BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022999
(289 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225461477|ref|XP_002282453.1| PREDICTED: putative RNA-binding protein ylmH [Vitis vinifera]
gi|302142996|emb|CBI20291.3| unnamed protein product [Vitis vinifera]
Length = 321
Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/268 (72%), Positives = 225/268 (83%), Gaps = 1/268 (0%)
Query: 1 MAAISLAAPWILRRAVRTFSLPQPLLHLNPGSCFHGTHRPFTFPTSLRHTASGIRHLIQA 60
MAA P +LR+A+ +F LP L H+N ++ R F T L +ASG+ HL QA
Sbjct: 1 MAATGFTTPSVLRKALHSF-LPLRLTHINNTLFYYKNLRSFPLSTHLNSSASGMCHLAQA 59
Query: 61 VKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLAD 120
+KG+ + LLKGV D++ IE VKHILEMA+RAS+RREVLH+DFLTPPVLKESM+ LEKLAD
Sbjct: 60 MKGDANSLLKGVADRSTIEAVKHILEMAKRASARREVLHTDFLTPPVLKESMIVLEKLAD 119
Query: 121 VKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGI 180
+KAVAQGGYPQAERCRLSVGH E LT+ PDIVAAL ITGNFGFQ CSHGDFLG+ILGTGI
Sbjct: 120 MKAVAQGGYPQAERCRLSVGHSEVLTTAPDIVAALRITGNFGFQSCSHGDFLGAILGTGI 179
Query: 181 AREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSF 240
AREK+GDIILQGEKGAQ L+VPEL D+L++SLEKVGNVSVSCT++PLLALEYE PRT +F
Sbjct: 180 AREKLGDIILQGEKGAQVLIVPELVDFLVSSLEKVGNVSVSCTKMPLLALEYEEPRTTTF 239
Query: 241 KTIEASLRVDALASAGFKLSRSKLVNLI 268
KTIE SLRVDALASAGFKLSRSKLV+LI
Sbjct: 240 KTIELSLRVDALASAGFKLSRSKLVDLI 267
>gi|255586534|ref|XP_002533905.1| RNA binding protein, putative [Ricinus communis]
gi|223526138|gb|EEF28479.1| RNA binding protein, putative [Ricinus communis]
Length = 231
Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust.
Identities = 178/219 (81%), Positives = 199/219 (90%)
Query: 51 ASGIRHLIQAVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKE 110
A GI L QA+K DLLK VGDK+ +EEVKHIL+MARRASSRRE LH+DFLTPP+LKE
Sbjct: 13 ALGICQLAQAMKSEVSDLLKSVGDKSVVEEVKHILDMARRASSRREALHTDFLTPPILKE 72
Query: 111 SMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGD 170
SM+ LEKLAD+KAV QGGYPQAERCRLSVGHPEAL +DPDI+AALSITGNF FQPCSHGD
Sbjct: 73 SMLLLEKLADIKAVGQGGYPQAERCRLSVGHPEALMNDPDIIAALSITGNFAFQPCSHGD 132
Query: 171 FLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLAL 230
FLGSILGTGI+REK+GDIILQGEKGAQ L VPEL D++++SL+KVGNVSVSC RIPLLAL
Sbjct: 133 FLGSILGTGISREKVGDIILQGEKGAQILTVPELVDFIMSSLDKVGNVSVSCARIPLLAL 192
Query: 231 EYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIR 269
EYEPPRT++F TIEASLRVDALASAGFK+SRSKLV+LIR
Sbjct: 193 EYEPPRTRTFNTIEASLRVDALASAGFKISRSKLVDLIR 231
>gi|18404337|ref|NP_564622.1| RNA-binding S4 domain-containing protein [Arabidopsis thaliana]
gi|16648939|gb|AAL24321.1| Unknown protein [Arabidopsis thaliana]
gi|24899783|gb|AAN65106.1| Unknown protein [Arabidopsis thaliana]
gi|27311617|gb|AAO00774.1| Unknown protein [Arabidopsis thaliana]
gi|30984534|gb|AAP42730.1| At1g53120 [Arabidopsis thaliana]
gi|332194772|gb|AEE32893.1| RNA-binding S4 domain-containing protein [Arabidopsis thaliana]
Length = 320
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 182/269 (67%), Positives = 221/269 (82%), Gaps = 4/269 (1%)
Query: 1 MAAISLAAPW-ILRRAVRTFSLPQPLLHLNPGSCFHGTHRPFTFPTSLRHTASGIRHLIQ 59
MA SLA PW ILR A R+ + LH N + P +FP LR +A + +
Sbjct: 1 MAVTSLAPPWVILRLAFRSVA-ASSCLHTNQKTLITNLSIPTSFP--LRQSALRRCYSAE 57
Query: 60 AVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA 119
A+KG+ D LLKGVGD+ +EVK ILEMARRASS+REVLH+DFLTPP++KES+ LEK A
Sbjct: 58 AIKGDVDFLLKGVGDQAVAKEVKQILEMARRASSKREVLHTDFLTPPIVKESVSLLEKFA 117
Query: 120 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTG 179
DVK VAQGGYP+AERCR+S+GHP+ LTSDPDIVAALSITGNFGFQPCSHGDFLG+ILGTG
Sbjct: 118 DVKIVAQGGYPEAERCRISIGHPDVLTSDPDIVAALSITGNFGFQPCSHGDFLGAILGTG 177
Query: 180 IAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKS 239
I+REK+GDI++Q EKGAQ L+VPEL D+++T+L+KVGNV V+C++IPLLALEYEPPRT S
Sbjct: 178 ISREKLGDILIQEEKGAQVLIVPELVDFVVTALDKVGNVGVTCSKIPLLALEYEPPRTNS 237
Query: 240 FKTIEASLRVDALASAGFKLSRSKLVNLI 268
FKT+EASLR+DA+ASAGFK+SRSKLV+LI
Sbjct: 238 FKTVEASLRIDAVASAGFKISRSKLVDLI 266
>gi|359807576|ref|NP_001241156.1| uncharacterized protein LOC100793767 [Glycine max]
gi|255642537|gb|ACU21532.1| unknown [Glycine max]
Length = 324
Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust.
Identities = 186/296 (62%), Positives = 229/296 (77%), Gaps = 15/296 (5%)
Query: 1 MAAISLAAPWILRRAVRTFSLPQP-------LLHLNPGSCFHGTHRPFTFPTSLRHTASG 53
+ A S W LRRA + F++ L L C H + TSL ASG
Sbjct: 3 VTASSFGTTWCLRRAAQAFAISHSHILRNNVKLSLQRNFCSH----LLSVSTSL---ASG 55
Query: 54 IRHLIQAVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMM 113
+ +QA+KG D LLKGVG+++ +EVKHILEMARRAS +RE+LH+DFLTPPVLKESM
Sbjct: 56 VSQTVQALKGEVDLLLKGVGERSVTKEVKHILEMARRASLKREILHTDFLTPPVLKESMQ 115
Query: 114 ALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLG 173
LEKLADVKA+AQGGYPQAERCR+SVGHPE LTSDPDI++ALSITGNF F+PCSHGDFLG
Sbjct: 116 VLEKLADVKAIAQGGYPQAERCRISVGHPEELTSDPDIISALSITGNFQFEPCSHGDFLG 175
Query: 174 SILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYE 233
SILGTGI REK+GDIILQGE+GAQ +VVPEL ++L+++L KV NV VSCT+IPL++L+YE
Sbjct: 176 SILGTGIVREKLGDIILQGEQGAQIIVVPELVEFLMSTLVKVRNVPVSCTKIPLISLDYE 235
Query: 234 PPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSL-ASLVQISAKASAIRS 288
PPRTKSFKTIEASLRVDALASAGFK+SRSKLV++I + + + ++ K + ++S
Sbjct: 236 PPRTKSFKTIEASLRVDALASAGFKVSRSKLVDMISNGDVRINWIPVTTKGTTLKS 291
>gi|449457021|ref|XP_004146247.1| PREDICTED: putative RNA-binding protein YlmH-like [Cucumis sativus]
gi|449495519|ref|XP_004159865.1| PREDICTED: putative RNA-binding protein YlmH-like [Cucumis sativus]
Length = 319
Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust.
Identities = 188/267 (70%), Positives = 223/267 (83%), Gaps = 7/267 (2%)
Query: 3 AISLAAPWILRRAVRTFSLPQPL-LHLNPGSCFHGTHRPFTFPTSLRHTASGIRHLIQAV 61
A S+AA W LRRA + S +PL L+LN CF+ FP+S T SGI L+QAV
Sbjct: 5 ATSIAALWSLRRAAQFSSFRRPLALNLNR-LCFNEAR----FPSSPLGT-SGICQLVQAV 58
Query: 62 KGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADV 121
KG+ D LL GVGDK I +VK IL MA+R+ SRREVLH++FLTPPV+KESM+A++KLADV
Sbjct: 59 KGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADV 118
Query: 122 KAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIA 181
KA+AQGGYP+AERCR+SVGH + LTSDPDI++ALSITGNF F PCSHGDFLGSILGTGIA
Sbjct: 119 KAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIA 178
Query: 182 REKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFK 241
REK+GDI+LQ E GAQ ++VPEL D+LI+SL KVGNV+VSCTRIPL ALEYEPP+TK+FK
Sbjct: 179 REKLGDIMLQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFK 238
Query: 242 TIEASLRVDALASAGFKLSRSKLVNLI 268
TIEASLRVDA+ASAGFK+SRSKLV+LI
Sbjct: 239 TIEASLRVDAIASAGFKISRSKLVDLI 265
>gi|147798253|emb|CAN67613.1| hypothetical protein VITISV_010260 [Vitis vinifera]
Length = 269
Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 175/213 (82%), Positives = 196/213 (92%)
Query: 56 HLIQAVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMAL 115
HL QA+KG+ + LLKGV D++ IE VKHILEMA+RAS+RREVLH+DFLTPPVLKESM+ L
Sbjct: 3 HLAQAMKGDANSLLKGVADRSTIEAVKHILEMAKRASARREVLHTDFLTPPVLKESMIVL 62
Query: 116 EKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSI 175
EKLAD+KAVAQGGYPQAERCRLSVGH E LT+ PDIVAAL ITGNFGFQ CSHGDFLG+I
Sbjct: 63 EKLADMKAVAQGGYPQAERCRLSVGHSEVLTTAPDIVAALRITGNFGFQSCSHGDFLGAI 122
Query: 176 LGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPP 235
LGTGIAREK+GDIILQGEKGAQ L+VPEL D+L++SLEKVGNVSVSCT++PLLALEYE P
Sbjct: 123 LGTGIAREKLGDIILQGEKGAQVLIVPELVDFLVSSLEKVGNVSVSCTKMPLLALEYEEP 182
Query: 236 RTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
RT +FKTIE SLRVDALASAGFKLSRSKLV+LI
Sbjct: 183 RTTTFKTIELSLRVDALASAGFKLSRSKLVDLI 215
>gi|357452969|ref|XP_003596761.1| hypothetical protein MTR_2g085340 [Medicago truncatula]
gi|355485809|gb|AES67012.1| hypothetical protein MTR_2g085340 [Medicago truncatula]
Length = 325
Score = 360 bits (923), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 180/295 (61%), Positives = 225/295 (76%), Gaps = 10/295 (3%)
Query: 1 MAAI--SLAAPWILRRAVRTFSLPQPLLHLNPGSCFHG----THRPFTFPTSLRHTASGI 54
MAA S W LRR + F+L G+ T +F TS + SG
Sbjct: 1 MAATTTSFGTAWCLRRVTQAFALSHSHTLRTNGNNLSFQRTLTSHLLSFSTS---SDSGA 57
Query: 55 RHLIQAVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMA 114
+QA K D LLKGVG+K+ EVKH+LEMARRAS +RE+LH++FLTPPVLKESM
Sbjct: 58 STTVQASKREVDVLLKGVGEKSVENEVKHVLEMARRASLKREILHTNFLTPPVLKESMQV 117
Query: 115 LEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGS 174
LEKLAD+KA+AQGGYPQAERCR+SVGHP+ LTSDPD+++ALSITGNF F+PCSHGDFLGS
Sbjct: 118 LEKLADIKALAQGGYPQAERCRISVGHPDELTSDPDVISALSITGNFQFEPCSHGDFLGS 177
Query: 175 ILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEP 234
ILGTGIAREK+GDIILQGE+GAQ +VVPEL ++L ++L+KV NV V+CT+IPL++L+YEP
Sbjct: 178 ILGTGIAREKVGDIILQGEQGAQIIVVPELVEFLTSALDKVRNVPVTCTKIPLISLDYEP 237
Query: 235 PRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSL-ASLVQISAKASAIRS 288
PRTKSFKTIEASLRVDA+ASAGFK+SRSKLV++I + + + I+ K + ++S
Sbjct: 238 PRTKSFKTIEASLRVDAVASAGFKISRSKLVDMISNGDVRINWIPITTKGTTVKS 292
>gi|217074322|gb|ACJ85521.1| unknown [Medicago truncatula]
Length = 325
Score = 359 bits (922), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 180/295 (61%), Positives = 225/295 (76%), Gaps = 10/295 (3%)
Query: 1 MAAI--SLAAPWILRRAVRTFSLPQPLLHLNPGSCFHG----THRPFTFPTSLRHTASGI 54
MAA S W LRR + F+L G+ T +F TS + SG
Sbjct: 1 MAATTTSFGTAWCLRRVTQAFALSHSHTLRTNGNNLSFQRTLTSHLLSFSTS---SDSGA 57
Query: 55 RHLIQAVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMA 114
+QA K D LLKGVG+K+ EVKH+LEMARRAS +RE+LH++FLTPPVLKESM
Sbjct: 58 STTVQASKREVDVLLKGVGEKSVENEVKHVLEMARRASLKREILHTNFLTPPVLKESMRV 117
Query: 115 LEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGS 174
LEKLAD+KA+AQGGYPQAERCR+SVGHP+ LTSDPD+++ALSITGNF F+PCSHGDFLGS
Sbjct: 118 LEKLADIKALAQGGYPQAERCRISVGHPDELTSDPDVISALSITGNFQFEPCSHGDFLGS 177
Query: 175 ILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEP 234
ILGTGIAREK+GDIILQGE+GAQ +VVPEL ++L ++L+KV NV V+CT+IPL++L+YEP
Sbjct: 178 ILGTGIAREKVGDIILQGEQGAQIIVVPELVEFLTSALDKVRNVPVTCTKIPLISLDYEP 237
Query: 235 PRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSL-ASLVQISAKASAIRS 288
PRTKSFKTIEASLRVDA+ASAGFK+SRSKLV++I + + + I+ K + ++S
Sbjct: 238 PRTKSFKTIEASLRVDAVASAGFKISRSKLVDMISNGDVRINWIPITTKGTTVKS 292
>gi|224114944|ref|XP_002316899.1| predicted protein [Populus trichocarpa]
gi|222859964|gb|EEE97511.1| predicted protein [Populus trichocarpa]
Length = 268
Score = 343 bits (879), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 169/213 (79%), Positives = 189/213 (88%), Gaps = 1/213 (0%)
Query: 56 HLIQAVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMAL 115
H+ QA KG LKGV DK+ IEEVK IL+MARRAS RREVLH+DFLTPP LKES+ L
Sbjct: 3 HVAQATKGEVV-ALKGVEDKSVIEEVKRILDMARRASLRREVLHTDFLTPPTLKESLHVL 61
Query: 116 EKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSI 175
EKLADVKA+AQGGYPQAERCRLSVGHPE LTSDPDIVAALSITGNFGFQ CSHGDFLG+I
Sbjct: 62 EKLADVKAIAQGGYPQAERCRLSVGHPETLTSDPDIVAALSITGNFGFQLCSHGDFLGAI 121
Query: 176 LGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPP 235
LGTGIAR K+GDII+ G K AQ L+VP+L DY+++SL+KVG+VSVSCT IPL A+EYEPP
Sbjct: 122 LGTGIARNKLGDIIVLGGKRAQVLLVPDLVDYIVSSLDKVGDVSVSCTPIPLHAIEYEPP 181
Query: 236 RTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
RTKSFKT+EASLRVDALASAGFK+SRSKLV+LI
Sbjct: 182 RTKSFKTVEASLRVDALASAGFKISRSKLVDLI 214
>gi|297847696|ref|XP_002891729.1| hypothetical protein ARALYDRAFT_314636 [Arabidopsis lyrata subsp.
lyrata]
gi|297337571|gb|EFH67988.1| hypothetical protein ARALYDRAFT_314636 [Arabidopsis lyrata subsp.
lyrata]
Length = 759
Score = 333 bits (853), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 166/269 (61%), Positives = 203/269 (75%), Gaps = 27/269 (10%)
Query: 1 MAAISLAAPWI-LRRAVRTFSLPQPLLHLNPGSCFHGTHRPFTFPTSLRHTASGIRHLIQ 59
MA SLA PWI LR+ R+ + LH N + P +FP LRH+A ++ +
Sbjct: 439 MAVTSLAPPWIILRQTFRSVA-ASSYLHSNHKTLISNLSIPASFP--LRHSALRRCYIAE 495
Query: 60 AVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA 119
A+KG+ D LLKGVGD+ +EVK ILEMARRA+S+REVLH+DFLTPP++KES++ L K A
Sbjct: 496 AIKGDVDFLLKGVGDQAVAKEVKQILEMARRAASKREVLHTDFLTPPIVKESVLVLGKFA 555
Query: 120 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTG 179
DVK VAQGGYP+AERCR+S+GHP+ LT+DPDIVAALSITGNFGFQPCSHGDFLG+ILGTG
Sbjct: 556 DVKIVAQGGYPEAERCRISIGHPDVLTNDPDIVAALSITGNFGFQPCSHGDFLGAILGTG 615
Query: 180 IAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKS 239
I+REK+GDI++Q VGNV V+CT+IPLLALEYEPPRT S
Sbjct: 616 ISREKLGDILIQ-----------------------VGNVGVTCTKIPLLALEYEPPRTNS 652
Query: 240 FKTIEASLRVDALASAGFKLSRSKLVNLI 268
FKT+EASLR+DA+ASAGFK+SRSKLV+LI
Sbjct: 653 FKTVEASLRIDAVASAGFKISRSKLVDLI 681
>gi|9454543|gb|AAF87866.1|AC022520_10 Unknown protein [Arabidopsis thaliana]
Length = 773
Score = 332 bits (851), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 168/269 (62%), Positives = 201/269 (74%), Gaps = 27/269 (10%)
Query: 1 MAAISLAAPW-ILRRAVRTFSLPQPLLHLNPGSCFHGTHRPFTFPTSLRHTASGIRHLIQ 59
MA SLA PW ILR A R+ + LH N + P +FP LR +A + +
Sbjct: 453 MAVTSLAPPWVILRLAFRSVA-ASSCLHTNQKTLITNLSIPTSFP--LRQSALRRCYSAE 509
Query: 60 AVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA 119
A+KG+ D LLKGVGD+ +EVK ILEMARRASS+REVLH+DFLTPP++KES+ LEK A
Sbjct: 510 AIKGDVDFLLKGVGDQAVAKEVKQILEMARRASSKREVLHTDFLTPPIVKESVSLLEKFA 569
Query: 120 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTG 179
DVK VAQGGYP+AERCR+S+GHP+ LTSDPDIVAALSITGNFGFQPCSHGDFLG+ILGTG
Sbjct: 570 DVKIVAQGGYPEAERCRISIGHPDVLTSDPDIVAALSITGNFGFQPCSHGDFLGAILGTG 629
Query: 180 IAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKS 239
I+REK+GDI++Q VGNV V+C++IPLLALEYEPPRT S
Sbjct: 630 ISREKLGDILIQ-----------------------VGNVGVTCSKIPLLALEYEPPRTNS 666
Query: 240 FKTIEASLRVDALASAGFKLSRSKLVNLI 268
FKT+EASLR+DA+ASAGFK+SRSKLV+LI
Sbjct: 667 FKTVEASLRIDAVASAGFKISRSKLVDLI 695
>gi|242054411|ref|XP_002456351.1| hypothetical protein SORBIDRAFT_03g034470 [Sorghum bicolor]
gi|241928326|gb|EES01471.1| hypothetical protein SORBIDRAFT_03g034470 [Sorghum bicolor]
Length = 304
Score = 327 bits (838), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 151/209 (72%), Positives = 186/209 (88%)
Query: 60 AVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA 119
AV D +KG D+N+ EEV++IL+MA+RAS RR+V H++FLTPP++KE+M+A+EKLA
Sbjct: 42 AVAAARDSAVKGSVDRNSAEEVRNILDMAQRASQRRDVFHTNFLTPPIVKEAMLAVEKLA 101
Query: 120 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTG 179
D+KAVAQGGYPQAERCR+SVGHP+ +TS+PD+VAALSI+GNF +PCSHGDFLG+ILGTG
Sbjct: 102 DIKAVAQGGYPQAERCRISVGHPDFMTSNPDVVAALSISGNFRLEPCSHGDFLGAILGTG 161
Query: 180 IAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKS 239
I REK+GDI+LQGE+GAQ LV P L DYLI++LEKVG V VSCT+IPLLALEYEPPRT S
Sbjct: 162 ITREKVGDILLQGERGAQVLVDPGLVDYLISTLEKVGKVGVSCTQIPLLALEYEPPRTNS 221
Query: 240 FKTIEASLRVDALASAGFKLSRSKLVNLI 268
FKT+E+SLRVDALASAGFK+SR+KL +LI
Sbjct: 222 FKTVESSLRVDALASAGFKISRTKLASLI 250
>gi|195639066|gb|ACG39001.1| RNA-binding S4 [Zea mays]
Length = 304
Score = 325 bits (834), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 151/209 (72%), Positives = 182/209 (87%)
Query: 60 AVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA 119
AV D +KG D+N+ EEV++IL MA RAS RR+V H++FLTPP++KE+M+ALEK A
Sbjct: 42 AVAAARDSAVKGSVDRNSAEEVRNILNMAERASQRRDVFHTNFLTPPIVKETMLALEKFA 101
Query: 120 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTG 179
D KAVAQGGYPQAERCR+SVGHP+ +TS+PD+VAALSI+GNF + CSHGDFLG+ILGTG
Sbjct: 102 DTKAVAQGGYPQAERCRISVGHPDVMTSNPDVVAALSISGNFRLESCSHGDFLGAILGTG 161
Query: 180 IAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKS 239
I REK+GDI+LQGE+GAQ LV PEL DYLI++LEKVG V VSCT+IPLLALEYEPPRT S
Sbjct: 162 ITREKVGDILLQGERGAQVLVDPELVDYLISTLEKVGKVGVSCTQIPLLALEYEPPRTNS 221
Query: 240 FKTIEASLRVDALASAGFKLSRSKLVNLI 268
FKT+E+SLRVDALASAGFK+SR+KL +LI
Sbjct: 222 FKTVESSLRVDALASAGFKISRTKLASLI 250
>gi|218189042|gb|EEC71469.1| hypothetical protein OsI_03722 [Oryza sativa Indica Group]
Length = 305
Score = 325 bits (832), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 165/272 (60%), Positives = 203/272 (74%), Gaps = 28/272 (10%)
Query: 2 AAISLAAPWILRRAVRTFSLPQPLLHLNPGSCFHGTHRPFT---FPTSLRHTASGIRHLI 58
AA+SLA+P LRR + H PF PTS SG H
Sbjct: 3 AAVSLASP--LRRVL---------------------HVPFARRAIPTSYHFIPSGRCHAA 39
Query: 59 QAVKGNF--DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALE 116
+ D +K D+NA EE++ IL+MA+RAS RR+V H++FLTPP++KE M+A+E
Sbjct: 40 LSFAAAAAGDSAVKASLDRNAAEELRSILDMAQRASQRRDVFHTNFLTPPIVKECMLAIE 99
Query: 117 KLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSIL 176
KLAD+KAVAQGGYPQAERCR+SVGHP+ +TS+PD+VAALSI+GNF +PCSHGDFLG+IL
Sbjct: 100 KLADIKAVAQGGYPQAERCRVSVGHPDCMTSNPDVVAALSISGNFRLEPCSHGDFLGAIL 159
Query: 177 GTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPR 236
GTGI R+K+GDI+LQGE+GAQ LV PEL DYL ++LEKVG V VSCT+IPLLALEYEPPR
Sbjct: 160 GTGITRDKVGDILLQGERGAQVLVDPELVDYLTSTLEKVGKVGVSCTQIPLLALEYEPPR 219
Query: 237 TKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
TKSFKT+E+SLRVDAL SAGFK+SR+KL +LI
Sbjct: 220 TKSFKTVESSLRVDALGSAGFKISRTKLASLI 251
>gi|212274707|ref|NP_001130102.1| uncharacterized protein LOC100191195 [Zea mays]
gi|194688290|gb|ACF78229.1| unknown [Zea mays]
gi|223975061|gb|ACN31718.1| unknown [Zea mays]
gi|414880496|tpg|DAA57627.1| TPA: RNA-binding S4 isoform 1 [Zea mays]
gi|414880497|tpg|DAA57628.1| TPA: RNA-binding S4 isoform 2 [Zea mays]
gi|414880498|tpg|DAA57629.1| TPA: RNA-binding S4 isoform 3 [Zea mays]
Length = 304
Score = 324 bits (830), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 151/209 (72%), Positives = 181/209 (86%)
Query: 60 AVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA 119
AV D +KG D+N+ EEV++IL MA RAS RR V H++FLTPP++KE+M+ALEK A
Sbjct: 42 AVAAARDLAVKGSVDRNSAEEVRNILNMAERASQRRNVFHTNFLTPPIVKEAMLALEKFA 101
Query: 120 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTG 179
D KAVAQGGYPQAERCR+SVGHP+ +TS+PD+VAALSI+GNF + CSHGDFLG+ILGTG
Sbjct: 102 DTKAVAQGGYPQAERCRISVGHPDVMTSNPDVVAALSISGNFRLESCSHGDFLGAILGTG 161
Query: 180 IAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKS 239
I REK+GDI+LQGE+GAQ LV PEL DYLI++LEKVG V VSCT+IPLLALEYEPPRT S
Sbjct: 162 ITREKVGDILLQGERGAQVLVDPELVDYLISTLEKVGKVGVSCTQIPLLALEYEPPRTNS 221
Query: 240 FKTIEASLRVDALASAGFKLSRSKLVNLI 268
FKT+E+SLRVDALASAGFK+SR+KL +LI
Sbjct: 222 FKTVESSLRVDALASAGFKISRTKLASLI 250
>gi|297597609|ref|NP_001044235.2| Os01g0747700 [Oryza sativa Japonica Group]
gi|57899502|dbj|BAD86964.1| S4 domain protein-like [Oryza sativa Japonica Group]
gi|255673682|dbj|BAF06149.2| Os01g0747700 [Oryza sativa Japonica Group]
Length = 305
Score = 323 bits (829), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 156/236 (66%), Positives = 191/236 (80%), Gaps = 5/236 (2%)
Query: 38 HRPFT---FPTSLRHTASGIRHLIQAVKGNF--DDLLKGVGDKNAIEEVKHILEMARRAS 92
H PF PTS SG H + D +K D+NA EE++ IL+MA+RAS
Sbjct: 16 HVPFARRAIPTSYHFFPSGRCHAALSFAAAAAGDSAVKASLDRNAAEELRSILDMAQRAS 75
Query: 93 SRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIV 152
RR+V H++FLTPP++KE M+A+EKLAD+KAVAQGGYPQAERCR+SVGHP+ +TS+PD+V
Sbjct: 76 QRRDVFHTNFLTPPIVKECMLAIEKLADIKAVAQGGYPQAERCRVSVGHPDCMTSNPDVV 135
Query: 153 AALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSL 212
AALSI+GNF +PCSHGDFLG+ILGTGI R+K+GDI+LQGE+GAQ LV PEL DYL ++L
Sbjct: 136 AALSISGNFRLEPCSHGDFLGAILGTGITRDKVGDILLQGERGAQVLVDPELVDYLTSTL 195
Query: 213 EKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
EKVG V VSCT+IPLLALEYEPPRTKSFKT+E+SLRVDAL SAGFK+SR+KL +LI
Sbjct: 196 EKVGKVGVSCTQIPLLALEYEPPRTKSFKTVESSLRVDALGSAGFKISRTKLASLI 251
>gi|222619243|gb|EEE55375.1| hypothetical protein OsJ_03443 [Oryza sativa Japonica Group]
Length = 290
Score = 323 bits (828), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 156/236 (66%), Positives = 191/236 (80%), Gaps = 5/236 (2%)
Query: 38 HRPFT---FPTSLRHTASGIRHLIQAVKGNF--DDLLKGVGDKNAIEEVKHILEMARRAS 92
H PF PTS SG H + D +K D+NA EE++ IL+MA+RAS
Sbjct: 16 HVPFARRAIPTSYHFFPSGRCHAALSFAAAAAGDSAVKASLDRNAAEELRSILDMAQRAS 75
Query: 93 SRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIV 152
RR+V H++FLTPP++KE M+A+EKLAD+KAVAQGGYPQAERCR+SVGHP+ +TS+PD+V
Sbjct: 76 QRRDVFHTNFLTPPIVKECMLAIEKLADIKAVAQGGYPQAERCRVSVGHPDCMTSNPDVV 135
Query: 153 AALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSL 212
AALSI+GNF +PCSHGDFLG+ILGTGI R+K+GDI+LQGE+GAQ LV PEL DYL ++L
Sbjct: 136 AALSISGNFRLEPCSHGDFLGAILGTGITRDKVGDILLQGERGAQVLVDPELVDYLTSTL 195
Query: 213 EKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
EKVG V VSCT+IPLLALEYEPPRTKSFKT+E+SLRVDAL SAGFK+SR+KL +LI
Sbjct: 196 EKVGKVGVSCTQIPLLALEYEPPRTKSFKTVESSLRVDALGSAGFKISRTKLASLI 251
>gi|326523405|dbj|BAJ88743.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 305
Score = 308 bits (789), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 140/203 (68%), Positives = 177/203 (87%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
D KG ++ EEV IL+MA+RAS RR+V H+ FLTPP++ E+M+A+EKLAD+KA+A
Sbjct: 49 DSSAKGSVHRHVTEEVMGILDMAQRASQRRDVFHTSFLTPPIITEAMLAIEKLADIKAIA 108
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
QGGYPQAERCR+SVGHP+++ +DPD+VAALSI+GNF +PCSHGDFLG+ILG GI R+K+
Sbjct: 109 QGGYPQAERCRISVGHPDSMRNDPDVVAALSISGNFRLEPCSHGDFLGAILGAGITRDKV 168
Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
GDI+LQGE+GAQ LV PEL DYL ++LEKVG V VSCT+IPLLA+EYEPPRTKSFKT+E+
Sbjct: 169 GDILLQGERGAQVLVDPELVDYLTSTLEKVGKVGVSCTQIPLLAIEYEPPRTKSFKTVES 228
Query: 246 SLRVDALASAGFKLSRSKLVNLI 268
SLRVDA+ASAGFK+SR+KL ++I
Sbjct: 229 SLRVDAVASAGFKISRTKLGSMI 251
>gi|357136417|ref|XP_003569801.1| PREDICTED: putative RNA-binding protein ylmH-like [Brachypodium
distachyon]
Length = 222
Score = 295 bits (756), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 135/185 (72%), Positives = 166/185 (89%)
Query: 84 ILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
IL+MA AS RR+V H+ FLTPPV+KE+M+A+EKLA +KAVAQGGYPQAERCR+SVGHP+
Sbjct: 3 ILDMAETASQRRDVFHTSFLTPPVIKEAMLAIEKLAGIKAVAQGGYPQAERCRISVGHPD 62
Query: 144 ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE 203
++ S+PD+VAALSI+GNF +PCSHGDFLG+ILG GI REK+GDI+LQ E+GAQ LV P+
Sbjct: 63 SMKSNPDVVAALSISGNFRLEPCSHGDFLGAILGAGITREKVGDILLQEERGAQVLVDPD 122
Query: 204 LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 263
L DYL ++LEKVG V VSCT+IPLLALEYEPP+TKSFKT+E+SLRVDA+ASAGFK+SR+K
Sbjct: 123 LVDYLTSTLEKVGKVGVSCTQIPLLALEYEPPKTKSFKTVESSLRVDAVASAGFKISRTK 182
Query: 264 LVNLI 268
L +LI
Sbjct: 183 LGSLI 187
>gi|116784861|gb|ABK23497.1| unknown [Picea sitchensis]
Length = 332
Score = 280 bits (715), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 131/203 (64%), Positives = 171/203 (84%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
+D LKG+ +A VK IL A++A+S RE+ HSDFL PPV+++++ A++KL+DV+A+
Sbjct: 76 EDHLKGLSKGSAESPVKLILVQAQKAASGREIFHSDFLMPPVVEDALSAIKKLSDVEALV 135
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
QGGYPQAERCRLS+GH + ++S PD V+ALSI+GNF F P SHGDFLG++L TGI REK+
Sbjct: 136 QGGYPQAERCRLSIGHTDVISSAPDAVSALSISGNFTFDPASHGDFLGAVLATGIRREKV 195
Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
GDI+LQGEKGAQ +VVPEL DY+++SL +V NV VSC+ IPLLALE++PPRTK K++EA
Sbjct: 196 GDILLQGEKGAQIIVVPELVDYIVSSLTQVHNVPVSCSPIPLLALEFQPPRTKVLKSVEA 255
Query: 246 SLRVDALASAGFKLSRSKLVNLI 268
SLRVDA+ASAGF++SRSKLVNLI
Sbjct: 256 SLRVDAIASAGFQMSRSKLVNLI 278
>gi|388517071|gb|AFK46597.1| unknown [Medicago truncatula]
Length = 222
Score = 266 bits (679), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 133/220 (60%), Positives = 163/220 (74%), Gaps = 9/220 (4%)
Query: 1 MAAI--SLAAPWILRRAVRTFSLPQPLLHLNPGSCFHG----THRPFTFPTSLRHTASGI 54
MAA S W LRR + F+L G+ T +F TS + SG
Sbjct: 1 MAATTTSFGTAWCLRRVTQAFALSHSHTLRTNGNNLSFQRTLTSHLLSFSTS---SDSGA 57
Query: 55 RHLIQAVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMA 114
+QA K D LLKGVG+K+ EVKH+LEMARRAS +RE+LH++FLTPPVLKESM
Sbjct: 58 STTVQASKREVDVLLKGVGEKSVENEVKHVLEMARRASLKREILHTNFLTPPVLKESMRV 117
Query: 115 LEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGS 174
LEKLAD+KA+AQGGYPQAERCR+SVGHP+ LTSDPD+++ALSITGNF F+PCSHGDFLGS
Sbjct: 118 LEKLADIKALAQGGYPQAERCRISVGHPDELTSDPDVISALSITGNFQFEPCSHGDFLGS 177
Query: 175 ILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 214
ILGTGIAREK+GDIILQGE+GAQ +VVPEL ++L ++L++
Sbjct: 178 ILGTGIAREKVGDIILQGEQGAQIIVVPELVEFLTSALDR 217
>gi|168015016|ref|XP_001760047.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688797|gb|EDQ75172.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 276
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 120/212 (56%), Positives = 155/212 (73%), Gaps = 10/212 (4%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
+ LL GV DK +++V ILE AR A+ R EV HS FLTPPVL +++ A+ +L+DV +
Sbjct: 12 NHLLLGV-DKAHVDDVARILEQARTAADRWEVAHSAFLTPPVLNDALTAVRRLSDVGVLV 70
Query: 126 QGGYPQAERCRLSVGHPEALTSD---------PDIVAALSITGNFGFQPCSHGDFLGSIL 176
GGY QAERCRLSVGH E + + P VAALS++GNF F+ +HGDFLGSIL
Sbjct: 71 SGGYAQAERCRLSVGHVETIEAGSLEGGNAGYPGAVAALSVSGNFMFESATHGDFLGSIL 130
Query: 177 GTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPR 236
GTG+ R+K+GDII+QGEKGAQ LVVPEL ++ +SL +V NV+V + IPL AL+ + PR
Sbjct: 131 GTGVTRDKVGDIIMQGEKGAQILVVPELVEFFCSSLVQVRNVAVQTSAIPLSALQVKAPR 190
Query: 237 TKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+FK++EASLRVDAL SAGF++SRSKL LI
Sbjct: 191 VDTFKSVEASLRVDALTSAGFRMSRSKLAELI 222
>gi|307106329|gb|EFN54575.1| hypothetical protein CHLNCDRAFT_35967 [Chlorella variabilis]
Length = 332
Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 112/226 (49%), Positives = 154/226 (68%), Gaps = 7/226 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
DDLL+GV D E V ++E+A+RA+ VLHSDF TPPV+ +++M L+++ADV VA
Sbjct: 71 DDLLRGV-DAEHRESVARVVELAQRAADSWAVLHSDFHTPPVVADALMVLQRMADVAGVA 129
Query: 126 QGGYPQAERCRLSVGHPEA---LTSDPDI---VAALSITGNFGFQPCSHGDFLGSILGTG 179
GGYPQAERCRL+VG EA L DP VAA+ +TGNF F P SH DFLG+ LGTG
Sbjct: 130 WGGYPQAERCRLAVGREEAVEGLAGDPSQLGGVAAVEVTGNFMFDPASHRDFLGACLGTG 189
Query: 180 IAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKS 239
I R K+GDI+++GE+GAQ LV P L ++L +L +V V V + L L+ PR +
Sbjct: 190 IERGKVGDIVVRGEQGAQILVAPNLVEHLEAALTQVRTVPVRAAAVALSELQVRAPRVEE 249
Query: 240 FKTIEASLRVDALASAGFKLSRSKLVNLIRYSSLASLVQISAKASA 285
++E+SLR+DA+ASAGF++SRSK+ +LI+ + + + KASA
Sbjct: 250 LSSVESSLRLDAVASAGFRMSRSKMADLIKAGDVRVNWRAAGKASA 295
>gi|302767986|ref|XP_002967413.1| hypothetical protein SELMODRAFT_86884 [Selaginella moellendorffii]
gi|300165404|gb|EFJ32012.1| hypothetical protein SELMODRAFT_86884 [Selaginella moellendorffii]
Length = 245
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 106/191 (55%), Positives = 135/191 (70%), Gaps = 9/191 (4%)
Query: 87 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 146
A RA R+EVLH+DFLTPP L+ES+ + KLADV V GGY QAERCRLS+G + +
Sbjct: 1 QADRAVERQEVLHTDFLTPPALQESLACVRKLADVGVVVSGGYAQAERCRLSLGPADLIR 60
Query: 147 SD-------PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII-LQGEKGAQF 198
+ P V+ALS++G F +HGDFLG++LGTGI REK+GDII L +GAQ
Sbjct: 61 ASQCSAGGYPGAVSALSVSGKFVHDAANHGDFLGAVLGTGIVREKVGDIIVLDCSQGAQI 120
Query: 199 LVVPELADYLITSLEKV-GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
LVVPEL +YLI SL++ G + + C IPL +E PR K+ K++EASLR+DA+ASAGF
Sbjct: 121 LVVPELVEYLIASLKQASGRIRLQCKEIPLAEIEIHKPRVKALKSVEASLRLDAVASAGF 180
Query: 258 KLSRSKLVNLI 268
KLSRSKL +LI
Sbjct: 181 KLSRSKLADLI 191
>gi|302753752|ref|XP_002960300.1| hypothetical protein SELMODRAFT_73367 [Selaginella moellendorffii]
gi|300171239|gb|EFJ37839.1| hypothetical protein SELMODRAFT_73367 [Selaginella moellendorffii]
Length = 245
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 105/191 (54%), Positives = 134/191 (70%), Gaps = 9/191 (4%)
Query: 87 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 146
A RA R+EVLH+DFLTPP L+ES+ + KLADV V GGY QAERCRLS+G + +
Sbjct: 1 QADRAVERQEVLHTDFLTPPALQESLACVRKLADVGVVVSGGYAQAERCRLSLGPADLIR 60
Query: 147 SD-------PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII-LQGEKGAQF 198
+ P V+ALS++G F +HGDFLG++LGTGI REK+GDII L +GAQ
Sbjct: 61 ASQCSAGGYPGAVSALSVSGKFVHDAANHGDFLGAVLGTGIVREKVGDIIVLDCSQGAQI 120
Query: 199 LVVPELADYLITSLEKV-GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
LV PEL +YLI SL++ G + + C IPL +E PR K+ K++EASLR+DA+ASAGF
Sbjct: 121 LVAPELVEYLIASLKQASGRIRLQCKEIPLAEIEIHKPRVKALKSVEASLRLDAVASAGF 180
Query: 258 KLSRSKLVNLI 268
KLSRSKL +LI
Sbjct: 181 KLSRSKLADLI 191
>gi|159465535|ref|XP_001690978.1| hypothetical protein CHLREDRAFT_128015 [Chlamydomonas reinhardtii]
gi|158279664|gb|EDP05424.1| predicted protein [Chlamydomonas reinhardtii]
Length = 291
Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 103/197 (52%), Positives = 139/197 (70%), Gaps = 7/197 (3%)
Query: 80 EVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSV 139
EV +LE+A RA+ R +V+ +DFLTPP++ +SM AL+ DV V GGY QAERCRL++
Sbjct: 42 EVARVLEIAERATDRWDVVWTDFLTPPIVADSMAALQGRQDVICVPWGGYAQAERCRLAL 101
Query: 140 GHPE---ALTSDP---DIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQG 192
G E +L SDP D V AL + GNF F P H DFLG+ILGT G+ REK+GDI++QG
Sbjct: 102 GREELMESLRSDPQQLDGVVALQVKGNFMFDPAKHPDFLGAILGTAGVVREKVGDILVQG 161
Query: 193 EKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDAL 252
E GAQ LV P+L ++ TSL +V V V RIPL L PPR + F ++EAS+R+DA+
Sbjct: 162 ESGAQILVDPDLVEHFETSLVQVRTVPVETRRIPLSELSVRPPRQEEFSSVEASMRLDAI 221
Query: 253 ASAGFKLSRSKLVNLIR 269
ASAGF++SR+K+ ++I+
Sbjct: 222 ASAGFRMSRTKIGDMIK 238
>gi|443328134|ref|ZP_21056736.1| photosystem II S4 domain protein [Xenococcus sp. PCC 7305]
gi|442792216|gb|ELS01701.1| photosystem II S4 domain protein [Xenococcus sp. PCC 7305]
Length = 259
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 103/204 (50%), Positives = 140/204 (68%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
+DLLKGV ++ EEV +++ A +A E++ +DFL+PPVL E KL D++ +A
Sbjct: 5 EDLLKGVENR---EEVARVIDKAEQAVRTWEIVLTDFLSPPVLFEVQRIFGKLTDIELLA 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL + E + I +AAL I GNF F +H DFLGSILGTGI REK
Sbjct: 62 WGGYPQAERQRLGLARLEMPLDNSHIELAALDIAGNFLFDTATHRDFLGSILGTGIVREK 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
+GDII+ GE+GAQ +VVPE+ ++L TSL +V +V+V +I L+ PP+ K T+E
Sbjct: 122 VGDIIVLGERGAQVIVVPEMVEFLTTSLTQVRSVAVKTRQIDFSELKIRPPKKKEMTTVE 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
ASLR+DA+ASAGF +SRSK+ N+I
Sbjct: 182 ASLRLDAIASAGFGMSRSKMANVI 205
>gi|302832532|ref|XP_002947830.1| hypothetical protein VOLCADRAFT_57892 [Volvox carteri f.
nagariensis]
gi|300266632|gb|EFJ50818.1| hypothetical protein VOLCADRAFT_57892 [Volvox carteri f.
