022996 142 EIYEYE-SCPFCRKVREIVAV-------LDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVD 196 (289)
Q Consensus 142 tLY~~~-~cP~CrkVr~aL~e-------~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd 196 (289)
..+... +||+|++-...|.+ +|+.+..+..... .. -.+|.+. -...+|++.|
T Consensus 33 v~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~-~~-~~~~~~~-~~~~~~~~~D 92 (146)
T PF08534_consen 33 VNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDD-PP-VREFLKK-YGINFPVLSD 92 (146)
T ss_dssp EEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSS-HH-HHHHHHH-TTTTSEEEEE
T ss_pred EEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCC-HH-HHHHHHh-hCCCceEEec
Confidence 333334 89999976644433 3344444443322 21 4555555 3337888887
No 249
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=44.29 E-value=37 Score=34.45 Aligned_cols=73 Identities=18% Similarity=0.372 Sum_probs=53.4
Q ss_pred CCCccHHHHHHHHHHc--CCC-eEEEEcCCCCCCChhHHHhh---CC--CCcccEE----EECCCC--ccccChHHHHHH
Q 022996 147 ESCPFCRKVREIVAVL--DLD-VLYYPCPRNGPNFRPKVLQM---GG--KKQFPYM----VDPNTG--VSMYESDNIIKY 212 (289)
Q Consensus 147 ~~cP~CrkVr~aL~e~--gI~-ye~~~V~~~~~~~~~e~~~i---np--~~tVP~L----vd~n~G--~~I~ES~aIi~Y 212 (289)
..|||-.|+-++..++ +++ |..+-|.+..+.+.+++.++ |+ ..+-|++ +|. +| ..|++..+-++|
T Consensus 2 ~~cp~ya~~ellad~l~~~l~~f~~~ki~~~p~~w~~wl~~~c~~~~w~~~~spiiwrel~~r-ggkg~l~gg~~~f~e~ 80 (452)
T cd05295 2 ADCPYYAKAELLADYLQKNLPDFRVHKIVKHPDEWEDWLQDLCKKNGWSHKRSPIIWRELLDR-GGKGLLLGGCNEFLEY 80 (452)
T ss_pred CCCchhHHHHHHHHHHHhhCCCceEEEccCChHHHHHHHHHHHHhcCCccCCCCeeHHHHHhc-CCCceEecChHHHHHH
Confidence 4799999999988875 454 88888755444445555543 44 4588998 443 44 589999999999
Q ss_pred HHhhcCCC
Q 022996 213 LVGKYGDG 220 (289)
Q Consensus 213 L~~~y~~~ 220 (289)
...-|+..
T Consensus 81 ~~~yyg~~ 88 (452)
T cd05295 81 AESYYGIT 88 (452)
T ss_pred HHHHhCcc
Confidence 99999864
No 250
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=43.89 E-value=46 Score=32.10 Aligned_cols=80 Identities=11% Similarity=0.099 Sum_probs=53.8
Q ss_pred CCCCeEEEEcCCCccHHHHHHHHHHc----CCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCccccC------h
Q 022996 137 PEKPIEIYEYESCPFCRKVREIVAVL----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYE------S 206 (289)
Q Consensus 137 ~~~~itLY~~~~cP~CrkVr~aL~e~----gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~E------S 206 (289)
..+-+++|+.++|+.|+...-.|+.. +=.|....|+.+ ..+.+....+-..||+++-=-+|..+.+ -
T Consensus 43 ~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D---~~p~vAaqfgiqsIPtV~af~dGqpVdgF~G~qPe 119 (304)
T COG3118 43 EVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCD---AEPMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPE 119 (304)
T ss_pred CCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCC---cchhHHHHhCcCcCCeEEEeeCCcCccccCCCCcH
Confidence 33557888889999999877666543 334555555332 2378899999999999842115554433 3
Q ss_pred HHHHHHHHhhcCC
Q 022996 207 DNIIKYLVGKYGD 219 (289)
Q Consensus 207 ~aIi~YL~~~y~~ 219 (289)
+.|-+||++.-+.
T Consensus 120 sqlr~~ld~~~~~ 132 (304)
T COG3118 120 SQLRQFLDKVLPA 132 (304)
T ss_pred HHHHHHHHHhcCh
Confidence 6899999877655
No 251
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=43.63 E-value=66 Score=25.88 Aligned_cols=19 Identities=21% Similarity=0.390 Sum_probs=13.4
Q ss_pred eEEEEcCCCccHHHHHHHH
Q 022996 141 IEIYEYESCPFCRKVREIV 159 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL 159 (289)
+..|...+|+.|+...-.|
T Consensus 21 ll~F~atwC~~C~~~~p~l 39 (132)
T cd02964 21 GLYFSASWCPPCRAFTPKL 39 (132)
T ss_pred EEEEECCCCchHHHHHHHH
Confidence 4445567999999865554
No 252
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=43.33 E-value=7.1 Score=28.50 Aligned_cols=29 Identities=7% Similarity=0.083 Sum_probs=24.0
Q ss_pred HHHHHhhhChHHHHHHHHhhhCCCCceec
Q 022996 260 LEVWAYEGSPFCKVVREVLVELELPHLQR 288 (289)
Q Consensus 260 l~~~~~e~spF~~~vre~L~elelp~~~~ 288 (289)
+.+|.+..+++++.|+-.|.++.+||-.+
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~ 30 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGISWEEE 30 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCCCCEEE
Confidence 34566678999999999999999998654
No 253
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=42.97 E-value=13 Score=26.77 Aligned_cols=27 Identities=22% Similarity=0.102 Sum_probs=23.3
Q ss_pred HHHhhhChHHHHHHHHhhh--CCCCceec
Q 022996 262 VWAYEGSPFCKVVREVLVE--LELPHLQR 288 (289)
Q Consensus 262 ~~~~e~spF~~~vre~L~e--lelp~~~~ 288 (289)
+|.+..||||..++-.|.+ +.+||-++
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~ 31 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHETGLGDDVELV 31 (73)
T ss_pred EecCCCCcHHHHHHHHHHHhCCCCCcEEE
Confidence 5677889999999999999 89998654
No 254
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=42.88 E-value=1.1e+02 Score=28.62 Aligned_cols=111 Identities=16% Similarity=0.240 Sum_probs=60.1
Q ss_pred hhhcccccccccCCcceeccCCCCCCc-cccccccCCcccccccC------CC--CCCCCeEEEEcCCCccHHH----HH
Q 022996 90 LFFRFGTGVFVSGYSASFVSKDEIPPD-QYTLEIAGFKVKETSKL------GP--RPEKPIEIYEYESCPFCRK----VR 156 (289)
