Your job contains 1 sequence.
>022999
MAAISLAAPWILRRAVRTFSLPQPLLHLNPGSCFHGTHRPFTFPTSLRHTASGIRHLIQA
VKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLAD
VKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGI
AREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSF
KTIEASLRVDALASAGFKLSRSKLVNLIRYSSLASLVQISAKASAIRSS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 022999
(289 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2037048 - symbol:AT1G53120 species:3702 "Arabi... 921 1.9e-92 1
UNIPROTKB|P74082 - symbol:sll1252 "Sll1252 protein" speci... 448 2.5e-42 1
UNIPROTKB|Q3AAH6 - symbol:CHY_2039 "S4 domain protein" sp... 277 3.3e-24 1
TIGR_CMR|CHY_2039 - symbol:CHY_2039 "S4 domain protein" s... 277 3.3e-24 1
UNIPROTKB|Q81WE2 - symbol:BAS3748 "S4 domain protein" spe... 168 5.7e-11 1
TIGR_CMR|BA_4036 - symbol:BA_4036 "S4 domain protein" spe... 168 5.7e-11 1
UNIPROTKB|Q71XY5 - symbol:LMOf2365_2060 "S4 domain protei... 159 9.6e-10 1
>TAIR|locus:2037048 [details] [associations]
symbol:AT1G53120 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM;IDA] InterPro:IPR002942 Pfam:PF01479 PROSITE:PS50889
SMART:SM00363 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009507
GO:GO:0003723 Gene3D:3.10.290.10 EMBL:AY059839 EMBL:BT001219
EMBL:BT002414 EMBL:BT008717 IPI:IPI00520703 RefSeq:NP_564622.1
UniGene:At.16238 UniGene:At.66953 ProteinModelPortal:Q93YQ0
SMR:Q93YQ0 STRING:Q93YQ0 PaxDb:Q93YQ0 PRIDE:Q93YQ0
EnsemblPlants:AT1G53120.1 GeneID:841746 KEGG:ath:AT1G53120
TAIR:At1g53120 eggNOG:COG2302 HOGENOM:HOG000048758
InParanoid:Q93YQ0 OMA:NTVEAST PhylomeDB:Q93YQ0 ProtClustDB:PLN00051
ArrayExpress:Q93YQ0 Genevestigator:Q93YQ0 InterPro:IPR017506
TIGRFAMs:TIGR03069 Uniprot:Q93YQ0
Length = 320
Score = 921 (329.3 bits), Expect = 1.9e-92, P = 1.9e-92
Identities = 182/269 (67%), Positives = 221/269 (82%)
Query: 1 MAAISLAAPW-ILRRAVRTFSLPQPLLHLNPGSCFHGTHRPFTFPTSLRHTASGIRHLIQ 59
MA SLA PW ILR A R+ + LH N + P +FP LR +A + +
Sbjct: 1 MAVTSLAPPWVILRLAFRSVAASS-CLHTNQKTLITNLSIPTSFP--LRQSALRRCYSAE 57
Query: 60 AVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA 119
A+KG+ D LLKGVGD+ +EVK ILEMARRASS+REVLH+DFLTPP++KES+ LEK A
Sbjct: 58 AIKGDVDFLLKGVGDQAVAKEVKQILEMARRASSKREVLHTDFLTPPIVKESVSLLEKFA 117
Query: 120 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTG 179
DVK VAQGGYP+AERCR+S+GHP+ LTSDPDIVAALSITGNFGFQPCSHGDFLG+ILGTG
Sbjct: 118 DVKIVAQGGYPEAERCRISIGHPDVLTSDPDIVAALSITGNFGFQPCSHGDFLGAILGTG 177
Query: 180 IAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKS 239
I+REK+GDI++Q EKGAQ L+VPEL D+++T+L+KVGNV V+C++IPLLALEYEPPRT S
Sbjct: 178 ISREKLGDILIQEEKGAQVLIVPELVDFVVTALDKVGNVGVTCSKIPLLALEYEPPRTNS 237
Query: 240 FKTIEASLRVDALASAGFKLSRSKLVNLI 268
FKT+EASLR+DA+ASAGFK+SRSKLV+LI
Sbjct: 238 FKTVEASLRIDAVASAGFKISRSKLVDLI 266
>UNIPROTKB|P74082 [details] [associations]
symbol:sll1252 "Sll1252 protein" species:1111708