nagariensis]
Length = 300
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/219 (47%), Positives = 141/219 (64%), Gaps = 6/219 (2%)
Query: 57 LIQAVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALE 116
L A+KG D D +V +LE+A RA+ R +V+ +DFL PP++ +SM AL
Sbjct: 29 LASALKGQGTDTALAWVDPANRRDVARVLEIAERAAQRWDVVWTDFLPPPIVADSMAALA 88
Query: 117 KLADVKAVAQGGYPQAERCRLSVGHPE---ALTSDP---DIVAALSITGNFGFQPCSHGD 170
D+ + GGY QAERCR+++G E L SDP D VAAL + GNF F P H D
Sbjct: 89 SRTDIVCLPWGGYAQAERCRIALGREELMEPLQSDPQQLDGVAALQVKGNFMFDPAKHPD 148
Query: 171 FLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLAL 230
FLG+ILGTG+ R+K+GDI++QGE GAQ LV PEL ++ SL +V V V RI L L
Sbjct: 149 FLGAILGTGVVRDKVGDILVQGEAGAQILVDPELVEHFEMSLVQVRTVPVEVRRIALSEL 208
Query: 231 EYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIR 269
PPR + ++EASLR+DA+ASAGF++SR+K+ +LI+
Sbjct: 209 SVRPPRQEEVSSVEASLRLDAIASAGFRMSRTKMGDLIK 247
>gi|67923764|ref|ZP_00517228.1| RNA-binding S4 [Crocosphaera watsonii WH 8501]
gi|67854391|gb|EAM49686.1| RNA-binding S4 [Crocosphaera watsonii WH 8501]
Length = 275
Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 102/204 (50%), Positives = 135/204 (66%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
+ LLKGV ++ E+ I++ A A EV+ SDF +PPV+ E +L D++ V
Sbjct: 21 ETLLKGVENRT---EITRIVDQAEIAVKTWEVVVSDFFSPPVIAEVENGFSRLTDIEIVV 77
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER R+ + PE P I +AAL I GNF F P SH DFLG+IL TGI REK
Sbjct: 78 WGGYPQAERRRIGIARPEIPLEQPQIPLAALDIAGNFLFDPASHRDFLGAILATGIVREK 137
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
IGDII+ GE+G Q +VVPEL ++L TSL +V +V V +I L L+ PP+TK T+E
Sbjct: 138 IGDIIVLGERGGQVIVVPELVEFLETSLTQVRSVPVKTQQIELSELKIRPPKTKEMTTVE 197
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
AS+R+DA+ASAGF +SRSK+ + I
Sbjct: 198 ASMRLDAIASAGFGMSRSKMSDAI 221
>gi|416399374|ref|ZP_11686955.1| RNA-binding S4 [Crocosphaera watsonii WH 0003]
gi|357262400|gb|EHJ11533.1| RNA-binding S4 [Crocosphaera watsonii WH 0003]
Length = 259
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 102/204 (50%), Positives = 135/204 (66%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
+ LLKGV ++ E+ I++ A A EV+ SDF +PPV+ E +L D++ V
Sbjct: 5 ETLLKGVENRT---EITRIVDQAEIAVKTWEVVVSDFFSPPVIAEVENGFSRLTDIEIVV 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER R+ + PE P I +AAL I GNF F P SH DFLG+IL TGI REK
Sbjct: 62 WGGYPQAERRRIGIARPEIPLEQPQIPLAALDIAGNFLFDPASHRDFLGAILATGIVREK 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
IGDII+ GE+G Q +VVPEL ++L TSL +V +V V +I L L+ PP+TK T+E
Sbjct: 122 IGDIIVLGERGGQVIVVPELVEFLETSLTQVRSVPVKTQQIELSELKIRPPKTKEMTTVE 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
AS+R+DA+ASAGF +SRSK+ + I
Sbjct: 182 ASMRLDAIASAGFGMSRSKMSDAI 205
>gi|428205885|ref|YP_007090238.1| photosystem II S4 domain-containing protein [Chroococcidiopsis
thermalis PCC 7203]
gi|428007806|gb|AFY86369.1| photosystem II S4 domain protein [Chroococcidiopsis thermalis PCC
7203]
Length = 259
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 102/204 (50%), Positives = 140/204 (68%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
+DLLKGV ++ AI ++++A +A EV+ +DFL+PP L ES +L DV+ VA
Sbjct: 5 EDLLKGVENREAI---VRVIDLAEQAIKTWEVVLTDFLSPPELAESQQIFSRLTDVQLVA 61
Query: 126 QGGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL++ E L S VAA+ I GNF F +H DFLG++LGTGI R+K
Sbjct: 62 WGGYPQAERQRLAIARAEVPLDSSQVTVAAIDIAGNFLFDTATHRDFLGAMLGTGIVRDK 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
GDII+ GE+GAQ +VVPEL ++L +L++V +V V +I L L + P+ K T+E
Sbjct: 122 TGDIIVLGERGAQAIVVPELVEFLAMNLKQVRSVPVKIQQIELSELRIKEPKKKELTTVE 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
ASLR+DA+ASAGF +SRSK+V+LI
Sbjct: 182 ASLRLDAIASAGFGMSRSKMVDLI 205
>gi|428220252|ref|YP_007104422.1| photosystem II S4 domain-containing protein [Synechococcus sp. PCC
7502]
gi|427993592|gb|AFY72287.1| photosystem II S4 domain protein [Synechococcus sp. PCC 7502]
Length = 258
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 103/204 (50%), Positives = 139/204 (68%), Gaps = 6/204 (2%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
DLL G+ + E + +L++ +A EV+ SDFL+P L E+ +K +VK V
Sbjct: 5 DLLTGLEHR---EVISRLLDLGDQALQTWEVVCSDFLSPSELIEAQQVFKKFTEVKFVIY 61
Query: 127 GGYPQAERCRLSVGHPEALTSDPDIV--AALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGY QAERCR+++ H + L +P++V AA+ I+GNF F P SH DFLG+ILGTGI R+K
Sbjct: 62 GGYAQAERCRMAIAHID-LPLEPEMVNLAAIDISGNFLFDPASHRDFLGAILGTGIERQK 120
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
+GD+IL GEKGAQ +VVPEL +YL SL +V V V I L L+ PP+TK T+E
Sbjct: 121 VGDLILLGEKGAQVIVVPELVEYLSVSLNQVRTVPVKVRSIELANLKIRPPQTKEIATVE 180
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
ASLR+DA+ASAGF +SRSK+V+ I
Sbjct: 181 ASLRLDAIASAGFGMSRSKMVDFI 204
>gi|172036251|ref|YP_001802752.1| putative RNA-binding S4 protein [Cyanothece sp. ATCC 51142]
gi|354553046|ref|ZP_08972353.1| photosystem II S4 domain protein [Cyanothece sp. ATCC 51472]
gi|171697705|gb|ACB50686.1| putative RNA-binding S4 protein [Cyanothece sp. ATCC 51142]
gi|353554876|gb|EHC24265.1| photosystem II S4 domain protein [Cyanothece sp. ATCC 51472]
Length = 259
Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 101/204 (49%), Positives = 136/204 (66%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
+ LLKG+ ++ EE+ I++ A A EV+ SDF +PPV E A +L +++ +
Sbjct: 5 EKLLKGIENR---EEMTRIIDQAEIAIKTWEVVVSDFFSPPVTAEVEKAFNQLTEIEIMV 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER R+ + PE I +AAL I GNF F P SH DFLG+IL TGI R+K
Sbjct: 62 WGGYPQAERRRIGITRPEIPLEQSQIPLAALDIAGNFLFDPASHRDFLGAILATGIVRDK 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
IGDII+ GE+G Q +VVPEL ++L TSL +V +V V RI L L+ PP+TK T+E
Sbjct: 122 IGDIIVLGERGGQVIVVPELVEFLETSLTQVRSVPVKTQRIELSELKIRPPKTKEMTTVE 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
AS+R+DA+ASAGF +SRSK+V+ I
Sbjct: 182 ASMRLDAIASAGFGMSRSKMVDAI 205
>gi|126654802|ref|ZP_01726336.1| RNA-binding S4 [Cyanothece sp. CCY0110]
gi|126623537|gb|EAZ94241.1| RNA-binding S4 [Cyanothece sp. CCY0110]
Length = 259
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 100/204 (49%), Positives = 136/204 (66%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
+ LLKG+ ++ EE+ I++ A A EV+ SDF +PPV+ E A +L +V+ +
Sbjct: 5 ETLLKGIENR---EEMTRIIDQAEMAIKTWEVVVSDFFSPPVVAEVENAFSQLTEVEIMV 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER R+ + PE I +AAL I GNF F P SH DFLG+IL TGI R+K
Sbjct: 62 WGGYPQAERRRIGITRPEIPLEQSQIPLAALDIAGNFLFDPASHRDFLGAILATGIVRDK 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
IGDII+ GE+G Q ++VPEL ++L TSL +V +V V I L L+ PP+TK T+E
Sbjct: 122 IGDIIVLGERGGQVIIVPELVEFLETSLTQVRSVPVKTQSIELSELKIRPPKTKEMTTVE 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
AS+R+DA+ASAGF +SRSK+V+ I
Sbjct: 182 ASMRLDAIASAGFGMSRSKMVDAI 205
>gi|428219626|ref|YP_007104091.1| photosystem II S4 domain-containing protein [Pseudanabaena sp. PCC
7367]
gi|427991408|gb|AFY71663.1| photosystem II S4 domain protein [Pseudanabaena sp. PCC 7367]
Length = 258
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 99/203 (48%), Positives = 140/203 (68%), Gaps = 4/203 (1%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
DLL G+ +K E + + + RA + EV+ SDFL+PP L E+ L+KL ++ AV+
Sbjct: 5 DLLDGLENK---EILSRLFDQGDRALNTWEVVCSDFLSPPELAEAHEVLKKLTEIHAVSW 61
Query: 127 GGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
GGYPQAERCRL++ + + ++ +AA+ + GNF F +H DFLG+ LG+GI R+K+
Sbjct: 62 GGYPQAERCRLALARVDLPLAPENVELAAIDVAGNFLFDAATHRDFLGACLGSGIERQKV 121
Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
GDII+ GE+GAQ +VVPEL +YL +L +V V+V I L L+ PPRTK T+EA
Sbjct: 122 GDIIVIGERGAQIIVVPELVEYLTMNLTQVRTVTVKTQPIELSELKIRPPRTKEMTTVEA 181
Query: 246 SLRVDALASAGFKLSRSKLVNLI 268
SLR+DA+ASAGF +SRSK+V+LI
Sbjct: 182 SLRLDAIASAGFGMSRSKMVDLI 204
>gi|434391054|ref|YP_007126001.1| photosystem II S4 domain protein [Gloeocapsa sp. PCC 7428]
gi|428262895|gb|AFZ28841.1| photosystem II S4 domain protein [Gloeocapsa sp. PCC 7428]
Length = 259
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 98/204 (48%), Positives = 140/204 (68%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++++I +++ A++A EV+ +DFL+PP L E+ +L +V+ +A
Sbjct: 5 EELLKGVENRDSI---ARVIDQAQQAIKTWEVVLTDFLSPPELAETQQVFSRLTEVQTIA 61
Query: 126 QGGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL++ PE L VAAL I+GNF F +H DFLG++LGTGI REK
Sbjct: 62 WGGYPQAERQRLAIARPEIPLDLSHVAVAALDISGNFLFDTATHRDFLGAMLGTGIVREK 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
GDII+ GE+GAQ +VVPEL ++L +L++V +V V RI L L+ P+ K T+E
Sbjct: 122 TGDIIVLGERGAQAIVVPELVEFLEMNLQQVRSVPVKIQRIELSELKIREPKKKDLTTVE 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
ASLR+DA+ASAGF SRSK+ ++I
Sbjct: 182 ASLRLDAIASAGFGTSRSKMADMI 205
>gi|434397141|ref|YP_007131145.1| photosystem II S4 domain protein [Stanieria cyanosphaera PCC 7437]
gi|428268238|gb|AFZ34179.1| photosystem II S4 domain protein [Stanieria cyanosphaera PCC 7437]
Length = 259
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 99/204 (48%), Positives = 137/204 (67%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LL GV ++ EEV I++ A +A EV+ +DFL+P VL E+ KL +V+ VA
Sbjct: 5 EELLAGVENR---EEVARIIDQAEQAIKTWEVVLTDFLSPRVLIETQAIFSKLTEVEIVA 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL + + I + AL I GNF F P +H DFLG+ILGTGI R+K
Sbjct: 62 WGGYPQAERQRLGIARQDIPIDQSQIDLVALDIAGNFLFDPATHRDFLGAILGTGIVRDK 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
+GDI++ GE+GAQ +VVPE+ ++L TSL +V +V V RI L L+ PP+ K T+E
Sbjct: 122 VGDILVLGERGAQVIVVPEMVEFLETSLTQVRSVPVKTQRIDLSELKVRPPQKKEMTTVE 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
AS+R+DA+ASAGF +SRSK+ + I
Sbjct: 182 ASMRLDAIASAGFGMSRSKMADAI 205
>gi|428203950|ref|YP_007082539.1| photosystem II S4 domain-containing protein [Pleurocapsa sp. PCC
7327]
gi|427981382|gb|AFY78982.1| photosystem II S4 domain protein [Pleurocapsa sp. PCC 7327]
Length = 259
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 99/204 (48%), Positives = 139/204 (68%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++ EE+ I++ A +A EV +DFL+PPVL E+ +L +++ +A
Sbjct: 5 EELLKGVENR---EEIARIVDKAEQALRTWEVALTDFLSPPVLAEAQQIFGRLTEIEYIA 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER R+ + + I + AL I GNF F P +H DFLG+ILGTGI R+K
Sbjct: 62 WGGYPQAERQRIGMARSDIPLDLSQIQITALDIAGNFLFDPANHRDFLGAILGTGIVRDK 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
+GDII+ GE+GAQ LVVPE+A++L TSL +V +V V RI L L+ PP+ K T+E
Sbjct: 122 VGDIIVLGERGAQVLVVPEIAEFLETSLVQVRSVPVKTQRIDLSELKVCPPQKKEITTVE 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
AS+R+DA+ASAGF +SRSK+ + I
Sbjct: 182 ASMRLDAIASAGFGMSRSKMADAI 205
>gi|443646827|ref|ZP_21129505.1| photosystem II S4 domain protein [Microcystis aeruginosa
DIANCHI905]
gi|159028854|emb|CAO90659.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443335656|gb|ELS50120.1| photosystem II S4 domain protein [Microcystis aeruginosa
DIANCHI905]
Length = 259
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 100/204 (49%), Positives = 137/204 (67%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++ EE+ +++ A +A EV +DFL+P VL E ++L DV
Sbjct: 5 EELLKGVENR---EEIAKVIDKAEQAIKTWEVTTTDFLSPAVLAEVERFFQRLTDVSMEK 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL + + + DI ++AL I GNF F +H DFLG++LGTGI REK
Sbjct: 62 WGGYPQAERQRLGIARVDLPLTVTDIPLSALDIAGNFLFDTANHRDFLGAMLGTGIVREK 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
+GDII+ GE+GAQ +VVPELAD+L +L +V +V V + IPL AL+ PP+ K T+E
Sbjct: 122 VGDIIVLGERGAQAIVVPELADFLSANLRQVRSVPVKTSLIPLTALKVRPPQKKEINTVE 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
ASLR+DA+ASAGF +SRSK+ I
Sbjct: 182 ASLRLDAIASAGFGISRSKMAEAI 205
>gi|218247630|ref|YP_002373001.1| photosystem II S4 domain-containing protein [Cyanothece sp. PCC
8801]
gi|257061035|ref|YP_003138923.1| photosystem II S4 domain-containing protein [Cyanothece sp. PCC
8802]
gi|218168108|gb|ACK66845.1| photosystem II S4 domain protein [Cyanothece sp. PCC 8801]
gi|256591201|gb|ACV02088.1| photosystem II S4 domain protein [Cyanothece sp. PCC 8802]
Length = 259
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 100/204 (49%), Positives = 136/204 (66%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
+ LLKG+ ++ EE+ I+++A A EV SDFL+PPV+ E + L +++ +
Sbjct: 5 EQLLKGIENR---EEIARIIDLAEIALKTWEVAISDFLSPPVIAEVQRLFKGLTELEMLP 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER R+ + E P I +AAL I GNF F P +H DFLG+ILGTGI REK
Sbjct: 62 WGGYPQAERQRVGIVRAEIPLETPQITLAALDIAGNFLFDPATHRDFLGAILGTGIVREK 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
IGDII+ GE+GAQ +VVPE+ ++L TSL +V +V V I L L+ PP+TK T+E
Sbjct: 122 IGDIIVLGERGAQVIVVPEMVNFLETSLVQVRSVPVKVQLIDLSELKIRPPKTKEMNTVE 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
AS+R+DA+ASAGF +SRSK+ I
Sbjct: 182 ASMRLDAIASAGFGISRSKMAEAI 205
>gi|425448148|ref|ZP_18828127.1| RNA-binding S4 [Microcystis aeruginosa PCC 9443]
gi|389731129|emb|CCI04764.1| RNA-binding S4 [Microcystis aeruginosa PCC 9443]
Length = 259
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/206 (49%), Positives = 137/206 (66%), Gaps = 8/206 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++ EE+ +++ A +A EV +DFL+P VL E ++L DV
Sbjct: 5 EELLKGVENR---EEIAKVIDKAEQAIKTWEVTVTDFLSPAVLAEVERVFQRLTDVSMEK 61
Query: 126 QGGYPQAERCRLSVGH---PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAR 182
GGYPQAER RL + P A+T P ++AL I GNF F +H DFLG++LGTGI R
Sbjct: 62 WGGYPQAERQRLGIARVDLPLAVTDIP--LSALDIAGNFLFDTANHRDFLGAMLGTGIVR 119
Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 242
EK+GDII+ GE+GAQ +VVPELAD+L +L +V +V V + IPL L+ PP+ K T
Sbjct: 120 EKVGDIIVLGERGAQAIVVPELADFLSANLRQVRSVPVKTSLIPLTELKVRPPQKKEINT 179
Query: 243 IEASLRVDALASAGFKLSRSKLVNLI 268
+EASLR+DA+ASAGF +SRSK+ I
Sbjct: 180 VEASLRLDAIASAGFGISRSKMAEAI 205
>gi|425469652|ref|ZP_18848571.1| RNA-binding S4 [Microcystis aeruginosa PCC 9701]
gi|389880482|emb|CCI38776.1| RNA-binding S4 [Microcystis aeruginosa PCC 9701]
Length = 259
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 99/204 (48%), Positives = 137/204 (67%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++ EE+ +++ A +A EV +DFL+P VL E ++L DV
Sbjct: 5 EELLKGVENR---EEIAKVIDKAEQAIKTWEVTTTDFLSPAVLAEVERVFQRLTDVSMQK 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL + + ++ DI ++AL I GNF F +H DFLG++LGTGI REK
Sbjct: 62 WGGYPQAERQRLGIARVDLPLAETDIPLSALDIAGNFLFDTANHRDFLGAMLGTGIVREK 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
+GDII+ GE+GAQ +VVPELAD+L +L +V +V V + IPL L+ PP+ K T+E
Sbjct: 122 VGDIIVLGERGAQAIVVPELADFLCANLLQVRSVPVKTSPIPLTELKVRPPQKKEINTVE 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
ASLR+DA+ASAGF +SRSK+ I
Sbjct: 182 ASLRLDAIASAGFGISRSKMAEAI 205
>gi|425434483|ref|ZP_18814952.1| Similar to tr|Q8YT36|Q8YT36 [Microcystis aeruginosa PCC 9432]
gi|389676027|emb|CCH94899.1| Similar to tr|Q8YT36|Q8YT36 [Microcystis aeruginosa PCC 9432]
Length = 259
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 99/204 (48%), Positives = 136/204 (66%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++ EE+ +++ A +A EV +DFL+P VL E ++L DV
Sbjct: 5 EELLKGVENR---EEIAKVIDKAEQAIKTWEVTTTDFLSPAVLAEVERVFQRLTDVSMQK 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL + + + DI ++AL I GNF F +H DFLG++LGTGI REK
Sbjct: 62 WGGYPQAERQRLGIARVDLPLTVTDIPLSALDIAGNFLFDTANHRDFLGAMLGTGIVREK 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
+GDII+ GE+GAQ +VVPELAD+L +L +V +V V + IPL L+ PP+ K T+E
Sbjct: 122 VGDIIVLGERGAQAIVVPELADFLSANLRQVRSVPVKTSLIPLTELKVRPPQKKEINTVE 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
ASLR+DA+ASAGF +SRSK+ I
Sbjct: 182 ASLRLDAIASAGFGISRSKMAEAI 205
>gi|425457020|ref|ZP_18836726.1| Similar to tr|Q8YT36|Q8YT36 [Microcystis aeruginosa PCC 9807]
gi|389801734|emb|CCI19139.1| Similar to tr|Q8YT36|Q8YT36 [Microcystis aeruginosa PCC 9807]
Length = 259
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 99/204 (48%), Positives = 136/204 (66%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++ EE+ +++ A +A EV +DFL+P VL E ++L DV
Sbjct: 5 EELLKGVENR---EEIAKVIDKAEQAIKTWEVTTTDFLSPAVLAEVERVFQRLTDVSMEK 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL + + + DI ++AL I GNF F +H DFLG++LGTGI REK
Sbjct: 62 WGGYPQAERQRLGIARVDLPLTVTDIPLSALDIAGNFLFDTANHRDFLGAMLGTGIVREK 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
+GDII+ GE+GAQ +VVPELAD+L +L +V +V V + IPL L+ PP+ K T+E
Sbjct: 122 VGDIIVLGERGAQAIVVPELADFLSANLRQVRSVPVKTSLIPLTELKVRPPQKKEINTVE 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
ASLR+DA+ASAGF +SRSK+ I
Sbjct: 182 ASLRLDAIASAGFGISRSKMAEAI 205
>gi|425450199|ref|ZP_18830031.1| RNA-binding S4 [Microcystis aeruginosa PCC 7941]
gi|389769055|emb|CCI05983.1| RNA-binding S4 [Microcystis aeruginosa PCC 7941]
Length = 259
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 99/204 (48%), Positives = 136/204 (66%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++ EE+ +++ A +A EV +DFL+P VL E ++L DV
Sbjct: 5 EELLKGVENR---EEIAKVIDKAEQAIKTWEVTTTDFLSPAVLAEVERVFQRLTDVSMQK 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL + + + DI ++AL I GNF F +H DFLG++LGTGI REK
Sbjct: 62 WGGYPQAERQRLGIARVDLPLTVTDIPLSALDIAGNFLFDTANHRDFLGAMLGTGIVREK 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
+GDII+ GE+GAQ +VVPELAD+L +L +V +V V + IPL L+ PP+ K T+E
Sbjct: 122 VGDIIVLGERGAQAIVVPELADFLSANLRQVRSVPVKTSPIPLTELKVRPPQKKEINTVE 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
ASLR+DA+ASAGF +SRSK+ I
Sbjct: 182 ASLRLDAIASAGFGISRSKMAEAI 205
>gi|218441671|ref|YP_002380000.1| photosystem II S4 domain-containing protein [Cyanothece sp. PCC
7424]
gi|218174399|gb|ACK73132.1| photosystem II S4 domain protein [Cyanothece sp. PCC 7424]
Length = 259
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 98/204 (48%), Positives = 135/204 (66%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
+DLLKGV ++ EE+ IL+ A +A E+ +DF +PPVL E ++L +V+ +
Sbjct: 5 EDLLKGVENR---EEIARILDKAEQAIRTWEITLTDFFSPPVLAEVQQIFKRLTEVQLIT 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER R+ + E I +AA+ I GNF F P +H DFLG++LGTGI R+K
Sbjct: 62 WGGYPQAERQRIGLSRSEIPLDISQIELAAVDIAGNFLFDPANHRDFLGAMLGTGIVRDK 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
+GDII+ GE+GAQ +VVPEL D+L TSL +V +V V I L L+ PP+ K T+E
Sbjct: 122 VGDIIVLGERGAQAIVVPELVDFLQTSLVQVRSVPVKTQPIELTDLKIRPPKKKEMTTVE 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
AS+R+DA+ASAGF +SRSK+ I
Sbjct: 182 ASMRLDAIASAGFGMSRSKMAEAI 205
>gi|425460161|ref|ZP_18839643.1| RNA-binding S4 [Microcystis aeruginosa PCC 9808]
gi|389827156|emb|CCI21733.1| RNA-binding S4 [Microcystis aeruginosa PCC 9808]
Length = 259
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 99/204 (48%), Positives = 136/204 (66%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++ EE+ +++ A +A EV +DFL+P VL E ++L DV
Sbjct: 5 EELLKGVENR---EEIAKVIDKAEQAIKTWEVTTTDFLSPAVLAEVERVFQRLTDVSMQK 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL + + + DI ++AL I GNF F +H DFLG++LGTGI REK
Sbjct: 62 WGGYPQAERQRLGIARVDLPLTVTDIPLSALDIAGNFLFDTANHRDFLGAMLGTGIVREK 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
+GDII+ GE+GAQ +VVPELAD+L +L +V +V V + IPL L+ PP+ K T+E
Sbjct: 122 VGDIIVLGERGAQAIVVPELADFLSANLRQVRSVPVKTSPIPLTELKVRPPQKKEINTVE 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
ASLR+DA+ASAGF +SRSK+ I
Sbjct: 182 ASLRLDAIASAGFGISRSKMAEAI 205
>gi|440682854|ref|YP_007157649.1| photosystem II S4 domain protein [Anabaena cylindrica PCC 7122]
gi|428679973|gb|AFZ58739.1| photosystem II S4 domain protein [Anabaena cylindrica PCC 7122]
Length = 259
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 97/204 (47%), Positives = 137/204 (67%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLK V ++++I +++ A +A EV+++DFL+PP L E +L +V VA
Sbjct: 5 EELLKSVENRDSI---ARVIDQAEQAIKTWEVVYTDFLSPPELAEIQRVFSRLTEVHLVA 61
Query: 126 QGGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER R+++ E L +AAL I GNF F +H DFLG++LGTGI REK
Sbjct: 62 WGGYPQAERQRIAIARSELPLDQSQVAIAALEIAGNFLFDTANHRDFLGAMLGTGIVREK 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
GDII+ GE+GAQ +VVPEL ++L SL++V +V V RI + L+ P+ K T+E
Sbjct: 122 TGDIIVLGERGAQVIVVPELTEFLEMSLQQVRSVPVKTQRIDINELKIREPKKKELTTVE 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
ASLR+DA+ASAGF +SRSK+V+LI
Sbjct: 182 ASLRLDAIASAGFGMSRSKMVDLI 205
>gi|422301480|ref|ZP_16388848.1| RNA-binding S4 [Microcystis aeruginosa PCC 9806]
gi|389789624|emb|CCI14403.1| RNA-binding S4 [Microcystis aeruginosa PCC 9806]
Length = 259
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 99/204 (48%), Positives = 137/204 (67%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++ EE+ +++ A +A EV +DFL+P VL E ++L DV
Sbjct: 5 EELLKGVENR---EEIAKVIDKAEQAIKTWEVTVTDFLSPAVLAEVERVFQRLTDVSMQK 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL + + ++ DI ++AL I GNF F +H DFLG++LGTGI REK
Sbjct: 62 WGGYPQAERQRLGISRVDLPLAETDIPLSALDIAGNFLFDTANHRDFLGAMLGTGIVREK 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
+GDII+ GE+GAQ +VVPELAD+L +L +V +V V + IPL L+ PP+ K T+E
Sbjct: 122 VGDIIVLGERGAQAIVVPELADFLCANLLQVRSVPVKTSPIPLTELKVRPPQKKEINTVE 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
ASLR+DA+ASAGF +SRSK+ I
Sbjct: 182 ASLRLDAIASAGFGISRSKMAEAI 205
>gi|427736647|ref|YP_007056191.1| photosystem II S4 domain-containing protein [Rivularia sp. PCC
7116]
gi|427371688|gb|AFY55644.1| photosystem II S4 domain protein [Rivularia sp. PCC 7116]
Length = 259
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 97/204 (47%), Positives = 137/204 (67%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLK V +++ V +++ A +A EV+ +DFL+PP L E+ KL +V+ +A
Sbjct: 5 EELLKNVENRDT---VARVIDCAEQAIRTWEVVFTDFLSPPELAEAQQGFSKLTEVELLA 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER R+++ E + + + AL+I GNF F +H DFLG++LGTGI REK
Sbjct: 62 WGGYPQAERKRIAIARNELPLDESQVELVALNIAGNFLFDTATHRDFLGAMLGTGIVREK 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
GDII+ GE+GAQ +VVPELAD+L TSL +V +V V RI L+ P+ K T+E
Sbjct: 122 TGDIIVLGERGAQVIVVPELADFLETSLTQVRSVPVKTQRIDFGELKIREPKKKELTTVE 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
ASLR+DA+ASAGF +SRSK+V+ I
Sbjct: 182 ASLRLDAIASAGFGMSRSKMVDFI 205
>gi|334119785|ref|ZP_08493869.1| photosystem II S4 domain protein [Microcoleus vaginatus FGP-2]
gi|333457426|gb|EGK86049.1| photosystem II S4 domain protein [Microcoleus vaginatus FGP-2]
Length = 261
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 94/204 (46%), Positives = 137/204 (67%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKG+ +++ V L+ A +A EV +DFL+PP L +++ ++L DV+ VA
Sbjct: 7 EELLKGIENRDC---VARALDQAEQAIKTWEVTQTDFLSPPELADTLTVFKRLTDVELVA 63
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER R+++ + + VAA+ I GNF F SH DFLG++LGTGI REK
Sbjct: 64 WGGYPQAERQRIAIARSDIPIDSASVNVAAVEIAGNFLFDTASHRDFLGAMLGTGIVREK 123
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
GD+I+ GE+GAQ +V+PE+ +YL SL++V +V V RI L L+ P+ K T+E
Sbjct: 124 TGDVIVLGERGAQAIVMPEMVEYLEMSLQQVRSVPVQTRRIELSELKIREPKKKEMTTVE 183
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
AS+R+DA+ASAGF +SRSK+ +LI
Sbjct: 184 ASMRLDAVASAGFAMSRSKMADLI 207
>gi|428300093|ref|YP_007138399.1| photosystem II S4 domain-containing protein [Calothrix sp. PCC
6303]
gi|428236637|gb|AFZ02427.1| photosystem II S4 domain protein [Calothrix sp. PCC 6303]
Length = 259
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 95/204 (46%), Positives = 138/204 (67%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++++ V +++ A +A E++ +DFL+PP L E+ A +L +V VA
Sbjct: 5 EELLKGVENRDS---VARVIDHAEQAIKTWEIVFTDFLSPPELAEAQRAFNRLTEVHLVA 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER R+++ + + +A L + GNF F +H DFLGS+LGTGI REK
Sbjct: 62 WGGYPQAERQRIAIARSDLPLEQAQVEIAVLDVAGNFLFDTATHRDFLGSMLGTGIVREK 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
GDII+ GE+GAQ +VVPEL ++L SL++V +V V RI + L+ P+ K T+E
Sbjct: 122 TGDIIVLGERGAQVIVVPELVEFLEMSLQQVRSVPVKTRRIDISELKIREPKKKEMTTVE 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
ASLR+DA+ASAGF +SRSK+V+LI
Sbjct: 182 ASLRLDAIASAGFGMSRSKMVDLI 205
>gi|440752557|ref|ZP_20931760.1| photosystem II S4 domain protein [Microcystis aeruginosa TAIHU98]
gi|440177050|gb|ELP56323.1| photosystem II S4 domain protein [Microcystis aeruginosa TAIHU98]
Length = 259
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 99/204 (48%), Positives = 136/204 (66%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++ EE+ +++ A +A EV +DFL+P VL E ++L DV
Sbjct: 5 EELLKGVENR---EEIAKVIDKAEQAIKTWEVTTTDFLSPAVLAEVERVFQRLTDVSMQK 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL + + + DI ++AL I GNF F +H DFLG++LGTGI REK
Sbjct: 62 WGGYPQAERQRLGIARVDLPLTVTDIPLSALDIAGNFLFDTANHRDFLGAMLGTGIVREK 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
+GDII+ GE+GAQ +VVPELAD+L +L +V +V V + IPL L+ PP+ K T+E
Sbjct: 122 VGDIIVLGERGAQAIVVPELADFLSANLLQVRSVPVKTSLIPLTELKVRPPQKKEINTVE 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
ASLR+DA+ASAGF +SRSK+ I
Sbjct: 182 ASLRLDAIASAGFGISRSKMAEAI 205
>gi|428319799|ref|YP_007117681.1| photosystem II S4 domain protein [Oscillatoria nigro-viridis PCC
7112]
gi|428243479|gb|AFZ09265.1| photosystem II S4 domain protein [Oscillatoria nigro-viridis PCC
7112]
Length = 259
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 94/204 (46%), Positives = 137/204 (67%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKG+ ++ E V L+ A +A EV +DFL+PP L +++ ++L DV+ VA
Sbjct: 5 EELLKGIENR---ECVARALDQAEQAIKTWEVTQTDFLSPPELADTLTVFKRLTDVELVA 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER R+++ + + +AA+ I GNF F SH DFLG++LGTGI REK
Sbjct: 62 WGGYPQAERQRIAIARSDIPIDSASVSIAAVEIAGNFLFDTASHRDFLGAMLGTGIVREK 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
GD+I+ GE+GAQ +V+PE+ +YL SL++V +V V RI L L+ P+ K T+E
Sbjct: 122 TGDVIVLGERGAQAIVMPEMVEYLEMSLQQVRSVPVKTQRIELSELKIREPKKKEMTTVE 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
AS+R+DA+ASAGF +SRSK+ +LI
Sbjct: 182 ASMRLDAVASAGFAMSRSKMADLI 205
>gi|166365176|ref|YP_001657449.1| RNA-binding protein S4 [Microcystis aeruginosa NIES-843]
gi|425465358|ref|ZP_18844667.1| RNA-binding S4 [Microcystis aeruginosa PCC 9809]
gi|166087549|dbj|BAG02257.1| RNA-binding S4 [Microcystis aeruginosa NIES-843]
gi|389832398|emb|CCI23996.1| RNA-binding S4 [Microcystis aeruginosa PCC 9809]
Length = 259
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 99/204 (48%), Positives = 136/204 (66%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++ EE+ +++ A +A EV +DFL+P VL E ++L DV
Sbjct: 5 EELLKGVENR---EEIAKVIDKAEQAIKTWEVTVTDFLSPAVLAEVERVFQRLTDVSMQK 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL + + + DI ++AL I GNF F +H DFLG++LGTGI REK
Sbjct: 62 WGGYPQAERQRLGIARVDLPLTVTDIPLSALDIAGNFLFDTANHRDFLGAMLGTGIVREK 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
+GDII+ GE+GAQ +VVPELAD+L +L +V +V V + IPL L+ PP+ K T+E
Sbjct: 122 VGDIIVLGERGAQAIVVPELADFLSANLLQVRSVPVKTSPIPLTELKVRPPQKKEINTVE 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
ASLR+DA+ASAGF +SRSK+ I
Sbjct: 182 ASLRLDAIASAGFGISRSKMAEAI 205
>gi|427730945|ref|YP_007077182.1| photosystem II S4 domain-containing protein [Nostoc sp. PCC 7524]
gi|427366864|gb|AFY49585.1| photosystem II S4 domain protein [Nostoc sp. PCC 7524]
Length = 259
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 95/204 (46%), Positives = 138/204 (67%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++++I +++ A +A EV+ +DFL+PP L E +L +++ VA
Sbjct: 5 EELLKGVENRDSI---ARVIDQAEQAIKTWEVVLTDFLSPPELAEIQRVFSRLTELQLVA 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER R+++ E + + L I GNF F P +H DFLG++LGTGI REK
Sbjct: 62 WGGYPQAERQRVAIARSELPLDQSQVNLVLLEIAGNFLFDPATHRDFLGAMLGTGIVREK 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
GDII+ GE+GAQ +VVPELA++L +L++V +V V +I L L+ P+ K T+E
Sbjct: 122 TGDIIVLGERGAQAIVVPELAEFLTMNLQQVRSVPVKTQQIDLSELKVREPKKKELTTVE 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
ASLR+DA+ASAGF +SRSK+V+LI
Sbjct: 182 ASLRLDAIASAGFGMSRSKMVDLI 205
>gi|414078898|ref|YP_006998216.1| photosystem II S4 domain-containing protein [Anabaena sp. 90]
gi|413972314|gb|AFW96403.1| photosystem II S4 domain protein [Anabaena sp. 90]
Length = 259
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 95/204 (46%), Positives = 137/204 (67%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV +++ V +++ A +A EV+ +DFL+PP L E +L +V +VA
Sbjct: 5 EELLKGVENRDT---VARVIDQADQAIKTWEVVFTDFLSPPELAEIQRVFSRLTEVHSVA 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL++ + ++ + AL I GNF F +H DFLG++LGTGI REK
Sbjct: 62 WGGYPQAERQRLAIARADLPLDQSEVAIVALDIAGNFLFDTANHRDFLGAMLGTGIVREK 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
GD+I+ GE+GAQ +VVPEL ++L SL++V +V V RI + L+ P+ K T+E
Sbjct: 122 TGDVIVLGERGAQVIVVPELVEFLEMSLQQVRSVPVKTRRIEINELKIREPKKKEMTTVE 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
ASLR+DA+ASAGF +SRSK+V+LI
Sbjct: 182 ASLRLDAVASAGFGMSRSKMVDLI 205
>gi|119513374|ref|ZP_01632408.1| hypothetical protein N9414_12918 [Nodularia spumigena CCY9414]
gi|119461983|gb|EAW42986.1| hypothetical protein N9414_12918 [Nodularia spumigena CCY9414]
Length = 259
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 99/205 (48%), Positives = 137/205 (66%), Gaps = 6/205 (2%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++++ V +++ A +A EV+ +DFL+PP L E +L DV+ VA
Sbjct: 5 EELLKGVENRDS---VARVIDQAEQAIKTWEVVLTDFLSPPELAEINRVFSRLTDVQLVA 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDIV--AALSITGNFGFQPCSHGDFLGSILGTGIARE 183
GGYPQAER R+++ E L +P V AL GNF F SH DFLG++LGTGI RE
Sbjct: 62 WGGYPQAERQRMAIARSE-LPLEPSQVDLVALEFAGNFLFDTASHRDFLGAMLGTGIVRE 120
Query: 184 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTI 243
K GDI++ GE+GAQ +V PELA++L SL++V +V V RI + L+ P+ K T+
Sbjct: 121 KTGDILVLGERGAQAIVAPELAEFLEMSLQQVRSVPVKTQRIDINELKVREPKKKELTTV 180
Query: 244 EASLRVDALASAGFKLSRSKLVNLI 268
EASLR+DA+ASAGF +SRSK+VN I
Sbjct: 181 EASLRLDAIASAGFGMSRSKMVNYI 205
>gi|390441638|ref|ZP_10229680.1| RNA-binding S4 [Microcystis sp. T1-4]
gi|389835056|emb|CCI33806.1| RNA-binding S4 [Microcystis sp. T1-4]
Length = 259
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/206 (48%), Positives = 137/206 (66%), Gaps = 8/206 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++ E++ +++ A +A EV +DFL+P VL E ++L DV
Sbjct: 5 EELLKGVENR---EDIAKVIDKAEQAIKTWEVTVTDFLSPAVLAEVERVFQRLTDVSMQK 61
Query: 126 QGGYPQAERCRLSVGH---PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAR 182
GGYPQAER RL + P A+T P ++AL I GNF F +H DFLG++LGTGI R
Sbjct: 62 WGGYPQAERQRLGIARVDLPLAVTDIP--LSALDIAGNFLFDTANHRDFLGAMLGTGIVR 119
Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 242
EK+GDII+ GE+GAQ +VVPELAD+L +L +V +V V + IPL L+ PP+ K T
Sbjct: 120 EKVGDIIVLGERGAQAIVVPELADFLSANLLQVRSVPVKTSPIPLTELKVRPPQKKEINT 179
Query: 243 IEASLRVDALASAGFKLSRSKLVNLI 268
+EASLR+DA+ASAGF +SRSK+ I
Sbjct: 180 VEASLRLDAIASAGFGISRSKMAEAI 205
>gi|300866534|ref|ZP_07111224.1| RNA-binding S4 [Oscillatoria sp. PCC 6506]
gi|300335491|emb|CBN56384.1| RNA-binding S4 [Oscillatoria sp. PCC 6506]
Length = 259
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 98/204 (48%), Positives = 137/204 (67%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKG+ ++ E V ++ A +A E+ +DFL+PP L E+ +L +V+ +A
Sbjct: 5 EELLKGIENR---ECVARAIDQAEQALKTWEISLTDFLSPPELAETQKVFSRLTEVQLIA 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL++ E + + VAAL I GNF F SH DFLGSILG+GI REK
Sbjct: 62 WGGYPQAERQRLAIARSELPLDNSSVSVAALEIAGNFLFDTASHRDFLGSILGSGIVREK 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
GDII+ GE+G+Q +VVPEL +YL L++V +V V RI L L+ + P+ K T+E
Sbjct: 122 TGDIIVLGERGSQAIVVPELVEYLEMHLKQVRSVPVQIQRIELSELKIKEPKKKELTTVE 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
AS+R+DA+ASAGF +SRSK+V+LI
Sbjct: 182 ASMRLDAIASAGFGMSRSKMVDLI 205
>gi|425440202|ref|ZP_18820510.1| RNA-binding S4 [Microcystis aeruginosa PCC 9717]
gi|389719422|emb|CCH96747.1| RNA-binding S4 [Microcystis aeruginosa PCC 9717]
Length = 259
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 99/206 (48%), Positives = 136/206 (66%), Gaps = 8/206 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++ EE+ +++ A +A E+ +DFL+P VL E ++L DV
Sbjct: 5 EELLKGVENR---EEIAKVIDKAEQAIKTWEMTVTDFLSPAVLAEVERVFQRLTDVSMQK 61
Query: 126 QGGYPQAERCRLSVGH---PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAR 182
GGYPQAER RL + P +T P ++AL I GNF F +H DFLG++LGTGI R
Sbjct: 62 WGGYPQAERQRLGIARVDLPWTVTDIP--LSALDIAGNFLFDTANHRDFLGAMLGTGIVR 119
Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 242
EK+GDII+ GE+GAQ +VVPELAD+L +L +V +V V + IPL L+ PP+ K T
Sbjct: 120 EKVGDIIVLGERGAQAIVVPELADFLCANLLQVRSVPVKTSPIPLTELKVRPPQKKEINT 179
Query: 243 IEASLRVDALASAGFKLSRSKLVNLI 268
+EASLR+DA+ASAGF +SRSK+ I
Sbjct: 180 VEASLRLDAIASAGFGISRSKMAEAI 205
>gi|307152717|ref|YP_003888101.1| photosystem II S4 domain-containing protein [Cyanothece sp. PCC
7822]
gi|306982945|gb|ADN14826.1| photosystem II S4 domain protein [Cyanothece sp. PCC 7822]
Length = 259
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 98/204 (48%), Positives = 134/204 (65%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++ EE+ I++ A A EV +DFL+PPVL E ++L +V +
Sbjct: 5 EELLKGVENR---EEIARIIDKAETAMRTWEVTLTDFLSPPVLAEVQRIFQRLTEVDLIP 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL + E + VAA+ I GNF F +H DFLG++LGTG+ REK
Sbjct: 62 WGGYPQAERQRLGISRSEVPFDLSGVAVAAVDIAGNFLFDAANHRDFLGAMLGTGLVREK 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
+GDII+ GE+GAQ +VVPEL ++L TSL +V +V V RI L L+ PP+ K T+E
Sbjct: 122 VGDIIVLGERGAQAIVVPELVEFLETSLVQVRSVPVKTERIELTDLKVRPPQKKEMTTVE 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
AS+R+DA+ASAGF +SRSK+ I
Sbjct: 182 ASMRLDAIASAGFGMSRSKMAEAI 205
>gi|434405253|ref|YP_007148138.1| photosystem II S4 domain protein [Cylindrospermum stagnale PCC
7417]
gi|428259508|gb|AFZ25458.1| photosystem II S4 domain protein [Cylindrospermum stagnale PCC
7417]
Length = 259
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 98/205 (47%), Positives = 135/205 (65%), Gaps = 6/205 (2%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV +++ V +++ A +A EV+ +DFL+PP L E +L DV+ VA
Sbjct: 5 EELLKGVENRDT---VARVIDQAEQAIKTWEVVVTDFLSPPELAEVQRVFSRLTDVQLVA 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDIVA--ALSITGNFGFQPCSHGDFLGSILGTGIARE 183
GGYPQAER R+++ E L D VA L I GNF F +H DFLG++LGTGI RE
Sbjct: 62 WGGYPQAERQRIAIARSE-LPLDQSQVALVVLEIAGNFLFDTATHRDFLGAMLGTGIIRE 120
Query: 184 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTI 243
K GD+I+ GE+GAQ +V PELA++L SL++V +V V RI L+ P+ K T+
Sbjct: 121 KTGDVIVLGERGAQTIVAPELAEFLEMSLQQVRSVPVKTRRIDFSELKVREPKKKELTTV 180
Query: 244 EASLRVDALASAGFKLSRSKLVNLI 268
EASLR+DA+ASAGF +SRSK+V+ I
Sbjct: 181 EASLRLDAIASAGFAMSRSKMVDFI 205
>gi|427723367|ref|YP_007070644.1| photosystem II S4 domain-containing protein [Leptolyngbya sp. PCC
7376]
gi|427355087|gb|AFY37810.1| photosystem II S4 domain protein [Leptolyngbya sp. PCC 7376]
Length = 260
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 96/204 (47%), Positives = 138/204 (67%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
DDLLKG ++ EE+ IL+ A +A +++ +DFL+PPVL E+ L +L + +
Sbjct: 6 DDLLKGAENR---EELSRILDQADQAFRTWDIVQTDFLSPPVLYEATAILGRLTEFSFIK 62
Query: 126 QGGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL++ E L ++ +AA+ I+GNF F +H DFLGS+LGTG+ REK
Sbjct: 63 GGGYPQAERQRLAIARNEIPLEAEHIEIAAIDISGNFLFDTATHRDFLGSLLGTGLVREK 122
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
+GDI++ G++GAQ LV+PEL +L TSL +V +V V IP+ L+ PP+ K T+E
Sbjct: 123 VGDILVLGDRGAQALVIPELVSFLETSLVQVRSVPVKTRPIPIEELKVRPPKKKELTTVE 182
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
ASLR+DA+ASAG +SRSK+ + I
Sbjct: 183 ASLRLDAIASAGLGMSRSKMADAI 206
>gi|254416092|ref|ZP_05029847.1| photosystem II S4 domain protein [Coleofasciculus chthonoplastes
PCC 7420]
gi|196177025|gb|EDX72034.1| photosystem II S4 domain protein [Coleofasciculus chthonoplastes
PCC 7420]
Length = 259
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 97/204 (47%), Positives = 133/204 (65%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
+DLLKGV +++ V +++ A +A EV+ +DFL+PPVL E +L +V+ +
Sbjct: 5 EDLLKGVENRDT---VARVIDQAEQAIKTWEVVLTDFLSPPVLVEIQQQFARLTEVQLLP 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL + E + VAAL I GNF F P +H DFLG+ILGTGI REK
Sbjct: 62 WGGYPQAERQRLGITREELPLDQSQVEVAALDIEGNFLFDPATHRDFLGAILGTGIVREK 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
+GDII+ GE+GAQ +V+PE+ +L T L +V +V V I L L+ P+ K T+E
Sbjct: 122 VGDIIVLGERGAQVIVIPEIVPFLETQLTQVRSVPVKTRPIQLSQLKIREPKKKEMTTVE 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
AS+R+DA+ASAGF SRSK+ +LI
Sbjct: 182 ASMRLDAIASAGFGTSRSKMADLI 205
>gi|86606443|ref|YP_475206.1| S4 domain-containing protein [Synechococcus sp. JA-3-3Ab]
gi|86554985|gb|ABC99943.1| S4 domain protein [Synechococcus sp. JA-3-3Ab]
Length = 262
Score = 183 bits (465), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 100/207 (48%), Positives = 139/207 (67%), Gaps = 7/207 (3%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
+LLKG + E + IL++ +A +V+ SDFL+P + E L LA+++ +A
Sbjct: 6 ELLKGAEYR---ETLARILDLGEQALKTWQVVWSDFLSPAEVAEVQSRLHNLAELQVMAW 62
Query: 127 GGYPQAERCRLSVGHPEALT----SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAR 182
GGY QAER RL++ PE ++ +AA+ I GNF F P +H DFLG++L TGIAR
Sbjct: 63 GGYAQAERQRLALARPEVSLEVEGAEGIPLAAVQIQGNFLFDPATHRDFLGALLATGIAR 122
Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 242
EK+GDI++ GE GAQ +VVPEL DYL +L +V +V V +RIPL L+ +PPR KS +
Sbjct: 123 EKVGDILVVGEFGAQAIVVPELVDYLSLNLTQVRSVPVKVSRIPLSQLKVQPPRVKSITS 182
Query: 243 IEASLRVDALASAGFKLSRSKLVNLIR 269
+EASLR+DA+ASAGF LSRSK+V I+
Sbjct: 183 VEASLRLDAVASAGFGLSRSKMVEEIQ 209
>gi|86609679|ref|YP_478441.1| S4 domain-containing protein [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86558221|gb|ABD03178.1| S4 domain protein [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 259
Score = 183 bits (464), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 96/199 (48%), Positives = 131/199 (65%), Gaps = 8/199 (4%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
E + +L++ +A +V+ SDFL+PP + E L L +++ A GGYPQAER RL+
Sbjct: 8 ETLARVLDLGEQALKTWQVVWSDFLSPPEIAEVQARLCNLTELQVWAWGGYPQAERQRLA 67
Query: 139 VGHPEA------LTSDPDIV--AALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
+ E SDP+ + AA+ I GNF F P +H DFLG++LG GIAREK+GDI+L
Sbjct: 68 LARSEVGLDVRDPKSDPEGIPLAAIQIQGNFLFDPATHRDFLGALLGAGIAREKVGDILL 127
Query: 191 QGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVD 250
G+ GAQ +VVPE+ DYL +L +V V V RIPL L +PPR KS ++EASLR+D
Sbjct: 128 LGDSGAQAIVVPEMVDYLTLNLTQVRTVPVKVGRIPLSQLNIQPPRVKSITSVEASLRLD 187
Query: 251 ALASAGFKLSRSKLVNLIR 269
A+ASAGF +SRSK+V I+
Sbjct: 188 AVASAGFGISRSKMVEEIQ 206
>gi|428215265|ref|YP_007088409.1| photosystem II S4 domain-containing protein [Oscillatoria acuminata
PCC 6304]
gi|428003646|gb|AFY84489.1| photosystem II S4 domain protein [Oscillatoria acuminata PCC 6304]
Length = 259
Score = 183 bits (464), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 103/206 (50%), Positives = 138/206 (66%), Gaps = 8/206 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++ E++ IL++A RA EV +DFL+P L E+ A +L +V VA
Sbjct: 5 EELLKGVENR---EQMARILDLADRALKTWEVAVTDFLSPIELMETQTAFNRLTEVHLVA 61
Query: 126 QGGYPQAERCRLSVGH---PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAR 182
GGYPQAER R+++ P TS P +AAL I GNF F SH DFLGSILGTGI R
Sbjct: 62 FGGYPQAERQRVAIARIDLPLDATSVP--LAALEIAGNFLFDSASHRDFLGSILGTGIVR 119
Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 242
EK+GDII+ GE+GAQ +V P+L ++L SL +V +V V RI L L+ P+ K T
Sbjct: 120 EKVGDIIVLGERGAQAVVSPDLVEFLEMSLTQVRSVPVKTQRIELGELKIREPKKKELTT 179
Query: 243 IEASLRVDALASAGFKLSRSKLVNLI 268
+EAS+R+DA+ASAGF +SRSK+ +LI
Sbjct: 180 VEASMRLDAIASAGFGMSRSKMADLI 205
>gi|384249277|gb|EIE22759.1| photosystem II S4 domain protein [Coccomyxa subellipsoidea C-169]
Length = 298
Score = 183 bits (464), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 104/233 (44%), Positives = 152/233 (65%), Gaps = 14/233 (6%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
DDLLKGV ++ ++V ++E A+RA+S + +DF PPV+ ++M A+++LA V A++
Sbjct: 32 DDLLKGVNPQHR-DDVARVVEQAQRAASMWTTICTDFHPPPVVADAMNAMKQLAGVAALS 90
Query: 126 QGGYPQAERCRLSVGHP---EALTSDP---------DIVAALSITGNFGFQPCSHGDFLG 173
GGY QAER R+ +G EAL +DP + VAAL + GNF F +H DFLG
Sbjct: 91 FGGYAQAERTRIFLGQEDIIEALKADPQQVSCKAQAEGVAALRVQGNFMFDAATHRDFLG 150
Query: 174 SILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYE 233
+ILGTGI R K+GDIIL GE GAQ LV EL D+ +L +V +V V R+ L L
Sbjct: 151 AILGTGIERSKVGDIILVGETGAQILVAEELLDHFELNLTQVRSVPVVSRRMELAELSVR 210
Query: 234 PPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSLASLVQISAKASAI 286
P +T++ +++EASLR+DA+ASAGF++SR+K +LI+ + + I AK S++
Sbjct: 211 PAKTETVRSVEASLRLDAVASAGFRISRAKAADLIKQGDV-RVNWIQAKGSSL 262
>gi|254423526|ref|ZP_05037244.1| photosystem II S4 domain protein [Synechococcus sp. PCC 7335]
gi|196191015|gb|EDX85979.1| photosystem II S4 domain protein [Synechococcus sp. PCC 7335]
Length = 259
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 99/203 (48%), Positives = 134/203 (66%), Gaps = 4/203 (1%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
DLLK +K A+ I++ A +A E + +DFL+PP + E+ +L+DV A+A
Sbjct: 6 DLLKHSENKEAL---SRIIDQAEQAIRTWEPVATDFLSPPEVFEAQATFGRLSDVHAIAN 62
Query: 127 GGYPQAERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
GGYPQAER RL + E L P +AA+SI GNF F +H DFLGS+LGTGI R K+
Sbjct: 63 GGYPQAERQRLIIARAEIPLDETPVPLAAISIAGNFLFDTATHRDFLGSLLGTGIVRAKV 122
Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
GDII+ GE+GAQ +VVPEL ++L TSL +V +VSV I + L P+ K T+EA
Sbjct: 123 GDIIVLGERGAQAVVVPELVEFLTTSLTQVRSVSVKTRPIEMSELRVREPKKKEMTTVEA 182
Query: 246 SLRVDALASAGFKLSRSKLVNLI 268
S+R+DALASAGF +SRSK+ ++I
Sbjct: 183 SMRLDALASAGFGMSRSKMADMI 205
>gi|354567372|ref|ZP_08986541.1| photosystem II S4 domain protein [Fischerella sp. JSC-11]
gi|353542644|gb|EHC12105.1| photosystem II S4 domain protein [Fischerella sp. JSC-11]
Length = 259
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/204 (47%), Positives = 136/204 (66%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKG+ +++ V +++ A +A EV+ +DFL+PP L E +L +V+ +A
Sbjct: 5 EELLKGIENRDT---VARVIDQAEQAIKTWEVVLTDFLSPPELAEIQRVFSRLTEVQLLA 61
Query: 126 QGGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER R+++ E L +AAL I GNF F +H DFLG++LGTGI REK
Sbjct: 62 WGGYPQAERQRMAIARSELPLDLSQVAIAALDIAGNFLFDTATHRDFLGAMLGTGIIREK 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
GDII+ GE+GAQ +VVPEL ++L +L++V +V V RI L L+ P+ K T+E
Sbjct: 122 TGDIIVLGEQGAQAIVVPELVEFLEMNLKQVRSVPVKTQRIDLSELKVREPKKKELTTVE 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
ASLR+DA+ASAGF +SRSK+V LI
Sbjct: 182 ASLRLDAIASAGFGMSRSKMVELI 205
>gi|119491309|ref|ZP_01623363.1| RNA-binding S4 [Lyngbya sp. PCC 8106]
gi|119453473|gb|EAW34635.1| RNA-binding S4 [Lyngbya sp. PCC 8106]
Length = 259
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/204 (46%), Positives = 135/204 (66%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LL V +++ I +++ A +A EV ++DFL+PP L E+ +L +V+ V
Sbjct: 5 EELLNSVENRDCI---ARVIDQAEQAIKTWEVTYTDFLSPPELAEAQRIFNRLTEVQLVT 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER R+++ E D + V A+ I+GNF F +H DFLGS+LGTGI REK
Sbjct: 62 GGGYPQAERQRIAIAREELPLDDSSVAVEAIDISGNFLFDTATHRDFLGSMLGTGIVREK 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
GDII+ GE+GA +VVPEL ++L +L +V +V V RI L L+ PP+ K T+E
Sbjct: 122 TGDIIVLGERGAHAVVVPELVEFLEMNLTQVRSVPVKTKRIELSELKIRPPKKKEMTTVE 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
AS+R+DA+ASAGF +SRSK+V+LI
Sbjct: 182 ASMRLDAVASAGFGMSRSKMVSLI 205
>gi|298493122|ref|YP_003723299.1| photosystem II S4 domain-containing protein ['Nostoc azollae' 0708]
gi|298235040|gb|ADI66176.1| photosystem II S4 domain protein ['Nostoc azollae' 0708]
Length = 259
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 134/203 (66%), Gaps = 4/203 (1%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
+LL+GV ++++I +++ A +A EV+ +DFL+PP L E +L DV VA
Sbjct: 6 ELLRGVENRDSI---ARVIDQAEQAIKTWEVVLTDFLSPPELAEIQRVFSRLTDVHLVAW 62
Query: 127 GGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
GGYPQAER R+++ E L + AL I GNF F +H DFLG+ILGTGI REK
Sbjct: 63 GGYPQAERQRVTIARSELPLDQSQVAITALEIVGNFLFDTATHRDFLGAILGTGIVREKT 122
Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
GDI++ GE+GAQ +VVPEL ++L SL++V +V V I + L+ P+ K T+EA
Sbjct: 123 GDIMVLGERGAQVIVVPELTEFLEMSLKQVRSVPVKTQPIDINELKIREPKKKELTTVEA 182
Query: 246 SLRVDALASAGFKLSRSKLVNLI 268
SLR+DA+ASAGF +SRSK+V+LI
Sbjct: 183 SLRLDAIASAGFGMSRSKMVDLI 205
>gi|427707479|ref|YP_007049856.1| photosystem II S4 domain-containing protein [Nostoc sp. PCC 7107]
gi|427359984|gb|AFY42706.1| photosystem II S4 domain protein [Nostoc sp. PCC 7107]
Length = 259
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/205 (46%), Positives = 139/205 (67%), Gaps = 6/205 (2%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++++ V +++ A +A EV+ +DFL+PP L E +L +V+ +A
Sbjct: 5 EELLKGVENRDS---VARVIDQAEQAIKTWEVVLTDFLSPPELAEIQRIFNRLTEVQLLA 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDIVA--ALSITGNFGFQPCSHGDFLGSILGTGIARE 183
GGYPQAER R+++ E L D VA L + GNF F +H DFLG++LGTGI RE
Sbjct: 62 WGGYPQAERQRMAIARGE-LPLDESQVALVVLEVAGNFLFDTATHRDFLGAMLGTGIVRE 120
Query: 184 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTI 243
K GD+I+ GE+GAQ +VVPE+A++L +L++V +V V RI + L+ P+ K T+
Sbjct: 121 KTGDVIVLGERGAQVIVVPEIAEFLEMNLQQVRSVPVKTQRIDISELKIREPKKKELTTV 180
Query: 244 EASLRVDALASAGFKLSRSKLVNLI 268
EASLR+DA+ASAGF +SRSK+V+LI
Sbjct: 181 EASLRLDAIASAGFGMSRSKMVDLI 205
>gi|75907235|ref|YP_321531.1| RNA-binding protein S4 [Anabaena variabilis ATCC 29413]
gi|75700960|gb|ABA20636.1| RNA-binding S4 [Anabaena variabilis ATCC 29413]
Length = 259
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/204 (47%), Positives = 133/204 (65%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++++ V +++ A +A EV+ +DF +PP L E +L DV+ VA
Sbjct: 5 EELLKGVENRDS---VARVIDQAEQAIKTWEVVVTDFFSPPELAEIQRVFSRLTDVQLVA 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL++ E + + L I GNF F +H DFLG++LGTGI REK
Sbjct: 62 WGGYPQAERQRLAIARAELPLDQSQVSLVVLEIAGNFLFDSATHRDFLGAMLGTGIVREK 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
GDII+ GE+GAQ +VVPELA++L L +V +V V I L L+ P+ K T+E
Sbjct: 122 TGDIIVLGERGAQAIVVPELAEFLQIHLNQVRSVPVKTQPIELAELKVREPKKKELTTVE 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
ASLR+DA+ASAGF +SRSK+V+LI
Sbjct: 182 ASLRLDAIASAGFGMSRSKMVDLI 205
>gi|186683162|ref|YP_001866358.1| RNA-binding S4 domain-containing protein [Nostoc punctiforme PCC
73102]
gi|186465614|gb|ACC81415.1| RNA-binding S4 domain protein [Nostoc punctiforme PCC 73102]
Length = 259
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 93/204 (45%), Positives = 134/204 (65%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++++ V +++ A +A EV+ +DFL+PP L E +L +V+ VA
Sbjct: 5 EELLKGVENRDS---VARVIDQAEQAIKTWEVVLTDFLSPPELAEIQRVFNRLTEVQLVA 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER R+++ E + + A+ I GNF F SH DFLG++LGTGI REK
Sbjct: 62 WGGYPQAERQRIAIARSELPLDQSQVSLVAVEIAGNFLFDTASHRDFLGAMLGTGIVREK 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
GD+I+ GE+GAQ +V PEL ++L SL++V +V V RI + L P+ K T+E
Sbjct: 122 TGDVIVLGERGAQAIVAPELVEFLEMSLKQVRSVPVKTQRIEITELRVREPKKKELTTVE 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
ASLR+DA+ASAGF +SRSK+V+ I
Sbjct: 182 ASLRLDAIASAGFGMSRSKMVDFI 205
>gi|428305393|ref|YP_007142218.1| photosystem II S4 domain-containing protein [Crinalium epipsammum
PCC 9333]
gi|428246928|gb|AFZ12708.1| photosystem II S4 domain protein [Crinalium epipsammum PCC 9333]
Length = 259
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 97/204 (47%), Positives = 134/204 (65%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++ E +++ A +A EV+ +DFL+PP L E +L +V VA
Sbjct: 5 EELLKGVENR---ETAARVIDQAEQALKTWEVVVTDFLSPPELVEMQQMFGRLTEVHLVA 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL++ E P + +AA+SI GNF F +H DFLGS+LG GI REK
Sbjct: 62 GGGYPQAERQRLAIARSELPLELPQVPLAAVSIAGNFLFDSATHRDFLGSMLGCGIVREK 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
GDII+ GE+GAQ +++PE+ +YL T L +V +V V+ RI L L+ P+ K T+E
Sbjct: 122 TGDIIVLGEQGAQAIIIPEMVEYLETHLTQVRSVPVNTRRIELSELKIREPKKKELTTVE 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
ASLR+DA+ASAGF +SRSK+V I
Sbjct: 182 ASLRLDAIASAGFGMSRSKMVEFI 205
>gi|220907729|ref|YP_002483040.1| photosystem II S4 domain-containing protein [Cyanothece sp. PCC
7425]
gi|219864340|gb|ACL44679.1| photosystem II S4 domain protein [Cyanothece sp. PCC 7425]
Length = 259
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 97/203 (47%), Positives = 133/203 (65%), Gaps = 4/203 (1%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
+LLKGV ++ E + +L+ +A +V+ SDFL+PP L ES L +L ++ ++
Sbjct: 6 ELLKGVENR---ETLSRVLDQVEQALKTWDVVCSDFLSPPELAESQTLLARLTEIHSLGW 62
Query: 127 GGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
GGYPQAER RL++ E L + + AL I GNF F P SH DFLG+ILGTGI REK+
Sbjct: 63 GGYPQAERQRLAIARQEVPLEGEQVPLVALEIAGNFLFDPASHRDFLGAILGTGIVREKV 122
Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
GDII+ GE+GAQ + E+A++L L +V V V RI L L+ PP+ K T+EA
Sbjct: 123 GDIIVLGERGAQAIATTEMAEFLELHLTQVRTVPVQTRRIELSELKIRPPQKKELTTVEA 182
Query: 246 SLRVDALASAGFKLSRSKLVNLI 268
SLR+DA+ASAGF +SRSK+ +LI
Sbjct: 183 SLRLDAIASAGFGMSRSKMADLI 205
>gi|17230382|ref|NP_486930.1| hypothetical protein alr2890 [Nostoc sp. PCC 7120]
gi|17131984|dbj|BAB74589.1| alr2890 [Nostoc sp. PCC 7120]
Length = 259
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 99/205 (48%), Positives = 135/205 (65%), Gaps = 6/205 (2%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++++ V +++ A +A EV+ +DFL+PP L E +L DV+ VA
Sbjct: 5 EELLKGVENRDS---VARVIDQAEQAIKTWEVVVTDFLSPPELAEIQRVFSRLTDVQLVA 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDIVA--ALSITGNFGFQPCSHGDFLGSILGTGIARE 183
GGYPQAER RL++ E L D V+ L I GNF F +H DFLG++LGTGI RE
Sbjct: 62 WGGYPQAERQRLAIARAE-LPLDQSQVSLLVLEIAGNFLFDSATHRDFLGAMLGTGIVRE 120
Query: 184 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTI 243
K GDII+ GE+GAQ +VVPELA++L L +V +V V I L L+ P+ K T+
Sbjct: 121 KTGDIIVLGERGAQAIVVPELAEFLQIHLNQVRSVPVKTQPIELTELKVREPKKKELTTV 180