Q Consensus 90 ~~~r~g~G~~~~g~~~~lv~~~~~~~~-~~a~~~~g~r~~~~s~l------~~--~~~~~itLY~~~~cP~Crk----Vr 156 (289)
-++.+=.+.|..-|...+....++... ++...-.|++.+....- .. ...-.+.+|+...||||.+ ++
T Consensus 87 ~~~~dka~~Fa~~~~~v~l~~PeLdy~l~~P~~~~a~~~~~~~~~~~~~~~i~~la~~~GL~fFy~s~Cp~C~~~aPil~ 166 (248)
T PRK13703 87 NYWTQQAGLFSMSAKKAMLAHPELDYNLQYSHYNGTVRNQLAADQAQQRQAIAKLAEHYGLMFFYRGQDPIDGQLAQVIN 166 (248)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcceEEEEECCCCchhHHHHHHHH
Confidence 345566777877777766666666433 33333444444332000 00 1234577777789999995 45
Q ss_pred HHHHHcCCCeEEEEcCC-CCCCC---h--hHHHhhCCCCcccEEE--ECCCC
Q 022996 157 EIVAVLDLDVLYYPCPR-NGPNF---R--PKVLQMGGKKQFPYMV--DPNTG 200 (289)
Q Consensus 157 ~aL~e~gI~ye~~~V~~-~~~~~---~--~e~~~inp~~tVP~Lv--d~n~G 200 (289)
.+-...|+++.-+-++- ..+.. + ....+.-+-..+|.|+ +++++
T Consensus 167 ~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~ 218 (248)
T PRK13703 167 DFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSG 218 (248)
T ss_pred HHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCC
Confidence 66677888877777632 11111 1 1112233445789984 45444
No 255
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=42.59 E-value=94 Score=26.51 Aligned_cols=75 Identities=9% Similarity=0.123 Sum_probs=38.2
Q ss_pred eEEEEcCCCccHHHHHHHHHH-------c-----CCCeEEEEcCCC-CCCChhHHHhhCCCCcccEEEECCCCccccChH
Q 022996 141 IEIYEYESCPFCRKVREIVAV-------L-----DLDVLYYPCPRN-GPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESD 207 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e-------~-----gI~ye~~~V~~~-~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~ 207 (289)
+..|.-.+||.|++..-.|.+ + +-.++.+-|..+ .+..-.+|.+..+. +.|++... + +
T Consensus 29 lL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~-~~~~~p~~-~-----~-- 99 (146)
T cd03008 29 LLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPK-KWLFLPFE-D-----E-- 99 (146)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCC-Cceeeccc-c-----h--
Confidence 444555789999998777754 1 123666666322 11112345554443 23332110 1 1
Q ss_pred HHHHHHHhhcCCCCCCcc
Q 022996 208 NIIKYLVGKYGDGSVPFM 225 (289)
Q Consensus 208 aIi~YL~~~y~~~~~P~~ 225 (289)
.-.-+..+|+...+|..
T Consensus 100 -~~~~l~~~y~v~~iPt~ 116 (146)
T cd03008 100 -FRRELEAQFSVEELPTV 116 (146)
T ss_pred -HHHHHHHHcCCCCCCEE
Confidence 11246677777777753
No 256
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=41.85 E-value=8.3 Score=29.65 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=21.3
Q ss_pred hhChHHHHHHHHhhhCCCCceecC
Q 022996 266 EGSPFCKVVREVLVELELPHLQRR 289 (289)
Q Consensus 266 e~spF~~~vre~L~elelp~~~~~ 289 (289)
...|||+.+++.|.++.++|..+|
T Consensus 21 ~~Cp~C~~ak~~L~~~~i~y~~id 44 (90)
T cd03028 21 PRCGFSRKVVQILNQLGVDFGTFD 44 (90)
T ss_pred CCCcHHHHHHHHHHHcCCCeEEEE
Confidence 379999999999999999998754
No 257
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=41.49 E-value=23 Score=25.38 Aligned_cols=22 Identities=27% Similarity=0.179 Sum_probs=20.1
Q ss_pred hChHHHHHHHHhhhCCCCceec
Q 022996 267 GSPFCKVVREVLVELELPHLQR 288 (289)
Q Consensus 267 ~spF~~~vre~L~elelp~~~~ 288 (289)
-||||..|+..|.+..+||-.+
T Consensus 15 ~sp~~~~v~~~L~~~~i~~~~~ 36 (72)
T cd03054 15 LSPECLKVETYLRMAGIPYEVV 36 (72)
T ss_pred CCHHHHHHHHHHHhCCCceEEE
Confidence 5899999999999999999765
No 258
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=41.45 E-value=8.1 Score=29.40 Aligned_cols=28 Identities=18% Similarity=0.432 Sum_probs=24.3
Q ss_pred HHHHhhhChHHHHHHHHhhhCCCCceec
Q 022996 261 EVWAYEGSPFCKVVREVLVELELPHLQR 288 (289)
Q Consensus 261 ~~~~~e~spF~~~vre~L~elelp~~~~ 288 (289)
.+|+..+.|||+.+.+.|.+..+.|..+
T Consensus 4 ~iyt~~~CPyC~~ak~~L~~~g~~~~~i 31 (80)
T COG0695 4 TIYTKPGCPYCKRAKRLLDRKGVDYEEI 31 (80)
T ss_pred EEEECCCCchHHHHHHHHHHcCCCcEEE
Confidence 4566678999999999999999999875
No 259
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.44 E-value=75 Score=26.89 Aligned_cols=70 Identities=16% Similarity=0.169 Sum_probs=39.8
Q ss_pred CCCccHHHH----HHHHHHcCCCeEEEEcCCC-CCCC---hhHHHhhCCC-CcccEEEE-CCCCccccChHHHHHHHHhh
Q 022996 147 ESCPFCRKV----REIVAVLDLDVLYYPCPRN-GPNF---RPKVLQMGGK-KQFPYMVD-PNTGVSMYESDNIIKYLVGK 216 (289)
Q Consensus 147 ~~cP~CrkV----r~aL~e~gI~ye~~~V~~~-~~~~---~~e~~~inp~-~tVP~Lvd-~n~G~~I~ES~aIi~YL~~~ 216 (289)
.|||.|+++ +.+|++..-+..++.|..+ .+.. ...|+.-... .-||.|+- .+.+..+.+.......|.+-
T Consensus 43 SWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~~~~rL~~~q~~~~~Lve~ 122 (128)
T KOG3425|consen 43 SWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWKRQPQRLDGLQCLNDHLVEM 122 (128)
T ss_pred cCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEcCccccchHhHhhHHHHHHH
Confidence 489999986 4666666666555554211 1111 1244444333 57899853 22445677777766666543
No 260
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=41.35 E-value=8 Score=37.18 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=27.5
Q ss_pred CCHHHHHhhhChHHHHHHHHhhhCCCCceec
Q 022996 258 KPLEVWAYEGSPFCKVVREVLVELELPHLQR 288 (289)
Q Consensus 258 ~~l~~~~~e~spF~~~vre~L~elelp~~~~ 288 (289)