"Synechocystis sp. PCC 6803 substr. Kazusa" [GO:0030096 "plasma
membrane-derived thylakoid photosystem II" evidence=IDA]
InterPro:IPR002942 Pfam:PF01479 PROSITE:PS50889 SMART:SM00363
GO:GO:0003723 EMBL:BA000022 GenomeReviews:BA000022_GR GO:GO:0030096
Gene3D:3.10.290.10 eggNOG:COG2302 HOGENOM:HOG000048758
InterPro:IPR017506 TIGRFAMs:TIGR03069 PIR:S75599 RefSeq:NP_441480.1
RefSeq:YP_005651538.1 ProteinModelPortal:P74082 IntAct:P74082
STRING:P74082 GeneID:12254190 GeneID:954860 KEGG:syn:sll1252
KEGG:syy:SYNGTS_1585 PATRIC:23840371 OMA:DFLDPRE
ProtClustDB:CLSK893139 Uniprot:P74082
Length = 259
Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
Identities = 95/202 (47%), Positives = 131/202 (64%)
Query: 68 LLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQG 127
LLKG D+ AI V ++ A +A EV+ SDF PP++ E + L ++ + G
Sbjct: 7 LLKGAPDREAIARV---IDQAEQALRTWEVVVSDFCAPPLIAEIQTRFDSLTELHFLPWG 63
Query: 128 GYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 186
GYPQAER RL++ E L ++ + AL + GNF F P SH DFLG++LGTG+ REK+G
Sbjct: 64 GYPQAERQRLAIARAEIPLETEQIPLTALDVAGNFLFDPASHRDFLGALLGTGLVREKVG 123
Query: 187 DIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEAS 246
DIIL GE+GAQ +VVPE+A+++ L +V V V I L L+ PP+TK T+EAS
Sbjct: 124 DIILLGERGAQAIVVPEVAEFISLHLTQVRTVPVKAKAIALEELKIRPPKTKEMTTVEAS 183
Query: 247 LRVDALASAGFKLSRSKLVNLI 268
LR+DA+ASAGF LSRSK+ + +
Sbjct: 184 LRLDAIASAGFGLSRSKMADAV 205
>UNIPROTKB|Q3AAH6 [details] [associations]
symbol:CHY_2039 "S4 domain protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR002942 Pfam:PF01479 PROSITE:PS50889
SMART:SM00363 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003723
Gene3D:3.10.290.10 eggNOG:COG2302 HOGENOM:HOG000048758 OMA:DFLDPRE
RefSeq:YP_360858.1 ProteinModelPortal:Q3AAH6 STRING:Q3AAH6
GeneID:3726280 KEGG:chy:CHY_2039 PATRIC:21277159
BioCyc:CHYD246194:GJCN-2038-MONOMER Uniprot:Q3AAH6
Length = 246
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 70/186 (37%), Positives = 101/186 (54%)
Query: 84 ILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
I ++ RA+ + VL +DFL P + L +V GGYP AE+ R +
Sbjct: 8 IEDLLSRAAKGQIVL-TDFLDPAAASLTRDLLRNYPEVNYKVDGGYPNAEKVRFAFYPIY 66
Query: 144 ALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVP 202
D ++ + + ITGNF FQ +H DFLG+ILGTGI REK+GD+IL G Q +V
Sbjct: 67 VFPEDVELNLGFIEITGNFKFQAVTHRDFLGAILGTGIKREKVGDLILI-PNGCQVVVDR 125
Query: 203 ELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRS 262
+L YLI L+KV V V+ I L +T+ SLR+D++ ++GF +SRS
Sbjct: 126 DLVPYLIQQLDKVHRVGVTVKEIVREELLLPEAKTREVVAFVKSLRLDSVGASGFGISRS 185
Query: 263 KLVNLI 268
++V I
Sbjct: 186 QMVKEI 191
>TIGR_CMR|CHY_2039 [details] [associations]
symbol:CHY_2039 "S4 domain protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR002942 Pfam:PF01479 PROSITE:PS50889
SMART:SM00363 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003723