Query: 244 EASLRVDALASAGFKLSRSKLVNLI 268
EASLR+DA+ASAGF +SRSK+V+ I
Sbjct: 181 EASLRLDAIASAGFGMSRSKMVDFI 205
>gi|423067872|ref|ZP_17056662.1| photosystem II S4 domain protein [Arthrospira platensis C1]
gi|406710615|gb|EKD05822.1| photosystem II S4 domain protein [Arthrospira platensis C1]
Length = 287
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 92/203 (45%), Positives = 137/203 (67%), Gaps = 4/203 (1%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
+LL G+ +++ I I+++A +A E+ ++FL+PP + E+ +L +++A++
Sbjct: 34 ELLNGIENRDCI---ARIIDLAEQALKTWEITQTEFLSPPEIAEAQGIFRRLTEIQALSW 90
Query: 127 GGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
GGYPQAER R+++ E L S +AA+ I+GNF F +H DFLGS+LGTGI REK
Sbjct: 91 GGYPQAERQRMAIARSEIPLDSSHVEIAAIDISGNFLFDTATHRDFLGSLLGTGIVREKT 150
Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
GD+I+ GE+GAQ +V+PEL +YL +L +V V V I L L+ P+ K+ T+EA
Sbjct: 151 GDLIVLGERGAQAIVIPELVEYLEMNLTQVRTVPVKVQPIDLSELKVREPKKKAMTTVEA 210
Query: 246 SLRVDALASAGFKLSRSKLVNLI 268
SLR+DA+ASAGF +SRSK+VNLI
Sbjct: 211 SLRLDAIASAGFGMSRSKMVNLI 233
>gi|428224087|ref|YP_007108184.1| photosystem II S4 domain-containing protein [Geitlerinema sp. PCC
7407]
gi|427983988|gb|AFY65132.1| photosystem II S4 domain protein [Geitlerinema sp. PCC 7407]
Length = 259
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 92/204 (45%), Positives = 134/204 (65%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
D+LL+ ++ A +++ A RA EV+ +DFL+PP + ++ +L +V+ +
Sbjct: 5 DELLQKAQNREA---AAQLIDAAERAIKTWEVVLTDFLSPPEMADAQQMFGRLTEVQLMG 61
Query: 126 QGGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL++ PE L + VA L I GNF F P +H DFLG++LGTGI R+K
Sbjct: 62 WGGYPQAERQRLAIARPEIPLEASQVEVAVLEIAGNFLFDPATHRDFLGAVLGTGIVRDK 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
+GDI++ G++GAQ LVVPE+ D+L SL +V +V V I L L+ P+ K T+E
Sbjct: 122 VGDIVVLGDRGAQALVVPEMVDFLAMSLTQVRSVPVKTQPIDLAELKVREPKKKEMTTVE 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
AS+R+DA+ASAGF +SRSK+ +LI
Sbjct: 182 ASMRLDAIASAGFGMSRSKMADLI 205
>gi|376002425|ref|ZP_09780258.1| conserved hypothetical protein [Arthrospira sp. PCC 8005]
gi|375329165|emb|CCE16011.1| conserved hypothetical protein [Arthrospira sp. PCC 8005]
Length = 259
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 92/203 (45%), Positives = 137/203 (67%), Gaps = 4/203 (1%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
+LL G+ +++ I I+++A +A E+ ++FL+PP + E+ +L +++A++
Sbjct: 6 ELLNGIENRDCI---ARIIDLAEQALKTWEITQTEFLSPPEIAEAQGIFRRLTEIQALSW 62
Query: 127 GGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
GGYPQAER R+++ E L S +AA+ I+GNF F +H DFLGS+LGTGI REK
Sbjct: 63 GGYPQAERQRMAIARSEIPLDSSHVEIAAIDISGNFLFDTATHRDFLGSLLGTGIVREKT 122
Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
GD+I+ GE+GAQ +V+PEL +YL +L +V V V I L L+ P+ K+ T+EA
Sbjct: 123 GDLIVLGERGAQAIVIPELVEYLEMNLTQVRTVPVKVQPIDLSELKVREPKKKAMTTVEA 182
Query: 246 SLRVDALASAGFKLSRSKLVNLI 268
SLR+DA+ASAGF +SRSK+VNLI
Sbjct: 183 SLRLDAIASAGFGMSRSKMVNLI 205
>gi|209525233|ref|ZP_03273776.1| photosystem II S4 domain protein [Arthrospira maxima CS-328]
gi|209494418|gb|EDZ94730.1| photosystem II S4 domain protein [Arthrospira maxima CS-328]
Length = 259
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 92/203 (45%), Positives = 137/203 (67%), Gaps = 4/203 (1%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
+LL G+ +++ I I+++A +A E+ ++FL+PP + E+ +L +++A++
Sbjct: 6 ELLNGIENRDCI---ARIIDLAEQALKTWEITQTEFLSPPEIAEAQGIFRRLTEIQALSW 62
Query: 127 GGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
GGYPQAER R+++ E L S +AA+ I+GNF F +H DFLGS+LGTGI REK
Sbjct: 63 GGYPQAERQRMAIARSEIPLDSSHVEIAAIDISGNFLFDTATHRDFLGSLLGTGIVREKT 122
Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
GD+I+ GE+GAQ +V+PEL +YL +L +V V V I L L+ P+ K+ T+EA
Sbjct: 123 GDLIVLGERGAQAIVIPELVEYLEMNLTQVRTVPVKVQPIDLSELKVREPKKKAMTTVEA 182
Query: 246 SLRVDALASAGFKLSRSKLVNLI 268
SLR+DA+ASAGF +SRSK+VNLI
Sbjct: 183 SLRLDAIASAGFGMSRSKMVNLI 205
>gi|282897968|ref|ZP_06305963.1| RNA-binding S4 [Raphidiopsis brookii D9]
gi|281197112|gb|EFA72013.1| RNA-binding S4 [Raphidiopsis brookii D9]
Length = 259
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 97/204 (47%), Positives = 134/204 (65%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV +++ I H+++ A +A EV+ +DFL+PP L E +L +V VA
Sbjct: 5 EELLKGVENRDVI---AHVIDQAEQAIKTWEVVITDFLSPPELAEIERVFNRLTEVHLVA 61
Query: 126 QGGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER R+++ E L V L I GNF F +H DFLG++LGTGI REK
Sbjct: 62 WGGYPQAERQRVAIIRSEMPLDVSQVAVTVLDIAGNFLFDTATHRDFLGAMLGTGIVREK 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
GDII+ GE+GAQ +VVPELA++L +L++V +V V I L+ P+ K T+E
Sbjct: 122 TGDIIILGERGAQAIVVPELAEFLTMNLQQVRSVPVKTQVIDPSELKIREPKKKELTTVE 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
ASLR+DA+ASAGF +SRSK+V+LI
Sbjct: 182 ASLRLDAIASAGFGMSRSKMVDLI 205
>gi|81300312|ref|YP_400520.1| RNA-binding S4 [Synechococcus elongatus PCC 7942]
gi|81169193|gb|ABB57533.1| RNA-binding S4 [Synechococcus elongatus PCC 7942]
Length = 259
Score = 179 bits (455), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 99/219 (45%), Positives = 141/219 (64%), Gaps = 8/219 (3%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
DLL G +++ + ++++A ++ E SDFL+PP L E+ L +L +++ +
Sbjct: 6 DLLAGADNRDCL---ARLIDLAEQSIRTWEPAISDFLSPPELAEAQERLGRLTELQLLPW 62
Query: 127 GGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
GGYPQAER RL++ E L D +AA+ I GNF F P SH DFLGS+LGTG+ REK+
Sbjct: 63 GGYPQAERQRLAIARSEMPLDVDQIAIAAVEIAGNFLFDPASHRDFLGSLLGTGLVREKV 122
Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
GDI++ G++GAQ LV+PEL ++L L +V +V V IPL L PR K T+EA
Sbjct: 123 GDILVLGDRGAQALVMPELVEFLGLQLTQVRSVPVKVREIPLAELRIPAPRIKQLTTVEA 182
Query: 246 SLRVDALASAGFKLSRSKLVNLIRYSSLASLVQISAKAS 284
SLR+DA+ASAGF LSRSK+V+LI V+++ KA+
Sbjct: 183 SLRLDAIASAGFGLSRSKMVDLINRGE----VRVNWKAA 217
>gi|434387463|ref|YP_007098074.1| photosystem II S4 domain protein [Chamaesiphon minutus PCC 6605]
gi|428018453|gb|AFY94547.1| photosystem II S4 domain protein [Chamaesiphon minutus PCC 6605]
Length = 259
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/205 (48%), Positives = 137/205 (66%), Gaps = 6/205 (2%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLK V ++ E V +++A RA EV+ +DFL+PP + E +L+DV+ +A
Sbjct: 5 EELLKRVENR---EVVARAIDLADRAIKNWEVVETDFLSPPEIAEIKSVFSRLSDVEIIA 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDIV--AALSITGNFGFQPCSHGDFLGSILGTGIARE 183
GGYPQAER RL + E L +P V AA+ I GNF F P +H DFLG++LG GI R+
Sbjct: 62 TGGYPQAERQRLGICRAE-LPFEPSQVPLAAIQIAGNFLFDPPTHRDFLGAMLGCGIVRD 120
Query: 184 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTI 243
K GDII+ GE+GAQ +V PEL ++L T+L +V +V V RI L L+ P+ K T+
Sbjct: 121 KTGDIIVLGEQGAQAIVAPELVEFLETNLTQVRSVPVKTQRIDLSELKIREPKKKEMTTV 180
Query: 244 EASLRVDALASAGFKLSRSKLVNLI 268
EASLR+DA+ASAGF +SRSK+V+LI
Sbjct: 181 EASLRLDAIASAGFGMSRSKMVDLI 205
>gi|428310855|ref|YP_007121832.1| photosystem II S4 domain-containing protein [Microcoleus sp. PCC
7113]
gi|428252467|gb|AFZ18426.1| photosystem II S4 domain protein [Microcoleus sp. PCC 7113]
Length = 259
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/204 (44%), Positives = 136/204 (66%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++ E + ++++A +A EV+ +DFL+PP + + ++L +V+ +A
Sbjct: 5 EELLKGVENR---ESIARVIDLAEQAIKTWEVVFTDFLSPPEVAQIQQQFQRLTEVQLLA 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER R+++ E + VAAL I GNF F P +H DFLG+ILGTG+ R+K
Sbjct: 62 WGGYPQAERQRIAIARSELPLDRAQVAVAALDIAGNFLFDPATHRDFLGAILGTGLVRDK 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
IGDII+ GE+G Q +VVPE+ +L T L +V +V V I L L+ P+ K T+E
Sbjct: 122 IGDIIVLGERGGQVIVVPEIMGFLETQLTQVRSVPVKTRPIDLSELKIREPKKKEMTTVE 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
AS+R+DA+ASAGF +SR+K+ +LI
Sbjct: 182 ASMRLDAIASAGFGMSRNKMADLI 205
>gi|282899112|ref|ZP_06307093.1| RNA-binding S4 [Cylindrospermopsis raciborskii CS-505]
gi|281196028|gb|EFA70944.1| RNA-binding S4 [Cylindrospermopsis raciborskii CS-505]
Length = 259
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/204 (47%), Positives = 134/204 (65%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV +++ I H+++ A +A EV+ +DFL+PP L E +L +V VA
Sbjct: 5 EELLKGVENRDII---AHVIDQAEQAIKTWEVVITDFLSPPELAEIERVFSRLMEVHLVA 61
Query: 126 QGGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGY QAER R+++ E L +V L I GNF F +H DFLG++LGTGI REK
Sbjct: 62 WGGYLQAERQRVAIARSEMPLDISQVVVTVLDIAGNFLFDTATHRDFLGAMLGTGIVREK 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
GDII+ GE+GAQ +VVPELA++L +L++V +V V I L+ P+ K T+E
Sbjct: 122 TGDIIILGERGAQAIVVPELAEFLTMNLQQVRSVPVKTQVIDSSELKIREPKKKELTTVE 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
ASLR+DA+ASAGF +SRSK+V+LI
Sbjct: 182 ASLRLDAIASAGFGMSRSKMVDLI 205
>gi|411119486|ref|ZP_11391866.1| photosystem II S4 domain protein [Oscillatoriales cyanobacterium
JSC-12]
gi|410711349|gb|EKQ68856.1| photosystem II S4 domain protein [Oscillatoriales cyanobacterium
JSC-12]
Length = 259
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 94/204 (46%), Positives = 136/204 (66%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
DDLLKGV ++ AI +++ + A EV+ +DFL+PP L E L +V+ VA
Sbjct: 5 DDLLKGVENREAI---ARVIDQSELAIKTWEVVCTDFLSPPELAEIQEVFSCLTEVQMVA 61
Query: 126 QGGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGY QAER RL++ E L+ + ++AL I GNF F P +H DFLG+ILGTGI R+K
Sbjct: 62 WGGYLQAERQRLAIARAELPLSVEQVSLSALEIAGNFLFDPATHRDFLGAILGTGIVRDK 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
+GD+++ GE+GAQ +VVPE+ ++LI +L +V +V V I L+ P+ K T+E
Sbjct: 122 VGDVLVLGERGAQAIVVPEMVEFLIMNLTQVRSVPVKTRAIAFDELKIREPKKKEMTTVE 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
AS+R+DA+ASAGF +SR+K+V+LI
Sbjct: 182 ASMRLDAIASAGFGISRNKMVDLI 205
>gi|170079381|ref|YP_001736019.1| S4 domain-containing protein [Synechococcus sp. PCC 7002]
gi|169887050|gb|ACB00764.1| S4 domain protein [Synechococcus sp. PCC 7002]
Length = 253
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 94/202 (46%), Positives = 134/202 (66%), Gaps = 4/202 (1%)
Query: 68 LLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQG 127
+LKGV ++ E+ +L+ A +A E++ +DFL+PPVL E++ KL +V+ V G
Sbjct: 1 MLKGVENR---AELSRLLDQADQAIRTWEIVQTDFLSPPVLYEALEIFGKLTEVQVVHGG 57
Query: 128 GYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 186
GYPQAER RL++ E L + +AAL I GNF F +H DFLGS+LGTG+ R+K+G
Sbjct: 58 GYPQAERQRLAIAREEIPLDASHVEIAALDIAGNFLFDTATHRDFLGSLLGTGLVRDKVG 117
Query: 187 DIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEAS 246
DI++ G++GAQ LV+PEL +L TSL +V +V V IPL L+ PP+ K T+EAS
Sbjct: 118 DILVLGDRGAQTLVIPELVSFLETSLVQVRSVPVKTRSIPLEELKVRPPKKKELTTVEAS 177
Query: 247 LRVDALASAGFKLSRSKLVNLI 268
LR+DA+ SAG +SR+K+ I
Sbjct: 178 LRLDAIGSAGLGMSRTKMAEAI 199
>gi|113477614|ref|YP_723675.1| RNA-binding protein S4 [Trichodesmium erythraeum IMS101]
gi|110168662|gb|ABG53202.1| RNA-binding S4 [Trichodesmium erythraeum IMS101]
Length = 259
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/204 (45%), Positives = 135/204 (66%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKG+ ++ E + I+++A +A E+ SDFL+PP + ES +KL +V V+
Sbjct: 5 EELLKGIQNR---ETITRIIDLAEQAIKTWEITQSDFLSPPEIFESETIFQKLTEVDIVS 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL++ + + + A++I GNF F +H DFLGS+LGTGI REK
Sbjct: 62 WGGYPQAERKRLAIARSDLPIDTSSVELKAINIEGNFLFDTATHRDFLGSMLGTGIEREK 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
GDII+ GE+GAQ +VVP+L +YL + ++V +V V I L+ P+ K T+E
Sbjct: 122 TGDIIVLGERGAQAIVVPKLVEYLEMNFQQVRSVPVKIKPIEFSELKIRQPKKKELTTVE 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
AS+R+DA+ASAGF +SRSK+V+LI
Sbjct: 182 ASMRLDAVASAGFGMSRSKMVDLI 205
>gi|409990192|ref|ZP_11273604.1| RNA-binding protein S4 [Arthrospira platensis str. Paraca]
gi|409938945|gb|EKN80197.1| RNA-binding protein S4 [Arthrospira platensis str. Paraca]
Length = 259
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 92/203 (45%), Positives = 135/203 (66%), Gaps = 4/203 (1%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
+LL G+ +++ I I+++A +A E+ ++FL+PP + E+ ++L +V+A +
Sbjct: 6 ELLNGIENRDCI---ARIIDLAEQALKTWEITQTEFLSPPEIAEAQGIFQRLTEVQAFSW 62
Query: 127 GGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
GGYPQAER R+++ E L S +AA+ I+GNF F +H DFLGS+LGTGI REK
Sbjct: 63 GGYPQAERQRMAIARSELPLDSSHVEIAAIDISGNFLFDTATHRDFLGSLLGTGIVREKT 122
Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
GDII+ GE+G Q +V+PEL +YL +L +V V V I L L+ P+ K+ T+EA
Sbjct: 123 GDIIVLGERGGQAIVIPELVEYLEMNLTQVRTVPVKVQPIDLSELKVREPKKKAMTTVEA 182
Query: 246 SLRVDALASAGFKLSRSKLVNLI 268
SLR+DA+ASAGF +SRSK+V LI
Sbjct: 183 SLRLDAIASAGFGMSRSKMVTLI 205
>gi|291568923|dbj|BAI91195.1| hypothetical protein [Arthrospira platensis NIES-39]
Length = 259
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 92/203 (45%), Positives = 135/203 (66%), Gaps = 4/203 (1%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
+LL G+ +++ I I+++A +A E+ ++FL+PP + E+ ++L +V+A +
Sbjct: 6 ELLNGIENRDCI---ARIIDLAEQALKTWEITQTEFLSPPEIAEAQGIFQRLTEVQAFSW 62
Query: 127 GGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
GGYPQAER R+++ E L S +AA+ I+GNF F +H DFLGS+LGTGI REK
Sbjct: 63 GGYPQAERQRMAIARSELPLDSSHVEIAAIDISGNFLFDTATHRDFLGSLLGTGIVREKT 122
Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
GDII+ GE+G Q +V+PEL +YL +L +V V V I L L+ P+ K+ T+EA
Sbjct: 123 GDIIVLGERGGQAIVIPELVEYLEMNLTQVRTVPVKVQPIDLSELKVREPKKKAMTTVEA 182
Query: 246 SLRVDALASAGFKLSRSKLVNLI 268
SLR+DA+ASAGF +SRSK+V LI
Sbjct: 183 SLRLDAIASAGFGMSRSKMVTLI 205
>gi|428780106|ref|YP_007171892.1| photosystem II S4 domain-containing protein [Dactylococcopsis
salina PCC 8305]
gi|428694385|gb|AFZ50535.1| photosystem II S4 domain protein [Dactylococcopsis salina PCC 8305]
Length = 259
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 89/209 (42%), Positives = 135/209 (64%), Gaps = 4/209 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
+ +LKGV ++ EE+ I+++A +A EV+ +DFL+PPV+ E+ L +++ +
Sbjct: 5 EQILKGVENR---EEITRIIDIAEQAMKTWEVVCTDFLSPPVMVEARERFSSLTEIQFIV 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER R+++ + + +AAL + GNF F +H DFLG+ILGTG+ R K
Sbjct: 62 WGGYPQAERSRMAIARSDLPLDQSQVPIAALDVAGNFLFDTANHRDFLGAILGTGVVRGK 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
+GDII+ GE+GAQ LVVPEL +L +L +V +V V I L L+ PP+ K T+E
Sbjct: 122 VGDIIVLGERGAQILVVPELVSFLEANLNQVRSVPVKTREITLEELKIRPPKKKEMTTVE 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLIRYSSL 273
AS+R+DA+ASA F +SRSK+ + I ++
Sbjct: 182 ASMRLDAVASAAFGMSRSKMASAIEQGNV 210
>gi|16330752|ref|NP_441480.1| hypothetical protein sll1252 [Synechocystis sp. PCC 6803]
gi|383322494|ref|YP_005383347.1| hypothetical protein SYNGTI_1585 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|383325663|ref|YP_005386516.1| hypothetical protein SYNPCCP_1584 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|383491547|ref|YP_005409223.1| hypothetical protein SYNPCCN_1584 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|384436814|ref|YP_005651538.1| hypothetical protein SYNGTS_1585 [Synechocystis sp. PCC 6803]
gi|451814910|ref|YP_007451362.1| hypothetical protein MYO_116000 [Synechocystis sp. PCC 6803]
gi|1653245|dbj|BAA18160.1| sll1252 [Synechocystis sp. PCC 6803]
gi|339273846|dbj|BAK50333.1| hypothetical protein SYNGTS_1585 [Synechocystis sp. PCC 6803]
gi|359271813|dbj|BAL29332.1| hypothetical protein SYNGTI_1585 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|359274983|dbj|BAL32501.1| hypothetical protein SYNPCCN_1584 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|359278153|dbj|BAL35670.1| hypothetical protein SYNPCCP_1584 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|407958671|dbj|BAM51911.1| hypothetical protein BEST7613_2980 [Bacillus subtilis BEST7613]
gi|451780879|gb|AGF51848.1| hypothetical protein MYO_116000 [Synechocystis sp. PCC 6803]
Length = 259
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 97/216 (44%), Positives = 137/216 (63%), Gaps = 8/216 (3%)
Query: 68 LLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQG 127
LLKG D+ AI +++ A +A EV+ SDF PP++ E + L ++ + G
Sbjct: 7 LLKGAPDREAI---ARVIDQAEQALRTWEVVVSDFCAPPLIAEIQTRFDSLTELHFLPWG 63
Query: 128 GYPQAERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 186
GYPQAER RL++ E L ++ + AL + GNF F P SH DFLG++LGTG+ REK+G
Sbjct: 64 GYPQAERQRLAIARAEIPLETEQIPLTALDVAGNFLFDPASHRDFLGALLGTGLVREKVG 123
Query: 187 DIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEAS 246
DIIL GE+GAQ +VVPE+A+++ L +V V V I L L+ PP+TK T+EAS
Sbjct: 124 DIILLGERGAQAIVVPEVAEFISLHLTQVRTVPVKAKAIALEELKIRPPKTKEMTTVEAS 183
Query: 247 LRVDALASAGFKLSRSKLVNLIRYSSLASLVQISAK 282
LR+DA+ASAGF LSRSK+ + + + VQ++ K
Sbjct: 184 LRLDAIASAGFGLSRSKMADAVTQGN----VQVNWK 215
>gi|428769447|ref|YP_007161237.1| photosystem II S4 domain-containing protein [Cyanobacterium
aponinum PCC 10605]
gi|428683726|gb|AFZ53193.1| photosystem II S4 domain protein [Cyanobacterium aponinum PCC
10605]
Length = 259
Score = 176 bits (447), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 94/204 (46%), Positives = 133/204 (65%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLK V +K E++ +++ A +A E++ +DFL+PPVL E L +VK V
Sbjct: 5 EELLKRVENK---EDIARVIDKAEKAVKTWELVVTDFLSPPVLAEVNEIFASLTEVKIVC 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER R+ + E +I + AL + GNF F +H DFLG+ILGTGI R+K
Sbjct: 62 WGGYPQAERQRVGIHREEVYAGVAEIPLMALDVAGNFLFDTATHRDFLGAILGTGIVRDK 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
IGDII+ GE+GAQ +V PE+ ++L TSL +V +V V +I L L+ PP+ K T+E
Sbjct: 122 IGDIIVLGERGAQVIVTPEIGEFLETSLTQVRSVPVKTGKIDLSDLKIRPPKKKEMTTVE 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
ASLR+DA+AS GF +SRSK+ + I
Sbjct: 182 ASLRLDAIASFGFGISRSKMADAI 205
>gi|56752497|ref|YP_173198.1| hypothetical protein syc2488_d [Synechococcus elongatus PCC 6301]
gi|56687456|dbj|BAD80678.1| hypothetical protein [Synechococcus elongatus PCC 6301]
Length = 259
Score = 176 bits (447), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 95/203 (46%), Positives = 133/203 (65%), Gaps = 4/203 (1%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
DL G +++ + ++++A ++ E SDFL+PP L E+ L +L +++ +
Sbjct: 6 DLPAGADNRDCL---ARLIDLAEQSIRTWEPAISDFLSPPELAEAQERLGRLTELQLLPW 62
Query: 127 GGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
GGYPQAER RL++ E L D +AA+ I GNF F P SH DFLGS+LGTG+ REK+
Sbjct: 63 GGYPQAERQRLAIARSEMPLDVDQIAIAAVEIAGNFLFDPASHRDFLGSLLGTGLVREKV 122
Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
GDI++ G++GAQ LV+PEL ++L L +V +V V IPL L PR K T+EA
Sbjct: 123 GDILVLGDRGAQALVMPELVEFLGLQLTQVRSVPVKVREIPLAELRIPAPRIKQLTTVEA 182
Query: 246 SLRVDALASAGFKLSRSKLVNLI 268
SLR+DA+ASAGF LSRSK+V+LI
Sbjct: 183 SLRLDAIASAGFGLSRSKMVDLI 205
>gi|443312798|ref|ZP_21042413.1| photosystem II S4 domain protein [Synechocystis sp. PCC 7509]
gi|442777254|gb|ELR87532.1| photosystem II S4 domain protein [Synechocystis sp. PCC 7509]
Length = 259
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 94/204 (46%), Positives = 135/204 (66%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
+++LKGV ++++I +++ A +A EV+ +DFL+PP L E +L +V+ +A
Sbjct: 5 EEILKGVENRDSI---ARVIDRAEQAIKTWEVVLTDFLSPPELAELQKVFSRLTEVQLLA 61
Query: 126 QGGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGY QAER RL+V E L + AL I GNF F +H DFLG++LGTGI REK
Sbjct: 62 WGGYEQAERQRLAVARSEMPLERHQVELVALEIAGNFLFDTATHRDFLGAMLGTGIVREK 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
GD+I+ GE+GAQ +V PE+A++L SL++V +V V RI L L+ P+ K T+E
Sbjct: 122 TGDVIVLGERGAQAIVTPEIAEFLEMSLQQVRSVPVKTQRIDLSELKIREPKKKESTTVE 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
ASLR+DA+ASAGF +SRSK+ +LI
Sbjct: 182 ASLRLDAIASAGFGMSRSKMSDLI 205
>gi|427720370|ref|YP_007068364.1| photosystem II S4 domain-containing protein [Calothrix sp. PCC
7507]
gi|427352806|gb|AFY35530.1| photosystem II S4 domain protein [Calothrix sp. PCC 7507]
Length = 259
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/205 (45%), Positives = 133/205 (64%), Gaps = 6/205 (2%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLK V ++++I +++ A +A EV+ +DFL+PP L E +L +V+ V
Sbjct: 5 EELLKSVENRDSI---ARVIDQAEQAIKTWEVVLTDFLSPPELAEIQRVFSRLTEVQLVT 61
Query: 126 QGGYPQAERCRLSVGHPEA--LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIARE 183
GGYPQAER R+++ E S D+V L I GNF F SH DFLG++LGTGI RE
Sbjct: 62 WGGYPQAERQRIAIARAEMPLDQSQVDLVL-LEIAGNFLFDTASHRDFLGAMLGTGIVRE 120
Query: 184 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTI 243
K GDI++ GE+GAQ +V P+L ++L SL +V +V V RI L+ P+ K T+
Sbjct: 121 KTGDIVVLGERGAQAIVAPDLVEFLEMSLNQVRSVPVKTRRIDFSELKVREPKKKELTTV 180
Query: 244 EASLRVDALASAGFKLSRSKLVNLI 268
EASLR+DA+ASAGF +SRSK+V+LI
Sbjct: 181 EASLRLDAIASAGFGMSRSKMVDLI 205
>gi|443314925|ref|ZP_21044448.1| photosystem II S4 domain protein [Leptolyngbya sp. PCC 6406]
gi|442785487|gb|ELR95304.1| photosystem II S4 domain protein [Leptolyngbya sp. PCC 6406]
Length = 276
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 96/204 (47%), Positives = 133/204 (65%), Gaps = 6/204 (2%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
DLLK V K+A+ +L+ A +A EV+ +DFL+PP L E+ ++L +V+ +A
Sbjct: 23 DLLKAVDHKDAL---TRLLDQADQAIRTWEVVVTDFLSPPELVEAQSLFQRLTEVQFIAS 79
Query: 127 GGYPQAERCRLSVGHPEALTSDPDIV--AALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER R ++ E L DP + + I GNF F +H DFLG++LGTG+ REK
Sbjct: 80 GGYPQAERQRGAIARAE-LPLDPSQIPLTLVDIAGNFLFDTATHRDFLGALLGTGLVREK 138
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
+GDII+ GE+GAQ ++VPEL D+L SL +V +V V I L P+ K T+E
Sbjct: 139 VGDIIVLGERGAQAIMVPELVDFLTLSLTQVRSVPVKTRPIDWQELRVREPKKKELTTVE 198
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
ASLR+DA+ASAGF +SRSK+V+LI
Sbjct: 199 ASLRLDAVASAGFGMSRSKMVDLI 222
>gi|158337091|ref|YP_001518266.1| S4-like domain-containing protein [Acaryochloris marina MBIC11017]
gi|158307332|gb|ABW28949.1| uncharacterized conserved protein, contains S4-like domain
[Acaryochloris marina MBIC11017]
Length = 259
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 94/202 (46%), Positives = 129/202 (63%), Gaps = 4/202 (1%)
Query: 68 LLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQG 127
LL GV + + +L+ A +A EV+ S FL+PP L E+ L +V +A G
Sbjct: 7 LLNGVEHTDCM---SRLLDQATQALKTWEVVVSAFLSPPELAEAQQMFAPLTEVSILAWG 63
Query: 128 GYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 186
GYPQAER R+++ H + + +AALSI+GNF F P SH DFLG++LGTGI R+++G
Sbjct: 64 GYPQAERQRIAIAHSDLPLDQSQVELAALSISGNFLFDPASHRDFLGALLGTGIVRDQVG 123
Query: 187 DIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEAS 246
DI++ GE+GAQ + P+L +L T L +V V V IP L+ PR K T+EAS
Sbjct: 124 DILVLGERGAQAIASPQLVPFLQTHLTQVRTVPVQVEPIPFEQLKVREPRCKEMTTVEAS 183
Query: 247 LRVDALASAGFKLSRSKLVNLI 268
+R+DA+ASAGF LSRSK+VNLI
Sbjct: 184 MRLDAVASAGFGLSRSKMVNLI 205
>gi|359460617|ref|ZP_09249180.1| S4-like domain-containing protein [Acaryochloris sp. CCMEE 5410]
Length = 259
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 94/202 (46%), Positives = 129/202 (63%), Gaps = 4/202 (1%)
Query: 68 LLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQG 127
LL GV + + +L+ A +A EV+ S FL+PP L E+ L +V +A G
Sbjct: 7 LLNGVEHTDCM---SRLLDQATQALKTWEVVVSAFLSPPELAEAQQMFAPLTEVSILAWG 63
Query: 128 GYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 186
GYPQAER R+++ H + + +AALSI+GNF F P SH DFLG++LGTGI R+++G
Sbjct: 64 GYPQAERQRIAIAHSDLPLDQSQVDLAALSISGNFLFDPASHRDFLGALLGTGIVRDQVG 123
Query: 187 DIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEAS 246
DI++ GE+GAQ + P+L +L T L +V V V IP L+ PR K T+EAS
Sbjct: 124 DILVLGERGAQAIASPQLVPFLQTHLTQVRTVPVQVEPIPFEQLKVREPRCKEMTTVEAS 183
Query: 247 LRVDALASAGFKLSRSKLVNLI 268
+R+DA+ASAGF LSRSK+VNLI
Sbjct: 184 MRLDAVASAGFGLSRSKMVNLI 205
>gi|427420696|ref|ZP_18910879.1| photosystem II S4 domain protein [Leptolyngbya sp. PCC 7375]
gi|425756573|gb|EKU97427.1| photosystem II S4 domain protein [Leptolyngbya sp. PCC 7375]
Length = 259
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/204 (44%), Positives = 130/204 (63%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
DDLLKGV + E + +++ A ++ E + +DFL+PP L E+ +L D+
Sbjct: 5 DDLLKGVENT---ETLTRVIDQADQSIRTWEPVTTDFLSPPELYEAQAIFGRLTDIHTQV 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL++ E ++ +A LS+ GNF F +H DFLG++LGTGI REK
Sbjct: 62 HGGYPQAERQRLTIARTEIPLEGQELPLALLSVAGNFLFDTATHRDFLGALLGTGIVREK 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
+GDII+ GE+GAQ +VVPEL ++L SL +V +V V I L P+ K T+E
Sbjct: 122 VGDIIVLGERGAQLIVVPELVEFLEISLTQVRSVPVKTKPIDWSELRVREPKKKEITTVE 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
AS+R+DA+ASAGF +SRSK+ ++I
Sbjct: 182 ASMRLDAVASAGFGMSRSKMADMI 205
>gi|428777211|ref|YP_007168998.1| photosystem II S4 domain-containing protein [Halothece sp. PCC
7418]
gi|428691490|gb|AFZ44784.1| photosystem II S4 domain protein [Halothece sp. PCC 7418]
Length = 259
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 85/204 (41%), Positives = 132/204 (64%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
+++L+GV ++ EE+ ++++A +A E + +DFL+PPV E+ L +++ +
Sbjct: 5 EEILRGVENR---EEITRVIDIAEQAIKTWETVCTDFLSPPVAVEAQDKFSLLTEIQFMV 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER R+ + E + +AAL ++GNF F +H DFLG+ILGTG+ R+K
Sbjct: 62 WGGYPQAERVRMGITRAELPLDQSQVPIAALDVSGNFLFDTANHRDFLGAILGTGVVRQK 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
+GDI++ GE+GAQ LVVPEL +L +L +V +V V I L L+ PP+ K T+E
Sbjct: 122 VGDIVVLGERGAQILVVPELVSFLEANLNQVRSVPVKTREIGLEELKIRPPKKKEMTTVE 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
AS+R+DA+ SA F +SRSK+ + I
Sbjct: 182 ASMRLDAVGSAAFGMSRSKMASAI 205
>gi|443475431|ref|ZP_21065381.1| photosystem II S4 domain protein [Pseudanabaena biceps PCC 7429]
gi|443019738|gb|ELS33786.1| photosystem II S4 domain protein [Pseudanabaena biceps PCC 7429]
Length = 258
Score = 170 bits (430), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 93/204 (45%), Positives = 130/204 (63%), Gaps = 6/204 (2%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
DLL V +++ + +L++ RA EV+ SDFL+PP + E++ K+ ++ +A
Sbjct: 5 DLLNHVENRDTL---SRLLDLGDRAVQTWEVVCSDFLSPPEITEALQVFGKMTEIHCLAW 61
Query: 127 GGYPQAERCRLSVGHPEALTSDPDIVA--ALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGY QAER RL++ E L DP +V+ A+SI GNF F +H DFLG+ILGTGI R+K
Sbjct: 62 GGYEQAERQRLAIARSE-LPLDPSMVSLTAISIAGNFLFDTATHRDFLGAILGTGIERQK 120
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
+GD+ + GEKGAQ +VVPEL +YL +V V V I L+ P TK + E
Sbjct: 121 VGDVNVLGEKGAQAIVVPELVEYLQLHFNQVRTVPVKVNAIAWEELKIRIPVTKELTSTE 180
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
ASLR+DA+AS GF +SRSK+V+LI
Sbjct: 181 ASLRLDAIASFGFGMSRSKMVDLI 204
>gi|428772974|ref|YP_007164762.1| photosystem II S4 domain-containing protein [Cyanobacterium
stanieri PCC 7202]
gi|428687253|gb|AFZ47113.1| photosystem II S4 domain protein [Cyanobacterium stanieri PCC 7202]
Length = 259
Score = 170 bits (430), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 93/205 (45%), Positives = 132/205 (64%), Gaps = 6/205 (2%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
+D+L V ++ E+ +L+ A +A E++ +DFL+PPVL E +L +V+ +
Sbjct: 5 EDILNRVENR---AEIAKVLDKAEQAIKTWELVVTDFLSPPVLAEVNEIFAQLTEVQIIP 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIARE 183
GG+PQAER R+ + H E + D VAAL I GNF F +H DFLG+ILG G+ RE
Sbjct: 62 WGGFPQAERKRVGI-HREEIPCDVSQMPVAALDIAGNFLFDTATHRDFLGAILGAGVVRE 120
Query: 184 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTI 243
K+GDII+ GE+GAQ +V PE+ D+ +SL +V +V V RI L L+ P+ K T+
Sbjct: 121 KVGDIIVLGERGAQVVVNPEMVDFFESSLVQVRSVPVKTKRIELSDLKVREPKKKEMTTV 180
Query: 244 EASLRVDALASAGFKLSRSKLVNLI 268
EASLR+DA+AS GF LSRSK+V+ I
Sbjct: 181 EASLRLDAIASYGFGLSRSKMVDAI 205
>gi|443320974|ref|ZP_21050044.1| photosystem II S4 domain protein [Gloeocapsa sp. PCC 73106]
gi|442789300|gb|ELR98963.1| photosystem II S4 domain protein [Gloeocapsa sp. PCC 73106]
Length = 259
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 93/204 (45%), Positives = 137/204 (67%), Gaps = 6/204 (2%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
++LK V ++ EE+ IL+++ +A ++ +DFL+P +L E++ L ++ +A
Sbjct: 6 EILKRVENR---EEIARILDLSEQAWKTWSIVLTDFLSPTILVEALPLFTDLTELHCLAW 62
Query: 127 GGYPQAERCRLSVGHPEALTSDPDIV--AALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL +G E + D ++V A L I GNF F +H DFLG+ILGTGI R+K
Sbjct: 63 GGYPQAERQRLGLGRTE-VPIDTEVVELAVLKIEGNFLFDVATHRDFLGAILGTGIVRDK 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
IGDII+ GE+GAQ +VVPE+ D+L ++ +V +VSV I + L+ P +TK +T+E
Sbjct: 122 IGDIIVLGERGAQVIVVPEMVDFLCGTVVQVRSVSVQTKPIAVGELKITPAKTKEIQTVE 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
AS+R+DA+ASAGF LSRSK+ I
Sbjct: 182 ASMRLDAIASAGFGLSRSKMAEAI 205
>gi|37519960|ref|NP_923337.1| hypothetical protein gll0391 [Gloeobacter violaceus PCC 7421]
gi|35210952|dbj|BAC88332.1| gll0391 [Gloeobacter violaceus PCC 7421]
Length = 262
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 93/204 (45%), Positives = 125/204 (61%), Gaps = 4/204 (1%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLK ++A+ V + E A R S V+ SDF +PP + E + +L +V A A
Sbjct: 8 EELLKRAEHRDALARVLDLAETALRDWS---VVTSDFYSPPEVGECLDVFSRLVEVHAAA 64
Query: 126 QGGYPQAERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGY QAER R++V A+ + +AA+ I GNF F SH DFLG+ILGTGI R K
Sbjct: 65 WGGYSQAERQRIAVSRDNIAIETAAIPLAAVDIRGNFLFDAASHRDFLGAILGTGIVRGK 124
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
+GDI++ G++GAQ LV PEL +L TSL V V V I L PP+TK ++E
Sbjct: 125 VGDILVLGDRGAQTLVAPELVPFLQTSLTSVRTVPVQVVPIGFEELRIRPPQTKEITSVE 184
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
ASLR+DA+ SAGF LSR+K+V I
Sbjct: 185 ASLRIDAIGSAGFGLSRNKMVESI 208
>gi|303285910|ref|XP_003062245.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456656|gb|EEH53957.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 244
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/188 (44%), Positives = 122/188 (64%), Gaps = 3/188 (1%)
Query: 84 ILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
I E A AS V + FL P + +++ + ++ADV A GGY +AER RL +G E
Sbjct: 3 IAERAEAASDAWSVHVTPFLDPALAADALAVVGRMADVDARPWGGYDRAERVRLVIGRAE 62
Query: 144 ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE 203
L + P V+A ++GNF F H DFLG++LGTGI R+++GDI++QGE+GAQ L PE
Sbjct: 63 VLDAPPACVSAYKLSGNFMFDAADHRDFLGAVLGTGIERDRVGDILVQGERGAQVLATPE 122
Query: 204 LADYLIT---SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLS 260
+A +L +L V +V V+C PL L PPR +F ++EAS+R+DA+ASAGF++S
Sbjct: 123 MATFLSQARPALTSVRSVPVACAAAPLSDLRVPPPRVDAFNSVEASMRLDAIASAGFRMS 182
Query: 261 RSKLVNLI 268
RSK+ +L+
Sbjct: 183 RSKMSDLV 190
>gi|255081170|ref|XP_002507807.1| predicted protein [Micromonas sp. RCC299]
gi|226523083|gb|ACO69065.1| predicted protein [Micromonas sp. RCC299]
Length = 311
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 86/213 (40%), Positives = 127/213 (59%), Gaps = 13/213 (6%)
Query: 68 LLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQG 127
LL GV +I V I E A+ AS R ++FL P + ++ + ++++AD +A G
Sbjct: 46 LLSGV-HPESIAAVSAIAERAQAASDRWGTEVTEFLDPALAADARVVIDRMADCEARPWG 104
Query: 128 GYPQAERCRLSVGHPEALTSDPD------------IVAALSITGNFGFQPCSHGDFLGSI 175
GY +AER RL +G E L D D VA L ++GNF F H DFLG+
Sbjct: 105 GYDRAERVRLVIGRREVLDGDGDDSFAALTDATNGCVALLQVSGNFMFDAADHRDFLGAA 164
Query: 176 LGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPP 235
LG GI R+++GDI++QGE+GAQ L +A +L +++ V V V+ + PL L PP
Sbjct: 165 LGAGIERDRLGDILVQGERGAQILATRPMAAFLSSAMTSVRKVPVATSIAPLTDLRVPPP 224
Query: 236 RTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
R +F ++E S+R+DA+ASAGF++SRSK+ +LI
Sbjct: 225 RVDTFASVEKSMRLDAVASAGFRMSRSKMSDLI 257
>gi|422293742|gb|EKU21042.1| rna-binding s4 [Nannochloropsis gaditana CCMP526]
Length = 325
Score = 153 bits (386), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 84/192 (43%), Positives = 120/192 (62%), Gaps = 8/192 (4%)
Query: 85 LEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL------- 137
+E A +A S E+ DF PP + L ++AD+ GG+PQAER R+
Sbjct: 80 VEAADKAVSIWEMQVIDFCRPPEVATMTRVLGRVADLSITCDGGFPQAERQRVFFSRALD 139
Query: 138 -SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
+V +A +AA+S+ GNF F +H DFLG++LGTGIAREK+GDI+LQGE+GA
Sbjct: 140 YAVDEEDARKERGGYLAAISVEGNFIFDRATHRDFLGALLGTGIAREKVGDILLQGERGA 199
Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
+V P++A+Y++ SL V +V V I L L PP TK +++EAS+R+DA+ASAG
Sbjct: 200 HVVVAPDVAEYVVLSLAAVRSVPVKNKPIALADLGVRPPVTKEMQSVEASMRLDAVASAG 259
Query: 257 FKLSRSKLVNLI 268
+SRSKL ++I
Sbjct: 260 MGMSRSKLKDMI 271
>gi|308805044|ref|XP_003079834.1| unnamed protein product [Ostreococcus tauri]
gi|116058291|emb|CAL53480.1| unnamed protein product [Ostreococcus tauri]
Length = 306
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 113/192 (58%), Gaps = 5/192 (2%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALE-KLADVKAVAQ-GGYPQAERCR 136
E V +E RA R V ++F+ P + + ++ + D A+ Q GG+ AER R
Sbjct: 57 ETVSRAIERGERALERWSVETTEFMDPGAMTSVVSSVRARFGDEVAIEQWGGFSAAERRR 116
Query: 137 LSVGHPEALTSDPDI---VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGE 193
++ E SD ++ V L ++GNF F +H DFLG+ILGTGI RE++GDI++ GE
Sbjct: 117 ATISRSETPASDEEVRANVKVLRVSGNFMFDAATHRDFLGAILGTGIKRERVGDIVVTGE 176
Query: 194 KGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALA 253
+GA +V PE+ ++L T+L V V V + L+ P+T+ +T E+S R+DA+
Sbjct: 177 RGADVMVTPEMCEFLSTALTSVRTVKVEAREVDASELKVPEPKTEEMQTSESSTRLDAIG 236
Query: 254 SAGFKLSRSKLV 265
SAGF++SRSK +
Sbjct: 237 SAGFRMSRSKFM 248
>gi|22299704|ref|NP_682951.1| hypothetical protein tlr2161 [Thermosynechococcus elongatus BP-1]
gi|22295888|dbj|BAC09713.1| tlr2161 [Thermosynechococcus elongatus BP-1]
Length = 243
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 105/173 (60%), Gaps = 1/173 (0%)
Query: 97 VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE-ALTSDPDIVAAL 155
V+H+ FL P + E++ LE+ ADV +A GGYPQAERCRL++ E L +A
Sbjct: 17 VVHTLFLPPDRVVEALGVLEQRADVHGLAWGGYPQAERCRLAIAPVELPLEGQQPPLALG 76
Query: 156 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 215
ITGNF F P ++ DF G+I G+ GD+IL GE+GAQ +++PE L L++V
Sbjct: 77 RITGNFLFDPATYSDFEGAIASVGLDEGDYGDVILLGERGAQVILIPEKVSTLQKELKQV 136
Query: 216 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
V V+ L PP+ KS T+EASLR+DA+ASAGF +SRSK+ I
Sbjct: 137 RTVPVTVDLCDWSELAVAPPQRKSLSTVEASLRLDAVASAGFGVSRSKMSEWI 189
>gi|427711215|ref|YP_007059839.1| photosystem II S4 domain-containing protein [Synechococcus sp. PCC
6312]
gi|427375344|gb|AFY59296.1| photosystem II S4 domain protein [Synechococcus sp. PCC 6312]
Length = 258
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 116/191 (60%), Gaps = 2/191 (1%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
+ +K IL + +A EV+ +DFL P V E++ AL +L D+ A GGYPQAER R+
Sbjct: 15 QALKQILNQSEQAFKTWEVVVTDFLDPLVRLEAIAALNQLTDLHYQAWGGYPQAERQRMV 74
Query: 139 VGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
+ + +I + +I GNF F P + DF +++ GI ++IGDIIL G++GAQ
Sbjct: 75 LARTDIPLDQSNIGLELWAIAGNFLFDPPTDTDFHQALIMAGIPTDQIGDIILLGDRGAQ 134
Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
++VP L D + +++V V V+ L PP+ K+ T+EASLR+DALASAGF
Sbjct: 135 VILVPGL-DISLGQVKQVRTVPVNAQPQAWQELRVRPPQIKTLTTVEASLRLDALASAGF 193
Query: 258 KLSRSKLVNLI 268
+SRSK+V +I
Sbjct: 194 GMSRSKMVEMI 204
>gi|145348001|ref|XP_001418446.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578675|gb|ABO96739.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 303
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 109/189 (57%), Gaps = 4/189 (2%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA--DVKAVAQGGYPQAERCRLS 138
VK +E A R R V +FL P L A+ + +V+ A GG+ AER R +
Sbjct: 57 VKRAVERAERVRDRWTVETIEFLDPGALHSVENAVRAVCGDEVEVRAWGGFASAERRRAT 116
Query: 139 VGHPEALTSDP--DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
+ +++ + D V L + GNF F +H DFLG+ILGTGI REK+GDI++ GE+GA
Sbjct: 117 IARADSVDEEEIRDTVRVLRVQGNFMFDAATHRDFLGAILGTGIKREKVGDIVVTGERGA 176
Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
+V PE+A++L T+L V V V + L+ P+ + + E+S R+DAL SAG
Sbjct: 177 DVMVSPEMAEFLSTALTSVRTVKVEAREVDASELKVPEPKVEDIFSSESSTRLDALGSAG 236
Query: 257 FKLSRSKLV 265
F++SRSK V
Sbjct: 237 FRMSRSKFV 245
>gi|449017158|dbj|BAM80560.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
10D]
Length = 340
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 83/220 (37%), Positives = 134/220 (60%), Gaps = 17/220 (7%)
Query: 66 DDLLKGVGDKNAIEEVK-HILEMARRASSRREVLHSDF-LTPPVLKESMMALEKLADVKA 123
D +LK + EEV ++++A +A+ +V+ +DF L P L ALE LA V
Sbjct: 69 DKVLKTLQTVQVAEEVAVRLVDLAIKATKNYQVVATDFFLRPNELHGMKQALESLAFVGV 128
Query: 124 VAQGGYPQAERCRLSVGHPEALTSDPDI------------VAALSITGNFGFQPCSHGDF 171
+ GGY AER +++ +P+ P+ + AL + GNF F SH DF
Sbjct: 129 TSSGGYAAAER-QIAAFYPKDFAPTPEQEQQVATTHCESQLLALELAGNFIFDRASHSDF 187
Query: 172 LGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLA- 229
LG+++G +G+ RE+ GDII+ G++GAQ +V+ A+ + +S++ V +V+V ++ LA
Sbjct: 188 LGALIGCSGLRRERFGDIIILGDRGAQVVVLKNDAETIRSSVKMVRSVTVRTRQLGSLAE 247
Query: 230 LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIR 269
LE +PPRTK+ ++EASLR+DA+ SAGF +SR+K+V +I+
Sbjct: 248 LEVQPPRTKTLTSVEASLRLDAVGSAGFGMSRTKMVEMIK 287
>gi|435853593|ref|YP_007314912.1| photosystem II S4 domain protein [Halobacteroides halobius DSM
5150]
gi|433670004|gb|AGB40819.1| photosystem II S4 domain protein [Halobacteroides halobius DSM
5150]
Length = 261
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 121/217 (55%), Gaps = 15/217 (6%)
Query: 64 NFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKA 123
N + LL + K A V IL+ A A + +DFL P L + L ++ D+K
Sbjct: 3 NKEKLLSHLDSKEA-SNVDKILDKAELALIDHKPTFTDFLNPRQLYIAKPVLAQIRDLKY 61
Query: 124 VAQGGYPQAERCRLSVGHPEALTSD---PDIV----AALSITGNFGFQPCSHGDFLGSIL 176
+ GGY +AER L AL D PD++ L+ITG F FQ SH DFLG+IL
Sbjct: 62 LEYGGYNKAERKML------ALVPDYYIPDMIDPPLTVLNITGQFKFQQVSHRDFLGAIL 115
Query: 177 GTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPR 236
GTGI R+K+GD++L +KG Q ++ ++ D+++ +LE+V + V I L EP R
Sbjct: 116 GTGIKRKKVGDLVLY-KKGCQAIIAEQIKDFIMLNLEQVHQIGVQVEEISTTELRIEPQR 174
Query: 237 TKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSL 273
TK + ASLR+D++AS+GF SRSK+ I S+
Sbjct: 175 TKEIRDTVASLRLDSVASSGFSTSRSKMSKQIEKGSV 211
>gi|302391658|ref|YP_003827478.1| RNA-binding S4 domain-containing protein [Acetohalobium arabaticum
DSM 5501]
gi|302203735|gb|ADL12413.1| RNA-binding S4 domain protein [Acetohalobium arabaticum DSM 5501]
Length = 264
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/210 (36%), Positives = 120/210 (57%), Gaps = 8/210 (3%)
Query: 64 NFDDLLKGVGDKNAIEEVK--HILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADV 121
N + L+ + K+ EE+ +L+ AR A + E ++FL P + L+++ D+
Sbjct: 3 NREKFLRYIKAKDEEEELTAAKVLDKAREALQKHEPTFTNFLNPYQRELLTSILDQIYDL 62
Query: 122 KAVAQGGYPQAERCRLSV---GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT 178
K + GG+ +AER R+ + + + +P + I+GNF F SH DFLG+ILGT
Sbjct: 63 KYLLYGGFERAERKRIGLMPDYYMREIVDNP--LTIFEISGNFNFASVSHRDFLGAILGT 120
Query: 179 GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK 238
GI RE +GD+I+ +K Q +V E+ DYL+ +L++V NV V I LE EP K
Sbjct: 121 GIKREVVGDLIVSSDK-CQVIVAEEIKDYLLFNLKRVHNVPVEVEEIDAEKLEVEPEHVK 179
Query: 239 SFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+ ASLR+D++AS+GF SR+K+ I
Sbjct: 180 EIKSTVASLRLDSVASSGFSTSRTKMAREI 209
>gi|225181688|ref|ZP_03735128.1| RNA-binding S4 domain protein [Dethiobacter alkaliphilus AHT 1]
gi|225167669|gb|EEG76480.1| RNA-binding S4 domain protein [Dethiobacter alkaliphilus AHT 1]
Length = 261
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 109/188 (57%), Gaps = 4/188 (2%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIV--AALSI 157
+DFL P + + L DVK+V GGYP+AER RL V +P +D + V A + +
Sbjct: 38 TDFLDPFQQRTADRVLHLFKDVKSVTWGGYPEAERARLLV-YPSQRQADKESVPLAFIEV 96
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
+ +H D+LG++LG G+ REK+GDI+L GE AQ +V PE+ +L+T+ +VG
Sbjct: 97 EAHKA-DGLTHRDYLGAVLGLGLRREKLGDILLIGESKAQLVVHPEILSFLLTNWGEVGK 155
Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSLASLV 277
SVS I L PPR + KT ASLR+D++ASAGF +SRSKL ++ +
Sbjct: 156 YSVSVKEITADELAPTPPRVREIKTTVASLRLDSVASAGFGMSRSKLSPAVKSGQIKLNW 215
Query: 278 QISAKASA 285
Q ASA
Sbjct: 216 QSVTSASA 223
>gi|296133619|ref|YP_003640866.1| RNA-binding S4 domain-containing protein [Thermincola potens JR]
gi|296032197|gb|ADG82965.1| RNA-binding S4 domain protein [Thermincola potens JR]
Length = 260
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 110/191 (57%), Gaps = 10/191 (5%)
Query: 83 HILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA---QGGYPQAERCRLSV 139
I++ A+ A + + SDFL P + +MA + ++ + + GGY AER R+ +
Sbjct: 20 KIIDKAQSALKIYQPVFSDFLDPG---QQVMAKKLVSGIYGLTWKFDGGYDSAERKRMII 76
Query: 140 GHPEALTSD--PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
PE L+ P+ + L + GNF F+ +H DFLG++L TGI REK+GDII+ + G Q
Sbjct: 77 -FPEDLSWGEIPECICCLQVAGNFRFRKATHRDFLGAVLNTGIRREKLGDIIVV-DDGCQ 134
Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
+VVPE+ DYL +L K+ V V T I L TK T +SLR+DA+A AGF
Sbjct: 135 LIVVPEIKDYLAQNLFKIHQVPVKVTEISREELISPADNTKIIDTTVSSLRLDAVAGAGF 194
Query: 258 KLSRSKLVNLI 268
+SRSK+V I
Sbjct: 195 GISRSKIVKYI 205
>gi|87123642|ref|ZP_01079492.1| hypothetical protein RS9917_08541 [Synechococcus sp. RS9917]
gi|86168211|gb|EAQ69468.1| hypothetical protein RS9917_08541 [Synechococcus sp. RS9917]
Length = 264
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 114/214 (53%), Gaps = 10/214 (4%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
+LL+G + E+++ +L+ A + S FL P+ +E+ L ++ +
Sbjct: 6 ELLQGARHR---EDLERLLDQAEAVLRTWQPQWSPFLEAPLQEEAFDRFSSLTELSWQRE 62
Query: 127 GGYPQAERCRLSVGH------PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGI 180
GGYP AERCRL P + T +P + L++ GNF F P D ++ G
Sbjct: 63 GGYPGAERCRLLCQRRDPDLDPSSETQEPAPIVGLTVEGNFLFDPIVPADIRRALAPLGA 122
Query: 181 AREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT-KS 239
A E++GD+ ++G++GAQ L PE AD L ++ +V + C +P+ L+ R K
Sbjct: 123 APEQLGDVWIRGDRGAQLLCTPEAADRLNGRKGRLRDVEIHCETVPIDGLQLPVRRAIKR 182
Query: 240 FKTIEASLRVDALASAGFKLSRSKLVNLIRYSSL 273
F ++EAS R+DA+ASAGF LSRSK+ IR L
Sbjct: 183 FSSVEASCRLDAIASAGFGLSRSKVSQEIRSGQL 216
>gi|87301211|ref|ZP_01084052.1| RNA-binding S4 [Synechococcus sp. WH 5701]
gi|87284179|gb|EAQ76132.1| RNA-binding S4 [Synechococcus sp. WH 5701]
Length = 264
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 119/210 (56%), Gaps = 7/210 (3%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
DLL+G D A+E ++ +A A + S FL+ +E+M L L+++ A+
Sbjct: 9 DLLRGSRDPAALEP---LIVLADHALRDWQPHWSGFLSALAWEEAMERLGSLSELHLEAE 65
Query: 127 GGYPQAERCRLSVGHPE-ALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIARE 183
GG PQAERCRL + + A S P +A L ++GNF F P GD +L G
Sbjct: 66 GGRPQAERCRLLLQRRDLAAGSTPPTAPLAGLEVSGNFLFDPAEPGDVRAGLLAAGALDG 125
Query: 184 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEP-PRTKSFKT 242
++GD+ L+G++GAQ +V P+LA L + +V +V V L L+ P+ + T
Sbjct: 126 ELGDLWLRGDRGAQVIVDPQLAARLGGTTARVRSVEVKLEARGLDQLQPPTRPQPRQLAT 185
Query: 243 IEASLRVDALASAGFKLSRSKLVNLIRYSS 272
+EASLR+DA+ASAGF LSRS++ +L+R +
Sbjct: 186 VEASLRLDAVASAGFGLSRSRMADLVRRGA 215
>gi|150390561|ref|YP_001320610.1| RNA-binding S4 domain-containing protein [Alkaliphilus
metalliredigens QYMF]
gi|149950423|gb|ABR48951.1| RNA-binding S4 domain protein [Alkaliphilus metalliredigens QYMF]
Length = 262
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 109/201 (54%), Gaps = 2/201 (0%)
Query: 64 NFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKA 123
N D ++ + D+ +L+ + EV +++FLTP +K + L ++
Sbjct: 3 NRDQYIEHIQDEKLKLVAVKLLDKVEMVMRKHEVKYTNFLTPYEIKHMLAILNTFEEICF 62
Query: 124 VAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAR 182
A GG+ AER L + SD + +AA+ I + F H DFLG+ILG GI R
Sbjct: 63 FAIGGHEDAERKTLVIFQAYLDPSDIESPIAAIEIQSSTRFNQLMHRDFLGAILGLGIKR 122
Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 242
EKIGDI+LQ + Q ++ EL DY++ +L KVGN+SV I L ++ K +
Sbjct: 123 EKIGDILLQDDI-CQVVITTELRDYVLLNLVKVGNMSVKVREIELEEIKAPDKVYKEIRL 181
Query: 243 IEASLRVDALASAGFKLSRSK 263
ASLR+DA+ SAGFKLSRS+
Sbjct: 182 NVASLRLDAIVSAGFKLSRSE 202
>gi|374308765|ref|YP_005055196.1| S4 domain-containing protein [Filifactor alocis ATCC 35896]
gi|291167097|gb|EFE29143.1| S4 domain protein [Filifactor alocis ATCC 35896]
Length = 263
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 112/194 (57%), Gaps = 7/194 (3%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
E+V +L++ ++ EV HSDFLTP +E L + DV+ G Q+ER +S
Sbjct: 20 EKVLRVLDIVQQVLYTHEVKHSDFLTPYEQRELASVLNGIYDVRYSFDGMSEQSERKIVS 79
Query: 139 VGHPEAL-TSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
+ +P+ L S DI+ L ITGN F SH D+LGSILG G+ REKIGDI + + GA
Sbjct: 80 I-YPDYLEESCQDILVCLKITGNTQFSKLSHRDYLGSILGLGLRREKIGDIFVVKD-GAY 137
Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPL--LALEYEPPRTKSFKTIEASLRVDALASA 255
+ + +ADY+ LEKV NVSV R+ +AL + R F + +S+R+D++ +
Sbjct: 138 IVCLQSVADYICFHLEKVKNVSVKVNRVEKDEIALPKQEKRECEF--VVSSIRLDSIVAG 195
Query: 256 GFKLSRSKLVNLIR 269
F LSR+ +L++
Sbjct: 196 MFHLSRNDAKSLVQ 209
>gi|251797860|ref|YP_003012591.1| RNA-binding S4 domain-containing protein [Paenibacillus sp. JDR-2]
gi|247545486|gb|ACT02505.1| RNA-binding S4 domain protein [Paenibacillus sp. JDR-2]
Length = 257
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 108/191 (56%), Gaps = 6/191 (3%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V LE R++ E+ +DFL P + M + DV+ GGYP+AERCR +G
Sbjct: 17 VDRALEWVERSAQLHELKRTDFLDPRQAQILQMLANRNPDVQLRLAGGYPEAERCRAIIG 76
Query: 141 HPEA--LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
PE L +P ++ L++TG G HGD+LG++LG G+ R++IGDI + E +
Sbjct: 77 -PEYRYLDDEPIGLSVLAVTG--GGSELDHGDYLGALLGLGVKRDRIGDIHVH-EDYSHI 132
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
+V+ E+ADYL L +V SV IP L L+ P + AS+R+D +AS ++
Sbjct: 133 IVLDEIADYLNVHLRQVHRASVLTEIIPTLKLKPVVPALQEMSFTVASMRLDGIASDVYR 192
Query: 259 LSRSKLVNLIR 269
+SR+K+V+ IR
Sbjct: 193 ISRTKIVDPIR 203
>gi|116071266|ref|ZP_01468535.1| RNA-binding S4 [Synechococcus sp. BL107]
gi|116066671|gb|EAU72428.1| RNA-binding S4 [Synechococcus sp. BL107]
Length = 261
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 114/212 (53%), Gaps = 8/212 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
D+LL G D E +K ++++A + + S FL + +E++ L L+++
Sbjct: 6 DELLAGAEDP---EGLKRLIQLADQVVRTWQPAWSPFLGARLQEEALARLNNLSEIGWHR 62
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDIVA---ALSITGNFGFQPCSHGDFLGSILGTGIAR 182
GGYP AERCRL + H + D A L I GNF F P S D ++ G A
Sbjct: 63 DGGYPGAERCRL-LCHRRDQMGEADACAPAYGLLIEGNFLFDPLSPQDIRNALQELGAAP 121
Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT-KSFK 241
++IGD+ ++G++G Q L PE A L +V +V + C + + AL RT + +
Sbjct: 122 DQIGDLWVRGDRGGQGLCTPESAAQLHEQCGRVRDVDIRCEALAIEALHLPAQRTPRILQ 181
Query: 242 TIEASLRVDALASAGFKLSRSKLVNLIRYSSL 273
T+EAS R+DA+ASAGF LSR+K+V I+ L
Sbjct: 182 TVEASCRIDAIASAGFGLSRAKIVGHIKAGRL 213
>gi|318042231|ref|ZP_07974187.1| hypothetical protein SCB01_11007 [Synechococcus sp. CB0101]
Length = 263
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 120/221 (54%), Gaps = 11/221 (4%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
D LLKG +E+ ++++A +A E SDF+ + +E+ L L++V A
Sbjct: 5 DTLLKG---SRRPQELAGLIDLAEQALRTWEPCWSDFVDAELKEEAEARLGALSEVDLWA 61
Query: 126 QGGYPQAERCRLSVGHPEA--LTSDPDIVA---ALSITGNFGFQPCSHGDFLGSILGTGI 180
GG+PQAERCRL V + L P +A L ++GNF F P D + G+
Sbjct: 62 DGGWPQAERCRLLVRRADQADLVDAPAPLAEICGLVVSGNFLFDPAEPADVREGLRQAGL 121
Query: 181 AREKIGDIILQGEKGAQFLVVPELADYLITSLE-KVGNVSVSCTRIPLLALEYEPPRT-K 238
+GD+ ++G++GAQ L+ E A+ L E +V +V V +PL L++ R K
Sbjct: 122 QDSDLGDVWMRGDRGAQALIRKE-AEVLADQREAQVRSVPVQLQVVPLEQLQWPASRAPK 180
Query: 239 SFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSLASLVQI 279
++EASLR+DA+ASAG LSRS++ +LIR S+ Q+
Sbjct: 181 QLSSVEASLRLDAVASAGLGLSRSRMADLIRQGSVRVNWQV 221
>gi|78184102|ref|YP_376537.1| RNA-binding S4 [Synechococcus sp. CC9902]
gi|78168396|gb|ABB25493.1| RNA-binding S4 [Synechococcus sp. CC9902]
Length = 261
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 113/212 (53%), Gaps = 8/212 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LL G D + + ++++A + + S FL + +E++ L L+++
Sbjct: 6 EELLTGADDPAGL---RQLIQLADQVVRTWQPAWSPFLDARLQEEALERLSNLSEIGWHR 62
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDIVA---ALSITGNFGFQPCSHGDFLGSILGTGIAR 182
GGYP AERCR + + D D A L I GNF F P S D ++ G A
Sbjct: 63 DGGYPGAERCRFLCQRRDPI-GDADTCAPVQGLLIEGNFLFDPLSPEDIRNALQELGAAP 121
Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT-KSFK 241
++IGD+ ++G++G Q L PE A L +V +V + C +P+ AL RT + +
Sbjct: 122 DQIGDLWVRGDRGGQGLCTPESAARLHEQRGRVRDVEIRCEALPIEALHLPAQRTPRILQ 181
Query: 242 TIEASLRVDALASAGFKLSRSKLVNLIRYSSL 273
T+EAS R+DA+ASAGF LSR+K+V I+ L
Sbjct: 182 TVEASCRIDAIASAGFGLSRAKIVGHIKAGRL 213
>gi|78043754|ref|YP_360858.1| S4 domain-containing protein [Carboxydothermus hydrogenoformans
Z-2901]
gi|77995869|gb|ABB14768.1| S4 domain protein [Carboxydothermus hydrogenoformans Z-2901]
Length = 246
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 98/178 (55%), Gaps = 2/178 (1%)
Query: 92 SSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI 151
+++ +++ +DFL P + L +V GGYP AE+ R + D ++
Sbjct: 15 AAKGQIVLTDFLDPAAASLTRDLLRNYPEVNYKVDGGYPNAEKVRFAFYPIYVFPEDVEL 74
Query: 152 -VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLIT 210
+ + ITGNF FQ +H DFLG+ILGTGI REK+GD+IL G Q +V +L YLI
Sbjct: 75 NLGFIEITGNFKFQAVTHRDFLGAILGTGIKREKVGDLILI-PNGCQVVVDRDLVPYLIQ 133
Query: 211 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
L+KV V V+ I L +T+ SLR+D++ ++GF +SRS++V I
Sbjct: 134 QLDKVHRVGVTVKEIVREELLLPEAKTREVVAFVKSLRLDSVGASGFGISRSQMVKEI 191
>gi|158320443|ref|YP_001512950.1| RNA-binding S4 domain-containing protein [Alkaliphilus oremlandii
OhILAs]
gi|158140642|gb|ABW18954.1| RNA-binding S4 domain protein [Alkaliphilus oremlandii OhILAs]
Length = 262
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 117/207 (56%), Gaps = 13/207 (6%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
D ++ +G KN + + IL+ S + E+ +DFL P + + L + D++ V
Sbjct: 9 DHIQDLGLKNTMLK---ILDRVEAVSKKHEIKTTDFLNPQEIVMACEILHTVRDIQYVVS 65