-.+.+|.||..|||-.||.-|-=..+||-++
T Consensus 89 L~l~LyQyetCPFCcKVrAFLDyhgisY~VV 119 (370)
T KOG3029|consen 89 LDLVLYQYETCPFCCKVRAFLDYHGISYAVV 119 (370)
T ss_pred ceEEEEeeccCchHHHHHHHHhhcCCceEEE
Confidence 3678899999999999999999999999653
No 261
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=41.01 E-value=11 Score=27.00 Aligned_cols=28 Identities=14% Similarity=0.125 Sum_probs=23.3
Q ss_pred HHHhhhChHHHHHHHHhhhCCCCceecC
Q 022996 262 VWAYEGSPFCKVVREVLVELELPHLQRR 289 (289)
Q Consensus 262 ~~~~e~spF~~~vre~L~elelp~~~~~ 289 (289)
+|....+|+|+.++..|.++.++|..+|
T Consensus 4 ly~~~~C~~C~~~~~~L~~~~~~~~~id 31 (77)
T TIGR02200 4 VYGTTWCGYCAQLMRTLDKLGAAYEWVD 31 (77)
T ss_pred EEECCCChhHHHHHHHHHHcCCceEEEe
Confidence 4556789999999999999999987653
No 262
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=40.90 E-value=62 Score=30.37 Aligned_cols=111 Identities=14% Similarity=0.173 Sum_probs=59.3
Q ss_pred hhhcccccccccCCcceeccCCCCCCc-cccccccCCcccccccCC------C--CCCCCeEEEEcCCCccHHHH----H
Q 022996 90 LFFRFGTGVFVSGYSASFVSKDEIPPD-QYTLEIAGFKVKETSKLG------P--RPEKPIEIYEYESCPFCRKV----R 156 (289)
Q Consensus 90 ~~~r~g~G~~~~g~~~~lv~~~~~~~~-~~a~~~~g~r~~~~s~l~------~--~~~~~itLY~~~~cP~CrkV----r 156 (289)
-++.+=.+.|..-|...+....++... ++...-+|++.+....-. . ...-.+.+|....||+|.+- +
T Consensus 94 ~~~~dka~~Fa~~~~~v~l~~PeLdy~l~~P~~~~a~~~~~~~~~~~~~~~i~~la~~~gL~fFy~~~C~~C~~~apil~ 173 (256)
T TIGR02739 94 RFWTKQSSQFSMTWQKALLAHPELDYTLTHPTSNAARQVYLQLEKEQKEKAIQQLSQSYGLFFFYRGKSPISQKMAPVIQ 173 (256)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCccccCCccHHHHHHHHHHHHHHHHHHHHHHHhceeEEEEECCCCchhHHHHHHHH
Confidence 345566677777777666666566322 122233444333321100 0 22345777777899999964 4
Q ss_pred HHHHHcCCCeEEEEcCCCC-CC---Ch--hHHHhhCCCCcccEEE--ECCCC
Q 022996 157 EIVAVLDLDVLYYPCPRNG-PN---FR--PKVLQMGGKKQFPYMV--DPNTG 200 (289)
Q Consensus 157 ~aL~e~gI~ye~~~V~~~~-~~---~~--~e~~~inp~~tVP~Lv--d~n~G 200 (289)
.+-...|+++..+.++-.+ +. .+ ....+.-+-..+|+|+ +++++
T Consensus 174 ~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~ 225 (256)
T TIGR02739 174 AFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQ 225 (256)
T ss_pred HHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCC
Confidence 5556788888777764221 11 11 1223333456799984 45444
No 263
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=40.27 E-value=10 Score=27.59 Aligned_cols=28 Identities=14% Similarity=0.010 Sum_probs=23.8
Q ss_pred HHHHhhhChHHHHHHHHhhhCCCCceec
Q 022996 261 EVWAYEGSPFCKVVREVLVELELPHLQR 288 (289)
Q Consensus 261 ~~~~~e~spF~~~vre~L~elelp~~~~ 288 (289)
.+|.+..|++|+.|+-.|.++.+||-.+
T Consensus 2 ~ly~~~~s~~~~~v~~~l~~~g~~~~~~ 29 (76)
T cd03050 2 KLYYDLMSQPSRAVYIFLKLNKIPFEEC 29 (76)
T ss_pred EEeeCCCChhHHHHHHHHHHcCCCcEEE
Confidence 3577788999999999999999998654
No 264
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=39.36 E-value=56 Score=30.35 Aligned_cols=74 Identities=18% Similarity=0.159 Sum_probs=50.8
Q ss_pred CCCCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHh-hCCCCcccEEEECCCCccc----cChHHHHH
Q 022996 137 PEKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQ-MGGKKQFPYMVDPNTGVSM----YESDNIIK 211 (289)
Q Consensus 137 ~~~~itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~~~~~~~~e~~~-inp~~tVP~Lvd~n~G~~I----~ES~aIi~ 211 (289)
..+.+++|....|-.|.-.-.+|+++|+-=....+.... +-|.. .++--.||.++. ||..+ .|-.+|-.
T Consensus 9 ~~~~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~----p~f~~~~~~V~SvP~Vf~--DGel~~~dpVdp~~ies 82 (265)
T COG5494 9 IEMEVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAEL----PPFLAFEKGVISVPSVFI--DGELVYADPVDPEEIES 82 (265)
T ss_pred hheEEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCC----ChHHHhhcceeecceEEE--cCeEEEcCCCCHHHHHH
Confidence 456799999999999999999999999864444332211 23333 356679999977 66533 34566766
Q ss_pred HHHhh
Q 022996 212 YLVGK 216 (289)
Q Consensus 212 YL~~~ 216 (289)
-+..+
T Consensus 83 ~~~G~ 87 (265)
T COG5494 83 ILSGQ 87 (265)
T ss_pred HHcCc
Confidence 66554
No 265
>PTZ00056 glutathione peroxidase; Provisional
Probab=39.22 E-value=73 Score=28.19 Aligned_cols=74 Identities=14% Similarity=0.246 Sum_probs=36.2
Q ss_pred eEEEEcCCCccHHHHHHHHHH-------cCCCeEEEEcCC------CCCCChhHHHhhCCCCcccEEEECCCCccccChH
Q 022996 141 IEIYEYESCPFCRKVREIVAV-------LDLDVLYYPCPR------NGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESD 207 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e-------~gI~ye~~~V~~------~~~~~~~e~~~inp~~tVP~Lvd~n~G~~I~ES~ 207 (289)
+.-|...+||+|++-.-.|.+ .|+.+.-+.+.. +....-..|.+..+ -++|++.+ .+..=.+..
T Consensus 43 lv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~-~~fpvl~d--~~v~g~~~~ 119 (199)
T PTZ00056 43 MITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNK-IKYNFFEP--IEVNGENTH 119 (199)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcC-CCceeeee--eeccCCccC
Confidence 455566799999974433322 344443333321 11111233444443 26888864 111112456
Q ss_pred HHHHHHHhhc
Q 022996 208 NIIKYLVGKY 217 (289)
Q Consensus 208 aIi~YL~~~y 217 (289)
.+..||.+..