Gene3D:3.10.290.10 eggNOG:COG2302 HOGENOM:HOG000048758 OMA:DFLDPRE
RefSeq:YP_360858.1 ProteinModelPortal:Q3AAH6 STRING:Q3AAH6
GeneID:3726280 KEGG:chy:CHY_2039 PATRIC:21277159
BioCyc:CHYD246194:GJCN-2038-MONOMER Uniprot:Q3AAH6
Length = 246
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 70/186 (37%), Positives = 101/186 (54%)
Query: 84 ILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
I ++ RA+ + VL +DFL P + L +V GGYP AE+ R +
Sbjct: 8 IEDLLSRAAKGQIVL-TDFLDPAAASLTRDLLRNYPEVNYKVDGGYPNAEKVRFAFYPIY 66
Query: 144 ALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVP 202
D ++ + + ITGNF FQ +H DFLG+ILGTGI REK+GD+IL G Q +V
Sbjct: 67 VFPEDVELNLGFIEITGNFKFQAVTHRDFLGAILGTGIKREKVGDLILI-PNGCQVVVDR 125
Query: 203 ELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRS 262
+L YLI L+KV V V+ I L +T+ SLR+D++ ++GF +SRS
Sbjct: 126 DLVPYLIQQLDKVHRVGVTVKEIVREELLLPEAKTREVVAFVKSLRLDSVGASGFGISRS 185
Query: 263 KLVNLI 268
++V I
Sbjct: 186 QMVKEI 191
>UNIPROTKB|Q81WE2 [details] [associations]
symbol:BAS3748 "S4 domain protein" species:1392 "Bacillus
anthracis" [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR002942 Pfam:PF01479 PROSITE:PS50889 SMART:SM00363
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
Gene3D:3.10.290.10 HOGENOM:HOG000048758 OMA:DFLDPRE
RefSeq:NP_846276.1 RefSeq:YP_020678.1 RefSeq:YP_029999.1
ProteinModelPortal:Q81WE2 DNASU:1086627
EnsemblBacteria:EBBACT00000010693 EnsemblBacteria:EBBACT00000014679
EnsemblBacteria:EBBACT00000021217 GeneID:1086627 GeneID:2818410
GeneID:2850101 KEGG:ban:BA_4036 KEGG:bar:GBAA_4036 KEGG:bat:BAS3748
ProtClustDB:CLSK917204 BioCyc:BANT260799:GJAJ-3806-MONOMER
BioCyc:BANT261594:GJ7F-3924-MONOMER Uniprot:Q81WE2
Length = 255
Score = 168 (64.2 bits), Expect = 5.7e-11, P = 5.7e-11
Identities = 57/194 (29%), Positives = 98/194 (50%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE ++A+ +V +DFL P + M + + D+ G +AER R +
Sbjct: 15 VDKVLEW-KQAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDIAVQFDGATSRAERKRALI- 71
Query: 141 HPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ ++ AQ
Sbjct: 72 YPDYLVVNEEEFQVEGLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQEDR-AQI 130
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIP---LLALEYEPPRTKSFKTIEASLRVDALASA 255
+V E+ Y+ +L+ +G V VS + + +L ++ E KS T+ +SLR+D + +
Sbjct: 131 VVAKEVVSYIEMNLQSIGKVKVSLSPVKGEKILQIQ-ETWGEKS-GTV-SSLRLDVMLAE 187
Query: 256 GFKLSRSKLVNLIR 269
+SR K+ I+
Sbjct: 188 MLHISRQKVQPFIK 201
>TIGR_CMR|BA_4036 [details] [associations]
symbol:BA_4036 "S4 domain protein" species:198094 "Bacillus
anthracis str. Ames" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR002942
Pfam:PF01479 PROSITE:PS50889 SMART:SM00363 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
Gene3D:3.10.290.10 HOGENOM:HOG000048758 OMA:DFLDPRE
RefSeq:NP_846276.1 RefSeq:YP_020678.1 RefSeq:YP_029999.1