Query: 127 GGYPQAERCRLSVGHPEALTS-DPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGY +AER +++ PE L +I +A I G F+ +H D+LG+ILG G+ REK
Sbjct: 66 GGYDEAERKLITI-FPEYLEGYGVEIPIAVFEIKGTSQFEKLNHRDYLGAILGLGLKREK 124
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
IGDII+ E +Q +V L DY+ +L KVGNVSV + + + PP+ + +K I
Sbjct: 125 IGDIIVHNEI-SQVIVHESLKDYIFYNLNKVGNVSVKIKELEISDI--IPPKIE-YKEIR 180
Query: 245 ---ASLRVDALASAGFKLSRSKLVNLI 268
+SLR+DA+ S +K+SRS+ LI
Sbjct: 181 GNVSSLRLDAILSLAYKISRSEAQELI 207
>gi|385799637|ref|YP_005836041.1| RNA-binding S4 domain-containing protein [Halanaerobium praevalens
DSM 2228]
gi|309389001|gb|ADO76881.1| RNA-binding S4 domain protein [Halanaerobium praevalens DSM 2228]
Length = 262
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 102/186 (54%), Gaps = 8/186 (4%)
Query: 83 HILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHP 142
HIL+ + + SDFL P +K ++ +E+LAD+ +GGY AER RL V P
Sbjct: 22 HILDKCAQVLKYHKTQASDFLNPYQMKIAIPLVEQLADINFKKEGGYQAAERKRLVV-FP 80
Query: 143 EALTSDPDIVAA----LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
E L PD+V + GNF FQ SH DFLG+++G G+ R+ IGD+++ + AQ
Sbjct: 81 EYLF--PDLVEKQIKIYQLAGNFAFQKLSHRDFLGALMGLGLKRKLIGDLLVHTD-FAQI 137
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
+V E+ D + LEKV V + I L K T AS+R+DA+AS+GF
Sbjct: 138 IVAAEIEDIIELKLEKVHQVPIKIKEIDESQLVSPTRYEKEILTTVASMRLDAVASSGFG 197
Query: 259 LSRSKL 264
SR+K+
Sbjct: 198 DSRTKM 203
>gi|113953560|ref|YP_731456.1| S4 domain-containing protein [Synechococcus sp. CC9311]
gi|113880911|gb|ABI45869.1| S4 domain protein [Synechococcus sp. CC9311]
Length = 259
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 105/178 (58%), Gaps = 7/178 (3%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI---VAALS 156
S FL+ +L+++ LE LA++K GGYP AER RL + H A + DP+ +A L+
Sbjct: 37 SPFLSALMLEDANQ-LESLAELKISRDGGYPGAERKRLLIQH--AASPDPEPHCPLAGLN 93
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
+ GNF F P S + ++ G+A E +GD+ ++G++GAQ + PE A L +
Sbjct: 94 VEGNFLFDPTSPDEMRLALHRIGVADESLGDLWIRGDRGAQAICTPEAAAVLQGQQGSLR 153
Query: 217 NVSVSCTRIPLLALEYEPPRT-KSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSL 273
V ++C +PL L++ R + ++EAS R+DA+ASAGF +SRSK+V I+ L
Sbjct: 154 EVIITCESLPLEGLQWPVQRVARRLSSVEASCRLDAIASAGFGISRSKVVKQIKEGRL 211
>gi|342214853|ref|ZP_08707524.1| S4 domain protein [Veillonella sp. oral taxon 780 str. F0422]
gi|341590384|gb|EGS33627.1| S4 domain protein [Veillonella sp. oral taxon 780 str. F0422]
Length = 261
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 116/206 (56%), Gaps = 5/206 (2%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
EE + ++++A + + R +DF++P L + + ++ GGY AER R++
Sbjct: 18 EEARRMIDLAEQVQAGRPYRVTDFMSPAGLVIADAVKANFGGINIISSGGYEGAERLRVA 77
Query: 139 VGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
P + +A L ++ + F+ +H D LGS++G GI R GDII+ GAQ
Sbjct: 78 FVDPHFQGTVDLQIAVLKVSWDPRFRLLTHRDVLGSLMGLGIDRTHFGDIIVT-SGGAQV 136
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
+V + D++I + K+ V+V+ +R+ L L+ + + K +T AS+R+D++AS+GF
Sbjct: 137 IVDATITDFVIQNFTKIAMVTVTVSRMELSELQPKEEKIKEVRTTVASMRLDSIASSGFS 196
Query: 259 LSRSKLVNLIRYSSLASLVQISAKAS 284
SR+K+V I+ A LVQ++ +++
Sbjct: 197 TSRTKVVEAIK----AGLVQVNWQSA 218
>gi|421860332|ref|ZP_16292463.1| uncharacterized conserved protein [Paenibacillus popilliae ATCC
14706]
gi|410830080|dbj|GAC42900.1| uncharacterized conserved protein [Paenibacillus popilliae ATCC
14706]
Length = 262
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 101/191 (52%), Gaps = 3/191 (1%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V E RRAS EV +DFL P + + + DV+ GG+ QAER R V
Sbjct: 19 VDRAWEWVRRASEGHEVKRTDFLDPRQAYITATLVNRCRDVQLRLDGGFAQAERKRALVA 78
Query: 141 HPEALTSDPDI-VAALSITG-NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
D+ ++ L IT + + HGDFLG++LG GI REKIGDI + ++
Sbjct: 79 PDYVYAEGEDVGISVLQITAPDRKWDELEHGDFLGALLGLGIKREKIGDIHISTDR-CHV 137
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
LV E+A ++ T L +V VSV +PL L+ K+ K ASLR+D +AS F+
Sbjct: 138 LVTEEMAPFVNTHLRQVHRVSVLTDILPLSELQAVEAEMKTAKLSVASLRLDGMASDVFR 197
Query: 259 LSRSKLVNLIR 269
LSR+K+V IR
Sbjct: 198 LSRTKIVAPIR 208
>gi|323702137|ref|ZP_08113804.1| RNA-binding S4 domain protein [Desulfotomaculum nigrificans DSM
574]
gi|333924457|ref|YP_004498037.1| RNA-binding S4 domain-containing protein [Desulfotomaculum
carboxydivorans CO-1-SRB]
gi|323532824|gb|EGB22696.1| RNA-binding S4 domain protein [Desulfotomaculum nigrificans DSM
574]
gi|333750018|gb|AEF95125.1| RNA-binding S4 domain protein [Desulfotomaculum carboxydivorans
CO-1-SRB]
Length = 263
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 91/152 (59%), Gaps = 4/152 (2%)
Query: 115 LEKLADVKAVAQGGYPQAERCRLSVGHPEAL-TSDPDI-VAALSITGNFGFQPCSHGDFL 172
LE++ D+ GGYP AER R+++ P+ L SD + + L++ GNF +H DFL
Sbjct: 55 LERIPDLDFATGGGYPAAERVRVAI-FPDYLDASDINFDLMLLAVEGNFKMVKVTHRDFL 113
Query: 173 GSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEY 232
GSILG GI RE IGD+I+ EKG Q + E+A YL+T+L KV V V+ I +
Sbjct: 114 GSILGLGIKREMIGDVIVT-EKGCQVVAAREVASYLMTNLTKVHRVGVAVREIAPEEWQM 172
Query: 233 EPPRTKSFKTIEASLRVDALASAGFKLSRSKL 264
K K+ ASLR+DA+A+ GF SR+++
Sbjct: 173 PEVTVKEIKSTVASLRLDAVAAVGFGTSRTRI 204
>gi|33240887|ref|NP_875829.1| RNA-binding protein [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
gi|33238416|gb|AAQ00482.1| RNA-binding protein, contains S4-like domain [Prochlorococcus
marinus subsp. marinus str. CCMP1375]
Length = 262
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 97/176 (55%), Gaps = 4/176 (2%)
Query: 98 LHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCR--LSVGHPEALTSDPDI-VAA 154
+ + FL+ PV +E +++AD+ + GGYP AER R L E +D ++ + A
Sbjct: 35 IWTSFLSAPVQEEIKNVFKEIADISYSSNGGYPNAERKRILLQRQQNETFLNDENVPIKA 94
Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 214
+ I GNF F DF SI TG+ E+IGD+ + G++GAQ + PE L +
Sbjct: 95 IKIEGNFLFDRTEPEDFRQSIAETGVKAEEIGDLWITGDRGAQAMCTPEALKLLQNNQGF 154
Query: 215 VGNVSVSCTRIPLLALEYEPPRT-KSFKTIEASLRVDALASAGFKLSRSKLVNLIR 269
+ +V + I L L R K ++EAS R+DA+ASAGF +SR+K+++ IR
Sbjct: 155 IRDVEIKYKSIDLTDLRIPFQRNPKKITSVEASKRLDAIASAGFGISRAKIISQIR 210
>gi|260436697|ref|ZP_05790667.1| photosystem II S4 domain protein [Synechococcus sp. WH 8109]
gi|260414571|gb|EEX07867.1| photosystem II S4 domain protein [Synechococcus sp. WH 8109]
Length = 258
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 98/175 (56%), Gaps = 1/175 (0%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITG 159
S FL+ P+ +E++ L L+++ ++ GGYP AER RL + L I G
Sbjct: 36 SPFLSAPLREEALARLGNLSELTWISDGGYPDAERQRLLCHRRDDSPDSGAPTQGLLIEG 95
Query: 160 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 219
NF F P S D ++ G+ +KIGD+ ++G++G Q + P A+ L L V V
Sbjct: 96 NFLFDPLSPDDLREALQLMGVNADKIGDLWVRGDRGGQGVCTPSAAEALHGRLGAVRKVE 155
Query: 220 VSCTRIPLLALEYEPPRT-KSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSL 273
+ C +P+ L+ R+ ++ +T+EAS R+DA+ASAGF LSR+K+V ++ L
Sbjct: 156 IRCESLPIEQLQQPVKRSVRTLQTVEASCRLDAIASAGFGLSRAKIVTHVKAGRL 210
>gi|78213667|ref|YP_382446.1| RNA-binding S4 [Synechococcus sp. CC9605]
gi|78198126|gb|ABB35891.1| RNA-binding S4 [Synechococcus sp. CC9605]
Length = 258
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 106/196 (54%), Gaps = 1/196 (0%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
EE+ ++++A + + S FL+ P+ +E+M L L+++ ++ GGYP AER RL
Sbjct: 15 EELTLLVDLAEQVLRTWQPAWSPFLSAPLREEAMARLGSLSELTWMSDGGYPGAERQRLL 74
Query: 139 VGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+ + L I GNF F P S D ++ G+ + IGD+ ++G++G Q
Sbjct: 75 CHRRDDSPDAEPPIQGLLIEGNFLFDPLSPEDLREALQTMGVDADNIGDLWVRGDRGGQG 134
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT-KSFKTIEASLRVDALASAGF 257
+ P A L L V V + C PL L+ R+ ++ +T+EAS R+DA+ASAGF
Sbjct: 135 ICTPSAAKALHGRLGAVREVEIRCESRPLEQLQQPVQRSVRTLQTVEASCRLDAIASAGF 194
Query: 258 KLSRSKLVNLIRYSSL 273
LSR+K+V ++ L
Sbjct: 195 GLSRAKIVTHVKAGRL 210
>gi|352095856|ref|ZP_08956803.1| photosystem II S4 domain protein [Synechococcus sp. WH 8016]
gi|351677212|gb|EHA60361.1| photosystem II S4 domain protein [Synechococcus sp. WH 8016]
Length = 242
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 101/177 (57%), Gaps = 3/177 (1%)
Query: 99 HSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSI 157
S FL+ +L+++ L LA++K GGYP AER RL + H + +P +A L++
Sbjct: 19 WSPFLSALMLEDANQ-LGALAELKISRDGGYPGAERKRLLIQHATSPEPEPPCPLAGLNV 77
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
GNF F P S + ++ G G+ +GD+ ++G++GAQ + PE A L V
Sbjct: 78 EGNFLFDPTSPDEMRLALQGIGVDEAALGDLWIRGDRGAQAICTPEAAALLQGQRGSVRE 137
Query: 218 VSVSCTRIPLLALEYEPPRT-KSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSL 273
V ++C PL AL++ R + ++EAS R+DA+ASAGF +SRSK+V I+ L
Sbjct: 138 VMIACESWPLEALQWPVQRVARRLSSVEASCRLDAIASAGFGISRSKVVKQIKDGRL 194
>gi|294794611|ref|ZP_06759747.1| S4 domain protein [Veillonella sp. 3_1_44]
gi|294454941|gb|EFG23314.1| S4 domain protein [Veillonella sp. 3_1_44]
Length = 261
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 115/204 (56%), Gaps = 9/204 (4%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCR 136
EE + +L++A + R +DF +P V+ +++ A VK GGY AER R
Sbjct: 18 EEARRMLDLAEQVVKGRPYRVADFTSPAGLVIADAIKANYPQLTVKT--DGGYEGAERIR 75
Query: 137 LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
++ + + + AL + + F+ +H D LGS++G GI R K GD+I+Q + GA
Sbjct: 76 IAFVDSDFNGTVDMGIRALKVNWDPRFRLLTHRDVLGSLMGLGIDRSKFGDVIVQ-QGGA 134
Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
Q +V +AD++I + K+ VSVS I L + + + K +T ASLR+DA+AS+G
Sbjct: 135 QIMVDESVADFVIQNFTKIAMVSVSVETIELSDIAPKEEKIKEVRTTVASLRLDAVASSG 194
Query: 257 FKLSRSKLVNLIRYSSLASLVQIS 280
F +SR+KLV+ I A L+Q++
Sbjct: 195 FSVSRTKLVSAIN----AGLLQVN 214
>gi|116073646|ref|ZP_01470908.1| RNA-binding S4 [Synechococcus sp. RS9916]
gi|116068951|gb|EAU74703.1| RNA-binding S4 [Synechococcus sp. RS9916]
Length = 263
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 115/222 (51%), Gaps = 8/222 (3%)
Query: 68 LLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQG 127
LL+G D ++ + + + R + S F++ P+ ++++ L L +++ A G
Sbjct: 8 LLQGSQDPEGLDALIDVADQVLRTW---QPQWSCFVSAPLREDAVQRLAVLTELQIHADG 64
Query: 128 GYPQAERCRLSVGHPEALT----SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIARE 183
G P+AER RL + E T P V L + GNF F P D +IL GI
Sbjct: 65 GRPEAERQRLLISRCEGGTVPQEEHPLPVMGLEVEGNFLFDPVDPHDMRAAILELGIEAG 124
Query: 184 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT-KSFKT 242
+GD+ ++G++GAQ L PE A L +V +V + P+ +L+ R K F +
Sbjct: 125 HLGDLWIRGDRGAQLLCTPEAAVALHGRSGRVRDVDIQLEERPVASLQLPQSRVPKRFAS 184
Query: 243 IEASLRVDALASAGFKLSRSKLVNLIRYSSLASLVQISAKAS 284
+EAS R+DA+ASAGF LSR+K+V+ IR L Q +AS
Sbjct: 185 VEASCRLDAIASAGFGLSRAKVVDQIRSGRLRLNWQSVRQAS 226
>gi|294792855|ref|ZP_06758002.1| S4 domain protein [Veillonella sp. 6_1_27]
gi|294456754|gb|EFG25117.1| S4 domain protein [Veillonella sp. 6_1_27]
Length = 261
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 115/204 (56%), Gaps = 9/204 (4%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCR 136
EE + +L++A + R +DF +P V+ +++ A VK GGY AER R
Sbjct: 18 EEARRMLDLAEQVVKGRPYRVADFTSPAGLVIADAIKANYPQLTVKT--DGGYEGAERIR 75
Query: 137 LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
++ + + + AL + + F+ +H D LGS++G GI R K GD+I+Q + GA
Sbjct: 76 IAFVDSDFNGTVDMGIRALKVNWDPRFRLLTHRDVLGSLMGLGIDRSKFGDVIVQ-QGGA 134
Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
Q +V +AD++I + K+ VSVS I L + + + K +T ASLR+DA+AS+G
Sbjct: 135 QIMVDESVADFVIQNFTKIAMVSVSVEAIELSDIAPKEEKIKEVRTTVASLRLDAVASSG 194
Query: 257 FKLSRSKLVNLIRYSSLASLVQIS 280
F +SR+KLV+ I A L+Q++
Sbjct: 195 FSVSRTKLVSAIN----AGLLQVN 214
>gi|269798485|ref|YP_003312385.1| RNA-binding S4 domain-containing protein [Veillonella parvula DSM
2008]
gi|282849929|ref|ZP_06259312.1| S4 domain protein [Veillonella parvula ATCC 17745]
gi|269095114|gb|ACZ25105.1| RNA-binding S4 domain protein [Veillonella parvula DSM 2008]
gi|282580366|gb|EFB85766.1| S4 domain protein [Veillonella parvula ATCC 17745]
Length = 261
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 115/204 (56%), Gaps = 9/204 (4%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCR 136
EE + +L++A + R +DF +P V+ +++ A VK GGY AER R
Sbjct: 18 EEARRMLDLAEQVVKGRPYRVADFTSPAGLVIADAIKANYPQLTVKT--DGGYEGAERIR 75
Query: 137 LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
++ + + + AL + + F+ +H D LGS++G GI R K GD+I+Q + GA
Sbjct: 76 IAFVDSDFNGTVDMGIRALKVNWDPRFRLLTHRDVLGSLMGLGIDRSKFGDVIVQ-QGGA 134
Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
Q +V +AD++I + K+ VSVS I L + + + K +T ASLR+DA+AS+G
Sbjct: 135 QIMVDESVADFVIQNFTKIAMVSVSVEAIELSDIAPKEEKIKEVRTTVASLRLDAVASSG 194
Query: 257 FKLSRSKLVNLIRYSSLASLVQIS 280
F +SR+KLV+ I A L+Q++
Sbjct: 195 FSVSRTKLVSAIN----AGLLQVN 214
>gi|416998514|ref|ZP_11939275.1| S4 domain protein [Veillonella parvula ACS-068-V-Sch12]
gi|333977412|gb|EGL78270.1| S4 domain protein [Veillonella parvula ACS-068-V-Sch12]
Length = 261
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 115/204 (56%), Gaps = 9/204 (4%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCR 136
EE + +L++A + R +DF +P V+ +++ A VK GGY AER R
Sbjct: 18 EEARRMLDLAEQVVKGRPYRVADFTSPAGLVIADAIKANYPQLTVKT--DGGYEGAERIR 75
Query: 137 LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
++ + + + AL + + F+ +H D LGS++G GI R K GD+I+Q + GA
Sbjct: 76 IAFVDSDFNGTVDMGIRALKVNWDPRFRLLTHRDVLGSLMGLGIDRSKFGDVIVQ-QGGA 134
Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
Q +V +AD++I + K+ VSVS I L + + + K +T ASLR+DA+AS+G
Sbjct: 135 QIMVDESVADFVIQNFTKIAMVSVSVEAIELSDIAPKEEKIKEVRTTVASLRLDAVASSG 194
Query: 257 FKLSRSKLVNLIRYSSLASLVQIS 280
F +SR+KLV+ I A L+Q++
Sbjct: 195 FSVSRTKLVSAIN----AGLLQVN 214
>gi|238018691|ref|ZP_04599117.1| hypothetical protein VEIDISOL_00535 [Veillonella dispar ATCC 17748]
gi|237865162|gb|EEP66452.1| hypothetical protein VEIDISOL_00535 [Veillonella dispar ATCC 17748]
Length = 261
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 115/204 (56%), Gaps = 9/204 (4%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCR 136
EE + +L++A + R +DF +P V+ +++ A VK GGY AER R
Sbjct: 18 EEARRMLDLAEQVVKGRPYRVADFTSPAGLVIADAIKANYPQLIVKT--DGGYEGAERIR 75
Query: 137 LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
++ + + + AL + + F+ +H D LGS++G GI R K GD+I+Q + GA
Sbjct: 76 IAFVDSDFNGTVDMGIRALKVNWDPRFRLLTHRDVLGSLMGLGIDRSKFGDVIVQ-QGGA 134
Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
Q LV +AD++I + K+ VSVS I L + + + K +T ASLR+DA+AS+G
Sbjct: 135 QILVDESVADFVIQNFTKIAMVSVSVEAIDLSDIAPKEEKIKEVRTTVASLRLDAVASSG 194
Query: 257 FKLSRSKLVNLIRYSSLASLVQIS 280
F +SR+KLV+ I A L+Q++
Sbjct: 195 FSVSRTKLVSAIN----AGLLQVN 214
>gi|412992974|emb|CCO16507.1| RNA-binding S4 [Bathycoccus prasinos]
Length = 340
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 109/219 (49%), Gaps = 38/219 (17%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCR 136
++V LE A+RA +DF +PP+ A++K V GG+ AE+ R
Sbjct: 69 KDVTRALEQAKRAEKVWSCEITDFYSPPLCDWIEAAVKKNFGEAIVCNRFGGFSGAEQQR 128
Query: 137 LSVGH-------------PEALTSDPD---------IVAALSITGNFGFQPCSHGDFLGS 174
+ + E ++ D +A ++I+G F F P SH DFLG+
Sbjct: 129 VLLARRDNSEELFELAKKDEFFANEEDEGEVDTNNCAIACVNISGKFAFDPASHPDFLGA 188
Query: 175 ILGTGIAREKIGDIILQG--EKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALE- 231
+L G+ REKIGDI++ E GA+ L P +A +L +LE V V V+ PL LE
Sbjct: 189 VLNAGVKREKIGDILVNNSSEGGAKVLATPAIAVFLTRALESVRTVKVTVELFPLSELEG 248
Query: 232 ------YEPPRTKSFKTIEASLRVDALASAGFKLSRSKL 264
EP R T EASLR+DA+ASAGF+ +RSK+
Sbjct: 249 AQGAQVQEPVR-----TYEASLRLDAVASAGFRCARSKM 282
>gi|313892887|ref|ZP_07826464.1| S4 domain protein [Veillonella sp. oral taxon 158 str. F0412]
gi|313442240|gb|EFR60655.1| S4 domain protein [Veillonella sp. oral taxon 158 str. F0412]
Length = 261
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 115/204 (56%), Gaps = 9/204 (4%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCR 136
EE + +L++A + R +DF +P V+ +++ A VK GGY AER R
Sbjct: 18 EEARRMLDLAEQVVKGRPYRVADFTSPAGLVIADAIKANYPQLIVKT--DGGYEGAERIR 75
Query: 137 LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
++ + + + AL + + F+ +H D LGS++G GI R K GD+I+Q + GA
Sbjct: 76 IAFVDSDFNGTVDMGIRALKVNWDPRFRLLTHRDVLGSLMGLGIDRSKFGDVIVQ-QGGA 134
Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
Q +V +AD++I + K+ VSVS I L + + + K +T ASLR+DA+AS+G
Sbjct: 135 QIMVDESVADFVIQNFTKIAMVSVSVEAIELSDIAPKEEKIKEVRTTVASLRLDAVASSG 194
Query: 257 FKLSRSKLVNLIRYSSLASLVQIS 280
F +SR+KLV+ I A L+Q++
Sbjct: 195 FSVSRTKLVSAIN----AGLLQVN 214
>gi|414154543|ref|ZP_11410861.1| RNA-binding S4 domain protein [Desulfotomaculum hydrothermale Lam5
= DSM 18033]
gi|411453940|emb|CCO08765.1| RNA-binding S4 domain protein [Desulfotomaculum hydrothermale Lam5
= DSM 18033]
Length = 263
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 114/221 (51%), Gaps = 6/221 (2%)
Query: 68 LLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQG 127
LL + D+ + +L+ A + L ++F P + LE++ D++ G
Sbjct: 8 LLGSIRDQEEKVVIAKVLDDAEKVLKNHRPLLTNFYDPYHTGLIISVLERIPDLEFGTNG 67
Query: 128 GYPQAERCRLSVGHPEALTS---DPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GYP AER R+++ P+ L D D V L++ GNF +H DFLGS+LG GI RE
Sbjct: 68 GYPAAERVRIAI-FPDYLDENEIDYDTVV-LAVEGNFKMVQVTHRDFLGSVLGLGIKREM 125
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
+GD+++ G Q + E+A YL T L +V V V+ I L R K KT
Sbjct: 126 VGDLLVTN-NGCQVVATREVASYLSTHLTRVHRVRVTVREILPAELVLPEVRVKEIKTTV 184
Query: 245 ASLRVDALASAGFKLSRSKLVNLIRYSSLASLVQISAKASA 285
ASLR+DA+A+AGF SR++LV I L+ A A+A
Sbjct: 185 ASLRIDAVAAAGFGTSRTRLVREILAEKLSLNWHTCANAAA 225
>gi|33865067|ref|NP_896626.1| hypothetical protein SYNW0531 [Synechococcus sp. WH 8102]
gi|33638751|emb|CAE07046.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
Length = 291
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 103/196 (52%), Gaps = 1/196 (0%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
E + +L++A + + SDFL P+ +E++ L L+++ GG+ AERCRL
Sbjct: 48 EGLAALLDLAEQVLRTWQPSWSDFLDAPLQEEALKRLSDLSELAWHRDGGHQGAERCRLL 107
Query: 139 VGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+ + L I GNF F P + D ++ G E +GD+ ++G++G Q
Sbjct: 108 CHRRDQPVESTPPIQGLLIEGNFLFDPLTPEDLRSALHNMGAQPEDLGDLWVRGDRGGQG 167
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT-KSFKTIEASLRVDALASAGF 257
L+ P A+ L ++ +V + C + + L+ R K T+EAS R+DA+ASAGF
Sbjct: 168 LISPNAAELLQGRRGQLRDVEIHCDVLEITQLQLPAQRNPKRLTTVEASCRIDAIASAGF 227
Query: 258 KLSRSKLVNLIRYSSL 273
LSRSK+V+ I+ L
Sbjct: 228 GLSRSKVVSQIKAGRL 243
>gi|376260959|ref|YP_005147679.1| hypothetical protein [Clostridium sp. BNL1100]
gi|373944953|gb|AEY65874.1| hypothetical protein Clo1100_1662 [Clostridium sp. BNL1100]
Length = 260
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 102/176 (57%), Gaps = 10/176 (5%)
Query: 99 HSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI---VAAL 155
+SDFL+P + L+++ DV GGY AER ++V + + D V L
Sbjct: 36 YSDFLSPYEASVAKKVLDRVKDVFYKLTGGYEGAERA-ITVISSDFIEEDIPYNTPVGLL 94
Query: 156 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 215
IT SH D+LGS+LG GI REKIGDI++ E A V+ ++A+Y++ +L+K+
Sbjct: 95 RITPVIE-NKLSHRDYLGSLLGLGIKREKIGDILVN-ETFADVFVIDKIAEYILYNLDKI 152
Query: 216 GNVSVSCTRIPLLALEYEPPRTK--SFKTIEASLRVDALASAGFKLSRSKLVNLIR 269
GNV V C + ++ PP+ K S T ASLR D++AS+GF LSR+K+++ +
Sbjct: 153 GNVKVQCELCDI--YQFTPPQKKERSINTTVASLRADSVASSGFGLSRTKVMDYFK 206
>gi|374602415|ref|ZP_09675408.1| hypothetical protein PDENDC454_05666 [Paenibacillus dendritiformis
C454]
gi|374392017|gb|EHQ63346.1| hypothetical protein PDENDC454_05666 [Paenibacillus dendritiformis
C454]
Length = 262
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 106/194 (54%), Gaps = 5/194 (2%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
E V E RRAS EV +DFL P + + + +DV+ GG QAER R
Sbjct: 17 EFVDRAWEWVRRASEGHEVKRTDFLDPRQAYIAATLVNRSSDVQLRLDGGSEQAERKRAL 76
Query: 139 VGHPEALTSDPDI--VAALSITG-NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
+ P+ + +D + ++ L IT + + HGDFLG++LG GI REKIGDI + ++
Sbjct: 77 IA-PDYVYADGEDMGISVLQITSPDRKWDELEHGDFLGALLGLGIKREKIGDIHVSPDR- 134
Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASA 255
LV E+A ++ T L +V VSV +PL L+ K+ K ASLR+D +AS
Sbjct: 135 CHVLVTEEMAPFVNTHLRQVHRVSVLTDILPLSGLQAADAEMKTAKLSVASLRLDGIASD 194
Query: 256 GFKLSRSKLVNLIR 269
F+LSR+K+V I+
Sbjct: 195 VFRLSRAKIVAPIK 208
>gi|134298583|ref|YP_001112079.1| RNA-binding S4 domain-containing protein [Desulfotomaculum reducens
MI-1]
gi|134051283|gb|ABO49254.1| RNA-binding S4 domain protein [Desulfotomaculum reducens MI-1]
Length = 255
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 93/162 (57%), Gaps = 6/162 (3%)
Query: 115 LEKLADVKAVAQGGYPQAERCRLSVGHPEALTS---DPDIVAALSITGNFGFQPCSHGDF 171
LE++ D+ + GGY +ER R +V P+ L D +I L++ GNF +H DF
Sbjct: 47 LERIQDIDFASYGGYDLSERVR-TVIFPDYLEGEVFDYEI-TLLAVEGNFKMVKVNHRDF 104
Query: 172 LGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALE 231
LGS+LG GI RE +GD+I+ +KG Q +V E+A YL+ +L KV V V I L+
Sbjct: 105 LGSLLGLGIKREMVGDLIVS-DKGCQVMVAREIAPYLMANLTKVHKVRVEVREICPEELK 163
Query: 232 YEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSL 273
+ K KT ASLR+D +A+AGF SRS++ I+ L
Sbjct: 164 LPELKVKEIKTTVASLRLDTVAAAGFGTSRSRIAREIQAERL 205
>gi|333978627|ref|YP_004516572.1| RNA-binding S4 domain-containing protein [Desulfotomaculum
kuznetsovii DSM 6115]
gi|333822108|gb|AEG14771.1| RNA-binding S4 domain protein [Desulfotomaculum kuznetsovii DSM
6115]
Length = 262
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 80/219 (36%), Positives = 124/219 (56%), Gaps = 11/219 (5%)
Query: 70 KGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGY 129
K +K + V +++ RA R+ +DFL P +MALE++ D+ A + GGY
Sbjct: 12 KTQDEKEMLSRVYDLVQQVLRA---RQPRVTDFLDPYHAGLVLMALERVPDLAARSDGGY 68
Query: 130 PQAERCRLSVGHPEALTSDPD----IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
P AER R+ + +P+ L DP +A LSI G+F Q SH DFLG++L G+ REKI
Sbjct: 69 PGAERVRILI-YPDYL--DPREEDWQLAFLSIQGSFEEQEPSHRDFLGALLALGLRREKI 125
Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
GDI+L ++ AQ +V E+A ++ + L +VG +SV+ RI L P R + K
Sbjct: 126 GDILLHNDQ-AQVVVAGEIAPFIQSQLARVGRISVTVHRISREQLCSPPRRVREIKATVP 184
Query: 246 SLRVDALASAGFKLSRSKLVNLIRYSSLASLVQISAKAS 284
SLR+D +A+AGF SR+++ I ++ Q+ ++ S
Sbjct: 185 SLRLDVVAAAGFGTSRTRMAREITAQRVSLNWQVCSELS 223
>gi|427413804|ref|ZP_18903995.1| hypothetical protein HMPREF9282_01402 [Veillonella ratti
ACS-216-V-Col6b]
gi|425715127|gb|EKU78121.1| hypothetical protein HMPREF9282_01402 [Veillonella ratti
ACS-216-V-Col6b]
Length = 261
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 119/205 (58%), Gaps = 11/205 (5%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCR 136
EE + +L++A + + + ++F++P V+ +++ A L +K GGY AER R
Sbjct: 18 EEARRMLDLAEQVVAGKPYRVTEFMSPAGLVIADAIKA--NLPQLKVEFGGGYEGAERIR 75
Query: 137 LSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
++ + + D+ + AL ++ + F+ +H D LGS++G GI R GDII+Q G
Sbjct: 76 VAFVEAD-FQGNVDLGIKALKVSWDPRFRLLTHRDVLGSLMGLGIERTNFGDIIMQ-TGG 133
Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASA 255
AQ +V +ADY+ + K+ VSVS + + ++ + + K +T ASLR+DA+AS+
Sbjct: 134 AQLIVDAAMADYVKQNFTKIAMVSVSVEDMDISEIQPKEEKIKEIRTTVASLRLDAVASS 193
Query: 256 GFKLSRSKLVNLIRYSSLASLVQIS 280
GF +SR+K+V+ I A LVQ++
Sbjct: 194 GFSVSRTKVVSSIN----AGLVQVN 214
>gi|298704938|emb|CBJ28441.1| RNA-binding S4 [Ectocarpus siliculosus]
Length = 158
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 79/120 (65%), Gaps = 4/120 (3%)
Query: 166 CSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRI 225
H DFLG+I+ G+ R+ IGDI++QGE+GAQ LV P +A++L SL V +V V I
Sbjct: 2 ADHRDFLGAIVNLGVTRDGIGDILVQGERGAQVLVDPVMAEFLAGSLTSVRSVKVKVRPI 61
Query: 226 PLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSLASLVQISAKASA 285
PL L P +TK T+EASLR+D++ASAG +SRSK+ I+ + LV ++ KA++
Sbjct: 62 PLEELAVRPAKTKDVSTVEASLRLDSVASAGMGMSRSKMSAAIK----SGLVLVNWKAAS 117
>gi|33863700|ref|NP_895260.1| hypothetical protein PMT1433 [Prochlorococcus marinus str. MIT
9313]
gi|33635283|emb|CAE21608.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9313]
Length = 263
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 109/214 (50%), Gaps = 12/214 (5%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
+LLKG D +E +L A + S F++ P+ +E++ L D+ A
Sbjct: 7 ELLKGCLDPQGMEA---LLVQADTVLRTWQPSWSAFVSAPLREEALHRFSTLTDLHWHAD 63
Query: 127 GGYPQAERCRL----SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAR 182
GG+P AER RL S H S + L + GNF F S D ++
Sbjct: 64 GGHPGAERQRLCCWRSEDHHHPTPSQAAPIHGLLLHGNFLFDSPSPTDLRQALEAIDAQP 123
Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPR---TKS 239
E++GD+ ++G++GAQ L PELA L +V V ++C + + L +PP T+
Sbjct: 124 EQLGDLWIRGDRGAQALCTPELAVNLDGRSSRVREVEITCEAVAVAQL--QPPAHRLTRR 181
Query: 240 FKTIEASLRVDALASAGFKLSRSKLVNLIRYSSL 273
++EAS R+DA+ASAGF LSR+K+VN I+ L
Sbjct: 182 LNSVEASCRIDAIASAGFGLSRAKVVNQIKQGHL 215
>gi|313891380|ref|ZP_07824996.1| S4 domain protein [Dialister microaerophilus UPII 345-E]
gi|313120155|gb|EFR43331.1| S4 domain protein [Dialister microaerophilus UPII 345-E]
Length = 263
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 108/196 (55%), Gaps = 2/196 (1%)
Query: 73 GDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQA 132
GD+ A E ++++A R S F++P ++ + V + GGY +A
Sbjct: 15 GDE-AKEMAIRLVDLAESVERGRPFTVSSFMSPLSIQIGQTIAAHMKTVTSSYNGGYHEA 73
Query: 133 ERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQG 192
ER +++ + ++ LS+T + F+ H D LGS++G GI RE +GDI++QG
Sbjct: 74 ERVKVAFQSNDYGGKVNYEISLLSVTWDDRFRLIGHRDVLGSLMGLGIEREVLGDILMQG 133
Query: 193 EKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDAL 252
+ AQ LV ++++Y+ ++ KV V V IPL L+ + K + + AS+R+DA+
Sbjct: 134 TQ-AQILVDGKMSEYIKSNFTKVAMVPVQVEEIPLEELKVPEQKAKEIRAMVASMRLDAV 192
Query: 253 ASAGFKLSRSKLVNLI 268
+AGF LSR+K+V +I
Sbjct: 193 GAAGFGLSRTKMVQMI 208
>gi|124022232|ref|YP_001016539.1| S4-like domain-containing protein [Prochlorococcus marinus str. MIT
9303]
gi|123962518|gb|ABM77274.1| Uncharacterized conserved protein, contains S4-like domain
[Prochlorococcus marinus str. MIT 9303]
Length = 295
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 110/216 (50%), Gaps = 16/216 (7%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
+LLKG D +E +L A + S F++ P+ ++++ L D+ A
Sbjct: 39 ELLKGCLDPQGMEA---LLVQADSVLRTWQPSWSAFVSAPLREQALHRFATLTDLHWHAD 95
Query: 127 GGYPQAERCRLSVG------HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGI 180
GG+P AER RL HP + P + L + GNF F S D ++
Sbjct: 96 GGHPGAERQRLCCSRCEDHHHPTPSQAAP--IHGLLLHGNFLFDSPSPTDLRQALEAIDT 153
Query: 181 AREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPR---T 237
E++GD+ ++G++GAQ L PELA L KV V ++C + + L +PP T
Sbjct: 154 RPEQLGDLWIRGDRGAQALCTPELAVNLDGRSSKVREVEITCEAVAVTQL--QPPAHRLT 211
Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSL 273
+ ++EAS R+DA+ASAGF LSR+K+VN I+ L
Sbjct: 212 RRLNSVEASCRIDAIASAGFGLSRAKVVNQIKQGHL 247
>gi|148240319|ref|YP_001225706.1| hypothetical protein SynWH7803_1983 [Synechococcus sp. WH 7803]
gi|147848858|emb|CAK24409.1| Conserved hypothetical protein [Synechococcus sp. WH 7803]
Length = 259
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 107/199 (53%), Gaps = 9/199 (4%)
Query: 83 HILEMARRASSRREVLH------SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCR 136
H MAR EVL S FLT P L+E+ LE LA+++ V GG AERCR
Sbjct: 14 HRAVMARLLDQAEEVLRTWQPSWSPFLTGPELEEAG-KLEALAELRMVRDGGREGAERCR 72
Query: 137 LSVGH-PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
L + + ++ + L + GNF F D +++ ++ + IGD+ L+G++G
Sbjct: 73 LQLSRRDQEADAESAPLCGLRLEGNFLFDRAEPDDMRQALMQLDVSADSIGDLWLRGDRG 132
Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT-KSFKTIEASLRVDALAS 254
AQ + PE + L +V +V + +PL AL++ RT + +++EAS R+DA+AS
Sbjct: 133 AQAVCTPEAGEQLNGLTGQVRDVPLLLETVPLDALQWPARRTPRLLRSVEASCRLDAIAS 192
Query: 255 AGFKLSRSKLVNLIRYSSL 273
AGF LSRSK+ I+ L
Sbjct: 193 AGFGLSRSKVTREIKEGRL 211
>gi|452992508|emb|CCQ96039.1| RNA-binding S4 domain protein [Clostridium ultunense Esp]
Length = 264
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 100/199 (50%), Gaps = 8/199 (4%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
D LL + DK I ++ +L+ +R + +DF+ P + + L + D+
Sbjct: 9 DSLLNHIVDKEQILNMRRVLDQIEIVMNRHTIGITDFMDPYERRLAQSILNRFIDISYKE 68
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI---VAALSITGNFGFQPCSHGDFLGSILGTGIAR 182
GG +AER + + +PE DI + +L I GN SH DFLG IL GI R
Sbjct: 69 LGGIDEAERKVIMI-YPEYFQY-QDIESPIRSLMIEGNIS--KLSHRDFLGGILNLGINR 124
Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 242
EKIGDI++ E Q +V E+ DY++ SL KVG V IPL L+ + T
Sbjct: 125 EKIGDILIH-EDNVQVVVKSEIFDYILISLRKVGKEKVKVREIPLKELKSSNIEFEDITT 183
Query: 243 IEASLRVDALASAGFKLSR 261
SLR+DAL S+ + LSR
Sbjct: 184 TVPSLRLDALISSAWNLSR 202
>gi|329121439|ref|ZP_08250063.1| S4 domain protein [Dialister micraerophilus DSM 19965]
gi|327469354|gb|EGF14824.1| S4 domain protein [Dialister micraerophilus DSM 19965]
Length = 263
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 108/196 (55%), Gaps = 2/196 (1%)
Query: 73 GDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQA 132
GD+ A E ++++A R S F++P ++ + V + GGY +A
Sbjct: 15 GDE-AKEMAIRLVDLAESVERGRPFTVSSFMSPLSIQIGQTIAAHMKTVTSSYNGGYHEA 73
Query: 133 ERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQG 192
ER +++ + ++ LS+T + F+ H D LGS++G GI RE +GDI++QG
Sbjct: 74 ERVKVAFQSNDYGGKVNYEISLLSVTWDDRFRLIGHRDVLGSLMGLGIEREVLGDILMQG 133
Query: 193 EKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDAL 252
+ AQ LV ++++Y+ ++ KV V V IPL L+ + K + + AS+R+DA+
Sbjct: 134 AQ-AQILVDGKMSEYIKSNFTKVAMVPVQVEEIPLEELKVPEQKAKEIRAMVASMRLDAV 192
Query: 253 ASAGFKLSRSKLVNLI 268
+AGF LSR+K+V +I
Sbjct: 193 GAAGFGLSRTKMVQMI 208
>gi|312143929|ref|YP_003995375.1| RNA-binding S4 domain-containing protein [Halanaerobium
hydrogeniformans]
gi|311904580|gb|ADQ15021.1| RNA-binding S4 domain protein [Halanaerobium hydrogeniformans]
Length = 262
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 101/191 (52%), Gaps = 8/191 (4%)
Query: 83 HILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHP 142
HIL+ + R + SDFL P K + +++++D+ +GGY AER RL + P
Sbjct: 22 HILDKSERVLKYHKTEASDFLNPYQQKIAEGIVKQISDINFKFEGGYKAAERKRLLI-FP 80
Query: 143 EALTSDPDIV----AALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
E L PD+V A I GNF FQ +H DFLG+++G G+ R+ IGDI++ AQ
Sbjct: 81 EYLF--PDLVESQIAIFKIKGNFSFQNLTHRDFLGAVMGLGLQRKVIGDILIHS-GFAQL 137
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
+ E+ D + +KV V V +I + K T S+R+DA+AS+GF
Sbjct: 138 VTAVEVKDIIELRFDKVHQVPVEVEKISADDIIKPTQYEKEILTTVPSMRLDAVASSGFG 197
Query: 259 LSRSKLVNLIR 269
SRSK+ I+
Sbjct: 198 DSRSKMSRSIK 208
>gi|88807417|ref|ZP_01122929.1| RNA-binding S4 [Synechococcus sp. WH 7805]
gi|88788631|gb|EAR19786.1| RNA-binding S4 [Synechococcus sp. WH 7805]
Length = 259
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 106/195 (54%), Gaps = 9/195 (4%)
Query: 87 MARRASSRREVLH------SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
MAR EVL S FL+ P L E LE L++++ V GG AERCRL +
Sbjct: 18 MARLLDQAEEVLRTWQPSWSPFLSGPEL-EDAGKLEALSELRMVRDGGREGAERCRLQLS 76
Query: 141 HPEALT-SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFL 199
+ T S+ + L + GNF F D +++ ++ + IGD+ L+G++GAQ +
Sbjct: 77 RRDQETNSESAPLCGLRLEGNFLFDRAEPDDMRQALMRLDVSADAIGDLWLRGDRGAQAI 136
Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT-KSFKTIEASLRVDALASAGFK 258
PE ++L +V +V + +PL AL++ RT + +++EAS R+DA+ASAGF
Sbjct: 137 CTPEAGEHLNGLTGQVRDVPLLLETVPLEALQWPARRTPRLLRSVEASCRLDAIASAGFG 196
Query: 259 LSRSKLVNLIRYSSL 273
LSRSK+ I+ L
Sbjct: 197 LSRSKVTREIKEGRL 211
>gi|334341816|ref|YP_004546796.1| RNA-binding S4 domain-containing protein [Desulfotomaculum ruminis
DSM 2154]
gi|334093170|gb|AEG61510.1| RNA-binding S4 domain-containing protein [Desulfotomaculum ruminis
DSM 2154]
Length = 262
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 91/161 (56%), Gaps = 4/161 (2%)
Query: 115 LEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSITGNFGFQPCSHGDFL 172
LE++ + A GGYP AER R+++ P+ L S + + L++ GNF +H DFL
Sbjct: 55 LERIPGLDFAAGGGYPTAERVRIAL-FPDYLDESQVNFELVLLAVEGNFKMVKTTHRDFL 113
Query: 173 GSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEY 232
GSIL GI RE IGDI++ +G Q +V E+A YL +L KV V V I L
Sbjct: 114 GSILSLGIKRELIGDILIT-PRGCQVIVAREVASYLRANLTKVHRVGVEVREIGFEVLSL 172
Query: 233 EPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSL 273
K +T ASLR+DA+A+AGF +SRS++ I+ L
Sbjct: 173 PEVTIKEIRTTVASLRLDAVAAAGFGMSRSRMAREIQAEKL 213
>gi|407474154|ref|YP_006788554.1| RNA-binding S4 domain-containing protein [Clostridium acidurici 9a]
gi|407050662|gb|AFS78707.1| putative RNA-binding S4 domain-containing protein [Clostridium
acidurici 9a]
Length = 262
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 103/190 (54%), Gaps = 5/190 (2%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
++ IL+ +V ++DFL P K S L +L DV +GG +ER + +
Sbjct: 21 MRKILDKIESVLRHHDVEYTDFLDPYQRKLSHSILNRL-DVSYYEEGGLEDSERKSIII- 78
Query: 141 HPEALTSD--PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
PE ++ + + + A+ I GNF F H D+LG+ILG GI REK+GDI + E A
Sbjct: 79 FPEYMSKENIENPIKAIKIEGNFKFTNLRHKDYLGAILGLGIKREKVGDINIY-EDFAII 137
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
L+ EL D++I +L+ +G +V+ +I L +E + +T +SLR+DAL S
Sbjct: 138 LLHKELLDFVIYNLKNIGRENVTVRQISLGEIEKTKEEFEDIQTTISSLRLDALISGVCN 197
Query: 259 LSRSKLVNLI 268
LSRSK N I
Sbjct: 198 LSRSKSANQI 207
>gi|220931768|ref|YP_002508676.1| RNA-binding S4 domain-containing protein [Halothermothrix orenii H
168]
gi|219993078|gb|ACL69681.1| RNA-binding S4 domain protein [Halothermothrix orenii H 168]
Length = 262
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 104/191 (54%), Gaps = 8/191 (4%)
Query: 83 HILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG-- 140
IL+ R+ + ++FL P + ++++ D+ GGY +AER R+++
Sbjct: 22 QILDKIEIVVKRKSEVSTNFLNPHEQSIAEGLIKQVYDINYKIDGGYDRAERKRVTLFPD 81
Query: 141 --HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+PE + + V L + GNF F SH DFLG+ILG GI RE IGDI++ + A+
Sbjct: 82 YLYPEHVKTP---VCILKVEGNFKFNSVSHRDFLGAILGLGIKREMIGDILILKD-FAEV 137
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
+V E+ +Y+ L+KV V V+ + + T+ F T S+R+DA++SAGF
Sbjct: 138 VVAEEIKEYICLRLKKVHQVPVNVEELDRENVVIPAENTREFTTTVPSMRLDAVSSAGFG 197
Query: 259 LSRSKLVNLIR 269
SR+K+ +I+
Sbjct: 198 DSRNKISRIIK 208
>gi|303229252|ref|ZP_07316048.1| S4 domain protein [Veillonella atypica ACS-134-V-Col7a]
gi|302516107|gb|EFL58053.1| S4 domain protein [Veillonella atypica ACS-134-V-Col7a]
Length = 261
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 115/204 (56%), Gaps = 9/204 (4%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
EE + +L++A + + DF +P L + ++ + GGY AER R++
Sbjct: 18 EEARRMLDLAEQVVKGKPYRVCDFTSPAGLVIADAIKAAYPELLVQSYGGYEGAERIRIA 77
Query: 139 V--GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
H + T D IV L ++ + F+ +H D LGS++G GI R K GDII+ G+ GA
Sbjct: 78 FVDSHFQG-TVDMGIVP-LKVSWDPRFRLLNHRDVLGSLMGLGIDRSKFGDIIM-GQGGA 134
Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
Q LV +AD+++ + K+ V+VS T + L + + + K +T ASLR+DA+AS+G
Sbjct: 135 QILVDSAVADFVVQNFTKIAMVAVSVTPMELDEIAPKEEKIKEVRTTVASLRLDAVASSG 194
Query: 257 FKLSRSKLVNLIRYSSLASLVQIS 280
F +SR+KLV+ + A L+Q++
Sbjct: 195 FSVSRTKLVSAVN----AGLLQVN 214
>gi|374296346|ref|YP_005046537.1| hypothetical protein [Clostridium clariflavum DSM 19732]
gi|359825840|gb|AEV68613.1| hypothetical protein Clocl_2014 [Clostridium clariflavum DSM 19732]
Length = 263
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 115/216 (53%), Gaps = 18/216 (8%)
Query: 64 NFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKA 123
N +++LK V V +L+ A +V +DFL P ++ + A +D+
Sbjct: 2 NKEEILKKVSKSEDRLVVAKVLDKFYLAEKTGKVTVTDFLDPR-MQNVVSACLNSSDIDN 60
Query: 124 -VAQGGYPQAERCRLSVGHPEALTSD--PDIVAALSITGNFGFQPC-------SHGDFLG 173
+ GGY AER + V P + D PD++ + + C SH D+LG
Sbjct: 61 FLFYGGYEGAERA-VVVFCPRNMPIDYEPDLIGFFKV-----LKICLMSRGSVSHRDYLG 114
Query: 174 SILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYE 233
S++G GI REKIGDI+++ E +V ++ADY+ +LEKVGN+ V + L +L+
Sbjct: 115 SLMGLGIKREKIGDILIKDEH-CLVIVENDVADYIKYNLEKVGNIKVELDYVGLDSLQAR 173
Query: 234 PPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIR 269
+ K +T ASLR+D++ASAGF +SRSK+ IR
Sbjct: 174 EQKVKEIRTTVASLRLDSVASAGFGMSRSKVQEYIR 209
>gi|326203533|ref|ZP_08193397.1| RNA-binding S4 domain protein [Clostridium papyrosolvens DSM 2782]
gi|325986353|gb|EGD47185.1| RNA-binding S4 domain protein [Clostridium papyrosolvens DSM 2782]
Length = 260
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 101/177 (57%), Gaps = 10/177 (5%)
Query: 98 LHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI---VAA 154
++SDFL+P L+++ D GGY AER ++V + + D ++
Sbjct: 35 VYSDFLSPYEASVVKKVLDRVKDAFYKLTGGYEGAERA-ITVISSDFIEEDIPYSTPISL 93
Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 214
L IT SH D+LGS++G GI REKIGDI++ E A V+ ++A+Y++ +L+K
Sbjct: 94 LRITPVID-NKLSHRDYLGSLIGLGIKREKIGDILV-NETFADVFVIDKIAEYILYNLDK 151
Query: 215 VGNVSVSCTRIPLLALEYEPPRTK--SFKTIEASLRVDALASAGFKLSRSKLVNLIR 269
+GNV V C + ++ PP+ K S T ASLR D++AS+GF LSR+K++ +
Sbjct: 152 IGNVKVQCELCDI--YQFTPPQKKERSINTTVASLRADSVASSGFGLSRTKVMEYFK 206
>gi|303230546|ref|ZP_07317300.1| S4 domain protein [Veillonella atypica ACS-049-V-Sch6]
gi|401680660|ref|ZP_10812572.1| S4 domain protein [Veillonella sp. ACP1]
gi|429760793|ref|ZP_19293254.1| S4 domain protein [Veillonella atypica KON]
gi|302514787|gb|EFL56775.1| S4 domain protein [Veillonella atypica ACS-049-V-Sch6]
gi|400218325|gb|EJO49208.1| S4 domain protein [Veillonella sp. ACP1]
gi|429176701|gb|EKY18066.1| S4 domain protein [Veillonella atypica KON]
Length = 261
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 115/204 (56%), Gaps = 9/204 (4%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
EE + +L++A + + DF +P L + ++ + GGY AER R++
Sbjct: 18 EEARRMLDLAEQVVKGKPYRVCDFTSPAGLVIADAIKAAYPELLVQSYGGYEGAERIRIA 77
Query: 139 V--GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
H + T D I+ L ++ + F+ +H D LGS++G GI R K GDII+ G+ GA
Sbjct: 78 FVDSHFQG-TVDMGIIP-LKVSWDPRFRLLNHRDVLGSLMGLGIDRSKFGDIIM-GQGGA 134
Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
Q LV +AD+++ + K+ V+VS T + L + + + K +T ASLR+DA+AS+G
Sbjct: 135 QILVDSAVADFVVQNFTKIAMVAVSVTPMELDEIAPKEEKIKEVRTTVASLRLDAVASSG 194
Query: 257 FKLSRSKLVNLIRYSSLASLVQIS 280
F +SR+KLV+ + A L+Q++
Sbjct: 195 FSVSRTKLVSAVN----AGLLQVN 214
>gi|258514373|ref|YP_003190595.1| RNA-binding S4 domain-containing protein [Desulfotomaculum
acetoxidans DSM 771]
gi|257778078|gb|ACV61972.1| RNA-binding S4 domain protein [Desulfotomaculum acetoxidans DSM
771]
Length = 267
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 96/183 (52%), Gaps = 4/183 (2%)
Query: 83 HILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHP 142
I ++ + + + +DF P + +E + D+K + GGY +AER R+ + P
Sbjct: 29 RIFDLCDKVKNNCRLQVTDFYDPHRMNLIAAMIENM-DLKILLWGGYEEAERKRMLL-VP 86
Query: 143 EALTSD-PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVV 201
E + P + L GNF +H D+LG++LG GI REK+GDII+ E AQ +V
Sbjct: 87 EHYKGEWPSLTGCLLAEGNFKTIEVTHRDYLGALLGLGIKREKLGDIIVL-ENAAQLIVA 145
Query: 202 PELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSR 261
E++D++ +L K+G V VS RI L + K +T SLR D + GF SR
Sbjct: 146 EEISDFIAANLVKIGRVRVSVKRIKEQDLILPEKKFKEIRTTVPSLRFDVICGEGFGTSR 205
Query: 262 SKL 264
SK+
Sbjct: 206 SKI 208
>gi|188585944|ref|YP_001917489.1| RNA-binding S4 domain-containing protein [Natranaerobius
thermophilus JW/NM-WN-LF]
gi|179350631|gb|ACB84901.1| RNA-binding S4 domain protein [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 265
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 94/173 (54%), Gaps = 4/173 (2%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 157
+DF P L + + +DV A+ GG AER ++ + P+ PD + L +
Sbjct: 40 TDFFDPHQLTIAEKVINTFSDVSALFYGGLADAERKKVGI-FPKEWNVTPDQLGIEVLEL 98
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE-LADYLITSLEKVG 216
GNF F SH D LG+++G G+ R+KIGDI + E+ + V E ++ ++ +L +V
Sbjct: 99 RGNFRFSSISHRDVLGAVMGLGLKRDKIGDIHVMEEEHRLIIAVDESISQFITQNLTQVK 158
Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIR 269
NVSVS + + + T+ K +SLR+DA+AS GF SRSK+ LI+
Sbjct: 159 NVSVSAEAMDQEEIPRQQEYTREIKGTVSSLRLDAVASIGFGASRSKMSQLIK 211
>gi|220928051|ref|YP_002504960.1| RNA-binding S4 domain-containing protein [Clostridium
cellulolyticum H10]
gi|219998379|gb|ACL74980.1| RNA-binding S4 domain protein [Clostridium cellulolyticum H10]
Length = 260
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 101/179 (56%), Gaps = 16/179 (8%)
Query: 99 HSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS-- 156
+SDFL+P S L+++ +V GGY AER ++V + + D +S
Sbjct: 36 YSDFLSPYEASVSKKILDRVKEVFYKLTGGYDGAERV-ITVISNDFIEEDIPYSTPISLL 94
Query: 157 ----ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSL 212
+T N SH D+LGS+LG GI REKIGDI++ EK V+ ++A+Y+ +L
Sbjct: 95 RISPVTEN----KLSHRDYLGSLLGLGIKREKIGDILV-SEKCTDVFVIDKIAEYISYNL 149
Query: 213 EKVGNVSVSCTRIPLLALEYEPPRTK--SFKTIEASLRVDALASAGFKLSRSKLVNLIR 269
+K+GN V C + ++ PP+ K S T ASLR D++AS+GF LSR+K+++ +
Sbjct: 150 DKIGNTKVHCELCDI--YQFTPPQKKVRSINTTVASLRADSVASSGFGLSRTKVMDYFK 206
>gi|304404028|ref|ZP_07385690.1| RNA-binding S4 domain protein [Paenibacillus curdlanolyticus YK9]
gi|304347006|gb|EFM12838.1| RNA-binding S4 domain protein [Paenibacillus curdlanolyticus YK9]
Length = 262
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 98/188 (52%), Gaps = 3/188 (1%)
Query: 84 ILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
+ E R S R E +D+L P + + +V GGY +AER R +
Sbjct: 22 VEEWIERCSERHEWKRTDYLDPRQAEIVRALASRNGEVAIRFDGGYEEAERQRAVIAPDY 81
Query: 144 ALTSD-PDIVAALSITGNF-GFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVV 201
A+ D P V A+++T + G HGD+LG++LG G+ RE IGDI + E G +V
Sbjct: 82 AVLDDEPMGVQAIAVTADSQGHLDLDHGDYLGALLGLGVKRELIGDIHVH-EDGCHCMVT 140
Query: 202 PELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSR 261
E+ADY+ L +V V V IPL AL + + ASLR+D +AS ++LSR
Sbjct: 141 EEIADYVNIHLRQVHRVHVLTELIPLSALRVVKSKLEEMSLSVASLRLDGVASDVYRLSR 200
Query: 262 SKLVNLIR 269
+K+V+ IR
Sbjct: 201 AKIVDPIR 208
>gi|307244150|ref|ZP_07526268.1| S4 domain protein [Peptostreptococcus stomatis DSM 17678]
gi|306492521|gb|EFM64556.1| S4 domain protein [Peptostreptococcus stomatis DSM 17678]
Length = 261
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 110/205 (53%), Gaps = 20/205 (9%)
Query: 84 ILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
++++ S+ + +++FL P ++ ++ + D++ +GGY AER + +
Sbjct: 22 LVDICNSVSNSYSLRNTEFLNPYEIRNAISIINYDKDLEYTIEGGYEDAERAVIFIYPDY 81
Query: 144 ALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVP 202
+ + D+ + L I GNF F SH D+LGS++ GI REKIGDI++ + Q +V
Sbjct: 82 YILEEGDLTLTYLEIRGNFKFTTVSHRDYLGSLMSLGIKREKIGDILVHDDY-CQMVVDS 140
Query: 203 ELADYLITSLEKVGNVSVSCTRIPLLALEYEPP----RTKSFKTIEASLRVDALASAGFK 258
++AD++I + ++ N VS T I L +PP K F +SLR+D++ + F
Sbjct: 141 DIADFIIYNYNRIKNNKVSVTEIDKSDL--KPPIKSYDDKVFSI--SSLRLDSVIAGAFN 196
Query: 259 LSR---SKLVNLIRYSSLASLVQIS 280
LSR SKL+N A LVQ++
Sbjct: 197 LSRQEASKLIN-------ADLVQVN 214
>gi|306520977|ref|ZP_07407324.1| putative RNA-binding cell division protein [Clostridium difficile
QCD-32g58]
Length = 252
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 94/180 (52%), Gaps = 4/180 (2%)
Query: 84 ILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
+++ A +V ++FL P +K ++ L ++K GGY QAER + + +P
Sbjct: 22 VIDKANSCIKNYDVKSTEFLNPYEVKNAVAILNSTNEIKYSVDGGYEQAERSTVFI-YPF 80
Query: 144 ALTSDP--DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVV 201
+ + D + L I GNF F+ SH D+LGSILG GI REKIGDII+ + Q +V
Sbjct: 81 YMEYEDIEDTLRFLQIEGNFKFKNISHKDYLGSILGLGIKREKIGDIIIH-DSFCQVVVS 139
Query: 202 PELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSR 261
++ D++I +LEKV +V I + + K +S R+D + S + +SR
Sbjct: 140 SDICDFIIVNLEKVSRNNVIVKEISRENIVNSSSKYKEVSFTVSSDRLDCVISGIYNISR 199
>gi|255656596|ref|ZP_05402005.1| putative RNA-binding cell division protein [Clostridium difficile
QCD-23m63]
gi|296449950|ref|ZP_06891714.1| possible ribosomal protein S4e [Clostridium difficile NAP08]
gi|296878332|ref|ZP_06902340.1| possible ribosomal protein S4e [Clostridium difficile NAP07]
gi|296261220|gb|EFH08051.1| possible ribosomal protein S4e [Clostridium difficile NAP08]
gi|296430630|gb|EFH16469.1| possible ribosomal protein S4e [Clostridium difficile NAP07]
Length = 261
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 94/180 (52%), Gaps = 4/180 (2%)
Query: 84 ILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
+++ A +V ++FL P +K ++ L ++K GGY QAER + + +P
Sbjct: 22 VIDKANSCIKNYDVKSTEFLNPYEVKNAVAILNSTNEIKYSVDGGYEQAERSTVFI-YPF 80
Query: 144 ALTSDP--DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVV 201
+ + D + L I GNF F+ SH D+LGSILG GI REKIGDII+ + Q +V
Sbjct: 81 YMEYEDIEDTLRFLQIEGNFKFKNISHKDYLGSILGLGIKREKIGDIIIH-DSFCQVVVS 139
Query: 202 PELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSR 261
++ D++I +LEKV +V I + + K +S R+D + S + +SR
Sbjct: 140 SDICDFIIVNLEKVSRNNVIVKEISRENIVNSSSKYKEVSFTVSSDRLDCVISGIYNISR 199
>gi|254976209|ref|ZP_05272681.1| putative RNA-binding cell division protein [Clostridium difficile
QCD-66c26]
gi|255093596|ref|ZP_05323074.1| putative RNA-binding cell division protein [Clostridium difficile
CIP 107932]
gi|255307652|ref|ZP_05351823.1| putative RNA-binding cell division protein [Clostridium difficile
ATCC 43255]
gi|255315344|ref|ZP_05356927.1| putative RNA-binding cell division protein [Clostridium difficile
QCD-76w55]
gi|255518009|ref|ZP_05385685.1| putative RNA-binding cell division protein [Clostridium difficile
QCD-97b34]
gi|255651125|ref|ZP_05398027.1| putative RNA-binding cell division protein [Clostridium difficile
QCD-37x79]
gi|260684191|ref|YP_003215476.1| RNA-binding cell division protein [Clostridium difficile CD196]
gi|260687850|ref|YP_003218984.1| RNA-binding cell division protein [Clostridium difficile R20291]
gi|384361833|ref|YP_006199685.1| RNA-binding cell division protein [Clostridium difficile BI1]
gi|423092653|ref|ZP_17080457.1| S4 domain protein [Clostridium difficile 70-100-2010]
gi|260210354|emb|CBA64710.1| putative RNA-binding cell division protein [Clostridium difficile
CD196]
gi|260213867|emb|CBE05880.1| putative RNA-binding cell division protein [Clostridium difficile
R20291]
gi|357553523|gb|EHJ35270.1| S4 domain protein [Clostridium difficile 70-100-2010]
Length = 261
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 94/180 (52%), Gaps = 4/180 (2%)
Query: 84 ILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
+++ A +V ++FL P +K ++ L ++K GGY QAER + + +P
Sbjct: 22 VIDKANSCIKNYDVKSTEFLNPYEVKNAVAILNSTNEIKYSVDGGYEQAERSTVFI-YPF 80
Query: 144 ALTSDP--DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVV 201
+ + D + L I GNF F+ SH D+LGSILG GI REKIGDII+ + Q +V
Sbjct: 81 YMEYEDIEDTLRFLQIEGNFKFKNISHKDYLGSILGLGIKREKIGDIIIH-DSFCQVVVS 139
Query: 202 PELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSR 261
++ D++I +LEKV +V I + + K +S R+D + S + +SR
Sbjct: 140 SDICDFIIVNLEKVSRNNVIVKEISRENIVNSSSKYKEVSFTVSSDRLDCVISGIYNISR 199
>gi|427704338|ref|YP_007047560.1| photosystem II S4 domain-containing protein [Cyanobium gracile PCC
6307]
gi|427347506|gb|AFY30219.1| photosystem II S4 domain protein [Cyanobium gracile PCC 6307]
Length = 257
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 110/208 (52%), Gaps = 5/208 (2%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
DLL+G EE+ + +A A E S FL V +E+ L L+++ ++
Sbjct: 6 DLLEG---SRHPEELGALFSLAETALRTWEPQVSGFLEAAVREEAEDRLGALSELTLASE 62
Query: 127 GGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 186
GG+P AER L + + P ++ L I+GNF F P S D + G+G ++G
Sbjct: 63 GGHPGAERRCLLLARSGQEPTAPALLG-LEISGNFLFDPASAADMAEGLAGSGATAAELG 121
Query: 187 DIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT-KSFKTIEA 245
D+ L+G++GAQ +V LA L + V V V P+ AL+ R + T+EA
Sbjct: 122 DLWLRGDRGAQAIVSEALARRLDGTEGLVRTVPVRFEARPIEALQLPARRLPRQLTTVEA 181
Query: 246 SLRVDALASAGFKLSRSKLVNLIRYSSL 273
SLR+DALASAGF LSR+++ LIR ++
Sbjct: 182 SLRLDALASAGFGLSRNRMATLIRQGAV 209
>gi|297544856|ref|YP_003677158.1| RNA-binding S4 domain-containing protein [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|296842631|gb|ADH61147.1| RNA-binding S4 domain protein [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 248
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 107/188 (56%), Gaps = 10/188 (5%)
Query: 95 REVLHSDFLTPPVLK--ESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIV 152
+ V ++DFL+P K E + + D+ +GGYP AER ++++ + + L + +
Sbjct: 22 KRVKYTDFLSPSEQKIFEKTILKYRQQDINYNLEGGYPFAER-KIAIIYFDFLQPEDTPI 80
Query: 153 AALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSL 212
A+ I GNF SH D LGS+LG GI R+KIGDII++ +K L+ ++ Y++ +
Sbjct: 81 CAVRIEGNFS--NLSHRDVLGSLLGLGIRRQKIGDIIVKEDK-CDILLHKDVESYVLMNF 137
Query: 213 EKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSS 272
KVG V + I L + R K + ASLRVD++A+AGF +SR+K LI+
Sbjct: 138 FKVGKEKVRVSSIDLKDVMEPEIRYKDIFSTVASLRVDSVAAAGFGISRTKASQLIK--- 194
Query: 273 LASLVQIS 280
+ L+QI+
Sbjct: 195 -SGLLQIN 201
>gi|254430233|ref|ZP_05043936.1| photosystem II S4 domain protein [Cyanobium sp. PCC 7001]
gi|197624686|gb|EDY37245.1| photosystem II S4 domain protein [Cyanobium sp. PCC 7001]
Length = 261
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 117/213 (54%), Gaps = 11/213 (5%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
DLL G + + EV +E A RA + + FL VL+E+M L +LA+++ A
Sbjct: 6 DLLAGSRHPDQLVEV---IEAAERALHTWQPQWTGFLEGAVLEEAMARLGQLAELELRAA 62
Query: 127 GGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFG--FQPCSHGDFLGSILGTGIARE 183
GG+ AERCRL + EA L +P L + + F P +F +++ G A
Sbjct: 63 GGHAGAERCRLLLTRREAGLDPEPLDTGLLGLLLSGNFLFDPAEPDEFRSALIQQGWADG 122
Query: 184 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPP---RTKSF 240
IGD+ L+G++GAQ +VV + A+ V +V V+ +PL L +PP + +
Sbjct: 123 AIGDVWLRGDRGAQAIVVAKAAEPTAALTLTVRSVPVTGELVPLALL--QPPARRQPRQL 180
Query: 241 KTIEASLRVDALASAGFKLSRSKLVNLIRYSSL 273
T+EAS R+DA+ASAGF +SR+++V LIR ++
Sbjct: 181 HTVEASTRLDAVASAGFGISRNRMVTLIRDGAV 213
>gi|167037285|ref|YP_001664863.1| RNA-binding S4 domain-containing protein [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167040520|ref|YP_001663505.1| RNA-binding S4 domain-containing protein [Thermoanaerobacter sp.