T Consensus 120 ~l~~~l~~~~ 129 (199)
T PTZ00056 120 ELFKFLKANC 129 (199)
T ss_pred HHHHHHHHhC
Confidence 6777776543
No 266
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=38.93 E-value=1.4e+02 Score=23.47 Aligned_cols=53 Identities=9% Similarity=0.195 Sum_probs=31.6
Q ss_pred eEEEEcCCCccHHHHHH-HHHH------cCCCeEEEEcCCCCCCChhHHHhhCCCCcccEE
Q 022996 141 IEIYEYESCPFCRKVRE-IVAV------LDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYM 194 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~-aL~e------~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~L 194 (289)
+.-++.++|++|.+... .+.. .+-.|....++...+ ...++....+...+|++
T Consensus 21 lv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~-e~~~~~~~~~~~~~P~~ 80 (114)
T cd02958 21 LVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSS-EGQRFLQSYKVDKYPHI 80 (114)
T ss_pred EEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCc-cHHHHHHHhCccCCCeE
Confidence 33446689999987532 2221 122355555543222 24677788888899999
No 267
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=38.34 E-value=12 Score=33.04 Aligned_cols=36 Identities=11% Similarity=0.206 Sum_probs=28.8
Q ss_pred hhcccccccccCCcceeccCCCCCCccccccccCCcccccccCCC
Q 022996 91 FFRFGTGVFVSGYSASFVSKDEIPPDQYTLEIAGFKVKETSKLGP 135 (289)
Q Consensus 91 ~~r~g~G~~~~g~~~~lv~~~~~~~~~~a~~~~g~r~~~~s~l~~ 135 (289)
++-|++|+|+.-.+.. .|..|. +.|.|++|+++++.
T Consensus 108 f~aD~~g~ftk~lgle-ld~~d~--------~~g~RS~R~a~vve 143 (171)
T KOG0541|consen 108 FVADPAGEFTKSLGLE-LDLSDK--------LLGVRSRRYALVVE 143 (171)
T ss_pred EEecCCCceeeeccce-eeeccc--------cCccccccEEEEEe
Confidence 4568999999999994 444455 88999999999854
No 268
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=37.72 E-value=71 Score=27.61 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=27.9
Q ss_pred CeEEEEcCCCccHHHHHHHHHH---cCCCeEEEEcCCCCCCChhHHHhhCCCCcccE-EEE
Q 022996 140 PIEIYEYESCPFCRKVREIVAV---LDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPY-MVD 196 (289)
Q Consensus 140 ~itLY~~~~cP~CrkVr~aL~e---~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~-Lvd 196 (289)
.+..|...+||+|++-.-.|.+ +|+.+.-+.+.. +...-.+|.+..+. ..|+ +.|
T Consensus 71 vvv~FwatwC~~C~~e~p~l~~l~~~~~~vi~v~~~~-~~~~~~~~~~~~~~-~~~~~~~D 129 (185)
T PRK15412 71 VLLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKD-DRQKAISWLKELGN-PYALSLFD 129 (185)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHcCCEEEEEECCC-CHHHHHHHHHHcCC-CCceEEEc
Confidence 3455666799999986544433 454443333222 22112345555443 4554 455
No 269
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=37.09 E-value=31 Score=25.08 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.8
Q ss_pred hChHHHHHHHHhhhCCCCceec
Q 022996 267 GSPFCKVVREVLVELELPHLQR 288 (289)
Q Consensus 267 ~spF~~~vre~L~elelp~~~~ 288 (289)
.||||..|+..|.+..+||-.+
T Consensus 16 ~sp~~~~v~~~L~~~gi~~~~~ 37 (75)
T cd03080 16 LSPFCLKVETFLRMAGIPYENK 37 (75)
T ss_pred CCHHHHHHHHHHHHCCCCcEEe
Confidence 5899999999999999998754
No 270
>PHA03050 glutaredoxin; Provisional
Probab=36.74 E-value=11 Score=30.45 Aligned_cols=31 Identities=13% Similarity=0.330 Sum_probs=25.2
Q ss_pred CCHHHHHhhhChHHHHHHHHhhhCCC---Cceec
Q 022996 258 KPLEVWAYEGSPFCKVVREVLVELEL---PHLQR 288 (289)
Q Consensus 258 ~~l~~~~~e~spF~~~vre~L~elel---p~~~~ 288 (289)
....+|+....|||+.++..|.++.+ +|..+
T Consensus 13 ~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i 46 (108)
T PHA03050 13 NKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIV 46 (108)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEE
Confidence 34667777899999999999999998 66554
No 271
>PTZ00102 disulphide isomerase; Provisional
Probab=36.22 E-value=50 Score=32.41 Aligned_cols=77 Identities=9% Similarity=0.094 Sum_probs=39.5
Q ss_pred CCeEEEEcCCCccHHHHHHHHHHcCCC------eEEEEcCCCCCCChhHHHhhCCCCcccEEE-ECCCCcc--c----cC
Q 022996 139 KPIEIYEYESCPFCRKVREIVAVLDLD------VLYYPCPRNGPNFRPKVLQMGGKKQFPYMV-DPNTGVS--M----YE 205 (289)
Q Consensus 139 ~~itLY~~~~cP~CrkVr~aL~e~gI~------ye~~~V~~~~~~~~~e~~~inp~~tVP~Lv-d~n~G~~--I----~E 205 (289)
.-+..|+.+||++|++..-.+.+..-. +....++.. .+ +...+...-..+|.++ ..+++.+ . ..
T Consensus 377 ~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~-~~--~~~~~~~~v~~~Pt~~~~~~~~~~~~~~~G~~~ 453 (477)
T PTZ00102 377 DVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGT-AN--ETPLEEFSWSAFPTILFVKAGERTPIPYEGERT 453 (477)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECC-CC--ccchhcCCCcccCeEEEEECCCcceeEecCcCC
Confidence 346667779999999877666543211 222222211 11 1122233345788883 2324432 1 23
Q ss_pred hHHHHHHHHhhcC
Q 022996 206 SDNIIKYLVGKYG 218 (289)
Q Consensus 206 S~aIi~YL~~~y~ 218 (289)
...|.++|.+...
T Consensus 454 ~~~l~~~i~~~~~ 466 (477)
T PTZ00102 454 VEGFKEFVNKHAT 466 (477)
T ss_pred HHHHHHHHHHcCC
Confidence 4667777776553
No 272
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=36.21 E-value=87 Score=24.90 Aligned_cols=55 Identities=15% Similarity=0.149 Sum_probs=31.7
Q ss_pred CCeEEEEcCCCccHHHHHHHHHHcC---------CCeEEEEcCCCCCCChhHHHhhCCCCcccEEEE
Q 022996 139 KPIEIYEYESCPFCRKVREIVAVLD---------LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVD 196 (289)
Q Consensus 139 ~~itLY~~~~cP~CrkVr~aL~e~g---------I~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd 196 (289)
.-+..|+.++|+.|+.....+.... +.+-.+++.. . ...++.+..+-..+|.++.