ProteinModelPortal:Q81WE2 DNASU:1086627
EnsemblBacteria:EBBACT00000010693 EnsemblBacteria:EBBACT00000014679
EnsemblBacteria:EBBACT00000021217 GeneID:1086627 GeneID:2818410
GeneID:2850101 KEGG:ban:BA_4036 KEGG:bar:GBAA_4036 KEGG:bat:BAS3748
ProtClustDB:CLSK917204 BioCyc:BANT260799:GJAJ-3806-MONOMER
BioCyc:BANT261594:GJ7F-3924-MONOMER Uniprot:Q81WE2
Length = 255
Score = 168 (64.2 bits), Expect = 5.7e-11, P = 5.7e-11
Identities = 57/194 (29%), Positives = 98/194 (50%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE ++A+ +V +DFL P + M + + D+ G +AER R +
Sbjct: 15 VDKVLEW-KQAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDIAVQFDGATSRAERKRALI- 71
Query: 141 HPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ ++ AQ
Sbjct: 72 YPDYLVVNEEEFQVEGLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQEDR-AQI 130
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIP---LLALEYEPPRTKSFKTIEASLRVDALASA 255
+V E+ Y+ +L+ +G V VS + + +L ++ E KS T+ +SLR+D + +
Sbjct: 131 VVAKEVVSYIEMNLQSIGKVKVSLSPVKGEKILQIQ-ETWGEKS-GTV-SSLRLDVMLAE 187
Query: 256 GFKLSRSKLVNLIR 269
+SR K+ I+
Sbjct: 188 MLHISRQKVQPFIK 201
>UNIPROTKB|Q71XY5 [details] [associations]
symbol:LMOf2365_2060 "S4 domain protein" species:265669
"Listeria monocytogenes serotype 4b str. F2365" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR002942 Pfam:PF01479 PROSITE:PS50889
SMART:SM00363 GO:GO:0003723 EMBL:AE017262 GenomeReviews:AE017262_GR
Gene3D:3.10.290.10 eggNOG:COG2302 HOGENOM:HOG000048758 OMA:DFLDPRE
RefSeq:YP_014653.1 ProteinModelPortal:Q71XY5 STRING:Q71XY5
GeneID:2799062 KEGG:lmf:LMOf2365_2060 PATRIC:20325415
ProtClustDB:CLSK564719 Uniprot:Q71XY5
Length = 258
Score = 159 (61.0 bits), Expect = 9.6e-10, P = 9.6e-10
Identities = 52/185 (28%), Positives = 84/185 (45%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 157
+DFL P + + ++ GG AER R + +P+ T ++ D +A I
Sbjct: 35 TDFLDPRQRFITETVIGGYDEINVQFFGGVAHAERRRALI-YPDYYTPTEADFEIALFHI 93
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
F +H LG+++ G+ R+ GDI+ G + Q LV + DYL LEK+G
Sbjct: 94 RYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGTEW-QLLVESTMKDYLTLQLEKIGK 152
Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSLASLV 277
V+V L Y P + +S+R+D + S +SR K L+ A LV
Sbjct: 153 VNVMLEETDLANAVYAPVVWEEMGLTVSSMRLDVIISNAHHISRQKAKQLVT----AGLV 208
Query: 278 QISAK 282
+++ K
Sbjct: 209 KVNWK 213
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.135 0.386 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 289 289 0.00088 115 3 11 22 0.50 33
33 0.43 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 7
No. of states in DFA: 591 (63 KB)
Total size of DFA: 172 KB (2101 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.60u 0.14s 24.74t Elapsed: 00:00:01
Total cpu time: 24.60u 0.14s 24.74t Elapsed: 00:00:01
Start: Sat May 11 06:14:36 2013 End: Sat May 11 06:14:37 2013