X514]
gi|256751718|ref|ZP_05492592.1| RNA-binding S4 domain protein [Thermoanaerobacter ethanolicus
CCSD1]
gi|300914567|ref|ZP_07131883.1| RNA-binding S4 domain protein [Thermoanaerobacter sp. X561]
gi|307724197|ref|YP_003903948.1| RNA-binding S4 domain-containing protein [Thermoanaerobacter sp.
X513]
gi|320115701|ref|YP_004185860.1| RNA-binding S4 domain-containing protein [Thermoanaerobacter
brockii subsp. finnii Ako-1]
gi|326389981|ref|ZP_08211544.1| RNA-binding S4 domain protein [Thermoanaerobacter ethanolicus JW
200]
gi|392940765|ref|ZP_10306409.1| hypothetical protein ThesiDRAFT1_2100 [Thermoanaerobacter
siderophilus SR4]
gi|166854760|gb|ABY93169.1| RNA-binding S4 domain protein [Thermoanaerobacter sp. X514]
gi|166856119|gb|ABY94527.1| RNA-binding S4 domain protein [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|256749387|gb|EEU62417.1| RNA-binding S4 domain protein [Thermoanaerobacter ethanolicus
CCSD1]
gi|300889502|gb|EFK84648.1| RNA-binding S4 domain protein [Thermoanaerobacter sp. X561]
gi|307581258|gb|ADN54657.1| RNA-binding S4 domain protein [Thermoanaerobacter sp. X513]
gi|319928792|gb|ADV79477.1| RNA-binding S4 domain protein [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|325994041|gb|EGD52470.1| RNA-binding S4 domain protein [Thermoanaerobacter ethanolicus JW
200]
gi|392292515|gb|EIW00959.1| hypothetical protein ThesiDRAFT1_2100 [Thermoanaerobacter
siderophilus SR4]
Length = 248
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 118/219 (53%), Gaps = 31/219 (14%)
Query: 65 FDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLK--ESMMALEKLADVK 122
F+D++KGV S+R V ++DFL+ K E + + D+
Sbjct: 11 FEDIIKGV------------------LKSKR-VKYTDFLSLSEQKIFEKTILKYRQQDIN 51
Query: 123 AVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAR 182
GGYP AER ++++ +P+ L + + A+ I GNF SH D LGS+LG GI R
Sbjct: 52 YNLDGGYPLAER-KIAIIYPDFLQPEDTPICAVRIEGNFS--KLSHRDVLGSLLGLGIKR 108
Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLL-ALEYEPPRTKSFK 241
+KIGDII++ +K L+ ++ Y++ +L KVG V I L +E E F
Sbjct: 109 QKIGDIIVKEDK-CDILLHKDVESYVLMNLFKVGKEKVRVNSIDLKDVIEPEIKYKDIFS 167
Query: 242 TIEASLRVDALASAGFKLSRSKLVNLIRYSSLASLVQIS 280
T+ ASLRVD++A+AGF +SR+K LI+ + L+QI+
Sbjct: 168 TV-ASLRVDSVAAAGFGISRTKASELIK----SGLLQIN 201
>gi|345017880|ref|YP_004820233.1| RNA-binding S4 domain-containing protein [Thermoanaerobacter
wiegelii Rt8.B1]
gi|344033223|gb|AEM78949.1| RNA-binding S4 domain protein [Thermoanaerobacter wiegelii Rt8.B1]
Length = 248
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 117/219 (53%), Gaps = 31/219 (14%)
Query: 65 FDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLK--ESMMALEKLADVK 122
F+D++KGV S+R V ++DFL+ K E + + D+
Sbjct: 11 FEDIIKGV------------------LKSKR-VKYTDFLSLSEQKIFEKTILKYRQQDIN 51
Query: 123 AVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAR 182
GGYP AER ++++ +P+ L + + A+ I GNF SH D LGS+LG GI R
Sbjct: 52 YNLDGGYPLAER-KIAIIYPDFLQPEDTPICAVRIEGNFS--KLSHRDVLGSLLGLGIKR 108
Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLL-ALEYEPPRTKSFK 241
+KIGDII++ +K L+ ++ Y++ +L KVG V I L LE E F
Sbjct: 109 QKIGDIIVKEDK-CDILLHKDVESYVLMNLFKVGKEKVRVNSIDLKDVLEPEIKYKDIFS 167
Query: 242 TIEASLRVDALASAGFKLSRSKLVNLIRYSSLASLVQIS 280
T+ ASLRVD++A+AGF +SR+K LI + L+QI+
Sbjct: 168 TV-ASLRVDSVAAAGFGISRTKASELIN----SGLLQIN 201
>gi|210622350|ref|ZP_03293119.1| hypothetical protein CLOHIR_01067 [Clostridium hiranonis DSM 13275]
gi|210154338|gb|EEA85344.1| hypothetical protein CLOHIR_01067 [Clostridium hiranonis DSM 13275]
Length = 261
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 99/188 (52%), Gaps = 6/188 (3%)
Query: 84 ILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
+++ A E ++F+ P +K +M + +D+K + GGY AER LS+ +P
Sbjct: 22 LIDKANTCLKNYEAKSTEFMNPFEVKNAMDIINSESDLKYHSDGGYEGAERSVLSI-YPF 80
Query: 144 ALTSDPDI---VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLV 200
+ + DI + + I GNF F+ SH D+LGS+LG GI REKIGDI++ E Q +V
Sbjct: 81 YMEYE-DIEQPIKFIQIDGNFKFRSVSHKDYLGSLLGLGIKREKIGDILIH-EDFCQVIV 138
Query: 201 VPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLS 260
++ DY++ +L KV SV I L+ + K +S R+D + S + +S
Sbjct: 139 SSDICDYIVMNLTKVATNSVKVKEINREELKTSEKKYKDISFTVSSDRLDCVISGIYNIS 198
Query: 261 RSKLVNLI 268
R + + I
Sbjct: 199 RQESLKYI 206
>gi|20808026|ref|NP_623197.1| hypothetical protein TTE1597 [Thermoanaerobacter tengcongensis MB4]
gi|20516604|gb|AAM24801.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis
MB4]
Length = 248
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 103/179 (57%), Gaps = 17/179 (9%)
Query: 99 HSDFLTPPVLKESMMALEKLA------DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI- 151
++DFLT K+ EKLA VK + +GGYP AER ++++ +P+ LT +
Sbjct: 25 YTDFLTLSEQKQ----FEKLALKYKSEGVKYLLEGGYPSAER-KIAIVYPDFLTFREEEL 79
Query: 152 -VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLIT 210
+ AL + G F SH + LGSILG GI REK+GDII++ E ++ E+ D+L+
Sbjct: 80 PIVALRVEGKNRF---SHREVLGSILGLGIKREKVGDIIVK-ESKCDVILKEEMRDFLLF 135
Query: 211 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIR 269
+L K+G SV I L + + K + ASLRVD++A++GF +SR+K LI+
Sbjct: 136 NLTKIGRESVEVHEIELSDVMQPEIKYKDIFSTVASLRVDSVAASGFGISRTKASELIK 194
>gi|227498574|ref|ZP_03928718.1| S4 RNA-binding protein [Acidaminococcus sp. D21]
gi|352684241|ref|YP_004896226.1| S4 RNA-binding protein [Acidaminococcus intestini RyC-MR95]
gi|226904030|gb|EEH89948.1| S4 RNA-binding protein [Acidaminococcus sp. D21]
gi|350278896|gb|AEQ22086.1| S4 RNA-binding protein [Acidaminococcus intestini RyC-MR95]
Length = 261
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 107/203 (52%), Gaps = 6/203 (2%)
Query: 68 LLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQG 127
K GD+ E ++++A +A R + SDF+ P + + + + + G
Sbjct: 10 FFKAGGDE---ELAGKLIDLADQARRNRRYMVSDFMDPHGINVADIVASNYTQITMKSFG 66
Query: 128 GYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 186
G+ AER R++ + +PD +AAL +T + + H D LG+ G G +R+ +G
Sbjct: 67 GFQNAERMRIAY-VVDDFYGEPDFAIAALLVTWDKRYYDVGHRDVLGAFTGMGCSRDILG 125
Query: 187 DIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEAS 246
DI+ E GAQ +V + +++++L ++G +V IPL L+ + R K ++
Sbjct: 126 DIVFTDE-GAQMVVDKTMVPFILSNLTQIGAATVEVKEIPLTELKEKEQRVKVISATVSA 184
Query: 247 LRVDALASAGFKLSRSKLVNLIR 269
LR+DA+A+AGF +SRS++ I+
Sbjct: 185 LRLDAVAAAGFGVSRSRMAEEIK 207
>gi|126700234|ref|YP_001089131.1| RNA-binding cell division protein [Clostridium difficile 630]
gi|255101784|ref|ZP_05330761.1| putative RNA-binding cell division protein [Clostridium difficile
QCD-63q42]
gi|115251671|emb|CAJ69506.1| putative RNA-binding cell division protein [Clostridium difficile
630]
Length = 261
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 94/180 (52%), Gaps = 4/180 (2%)
Query: 84 ILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
+++ A +V ++FL P +K ++ L ++K GGY +AER + + +P
Sbjct: 22 VIDKANSCIKNYDVKSTEFLNPYEVKNAVAILNSTNEIKYSVDGGYERAERSTVFI-YPF 80
Query: 144 ALTSDP--DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVV 201
+ + D + L I GNF F+ SH D+LGSILG GI REKIGDII+ + Q +V
Sbjct: 81 YMEYEDIEDTLRFLQIEGNFKFKNISHKDYLGSILGLGIKREKIGDIIIH-DSFCQVVVS 139
Query: 202 PELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSR 261
++ D++I +LEKV +V I + + K +S R+D + S + +SR
Sbjct: 140 SDICDFIIVNLEKVSRNNVIVKEISRENIVNSSSKYKEVSFTVSSDRLDCVISGIYNISR 199
>gi|124026489|ref|YP_001015604.1| S4-like domain-containing protein [Prochlorococcus marinus str.
NATL1A]
gi|123961557|gb|ABM76340.1| Uncharacterized conserved protein, contains S4-like domain
[Prochlorococcus marinus str. NATL1A]
Length = 262
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 101/200 (50%), Gaps = 6/200 (3%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
+E++ +L A +A S R + S F++ +++E L D+ + +GG+P AER R+
Sbjct: 16 KELETLLHFAEKALSERAAIWSPFISAQLIEEVKNRFNNLNDISLIFEGGFPSAERKRIC 75
Query: 139 VGHPEALTSDPDI---VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
P I + + I GNF F DF + + IGDI L ++G
Sbjct: 76 FLRSVEEMHSPSIEIPIKGIYIKGNFLFDRAKQNDFRDLLYELHAQADDIGDIWLIRDRG 135
Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALE--YEPPRTKSFKTIEASLRVDALA 253
AQ + + AD + + K+ V ++ + L +E + P+ K T+EAS R+DA+A
Sbjct: 136 AQAICTKKCADSINQKIGKLREVEITIHALDLNEMEIPFNRPK-KVINTVEASTRIDAIA 194
Query: 254 SAGFKLSRSKLVNLIRYSSL 273
SAGF LSRSK++ I+ L
Sbjct: 195 SAGFGLSRSKVIKQIKEGCL 214
>gi|423081295|ref|ZP_17069903.1| S4 domain protein [Clostridium difficile 002-P50-2011]
gi|423084646|ref|ZP_17073146.1| S4 domain protein [Clostridium difficile 050-P50-2011]
gi|357550961|gb|EHJ32765.1| S4 domain protein [Clostridium difficile 002-P50-2011]
gi|357552216|gb|EHJ33991.1| S4 domain protein [Clostridium difficile 050-P50-2011]
Length = 261
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 93/180 (51%), Gaps = 4/180 (2%)
Query: 84 ILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
+++ A +V ++FL P +K ++ L ++K GGY QAER + + +P
Sbjct: 22 VIDKANSCIKNYDVKSTEFLNPYEVKNAVAILNSTNEIKYSVDGGYEQAERSTVFI-YPF 80
Query: 144 ALTSDP--DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVV 201
+ + D + L I GNF F+ SH D+LGSIL GI REKIGDII+ + Q +V
Sbjct: 81 YMEYEDIEDTLRFLQIEGNFKFKNISHKDYLGSILSLGIKREKIGDIIIH-DSFCQVVVS 139
Query: 202 PELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSR 261
++ D++I +LEKV +V I + + K +S R+D + S + +SR
Sbjct: 140 SDICDFIIVNLEKVSRNNVIVKEISRENIVNSSSKYKEVSFTVSSDRLDCVISGIYNISR 199
>gi|289578633|ref|YP_003477260.1| RNA-binding S4 domain-containing protein [Thermoanaerobacter
italicus Ab9]
gi|289528346|gb|ADD02698.1| RNA-binding S4 domain protein [Thermoanaerobacter italicus Ab9]
Length = 248
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 111/198 (56%), Gaps = 12/198 (6%)
Query: 95 REVLHSDFLTPPVLK--ESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIV 152
+ V ++DFL+P K E + + D+ GGYP AER ++++ + + L + +
Sbjct: 22 KRVKYTDFLSPSEQKIFEKTILKYRQQDINYNLDGGYPFAER-KIAIIYFDFLQPEETPI 80
Query: 153 AALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSL 212
A+ I GNF SH D LGS+LG GI R+KIGDII++ +K L+ ++ Y++ +
Sbjct: 81 CAVRIEGNFS--NLSHRDVLGSLLGLGIRRQKIGDIIVKEDK-CDILLHKDVESYVLMNF 137
Query: 213 EKVGNVSVSCTRIPLL-ALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYS 271
KVG V I L +E E F T+ ASLRVD++A+AGF +SR+K LI+
Sbjct: 138 FKVGKEKVRINSIDLKDVMEPEIKYKDIFSTV-ASLRVDSIAAAGFGISRTKASQLIK-- 194
Query: 272 SLASLVQISAKASAIRSS 289
+ L+Q++ + + SS
Sbjct: 195 --SGLLQVNWEYTGDPSS 210
>gi|125973307|ref|YP_001037217.1| RNA-binding S4 protein [Clostridium thermocellum ATCC 27405]
gi|256003788|ref|ZP_05428776.1| RNA-binding S4 domain protein [Clostridium thermocellum DSM 2360]
gi|281417510|ref|ZP_06248530.1| RNA-binding S4 domain protein [Clostridium thermocellum JW20]
gi|385778780|ref|YP_005687945.1| RNA-binding S4 domain-containing protein [Clostridium thermocellum
DSM 1313]
gi|419723203|ref|ZP_14250338.1| RNA-binding S4 domain protein [Clostridium thermocellum AD2]
gi|419724893|ref|ZP_14251948.1| RNA-binding S4 domain protein [Clostridium thermocellum YS]
gi|125713532|gb|ABN52024.1| RNA-binding S4 domain protein [Clostridium thermocellum ATCC 27405]
gi|255992349|gb|EEU02443.1| RNA-binding S4 domain protein [Clostridium thermocellum DSM 2360]
gi|281408912|gb|EFB39170.1| RNA-binding S4 domain protein [Clostridium thermocellum JW20]
gi|316940460|gb|ADU74494.1| RNA-binding S4 domain protein [Clostridium thermocellum DSM 1313]
gi|380771513|gb|EIC05378.1| RNA-binding S4 domain protein [Clostridium thermocellum YS]
gi|380780970|gb|EIC10633.1| RNA-binding S4 domain protein [Clostridium thermocellum AD2]
Length = 263
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/180 (38%), Positives = 96/180 (53%), Gaps = 6/180 (3%)
Query: 99 HSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG---HPEALTSD-PDIVAA 154
HSDFL P LE V GG+ AER + PE + S+
Sbjct: 37 HSDFLDPYQQNVVRKCLEMSGIRDHVFYGGFSGAERTVVVFCPYYMPENIESEFSGFFEI 96
Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 214
L I N + SH D+LGS++G GI REKIGDI+++ E A +V+ ++ADY+ +L K
Sbjct: 97 LKIKPN-TRENFSHRDYLGSLMGLGIKREKIGDILVR-EDFAFVVVLKDIADYIRINLTK 154
Query: 215 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSLA 274
VGN V + L+ P+ K + ASLR+D++ASAGF +SRSK +LIR +A
Sbjct: 155 VGNARVEIDIVNPDELDILEPKVKEISSTVASLRLDSVASAGFGISRSKTADLIRGEKVA 214
>gi|323140386|ref|ZP_08075316.1| S4 domain protein [Phascolarctobacterium succinatutens YIT 12067]
gi|322415142|gb|EFY05931.1| S4 domain protein [Phascolarctobacterium succinatutens YIT 12067]
Length = 261
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 100/187 (53%), Gaps = 3/187 (1%)
Query: 84 ILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
+L++A A+ R+ S+FL P + + +V+ + GG+ AER + + +
Sbjct: 23 LLDLAEGANKSRKFRVSEFLDPHAYNVAEIIAANYENVRLESDGGFSNAERVKAAF-VAD 81
Query: 144 ALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVP 202
PD +A + + SH D LG+ +GTG RE +GDI+ E GAQF+V
Sbjct: 82 DFYGQPDFGMAYFLAAWDKRYYDLSHRDILGAFMGTGCKREALGDIVFVPE-GAQFVVEK 140
Query: 203 ELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRS 262
L +YL +L ++G+ V+ T IP L ++ + K A LR+DA+A+AG+ +SRS
Sbjct: 141 SLVNYLTGNLTQIGSAPVTLTEIPREELLHKEEKVKLINATVADLRLDAVAAAGYGVSRS 200
Query: 263 KLVNLIR 269
++ + I+
Sbjct: 201 RMADEIK 207
>gi|289423170|ref|ZP_06424985.1| RNA-binding S4 domain protein [Peptostreptococcus anaerobius 653-L]
gi|289156501|gb|EFD05151.1| RNA-binding S4 domain protein [Peptostreptococcus anaerobius 653-L]
Length = 260
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 101/197 (51%), Gaps = 13/197 (6%)
Query: 76 NAIEEVKHILEMARRASSRREVLHS------DFLTPPVLKESMMALEKLADVKAVAQGGY 129
N I++ + ++M R S VL S +FL P +K ++ L D+K +GGY
Sbjct: 8 NHIKDEELKVKMYRVIDSCNSVLKSHSIRSTEFLNPYEVKNAVAILNTEPDLKYKLEGGY 67
Query: 130 PQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
A R + + S+ + ++GNF F+ SH D+LGSILG GI REK+GDI+
Sbjct: 68 DGAIRSVMLISQYYCDLSEESSIRCFQVSGNFKFKSVSHRDYLGSILGLGIKREKLGDIL 127
Query: 190 LQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSF--KTIE-AS 246
+ E Q +V ++ DY++ +LEKV V+ I + + P F K I AS
Sbjct: 128 VH-EDYCQIIVSSDMGDYVLYNLEKVARNRVTVKEIGICDI---IPVEDEFDIKNISVAS 183
Query: 247 LRVDALASAGFKLSRSK 263
LR+D + + F LSR +
Sbjct: 184 LRLDGIIAGVFNLSRQE 200
>gi|332798174|ref|YP_004459673.1| RNA-binding S4 domain-containing protein [Tepidanaerobacter
acetatoxydans Re1]
gi|438001091|ref|YP_007270834.1| FIG001583: hypothetical protein, contains S4-like RNA binding
domain [Tepidanaerobacter acetatoxydans Re1]
gi|332695909|gb|AEE90366.1| RNA-binding S4 domain protein [Tepidanaerobacter acetatoxydans Re1]
gi|432177885|emb|CCP24858.1| FIG001583: hypothetical protein, contains S4-like RNA binding
domain [Tepidanaerobacter acetatoxydans Re1]
Length = 254
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 107/196 (54%), Gaps = 9/196 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
++ I +AR+ ++ S+FL P + + M + GGY +AER ++ V
Sbjct: 13 IRDIFTIARKNRGKK---ASNFLDPGQQQMAEMVARSFPGMGFYFNGGYEKAER-KILVA 68
Query: 141 HPEALTSDP--DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+PE + +P + + AL I + H D+LG+IL GI REK+GDI++ G+ A
Sbjct: 69 YPEDMLDEPFREPLGALRIIPKNSDEHPGHRDYLGAILALGINREKLGDILV-GKTSADI 127
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPR-TKSFKTIEASLRVDALASAGF 257
+V E+ +Y+ +L+K+ NVSV I L L +P R K K+ ASLR+DA+A F
Sbjct: 128 VVKQEIMEYIGLNLKKIRNVSVEVEEISLKEL-LQPERPYKELKSTVASLRLDAIAGIAF 186
Query: 258 KLSRSKLVNLIRYSSL 273
+SRSK+ I+ ++
Sbjct: 187 GISRSKMAPFIKGENI 202
>gi|334133974|ref|ZP_08507509.1| S4 domain protein [Paenibacillus sp. HGF7]
gi|333608482|gb|EGL19779.1| S4 domain protein [Paenibacillus sp. HGF7]
Length = 259
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 99/177 (55%), Gaps = 5/177 (2%)
Query: 92 SSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPD 150
++ +V +DFL P + + DV GGYP AER R +G P+ L S D
Sbjct: 27 AAHHKVKRTDFLDPRQAFILRTLVNRNPDVNCRLDGGYPDAERQRAILG-PDYLDLSGED 85
Query: 151 I-VAALSI-TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYL 208
+ + LS+ +G+ FQ SHGD++G+IL G+ R+K+GDI + E+G F+V E ADYL
Sbjct: 86 MGLRVLSVESGDSKFQALSHGDYMGAILALGMKRDKVGDINVS-EQGCHFVVAEEAADYL 144
Query: 209 ITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 265
+L +V V V+ +P+ L + + ASLR+D + S F+LSR+K++
Sbjct: 145 HLNLSQVHRVHVTTEILPIDKLRPSAVKLEEMSLSVASLRLDGIVSDVFRLSRAKVL 201
>gi|317969027|ref|ZP_07970417.1| RNA-binding S4 [Synechococcus sp. CB0205]
Length = 260
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 114/211 (54%), Gaps = 6/211 (2%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
D LL+G + A+ + + E A R E + S FL +L+E+ L L ++ +
Sbjct: 5 DQLLQGCRNPEAMGALISLAEQALRTW---EPVWSYFLAADLLEEAQERLGSLTELTLSS 61
Query: 126 QGGYPQAERCRLSVGHPEALTSD-PDI-VAALSITGNFGFQPCSHGDFLGSILGTGIARE 183
GG+PQAER RL + E ++ P+ + L ITGNF F P D ++ G
Sbjct: 62 DGGWPQAERRRLLLRRVEISDAERPEAPLQGLVITGNFLFDPAEPLDVRQGLIQAGAQAG 121
Query: 184 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT-KSFKT 242
+GDI ++G++GAQ ++ E+A+ V +V +S + + AL+ RT K +
Sbjct: 122 DLGDIWMRGDRGAQLILRQEVAEAWGGRTALVRSVEISTEAVAVSALQLPASRTPKQLSS 181
Query: 243 IEASLRVDALASAGFKLSRSKLVNLIRYSSL 273
+EASLR+DA+ASAG +SRSK+ + IR ++
Sbjct: 182 VEASLRLDAVASAGLGVSRSKMADWIRAGAV 212
>gi|72382767|ref|YP_292122.1| RNA-binding S4 [Prochlorococcus marinus str. NATL2A]
gi|72002617|gb|AAZ58419.1| RNA-binding S4 [Prochlorococcus marinus str. NATL2A]
Length = 262
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 98/199 (49%), Gaps = 4/199 (2%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
+E++ +L A +A S R + S FL+ +++E L D+ + +GG+P AER R+
Sbjct: 16 KELETLLHFAEKALSERTAIWSPFLSAQLIEEVKDRFNNLNDISLLFEGGFPSAERKRIC 75
Query: 139 VGHPEALTSDPDI---VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
P I + + I GNF F DF I + IGDI L ++G
Sbjct: 76 FLRSVEEMHSPSIEIPIKGIYIKGNFLFDRAKQSDFRDLIHELHDQADDIGDIWLIRDRG 135
Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPR-TKSFKTIEASLRVDALAS 254
AQ + + AD + + K+ V + + L +E R K T+EAS R+DA+AS
Sbjct: 136 AQAICTKKCADSINQKIGKLREVEIIIHALDLNEMEIPFNRPEKVINTVEASTRIDAIAS 195
Query: 255 AGFKLSRSKLVNLIRYSSL 273
AGF LSRSK++ I+ L
Sbjct: 196 AGFGLSRSKIIKQIKEGCL 214
>gi|121535251|ref|ZP_01667065.1| RNA-binding S4 domain protein [Thermosinus carboxydivorans Nor1]
gi|121306136|gb|EAX47064.1| RNA-binding S4 domain protein [Thermosinus carboxydivorans Nor1]
Length = 262
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 97/185 (52%), Gaps = 7/185 (3%)
Query: 83 HILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHP 142
+L+ A R+ S FL P + A ++ + GGY AER + H
Sbjct: 23 RLLDYAETVLRTRKYRASHFLDPFGFSVAETIAAHFAPLRLESSGGYEGAERVKAVFVHE 82
Query: 143 EALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVP 202
+ L S +AA+ I + + SH D LG+++G GI R+ +GDII+ G GAQ +V
Sbjct: 83 DFLGSIDFAIAAVGIAWDARYYELSHRDMLGALMGLGIDRDVVGDIIMTG-SGAQVVVDT 141
Query: 203 ELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA---SLRVDALASAGFKL 259
+A ++ T+L KVG V+ IPL + PR + K I A SLR+D +A+AGF L
Sbjct: 142 AMAGFIETNLTKVGAAPVAVKIIPLSDI---APRIEKVKEIRATVPSLRLDVVAAAGFGL 198
Query: 260 SRSKL 264
SR+K+
Sbjct: 199 SRTKM 203
>gi|357008377|ref|ZP_09073376.1| RNA-binding S4 domain-containing protein [Paenibacillus elgii B69]
Length = 260
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 95/172 (55%), Gaps = 11/172 (6%)
Query: 100 SDFLTPPVLKESMMALEKLA----DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAA 154
+DFL P + L LA DV+ GG+P AER R V + D ++ ++
Sbjct: 36 TDFLDP----RQIFILTTLANRNPDVQVRFDGGHPDAERKRALVAPDYRVLDDEEMGISL 91
Query: 155 LSITG-NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
+ IT + + HGDF+G+ILG GI R+KIGDI ++ E G FLV E+ADY+ +L
Sbjct: 92 IEITSEDEKLKELDHGDFMGAILGLGIKRDKIGDIYVR-EDGCHFLVASEIADYIRLNLS 150
Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 265
+V + V ++PL L+ + ASLR+D +AS ++LSR+K++
Sbjct: 151 QVHRLHVRTEQLPLGKLKATETKLDEMFLSVASLRLDGIASDVYRLSRAKVL 202
>gi|429727341|ref|ZP_19262115.1| S4 domain protein [Peptostreptococcus anaerobius VPI 4330]
gi|429152793|gb|EKX95603.1| S4 domain protein [Peptostreptococcus anaerobius VPI 4330]
Length = 260
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 100/195 (51%), Gaps = 13/195 (6%)
Query: 76 NAIEEVKHILEMARRASSRREVLHS------DFLTPPVLKESMMALEKLADVKAVAQGGY 129
N I++ + ++M R S VL S +FL P +K ++ L D+K +GGY
Sbjct: 8 NHIKDEELKVKMYRVIDSCNSVLKSHSIRTTEFLNPYEVKNAVAILNTEPDLKYKLEGGY 67
Query: 130 PQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
A R + + S+ + ++GNF F+ SH D+LGSILG GI REK+GDI+
Sbjct: 68 DGAIRSVMLISQYYCDLSEESSIRCFQVSGNFKFKSVSHRDYLGSILGLGIKREKLGDIL 127
Query: 190 LQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSF--KTIE-AS 246
+ E Q +V ++ DY++ +LE+V V+ I + + P F K I AS
Sbjct: 128 VH-EDYCQIIVSSDMGDYVLYNLERVARNRVTVKEIGISDI---IPVEDEFDIKNISVAS 183
Query: 247 LRVDALASAGFKLSR 261
LR+D + + F LSR
Sbjct: 184 LRLDGIIAGVFNLSR 198
>gi|421074254|ref|ZP_15535294.1| RNA-binding S4 domain protein [Pelosinus fermentans JBW45]
gi|392527760|gb|EIW50846.1| RNA-binding S4 domain protein [Pelosinus fermentans JBW45]
Length = 261
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 98/182 (53%), Gaps = 3/182 (1%)
Query: 84 ILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
+L++A A R+ ++FL P + +K V+ GGY AER + +V E
Sbjct: 23 LLDLAEAALRNRKYKVTEFLDPYGYSIAETIGAHYDRLKLVSSGGYDGAERVK-AVFVNE 81
Query: 144 ALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVP 202
PD+ V A+S+T + + +H D LG+++ GI RE IGDII+ G G Q ++
Sbjct: 82 EFRGTPDVAVEAVSVTWDERYYQITHRDVLGALMALGIKREIIGDIIMCGH-GCQIIIDS 140
Query: 203 ELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRS 262
++L+ + K+G +S ++ + + + + K KT ASLR+D +A+AGF SRS
Sbjct: 141 SFFNFLMQNFSKIGAAPISIAQLKIADIAHREEKVKEIKTTVASLRLDVIAAAGFGTSRS 200
Query: 263 KL 264
++
Sbjct: 201 RM 202
>gi|312899018|ref|ZP_07758405.1| S4 domain protein [Megasphaera micronuciformis F0359]
gi|310619925|gb|EFQ03498.1| S4 domain protein [Megasphaera micronuciformis F0359]
Length = 261
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 102/206 (49%), Gaps = 1/206 (0%)
Query: 64 NFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKA 123
N D++++ + E ++++A + R S+F +P ++ ++
Sbjct: 3 NRDNIIRYYKGMDNGEFAARLIDLADSTNKGRPYAVSEFASPGAVQIGETVKAHATGLEL 62
Query: 124 VAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIARE 183
GGY AER +L+ + + A +T + ++ H D LGS+ G GI R
Sbjct: 63 RINGGYEGAERVKLAFVRQDYDGPVDFGITACRLTWDVRYRLLGHRDVLGSLTGLGIDRS 122
Query: 184 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTI 243
+ GDII+ E GA L L DYL +LEK+ V+V+ T IPL + + K KT
Sbjct: 123 RFGDIIMH-EDGAVILADSTLYDYLRQNLEKIAMVTVTVTEIPLSDIPPRKEKVKEVKTT 181
Query: 244 EASLRVDALASAGFKLSRSKLVNLIR 269
ASLR+DA+ S+GF +SR+K I+
Sbjct: 182 VASLRLDAIVSSGFGISRTKAAEAIK 207
>gi|397905182|ref|ZP_10506053.1| FIG001583: hypothetical protein, contains S4-like RNA binding
domain [Caloramator australicus RC3]
gi|397161831|emb|CCJ33387.1| FIG001583: hypothetical protein, contains S4-like RNA binding
domain [Caloramator australicus RC3]
Length = 251
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 96/180 (53%), Gaps = 10/180 (5%)
Query: 92 SSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQA--ERCRLSVGHPEALTSDP 149
S + + + +DFL P E AL++L + V + + ER +G + +
Sbjct: 26 SKKWQTVFTDFLNP----EEQAALKELCSDEGVEVCFFDEGKLERTIAKLGLNDDIEYPI 81
Query: 150 DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLI 209
D+ L I GNF F+ H D+LG+IL GI REKIGDI + E GA+ V+ EL+DY++
Sbjct: 82 DV---LKIEGNFKFEQLEHRDYLGAILSLGIKREKIGDINVY-EDGAEVYVLKELSDYIL 137
Query: 210 TSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIR 269
+L ++ + SV +I L + + K F ASLR+DA+ + +SR+K LIR
Sbjct: 138 LNLTQIKHTSVKIKKISLQEAREKQVKFKEFNINIASLRLDAIVAELIGVSRNKASELIR 197
>gi|373115649|ref|ZP_09529818.1| hypothetical protein HMPREF0995_00654 [Lachnospiraceae bacterium
7_1_58FAA]
gi|371670171|gb|EHO35257.1| hypothetical protein HMPREF0995_00654 [Lachnospiraceae bacterium
7_1_58FAA]
Length = 266
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 107/194 (55%), Gaps = 19/194 (9%)
Query: 85 LEMARRASSRREVLHSDFLTPPVLKESMMALEKLADV----KAVAQGGYPQAER--CRLS 138
LE+AR+ R +DFL+P + +++E L + + + GGY AER C
Sbjct: 27 LELARQ---RNIPACTDFLSP----QERVSVENLLNACGHPRHLFFGGYEGAERTVCAFL 79
Query: 139 VGHPEALTSDPD----IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEK 194
EA D V AL T + G Q +H DFLGS+LG G+ REK+GD+++ +
Sbjct: 80 PDWQEAEDWQGDGESCPVRALRCTWSGG-QKLTHRDFLGSVLGLGLDREKVGDLLVADGR 138
Query: 195 GAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALAS 254
L + E+AD+L+ +E+ G V + C+ +PL LE T++ + +SLR+DA+A+
Sbjct: 139 -CDVLALEEVADFLVFHMEQAGRVKLKCSPLPLDRLEPPAVETRTIRDTVSSLRLDAVAA 197
Query: 255 AGFKLSRSKLVNLI 268
+GF LSR K +LI
Sbjct: 198 SGFSLSRGKAADLI 211
>gi|402815868|ref|ZP_10865460.1| putative RNA-binding protein YlmH [Paenibacillus alvei DSM 29]
gi|402506908|gb|EJW17431.1| putative RNA-binding protein YlmH [Paenibacillus alvei DSM 29]
Length = 263
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 99/187 (52%), Gaps = 5/187 (2%)
Query: 86 EMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL 145
E RA+ E+ +DFL P + + ADV+ GG+ AER R + P+ +
Sbjct: 24 EWVERAAQLHEIRRTDFLDPRQAFILTTLVNRNADVQLRLDGGHEHAERKRALIA-PDYV 82
Query: 146 TSDPDIVAA--LSITG-NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVP 202
++ + + L IT + ++ HGDFLG++LG GI R+KIGDI + ++ ++
Sbjct: 83 YAEGEEMGMHILQITSLDRNWEQLEHGDFLGAVLGLGIKRDKIGDIHVSDDR-CHIVITE 141
Query: 203 ELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRS 262
E+ +L T L +V V+V +PL L+ K ASLR+D +AS F+LSR+
Sbjct: 142 EIGAFLDTHLRQVHRVNVLTDIVPLSELQATHAELKMMTLSVASLRLDGIASDVFRLSRT 201
Query: 263 KLVNLIR 269
K+V I+
Sbjct: 202 KIVTPIK 208
>gi|365843208|ref|ZP_09384157.1| S4 domain protein [Flavonifractor plautii ATCC 29863]
gi|364573034|gb|EHM50556.1| S4 domain protein [Flavonifractor plautii ATCC 29863]
Length = 266
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 100/190 (52%), Gaps = 11/190 (5%)
Query: 85 LEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER--CRLSVGHP 142
LE+AR+ R + FL+P L + + GGY AER C
Sbjct: 27 LELARQ---RNIPTCTGFLSPQERASVENLLNACGHPRHIFFGGYEGAERTVCAFLPDWQ 83
Query: 143 EALTSDPD----IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
EA D V AL T + G Q +H DFLGSILG G+ REK+GD+++ +
Sbjct: 84 EAEDWQGDGESCPVRALRCTWSGG-QKLTHRDFLGSILGLGLDREKVGDLLVTDGR-CDV 141
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
L + E+AD+L+ +E+ G V + C+ +PL LE T++ + +SLR+DA+A++GF
Sbjct: 142 LALEEVADFLVFHMEQAGRVKLKCSPLPLDRLEPPAVETRTIRDTVSSLRLDAVAASGFS 201
Query: 259 LSRSKLVNLI 268
LSR K +LI
Sbjct: 202 LSRGKAADLI 211
>gi|392960481|ref|ZP_10325949.1| RNA-binding S4 domain protein [Pelosinus fermentans DSM 17108]
gi|421054762|ref|ZP_15517727.1| RNA-binding S4 domain protein [Pelosinus fermentans B4]
gi|421061533|ref|ZP_15523848.1| RNA-binding S4 domain protein [Pelosinus fermentans B3]
gi|421066814|ref|ZP_15528368.1| RNA-binding S4 domain protein [Pelosinus fermentans A12]
gi|421071625|ref|ZP_15532741.1| RNA-binding S4 domain protein [Pelosinus fermentans A11]
gi|392440443|gb|EIW18123.1| RNA-binding S4 domain protein [Pelosinus fermentans B4]
gi|392446890|gb|EIW24161.1| RNA-binding S4 domain protein [Pelosinus fermentans A11]
gi|392449284|gb|EIW26413.1| RNA-binding S4 domain protein [Pelosinus fermentans B3]
gi|392453094|gb|EIW29998.1| RNA-binding S4 domain protein [Pelosinus fermentans A12]
gi|392455058|gb|EIW31865.1| RNA-binding S4 domain protein [Pelosinus fermentans DSM 17108]
Length = 261
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 97/182 (53%), Gaps = 3/182 (1%)
Query: 84 ILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
+L++A A R+ ++FL P + +K VA GGY AER + +V E
Sbjct: 23 LLDLAEAALRNRKYKVTEFLDPYGYSIAETIGAHYDRLKLVASGGYDGAERVK-AVFINE 81
Query: 144 ALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVP 202
PD V A+S+T + + +H D LG+++ GI RE IGDII+ G G Q ++
Sbjct: 82 EFRGTPDAAVEAVSVTWDERYYQITHRDVLGALMALGIKREIIGDIIMCGH-GCQIIIDS 140
Query: 203 ELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRS 262
++L+ + K+G +S T++ + + + K KT ASLR+D +A+AGF SRS
Sbjct: 141 SFFNFLMQNFSKIGAAPISITQLKIADIAPREEKVKEIKTTVASLRLDVIAAAGFGTSRS 200
Query: 263 KL 264
++
Sbjct: 201 RM 202
>gi|357037201|ref|ZP_09099001.1| RNA-binding S4 domain protein [Desulfotomaculum gibsoniae DSM 7213]
gi|355361366|gb|EHG09121.1| RNA-binding S4 domain protein [Desulfotomaculum gibsoniae DSM 7213]
Length = 273
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 95/172 (55%), Gaps = 6/172 (3%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
+DF P A+ L D+ V GGYP AER R+ + D D ++ L++
Sbjct: 47 TDFYDPYRCAMIARAMGYLPDLAVVVDGGYPAAERSRVLIFPDYMFAGDVDTGLSFLAVK 106
Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 218
G+F F +H D+LG++LG G+ REK+GDI++ GE GAQ +V E+ D++ L VG V
Sbjct: 107 GSFRFNTVTHRDYLGALLGLGLRREKLGDILV-GEDGAQLVVAAEVVDFIKMGLTGVGRV 165
Query: 219 SVSCTRIPLLALEYEPP--RTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
V+ I E +PP + K SLR+DA+A+ GF LSR+K+ I
Sbjct: 166 RVTVHEIN--RAEVKPPARDYREIKVTVQSLRLDAVAAHGFGLSRTKMAGEI 215
>gi|326791369|ref|YP_004309190.1| RNA-binding S4 domain-containing protein [Clostridium lentocellum
DSM 5427]
gi|326542133|gb|ADZ83992.1| RNA-binding S4 domain protein [Clostridium lentocellum DSM 5427]
Length = 259
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 106/205 (51%), Gaps = 7/205 (3%)
Query: 69 LKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQ 126
L + D + VK +LE ++R+ + + +DF L SM+ +E+
Sbjct: 5 LNHINDADEKRFVKMMLEYSKRSEQQFRPIFTDFYNKEWLL-SMIDRYIEESTKQMCYFY 63
Query: 127 GGYPQAERCRLSVGHPEALTSDPDIVA-ALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
GG+ +AER L + E D I+A L + G + +H D+LG++LG GI RE I
Sbjct: 64 GGFEEAERQVLGIAPYEIQEEDFPIMALELKVKTGIG-KALTHRDYLGALLGLGIERETI 122
Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNV-SVSCTRIPLLALEYEPPRTKSFKTIE 244
GDI+++ GA + + Y+ ++L +G ++ IP L+ PP+ KS++T
Sbjct: 123 GDIVIK-PFGAYIIANESMVSYIYSNLLSIGKCQNIEQQVIPFSQLQINPPQIKSYETTV 181
Query: 245 ASLRVDALASAGFKLSRSKLVNLIR 269
ASLR+D + +AGF LSR LI+
Sbjct: 182 ASLRLDVIVAAGFGLSRGVCTKLIQ 206
>gi|78779838|ref|YP_397950.1| RNA-binding S4 [Prochlorococcus marinus str. MIT 9312]
gi|78713337|gb|ABB50514.1| RNA-binding S4 [Prochlorococcus marinus str. MIT 9312]
Length = 263
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 108/215 (50%), Gaps = 10/215 (4%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
DL + + + N EE + ++ +A A E + F + V +E E L D K
Sbjct: 3 DLKEILINSNYKEETEELINIANLAYKHWETYWTGFNSTYVCEEISKDFENLNDFKFFVY 62
Query: 127 GGYPQAERCRL------SVGHPEALTSD-PDIVAALSITGNFGFQPCSHGDFLGSILGTG 179
GG+ ++R R+ ++ +AL S+ P + I GNF F + DF ++ G
Sbjct: 63 GGFSSSQRSRIACFRGDNIPEEDALKSNFP--AQGIKINGNFLFDNATQDDFRSLLIENG 120
Query: 180 IAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKS 239
+ + K+GDI G++GAQ ++ ++L + + +V V + + L+ RTK
Sbjct: 121 VHKVKVGDIWTIGDRGAQGIIDNLDIEHLNEKIFYLRDVKVKINLVGIDELQIPSGRTKK 180
Query: 240 F-KTIEASLRVDALASAGFKLSRSKLVNLIRYSSL 273
T+EAS R+DA+ASAGF++SR+K++ I L
Sbjct: 181 LVNTVEASTRLDAIASAGFRISRTKIIERIENGML 215
>gi|366166912|ref|ZP_09466667.1| RNA-binding S4 protein [Acetivibrio cellulolyticus CD2]
Length = 263
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 95/173 (54%), Gaps = 4/173 (2%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEA-LTSDPDIVAALSI- 157
+DFL P + LE + GGY AER ++ L +P++ +
Sbjct: 38 TDFLDPHLQSVVSKCLESNNVGNYLFYGGYDGAERAVVAFCPSNMPLIQEPELAGLFKVL 97
Query: 158 -TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
+ +H D+LGS++G GI REKIGDI+++ E + + + ++AD++ +L+KVG
Sbjct: 98 KISLMHRENMTHRDYLGSLMGLGIKREKIGDILVKDEH-SLVVALNDIADFIRHNLDKVG 156
Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIR 269
NV V + + +L + K +T ASLR+D++ASAGF +SRSK+ + I+
Sbjct: 157 NVKVEVEYLDVESLNTYEQKVKEIRTTVASLRLDSVASAGFGMSRSKIADFIK 209
>gi|373455824|ref|ZP_09547647.1| hypothetical protein HMPREF9453_01816 [Dialister succinatiphilus
YIT 11850]
gi|371934496|gb|EHO62282.1| hypothetical protein HMPREF9453_01816 [Dialister succinatiphilus
YIT 11850]
Length = 263
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 90/166 (54%), Gaps = 5/166 (3%)
Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNF 161
F+ P + + VK+ A GGY +AER R++ + + LS+T +
Sbjct: 43 FMAPFARQIGQTIAAHMKTVKSTAFGGYHEAERVRIAFQRVDYDGPVDFSESLLSVTWDG 102
Query: 162 GFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVS 221
++ H D LGS++G GI R GDI++QG G Q +V + D+L+ + +KV V V
Sbjct: 103 RYRLIGHRDVLGSLMGLGIDRSVTGDILMQG-AGCQIVVDSAMKDWLMDNFKKVAMVPVK 161
Query: 222 CTRIPLLALEYEPPR--TKSFKTIEASLRVDALASAGFKLSRSKLV 265
IPL + +PP+ K + ASLR+DA+ +AGF +SRSK+V
Sbjct: 162 VEEIPLS--DIQPPKQTAKEVRATVASLRLDAVGAAGFGISRSKMV 205
>gi|403379008|ref|ZP_10921065.1| RNA-binding S4 domain-containing protein [Paenibacillus sp. JC66]
Length = 259
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 96/191 (50%), Gaps = 4/191 (2%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V E +A R EV +DFL P + + VK GG +AER R +
Sbjct: 17 VNKAWEWIEKAEHRHEVRLTDFLDPRQAYVVSTLVNRTTQVKLHLSGGSDEAERKRAWIA 76
Query: 141 HPEALT-SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
P+ L ++ D + L++ + HGD++G++LG G+ R+KIGDI +Q E G +
Sbjct: 77 -PDYLHPAETDFSMCVLAVDAGEEGRALDHGDYMGAVLGLGLKRDKIGDIHVQ-ESGCHY 134
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
++ E+ DYL L +V + V +PL L+ + + ASLR+DAL FK
Sbjct: 135 VIAQEVGDYLNLHLRQVHRIHVHTELLPLSELKPTTSKLEEMSFTVASLRLDALVGDVFK 194
Query: 259 LSRSKLVNLIR 269
+SR+K + I+
Sbjct: 195 MSRAKALQPIK 205
>gi|255280915|ref|ZP_05345470.1| S4 domain protein [Bryantella formatexigens DSM 14469]
gi|255268363|gb|EET61568.1| S4 domain protein [Marvinbryantia formatexigens DSM 14469]
Length = 268
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 110/215 (51%), Gaps = 25/215 (11%)
Query: 76 NAIEEV--KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAE 133
N EE+ K +LE+A++A SR V +DFL L + L+ VK V GGY QAE
Sbjct: 2 NYEEELFQKRLLELAKKADSRNIVTFTDFLNLNELNIYHQSAGALSFVKCVGFGGYEQAE 61
Query: 134 RCRLSVGHPEAL---TSD----PDIVAALSITGNF-----GFQP--------CSHGDFLG 173
R L+ P+AL T D D AL + + +P SH DFLG
Sbjct: 62 RQILAF-IPDALCYFTEDFADRTDFSVALRQSVRYPISCLRIEPQNKKFSGSLSHRDFLG 120
Query: 174 SILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYE 233
+ L TGI R IGDI+++ E A + +AD+L +L +V N V+ ++P ++Y
Sbjct: 121 AALNTGIERSTIGDILVE-ENAAWMFCLERMADFLSEALTRVRNTPVNVRQVPPEKIDY- 178
Query: 234 PPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
P+ + + AS+R+D+L + F SRS LV LI
Sbjct: 179 APKYELVRGSVASVRLDSLLALAFGASRSSLVGLI 213
>gi|302388662|ref|YP_003824483.1| RNA-binding S4 domain-containing protein [Thermosediminibacter
oceani DSM 16646]
gi|302199290|gb|ADL06860.1| RNA-binding S4 domain protein [Thermosediminibacter oceani DSM
16646]
Length = 253
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 101/192 (52%), Gaps = 7/192 (3%)
Query: 80 EVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSV 139
+++ I +A + +R +FL P + + +GG+ +AER ++ V
Sbjct: 12 KIRDIFNIAIKNGEKR---AGNFLDPAEQQIAEAVARNFPGAGYYFEGGHSEAER-KVLV 67
Query: 140 GHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
PE L P + A+ + + SH D+LG++LG GI+R+K+GDII+ + GA
Sbjct: 68 AFPEYLEDQPFFLPIRAIRVIPKDPDEHPSHRDYLGAVLGLGISRDKVGDIIVT-KTGAD 126
Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
+V E+A+Y+ +L +VGNV VS I L + K K ASLR+DA+AS F
Sbjct: 127 IIVKEEVAEYIGLNLSRVGNVPVSVEEISLKEVATVERSYKEIKGTVASLRLDAIASLAF 186
Query: 258 KLSRSKLVNLIR 269
+SRSK+ I+
Sbjct: 187 GISRSKMAPYIK 198
>gi|33861912|ref|NP_893473.1| hypothetical protein PMM1356 [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33640280|emb|CAE19815.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 263
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 105/208 (50%), Gaps = 6/208 (2%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
DL + + + N +E++ ++ ++ + + + F + V +E + E L D K
Sbjct: 3 DLKELLINSNYKKEIEELINISNLSLKHWQTYWTGFNSTFVCEEILKEFENLNDFKFFVF 62
Query: 127 GGYPQAERCRLSVGHPEALTSDPDIVA-----ALSITGNFGFQPCSHGDFLGSILGTGIA 181
GGY A+R +++ + +++ + GNF F + DF ++ G+
Sbjct: 63 GGYNSAQRSKIACFREDNTPEKNELIKDFPAKGFQMNGNFLFDNATQDDFRSLLVDNGLR 122
Query: 182 REKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKS-F 240
E+IGDI G++GAQ ++ ++L + + +V V + L L+ R+K
Sbjct: 123 EERIGDIWTIGDRGAQGIIDDSKIEFLDEKIFSLRDVKVKIKIVSLDELQIPAGRSKKII 182
Query: 241 KTIEASLRVDALASAGFKLSRSKLVNLI 268
T+EAS R+DA+ASAGF++SR+K++ I
Sbjct: 183 NTVEASTRIDAIASAGFRISRNKILERI 210
>gi|406026563|ref|YP_006725395.1| 30S ribosomal protein S4e [Lactobacillus buchneri CD034]
gi|405125052|gb|AFR99812.1| ribosomal protein S4e [Lactobacillus buchneri CD034]
Length = 263
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 90/183 (49%), Gaps = 5/183 (2%)
Query: 88 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT- 146
R A+ R +L +DFL P L + + V GGYP AE R +V P+
Sbjct: 26 GRVANEYRPIL-TDFLNPRQLYILETIVNRYEGVSFQTFGGYPSAELKR-AVAFPDYFVP 83
Query: 147 -SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELA 205
+D + A I F SHG LGSI+G+GI R+ IGDI+ G QF+ E+A
Sbjct: 84 KADDYNITAFQIDYPSKFATLSHGQILGSIMGSGIDRDVIGDIVTDG-LNWQFMCESEMA 142
Query: 206 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 265
DY+ + ++++G + + +I + + T ASLRVDAL S GF +SR
Sbjct: 143 DYVQSQVDRIGKIKIKLKQIQPEEIIVPVDEGEELTTTVASLRVDALVSEGFHISRHHAK 202
Query: 266 NLI 268
LI
Sbjct: 203 ELI 205
>gi|284048331|ref|YP_003398670.1| RNA-binding S4 domain-containing protein [Acidaminococcus
fermentans DSM 20731]
gi|283952552|gb|ADB47355.1| RNA-binding S4 domain protein [Acidaminococcus fermentans DSM
20731]
Length = 265
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 97/188 (51%), Gaps = 3/188 (1%)
Query: 83 HILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHP 142
+L++A+ A R S FL P + + V+ GG+ AER +++
Sbjct: 26 QLLDLAKGARKSRRARVSGFLDPHGQNVAEIVAANYPQVRYEMNGGFQNAERQKVAF-IA 84
Query: 143 EALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVV 201
E PD + AL I + + H D LG+ +G G RE +GDI+ E GAQ V
Sbjct: 85 EDFYGQPDFAITALEILWDKRYYDIGHRDVLGAFMGLGCKREILGDIVFIDE-GAQLAVD 143
Query: 202 PELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSR 261
+ D+++++L K+G +V IPL L+ + + K A+LR+DA+A++G+ +SR
Sbjct: 144 TPMVDFILSNLTKIGAATVEVKVIPLEDLKEKEQKIKLISATVAALRLDAVAASGYGVSR 203
Query: 262 SKLVNLIR 269
S++ + I+
Sbjct: 204 SRMADEIK 211
>gi|333897310|ref|YP_004471184.1| RNA-binding S4 domain-containing protein [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333112575|gb|AEF17512.1| RNA-binding S4 domain protein [Thermoanaerobacterium xylanolyticum
LX-11]
Length = 247
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 104/193 (53%), Gaps = 18/193 (9%)
Query: 86 EMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL 145
+M R +DFL+ K + ++K D+ GG+ +AER +++ +P L
Sbjct: 10 DMINWVQKNRRDRFTDFLSMKDQKILLKLIDKHDDIDCRFDGGFKEAER-KIACIYPSFL 68
Query: 146 T-SDP---DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVV 201
SD D + + I G+ SH D LGS+LG GI REKIGDII + E +V
Sbjct: 69 AISDGEHFDAIKGIRINGDL--IRLSHRDVLGSLLGLGIKREKIGDIIKRQEI-CDVIVH 125
Query: 202 PELADYLITSLEKVGNVSVSCTRIPLL-----ALEYEPPRTKSFKTIEASLRVDALASAG 256
++AD+++ +L+K+G V + I L +EYE KT AS+R+D++ +AG
Sbjct: 126 RDIADFVLMNLKKIGREKVIVSSIDLDEVIEPVIEYE-----DIKTTVASVRLDSIIAAG 180
Query: 257 FKLSRSKLVNLIR 269
FK+SR+K +LI+
Sbjct: 181 FKISRTKASDLIK 193
>gi|331701066|ref|YP_004398025.1| RNA-binding S4 domain-containing protein [Lactobacillus buchneri
NRRL B-30929]
gi|329128409|gb|AEB72962.1| RNA-binding S4 domain protein [Lactobacillus buchneri NRRL B-30929]
Length = 263
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 90/183 (49%), Gaps = 5/183 (2%)
Query: 88 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT- 146
R A+ R +L +DFL P L + + V GGYP AE R +V P+
Sbjct: 26 GRVANEYRPIL-TDFLNPRQLYILETIVNRYEGVSFQTFGGYPSAELKR-AVAFPDYFVP 83
Query: 147 -SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELA 205
+D + A I F SHG LGSI+G+GI R+ IGDI+ G QF+ E+A
Sbjct: 84 KADDYNITAFQIDYPSKFATLSHGQILGSIMGSGIDRDVIGDIVTDG-LNWQFMCESEMA 142
Query: 206 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 265
DY+ + ++++G + + +I + + T ASLRVDAL S GF +SR
Sbjct: 143 DYVQSQVDRIGKIKIKLKQIQPEEIIAPVDEGEELTTTVASLRVDALVSEGFHISRHHAK 202
Query: 266 NLI 268
LI
Sbjct: 203 ELI 205
>gi|379723208|ref|YP_005315339.1| RNA-binding S4 domain-containing protein [Paenibacillus
mucilaginosus 3016]
gi|386725930|ref|YP_006192256.1| RNA-binding S4 domain-containing protein [Paenibacillus
mucilaginosus K02]
gi|378571880|gb|AFC32190.1| RNA-binding S4 domain-containing protein [Paenibacillus
mucilaginosus 3016]
gi|384093055|gb|AFH64491.1| RNA-binding S4 domain-containing protein [Paenibacillus
mucilaginosus K02]
Length = 260
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 93/169 (55%), Gaps = 5/169 (2%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE--ALTSDPDIVAALSI 157
+DFL P + + DV+ + GG+P AER R V P+ L S+ + LSI
Sbjct: 36 TDFLDPRQAFILTTLVNRSMDVQLLLNGGHPSAERRRAWVA-PDYRVLESEDPGITLLSI 94
Query: 158 TG-NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
T + + HGD++G+IL GI REK+GDI ++ + G LV E+ADY +L +V
Sbjct: 95 TSPDEKLEDLDHGDYMGAILSLGIKREKVGDIHVRPD-GCHILVASEIADYFRLNLSQVH 153
Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 265
V V +PL L++ + + + ASLR+D + S ++LSR+K++
Sbjct: 154 RVHVMTEVLPLERLQFTEVKLEELQLSVASLRLDGIVSDVYRLSRAKVL 202
>gi|337748291|ref|YP_004642453.1| RNA-binding S4 domain-containing protein [Paenibacillus
mucilaginosus KNP414]
gi|336299480|gb|AEI42583.1| RNA-binding S4 domain protein [Paenibacillus mucilaginosus KNP414]
Length = 260
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 93/169 (55%), Gaps = 5/169 (2%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE--ALTSDPDIVAALSI 157
+DFL P + + DV+ + GG+P AER R V P+ L S+ + LSI
Sbjct: 36 TDFLDPRQAFILTTLVNRSMDVQLLLNGGHPSAERRRAWVA-PDYRVLESEDPGITLLSI 94
Query: 158 TG-NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
T + + HGD++G+IL GI REK+GDI ++ + G LV E+ADY +L +V
Sbjct: 95 TSPDEKLEDLDHGDYMGAILSLGIKREKVGDIHVRPD-GCHILVASEIADYFRLNLSQVH 153
Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 265
V V +PL L++ + + + ASLR+D + S ++LSR+K++
Sbjct: 154 RVHVMTEVLPLERLQFTEVKFEELQLSVASLRLDGIVSDVYRLSRAKVL 202
>gi|123969089|ref|YP_001009947.1| S4-like domain-containing protein [Prochlorococcus marinus str.