T Consensus 21 ~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~--~-~~~~~~~~~~i~~~Pt~~l 84 (114)
T cd02992 21 AWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCAD--E-ENVALCRDFGVTGYPTLRY 84 (114)
T ss_pred eEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccc--h-hhHHHHHhCCCCCCCEEEE
Confidence 4566778899999997655543321 2222223211 1 1245666666678898843
No 273
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=33.76 E-value=31 Score=25.54 Aligned_cols=22 Identities=23% Similarity=-0.076 Sum_probs=19.7
Q ss_pred hChHHHHHHHHhhhCCCCceec
Q 022996 267 GSPFCKVVREVLVELELPHLQR 288 (289)
Q Consensus 267 ~spF~~~vre~L~elelp~~~~ 288 (289)
-||||..|+-.|.+..+||-++
T Consensus 15 ~Sp~~~kv~~~L~~~~i~~~~~ 36 (84)
T cd03038 15 FSPNVWKTRLALNHKGLEYKTV 36 (84)
T ss_pred cCChhHHHHHHHHhCCCCCeEE
Confidence 5999999999999999998653
No 274
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=33.22 E-value=1.4e+02 Score=26.64 Aligned_cols=52 Identities=4% Similarity=-0.032 Sum_probs=32.1
Q ss_pred ccccc--cccCCcccccccCCCCCCCCeEE--EEcCCCccHHHH---HHHHHHcCCCe------EEEEc
Q 022996 116 DQYTL--EIAGFKVKETSKLGPRPEKPIEI--YEYESCPFCRKV---REIVAVLDLDV------LYYPC 171 (289)
Q Consensus 116 ~~~a~--~~~g~r~~~~s~l~~~~~~~itL--Y~~~~cP~CrkV---r~aL~e~gI~y------e~~~V 171 (289)
||.-+ ..+.-+.|..+.+ + .++.| |.--+|+.|+.- ..+|+..|+++ ..+++
T Consensus 38 ge~~~~~~~~~y~~~~~~~l--~--GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~ 102 (184)
T TIGR01626 38 GEIVLSGKDTVYQPWGSAEL--A--GKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINA 102 (184)
T ss_pred ceEEEcCCcccceeccHHHc--C--CCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEEC
Confidence 55555 4445556665555 1 44444 444599999954 56667788988 55554
No 275
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=33.09 E-value=12 Score=28.09 Aligned_cols=29 Identities=14% Similarity=0.324 Sum_probs=23.4
Q ss_pred HHHHhhhChHHHHHHHHhhh-----CCCCceecC
Q 022996 261 EVWAYEGSPFCKVVREVLVE-----LELPHLQRR 289 (289)
Q Consensus 261 ~~~~~e~spF~~~vre~L~e-----lelp~~~~~ 289 (289)
.+|.....|||+.+++.|.+ ..++|..+|
T Consensus 4 ~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~id 37 (85)
T PRK11200 4 VIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVD 37 (85)
T ss_pred EEEeCCCChhHHHHHHHHHhhcccccCCcEEEEE
Confidence 45666789999999999999 578887654
No 276
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=32.66 E-value=1.2e+02 Score=25.18 Aligned_cols=60 Identities=17% Similarity=0.253 Sum_probs=29.4
Q ss_pred CCCccHHHHH----HHHHHc--CCCeEEEEcCC----CCCCChhHHHh--hCCCCcccEEEECCCCccccChHH
Q 022996 147 ESCPFCRKVR----EIVAVL--DLDVLYYPCPR----NGPNFRPKVLQ--MGGKKQFPYMVDPNTGVSMYESDN 208 (289)
Q Consensus 147 ~~cP~CrkVr----~aL~e~--gI~ye~~~V~~----~~~~~~~e~~~--inp~~tVP~Lvd~n~G~~I~ES~a 208 (289)
.|||.|+++. .++... +..+..+.|.. +++ ...|++ .-.-..||.|+-=+++..|.|...
T Consensus 36 sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp--~n~fR~~p~~~l~~IPTLi~~~~~~rL~e~e~ 107 (119)
T PF06110_consen 36 SWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDP--NNPFRTDPDLKLKGIPTLIRWETGERLVEEEC 107 (119)
T ss_dssp BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-T--TSHHHH--CC---SSSEEEECTSS-EEEHHHH
T ss_pred cccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCC--CCCceEcceeeeeecceEEEECCCCccchhhh
Confidence 4899999886 445543 23344444421 111 124555 344568999974335556666543
No 277
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=31.97 E-value=71 Score=25.38 Aligned_cols=56 Identities=16% Similarity=0.218 Sum_probs=30.0
Q ss_pred CeEEEEc--CCCccHHHHHHHHHH-------cCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEEC
Q 022996 140 PIEIYEY--ESCPFCRKVREIVAV-------LDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDP 197 (289)
Q Consensus 140 ~itLY~~--~~cP~CrkVr~aL~e-------~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~ 197 (289)
.+.|+.+ .+||.|.+....|.+ .| +..+-|..+.......|.+..+...+|++.|+
T Consensus 24 ~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~ 88 (140)
T cd02971 24 WVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGG--AEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDP 88 (140)
T ss_pred eEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHHhcccCCCceEEECC
Confidence 3444443 589999975444433 34 44444432222223455555545678888763
No 278
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=31.37 E-value=21 Score=25.29 Aligned_cols=27 Identities=22% Similarity=0.032 Sum_probs=23.4
Q ss_pred HHHhhhChHHHHHHHHhhhCCCCceec
Q 022996 262 VWAYEGSPFCKVVREVLVELELPHLQR 288 (289)
Q Consensus 262 ~~~~e~spF~~~vre~L~elelp~~~~ 288 (289)
+|.+..++++..++..|.++.+||-.+
T Consensus 3 L~~~~~~~~~~~~~~~l~~~gi~~~~~ 29 (73)
T cd03042 3 LYSYFRSSASYRVRIALNLKGLDYEYV 29 (73)
T ss_pred EecCCCCcchHHHHHHHHHcCCCCeEE
Confidence 567778999999999999999998653
No 279
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=30.48 E-value=52 Score=25.52 Aligned_cols=50 Identities=26% Similarity=0.420 Sum_probs=25.1
Q ss_pred CCCccHHHHHHHHHH-----cCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEEC
Q 022996 147 ESCPFCRKVREIVAV-----LDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDP 197 (289)
Q Consensus 147 ~~cP~CrkVr~aL~e-----~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~ 197 (289)
.+||.|.+....|.+ ....+..+-|..+....-.++.+..+ -.+|++.|+
T Consensus 36 ~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~-~~~~~~~D~ 90 (124)
T PF00578_consen 36 AWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYG-LPFPVLSDP 90 (124)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHT-CSSEEEEET
T ss_pred cCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhc-cccccccCc
Confidence 379999876644443 22234444442222111233443333 678888873
No 280
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=30.30 E-value=55 Score=24.07 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=15.9
Q ss_pred CCeEEEEcCCCccHHHHHHHHHH
Q 022996 139 KPIEIYEYESCPFCRKVREIVAV 161 (289)
Q Consensus 139 ~~itLY~~~~cP~CrkVr~aL~e 161 (289)
..+..|...+|+.|.+....+..
T Consensus 21 ~~ll~f~~~~C~~C~~~~~~l~~ 43 (116)
T cd02966 21 VVLVNFWASWCPPCRAEMPELEA 43 (116)
T ss_pred EEEEEeecccChhHHHHhHHHHH
Confidence 34666777899999976544444
No 281
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=29.86 E-value=1e+02 Score=26.23 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=15.1
Q ss_pred CeEEEEcCCCccHHHHHHHHHH
Q 022996 140 PIEIYEYESCPFCRKVREIVAV 161 (289)
Q Consensus 140 ~itLY~~~~cP~CrkVr~aL~e 161 (289)
-+..|...+||.|++..-.+.+
T Consensus 66 vll~F~a~wC~~C~~~~p~l~~ 87 (173)
T TIGR00385 66 VLLNVWASWCPPCRAEHPYLNE 87 (173)
T ss_pred EEEEEECCcCHHHHHHHHHHHH
Confidence 3555666899999986555543
No 282
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=29.84 E-value=24 Score=25.60 Aligned_cols=27 Identities=15% Similarity=0.103 Sum_probs=23.4
Q ss_pred HHHhhhChHHHHHHHHhhhCCCCceec
Q 022996 262 VWAYEGSPFCKVVREVLVELELPHLQR 288 (289)
Q Consensus 262 ~~~~e~spF~~~vre~L~elelp~~~~ 288 (289)
+|.+..++++..++-.|.++.+||-++
T Consensus 3 Ly~~~~~~~~~~~~~~l~~~gi~~~~~ 29 (75)
T cd03044 3 LYTYPGNPRSLKILAAAKYNGLDVEIV 29 (75)
T ss_pred EecCCCCccHHHHHHHHHHcCCceEEE
Confidence 466778999999999999999998654
No 283
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=29.49 E-value=94 Score=25.06 Aligned_cols=50 Identities=16% Similarity=0.138 Sum_probs=24.7
Q ss_pred cCCCccHHHHHHHHHHc-----CCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEE
Q 022996 146 YESCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVD 196 (289)
Q Consensus 146 ~~~cP~CrkVr~aL~e~-----gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd 196 (289)
..+||.|.+....|... +..+..+-|..+....-.+|.+..+ ..+|++.|
T Consensus 38 ~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~-~~~~~~~D 92 (149)
T cd03018 38 LAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENG-LTFPLLSD 92 (149)
T ss_pred CCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcC-CCceEecC
Confidence 46899999664444332 1223444442222212334555444 36777665
No 284
>smart00594 UAS UAS domain.
Probab=29.31 E-value=2.9e+02 Score=22.08 Aligned_cols=58 Identities=19% Similarity=0.355 Sum_probs=33.2
Q ss_pred CCeEEEEcCCCccHHHHH----------HHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEE--EECCCC
Q 022996 139 KPIEIYEYESCPFCRKVR----------EIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYM--VDPNTG 200 (289)
Q Consensus 139 ~~itLY~~~~cP~CrkVr----------~aL~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~L--vd~n~G 200 (289)
..+..++.++|++|.+.. .++.. .|....++..... ..++.+.....++|.+ +++++|
T Consensus 29 ~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~---~fv~~~~dv~~~e-g~~l~~~~~~~~~P~~~~l~~~~g 98 (122)
T smart00594 29 LLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE---NFIFWQVDVDTSE-GQRVSQFYKLDSFPYVAIVDPRTG 98 (122)
T ss_pred CEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc---CEEEEEecCCChh-HHHHHHhcCcCCCCEEEEEecCCC
Confidence 345555678999998632 33332 3555444322221 2456666777789998 456554
No 285
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=28.75 E-value=75 Score=25.31 Aligned_cols=48 Identities=21% Similarity=0.294 Sum_probs=25.2
Q ss_pred CCCccHHHHHHHH-------HHcCCCeEEEEcCCCCCCChhHHHhhCCCCcccEEEEC
Q 022996 147 ESCPFCRKVREIV-------AVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDP 197 (289)
Q Consensus 147 ~~cP~CrkVr~aL-------~e~gI~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~ 197 (289)
.+||.|.+....| ...|+ +++-|..+....-.+|.+..+. .+|++.|+
T Consensus 34 ~~cp~C~~~~~~l~~~~~~~~~~~~--~vv~is~d~~~~~~~~~~~~~~-~~~~l~D~ 88 (140)
T cd03017 34 DDTPGCTKEACDFRDLYEEFKALGA--VVIGVSPDSVESHAKFAEKYGL-PFPLLSDP 88 (140)
T ss_pred CCCCchHHHHHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHhCC-CceEEECC
Confidence 5799998643332 33454 4444432222223455555543 58888763
No 286
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=28.71 E-value=64 Score=24.26 Aligned_cols=55 Identities=13% Similarity=0.149 Sum_probs=34.3
Q ss_pred CCeEEEEcCCCccHHHHHHHHHHcCC----CeEEEEcCCCCCCChhHHHhhCCCC--cccEEEE
Q 022996 139 KPIEIYEYESCPFCRKVREIVAVLDL----DVLYYPCPRNGPNFRPKVLQMGGKK--QFPYMVD 196 (289)
Q Consensus 139 ~~itLY~~~~cP~CrkVr~aL~e~gI----~ye~~~V~~~~~~~~~e~~~inp~~--tVP~Lvd 196 (289)
..+.+|..++|+.|...+..+.+..- .+....++.. . .+.+.+..+-. .+|+++.
T Consensus 14 ~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~-~--~~~~~~~~~i~~~~~P~~~~ 74 (103)
T cd02982 14 PLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDAD-D--FGRHLEYFGLKEEDLPVIAI 74 (103)
T ss_pred CEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchH-h--hHHHHHHcCCChhhCCEEEE
Confidence 34667777899999988887766332 2444444321 1 24466655665 9999953
No 287
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=27.74 E-value=69 Score=26.48 Aligned_cols=52 Identities=13% Similarity=0.186 Sum_probs=33.4
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCC----eEEEEcCCCCCCChhHHHhhCCCCcccEEE
Q 022996 141 IEIYEYESCPFCRKVREIVAVLDLD----VLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~gI~----ye~~~V~~~~~~~~~e~~~inp~~tVP~Lv 195 (289)
+.=|+..||+.|+..-..|.+.--. +....|+.+ + -+++.+..+-...|+.+
T Consensus 18 VVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVD-e--v~dva~~y~I~amPtfv 73 (114)
T cd02986 18 VLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVD-K--VPVYTQYFDISYIPSTI 73 (114)
T ss_pred EEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEecc-c--cHHHHHhcCceeCcEEE
Confidence 3445668999999987777665432 333333322 2 36788887777788873
No 288
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=27.36 E-value=3.4e+02 Score=22.30 Aligned_cols=81 Identities=14% Similarity=0.116 Sum_probs=44.3
Q ss_pred CCCCCeEEEEc--CCCc---cHHHHHHHHHHc--CCCeEEEEcCCCCCCChhHHHhhCCCC--cccEEE-ECCCC--c-c
Q 022996 136 RPEKPIEIYEY--ESCP---FCRKVREIVAVL--DLDVLYYPCPRNGPNFRPKVLQMGGKK--QFPYMV-DPNTG--V-S 202 (289)
Q Consensus 136 ~~~~~itLY~~--~~cP---~CrkVr~aL~e~--gI~ye~~~V~~~~~~~~~e~~~inp~~--tVP~Lv-d~n~G--~-~ 202 (289)
+....++-|+- ++|. .|.+.-...... .|-+-.+++..-++....++.+..+-. ..|+|. -.|++ . .