AS9601]
gi|123199199|gb|ABM70840.1| Uncharacterized conserved protein, contains S4-like
domain-containing protein [Prochlorococcus marinus str.
AS9601]
Length = 263
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 108/215 (50%), Gaps = 10/215 (4%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
DL + + + N +E + ++ +A A E + F + V +E + E L D K
Sbjct: 3 DLKEILINANYKKETEELINIANLAYKHWETYWTGFNSTYVCEEILKDFENLNDFKFFIY 62
Query: 127 GGYPQAERCRL------SVGHPEALTSD-PDIVAALSITGNFGFQPCSHGDFLGSILGTG 179
GG+ ++R R+ ++ +AL S+ P + I GNF F + DF ++ G
Sbjct: 63 GGFSSSQRSRIACFRGDNIPEEDALKSNFP--AQGIKINGNFLFDNATQDDFRSLLIENG 120
Query: 180 IAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKS 239
+ + K+GDI G++GAQ ++ +L + + +V V + + L+ R+K
Sbjct: 121 VNQIKVGDIWTIGDRGAQGIIDNSNIKHLDEKIFYLRDVKVKVNVVGIDELQIPSGRSKK 180
Query: 240 F-KTIEASLRVDALASAGFKLSRSKLVNLIRYSSL 273
T+EAS R+DA+ASAGF++SR+K++ I L
Sbjct: 181 LVNTVEASTRLDAIASAGFRVSRTKIIERIENGML 215
>gi|126696880|ref|YP_001091766.1| S4-like domain-containing protein [Prochlorococcus marinus str. MIT
9301]
gi|126543923|gb|ABO18165.1| Uncharacterized conserved protein, contains S4-like
domain-containing protein [Prochlorococcus marinus str.
MIT 9301]
Length = 263
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 109/215 (50%), Gaps = 10/215 (4%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
DL + + + N +E + ++ +A A E + F + V +E + E L D K
Sbjct: 3 DLKEILINSNYKKETEELINIANLAYKHWETYWTGFNSTYVCEEILKDFENLNDFKFFIY 62
Query: 127 GGYPQAERCRL------SVGHPEALTSD-PDIVAALSITGNFGFQPCSHGDFLGSILGTG 179
GG+ ++R R+ ++ +AL S+ P + I GNF F + DF ++ G
Sbjct: 63 GGFSSSQRSRIACFRGDNIPEEDALKSNFP--AQGIKINGNFLFDNATQDDFRSLLIKNG 120
Query: 180 IAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKS 239
+ + K+GDI G++GAQ ++ ++L + + +V V + + L+ R+K
Sbjct: 121 VNQLKVGDIWTIGDRGAQGIIDNLDIEHLDEKIFYLRDVKVKINVVGIDELQIPSGRSKK 180
Query: 240 F-KTIEASLRVDALASAGFKLSRSKLVNLIRYSSL 273
T+EAS R+DA+ASAGF++SR+K++ I L
Sbjct: 181 LVNTVEASTRLDAIASAGFRVSRTKIIERIENGML 215
>gi|329922640|ref|ZP_08278192.1| S4 domain protein [Paenibacillus sp. HGF5]
gi|328941982|gb|EGG38265.1| S4 domain protein [Paenibacillus sp. HGF5]
Length = 261
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 103/196 (52%), Gaps = 9/196 (4%)
Query: 75 KNAIEEVKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQA 132
K+ E V E A E +DFL P + ES+ + + DV AV GG+ A
Sbjct: 12 KDEREFVDRAWEWVVNAGQYHETKLTDFLDPRQRFILESL--VNRHPDVHAVFDGGHADA 69
Query: 133 ERCRLSVGHPE--ALTSDPDIVAALSIT-GNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
ER R + P+ AL + ++ LSI+ G+ F HGD++GSILG GI R KIGDI
Sbjct: 70 ERVRAMIA-PDYRALEGEDLMMKVLSISSGDQKFLELEHGDYMGSILGLGIKRSKIGDIH 128
Query: 190 LQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRV 249
+ + G +V +++ +L +L +V V V +PL L+ ++ +S+R+
Sbjct: 129 VLAD-GCHAVVADDISAFLHLNLSQVHRVHVMTDLLPLDKLQVARTNFEAMDITVSSMRL 187
Query: 250 DALASAGFKLSRSKLV 265
D +AS +++SR+K+V
Sbjct: 188 DGIASDAYRISRTKIV 203
>gi|299144086|ref|ZP_07037166.1| putative YlmH protein [Peptoniphilus sp. oral taxon 386 str. F0131]
gi|298518571|gb|EFI42310.1| putative YlmH protein [Peptoniphilus sp. oral taxon 386 str. F0131]
Length = 257
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 93/196 (47%), Gaps = 9/196 (4%)
Query: 74 DKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAE 133
D++ + E++ +++ +++R + +DFL P K + L K D+ GGY +E
Sbjct: 15 DEDKLFEIRKVIDKIEISANRHSIQSTDFLDPYERKIVISILNKFDDISYSIDGGYSNSE 74
Query: 134 RCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGE 193
R + + D D V LS NF F +H D LGSIL GI R K+GDI+
Sbjct: 75 RAVIYIFPNYMYDIDFDDVEVLSFKNNFEF---THKDVLGSILSLGIDRRKVGDIVFNSN 131
Query: 194 KGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT-KSFKTIEASLRVDAL 252
V E+ YL +L KV ++ + + EP T + I +SLR+D
Sbjct: 132 Y-CHIFVKSEIFKYLRFNLGKVKRNNIKFEKAEFI----EPTLTYDEYTFIISSLRLDTF 186
Query: 253 ASAGFKLSRSKLVNLI 268
S+ KLSR+ NLI
Sbjct: 187 LSSVLKLSRTAASNLI 202
>gi|148242945|ref|YP_001228102.1| hypothetical protein SynRCC307_1846 [Synechococcus sp. RCC307]
gi|147851255|emb|CAK28749.1| Conserved hypothetical protein, contains S4-like domain
[Synechococcus sp. RCC307]
Length = 261
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 105/206 (50%), Gaps = 6/206 (2%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
DLL+G D A+E + E+ R + S FLT P +E+ L ++ +
Sbjct: 6 DLLEGARDPQALEALIQQAEVVLRTY---QPSWSAFLTGPQREEAEERFAPLGELHLRSA 62
Query: 127 GGYPQAERCRLSVGHPE--ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIARE 183
GG+PQAER L + + A +P +A + ++GNF F P +++ I
Sbjct: 63 GGFPQAERRLLQISRSDQAADAGEPAPLALVEVSGNFLFDPAEPTAIRAALIDQHSIDPL 122
Query: 184 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTI 243
+GD++++G++GA +V +A+ L +V +V L + +KS ++
Sbjct: 123 HLGDVLVRGDRGALVIVTSAMAERLQEQSLQVRSVDCQLQAGDWSRLPSQASSSKSLTSV 182
Query: 244 EASLRVDALASAGFKLSRSKLVNLIR 269
EASLR+DA+ASAGF +SRSK+ IR
Sbjct: 183 EASLRLDAIASAGFGVSRSKMATWIR 208
>gi|383753717|ref|YP_005432620.1| hypothetical protein SELR_08890 [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381365769|dbj|BAL82597.1| hypothetical protein SELR_08890 [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 264
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 2/165 (1%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE-ALTSDPDIVAALSIT 158
S FL P + + +++ GGY AER R H + A T + +
Sbjct: 41 SGFLDPFGQEIAETVAANYGNIRVDFAGGYQGAERARAIFIHEDFAGTPTSFGIDCIEAK 100
Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 218
N F SH D LG+++G GI R+ IGD+++ + + + ++AD+L+ +L+K+G V
Sbjct: 101 WNGQFARLSHRDVLGALMGQGIERDTIGDLLVTNDS-VKIICEEKMADFLLANLDKIGAV 159
Query: 219 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 263
V C R L ++ + R K + ASLRVD++A+AGF SRSK
Sbjct: 160 GVECQRADLSSIAPKEERCKEIRATVASLRVDSIAAAGFGSSRSK 204
>gi|390935121|ref|YP_006392626.1| RNA-binding S4 domain-containing protein [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389570622|gb|AFK87027.1| RNA-binding S4 domain protein [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 247
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 98/179 (54%), Gaps = 18/179 (10%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL----TSDPDIVAAL 155
+DFL+ K + + K D+ GG+ +AER +++ +P L +++ +
Sbjct: 24 TDFLSMKDQKILLKLIAKHDDIDCRFDGGFKEAER-KIACIYPSLLPIYDGEHFNVIKGI 82
Query: 156 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 215
I G+ SH D LGS+LG GI REKIGDII + E +V ++ADY++ +L+KV
Sbjct: 83 RINGDL--TKLSHRDVLGSLLGLGIKREKIGDIIKRQEI-CDVIVHNDIADYVLMNLKKV 139
Query: 216 GNVSVSCTRIPLL-----ALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIR 269
G V + I L +EYE KT AS+R+D++ ++GFK+SR+K +I+
Sbjct: 140 GREKVIVSSIDLDEVIEPVIEYE-----DIKTTVASIRLDSIVASGFKISRTKASEMIK 193
>gi|253576145|ref|ZP_04853477.1| RNA-binding S4 domain-containing protein [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251844488|gb|EES72504.1| RNA-binding S4 domain-containing protein [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 261
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 97/192 (50%), Gaps = 13/192 (6%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA----DVKAVAQGGYPQAERCR 136
V E A EV SDFL P LE LA D + GGY AER R
Sbjct: 18 VDRAWEWVVNAGDYHEVKLSDFLDP----RQCYILETLANRHPDTQIRLDGGYEGAERRR 73
Query: 137 LSVGHPE--ALTSDPDIVAALSIT-GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGE 193
+ P+ L+ +P + L IT G+ F HGD+LG+ILG G+ R+KIGDI ++ E
Sbjct: 74 ALIA-PDYRDLSQEPMGLKVLDITSGDQKFLALQHGDYLGAILGLGLKRDKIGDIHVR-E 131
Query: 194 KGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALA 253
G +V E+A +L +L +V V+V + L L + + ASLR+D +A
Sbjct: 132 DGCHVIVAEEIAPFLQMNLHQVHRVNVMTDVLNLSELRTMEKELEPMELTVASLRLDGIA 191
Query: 254 SAGFKLSRSKLV 265
S F+LSR+K++
Sbjct: 192 SDVFRLSRNKVL 203
>gi|430750503|ref|YP_007213411.1| hypothetical protein Theco_2302 [Thermobacillus composti KWC4]
gi|430734468|gb|AGA58413.1| hypothetical protein Theco_2302 [Thermobacillus composti KWC4]
Length = 260
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 97/195 (49%), Gaps = 11/195 (5%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA----DVKAVAQGGYPQAERCR 136
V LE RA+ R + +DFL P L+ +A D GGYP+AER R
Sbjct: 17 VDRALEWVERAAERHAPVVTDFLDP----RQQFILQSIAGREPDAVLRLDGGYPEAERKR 72
Query: 137 LSVGHPEALTSDPDI-VAALSITGNFG-FQPCSHGDFLGSILGTGIAREKIGDIILQGEK 194
+ D D + L++ + G F HGD+LG++LG GI R+ IGD+ ++ +
Sbjct: 73 AVIVPAYRDPEDVDCGIVVLAVEASGGKFLELDHGDYLGALLGLGIKRDVIGDLHVR-DD 131
Query: 195 GAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALAS 254
G LV E+A +L T L +V V V +P +L P ASLR+D +AS
Sbjct: 132 GCHCLVTEEMAGFLHTHLNQVHRVPVRTDILPRESLRVVQPEMDVTVITVASLRLDGVAS 191
Query: 255 AGFKLSRSKLVNLIR 269
++SRSK+++ IR
Sbjct: 192 DVLRISRSKILDPIR 206
>gi|354582307|ref|ZP_09001209.1| RNA-binding S4 domain protein [Paenibacillus lactis 154]
gi|353199706|gb|EHB65168.1| RNA-binding S4 domain protein [Paenibacillus lactis 154]
Length = 260
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 95/194 (48%), Gaps = 13/194 (6%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA----DVKAVAQGGYPQAER 134
E V E A EV +DFL P LE L DV A +GGY AER
Sbjct: 15 EFVDRAWEWVANAGQYHEVKLTDFLDP----RQRFILETLVNRHPDVHAAFEGGYADAER 70
Query: 135 CRLSVGHPE--ALTSDPDIVAALSIT-GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ 191
R + P+ L + + LSIT G+ HGD++GSILG GI R KIGDI +
Sbjct: 71 VRAIIA-PDYRELDGEDFKIKVLSITSGDQKLLELEHGDYMGSILGLGIKRSKIGDIHVI 129
Query: 192 GEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDA 251
E G +V E+ +L +L +V V V +P+ L+ + ++ +SLR+D
Sbjct: 130 -ESGCHAVVSEEIGSFLNLNLSQVHRVHVMTELLPMDKLQAAETKLETMDITVSSLRLDG 188
Query: 252 LASAGFKLSRSKLV 265
+AS ++SR+K+V
Sbjct: 189 IASDAHRISRTKIV 202
>gi|315646047|ref|ZP_07899168.1| RNA-binding S4 domain protein [Paenibacillus vortex V453]
gi|315278808|gb|EFU42122.1| RNA-binding S4 domain protein [Paenibacillus vortex V453]
Length = 260
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 99/195 (50%), Gaps = 7/195 (3%)
Query: 75 KNAIEEVKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQA 132
++ E V E A E +DFL P + ES+ + + DV A+ QGG+ A
Sbjct: 11 RDEREFVDRAWEWVVNAGQYHEAKLTDFLDPRQRFILESL--VNRHPDVHALFQGGHADA 68
Query: 133 ERCRLSVGHPEALTSDPDI-VAALSIT-GNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
ER R + D+ + LSI+ G+ F HGD++GSILG GI R KIGDI +
Sbjct: 69 ERVRALIAPDYRDLEGEDLKMKVLSISSGDQKFLELDHGDYMGSILGLGIKRSKIGDIHV 128
Query: 191 QGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVD 250
E G +V +++ +L +L +V V V +PL L+ + +S+R+D
Sbjct: 129 L-EDGCHTVVAEDISSFLHLNLSQVHRVHVMTELLPLDKLQVTHTNFDTMDITASSMRLD 187
Query: 251 ALASAGFKLSRSKLV 265
+AS +++SR+K+V
Sbjct: 188 GIASDAYRISRTKIV 202
>gi|260887802|ref|ZP_05899065.1| S4 domain protein [Selenomonas sputigena ATCC 35185]
gi|330838698|ref|YP_004413278.1| RNA-binding S4 domain protein [Selenomonas sputigena ATCC 35185]
gi|260862478|gb|EEX76978.1| S4 domain protein [Selenomonas sputigena ATCC 35185]
gi|329746462|gb|AEB99818.1| RNA-binding S4 domain protein [Selenomonas sputigena ATCC 35185]
Length = 261
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 75/138 (54%), Gaps = 1/138 (0%)
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
GGY AER R H + + +A + F SH D LG+I+G G+ RE I
Sbjct: 65 NGGYAGAERQRAVFQHEDFRGTPSWEIAVVEAVWKDAFAHISHRDVLGAIMGLGVEREII 124
Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
GDI +Q + A+ + V +AD+L+T+ + G V+C+ L AL R K + A
Sbjct: 125 GDIQIQ-QGAARIVTVENMADFLLTNCVQFGAAHVTCSLGELSALLPREERCKEIRATVA 183
Query: 246 SLRVDALASAGFKLSRSK 263
SLR D++A+AGF +SRS+
Sbjct: 184 SLRADSIAAAGFGMSRSR 201
>gi|222529338|ref|YP_002573220.1| RNA-binding S4 domain-containing protein [Caldicellulosiruptor
bescii DSM 6725]
gi|222456185|gb|ACM60447.1| RNA-binding S4 domain protein [Caldicellulosiruptor bescii DSM
6725]
Length = 260
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 105/194 (54%), Gaps = 6/194 (3%)
Query: 99 HSDFLTPPVLKESMMALEKLAD-VKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSI 157
+SDFL+P +K ++ L K + + + GGY +ER L++ + + ++ + I
Sbjct: 33 YSDFLSPFAIKYAVEVLLKNQNHILHRSWGGYEGSERNILALFNRDFEEYTENLTYPIQI 92
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
SH LGS +G G+ R+KIGDI+++ E GA V E+A Y++T+++K+GN
Sbjct: 93 ILIEAKNNLSHRQILGSFIGNGLKRDKIGDILVK-ENGALVFVKDEIATYVVTNIDKMGN 151
Query: 218 VSVSCTRIPLLALE---YEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSLA 274
V C+ + ++ + +K ASLRVD++ S GF +SR + +LIR +A
Sbjct: 152 EKVKCSIVGNGQIDIKWFINNNSKRVVYTVASLRVDSVISHGFGISREEAADLIRQMKVA 211
Query: 275 -SLVQISAKASAIR 287
+ V I + A++
Sbjct: 212 VNWVYIDKPSYAVK 225
>gi|310642972|ref|YP_003947730.1| RNA-binding s4 domain-containing protein [Paenibacillus polymyxa
SC2]
gi|309247922|gb|ADO57489.1| RNA-binding S4 domain-containing protein [Paenibacillus polymyxa
SC2]
gi|392303787|emb|CCI70150.1| putative RNA-binding protein ylmH [Paenibacillus polymyxa M1]
Length = 260
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 97/188 (51%), Gaps = 7/188 (3%)
Query: 86 EMARRASSRREVLHSDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
E A + E +DFL P + E++ + E ++ GGY +ER R +
Sbjct: 22 EWISHAGAYHEQKLTDFLDPRQQYILETLASKEDKVTIRV--DGGYTASERKRALIAPDY 79
Query: 144 ALTSDPDI-VAALSITGN-FGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVV 201
+ D ++ + LSI+ + HGD+LG+ILG GI R KIGDI + + G LV
Sbjct: 80 SYLDDEEMGIQVLSISSDDHKINTLEHGDYLGAILGLGIKRGKIGDIHVL-DDGCHVLVA 138
Query: 202 PELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSR 261
E+ D++ L++V V V +P+ +L + ++ ASLR+D +AS +KLSR
Sbjct: 139 SEIGDFITMHLQQVHRVHVWTELLPVASLRTKEVALEAMDLTVASLRLDGIASDVYKLSR 198
Query: 262 SKLVNLIR 269
SK++ IR
Sbjct: 199 SKILTPIR 206
>gi|312622416|ref|YP_004024029.1| RNA-binding S4 domain-containing protein [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202883|gb|ADQ46210.1| RNA-binding S4 domain protein [Caldicellulosiruptor kronotskyensis
2002]
Length = 255
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 104/194 (53%), Gaps = 6/194 (3%)
Query: 99 HSDFLTPPVLKESMMALEKLAD-VKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSI 157
+SDFL+P +K ++ L K + + + GGY +ER L++ + + ++ +
Sbjct: 28 YSDFLSPFAIKYAVEVLLKNQNHILHRSWGGYEDSERNILALFNRDFEEYTENLTYPIQT 87
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
SH LGS +G G+ R+KIGDI+++ E GA V E+A Y++T+++K+GN
Sbjct: 88 ILIEAKNNLSHRQILGSFIGNGLKRDKIGDILVK-ENGALVFVKDEIATYVVTNIDKIGN 146
Query: 218 VSVSCTRIPLLALE---YEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSLA 274
V C+ + ++ + +K ASLRVD++ S GF +SR + +LIR +A
Sbjct: 147 EKVKCSIVENGQIDIKWFINNNSKRVVYTVASLRVDSVISHGFGISREEAADLIRQMKVA 206
Query: 275 -SLVQISAKASAIR 287
+ V I + A++
Sbjct: 207 VNWVYIDKPSYAVK 220
>gi|390453149|ref|ZP_10238677.1| RNA-binding s4 domain-containing protein [Paenibacillus peoriae
KCTC 3763]
Length = 260
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 93/174 (53%), Gaps = 7/174 (4%)
Query: 100 SDFLTPPVLK--ESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALS 156
+DFL P L E++ + E ++ GGY +ER R + + D D+ + LS
Sbjct: 36 TDFLDPRQLYILETLSSKEDKVTIRL--DGGYEASERKRALIAPDYSYLDDEDMGIRVLS 93
Query: 157 ITGNF-GFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 215
I+ + HGD+LG+ILG GI R KIGDI + + G LV E++D++ L++V
Sbjct: 94 ISSDDQKIGTLEHGDYLGAILGLGIKRGKIGDIHVL-DDGCHVLVASEISDFITLHLQQV 152
Query: 216 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIR 269
V V +PL +L + + ASLR+D +AS +KLSRSK++ IR
Sbjct: 153 HRVHVWTELLPLESLRTKEAELEPLDLTVASLRLDGIASDVYKLSRSKILTPIR 206
>gi|375309381|ref|ZP_09774662.1| RNA-binding s4 domain-containing protein [Paenibacillus sp.
Aloe-11]
gi|375078690|gb|EHS56917.1| RNA-binding s4 domain-containing protein [Paenibacillus sp.
Aloe-11]
Length = 260
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 93/174 (53%), Gaps = 7/174 (4%)
Query: 100 SDFLTPPVLK--ESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALS 156
+DFL P L E++ + E ++ GGY +ER R + + D D+ + LS
Sbjct: 36 TDFLDPRQLYILETLSSKEDKVTIRL--DGGYEASERKRALIAPDYSYLDDEDMGIRVLS 93
Query: 157 ITGN-FGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 215
I+ + HGD+LG+ILG GI R KIGDI + + G LV E++D+++ L++V
Sbjct: 94 ISSDDHKISTLEHGDYLGAILGLGIKRGKIGDIHVL-DDGCHVLVASEISDFIMLHLQQV 152
Query: 216 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIR 269
V V +P +L + + ASLR+D +AS +KLSRSK++ IR
Sbjct: 153 HRVHVWTELLPSESLRTKEAELEPLDLTVASLRLDGIASDVYKLSRSKILTPIR 206
>gi|433654813|ref|YP_007298521.1| hypothetical protein Thethe_01171 [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433293002|gb|AGB18824.1| hypothetical protein Thethe_01171 [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 247
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 102/188 (54%), Gaps = 8/188 (4%)
Query: 86 EMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL 145
++A+ + ++DFL+ K + +++ D+ GG+ +AER +++ +P+
Sbjct: 10 DIAKWVQKNKRDRYTDFLSMREQKILLKLIKQFDDINCRFDGGFEKAER-KMAHIYPKFK 68
Query: 146 TSDPD----IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVV 201
+ + ++ A+ I+G+ SH D LGSILG GI R+K+GDII + E +V
Sbjct: 69 NVEDETHIVLLNAIRISGDLS--KLSHRDVLGSILGLGIKRDKVGDIIKRQE-NCDVIVH 125
Query: 202 PELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSR 261
++ Y++ +L K+G V+ I L + + T AS+R+D++ ++GFK+SR
Sbjct: 126 NDIVGYILMNLNKIGKERVNVNSIELDEVMEPEIKYDDINTTVASIRLDSIVASGFKISR 185
Query: 262 SKLVNLIR 269
+K +I+
Sbjct: 186 TKASEMIK 193
>gi|422343049|ref|ZP_16423977.1| hypothetical protein HMPREF9432_00037 [Selenomonas noxia F0398]
gi|355379005|gb|EHG26181.1| hypothetical protein HMPREF9432_00037 [Selenomonas noxia F0398]
Length = 264
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 98/197 (49%), Gaps = 6/197 (3%)
Query: 73 GDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQA 132
G++ AI +L++A R+ S FL P + + ++ GGY A
Sbjct: 18 GEETAI----RLLDLAESVIKTRKFRISPFLDPYGQEIAETICANYEGIQLDFDGGYAGA 73
Query: 133 ERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ 191
ER R + H + A T D + ++ N F SH D LG+++G GI RE IGDI L
Sbjct: 74 ERQRAMLRHADFAGTPDGFGIVCVAAAWNGQFARLSHRDVLGALMGLGIERESIGDI-LP 132
Query: 192 GEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDA 251
G A+ L +L+D+++ +L +G V T + RTK + ASLR+DA
Sbjct: 133 GADAAKILCDAKLSDFIVNNLTMIGAAGVKATVEDTAEIAPREERTKEIRATVASLRLDA 192
Query: 252 LASAGFKLSRSKLVNLI 268
+A+AGF +SRS+ + I
Sbjct: 193 VAAAGFGVSRSRAADDI 209
>gi|255659719|ref|ZP_05405128.1| S4 domain protein [Mitsuokella multacida DSM 20544]
gi|260848293|gb|EEX68300.1| S4 domain protein [Mitsuokella multacida DSM 20544]
Length = 264
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 78/138 (56%), Gaps = 2/138 (1%)
Query: 127 GGYPQAERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
GGY AER R H + A T +A L + N F SH D LG+++G GI R+++
Sbjct: 68 GGYQGAERARAMYIHEDFAGTPSGFDIACLKASWNGQFARLSHRDVLGALMGLGIERDRL 127
Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
GD+++ + + L ++A+YL+ +L K+G V VSC L + R K + A
Sbjct: 128 GDLLVTADS-VRILCDSKMAEYLLQNLTKIGAVGVSCEMADLAGIAPREERCKEIRATVA 186
Query: 246 SLRVDALASAGFKLSRSK 263
SLR+D++A++GF SRS+
Sbjct: 187 SLRIDSIAASGFGSSRSR 204
>gi|261405680|ref|YP_003241921.1| RNA-binding S4 domain-containing protein [Paenibacillus sp.
Y412MC10]
gi|261282143|gb|ACX64114.1| RNA-binding S4 domain protein [Paenibacillus sp. Y412MC10]
Length = 261
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 102/196 (52%), Gaps = 9/196 (4%)
Query: 75 KNAIEEVKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQA 132
K+ E V E A E +DFL P + ES+ + + DV A+ GG+ A
Sbjct: 12 KDEREFVDRAWEWVVNAGQYHETKLTDFLDPRQRFILESL--VNRHPDVHALFDGGHADA 69
Query: 133 ERCRLSVGHPE--ALTSDPDIVAALSIT-GNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
ER R + P+ AL + + LSI+ G+ F HGD++GSILG GI R KIGDI
Sbjct: 70 ERVRAMIA-PDYRALEGEDLKMKVLSISSGDQKFLELEHGDYMGSILGLGIKRSKIGDIH 128
Query: 190 LQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRV 249
+ + G +V +++ +L +L +V V V +PL L+ ++ +S+R+
Sbjct: 129 VLAD-GCHAVVADDISAFLHLNLSQVHRVHVMTDLLPLDKLQVARTNFEAMDITVSSMRL 187
Query: 250 DALASAGFKLSRSKLV 265
D +AS +++SR+K++
Sbjct: 188 DGIASDAYRISRTKII 203
>gi|402833534|ref|ZP_10882147.1| S4 domain protein [Selenomonas sp. CM52]
gi|402280027|gb|EJU28797.1| S4 domain protein [Selenomonas sp. CM52]
Length = 261
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 76/138 (55%), Gaps = 3/138 (2%)
Query: 127 GGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 186
GGY AER R H + + +A + F SH D LG+I+G G+ RE IG
Sbjct: 66 GGYAGAERQRAVFQHEDFRGTPSWEIAVVEAQWKDAFAHISHRDVLGAIMGLGVEREIIG 125
Query: 187 DIILQGEKGAQFLVVPE-LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
DI +Q +GA +V E +AD+L+T+ + G V+C+ L AL R K + A
Sbjct: 126 DIQIQ--QGAARIVTAENMADFLLTNCVQFGAAHVTCSLGELSALLPREERCKEIRATVA 183
Query: 246 SLRVDALASAGFKLSRSK 263
SLR D++A+AGF +SRS+
Sbjct: 184 SLRADSIAAAGFGMSRSR 201
>gi|123966750|ref|YP_001011831.1| S4-like domain-containing protein [Prochlorococcus marinus str. MIT
9515]
gi|123201116|gb|ABM72724.1| Uncharacterized conserved protein, contains S4-like domain
[Prochlorococcus marinus str. MIT 9515]
Length = 263
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 105/206 (50%), Gaps = 11/206 (5%)
Query: 75 KNAIEEVKHILEMA-RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAE 133
K IEE+ +I ++ + + +S F+ +LKE E L D K GGYP A+
Sbjct: 14 KKEIEELINISNLSLKHWVTYWTGFNSTFVCEEILKE----FENLNDFKFFVFGGYPSAQ 69
Query: 134 RCRLSVGHPEALTSDPDIVA-----ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDI 188
+ +++ + + + +++ + + GNF F + DF + G+ E+IGDI
Sbjct: 70 KSKIACFREDNVPDENELIKNFPAKGILMKGNFLFDNATQDDFRSLLRDNGLIEERIGDI 129
Query: 189 ILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT-KSFKTIEASL 247
G++GAQ ++ + L + + +V V + L +L+ R+ K T+EAS
Sbjct: 130 WTTGDRGAQGIIDDSKIEDLNEKVFFLRDVKVKIQIVDLDSLQIPVGRSQKLINTVEAST 189
Query: 248 RVDALASAGFKLSRSKLVNLIRYSSL 273
R+DA+ASAGF++SR+K++ I L
Sbjct: 190 RLDAIASAGFRISRTKILERIETGML 215
>gi|304437219|ref|ZP_07397179.1| ribosomal protein S4e [Selenomonas sp. oral taxon 149 str. 67H29BP]
gi|304369711|gb|EFM23376.1| ribosomal protein S4e [Selenomonas sp. oral taxon 149 str. 67H29BP]
Length = 264
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 103/214 (48%), Gaps = 8/214 (3%)
Query: 73 GDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQA 132
G++ A+ +L++A R+ S FL P + + D++ GGY A
Sbjct: 18 GEETAV----RLLDLAETVVKTRKFRISPFLDPYGQEIAETIRASYDDLQLDFDGGYQGA 73
Query: 133 ERCRLSVGHPE--ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
ER R + H + T D IV + T N F +H D LG+++G GI RE IGDI L
Sbjct: 74 ERARAMLRHRDFAGRTEDFGIVC-VEATWNGQFARLTHRDVLGAVMGLGIEREMIGDI-L 131
Query: 191 QGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVD 250
A+ L ++A +LI +L +G V V L + RTK + ASLR+D
Sbjct: 132 PASDAAKILCDAKIAPFLIENLTMIGAVGVKTVPAELTEIAPREERTKEIRATVASLRLD 191
Query: 251 ALASAGFKLSRSKLVNLIRYSSLASLVQISAKAS 284
++ +AGF +SRS+ + I + Q +A AS
Sbjct: 192 SIVAAGFGISRSRAADDITADKVKHNWQSAASAS 225
>gi|332653672|ref|ZP_08419416.1| S4 domain protein [Ruminococcaceae bacterium D16]
gi|332516758|gb|EGJ46363.1| S4 domain protein [Ruminococcaceae bacterium D16]
Length = 265
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 89/175 (50%), Gaps = 7/175 (4%)
Query: 99 HSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER--CRL--SVGHPEALTSDPD-IVA 153
H+ FL+P L + V GGYP AER C E +DP+ +A
Sbjct: 38 HTPFLSPGERASVTDLLSAWGHPRHVFFGGYPDAERTVCLFLPDWQEEEDAIADPEGPLA 97
Query: 154 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
AL T G + SH D LGS++G GI REK+GDI+++G + Q L + + L++ E
Sbjct: 98 ALEATFPNGAE-LSHRDILGSLMGLGITREKLGDILVEGNR-CQVLALRDALPILLSQWE 155
Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
G I L L +PP+ K+ + A+LR+DA+ ++GF SRSK L+
Sbjct: 156 SAGRWKAKLREISLSELTPKPPQVKTIRDTVAALRLDAVLASGFSTSRSKAAQLV 210
>gi|292669559|ref|ZP_06602985.1| S4 domain protein [Selenomonas noxia ATCC 43541]
gi|292648768|gb|EFF66740.1| S4 domain protein [Selenomonas noxia ATCC 43541]
Length = 264
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 98/197 (49%), Gaps = 6/197 (3%)
Query: 73 GDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQA 132
G++ AI +L++A R+ S FL P + + ++ GGY A
Sbjct: 18 GEETAI----RLLDLAESVIKTRKFRISPFLDPYGQEIAETICANYEGIQLDFDGGYAGA 73
Query: 133 ERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ 191
ER R + H + A T D + ++ N F SH D LG+++G GI RE IGDI L
Sbjct: 74 ERQRAMLRHADFAGTPDGFGIVCVAAAWNGQFARLSHRDVLGALMGLGIERESIGDI-LP 132
Query: 192 GEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDA 251
G A+ L +++D+++ +L +G V T + RTK + ASLR+DA
Sbjct: 133 GADAAKILCDAKISDFIVNNLTMIGAAGVKATVEDTAEIAPREERTKEIRATVASLRLDA 192
Query: 252 LASAGFKLSRSKLVNLI 268
+A+AGF +SRS+ + I
Sbjct: 193 VAAAGFGVSRSRAADDI 209
>gi|365839024|ref|ZP_09380275.1| S4 domain protein [Anaeroglobus geminatus F0357]
gi|364565826|gb|EHM43537.1| S4 domain protein [Anaeroglobus geminatus F0357]
Length = 261
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 97/190 (51%), Gaps = 7/190 (3%)
Query: 83 HILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHP 142
++++A R S+F++P ++ A + GGY AER +L
Sbjct: 22 RLIDLADSTDKGRPYAVSEFVSPGAVQIGETVSAHAATLVLRVNGGYEGAERVKLCFIRN 81
Query: 143 EALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVP 202
+ S + A IT + ++ H D LG+++ GI R + GDII+ E GA LV
Sbjct: 82 DYEGSVDFGLTACRITWDARYRLLGHRDVLGALMSLGIDRGRFGDIIMH-EDGAVILVDT 140
Query: 203 ELADYLITSLEKVGNVSVSCTRIPLLALEYEPPR---TKSFKTIEASLRVDALASAGFKL 259
+L YL +L K+ VSV+ + +P+ ++ PPR K KT ASLR+DA+ S+GF +
Sbjct: 141 KLLPYLQQNLGKIAMVSVTISEVPVASI---PPRREKIKEIKTTVASLRLDAVVSSGFGI 197
Query: 260 SRSKLVNLIR 269
SR+K I+
Sbjct: 198 SRTKAAEAIK 207
>gi|348025437|ref|YP_004765241.1| S4 domain protein [Megasphaera elsdenii DSM 20460]
gi|341821490|emb|CCC72414.1| S4 domain protein [Megasphaera elsdenii DSM 20460]
Length = 261
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 106/211 (50%), Gaps = 11/211 (5%)
Query: 64 NFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKA 123
N D +++ + E ++++A + R S+F++P ++ + +
Sbjct: 3 NRDRIIRYYQGTDNGELAARLIDLADSTAKGRPYAVSEFVSPGAVQIGETIQAHVPSLVL 62
Query: 124 VAQGGYPQAERCRLSVGHPEALTSDPDI-----VAALSITGNFGFQPCSHGDFLGSILGT 178
GGY AER +L+ +++D D + A ++ + ++ H D LGS++
Sbjct: 63 RTFGGYEGAERVKLAF-----VSADYDGPVDFGITACRLSWDDRYRLLGHRDVLGSLMSL 117
Query: 179 GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK 238
G+ RE+ GDII+Q E GA L +L YL + K+ VS++ +PL + + K
Sbjct: 118 GVGRERFGDIIMQ-EAGAILLADTKLVPYLQQNFTKIAMVSIAIEEMPLEDIAPRQEKVK 176
Query: 239 SFKTIEASLRVDALASAGFKLSRSKLVNLIR 269
KT ASLR+DA+AS+GF +SR+K I+
Sbjct: 177 EIKTTVASLRLDAIASSGFGISRTKAAEAIK 207
>gi|304316676|ref|YP_003851821.1| RNA-binding S4 domain-containing protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778178|gb|ADL68737.1| RNA-binding S4 domain protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 246
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 101/187 (54%), Gaps = 7/187 (3%)
Query: 86 EMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE-- 143
++A+ + ++DFL+ K + + + D+ GG+ AER +++ +P+
Sbjct: 10 DIAKWVQKNKRDRYTDFLSLRDQKILLKLMTQFDDINCGFIGGFDAAER-KIAHIYPKFR 68
Query: 144 -ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVP 202
A+ + ++A+ I G+ SH D LGSILG GI R+K+GDII + E +V
Sbjct: 69 NAVDAYKAPISAIRINGDL--SKLSHRDVLGSILGLGIKRDKVGDIIKRQE-SCDIVVHN 125
Query: 203 ELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRS 262
++A Y++ +L K+G V+ I L + + T AS+R+D++ ++GFKLSR+
Sbjct: 126 DIASYILINLHKIGKERVNVYSINLDEIMEPEVKYDDINTTVASIRLDSIIASGFKLSRT 185
Query: 263 KLVNLIR 269
K LI+
Sbjct: 186 KASELIK 192
>gi|258646841|ref|ZP_05734310.1| S4 domain protein [Dialister invisus DSM 15470]
gi|260404278|gb|EEW97825.1| S4 domain protein [Dialister invisus DSM 15470]
Length = 263
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 88/169 (52%), Gaps = 5/169 (2%)
Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNF 161
F++P + + V GGY +AER R++ + + AL +T +
Sbjct: 43 FMSPFAAQVGQTIAAHMKTVAVKTSGGYHEAERIRVAFARNDYDGLVDFGLTALKVTWDD 102
Query: 162 GFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVS 221
++ H D LG+++G GI R +GDI++QG G Q + +A+++ + KV VSV
Sbjct: 103 RYRLIGHRDVLGALMGLGIDRAVLGDILMQG-AGCQIVADSSMAEWIKRNFLKVAMVSVQ 161
Query: 222 CTRIPLLALEYEPPR--TKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
I L E EPP+ + + ASLR+DA+ +AGF +SRSK+V +
Sbjct: 162 IKEISLE--ELEPPKKTAREVRATVASLRLDAVGAAGFGISRSKMVQCV 208
>gi|157413918|ref|YP_001484784.1| RNA-binding S4 [Prochlorococcus marinus str. MIT 9215]
gi|157388493|gb|ABV51198.1| RNA-binding S4 [Prochlorococcus marinus str. MIT 9215]
Length = 263
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 105/213 (49%), Gaps = 9/213 (4%)
Query: 69 LKGV-GDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQG 127
LKG+ + N +E + ++ +A A E + F + V +E + E L D K G
Sbjct: 4 LKGILINSNYKKETEELINIANLAYKHWETYWTGFNSTYVCEEILKDFENLNDFKFFIHG 63
Query: 128 GYPQAERCRLSVGHPEALTSDPDIVA------ALSITGNFGFQPCSHGDFLGSILGTGIA 181
G+ ++R +++ + + + D++ + GNF F + DF ++ G+
Sbjct: 64 GFSSSQRSKIACFRGDNI-PEEDVLKNNFPAQGIKFYGNFLFDNATQDDFRSLLIENGVN 122
Query: 182 REKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSF- 240
+ K+GDI G++GAQ ++ ++L + + +V V + + L RTK
Sbjct: 123 KVKVGDIWTIGDRGAQGIIDNLDIEHLDEKIFYLRDVEVKINLVGIDELLIPAGRTKKLV 182
Query: 241 KTIEASLRVDALASAGFKLSRSKLVNLIRYSSL 273
T+EAS R+DA+ASAGF++SR K++ I L
Sbjct: 183 NTVEASTRLDAIASAGFRISRKKIIERIENGML 215
>gi|226313407|ref|YP_002773301.1| hypothetical protein BBR47_38200 [Brevibacillus brevis NBRC 100599]
gi|226096355|dbj|BAH44797.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 257
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 104/206 (50%), Gaps = 12/206 (5%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V+ LEM + ++ + +DF+ P L ++ DVK GGY AER R+ +
Sbjct: 15 VERALEMLTQVERKQAMRLTDFVDPRQLLIFQSLSSQVTDVKVSPYGGYEGAERVRIII- 73
Query: 141 HPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
HPE L +PD + L+I + F H D +G++LG G+ REK GD +L G+
Sbjct: 74 HPEYLPVEPDDYRLTLLAIKADQRFHVLEHRDVMGAMLGVGMKREKFGD-MLTDSAGSYA 132
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSF-KTIEA-SLRVDALASAG 256
+V E+AD++ + ++ SV R+ A + PP K KTI S R+DA+
Sbjct: 133 IVAEEVADFVCAQVTQIHRTSVQFERVAWEA--FTPPAPKFVEKTITVPSGRIDAIIGEV 190
Query: 257 FKLSRSKLVNLIRYSSLASLVQISAK 282
+SR+K + IR A V+I+ K
Sbjct: 191 HNMSRAKALVPIR----AGKVKINWK 212
>gi|290969124|ref|ZP_06560652.1| S4 domain protein [Megasphaera genomosp. type_1 str. 28L]
gi|335049281|ref|ZP_08542281.1| S4 domain protein [Megasphaera sp. UPII 199-6]
gi|290780844|gb|EFD93444.1| S4 domain protein [Megasphaera genomosp. type_1 str. 28L]
gi|333763554|gb|EGL40998.1| S4 domain protein [Megasphaera sp. UPII 199-6]
Length = 261
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 94/190 (49%), Gaps = 7/190 (3%)
Query: 83 HILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSV--- 139
++E+A R SDF++P ++ + DV GGY AER R++
Sbjct: 22 RLIELAEYVCKGRPYAVSDFVSPGAVQIGETICAQDTDVHLQCDGGYEGAERVRMAFVRN 81
Query: 140 GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFL 199
G+ A+ + A + + ++ +H D LGS++G G+ R K GDII+ E GA L
Sbjct: 82 GYEGAVDFS---IRACRLVWDSRYRLLTHRDVLGSLMGLGVERAKFGDIIM-AEDGAVLL 137
Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
+ + Y+ L+KV V+V L + + K KT ASLR+DA+ ++GF +
Sbjct: 138 LDANMESYVQQHLQKVSIVTVQIAPYDLKEIAPRQKKVKEIKTTVASLRLDAIVASGFGI 197
Query: 260 SRSKLVNLIR 269
SR+K I+
Sbjct: 198 SRTKAAAAIK 207
>gi|238855267|ref|ZP_04645586.1| cell division protein [Lactobacillus jensenii 269-3]
gi|260664626|ref|ZP_05865478.1| photosystem II S4 domain-containing protein [Lactobacillus jensenii
SJ-7A-US]
gi|313471915|ref|ZP_07812407.1| cell-division protein [Lactobacillus jensenii 1153]
gi|238832159|gb|EEQ24477.1| cell division protein [Lactobacillus jensenii 269-3]
gi|239529160|gb|EEQ68161.1| cell-division protein [Lactobacillus jensenii 1153]
gi|260561691|gb|EEX27663.1| photosystem II S4 domain-containing protein [Lactobacillus jensenii
SJ-7A-US]
Length = 274
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 101/202 (50%), Gaps = 7/202 (3%)
Query: 75 KNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQA 132
KN E++ + + +E + ++FL P + + L +LA Q GGY +A
Sbjct: 21 KNDNEDISQLSGYLMQICYGKEAVLTNFLDPG----ARVDLRELAQSDFYIQEFGGYDKA 76
Query: 133 ERCRLSVGHPEALTSDPDIVAAL-SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ 191
E+CR+ + + + +L IT N F +H LG++LG+G++ +GDII
Sbjct: 77 EKCRVIISNDWEYKDVENFQFSLIKITYNHKFASITHSQILGTLLGSGLSPASLGDIITD 136
Query: 192 GEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDA 251
G+ QF + + D++ + ++G V+V RIPL + ++ K + SLR+DA
Sbjct: 137 GKGNWQFFISDIMLDFVCREITRIGKVAVRLDRIPLKQILNIEDDVQNVKLVVNSLRIDA 196
Query: 252 LASAGFKLSRSKLVNLIRYSSL 273
+ +A + SR+ + N I ++
Sbjct: 197 ILAALTRTSRNIINNQIEKENI 218
>gi|375084577|ref|ZP_09731440.1| hypothetical protein HMPREF9454_00051 [Megamonas funiformis YIT
11815]
gi|374568025|gb|EHR39220.1| hypothetical protein HMPREF9454_00051 [Megamonas funiformis YIT
11815]
Length = 261
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 102/208 (49%), Gaps = 1/208 (0%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
E V +++ + R+ +DFL P + + + + GGY AER +
Sbjct: 18 EIVIKLIDAVEAVNKTRKFRATDFLDPYGCEIAETVVAHYDGISVDFFGGYIGAERQCAN 77
Query: 139 VGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
H + + ++ + T N F SH D LG+++G GI RE+IGD+++ +
Sbjct: 78 FVHEDFMGKPSYNISVVKATWNDKFYRLSHRDVLGALMGLGIKREQIGDLLIT-LGMVKI 136
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
+ ++AD+++ +L ++G+ VSC L + R K + ASLR+D++A++GF
Sbjct: 137 ICTTKMADFILQNLTQIGSAKVSCELDNLETIAPREERCKEITSTVASLRIDSIAASGFG 196
Query: 259 LSRSKLVNLIRYSSLASLVQISAKASAI 286
SRSK+ ++I L Q AS +
Sbjct: 197 ASRSKMSSMIDAEKLKLNWQTVKSASQM 224
>gi|374709389|ref|ZP_09713823.1| RNA-binding S4 domain-containing protein [Sporolactobacillus
inulinus CASD]
Length = 257
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 93/185 (50%), Gaps = 4/185 (2%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ H L++ + S R +DF+ P + K V GGY AER R +
Sbjct: 15 IDHFLDLIDQVSQRYIPRLTDFMDPRQQTILRSLIGKNDAVHLSIFGGYEHAERARALLL 74
Query: 141 HPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFL 199
P SDP +A L + F +H + LG++LG+GI+R KIGD+++ GE+ AQF+
Sbjct: 75 PPYFEPDSDPFDLAYLDVRYPAKFGSVTHPELLGALLGSGISRNKIGDLLI-GEEAAQFI 133
Query: 200 VVPELADYLITSLEKVGNVSVSCTRI-PLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
V EL Y + L VG +SVSC I P L T S T+ +SLR+D L S +
Sbjct: 134 CVKELEPYFMLHLTSVGKLSVSCRPILPKNLLHTADGWTYSEGTV-SSLRLDTLLSEIYH 192
Query: 259 LSRSK 263
L R K
Sbjct: 193 LPRVK 197
>gi|410657330|ref|YP_006909701.1| hypothetical protein DHBDCA_p687 [Dehalobacter sp. DCA]
gi|410660368|ref|YP_006912739.1| hypothetical protein DCF50_p747 [Dehalobacter sp. CF]
gi|409019685|gb|AFV01716.1| hypothetical protein DHBDCA_p687 [Dehalobacter sp. DCA]
gi|409022724|gb|AFV04754.1| hypothetical protein DCF50_p747 [Dehalobacter sp. CF]
Length = 267
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 74/142 (52%), Gaps = 6/142 (4%)
Query: 127 GGYPQAERCRL----SVGHPEALTSDPDIVAALSITGNF-GFQPCSHGDFLGSILGTGIA 181
GGY AER L PE + D + I + SH DFLGS++G GI
Sbjct: 67 GGYEGAERTVLVFLPDYLEPEQVIQDDEYCPLAFIRAEYPADSGLSHRDFLGSLMGAGIK 126
Query: 182 REKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFK 241
RE +GDI++ GE +V+ E+ +LI +LE VG V + IP L+ + K
Sbjct: 127 RETVGDILV-GENSTDLIVLKEILPFLINNLESVGRVKIKTAIIPAGLLQIPEEKVLLLK 185
Query: 242 TIEASLRVDALASAGFKLSRSK 263
ASLR+D++ +AGF LSR+K
Sbjct: 186 DTVASLRLDSVVAAGFNLSRTK 207
>gi|357058626|ref|ZP_09119474.1| hypothetical protein HMPREF9334_01191 [Selenomonas infelix ATCC
43532]
gi|355373582|gb|EHG20898.1| hypothetical protein HMPREF9334_01191 [Selenomonas infelix ATCC
43532]
Length = 264
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 85/160 (53%), Gaps = 2/160 (1%)
Query: 126 QGGYPQAERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGY AER R + H + A T D +A + N F +H D LG+++G GI RE
Sbjct: 67 DGGYAGAERQRAMLCHRDFAGTPDGFAIACVEAAWNGQFARLTHRDVLGAVMGLGIEREL 126
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
+GDI L A+ + ++AD+++++L +G V V L A+ RTK +
Sbjct: 127 VGDI-LPASDTARIICDAKIADFIVSNLTMIGAVGVKTALSDLAAIPPREERTKEIRATV 185
Query: 245 ASLRVDALASAGFKLSRSKLVNLIRYSSLASLVQISAKAS 284
ASLR+D++ +AGF +SRS+ + I + Q +A AS
Sbjct: 186 ASLRLDSIVAAGFGISRSRAADDIAADKVKLNWQSAASAS 225
>gi|238927880|ref|ZP_04659640.1| ribosomal protein S4e [Selenomonas flueggei ATCC 43531]
gi|238884213|gb|EEQ47851.1| ribosomal protein S4e [Selenomonas flueggei ATCC 43531]
Length = 264
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 84/166 (50%), Gaps = 2/166 (1%)
Query: 120 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT 178
D++ GGY AER R + H + D +A + N F +H D LG+++G
Sbjct: 61 DLQLDFDGGYQGAERARAMLRHRDFAGRTEDFGIACVEAAWNGQFARLTHRDVLGAVMGL 120
Query: 179 GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK 238
GI RE IGDI L A+ L ++A +LI +L +G VSV L + RTK
Sbjct: 121 GIEREMIGDI-LPAPDTAKILCDAKIAPFLIENLTMIGAVSVKTAPSDLAEIAPREERTK 179
Query: 239 SFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSLASLVQISAKAS 284
+ ASLR+D++ +AGF +SRS+ + I + Q +A AS
Sbjct: 180 EIRATVASLRLDSIVAAGFGISRSRAADDIAADKVKHNWQSTASAS 225
>gi|404329203|ref|ZP_10969651.1| RNA-binding S4 domain-containing protein [Sporolactobacillus vineae
DSM 21990 = SL153]
Length = 257
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 6/172 (3%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITG 159
+DFL P + + + K DV+ GGYP AER R ++ P + + + ++
Sbjct: 34 TDFLDPRQQRVLELIIGKNDDVRVTFSGGYPDAERKR-ALLLPPYIPEEGEAFELTAVEV 92
Query: 160 NFG--FQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
F F SH + LG++ GTG+ R+KIGD+++ G++ AQF+ ++ YL +L VG
Sbjct: 93 AFASKFISLSHPELLGALTGTGVNRDKIGDLMVTGDR-AQFICTKDIEPYLRLNLTSVGK 151
Query: 218 VSVSCTRIPLLALEYEP-PRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+VSC I L + +S+ T+ SLR+DA+AS + LSR+K LI
Sbjct: 152 NAVSCQAIGKDELIHNQLNWVESWGTV-PSLRLDAVASEIYHLSRAKTAELI 202
>gi|333371306|ref|ZP_08463261.1| S4 domain protein [Desmospora sp. 8437]
gi|332976333|gb|EGK13189.1| S4 domain protein [Desmospora sp. 8437]
Length = 259
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 6/191 (3%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V+ +L+ + R + + FL P + M +++ ++ GG+ AER R +
Sbjct: 19 VERVLDWTEQVERRSRPVLTPFLNPREQTITDMLVKRAPELGVTFDGGFFDAERKRARIF 78
Query: 141 HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLV 200
P D + ++ L + P H D LGS+LG G+ RE IGD+ L E Q ++
Sbjct: 79 PPWQEEGD-NGLSYLELESVDRSSPLKHPDVLGSLLGLGVKREVIGDL-LPRETHCQVII 136
Query: 201 VPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPR--TKSFKTIEASLRVDALASAGFK 258
E+ DY+ L +VG + V T I E PP+ T+ ASLRVDAL + F+
Sbjct: 137 AGEILDYIRMQLNRVGRIPVRMTEIK--REEIRPPQQETEVVTVSVASLRVDALVAEAFR 194
Query: 259 LSRSKLVNLIR 269
LSR+K LI+
Sbjct: 195 LSRAKATPLIK 205
>gi|423682084|ref|ZP_17656923.1| RNA-binding protein [Bacillus licheniformis WX-02]
gi|383438858|gb|EID46633.1| RNA-binding protein [Bacillus licheniformis WX-02]
Length = 258
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 107/207 (51%), Gaps = 12/207 (5%)
Query: 81 VKHILEMARRASSRREVLHSDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
+ LE R + + + +DFL P V+ +S++ + +V+ GG+P+AER R +
Sbjct: 16 INQALEWKRIVAEQYRMKLTDFLDPREQVILQSVIG--QSDEVRLEFFGGFPEAERKR-A 72
Query: 139 VGHPE-ALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
V PE A S D + A + F H + LGS++G G+ R+K GD+I +
Sbjct: 73 VLFPEYAEPSAEDFQLQAWEVIYPQKFASIEHRELLGSLMGIGLKRQKFGDLIF-SDGTW 131
Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
QF+ E+AD++ T L ++G V VS +IPL L+ + +SLR+DA+ SA
Sbjct: 132 QFICSEEVADFVFTQLTQIGKVKVSLEKIPLSKLKVPEQDVEIRDDTVSSLRLDAICSAM 191
Query: 257 FKLSRSKLVNLIRYSSLASLVQISAKA 283
+ SR K L++ LV+++ K
Sbjct: 192 SRQSRQKAQVLVK----NGLVKVNWKV 214
>gi|153853144|ref|ZP_01994553.1| hypothetical protein DORLON_00538 [Dorea longicatena DSM 13814]
gi|149753930|gb|EDM63861.1| S4 domain protein [Dorea longicatena DSM 13814]
Length = 251
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 105/187 (56%), Gaps = 8/187 (4%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
K ++E++R A +R V+ SDFL L + + + GGY +ER +++V
Sbjct: 10 KRLVELSRLAYNRGIVIFSDFLNLNELNILHTTPKDMFLSQYKTYGGYDLSER-QMAVFL 68
Query: 142 PEALTSDPD----IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
P+AL D + I+ + F + +H D+LG+++ GI R K+GDII++ +KG
Sbjct: 69 PDALYYDYEYPIQIIEVTPSSKRFA-EDLTHRDYLGALMNLGIERSKVGDIIVEDQKGLI 127
Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
F V ELA+Y+ +L V + +V+ + + ++YE PR + K +S+R+D++ + +
Sbjct: 128 F-VKEELAEYIADNLTVVRHTNVNTSIGKGVKVDYE-PRFEELKGTVSSIRLDSVLALAY 185
Query: 258 KLSRSKL 264
LSRSK+
Sbjct: 186 PLSRSKI 192
>gi|308069866|ref|YP_003871471.1| hypothetical protein PPE_03113 [Paenibacillus polymyxa E681]
gi|305859145|gb|ADM70933.1| Uncharacterized conserved protein, contains S4-like domain
[Paenibacillus polymyxa E681]
Length = 260
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 96/188 (51%), Gaps = 7/188 (3%)
Query: 86 EMARRASSRREVLHSDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
E A + E +DFL P + E++ + E ++ GGY +ER R +
Sbjct: 22 EWISHAGAYHEQKLTDFLDPRQQYILETLASKEDKVTIRV--DGGYMASERKRALIAPDY 79
Query: 144 ALTSDPDI-VAALSITGN-FGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVV 201
+ ++ + LSIT + HGD+LG++LG GI R KIGDI + + G LV