T Consensus 17 ~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPTl~lF~~g~~~~~~ 96 (116)
T cd03007 17 KFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESYPVIYLFHGGDFENPV 96 (116)
T ss_pred cCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCCCEEEEEeCCCcCCCc
Confidence 34445677777 7787 777665444333 244555555322222235677766666 899883 23232 1 2
Q ss_pred ccC-----hHHHHHHHHhh
Q 022996 203 MYE-----SDNIIKYLVGK 216 (289)
Q Consensus 203 I~E-----S~aIi~YL~~~ 216 (289)
.++ .++|+.|+.++
T Consensus 97 ~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 97 PYSGADVTVDALQRFLKGN 115 (116)
T ss_pred cCCCCcccHHHHHHHHHhc
Confidence 222 45688887654
No 289
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=26.56 E-value=23 Score=25.32 Aligned_cols=27 Identities=7% Similarity=-0.037 Sum_probs=22.5
Q ss_pred HHHhhhChHHHHHHHHhhhCCCCceec
Q 022996 262 VWAYEGSPFCKVVREVLVELELPHLQR 288 (289)
Q Consensus 262 ~~~~e~spF~~~vre~L~elelp~~~~ 288 (289)
+|.++.++++..|+-.|.+..+||-.+
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~gi~~e~~ 29 (72)
T cd03039 3 LTYFNIRGRGEPIRLLLADAGVEYEDV 29 (72)
T ss_pred EEEEcCcchHHHHHHHHHHCCCCcEEE
Confidence 345567899999999999999998654
No 290
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.66 E-value=65 Score=24.75 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=20.2
Q ss_pred ccHHHHHHHHHHcCCCeEEEEc
Q 022996 150 PFCRKVREIVAVLDLDVLYYPC 171 (289)
Q Consensus 150 P~CrkVr~aL~e~gI~ye~~~V 171 (289)
.||||+...|+..|++||..+-
T Consensus 16 GF~rk~L~I~E~~~is~Eh~PS 37 (76)
T cd04911 16 GFGRKLLSILEDNGISYEHMPS 37 (76)
T ss_pred cHHHHHHHHHHHcCCCEeeecC
Confidence 5999999999999999998774
No 291
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=25.65 E-value=33 Score=24.82 Aligned_cols=26 Identities=23% Similarity=0.475 Sum_probs=21.1
Q ss_pred HHhhhChHHHHHHHHhhhCCCC--ceec
Q 022996 263 WAYEGSPFCKVVREVLVELELP--HLQR 288 (289)
Q Consensus 263 ~~~e~spF~~~vre~L~elelp--~~~~ 288 (289)
|.-...|||+.++..|.++.++ |.+.
T Consensus 4 f~~~~Cp~C~~~~~~L~~~~i~~~~~~~ 31 (84)
T TIGR02180 4 FSKSYCPYCKKAKEILAKLNVKPAYEVV 31 (84)
T ss_pred EECCCChhHHHHHHHHHHcCCCCCCEEE
Confidence 4456789999999999999988 6543
No 292
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=24.60 E-value=25 Score=26.67 Aligned_cols=21 Identities=19% Similarity=0.643 Sum_probs=18.0
Q ss_pred HHHhhhChHHHHHHHHhhhCC
Q 022996 262 VWAYEGSPFCKVVREVLVELE 282 (289)
Q Consensus 262 ~~~~e~spF~~~vre~L~ele 282 (289)
+|+....|||+.+++.|.++.
T Consensus 4 vys~~~Cp~C~~ak~~L~~~~ 24 (86)
T TIGR02183 4 IFGRPGCPYCVRAKQLAEKLA 24 (86)
T ss_pred EEeCCCCccHHHHHHHHHHhC
Confidence 466678999999999999984
No 293
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=24.04 E-value=72 Score=26.88 Aligned_cols=21 Identities=19% Similarity=0.482 Sum_probs=15.0
Q ss_pred CCCeEEEEcCCCccHHHHHHH
Q 022996 138 EKPIEIYEYESCPFCRKVREI 158 (289)
Q Consensus 138 ~~~itLY~~~~cP~CrkVr~a 158 (289)
..-+..++..+|++|++....
T Consensus 24 Kpvmv~f~sdwC~~Ck~l~k~ 44 (130)
T cd02960 24 KPLMVIHHLEDCPHSQALKKA 44 (130)
T ss_pred CeEEEEEeCCcCHhHHHHHHH
Confidence 334556777999999987643
No 294
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=23.93 E-value=59 Score=26.18 Aligned_cols=55 Identities=16% Similarity=0.109 Sum_probs=34.2
Q ss_pred EEEEcCCCccHHHHHHHHHHcC-----CCeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCc
Q 022996 142 EIYEYESCPFCRKVREIVAVLD-----LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGV 201 (289)
Q Consensus 142 tLY~~~~cP~CrkVr~aL~e~g-----I~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~ 201 (289)
.-|+-.||+.|+...=.+..+- +.|-.++++. -.++.+-..-..+|+++.=.+|.
T Consensus 26 vdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde-----~~~~~~~~~V~~~PTf~f~k~g~ 85 (106)
T KOG0907|consen 26 VDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE-----LEEVAKEFNVKAMPTFVFYKGGE 85 (106)
T ss_pred EEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc-----CHhHHHhcCceEeeEEEEEECCE
Confidence 3356689999998765554433 3333344432 46788878888999994312554
No 295
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=23.64 E-value=1.1e+02 Score=25.30 Aligned_cols=20 Identities=10% Similarity=0.069 Sum_probs=13.2
Q ss_pred eEEEEcCCCccHHHHHHHHHH
Q 022996 141 IEIYEYESCPFCRKVREIVAV 161 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e 161 (289)
+..|...+|| |++-.-.|.+
T Consensus 26 vl~fwatwC~-C~~e~p~l~~ 45 (152)
T cd00340 26 LIVNVASKCG-FTPQYEGLEA 45 (152)
T ss_pred EEEEEcCCCC-chHHHHHHHH
Confidence 4456678999 9975554443
No 296
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=23.64 E-value=2.2e+02 Score=26.00 Aligned_cols=37 Identities=8% Similarity=0.175 Sum_probs=30.0
Q ss_pred CCCCCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcC
Q 022996 136 RPEKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCP 172 (289)
Q Consensus 136 ~~~~~itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~ 172 (289)
.....+-||....|+.|-.....+...+-+++++.|.
T Consensus 107 ~~~~rlalFvkd~C~~C~~~~~~l~a~~~~~Diylvg 143 (200)
T TIGR03759 107 QGGGRLALFVKDDCVACDARVQRLLADNAPLDLYLVG 143 (200)
T ss_pred CCCCeEEEEeCCCChHHHHHHHHHhcCCCceeEEEec
Confidence 3455688999999999998777777788889988886
No 297
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=23.63 E-value=54 Score=30.74 Aligned_cols=21 Identities=19% Similarity=0.607 Sum_probs=16.1
Q ss_pred eEEEEcCCCccHHHHHHHHHH
Q 022996 141 IEIYEYESCPFCRKVREIVAV 161 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e 161 (289)
+..-+.++||+|..-||+|..
T Consensus 62 v~~igw~gCP~~A~~sW~L~~ 82 (249)
T PF06053_consen 62 VIFIGWEGCPYCAAESWALYI 82 (249)
T ss_pred EEEEecccCccchhhHHHHHH
Confidence 444467899999999987754
No 298
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=23.47 E-value=62 Score=23.95 Aligned_cols=20 Identities=25% Similarity=0.547 Sum_probs=15.1
Q ss_pred CeEEEEcCCCccHHHHHHHH
Q 022996 140 PIEIYEYESCPFCRKVREIV 159 (289)
Q Consensus 140 ~itLY~~~~cP~CrkVr~aL 159 (289)
-+..++..+|++|++....+
T Consensus 20 vlv~f~a~wC~~C~~l~~~~ 39 (82)
T PF13899_consen 20 VLVDFGADWCPPCKKLEREV 39 (82)
T ss_dssp EEEEEETTTTHHHHHHHHHT
T ss_pred EEEEEECCCCHhHHHHHHHH
Confidence 46677889999999876443
No 299
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=22.65 E-value=71 Score=22.86 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=14.1
Q ss_pred EcCCCccHHHHHHHHHHc
Q 022996 145 EYESCPFCRKVREIVAVL 162 (289)
Q Consensus 145 ~~~~cP~CrkVr~aL~e~ 162 (289)
...+||+|++....+.+.
T Consensus 40 ~~~~C~~C~~~~~~l~~~ 57 (127)
T COG0526 40 WAPWCPPCRAEAPLLEEL 57 (127)
T ss_pred EcCcCHHHHhhchhHHHH
Confidence 479999999987666553
No 300
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=22.43 E-value=67 Score=28.49 Aligned_cols=56 Identities=14% Similarity=0.216 Sum_probs=31.5
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCC---CeEEEEcCCCCCCChhHHHhhCCCCcccEEEECCCCcc
Q 022996 141 IEIYEYESCPFCRKVREIVAVLDL---DVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVS 202 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~gI---~ye~~~V~~~~~~~~~e~~~inp~~tVP~Lvd~n~G~~ 202 (289)
+.-|+.++|+.|+.+.-.|..+-- .+.++.|... ......+-..+|+|+.=.+|..
T Consensus 106 VV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad------~~~~~~~i~~lPTlliyk~G~~ 164 (192)
T cd02988 106 VVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIIST------QCIPNYPDKNLPTILVYRNGDI 164 (192)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhH------HhHhhCCCCCCCEEEEEECCEE
Confidence 445666899999987655544322 2333333211 1234567779999953225543
No 301
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=21.59 E-value=1.3e+02 Score=25.12 Aligned_cols=75 Identities=21% Similarity=0.291 Sum_probs=40.7
Q ss_pred CCCeEEEEcCCC------cc--------HHHHHHHHHHcCCCeEEEEcCCCCCCC-----hhHHHhhCCCCcccEEEECC
Q 022996 138 EKPIEIYEYESC------PF--------CRKVREIVAVLDLDVLYYPCPRNGPNF-----RPKVLQMGGKKQFPYMVDPN 198 (289)
Q Consensus 138 ~~~itLY~~~~c------P~--------CrkVr~aL~e~gI~ye~~~V~~~~~~~-----~~e~~~inp~~tVP~Lvd~n 198 (289)
|++|.+|.-..| .. -..+...|+.+|++++.+++..+...+ -.++++..|..-.|+++.
T Consensus 1 M~~i~ifepamCC~tGvCG~~vd~eL~~~a~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV-- 78 (123)
T PF06953_consen 1 MKKIEIFEPAMCCSTGVCGPSVDPELVRFAADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV-- 78 (123)
T ss_dssp --EEEEEE-S-SSTTS-SSSS--HHHHHHHHHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--
T ss_pred CCceEEeccccccccCccCCCCCHHHHHHHHHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--
Confidence 567888887653 11 123445678899999999985322111 124556688999999987
Q ss_pred CCcc-ccC----hHHHHHHHH
Q 022996 199 TGVS-MYE----SDNIIKYLV 214 (289)
Q Consensus 199 ~G~~-I~E----S~aIi~YL~ 214 (289)
||.+ ..+ -..+.+|+.
T Consensus 79 dGeiv~~G~YPt~eEl~~~~~ 99 (123)
T PF06953_consen 79 DGEIVKTGRYPTNEELAEWLG 99 (123)
T ss_dssp TTEEEEESS---HHHHHHHHT
T ss_pred CCEEEEecCCCCHHHHHHHhC
Confidence 6653 322 345555553
No 302
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=20.93 E-value=71 Score=25.16 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=19.6
Q ss_pred hChHHHHHHHHhhhCCCCceec
Q 022996 267 GSPFCKVVREVLVELELPHLQR 288 (289)
Q Consensus 267 ~spF~~~vre~L~elelp~~~~ 288 (289)
.+|||..||-+|.|..++|-+.
T Consensus 21 ~cpf~~rvrl~L~eKgi~ye~~ 42 (91)
T cd03061 21 NCPFCQRLFMVLWLKGVVFNVT 42 (91)
T ss_pred CChhHHHHHHHHHHCCCceEEE
Confidence 6899999999999999999553
No 303
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=20.89 E-value=69 Score=24.01 Aligned_cols=23 Identities=17% Similarity=0.582 Sum_probs=17.1
Q ss_pred CCeEEEEcC----CCccHHHHHHHHHH
Q 022996 139 KPIEIYEYE----SCPFCRKVREIVAV 161 (289)
Q Consensus 139 ~~itLY~~~----~cP~CrkVr~aL~e 161 (289)
++++||-|- .+.||.||-.+|.+
T Consensus 1 ~~mKLYRfiTGpDDssFChrvta~LN~ 27 (70)
T COG5515 1 MKMKLYRFITGPDDSSFCHRVTAALNK 27 (70)
T ss_pred CcceeeEeecCCchHHHHHHHHHHHhC
Confidence 356788774 46699999888764
No 304
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=20.00 E-value=1.7e+02 Score=21.51 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=27.4
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCC
Q 022996 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPR 173 (289)
Q Consensus 141 itLY~~~~cP~CrkVr~aL~e~gI~ye~~~V~~ 173 (289)
--+..|.......++...|+.+|+++..++++.
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~liP~P~ 35 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVRLIPTPR 35 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEEEeCCCh
Confidence 345667777889999999999999999998753
Done!