Sbjct: 80 SYLDGEEMGIQVLSITSDDHKVGTLEHGDYLGALLGLGIKRGKIGDIHVL-DDGCHVLVA 138
Query: 202 PELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSR 261
E+ D++ L++V V V +P+ +L + ++ ASLR+D +AS +KLSR
Sbjct: 139 SEIGDFMTMHLQQVHRVHVWTELLPVASLRTKEVALEAIDLTVASLRLDGIASDVYKLSR 198
Query: 262 SKLVNLIR 269
SK++ IR
Sbjct: 199 SKILTPIR 206
>gi|339009200|ref|ZP_08641772.1| hypothetical protein BRLA_c30190 [Brevibacillus laterosporus LMG
15441]
gi|421873603|ref|ZP_16305215.1| S4 domain protein [Brevibacillus laterosporus GI-9]
gi|338773678|gb|EGP33209.1| hypothetical protein BRLA_c30190 [Brevibacillus laterosporus LMG
15441]
gi|372457390|emb|CCF14764.1| S4 domain protein [Brevibacillus laterosporus GI-9]
Length = 257
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 94/192 (48%), Gaps = 6/192 (3%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V+ LEM R R+ + +DFL P L ++ DV+ A GGY AER R ++
Sbjct: 15 VERALEMLRLVDERQIIRLTDFLDPRQLFILQSLTSQVQDVRVSASGGYDGAERVR-ALL 73
Query: 141 HPEALT-SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
HP + D D + I GN F H D +G++L GI REK GDI++ E Q
Sbjct: 74 HPSYIVPEDVDFGLRLFEIKGNQRFIAWEHRDVMGALLHVGIKREKFGDILV-SEHSCQT 132
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA-SLRVDALASAGF 257
+V E+AD++ + + + VS I L P + + KT S R+DA+
Sbjct: 133 VVAEEIADFVRMQVASIHRIPVSLQEISFAELTV-PEKKGTNKTFTVMSARLDAIIGEVC 191
Query: 258 KLSRSKLVNLIR 269
KLSR+K + IR
Sbjct: 192 KLSRAKALLPIR 203
>gi|52080143|ref|YP_078934.1| RNA-binding protein [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|319646078|ref|ZP_08000308.1| YlmH protein [Bacillus sp. BT1B_CT2]
gi|404489031|ref|YP_006713137.1| RNA-binding protein YlmH [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|52003354|gb|AAU23296.1| RNA-binding protein [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|52348021|gb|AAU40655.1| putative RNA-binding protein YlmH [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|317391828|gb|EFV72625.1| YlmH protein [Bacillus sp. BT1B_CT2]
Length = 258
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 107/207 (51%), Gaps = 12/207 (5%)
Query: 81 VKHILEMARRASSRREVLHSDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
+ LE R + + + +DFL P V+ +S++ + +V+ GG+P+AER R +
Sbjct: 16 IDQALEWKRIVAEQYRMKLTDFLDPREQVILQSVIG--QSDEVRLEFFGGFPEAERKR-A 72
Query: 139 VGHPE-ALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
V PE A S D + A + F H + LGS++G G+ R+K GD+I +
Sbjct: 73 VLFPEYAEPSAEDFQLQAWEVIYPQKFASIEHRELLGSLMGIGLKRQKFGDLIF-SDGTW 131
Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
QF+ E+AD++ T L ++G V VS +IPL L+ + +SLR+DA+ SA
Sbjct: 132 QFICSEEVADFVFTQLTQIGKVKVSLEKIPLSKLKVPEQDVEIRDDTVSSLRLDAICSAM 191
Query: 257 FKLSRSKLVNLIRYSSLASLVQISAKA 283
+ SR K L++ LV+++ K
Sbjct: 192 SRQSRQKAQVLVK----NGLVKVNWKV 214
>gi|403386619|ref|ZP_10928676.1| RNA-binding protein [Clostridium sp. JC122]
Length = 258
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 92/182 (50%), Gaps = 9/182 (4%)
Query: 91 ASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD 150
A +V++S F + + ++EK D K G + + ER +S+ E + P
Sbjct: 29 AEKTNKVVYSRFFIYKGIYNKLKSMEKSIDAKIYCNGIFDECERVMISISSYEIPSYYP- 87
Query: 151 IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLIT 210
+ L I F+ SH D+LGSI+ GI RE +GD+I+Q + A VV E+ D+LI
Sbjct: 88 -MVLLKIVNKSKFKNLSHKDYLGSIMAQGIKRELLGDLIVQ-DNSAYVPVVEEIVDFLIL 145
Query: 211 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFK---TIEASLRVDALASAGFKLSRSKLVNL 267
+L +G C I L P+ +F+ I SLR+D + S+ +SRSK ++L
Sbjct: 146 NLNSIG--KCPCEVIELQDNVLNIPKI-NFEEKIVIVTSLRLDNIISSICNISRSKALDL 202
Query: 268 IR 269
I+
Sbjct: 203 IQ 204
>gi|166031850|ref|ZP_02234679.1| hypothetical protein DORFOR_01551 [Dorea formicigenerans ATCC
27755]
gi|166028303|gb|EDR47060.1| S4 domain protein [Dorea formicigenerans ATCC 27755]
Length = 251
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 98/190 (51%), Gaps = 6/190 (3%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
K ++E++ A SR V SDFL L + + GGY AER ++
Sbjct: 10 KRLIELSNLAFSRDIVTFSDFLNLNELNILHRTPKDQFKARFETYGGYELAER-QMVAFL 68
Query: 142 PEALTSDPDI-VAALSIT-GNFGF-QPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
P+AL D + AL I N F + +H D+LG+I+ G +R KIGDII Q + GA
Sbjct: 69 PDALYYDYGYPMQALKICPVNKRFAEDLTHRDYLGAIMNLGTSRTKIGDII-QADDGAIV 127
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
V E++DY++ +L ++ + +++ R L + YE P + K S+R+D + S +
Sbjct: 128 FVKEEISDYIMKNLTRIRHTTITVERRELSDISYE-PHFEELKGTVPSVRLDTVLSVAYP 186
Query: 259 LSRSKLVNLI 268
LSRSKL I
Sbjct: 187 LSRSKLTTYI 196
>gi|398813824|ref|ZP_10572515.1| hypothetical protein PMI05_00924 [Brevibacillus sp. BC25]
gi|398037877|gb|EJL31054.1| hypothetical protein PMI05_00924 [Brevibacillus sp. BC25]
Length = 257
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 105/210 (50%), Gaps = 20/210 (9%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA----DVKAVAQGGYPQAERCR 136
V+ LEM + + + +DF+ P +M E L+ DVK GGY AER R
Sbjct: 15 VERALEMLTQVERTQAMRLTDFVDP----RQLMIFESLSSQVRDVKVSPYGGYEGAERVR 70
Query: 137 LSVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEK 194
+ + HPE L +P+ + L+I + F H D +G++LG G+ REK GD +L
Sbjct: 71 III-HPEYLPVEPEDYRLTLLAIKADQRFHVLEHRDVMGAMLGVGMKREKFGD-MLTDSA 128
Query: 195 GAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSF-KTIEA-SLRVDAL 252
G+ +V E+AD++ + ++ SV R+ A + PP K KTI S R+DA+
Sbjct: 129 GSYTIVAEEVADFVCAQVTQIHRTSVQFERVAWEA--FTPPAPKFVEKTITVPSPRIDAI 186
Query: 253 ASAGFKLSRSKLVNLIRYSSLASLVQISAK 282
+SR+K + IR A V+I+ K
Sbjct: 187 IGEVHNMSRAKALVPIR----AGKVKINWK 212
>gi|258508284|ref|YP_003171035.1| RNA-binding S4 domain-containing protein [Lactobacillus rhamnosus
GG]
gi|385827956|ref|YP_005865728.1| cell division protein [Lactobacillus rhamnosus GG]
gi|257148211|emb|CAR87184.1| RNA-binding S4 domain protein [Lactobacillus rhamnosus GG]
gi|259649601|dbj|BAI41763.1| cell division protein [Lactobacillus rhamnosus GG]
Length = 259
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 91/191 (47%), Gaps = 4/191 (2%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ H E+ A + + +DF P + + D+K V GGYP AER RL +
Sbjct: 16 IDHFAELIETARTEYRAVLTDFTDPRQRLIAASLINAHDDMKLVHFGGYPHAERQRL-IF 74
Query: 141 HPEALTSDP-DI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
P+ + P D + L + F H G++L G+ R+ GDI+ G + QF
Sbjct: 75 APDYFAAQPADFDIRLLQVVYPEKFAEMHHSTIQGTLLNAGLDRDVFGDIVTDG-RTWQF 133
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
V + D++++++ K+G V V T PL A +S ++LR+DA+ + GF
Sbjct: 134 FVAAHMEDWVMSNITKIGRVGVHFTDYPLAAAVTPENDWESISFSVSALRLDAIVAHGFN 193
Query: 259 LSRSKLVNLIR 269
+SR + LI+
Sbjct: 194 MSRQRAKMLIQ 204
>gi|423073771|ref|ZP_17062508.1| S4 domain protein [Desulfitobacterium hafniense DP7]
gi|361855393|gb|EHL07369.1| S4 domain protein [Desulfitobacterium hafniense DP7]
Length = 265
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 109/221 (49%), Gaps = 12/221 (5%)
Query: 69 LKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLK--ESMMALEKLADVKAVAQ 126
LK +K E H+L++ A +R+ + + FL + E ++ E LA +
Sbjct: 10 LKFWTEKEMRLEGAHLLDLCNEALRKRKPVWTPFLGQALANWLEGILQREGLA---FRLE 66
Query: 127 GGYPQAERCR-LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
GG+ AER R L V P+ L + P + AL T H LGS++G G+ RE I
Sbjct: 67 GGFSDAERVRFLVVADPDVLDNVPSEIRALQATPTDPRGKLDHRQVLGSLMGLGLKREVI 126
Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPP--RTKSFKTI 243
GDI L E+ V E+AD+L++ +K G + R+ + + E P + K +
Sbjct: 127 GDIRLT-EQCCFVAVAQEIADFLLSQWDKAGRERI---RVEAVEQDVEIPLEQGKERRIT 182
Query: 244 EASLRVDALASAGFKLSRSKLVNLIRYSSLASLVQISAKAS 284
AS R+DA+AS+GF +SR+ LI+ + ++ AKA
Sbjct: 183 AASSRIDAVASSGFNVSRTMFQELIQQGKVKRNDRMVAKAD 223
>gi|374324832|ref|YP_005077961.1| hypothetical protein HPL003_25110 [Paenibacillus terrae HPL-003]
gi|357203841|gb|AET61738.1| hypothetical protein HPL003_25110 [Paenibacillus terrae HPL-003]
Length = 260
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 94/197 (47%), Gaps = 11/197 (5%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA----DVKAVAQGGYPQAER 134
E V E A + E +DFL P + LE LA V GGY +ER
Sbjct: 15 EYVDRASEWISHAGAYHEQKLTDFLDP----RQLYILETLASKEDKVTIRVDGGYEASER 70
Query: 135 CRLSVGHPEALTSDPDI-VAALSITGN-FGFQPCSHGDFLGSILGTGIAREKIGDIILQG 192
R + + ++ + LS+T + HGD+LG+ILG GI R KIGDI +
Sbjct: 71 KRALIAPDYSYVDGENMGIQVLSVTSDDHKISTLEHGDYLGAILGLGIKRGKIGDIHVL- 129
Query: 193 EKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDAL 252
+ G LV E++D++ L++V V V +P L + + ASLR+D +
Sbjct: 130 DDGCHVLVASEISDFITMHLQQVHRVHVWTELLPPENLRTKDVALEPLDLTVASLRLDGI 189
Query: 253 ASAGFKLSRSKLVNLIR 269
AS +KLSRSK++ IR
Sbjct: 190 ASDVYKLSRSKILTPIR 206
>gi|344996021|ref|YP_004798364.1| RNA-binding S4 domain-containing protein [Caldicellulosiruptor
lactoaceticus 6A]
gi|343964240|gb|AEM73387.1| RNA-binding S4 domain protein [Caldicellulosiruptor lactoaceticus
6A]
Length = 260
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 105/200 (52%), Gaps = 18/200 (9%)
Query: 99 HSDFLTPPVLKESMMALEKLAD-VKAVAQGGYPQAERCRLSV------GHPEALTSDPDI 151
+SDFL+P +K ++ L K + + GGY +ER L++ + E LT P
Sbjct: 33 YSDFLSPFAIKYAVEVLLKNQNHILHRCWGGYEGSERNILAIFSSDFEEYAENLTY-PIQ 91
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
+ N SH LGS++G G+ R+KIGDI+++ E A V E+A Y++T+
Sbjct: 92 TILIEAKNNL-----SHRQILGSLIGNGLKRDKIGDILVK-ENSALVFVKDEIATYIVTN 145
Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTI---EASLRVDALASAGFKLSRSKLVNLI 268
++K+G V C+ + ++ + S K I ASLRVD++ S GF +SR + +LI
Sbjct: 146 IDKIGKEKVKCSIVENGQIDIKWFINNSSKRIVYTVASLRVDSVISHGFGISREEAADLI 205
Query: 269 RYSSLA-SLVQISAKASAIR 287
R +A + V I + A++
Sbjct: 206 RQMKVAVNWVYIDKPSYAVK 225
>gi|312793530|ref|YP_004026453.1| RNA-binding S4 domain-containing protein [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312180670|gb|ADQ40840.1| RNA-binding S4 domain protein [Caldicellulosiruptor kristjanssonii
177R1B]
Length = 260
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 105/200 (52%), Gaps = 18/200 (9%)
Query: 99 HSDFLTPPVLKESMMALEKLAD-VKAVAQGGYPQAERCRLSV------GHPEALTSDPDI 151
+SDFL+P +K ++ L K + + GGY +ER L++ + E LT P
Sbjct: 33 YSDFLSPFAIKYAVEVLLKSQNHILHRCWGGYEGSERNILAIFSSDFEEYAENLTY-PIQ 91
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
+ N SH LGS++G G+ R+KIGDI+++ E A V E+A Y++T+
Sbjct: 92 TILIEAKNNL-----SHRQILGSLIGNGLKRDKIGDILVK-ENSALVFVKDEIATYIVTN 145
Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTI---EASLRVDALASAGFKLSRSKLVNLI 268
++K+G V C+ + ++ + S K I ASLRVD++ S GF +SR + +LI
Sbjct: 146 IDKIGKEKVKCSIVENGQIDIKWFINNSSKRIVYTVASLRVDSVISHGFGISREEAADLI 205
Query: 269 RYSSLA-SLVQISAKASAIR 287
R +A + V I + A++
Sbjct: 206 RQMKVAVNWVYIDKPSYAVK 225
>gi|326803766|ref|YP_004321584.1| S4 domain-containing protein [Aerococcus urinae ACS-120-V-Col10a]
gi|326651380|gb|AEA01563.1| S4 domain protein [Aerococcus urinae ACS-120-V-Col10a]
Length = 261
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 96/200 (48%), Gaps = 9/200 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V ++ R +S + S FL P + K D++ + GGYPQAE R+ +
Sbjct: 17 VDQVINWKNRVASSFQPFLSHFLDPREQAIVYSIIGKDEDIQVIDFGGYPQAEMRRMIIA 76
Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFL 199
+D D ++ + I F H LG++LG G+ R +IGDII + QF
Sbjct: 77 PRYEEVNDGDFNISLIQINYAAKFNHIEHRQVLGTLLGQGLQRNRIGDII-HSDLDWQFF 135
Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFK 258
+ L D++ + ++++G VSV + ++ P +++ AS R+D + S GF
Sbjct: 136 IDASLIDFVNSQIQRIGKVSVKLEAVDFADRIQVADPWQPLERSL-ASFRMDLVLSEGFN 194
Query: 259 LSRSKL-----VNLIRYSSL 273
LSRSK+ L++Y+ +
Sbjct: 195 LSRSKVKSAIEAGLVKYNWM 214
>gi|427405920|ref|ZP_18896125.1| hypothetical protein HMPREF9161_00485 [Selenomonas sp. F0473]
gi|425708761|gb|EKU71800.1| hypothetical protein HMPREF9161_00485 [Selenomonas sp. F0473]
Length = 264
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 101/199 (50%), Gaps = 6/199 (3%)
Query: 71 GVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYP 130
G G++ A+ +L++A R+ S FL P + + ++ GGY
Sbjct: 16 GEGEETAV----RLLDLAESVMKTRKFRISPFLDPYGQEIAETVRASFDGLRLDFDGGYA 71
Query: 131 QAERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
AER R + H + A T +A ++ N F SH D LG+++G GIAR+ +GDI+
Sbjct: 72 GAERQRAMLRHEDFAGTPGGYEIACVAAAWNGQFARLSHRDVLGAVMGLGIARDGVGDIL 131
Query: 190 LQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRV 249
+ + A+ L ++AD++ L +G V V+ + L + R K + ASLR+
Sbjct: 132 V-AQDTAKILCDAKIADFIAERLTMIGAVHVTASLGDLAEIAPREERIKEIRATVASLRL 190
Query: 250 DALASAGFKLSRSKLVNLI 268
D++A+AGF +SRS+ + I
Sbjct: 191 DSVAAAGFGISRSRAADDI 209
>gi|90962019|ref|YP_535935.1| RNA binding protein [Lactobacillus salivarius UCC118]
gi|90821213|gb|ABD99852.1| RNA binding protein [Lactobacillus salivarius UCC118]
Length = 262
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 81/170 (47%), Gaps = 4/170 (2%)
Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL-TSDPDI-VAALSITG 159
FL P + + K DVK GGY AER R ++ +P D D + + I
Sbjct: 38 FLNPREQYIAQSLIHKKQDVKVSFSGGYKNAERKR-AIFYPSYYEVQDDDFNLELIMIKY 96
Query: 160 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 219
F +HG LG++ +G+ RE IGDII Q + QFL E++DY +++VG +
Sbjct: 97 PVKFTSLTHGQILGTLANSGLDREVIGDIIEQNDTW-QFLCEKEVSDYFRLQIDRVGKIK 155
Query: 220 VSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIR 269
V PL + + +SLR+D+L S F +SR NLI+
Sbjct: 156 VRLEDAPLDEIVVPELNWQEKMVTSSSLRIDSLVSVTFNISRESSKNLIK 205
>gi|301300395|ref|ZP_07206597.1| S4 domain protein [Lactobacillus salivarius ACS-116-V-Col5a]
gi|300851997|gb|EFK79679.1| S4 domain protein [Lactobacillus salivarius ACS-116-V-Col5a]
Length = 262
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 81/170 (47%), Gaps = 4/170 (2%)
Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL-TSDPDI-VAALSITG 159
FL P + + K DVK GGY AER R ++ +P D D + + I
Sbjct: 38 FLNPREQYIAQSLIHKNQDVKVSFSGGYENAERKR-TIFYPSYYEVQDDDFNLELIMIKY 96
Query: 160 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 219
F +HG LG++ +G+ RE IGDII Q + QFL E++DY +++VG +
Sbjct: 97 PVKFTSLTHGQILGTLANSGLDREVIGDIIEQNDTW-QFLCEKEVSDYFRLQIDRVGKIK 155
Query: 220 VSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIR 269
V PL + + +SLR+D+L S F +SR NLI+
Sbjct: 156 VRLEDAPLDEIVVPELNWQEKMVTSSSLRIDSLVSVTFNISRESSKNLIK 205
>gi|227509386|ref|ZP_03939435.1| ribosomal protein S4e [Lactobacillus brevis subsp. gravesensis ATCC
27305]
gi|227191098|gb|EEI71165.1| ribosomal protein S4e [Lactobacillus brevis subsp. gravesensis ATCC
27305]
Length = 264
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 83/171 (48%), Gaps = 4/171 (2%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 157
++FL P L + + + GGY AE R ++ +PE T D + A I
Sbjct: 38 TEFLNPRQLYILESIINRHDGIHFSTYGGYSGAELQR-AIVYPEYFTPKTDDFRITAFEI 96
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
F +HG LGS++G GI R +GDII G K QF+V E+ADY+ ++ +G
Sbjct: 97 DYPSKFATLAHGKILGSLMGAGIERNVVGDIITDGLK-WQFMVQSEMADYVKAQVDHIGK 155
Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+ V I + +++ T +SLRVDAL S GF +SR L+
Sbjct: 156 IKVKLEDISPEGVITPVDESETLTTTVSSLRVDALISDGFHISRHHAKELV 206
>gi|365851170|ref|ZP_09391611.1| S4 domain protein [Lactobacillus parafarraginis F0439]
gi|363717369|gb|EHM00747.1| S4 domain protein [Lactobacillus parafarraginis F0439]
Length = 249
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 73/144 (50%), Gaps = 4/144 (2%)
Query: 127 GGYPQAERCRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREK 184
GGY AE R ++ +PE T + S ++ F SHG LGSI+G GI R+
Sbjct: 50 GGYEGAELKR-AIVYPEYFTPKNEDFHITSFVIDYPSKFATLSHGQVLGSIMGAGIERDV 108
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
IGDII G QFL E+ADY+ ++KVG + V I L ++ T
Sbjct: 109 IGDIITDG-LSWQFLCQSEMADYIKAQVDKVGKIKVKLEVIESDQLVTPVDESEEVSTTI 167
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
+SLRVDAL S GF +SR LI
Sbjct: 168 SSLRVDALVSEGFHISRHHAKELI 191
>gi|313888339|ref|ZP_07822010.1| S4 domain protein [Peptoniphilus harei ACS-146-V-Sch2b]
gi|312845742|gb|EFR33132.1| S4 domain protein [Peptoniphilus harei ACS-146-V-Sch2b]
Length = 260
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 95/190 (50%), Gaps = 26/190 (13%)
Query: 100 SDFLTPPVLKESMMALEKLAD-VKAVAQGGYPQAERCRLSVGHPEAL--TSDPDIVAALS 156
+DFL P + S+ L + D + GGY +E + + +P + D D+V
Sbjct: 41 TDFLNPREINLSISILNRFKDNISYKVDGGYEDSESSIIYI-YPSYMYENEDDDLVLFKF 99
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
T N HGD LGSILG I R KIGDI++ GEK F V E+A+++ +L KV
Sbjct: 100 DTNN----KIKHGDILGSILGLSIDRGKIGDILI-GEKYTYFFVKREIANFVEINLTKVS 154
Query: 217 NVSVSCTR------IPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRY 270
++ +R +P +Y+ K I +S R+D L + F LSRSK+ +I+
Sbjct: 155 RYNILLSREDDTSGLPKKEYDYK-------KIIVSSFRLDNLIAKVFNLSRSKVKEMIK- 206
Query: 271 SSLASLVQIS 280
+ LV+++
Sbjct: 207 ---SELVKVN 213
>gi|406669221|ref|ZP_11076501.1| hypothetical protein HMPREF9707_00404 [Facklamia ignava CCUG 37419]
gi|405584018|gb|EKB57944.1| hypothetical protein HMPREF9707_00404 [Facklamia ignava CCUG 37419]
Length = 260
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 95/179 (53%), Gaps = 14/179 (7%)
Query: 102 FLTPPVLKESMMA---LEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALS 156
FLTP +E M+A +E+ D K GG ER R + +P+ +D D + L
Sbjct: 38 FLTP---REQMIAQQIVEEYGDFKIAFYGGIHATERRR-GLIYPDYYQPTDVDYGLTLLQ 93
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
+ F SHG LG+++ G+ R +IGDII GE+ Q +V E++ YLI S++K+
Sbjct: 94 LHYPVKFADISHGKILGTLMSQGVDRNRIGDIISDGEQ-WQVVVEHEISTYLIHSIDKIS 152
Query: 217 NVSVSCTRIP--LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSL 273
NV V +P L+ + E T+S + +S+R+D L S + SR + +LI+ ++
Sbjct: 153 NVGVRLEEMPAELMLISQEEWETESI--VVSSMRLDTLISNVYNFSRQRAKDLIQQGNI 209
>gi|291533844|emb|CBL06957.1| lipoprotein signal peptidase [Megamonas hypermegale ART12/1]
Length = 418
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 96/190 (50%), Gaps = 1/190 (0%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
E V +++ + R+ +DFL P + + + + GGY AER +
Sbjct: 18 EIVIKLIDAVEAVNKTRKFRATDFLDPYGCEIAETVVAHYDGISVDFFGGYIGAERQCAN 77
Query: 139 VGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
H + + ++ + T N F SH D LG+++G GI RE+IGD+++ +
Sbjct: 78 FVHEDFMGKPSYNISVVKATWNDKFYRLSHRDVLGALMGLGIKREQIGDLLIT-LGMVKI 136
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
+ ++AD+++ +L ++ + VSC L + R K + ASLR+D++A++GF
Sbjct: 137 ICTTKMADFILQNLTQISSAKVSCELDNLGTIAPREERCKEITSTVASLRIDSIAASGFG 196
Query: 259 LSRSKLVNLI 268
SRSK+ ++I
Sbjct: 197 ASRSKMSSMI 206
>gi|227891037|ref|ZP_04008842.1| ribosomal protein S4e [Lactobacillus salivarius ATCC 11741]
gi|227867126|gb|EEJ74547.1| ribosomal protein S4e [Lactobacillus salivarius ATCC 11741]
Length = 262
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 81/170 (47%), Gaps = 4/170 (2%)
Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL-TSDPDI-VAALSITG 159
FL P + + K DVK GGY AER R ++ +P D D + + I
Sbjct: 38 FLNPREQYIAQSLIHKNQDVKVSFSGGYENAERKR-AIFYPSYYEVQDDDFNLELIMIKY 96
Query: 160 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 219
F +HG LG++ +G+ RE IGDII Q + QFL E++DY +++VG +
Sbjct: 97 PVKFTSLTHGQILGTLANSGLDREVIGDIIEQNDTW-QFLCEKEVSDYFRLQIDRVGKIK 155
Query: 220 VSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIR 269
V PL + + +SLR+D+L S F +SR NLI+
Sbjct: 156 VRLEDAPLDEIVVPELNWQEKMVTSSSLRIDSLVSVTFNISRESSKNLIK 205
>gi|258539498|ref|YP_003173997.1| RNA-binding S4 domain-containing protein [Lactobacillus rhamnosus
Lc 705]
gi|257151174|emb|CAR90146.1| RNA-binding S4 domain protein [Lactobacillus rhamnosus Lc 705]
Length = 259
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 95/196 (48%), Gaps = 14/196 (7%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ H E+ A + + +DF P + + D+K V GGYP AER RL +
Sbjct: 16 IDHFAELIETARTEYRAVLTDFTDPRQRLIAASLINAHDDMKLVHFGGYPHAERQRL-IF 74
Query: 141 HPEALTSDP-DI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
P+ + P D + L + F H G++L G+ R+ GDI+ G + QF
Sbjct: 75 APDYFAAQPADFDIRLLQVVYPEKFAEMHHSTIQGTLLNAGLDRDVFGDIVTDG-RTWQF 133
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLAL-----EYEPPRTKSFKTIEASLRVDALA 253
V + D++++++ K+G V V T PL A ++EP SF ++LR+DA+
Sbjct: 134 FVAAHMEDWVMSNITKIGRVGVHFTDYPLDAAVTPENDWEPI---SFSV--SALRLDAIV 188
Query: 254 SAGFKLSRSKLVNLIR 269
+ GF +SR + LI+
Sbjct: 189 AHGFNMSRQRAKMLIQ 204
>gi|199598147|ref|ZP_03211569.1| Cell division protein, S4-like domain [Lactobacillus rhamnosus
HN001]
gi|229552082|ref|ZP_04440807.1| ribosomal protein S4e [Lactobacillus rhamnosus LMS2-1]
gi|385835145|ref|YP_005872919.1| S4 domain-containing protein [Lactobacillus rhamnosus ATCC 8530]
gi|418070509|ref|ZP_12707784.1| RNA-binding S4 domain-containing protein [Lactobacillus rhamnosus
R0011]
gi|421769069|ref|ZP_16205778.1| RNA-binding S4 domain-containing protein [Lactobacillus rhamnosus
LRHMDP2]
gi|421771332|ref|ZP_16207992.1| RNA-binding S4 domain-containing protein [Lactobacillus rhamnosus
LRHMDP3]
gi|423077664|ref|ZP_17066356.1| S4 domain protein [Lactobacillus rhamnosus ATCC 21052]
gi|199590908|gb|EDY98992.1| Cell division protein, S4-like domain [Lactobacillus rhamnosus
HN001]
gi|229314515|gb|EEN80488.1| ribosomal protein S4e [Lactobacillus rhamnosus LMS2-1]
gi|355394636|gb|AER64066.1| S4 domain protein [Lactobacillus rhamnosus ATCC 8530]
gi|357539929|gb|EHJ23946.1| RNA-binding S4 domain-containing protein [Lactobacillus rhamnosus
R0011]
gi|357553378|gb|EHJ35128.1| S4 domain protein [Lactobacillus rhamnosus ATCC 21052]
gi|411185465|gb|EKS52593.1| RNA-binding S4 domain-containing protein [Lactobacillus rhamnosus
LRHMDP2]
gi|411185918|gb|EKS53044.1| RNA-binding S4 domain-containing protein [Lactobacillus rhamnosus
LRHMDP3]
Length = 259
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 95/196 (48%), Gaps = 14/196 (7%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ H E+ A + + +DF P + + D+K V GGYP AER RL +
Sbjct: 16 IDHFAELIETARTEYRAVLTDFTDPRQRLIAASLINAHDDMKLVHFGGYPHAERQRL-IF 74
Query: 141 HPEALTSDP-DI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
P+ + P D + L + F H G++L G+ R+ GDI+ G + QF
Sbjct: 75 APDYFAAQPADFDIRLLQVVYPEKFAEMHHSTIQGTLLNAGLDRDVFGDIVTDG-RTWQF 133
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLAL-----EYEPPRTKSFKTIEASLRVDALA 253
V + D++++++ K+G V V T PL A ++EP SF ++LR+DA+
Sbjct: 134 FVAAHMEDWVMSNITKIGRVGVHFTDYPLDAAVTPENDWEPI---SFSV--SALRLDAIV 188
Query: 254 SAGFKLSRSKLVNLIR 269
+ GF +SR + LI+
Sbjct: 189 AHGFNMSRQRAKMLIQ 204
>gi|433545426|ref|ZP_20501780.1| hypothetical protein D478_17089 [Brevibacillus agri BAB-2500]
gi|432183249|gb|ELK40796.1| hypothetical protein D478_17089 [Brevibacillus agri BAB-2500]
Length = 257
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 114/221 (51%), Gaps = 17/221 (7%)
Query: 72 VGDKNAIEE---VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGG 128
V D A EE V+ LEM A ++ + +DF+ P ++ DVK A GG
Sbjct: 3 VFDHFAKEERPFVERALEMLTLAERKQAMRLTDFVDPRQWHIMKSLTSQVRDVKISASGG 62
Query: 129 YPQAERCRLSVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 186
Y AER R+ + HPE + +P+ +A L+I + F H D +G++L G+ REK G
Sbjct: 63 YEGAERVRVLI-HPEYIEVEPEDFRLALLAIKADQRFHTLEHRDVMGALLHAGMKREKFG 121
Query: 187 DIILQGEKGAQF-LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK-SFKTIE 244
D++ + G + +V E+AD++ T + ++ SV R+ + + PP T+ + KTI
Sbjct: 122 DMLT--DVGTCYAIVAEEVADFVCTQVTQIHRTSVQFERVAWES--FTPPATRFAEKTIT 177
Query: 245 A-SLRVDALASAGFKLSRSKLVNLIRYSSLASLVQISAKAS 284
S R+DA+ +SR+K + IR A V+++ K +
Sbjct: 178 VPSPRIDAVIGEVHNMSRAKALVPIR----AGKVKVNWKVT 214
>gi|373494493|ref|ZP_09585096.1| hypothetical protein HMPREF0380_00734 [Eubacterium infirmum F0142]
gi|371968423|gb|EHO85882.1| hypothetical protein HMPREF0380_00734 [Eubacterium infirmum F0142]
Length = 253
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 92/178 (51%), Gaps = 7/178 (3%)
Query: 91 ASSRREVLHSDFLTPPVLKESMMALEKLA--DVKAVAQGGYPQAERCRLSVGHPEALT-- 146
AS + + +SDFL P + + DV V GGY AER + P+ ++
Sbjct: 18 ASEKYMLTYSDFLDPHEHSAASNYIRGKGRFDVDIVFFGGYEDAERV-IMFCLPDYISIN 76
Query: 147 -SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELA 205
+ D++ + + G + HGD+LGS+ G G++R KIGDI++ E GA +V E+
Sbjct: 77 DASNDVLKVIRVRTKEGGKALRHGDYLGSLTGLGVSRGKIGDILVN-EDGADIIVSSEIV 135
Query: 206 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 263
++L+T+ K G +S + L L+ + K ASLR+D + S+ F LSR+K
Sbjct: 136 EFLMTNYAKAGRNYLSLSEHELSELKLPGNSRLTVKDTVASLRLDNIVSSAFGLSRAK 193
>gi|227524052|ref|ZP_03954101.1| ribosomal protein S4e [Lactobacillus hilgardii ATCC 8290]
gi|227088791|gb|EEI24103.1| ribosomal protein S4e [Lactobacillus hilgardii ATCC 8290]
Length = 264
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 83/171 (48%), Gaps = 4/171 (2%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 157
++FL P L + + + GGY AE R ++ +PE T D + A I
Sbjct: 38 TEFLNPRQLYILESIINRHDGIHFSTYGGYSGAELQR-AIVYPEYFTPKTDDFRITAFEI 96
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
F +HG LGS++G GI R +GDII G K QF+V E+ADY+ ++ +G
Sbjct: 97 DYPSKFATLAHGKILGSLMGVGIERNVVGDIITDGLK-WQFMVQSEMADYVKAQVDHIGK 155
Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+ V I + +++ T +SLRVDAL S GF +SR L+
Sbjct: 156 IKVMLEDISPEGVIAPVDESETLTTTVSSLRVDALISDGFHISRHHAKELV 206
>gi|385840602|ref|YP_005863926.1| RNA binding protein [Lactobacillus salivarius CECT 5713]
gi|300214723|gb|ADJ79139.1| RNA binding protein [Lactobacillus salivarius CECT 5713]
Length = 277
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 81/170 (47%), Gaps = 4/170 (2%)
Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL-TSDPDI-VAALSITG 159
FL P + + K DVK GGY AER R ++ +P D D + + I
Sbjct: 53 FLNPREQYIAQSLIHKNQDVKVSFSGGYENAERKR-AIFYPSYYEVQDDDFNLELIMIKY 111
Query: 160 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 219
F +HG LG++ +G+ RE IGDII Q + QFL E++DY +++VG +
Sbjct: 112 PVKFTSLTHGQILGTLANSGLDREVIGDIIEQNDTW-QFLCEKEVSDYFRLQIDRVGKIK 170
Query: 220 VSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIR 269
V PL + + +SLR+D+L S F +SR NLI+
Sbjct: 171 VRLEDAPLDEIVVPELNWQEKMVTSSSLRIDSLVSVTFNISRESSKNLIK 220
>gi|219670055|ref|YP_002460490.1| RNA-binding S4 domain-containing protein [Desulfitobacterium
hafniense DCB-2]
gi|219540315|gb|ACL22054.1| RNA-binding S4 domain protein [Desulfitobacterium hafniense DCB-2]
Length = 265
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 109/221 (49%), Gaps = 12/221 (5%)
Query: 69 LKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLK--ESMMALEKLADVKAVAQ 126
LK +K E H+L++ A + + + + FL + E ++ E LA +
Sbjct: 10 LKFWTEKEMRLEGAHLLDLCNEALGQGQPVWTPFLGQALANWLEGILQREGLA---FRLE 66
Query: 127 GGYPQAERCR-LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
GG+P AER R L V P+ L + P + AL T H LGS++G G+ RE I
Sbjct: 67 GGFPDAERVRFLMVEDPDVLDNVPSEIRALQATPADPRGKLDHRQVLGSLMGLGLKREVI 126
Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPP--RTKSFKTI 243
GDI L E+ V E+AD+L++ +K G + R+ + + E P + K +
Sbjct: 127 GDIRLT-EQCCFVAVAQEIADFLLSQWDKAGRERI---RVEAVEKDVEIPLEQGKERRIT 182
Query: 244 EASLRVDALASAGFKLSRSKLVNLIRYSSLASLVQISAKAS 284
AS R+DA+AS+GF +SR+ LI+ + ++ AKA
Sbjct: 183 AASSRIDAVASSGFNVSRTMFQELIQQGKVKRNDRMVAKAD 223
>gi|111075038|gb|ABH04885.1| uncharacterized conserved protein ylmH [Heliobacillus mobilis]
Length = 263
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 102/197 (51%), Gaps = 26/197 (13%)
Query: 79 EEVKHILEMAR--RASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCR 136
E++ I+++A R SS+++V +DFL P +LK +M L L DV + GGYP+AER R
Sbjct: 19 EKMARIIDLAELCRRSSKQQV--TDFLEPFLLKTAMDILRGLDDVSVLDDGGYPEAERKR 76
Query: 137 LSV--GHPEALTSDPDIVAALSITGNFG-FQPCSHGDFLGSILGTGIAREKIGDIILQGE 193
L + G E PD + + G H D+LGS+LG GI REK+GD+ L +
Sbjct: 77 LVLLPGEWEL----PDSRSCWLMGEVRGEVDKIGHRDYLGSLLGLGIRREKMGDLKLT-K 131
Query: 194 KGAQFLVVPELADYLITSLEKVGNVSVSCTRIPL---LALEYEPP----RTKSFKTIEAS 246
KG LV ++A Y+ +V R PL L E P + + AS
Sbjct: 132 KGCAVLVDRDVAAYVEAHWNQV-------QRFPLSVRLGDGDEKPDFIEKGEEKSVTVAS 184
Query: 247 LRVDALASAGFKLSRSK 263
LR DA+ +A + LSRSK
Sbjct: 185 LRFDAIVAAIWHLSRSK 201
>gi|89895631|ref|YP_519118.1| hypothetical protein DSY2885 [Desulfitobacterium hafniense Y51]
gi|89335079|dbj|BAE84674.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 268
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 108/221 (48%), Gaps = 12/221 (5%)
Query: 69 LKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLK--ESMMALEKLADVKAVAQ 126
LK +K E H+L++ A + + + + FL + E ++ E LA +
Sbjct: 13 LKFWTEKEMRLEGAHLLDLCNEALGQGQPVWTPFLGQALANWLEGILQREGLA---FRLE 69
Query: 127 GGYPQAERCR-LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
GG+P AER R L V P+ L + P + AL T H LGS++G G+ RE I
Sbjct: 70 GGFPDAERVRFLVVADPDVLDNVPSEIRALQATTVDPRGKLDHRQVLGSLMGLGLKREVI 129
Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPP--RTKSFKTI 243
GDI L E+ V E+AD+L++ +K G + R+ + E P + K +
Sbjct: 130 GDIRLT-EQCCFVAVAQEIADFLLSQWDKAGRERI---RVEAVEQNVEIPLEQGKERRIT 185
Query: 244 EASLRVDALASAGFKLSRSKLVNLIRYSSLASLVQISAKAS 284
AS R+DA+AS+GF +SR+ LI+ + ++ AKA
Sbjct: 186 AASSRIDAVASSGFNVSRTMFQELIQQGKVKRNDRMVAKAD 226
>gi|325288681|ref|YP_004264862.1| RNA-binding S4 domain-containing protein [Syntrophobotulus
glycolicus DSM 8271]
gi|324964082|gb|ADY54861.1| RNA-binding S4 domain protein [Syntrophobotulus glycolicus DSM
8271]
Length = 265
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 96/203 (47%), Gaps = 21/203 (10%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
++L V DK E K+ILE + + R + L L + A + +
Sbjct: 18 NMLARVLDKLEAAESKNILENTKFLNEREQDLAERMLP------------ECAQFRYLFH 65
Query: 127 GGYPQAERCRL----SVGHPE-ALTSDPDIVAALSITGNF-GFQPCSHGDFLGSILGTGI 180
GGY A R L +PE A + + +A I + SH DFLGS+LG GI
Sbjct: 66 GGYESASRKVLVFFPDYMNPEQAFQGEENCLAC--IRAEYPADNELSHRDFLGSLLGCGI 123
Query: 181 AREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSF 240
RE IGDI++ GE A +V+ E+ YL+ + E V V V I L+ + +
Sbjct: 124 KREAIGDILV-GEGSADIVVLKEILPYLLVNFEMVARVKVHVGEITAAELQVPEAKFRLI 182
Query: 241 KTIEASLRVDALASAGFKLSRSK 263
K ASLR+D +ASAGF +SR K
Sbjct: 183 KDTVASLRLDNIASAGFAVSREK 205
>gi|256850936|ref|ZP_05556325.1| photosystem II S4 domain-containing protein [Lactobacillus jensenii
27-2-CHN]
gi|260661150|ref|ZP_05862064.1| photosystem II S4 domain-containing protein [Lactobacillus jensenii
115-3-CHN]
gi|297205816|ref|ZP_06923211.1| cell-division protein [Lactobacillus jensenii JV-V16]
gi|256615998|gb|EEU21186.1| photosystem II S4 domain-containing protein [Lactobacillus jensenii
27-2-CHN]
gi|260548087|gb|EEX24063.1| photosystem II S4 domain-containing protein [Lactobacillus jensenii
115-3-CHN]
gi|297148942|gb|EFH29240.1| cell-division protein [Lactobacillus jensenii JV-V16]
Length = 274
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 94/182 (51%), Gaps = 7/182 (3%)
Query: 95 REVLHSDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLSVGHPEALTSDPDI- 151
+E + ++FL P + L++LA Q GGY +AE+CR + + +
Sbjct: 41 KEEILTNFLDPG----ARANLKELAQDDFYVQEFGGYDRAEKCRAIIRNDWEYQDVRNFQ 96
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
+ ++IT N F +H LG+++G+G+ +GDII G+ QF V +AD++
Sbjct: 97 LKLINITYNHKFATITHSQILGTLVGSGLNLSSLGDIITDGKGKWQFFVSEAMADFVCQE 156
Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYS 271
++++G V+VS + L + ++ K I SLR+DA+ +A K SR+ + LI
Sbjct: 157 IKRIGKVAVSLNEVSLKQIVNIEDDIQNTKIIVNSLRIDAILAALTKSSRNIVKQLIEKE 216
Query: 272 SL 273
++
Sbjct: 217 NI 218
>gi|254525647|ref|ZP_05137699.1| photosystem II S4 domain protein [Prochlorococcus marinus str. MIT
9202]
gi|221537071|gb|EEE39524.1| photosystem II S4 domain protein [Prochlorococcus marinus str. MIT
9202]
Length = 263
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 104/215 (48%), Gaps = 23/215 (10%)
Query: 69 LKGV-GDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQG 127
LKG+ + N +E + ++ +A A E + F + V +E + E L D K G
Sbjct: 4 LKGILINSNYKKETEELINIANLAYKHWETYWTGFNSTYVCEEILKDFENLNDFKFFIYG 63
Query: 128 GYPQAERCRLSVGHPEALTSDPDIVAA------LSITGNFGFQPCSHGDFLGSILGTGIA 181
G+ ++R +++ + + + D++ + + GNF F + DF ++ G+
Sbjct: 64 GFSSSQRSKIACFRRDNI-PEEDMLKSNFPAQGIKFYGNFLFDNATQDDFRSLLIENGVN 122
Query: 182 REKIGDIILQGEKGAQFLV-------VPELADYLITSLEKVGNVSVSCTRIPLLALEYEP 234
+ K+GDI G++GAQ ++ + E YL K+ V + IP
Sbjct: 123 KVKVGDIWTIGDRGAQGIIDNLDIENLDEKNFYLRDVKVKINLVGIDELLIP-------A 175
Query: 235 PRTKSF-KTIEASLRVDALASAGFKLSRSKLVNLI 268
RTK T+EAS R+DA+ASAGF++SR K++ I
Sbjct: 176 GRTKKLVNTVEASTRLDAIASAGFRISRKKIIERI 210
>gi|320530724|ref|ZP_08031768.1| S4 domain protein [Selenomonas artemidis F0399]
gi|320137011|gb|EFW28949.1| S4 domain protein [Selenomonas artemidis F0399]
Length = 264
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 79/143 (55%), Gaps = 2/143 (1%)
Query: 127 GGYPQAERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
GGY AER R + H + A T + ++ N F +H D LG+++G GI R +
Sbjct: 68 GGYAGAERQRAMLLHEDFAGTPGGYEIVCVTAAWNGQFAHLTHRDVLGALMGLGIDRGGV 127
Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
GDI+L G+ A+ L ++A +++ L +G V V+ T L + RTK + A
Sbjct: 128 GDILLAGDT-AKILCDTKMAQFIMEELTMIGAVRVTTTLGDLADIAPREERTKEIRATVA 186
Query: 246 SLRVDALASAGFKLSRSKLVNLI 268
SLR+DA+A+AGF +SRS+ + I
Sbjct: 187 SLRLDAIAAAGFGISRSRAADDI 209
>gi|302871852|ref|YP_003840488.1| RNA-binding S4 domain-containing protein [Caldicellulosiruptor
obsidiansis OB47]
gi|302574711|gb|ADL42502.1| RNA-binding S4 domain protein [Caldicellulosiruptor obsidiansis
OB47]
Length = 255
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 110/211 (52%), Gaps = 22/211 (10%)
Query: 74 DKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESM-MALEKLADVKAVAQGGYPQA 132
+K+ I ++K+++E R + +SDFL+P +K ++ L+K + GGY +
Sbjct: 8 NKHEILKIKNLIEKTRFG-----IEYSDFLSPFAIKYAVDFLLKKENQILYKIWGGYEGS 62
Query: 133 ERCRLSV------GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 186
ER L++ + E LT + + + F H LGS +G GI R+KIG
Sbjct: 63 ERNILALFSRDFEEYAENLTYPIETILIEAKDKLF------HRQVLGSFIGNGIKRDKIG 116
Query: 187 DIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE-- 244
DI+++ E A V E+A Y++T+++K+G V C+ + ++ + + K I
Sbjct: 117 DILVK-ENSALVFVKDEVATYIVTNIDKIGKEKVKCSIVRDNEVDIKYFFSNEGKRITYT 175
Query: 245 -ASLRVDALASAGFKLSRSKLVNLIRYSSLA 274
ASLRVD++ S GF +SR + +LIR +A
Sbjct: 176 LASLRVDSVISHGFGISREEAADLIRQMKVA 206
>gi|417810107|ref|ZP_12456787.1| ribosomal protein S4e [Lactobacillus salivarius GJ-24]
gi|335349979|gb|EGM51477.1| ribosomal protein S4e [Lactobacillus salivarius GJ-24]
Length = 262
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 80/170 (47%), Gaps = 4/170 (2%)
Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL-TSDPDI-VAALSITG 159
FL P + + K DVK GGY AER R ++ +P D D + + I
Sbjct: 38 FLNPREQYIAQSLIHKNQDVKVSFSGGYENAERKR-AIFYPSYYEVQDDDFNLELIMIKY 96
Query: 160 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 219
F HG LG++ +G+ RE IGDII Q + QFL E++DY +++VG +
Sbjct: 97 PVKFTSLIHGQILGTLANSGLDREVIGDIIEQNDTW-QFLCEKEVSDYFRLQIDRVGKIK 155
Query: 220 VSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIR 269
V PL + + +SLR+D+L S F +SR NLI+
Sbjct: 156 VRLEDTPLDEIVVPELNWQEKMVTSSSLRIDSLVSVTFNISRESSKNLIK 205
>gi|420155653|ref|ZP_14662511.1| hypothetical protein HMPREF1141_2201 [Clostridium sp. MSTE9]
gi|394758882|gb|EJF41718.1| hypothetical protein HMPREF1141_2201 [Clostridium sp. MSTE9]
Length = 253
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 112/225 (49%), Gaps = 19/225 (8%)
Query: 73 GDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQA 132
GD NAI E + +L+ R S R + + FL+ + L + + GG+ A
Sbjct: 7 GD-NAILEAR-LLDAVRLCSRRSQPVFVGFLSEAEAFSAQGVLRREGFFHYLFWGGFEGA 64
Query: 133 ERCRLSVGHPEALTSDPDIVAALSITGNFGFQPC---SHGDFLGSILGTGIAREKIGDII 189
ER P+ L +P+ ++T F+ C +H DFLG+++ GI R+ +GD++
Sbjct: 65 ERVMFGA-FPDYLEPEPESFPICAVTA--AFRDCDKLTHRDFLGALMALGITRDTVGDLL 121
Query: 190 LQGEKGAQFLVVPELADYLITSLEKVGNVSVSCT---RIPL-LALEYEPPRTKSFKTIEA 245
++ +G FL E+A Y+ T +EK+G V V T PL L +EP F T+ A
Sbjct: 122 IEPGRGVLFL-REEMAGYVQTQVEKIGRVGVRLTPGFTEPLPGGLGFEP-----FSTVIA 175
Query: 246 SLRVDALASAGFKLSRSKLVNLIRYSS-LASLVQISAKASAIRSS 289
S R+D + +A ++SR K L+ L VQI + ++A++
Sbjct: 176 SPRLDCVVAAALRISREKAARLVESGGVLLGGVQIMSVSAAVKDG 220
>gi|338813355|ref|ZP_08625484.1| RNA-binding S4 domain protein [Acetonema longum DSM 6540]
gi|337274714|gb|EGO63222.1| RNA-binding S4 domain protein [Acetonema longum DSM 6540]
Length = 263
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 103/186 (55%), Gaps = 9/186 (4%)
Query: 84 ILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
+L++A A ++ SDFL P + + + ++ + GGYP AER + + +
Sbjct: 23 LLDIAEAALRYQKYKISDFLDPFGISVAETIIAHYGRLRLASDGGYPGAERVKAAFVTND 82
Query: 144 ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF--LVV 201
+ + ++ L++ + + SH D LG++ G G+ RE IGDII G++ Q+ L+
Sbjct: 83 YMGTIDFGISVLAVQYDSRYYSLSHRDVLGALTGAGLKREVIGDII-PGDRQYQYQILID 141
Query: 202 PELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA---SLRVDALASAGFK 258
+L ++++ +L ++G V ++ LL L PR ++ K I A SLR+D++A+AGF
Sbjct: 142 AKLVEFVLRNLTQIGPAPV---QLSLLDLTEIVPREETLKEIRATVASLRLDSVAAAGFG 198
Query: 259 LSRSKL 264
SR+K+
Sbjct: 199 TSRTKM 204
>gi|399052164|ref|ZP_10741729.1| hypothetical protein PMI08_03282 [Brevibacillus sp. CF112]
gi|398050030|gb|EJL42420.1| hypothetical protein PMI08_03282 [Brevibacillus sp. CF112]
Length = 257
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 113/221 (51%), Gaps = 17/221 (7%)
Query: 72 VGDKNAIEE---VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGG 128
V D A EE V+ LEM ++ + +DF+ P ++ DVK A GG
Sbjct: 3 VFDHFAKEERPFVERALEMLTLVERKQAMRLTDFVDPRQWHIMKSLTSQVRDVKISASGG 62
Query: 129 YPQAERCRLSVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 186
Y AER R+ + HPE + +P+ +A L+I + F H D +G++L G+ REK G
Sbjct: 63 YEGAERVRVLI-HPEYIEVEPEDFRLALLAIKADQRFHTLEHRDVMGALLHAGMKREKFG 121
Query: 187 DIILQGEKGAQF-LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK-SFKTIE 244
D++ + G + +V E+AD++ T + ++ SV R+ + + PP T+ + KTI
Sbjct: 122 DMLT--DVGTCYAIVAEEVADFVCTQVTQIHRTSVQFERVAWES--FTPPATRFAEKTIT 177
Query: 245 A-SLRVDALASAGFKLSRSKLVNLIRYSSLASLVQISAKAS 284
S R+DA+ +SR+K + IR A V+++ K +
Sbjct: 178 VPSPRIDAVIGEVHNMSRAKALVPIR----AGKVKVNWKVT 214
>gi|366086111|ref|ZP_09452596.1| RNA-binding S4 domain-containing protein [Lactobacillus zeae KCTC
3804]
Length = 259
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 97/198 (48%), Gaps = 18/198 (9%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
+ H E+ A + + +DF P ++ +S+++ D+K + GGYP AER RL
Sbjct: 16 IDHFAELVETARTEYRAVLTDFTDPRQRLIADSLISAHD--DMKLMHFGGYPHAERQRL- 72
Query: 139 VGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
+ P+ + PD + L I F H G++L G+ R+ GDII G+
Sbjct: 73 IFAPDYYEAQPDDFDIRLLQIVYPEKFAEMHHSTIQGTLLNAGLDRDVFGDIITDGQTW- 131
Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLAL-----EYEPPRTKSFKTIEASLRVDA 251
QF V + D++++++ K+G V V T PL ++EP F ++LR+D
Sbjct: 132 QFFVAAHMEDWVMSNITKIGRVGVHFTDYPLDQAVTPENDWEPI---DFSI--SALRLDT 186
Query: 252 LASAGFKLSRSKLVNLIR 269
+ + GF +SR + LI+
Sbjct: 187 VVAHGFNMSRQRAKVLIQ 204
>gi|227512216|ref|ZP_03942265.1| ribosomal protein S4e [Lactobacillus buchneri ATCC 11577]
gi|227084610|gb|EEI19922.1| ribosomal protein S4e [Lactobacillus buchneri ATCC 11577]
Length = 264
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 82/171 (47%), Gaps = 4/171 (2%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 157
++FL P L + + + GGY AE R ++ +PE T D + A I
Sbjct: 38 TEFLNPRQLYILESIINRHDGIHFSTYGGYSGAELQR-AIVYPEYFTPKTDDFRITAFEI 96
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
F +HG LGS++G GI R +GDII G K QF+V E+ADY+ ++ +G
Sbjct: 97 DYPSKFATLAHGKILGSLMGVGIERNVVGDIITDGLK-WQFMVQSEMADYVKAQVDHIGK 155
Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+ V I + +++ +SLRVDAL S GF +SR L+
Sbjct: 156 IKVKLEDISPEGVIAPVDESETLTITVSSLRVDALISDGFHISRHHAKELV 206
>gi|417788480|ref|ZP_12436163.1| hypothetical protein, contains S4-like RNA binding domain
[Lactobacillus salivarius NIAS840]
gi|334308657|gb|EGL99643.1| hypothetical protein, contains S4-like RNA binding domain
[Lactobacillus salivarius NIAS840]
Length = 262
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 81/170 (47%), Gaps = 4/170 (2%)
Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL-TSDPDI-VAALSITG 159
FL P + + K DVK GGY AER R ++ +P D D + + I
Sbjct: 38 FLNPREQYIAQSLIHKNQDVKVSFSGGYENAERKR-AIFYPSYYEVQDDDFNLELIMIKY 96
Query: 160 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 219
F +HG LG++ +G+ RE IGDII + + QFL E++DY +++VG +
Sbjct: 97 PVKFTSLTHGQILGTLANSGLDREVIGDIIERNDTW-QFLCEKEVSDYFRLQIDRVGKIK 155
Query: 220 VSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIR 269
V PL + + +SLR+D+L S F +SR NLI+
Sbjct: 156 VRLEDAPLDEIVVPELNWQEKMVTSSSLRIDSLVSVTFNISRESSKNLIK 205
>gi|418010737|ref|ZP_12650508.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
Lc-10]
gi|410553316|gb|EKQ27319.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
Lc-10]
Length = 259
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 98/197 (49%), Gaps = 16/197 (8%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRL- 137
+ H E+ A + + +DF P ++ S+++ + D+K V GGYPQAER R+
Sbjct: 16 IDHFAELIETARTEYRPVLTDFTDPRQRLIATSLVSADD--DIKLVHFGGYPQAERQRII 73
Query: 138 -SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
+ + A +D DI L I F H G++L G+ R+ GDII G+
Sbjct: 74 FAPSYFSATAADFDI-RLLQIIYPEKFAELHHSTVQGTLLNAGLDRDVFGDIITDGDIW- 131
Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK----SFKTIEASLRVDAL 252
QF V + D++ ++++K+G V V T PL +Y P +F ++LR+D +
Sbjct: 132 QFFVAAHMQDWVTSNVDKIGRVGVHFTEHPL--ADYVTPENDWEPLNFSV--SALRLDTV 187
Query: 253 ASAGFKLSRSKLVNLIR 269
+ GF +SR + LI+
Sbjct: 188 VAHGFNISRQRAKTLIQ 204
>gi|312135163|ref|YP_004002501.1| RNA-binding S4 domain-containing protein [Caldicellulosiruptor
owensensis OL]
gi|311775214|gb|ADQ04701.1| RNA-binding S4 domain protein [Caldicellulosiruptor owensensis OL]
Length = 260
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 105/205 (51%), Gaps = 10/205 (4%)
Query: 74 DKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESM-MALEKLADVKAVAQGGYPQA 132
+K+ I +VK+++E R + +SDFL+P +K ++ L+K + GGY +
Sbjct: 13 NKHEILKVKNLIEKIRWG-----IEYSDFLSPFAIKYAVDFLLKKENQILYKIWGGYEGS 67
Query: 133 ERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQG 192
ER L++ + ++ + H LGS +G GI R+KIGDI+++
Sbjct: 68 ERNILALFSRDFEEYAENLTYPIKTILIEAKDKLFHRQVLGSFIGNGIKRDKIGDILVK- 126
Query: 193 EKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRV 249
E A V E+A Y++T+++K+G V C+ + ++ + + K I ASLR
Sbjct: 127 ENSALVFVKDEVATYIVTNIDKIGKEKVKCSIVRDNEVDIKYFFSNEGKRITYTVASLRA 186
Query: 250 DALASAGFKLSRSKLVNLIRYSSLA 274
D++ S GF +SR + +LIR +A
Sbjct: 187 DSVISHGFGISREEAADLIRQMKVA 211
>gi|452974556|gb|EME74376.1| RNA-binding protein YlmH [Bacillus sonorensis L12]
Length = 258
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 108/207 (52%), Gaps = 12/207 (5%)
Query: 81 VKHILEMARRASSRREVLHSDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
+ +LE + + + + +DFL P V+ S++ + +VK GG+ +AER R +
Sbjct: 16 IDQVLEWKQIVADQYRMKLTDFLDPREQVILNSLVG--QPDEVKLGFFGGFSEAERKR-A 72
Query: 139 VGHPE-ALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
+ +PE A S D + A + F H + LGS++G G+ R+K GD+I G
Sbjct: 73 ILYPEYAEPSAEDFQLQAYEVLYPQKFASIEHRELLGSLMGIGLKRQKFGDLIYAG-GIW 131
Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
QF+ E+AD++ + L ++G V VS +IPL L+ + +SLR+D++ SA
Sbjct: 132 QFVCSEEVADFVFSQLGQIGKVKVSLEKIPLSKLKVPEQDVEIMDDTVSSLRLDSVCSAV 191
Query: 257 FKLSRSKLVNLIRYSSLASLVQISAKA 283
+LSR K L++ LV+++ K
Sbjct: 192 SRLSRQKAQALVK----NGLVKVNWKV 214
>gi|365157067|ref|ZP_09353348.1| hypothetical protein HMPREF1015_00758 [Bacillus smithii 7_3_47FAA]
gi|363625801|gb|EHL76812.1| hypothetical protein HMPREF1015_00758 [Bacillus smithii 7_3_47FAA]
Length = 258
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 99/207 (47%), Gaps = 8/207 (3%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
E + +LE R+ + DFL P + L K +V GG QAER R
Sbjct: 14 EFIDDVLESIRQVEEKYAPKLMDFLDPREQQILSSLLGKNTEVNVSFFGGTVQAERKRAL 73
Query: 139 VGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
+ P D VA I F +H D LGS++G G+ REK GD IL E Q
Sbjct: 74 LYPPYFSVQQEDFQVALFEILYPQKFVVLNHRDVLGSLMGLGLRREKFGD-ILAKEGRFQ 132
Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPL-LALEYEPPRTKSFKTIEASLRVDALASAG 256
FLV E+AD++ + +VG SV L A+E E + +T +SLR+D + SA
Sbjct: 133 FLVAAEMADFVKLNFRQVGKASVQLEEKKLEEAIESEES-WQPVQTTVSSLRLDVMISAY 191
Query: 257 FKLSRSKLVNLIRYSSLASLVQISAKA 283
KLSR K+ +I+ + LV+++ K
Sbjct: 192 AKLSRQKVQTMIK----SGLVKVNWKV 214
>gi|418961536|ref|ZP_13513422.1| RNA binding protein [Lactobacillus salivarius SMXD51]
gi|380344068|gb|EIA32415.1| RNA binding protein [Lactobacillus salivarius SMXD51]
Length = 262
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 80/170 (47%), Gaps = 4/170 (2%)
Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL-TSDPDI-VAALSITG 159
FL P + + K DVK GGY ER R ++ +P D D + + I
Sbjct: 38 FLNPREQYIAQSLIHKNQDVKVSFSGGYENTERKR-AIFYPSYYEVQDDDFNLELIMIKY 96
Query: 160 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 219
F +HG LG++ +G+ RE IGDII Q + QFL E++DY +++VG +
Sbjct: 97 PAKFTSLTHGQILGTLANSGLDREVIGDIIEQNDTW-QFLCEKEVSDYFRLQIDRVGKIK 155
Query: 220 VSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIR 269
V PL + + +SLR+D+L S F +SR NLI+
Sbjct: 156 VRLEDAPLDEIVVPELNWQEKMVTSSSLRIDSLVSVTFNISRESSKNLIK 205
>gi|346306279|ref|ZP_08848437.1| hypothetical protein HMPREF9457_00146 [Dorea formicigenerans
4_6_53AFAA]
gi|345900084|gb|EGX69912.1| hypothetical protein HMPREF9457_00146 [Dorea formicigenerans
4_6_53AFAA]
Length = 251
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 6/190 (3%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
K ++E++ A SR V SDFL L + + GGY AER ++
Sbjct: 10 KRLIELSNLAFSRDIVTFSDFLNLNELNILHRTPKDQFKARFETYGGYELAER-QMVAFL 68
Query: 142 PEALTSDPDI-VAALSIT-GNFGF-QPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
P+AL D + AL I N F + +H D+LG+I+ G +R KIGDII Q + GA
Sbjct: 69 PDALYYDYGYPMQALKICPVNKRFAEDLTHRDYLGAIMNLGTSRTKIGDII-QTDDGAIV 127
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
V E++DY++ +L ++ + +++ R L + YE + K S+R+D + S +
Sbjct: 128 FVKEEISDYIMKNLTRIRHTTITVERRELSDISYE-SHFEELKGTVPSVRLDTVLSVAYP 186
Query: 259 LSRSKLVNLI 268
LSRSKL I
Sbjct: 187 LSRSKLTTYI 196
>gi|260438388|ref|ZP_05792204.1| S4 domain protein [Butyrivibrio crossotus DSM 2876]
gi|292808974|gb|EFF68179.1| S4 domain protein [Butyrivibrio crossotus DSM 2876]
Length = 250
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 96/190 (50%), Gaps = 13/190 (6%)
Query: 85 LEMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSVGHP 142
+E A R +DFL + K+++ + +L V+ GGY AER +
Sbjct: 13 MEAADNCYYRNVPTSTDFL--DIYKQNLFNTVIRELPPVQYRFDGGYELAERKVIMFLPQ 70
Query: 143 EALTSDPDIVAALSITGNFGF-QPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVV 201
++ SD + N F + +H D+LGSI+G GI R+K+GDI+L + A +
Sbjct: 71 DSEISDLPFLTLKVTPRNLHFTEKLNHRDYLGSIMGLGIKRDKVGDILLY-DNFAYIFCM 129
Query: 202 PELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVDALASAGFK 258
+A+YL +L K+ N V+ T I YEP S++ I+ ASLR+DA+ + GF
Sbjct: 130 KSIAEYLTDNLLKIRNTYVTVTEISNEEFIYEP----SYEVIKGSVASLRLDAVIALGFN 185
Query: 259 LSRSKLVNLI 268
SRS + + I
Sbjct: 186 GSRSHITSYI 195
>gi|295398667|ref|ZP_06808691.1| S4 domain-containing protein YlmH [Aerococcus viridans ATCC 11563]
gi|294973102|gb|EFG48905.1| S4 domain-containing protein YlmH [Aerococcus viridans ATCC 11563]
Length = 263
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 86/172 (50%), Gaps = 9/172 (5%)
Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAE--RCRLSVGHPEALTSDPDIVAALSITG 159
FL P + M + + ++ GGYP AE RC L+ + E +D +I I
Sbjct: 39 FLNPREVAIVSMIIGQDDEIHYEFFGGYPNAENQRCVLAPTYYEIQPADFEI-TPFDIHY 97
Query: 160 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 219
F H LG+ILG G+ R +IGDII GEK QF V ++AD+L ++K+G
Sbjct: 98 ASKFNTIEHRQILGTILGQGVERNRIGDIIQAGEKW-QFFVDEKIADFLSFEMDKIGGSK 156
Query: 220 VSCTRIPLLALEYEPPRTKSFKTIE---ASLRVDALASAGFKLSRSKLVNLI 268
V +I +P ++ +E +SLR D + S GF++ R+K +LI
Sbjct: 157 VRLVKIDHFDQISQP--KSDWQPMEITLSSLRFDTIISDGFRIPRAKAKSLI 206
>gi|335357085|ref|ZP_08548955.1| RNA binding protein [Lactobacillus animalis KCTC 3501]
Length = 260
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 90/170 (52%), Gaps = 6/170 (3%)
Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSITG 159
FL P + L+ +K A+GG+ QAER RL + +P+ + D + L I
Sbjct: 38 FLDPRQQHIAQFLLQADDMIKVKAEGGFAQAERKRL-LFYPDYYEPQEKDFELQLLEINY 96
Query: 160 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 219
F +HG LG++ +G+ RE +GDII ++ Q +V ++DYL+ +E++G ++
Sbjct: 97 PTKFVSLTHGQILGTLANSGLEREVLGDIITDSQRW-QIVVQKNISDYLLQQVERIGKIN 155
Query: 220 VSCTRIPLLALEYEPPRTKSFKTIEA-SLRVDALASAGFKLSRSKLVNLI 268
V +PL P +T+ A SLR+D + +A + +SR+++ LI
Sbjct: 156 VRLEEMPLTQ-RLVPNNDWELETVSASSLRIDTVIAAVYNISRNRVKELI 204
>gi|159903952|ref|YP_001551296.1| hypothetical protein P9211_14111 [Prochlorococcus marinus str. MIT
9211]
gi|159889128|gb|ABX09342.1| Conserved hypothetical protein [Prochlorococcus marinus str. MIT
9211]
Length = 262
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 101/207 (48%), Gaps = 7/207 (3%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
DL+K KNA E ++ ++ + +A + L S F+ +++E + + + ++ A
Sbjct: 7 DLIKR--SKNA-ETLERLISLGEKAHKTWQELWSPFVEAQLIEEILKIFDPIHEINCHAD 63
Query: 127 GGYPQAERCRL---SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIARE 183
GGY AER R+ E ++ + I GNF F DF ++ GI+
Sbjct: 64 GGYLGAERKRILFRRTHEGEKKIFPKPTLSGMQIEGNFLFDKTRIQDFKEALEEKGISPS 123
Query: 184 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT-KSFKT 242
+GDI + G++GAQ + E L + VS+ + + L R K T
Sbjct: 124 DLGDIWIVGDRGAQLICTREAGLLLNKQNGLIREVSIKYELLDINQLRLPSKRMPKKITT 183
Query: 243 IEASLRVDALASAGFKLSRSKLVNLIR 269
IEAS R+D+++SAGF LSR+K+V I+
Sbjct: 184 IEASTRLDSISSAGFGLSRAKIVTEIK 210
>gi|312127591|ref|YP_003992465.1| RNA-binding S4 domain-containing protein [Caldicellulosiruptor
hydrothermalis 108]
gi|311777610|gb|ADQ07096.1| RNA-binding S4 domain protein [Caldicellulosiruptor hydrothermalis
108]
Length = 260
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 103/200 (51%), Gaps = 18/200 (9%)
Query: 99 HSDFLTPPVLKESMMALEKLAD-VKAVAQGGYPQAERCRLSV------GHPEALTSDPDI 151
+SDFL+P +K ++ L K + + + GGY +ER L++ + E LT P
Sbjct: 33 YSDFLSPFAIKYAVEVLLKNQNHILHRSWGGYKGSERNILALFSSDFEEYAENLTY-PIQ 91
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
+ N SH LGS +G G+ R+KIGDI+++ E A V E+A Y++T+
Sbjct: 92 TILIEAKNNL-----SHRQILGSFIGNGLKRDKIGDILVK-ENSALVFVKDEIATYIVTN 145
Query: 212 LEKVGNVSVSCTRIPLLALE---YEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
++K+G V C+ + ++ + +K ASLRVD++ S GF +SR +LI
Sbjct: 146 IDKIGKEKVKCSLVENNQIDIKWFISDNSKRVVYTVASLRVDSVISHGFGISREAAADLI 205
Query: 269 RYSSLA-SLVQISAKASAIR 287
+ +A + V I + A++
Sbjct: 206 KQMKVAVNWVYIDKPSYAVK 225
>gi|417998984|ref|ZP_12639197.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
T71499]
gi|410539924|gb|EKQ14446.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
T71499]
Length = 259
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 97/197 (49%), Gaps = 16/197 (8%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRL- 137
+ H E+ A + + +DF P ++ S+++ + D+K V GGYP AER R+
Sbjct: 16 IDHFAELIETARTEYRPVLTDFTDPRQRLIATSLVSADD--DIKLVHFGGYPHAERQRII 73
Query: 138 -SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
+ G+ A D DI L I F H G++L G+ R+ GDII G+
Sbjct: 74 FAPGYFSATAVDFDI-RLLQIIYPEKFAELHHSTVQGTLLNAGLDRDVFGDIITDGDIW- 131
Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK----SFKTIEASLRVDAL 252
QF V + D++ ++++K+G V V T PL +Y P +F ++LR+D +
Sbjct: 132 QFFVAAHMQDWVTSNVDKIGRVGVHFTEHPL--ADYVTPENDWEPLNFSV--SALRLDTV 187
Query: 253 ASAGFKLSRSKLVNLIR 269
+ GF +SR + LI+
Sbjct: 188 VAHGFNISRQRAKTLIQ 204
>gi|418004991|ref|ZP_12644992.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
UW1]
gi|410548119|gb|EKQ22335.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
UW1]
Length = 259
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 97/198 (48%), Gaps = 18/198 (9%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERCRL 137
+ H E+ A + + +DF P ++ ++A+ ++ D+K V GGYP AER R+
Sbjct: 16 IDHFAELIETARTEYRPVLTDFTDP---RQRLIAISLVSADDDIKLVHFGGYPHAERQRI 72
Query: 138 SVG--HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
+ A +D DI L I F H G++L G+ R+ GDII G+
Sbjct: 73 IFAPSYFSATAADFDI-RLLQIIYPEKFAELHHSTVQGTLLNAGLDRDVFGDIITDGDIW 131
Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK----SFKTIEASLRVDA 251
QF V + D++ ++++K+G V V T PL +Y P +F ++LR+D
Sbjct: 132 -QFFVAAHMQDWVTSNVDKIGRVGVHFTEHPL--TDYVTPENDWEPLNFSV--SALRLDT 186
Query: 252 LASAGFKLSRSKLVNLIR 269
+ + GF +SR + LI+
Sbjct: 187 VVAHGFNISRQRAKTLIQ 204
>gi|309778070|ref|ZP_07673009.1| putative S4 domain protein [Erysipelotrichaceae bacterium 3_1_53]
gi|308914164|gb|EFP59965.1| putative S4 domain protein [Erysipelotrichaceae bacterium 3_1_53]
Length = 250
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 97/199 (48%), Gaps = 12/199 (6%)
Query: 77 AIEEVKHILEMARRASS---RREVLHSDFLTPPVLKESMMALEKLADVKAV--AQGGYPQ 131
AIE + E RR R E + +TP + + E+ + + QGGY Q
Sbjct: 4 AIEHYRGNEEFVRRLQDQIDRMERWNRIVVTPFFSPDQIQIAERFCGHRILYRKQGGYAQ 63
Query: 132 AERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ 191
AERCRL+ E P + +I+ +FG +H D LG+++ GI REK GD+I+
Sbjct: 64 AERCRLAFLPWEEDVDIPILHVKANISSSFG--QITHRDVLGALMHLGIEREKTGDLIVD 121
Query: 192 GEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT-IEASLRVD 250
+ V P++ +YL +L K+ + + + YEP ++KT I +SLR+D
Sbjct: 122 -QNTVHMFVDPDIGNYLCANLTKIRRCKIQLEESDEV-ISYEPD--IAYKTLIVSSLRLD 177
Query: 251 ALASAGFKLSRSKLVNLIR 269
L SA +SR+K IR
Sbjct: 178 TLVSALSNMSRAKAAACIR 196
>gi|347750593|ref|YP_004858158.1| RNA-binding S4 domain-containing protein [Bacillus coagulans 36D1]
gi|347583111|gb|AEO99377.1| RNA-binding S4 domain protein [Bacillus coagulans 36D1]
Length = 258
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 92/186 (49%), Gaps = 8/186 (4%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 157
+DFL P + + + V A GGY ++ER R+ + P+ + D D +A +
Sbjct: 35 TDFLDPRMQRIVNTVIGNHGAVSVRAFGGYRESERKRMLL-FPDYFSPDEDDFHLALFEV 93
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
F H LGS++ G+ REK GDI++ GE QF V EL+D++ ++G
Sbjct: 94 HYPAKFVSFEHKHVLGSLMALGLKREKFGDILI-GEGRIQFFVAAELSDFIQMEFRQIGK 152
Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSLASLV 277
V+ T++ L + R + +SLR+DA+ SA + +SR K LI + LV
Sbjct: 153 TPVTLTKMQLGEAIGQQQRWLEKQATVSSLRLDAILSAVYNISRQKTRALIEH----GLV 208
Query: 278 QISAKA 283
+++ K
Sbjct: 209 KVNWKT 214
>gi|306832984|ref|ZP_07466116.1| S4 domain-containing protein YlmH [Streptococcus bovis ATCC 700338]
gi|304424883|gb|EFM28017.1| S4 domain-containing protein YlmH [Streptococcus bovis ATCC 700338]
Length = 263
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 104/218 (47%), Gaps = 11/218 (5%)
Query: 73 GDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQA 132
G+ + IE++ ++ARR + + +DFL P + + + V+ YP A
Sbjct: 14 GEYDFIEKID---DLARRVEATYAYVLTDFLNPRQVDIARSVIGNRGLHYFVSSDYYP-A 69
Query: 133 ERCRLSVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSIL-GTGIAREKIGDII 189
E RL V P+ +P+ + L + N F +H +G++L GI R IGDI+
Sbjct: 70 EYARLIVA-PDYYEFNPEDFELTLLEVNYNSKFNQLTHSQIMGTLLHKLGIKRTVIGDIL 128
Query: 190 LQGEKG-AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLR 248
+ E G AQ LV +ADY + K+ SVS IPL L ++ I +S+R
Sbjct: 129 V--ESGYAQLLVTQNMADYFRADVTKIAKASVSLKEIPLEQLIAGEKDSRQLDIIVSSMR 186
Query: 249 VDALASAGFKLSRSKLVNLIRYSSLASLVQISAKASAI 286
+D + + KLSRS+ V LI + QI +AS +
Sbjct: 187 MDKVLATVLKLSRSQAVQLIETDKVKLNYQIVDRASEM 224
>gi|295109996|emb|CBL23949.1| Uncharacterized conserved protein, contains S4-like domain
[Ruminococcus obeum A2-162]
Length = 250
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 102/198 (51%), Gaps = 20/198 (10%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAV---AQGGYPQAERCRL 137
+K I E+A + R V SDFL L E + E+ + V GGY QAER ++
Sbjct: 8 IKRIRELANLSYQRDIVTFSDFLN---LNEQNIVNEQKNQMPGVIIECSGGYEQAER-QM 63
Query: 138 SVGHPEALTSDPDI-VAALSI---TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGE 193
HP+AL + + L I F + +H DFLG++L GI R IGDI++Q E
Sbjct: 64 VAFHPDALLFPWEYPITCLKIEPLAAKFS-ESLTHRDFLGAVLNLGIERSVIGDILVQ-E 121
Query: 194 KGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVD 250
A ++ADY+I +L +V + ++ +++ E+ P T F+TI AS+R+D
Sbjct: 122 HTAWIFCHNKIADYIIENLTRVRHTAMKISKVD--NPEHFP--TPHFETISGTCASVRLD 177
Query: 251 ALASAGFKLSRSKLVNLI 268
L F+ SRS +V+ I
Sbjct: 178 TLIGLAFQSSRSSMVSFI 195
>gi|402303250|ref|ZP_10822346.1| S4 domain protein [Selenomonas sp. FOBRC9]
gi|400378880|gb|EJP31730.1| S4 domain protein [Selenomonas sp. FOBRC9]
Length = 264
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 77/145 (53%), Gaps = 4/145 (2%)
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDIVAALSITG--NFGFQPCSHGDFLGSILGTGIARE 183
GGY AER R + H E P + +T N F +H D LG+++G GI R
Sbjct: 67 DGGYAGAERQRAMLLH-EDFAGTPGGCEIVCVTAAWNGQFAHLTHRDVLGALMGLGIDRG 125
Query: 184 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTI 243
+GDI+L G+ A+ L ++A +++ L +G V V+ L + RTK +
Sbjct: 126 GVGDILLAGDT-AKILCDTKMAHFIMEELTMIGAVRVTTALGDLADIAPREERTKEIRAT 184
Query: 244 EASLRVDALASAGFKLSRSKLVNLI 268
ASLR+DA+A+AGF +SRS+ + I
Sbjct: 185 VASLRLDAIAAAGFGISRSRAADDI 209
>gi|401565106|ref|ZP_10805961.1| S4 domain protein [Selenomonas sp. FOBRC6]
gi|400188139|gb|EJO22313.1| S4 domain protein [Selenomonas sp. FOBRC6]
Length = 264
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 77/145 (53%), Gaps = 4/145 (2%)
Query: 126 QGGYPQAERCRLSVGHPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIARE 183
GGY AER R + H + PD +A + + N F +H D LG+++G GI RE
Sbjct: 67 DGGYTGAERQRAMLRHQD-FRGTPDGFAIACVEASWNGQFARLTHRDVLGAVMGLGIERE 125
Query: 184 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTI 243
IGDI L A+ + ++AD+++++L +G V L + RTK +
Sbjct: 126 LIGDI-LPAPDTAKIICDAKIADFIVSNLTMIGAVGAKAALSNLEEIAPREERTKEIRAT 184
Query: 244 EASLRVDALASAGFKLSRSKLVNLI 268
ASLR+D++ +AGF +SRS+ + I
Sbjct: 185 VASLRLDSIVAAGFGISRSRAADDI 209
>gi|300814713|ref|ZP_07094963.1| S4 domain protein [Peptoniphilus sp. oral taxon 836 str. F0141]
gi|300511186|gb|EFK38436.1| S4 domain protein [Peptoniphilus sp. oral taxon 836 str. F0141]
Length = 258
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 106/211 (50%), Gaps = 12/211 (5%)
Query: 61 VKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLAD 120
VK N ++LL + + + + ++K +L+ A SDFL P L + L L D
Sbjct: 2 VKLNKENLLNNINNSDDLYQLKKVLDKAFVVLKSYIDNSSDFLNPHELSLAKSILNSL-D 60
Query: 121 VKAVAQGGYPQAERCRLSVGHPEALTS-DPDIVAALSITGNFGFQPCSHGDFLGSILGTG 179
+ GGY E +++ +P L + + A+ G + H D LGS++G G
Sbjct: 61 IGYSFDGGYDDYEYGVVNM-YPSFLHGPKSESICAMKFPTIVGIK---HKDVLGSLIGLG 116
Query: 180 IAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVS-CTRIPLLALEYEPPRTK 238
I R KIGDI++ G++ F V E+ D+++ +LEK+ N +V C + L P +
Sbjct: 117 IDRRKIGDILI-GKEFTYFFVKIEIKDFILYNLEKISNYNVKVCLKESTDVL---PIKEY 172
Query: 239 SFKTI-EASLRVDALASAGFKLSRSKLVNLI 268
+K I +SLR+D S LSRSK+ ++I
Sbjct: 173 FYKDIVTSSLRLDTFLSQALNLSRSKINDII 203
>gi|332708244|ref|ZP_08428226.1| hypothetical protein LYNGBM3L_16620 [Moorea producens 3L]
gi|332352968|gb|EGJ32526.1| hypothetical protein LYNGBM3L_16620 [Moorea producens 3L]
Length = 219
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 69/127 (54%), Gaps = 5/127 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLK V ++ E+V +++ A +A EV+ +DFL+PPVL E ++L +V+ +A
Sbjct: 5 EELLKSVENR---EDVARVIDQADQAIKTWEVVLTDFLSPPVLVEVAQQFQRLTEVQLLA 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGI-ARE 183
GGYPQAER RL + E + V L I GNF F + FLG G I ARE
Sbjct: 62 WGGYPQAERQRLGIAREELPLDQSQVEVVGLDIAGNFLFDTATPPGFLGRNSGNWIGARE 121
Query: 184 KIGDIIL 190
G L
Sbjct: 122 DWGHYCL 128
>gi|313901208|ref|ZP_07834696.1| S4 domain protein [Clostridium sp. HGF2]
gi|346314197|ref|ZP_08855718.1| hypothetical protein HMPREF9022_01375 [Erysipelotrichaceae
bacterium 2_2_44A]
gi|373121511|ref|ZP_09535379.1| hypothetical protein HMPREF0982_00308 [Erysipelotrichaceae
bacterium 21_3]
gi|422327527|ref|ZP_16408554.1| hypothetical protein HMPREF0981_01874 [Erysipelotrichaceae
bacterium 6_1_45]
gi|312954166|gb|EFR35846.1| S4 domain protein [Clostridium sp. HGF2]
gi|345906555|gb|EGX76279.1| hypothetical protein HMPREF9022_01375 [Erysipelotrichaceae
bacterium 2_2_44A]
gi|371663367|gb|EHO28557.1| hypothetical protein HMPREF0981_01874 [Erysipelotrichaceae
bacterium 6_1_45]
gi|371665529|gb|EHO30694.1| hypothetical protein HMPREF0982_00308 [Erysipelotrichaceae
bacterium 21_3]
Length = 250
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 101/199 (50%), Gaps = 12/199 (6%)
Query: 77 AIEEVKHILEMARRASS---RREVLHSDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQ 131
AIE + E RR R E + +TP + + E+ + + + GGY Q
Sbjct: 4 AIEHYRGNEEFVRRLQDQIDRMERWNRVVVTPFFSPDQIQIAERFCGHRILYRKDGGYAQ 63
Query: 132 AERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ 191
AERCRL+ E P V L ++ F +H D LG+++ GI R+K GD+I++
Sbjct: 64 AERCRLAFLPWEEEVQIP--VLHLKAKISYSFGKLAHRDVLGALMNLGIERDKTGDLIVE 121
Query: 192 GEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT-IEASLRVD 250
+ V P++ +YLI +L ++ +V ++ YEP ++K+ I +SLR+D
Sbjct: 122 -QDAVHMFVDPDIGNYLIANLTQIKRCAVHLEPSE-ESVSYEP--DIAYKSLIVSSLRLD 177
Query: 251 ALASAGFKLSRSKLVNLIR 269
L +A +LSR+K +LIR
Sbjct: 178 TLVAALARLSRAKAADLIR 196
>gi|191638281|ref|YP_001987447.1| RNA-binding protein [Lactobacillus casei BL23]
gi|385819986|ref|YP_005856373.1| Photosystem II S4 domain-containing protein [Lactobacillus casei
LC2W]
gi|385823181|ref|YP_005859523.1| Photosystem II S4 domain-containing protein [Lactobacillus casei
BD-II]
gi|409997144|ref|YP_006751545.1| RNA-binding protein ylmH [Lactobacillus casei W56]
gi|190712583|emb|CAQ66589.1| YlmH (RNA-binding protein) [Lactobacillus casei BL23]
gi|327382313|gb|AEA53789.1| Photosystem II S4 domain-containing protein [Lactobacillus casei
LC2W]
gi|327385508|gb|AEA56982.1| Photosystem II S4 domain-containing protein [Lactobacillus casei
BD-II]
gi|406358156|emb|CCK22426.1| Putative RNA-binding protein ylmH [Lactobacillus casei W56]
Length = 259
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 98/197 (49%), Gaps = 16/197 (8%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRL- 137
+ H E+ A + + +DF P ++ S+++ + D+K V GGYP+AER R+
Sbjct: 16 IDHFAELIETARTEYRPVLTDFTDPRQRLIATSLVSADD--DIKLVHFGGYPRAERQRII 73
Query: 138 -SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
+ + A +D DI L I F H G++L G+ R+ GDII G+
Sbjct: 74 FAPNYFSATAADFDI-RLLQIIYPEKFAELHHSTVQGTLLNAGLDRDVFGDIITDGDIW- 131
Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK----SFKTIEASLRVDAL 252
QF V + D++ ++++K+G V V T PL +Y P +F ++LR+D +
Sbjct: 132 QFFVAAHMQDWVTSNVDKIGRVGVHFTEHPL--ADYVTPENDWEPLNFSV--SALRLDTV 187
Query: 253 ASAGFKLSRSKLVNLIR 269
+ GF +SR + LI+
Sbjct: 188 VAHGFNISRQRAKTLIQ 204
>gi|418007881|ref|ZP_12647753.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
UW4]
gi|410547966|gb|EKQ22187.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
UW4]
Length = 259
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 97/197 (49%), Gaps = 16/197 (8%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRL- 137
+ H E+ A + + +DF P ++ S+++ + D+K V GGYP AER R+
Sbjct: 16 IDHFAELIETARTEYRPVLTDFTDPRQRLIATSLVSADD--DIKIVHFGGYPHAERQRII 73
Query: 138 -SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
+ + A +D DI L I F H G++L G+ R+ GDII G+
Sbjct: 74 FAPSYFSATAADFDI-RLLQIIYPEKFAELHHSTVQGTLLNAGLDRDVFGDIITDGDIW- 131
Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK----SFKTIEASLRVDAL 252
QF V + D++ ++++K+G V V T PL +Y P +F ++LR+D +
Sbjct: 132 QFFVAAHMQDWVTSNVDKIGRVGVHFTEHPL--ADYVTPENDWEPLNFSV--SALRLDTV 187
Query: 253 ASAGFKLSRSKLVNLIR 269
+ GF +SR + LI+
Sbjct: 188 VAHGFNISRQRAKTLIQ 204
>gi|282882016|ref|ZP_06290657.1| RNA-binding S4 domain-containing protein [Peptoniphilus lacrimalis
315-B]
gi|281298046|gb|EFA90501.1| RNA-binding S4 domain-containing protein [Peptoniphilus lacrimalis
315-B]
Length = 258
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 106/210 (50%), Gaps = 10/210 (4%)
Query: 61 VKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLAD 120
VK N ++LL + + + + ++K +L+ A SDFL P L + L L D
Sbjct: 2 VKLNKENLLNNINNSDDLYQLKKVLDKAFVVLKSYVDNSSDFLNPHELSLAKSILNSL-D 60
Query: 121 VKAVAQGGYPQAERCRLSVGHPEALTS-DPDIVAALSITGNFGFQPCSHGDFLGSILGTG 179
+ GGY E +++ +P L + + A+ G + H D LGS++G G
Sbjct: 61 IGYSFDGGYDDYEYGVVNM-YPSFLHGPKSESICAMKFPTIVGIK---HKDVLGSLIGLG 116
Query: 180 IAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKS 239
I R KIGDI++ G++ F V E+ D+++ +LEK+ N +V + + + P +
Sbjct: 117 IDRRKIGDILI-GKEFTYFFVKIEIKDFILYNLEKISNYNVKVSLKE--STDVLPIKEYF 173
Query: 240 FKTI-EASLRVDALASAGFKLSRSKLVNLI 268
+K I +SLR+D S LSRSK+ ++I
Sbjct: 174 YKDIVTSSLRLDTFLSQALNLSRSKINDII 203
>gi|116494769|ref|YP_806503.1| cell division protein [Lactobacillus casei ATCC 334]
gi|417983352|ref|ZP_12623990.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
21/1]
gi|417992792|ref|ZP_12633144.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
CRF28]
gi|417996141|ref|ZP_12636424.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
M36]
gi|418001912|ref|ZP_12642040.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
UCD174]
gi|418014870|ref|ZP_12654459.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
Lpc-37]
gi|116104919|gb|ABJ70061.1| Cell division protein, S4-like domain [Lactobacillus casei ATCC
334]
gi|410528298|gb|EKQ03151.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
21/1]
gi|410532583|gb|EKQ07285.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
CRF28]
gi|410535850|gb|EKQ10460.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
M36]
gi|410545357|gb|EKQ19657.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
UCD174]
gi|410552692|gb|EKQ26707.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
Lpc-37]
Length = 259
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 97/197 (49%), Gaps = 16/197 (8%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRL- 137
+ H E+ A + + +DF P ++ S+++ + D+K V GGYP AER R+
Sbjct: 16 IDHFAELIETARTEYRPVLTDFTDPRQRLIATSLVSADD--DIKLVHFGGYPHAERQRII 73
Query: 138 -SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
+ + A +D DI L I F H G++L G+ R+ GDII G+
Sbjct: 74 FAPSYFSATAADFDI-RLLQIIYPEKFAELHHSTVQGTLLNAGLDRDVFGDIITDGDIW- 131
Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK----SFKTIEASLRVDAL 252
QF V + D++ ++++K+G V V T PL +Y P +F ++LR+D +
Sbjct: 132 QFFVAAHMQDWVTSNVDKIGRVGVHFTEHPL--ADYVTPENDWEPLNFSV--SALRLDTV 187
Query: 253 ASAGFKLSRSKLVNLIR 269
+ GF +SR + LI+
Sbjct: 188 VAHGFNISRQRAKTLIQ 204
>gi|417986647|ref|ZP_12627214.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
32G]
gi|410525233|gb|EKQ00137.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
32G]
Length = 249
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 97/197 (49%), Gaps = 16/197 (8%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRL- 137
+ H E+ A + + +DF P ++ S+++ + D+K V GGYP AER R+
Sbjct: 16 IDHFAELIETARTEYRPVLTDFTDPRQRLIATSLVSADD--DIKLVHFGGYPHAERQRII 73
Query: 138 -SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
+ + A +D DI L I F H G++L G+ R+ GDII G+
Sbjct: 74 FAPSYFSATAADFDI-RLLQIIYPEKFAELHHSTVQGTLLNAGLDRDVFGDIITDGDIW- 131
Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK----SFKTIEASLRVDAL 252
QF V + D++ ++++K+G V V T PL +Y P +F ++LR+D +
Sbjct: 132 QFFVAAHMQDWVTSNVDKIGRVGVHFTEHPL--ADYVTPENDWEPLNFSV--SALRLDTV 187
Query: 253 ASAGFKLSRSKLVNLIR 269
+ GF +SR + LI+
Sbjct: 188 VAHGFNISRQRAKTLIQ 204
>gi|375089438|ref|ZP_09735764.1| hypothetical protein HMPREF9708_00154 [Facklamia languida CCUG
37842]
gi|374566836|gb|EHR38070.1| hypothetical protein HMPREF9708_00154 [Facklamia languida CCUG
37842]
Length = 260
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 89/187 (47%), Gaps = 8/187 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPP---VLKESMMALEKLADVKAVAQGGYPQAERCRL 137
V + + +ASS + + FLTP ++K+ + E D++ GGYP AER R
Sbjct: 17 VDQVFDWLTQASSLYSPVLTPFLTPREGLIVKQIVNGYE---DLQVELTGGYPSAERQRA 73
Query: 138 SVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
+ D +A + I F +H LGS++ TGI R+++GDI+ G+
Sbjct: 74 LIYPLYYQVQLEDFSLAYMQIHYPHKFGELTHQQILGSVMATGIKRDRLGDIMTDGQT-W 132
Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
Q +V LA YLI L K+G + V +I L + I SLRVD++ S
Sbjct: 133 QIIVDTHLATYLINHLSKIGRMGVQVKQINPEELVDSVEEWEDLPLITGSLRVDSVVSKV 192
Query: 257 FKLSRSK 263
+ LSR +
Sbjct: 193 YNLSRQR 199
>gi|227535234|ref|ZP_03965283.1| ribosomal protein S4e [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|227187118|gb|EEI67185.1| ribosomal protein S4e [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
Length = 259
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 96/197 (48%), Gaps = 16/197 (8%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
+ H E+ A + + +DF P ++ S+++ + D+K V GGYP AER R+
Sbjct: 16 IDHFAELIETARTEYRPVLTDFTDPRQRLIATSLVSADD--DIKLVHFGGYPHAERQRII 73
Query: 139 VG--HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
+ A +D DI L I F H G++L G+ R+ GDII G+
Sbjct: 74 FAPSYFSATAADFDI-RLLQIIYPEKFAELHHSTVQGTLLNAGLDRDVFGDIITDGDIW- 131
Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK----SFKTIEASLRVDAL 252
QF V + D++ ++++K+G V V T PL +Y P +F ++LR+D +
Sbjct: 132 QFFVAAHMQDWVTSNVDKIGRVGVHFTEHPL--ADYVTPENDWEPLNFSV--SALRLDTV 187
Query: 253 ASAGFKLSRSKLVNLIR 269
+ GF +SR + LI+
Sbjct: 188 VAHGFNISRQRAKTLIQ 204
>gi|342218196|ref|ZP_08710820.1| S4 domain protein [Megasphaera sp. UPII 135-E]
gi|341590796|gb|EGS34026.1| S4 domain protein [Megasphaera sp. UPII 135-E]
Length = 261
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 11/175 (6%)
Query: 100 SDFLTPPVLK--ESMMALEKLADVKAVAQGGYPQAERCRLSV---GHPEALTSDPDIVAA 154
S+F++P ++ E++ A EK+ ++ GGY AER RL+ + A+ D + A
Sbjct: 39 SEFVSPGAIQIGETICAHEKMLQLRVF--GGYEGAERVRLAFVDRTYEGAVQYD---IQA 93
Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 214
I + ++ SH D LGS++ GI R + GDI++Q E A L+ A + L K
Sbjct: 94 CHIGWDSRYRLLSHRDVLGSLMSMGIERSRFGDILMQ-ESDAIVLLDTVTAQCVCAELHK 152
Query: 215 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIR 269
+ V+V+ L + + + K KT ASLR+DA+ ++GF +SR+K I+
Sbjct: 153 IAMVTVTVEPYSLKDIVPKQEKVKEIKTTVASLRLDAITASGFGISRTKAAEAIK 207
>gi|417989538|ref|ZP_12630042.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
A2-362]
gi|410537925|gb|EKQ12487.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
A2-362]
Length = 259
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 96/197 (48%), Gaps = 16/197 (8%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRL- 137
+ H E+ A + + +DF P ++ S+++ + D+K V GGYP AER R+
Sbjct: 16 IDHFAELIETARTEYRPVLTDFTDPRQRLIATSLVSADD--DIKLVHFGGYPHAERQRII 73
Query: 138 -SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
+ + A D DI L I F H G++L G+ R+ GDII G+
Sbjct: 74 FAPSYFSATADDFDI-RLLQIIYPEKFAELHHSTVQGTLLNAGLDRDVFGDIITDGDIW- 131
Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK----SFKTIEASLRVDAL 252
QF V + D++ ++++K+G V V T PL +Y P +F ++LR+D +
Sbjct: 132 QFFVAAHMQDWVTSNVDKIGRVGVHFTEHPL--ADYVTPENDWEPLNFSV--SALRLDTV 187
Query: 253 ASAGFKLSRSKLVNLIR 269
+ GF +SR + LI+
Sbjct: 188 VAHGFNISRQRAKTLIQ 204
>gi|421731791|ref|ZP_16170914.1| hypothetical protein WYY_11950 [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|407074004|gb|EKE46994.1| hypothetical protein WYY_11950 [Bacillus amyloliquefaciens subsp.
plantarum M27]
Length = 256
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 12/206 (5%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ-GGYPQAERCRLSV 139
+ +LE + + + +DFL P +E ++ + D +A GGY +AER R ++
Sbjct: 16 IDQVLEWKQIVLDQYRMKLTDFLDP---REQVIVKAVIGDACGLAFFGGYDRAERKR-AI 71
Query: 140 GHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
+PE + + D + A + F H LGS++G G+ R+K GD+I E+ Q
Sbjct: 72 LYPEYMEPEQDDFELRAFDVQYAEKFVSIDHRSLLGSLMGIGLKRQKYGDLIF-SEEAVQ 130
Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
+V E+AD++ T L K G V +I L AL + +SLR+DA+ ++
Sbjct: 131 LIVSAEIADFVSTQLTKAGKAPVKLEKIELSALHIPASDVEIRDDTVSSLRLDAVCASMS 190
Query: 258 KLSRSKLVNLIRYSSLASLVQISAKA 283
+ SR K L++ LV+++ KA
Sbjct: 191 RQSRQKAQALVK----NGLVKVNWKA 212
>gi|313895940|ref|ZP_07829494.1| S4 domain protein [Selenomonas sp. oral taxon 137 str. F0430]
gi|312975365|gb|EFR40826.1| S4 domain protein [Selenomonas sp. oral taxon 137 str. F0430]
Length = 264
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 77/143 (53%), Gaps = 2/143 (1%)
Query: 127 GGYPQAERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
GGY AER R + H + A T + ++ N F +H D LG+++G GI R +
Sbjct: 68 GGYAGAERQRAMLLHEDFAGTPGGYEIVCVTAAWNGQFAHLTHRDVLGALMGLGIDRGGV 127
Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
GDI+L G+ A+ L ++ +++ L +G V V+ L + RTK + A
Sbjct: 128 GDILLAGDT-AKILCDTKMVQFIMEELTMIGAVRVTTALGDLADIAPREERTKEIRATVA 186
Query: 246 SLRVDALASAGFKLSRSKLVNLI 268
SLR+DA+A+AGF +SRS+ + I
Sbjct: 187 SLRLDAIAAAGFGISRSRAADDI 209
>gi|422698173|ref|ZP_16756093.1| S4 domain protein [Enterococcus faecalis TX1346]
gi|315173285|gb|EFU17302.1| S4 domain protein [Enterococcus faecalis TX1346]
Length = 260
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 82/170 (48%), Gaps = 2/170 (1%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
+DFL P + + +D+ GGY QAER R + + + D V I
Sbjct: 36 TDFLDPRQAYILETLIRQNSDLSFTFYGGYEQAERKRCLIYPAYYIPEETDFGVVLFEII 95
Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 218
F SHG LG+++ G+ RE GDII G+K Q + E+A +++ ++K+G +
Sbjct: 96 YPSKFATLSHGKILGTLMNVGVRREAFGDIISDGDK-WQVFIAQEVAGFVVNQVDKIGKI 154
Query: 219 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+V + + + +T +SLR+D++ SA F +SR + LI
Sbjct: 155 TVRLEERDYIQILIPKDGWQEERTTMSSLRLDSVISAVFNISRQRSKQLI 204
>gi|375362185|ref|YP_005130224.1| putative RNA-binding protein ylmH [Bacillus amyloliquefaciens
subsp. plantarum CAU B946]
gi|371568179|emb|CCF05029.1| putative RNA-binding protein ylmH [Bacillus amyloliquefaciens
subsp. plantarum CAU B946]
Length = 256
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 12/206 (5%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ-GGYPQAERCRLSV 139
+ +LE + + + +DFL P +E ++ + D +A GGY +AER R ++
Sbjct: 16 IDQVLEWKQIVLDQYRMKLTDFLDP---REQVIVKAVIGDACGLAFFGGYDRAERKR-AI 71
Query: 140 GHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
+PE + + D + A + F H LGS++G G+ R+K GD+I E+ Q
Sbjct: 72 LYPEYMEPEQDDFELRAFDVQYAEKFVSIDHRSLLGSLMGVGLKRQKYGDLIF-SEEAVQ 130
Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
+V E+AD++ T L K G V +I L AL + +SLR+DA+ ++
Sbjct: 131 LIVSGEIADFVSTQLTKAGKAPVKLEKIELSALHIPASDVEIRDDTVSSLRLDAVCASMS 190
Query: 258 KLSRSKLVNLIRYSSLASLVQISAKA 283
+ SR K L++ LV+++ KA
Sbjct: 191 RQSRQKAQALVK----NGLVKVNWKA 212
>gi|308173503|ref|YP_003920208.1| shape determination protein [Bacillus amyloliquefaciens DSM 7]
gi|384159478|ref|YP_005541551.1| factor involved in shape determination, RNA-binding fold protein
[Bacillus amyloliquefaciens TA208]
gi|384164087|ref|YP_005545466.1| hypothetical protein LL3_01698 [Bacillus amyloliquefaciens LL3]
gi|384168525|ref|YP_005549903.1| hypothetical protein BAXH7_01923 [Bacillus amyloliquefaciens XH7]
gi|307606367|emb|CBI42738.1| factor involved in shape determination, RNA-binding fold [Bacillus
amyloliquefaciens DSM 7]
gi|328553566|gb|AEB24058.1| factor involved in shape determination, RNA-binding fold protein
[Bacillus amyloliquefaciens TA208]
gi|328911642|gb|AEB63238.1| factor involved in shape determination, RNA-binding fold [Bacillus
amyloliquefaciens LL3]
gi|341827804|gb|AEK89055.1| hypothetical protein BAXH7_01923 [Bacillus amyloliquefaciens XH7]
Length = 256
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 12/206 (5%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ-GGYPQAERCRLSV 139
+ +LE + + + +DFL P +E ++ + D +A GGY +AER R ++
Sbjct: 16 IDQVLEWKQIVQDQYRMKLTDFLDP---REQVIVKAVIGDACGLAFFGGYDRAERKR-AI 71
Query: 140 GHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
+PE + + D + A + F H LGS++G G+ R+K GD+I E+ Q
Sbjct: 72 LYPEYMEPEQDDFELRAFEVQYAEKFVSIDHRSLLGSLMGIGLKRQKYGDLIF-SEEAVQ 130
Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
+V E+AD++ T L K G V +I L AL + + +SLR+DA+ +
Sbjct: 131 LIVSGEIADFVGTQLTKAGKAPVKLEKIELSALHIPASDVEIREDTVSSLRLDAVCALMS 190
Query: 258 KLSRSKLVNLIRYSSLASLVQISAKA 283
+ SR K L++ LV+++ KA
Sbjct: 191 RQSRQKAQALVK----NGLVKVNWKA 212
>gi|399923764|ref|ZP_10781122.1| RNA-binding cell division protein [Peptoniphilus rhinitidis 1-13]
Length = 260
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 96/206 (46%), Gaps = 22/206 (10%)
Query: 78 IEEVKHILEMARRASSRREV------------LHSDFLTPPVLKESMMALEKLAD-VKAV 124
I+ V HI + R S R+ + + ++FL P + S+ L + D +
Sbjct: 7 IDLVNHINRVEDRTSIRQVIDKIESVINNHITISTNFLNPHEINLSISILNRFKDKISYE 66
Query: 125 AQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGY +E + + D D + AL N + H D LG++L I R K
Sbjct: 67 IDGGYEDSEASLIYIYPSYKYERDIDDIVALKFKSN---EKIKHSDVLGALLALSIDRRK 123
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYE-PPRTKSFKTI 243
IGDI++ G+K F V E+A+++ +L K+ +++ +R A Y+ P R +K I
Sbjct: 124 IGDILI-GKKFTYFFVKREVANFVEINLTKISKYNINLSR---EAKPYDLPKREYYYKDI 179
Query: 244 EA-SLRVDALASAGFKLSRSKLVNLI 268
A S R+D L S F LSR K +I
Sbjct: 180 VASSFRLDNLISKVFNLSRGKAKKMI 205
>gi|451347090|ref|YP_007445721.1| hypothetical protein KSO_011745 [Bacillus amyloliquefaciens IT-45]
gi|452855488|ref|YP_007497171.1| factor involved in shape determination,RNA-binding fold [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
gi|449850848|gb|AGF27840.1| hypothetical protein KSO_011745 [Bacillus amyloliquefaciens IT-45]
gi|452079748|emb|CCP21505.1| factor involved in shape determination,RNA-binding fold [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
Length = 256
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 12/206 (5%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ-GGYPQAERCRLSV 139
+ +LE + + + +DFL P +E ++ + D +A GGY +AER R ++
Sbjct: 16 IDQVLEWKQIVLDQYRMKLTDFLDP---REQVIVKAVIGDACGLAFFGGYDRAERKR-AI 71
Query: 140 GHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
+PE + + D + A + F H LGS++G G+ R+K GD+I E+ Q
Sbjct: 72 LYPEYMEPEQDDFELRAFDVQYAEKFVSIDHRSLLGSLMGIGLKRQKYGDLIF-SEEAVQ 130
Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
+V E+AD++ T L K G V +I L AL + +SLR+DA+ ++
Sbjct: 131 LIVSGEIADFVSTQLTKAGKAPVKLEKIELSALHIPASDVEIRDDTVSSLRLDAVCASMS 190
Query: 258 KLSRSKLVNLIRYSSLASLVQISAKA 283
+ SR K L++ LV+++ KA
Sbjct: 191 RQSRQKAQALVK----NGLVKVNWKA 212
>gi|322385897|ref|ZP_08059539.1| S4 domain-containing protein YlmH [Streptococcus cristatus ATCC
51100]
gi|417922465|ref|ZP_12565953.1| S4 domain protein [Streptococcus cristatus ATCC 51100]
gi|321270076|gb|EFX52994.1| S4 domain-containing protein YlmH [Streptococcus cristatus ATCC
51100]
gi|342832562|gb|EGU66857.1| S4 domain protein [Streptococcus cristatus ATCC 51100]
Length = 261
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 92/187 (49%), Gaps = 6/187 (3%)
Query: 85 LEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HP 142
+E+ +R ++ + FL P + + L K DV+ A Y +E ++ + +
Sbjct: 21 MELLQRVENQYSYETTAFLNPHQVN-ILKNLSKQYDVQVFASSDYFPSEFAKVLIAPSYY 79
Query: 143 EALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVV 201
+ D D+V L IT F +H +G++L GI R GDII+ ++ AQ V
Sbjct: 80 QLELEDFDVVL-LEITYASKFYKVTHSQIMGTLLHQLGIERRTFGDIIVVDDR-AQVFVD 137
Query: 202 PELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSR 261
L +Y IT++ K+ V V R+ + P TK+ + +SLR+D L + FKLSR
Sbjct: 138 RRLEEYFITNVSKIAKVPVRLRRVDFKDQLQDAPVTKTTDVLVSSLRLDKLVATVFKLSR 197
Query: 262 SKLVNLI 268
S+ V LI
Sbjct: 198 SQAVELI 204
>gi|239631634|ref|ZP_04674665.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|301066330|ref|YP_003788353.1| cell division protein, S4-like domain [Lactobacillus casei str.
Zhang]
gi|417980576|ref|ZP_12621256.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
12A]
gi|239526099|gb|EEQ65100.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|300438737|gb|ADK18503.1| Cell division protein, S4-like domain [Lactobacillus casei str.
Zhang]
gi|410524899|gb|EKP99806.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
12A]
Length = 259
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 96/197 (48%), Gaps = 16/197 (8%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
+ H E+ A + + +DF P ++ S+++ + D+K V GGYP+AER R+
Sbjct: 16 IDHFAELIETARTEYRPVLTDFTDPRQRLIATSLVSADD--DIKLVHFGGYPRAERQRII 73
Query: 139 VG--HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
+ A D DI L I F H G++L G+ R+ GDII G+
Sbjct: 74 FAPSYFSATAVDFDI-RLLQIIYPEKFAELHHSTVQGTLLNAGLDRDVFGDIITDGDIW- 131
Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK----SFKTIEASLRVDAL 252
QF V + D++ ++++K+G V V T PL +Y P +F ++LR+D +
Sbjct: 132 QFFVAAHMQDWVTSNVDKIGRVGVHFTEHPL--ADYVTPENDWEPLNFSV--SALRLDTV 187
Query: 253 ASAGFKLSRSKLVNLIR 269
+ GF +SR + LI+
Sbjct: 188 VAHGFNISRQRAKTLIQ 204
>gi|427392306|ref|ZP_18886311.1| hypothetical protein HMPREF9698_00117 [Alloiococcus otitis ATCC
51267]
gi|425731573|gb|EKU94389.1| hypothetical protein HMPREF9698_00117 [Alloiococcus otitis ATCC
51267]
Length = 260
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 94/196 (47%), Gaps = 6/196 (3%)
Query: 76 NAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERC 135
N + + ++ RR S + FL P + + D++ GG+P AER
Sbjct: 11 NEKDYIDLAVDWVRRVSDTYAPYLTSFLDPRQAYILATIVAQYPDLQVSYWGGHPGAERQ 70
Query: 136 RLSVGHPEALTSDP---DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQG 192
R S+ +PE L + DI A I F SHG +GSILGTGI R+K+GDII
Sbjct: 71 R-SLIYPEYLPTHELSYDI-AGFEIDYPHKFNKLSHGQIMGSILGTGIKRDKLGDIISDS 128
Query: 193 EKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDAL 252
+ QF + L+D++ +++VG+ V + + + I +SLR+D+
Sbjct: 129 GR-WQFFIDQGLSDFITIQVDRVGSSPVRLYSLDQTDIIDNQEDWTVDQVIVSSLRLDSF 187
Query: 253 ASAGFKLSRSKLVNLI 268
++ L+RSK +L+
Sbjct: 188 IASCLNLARSKAKSLV 203
>gi|168206094|ref|ZP_02632099.1| S4 domain protein [Clostridium perfringens E str. JGS1987]
gi|169343604|ref|ZP_02864603.1| S4 domain protein [Clostridium perfringens C str. JGS1495]
gi|169298164|gb|EDS80254.1| S4 domain protein [Clostridium perfringens C str. JGS1495]
gi|170662411|gb|EDT15094.1| S4 domain protein [Clostridium perfringens E str. JGS1987]
Length = 253
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 89/188 (47%), Gaps = 7/188 (3%)
Query: 97 VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS 156
V +F TP V S + L DV + G + ER R+ + E P ++ L
Sbjct: 34 VFTDEFYTPDVW--STLQEMNLFDVNVESFGFFEDGER-RVIAFNKEEYDLFP--ISLLR 88
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
I N F H D+LGSI+ GI R KIGD+IL+ + G V + D+LI +L K+
Sbjct: 89 IQCNTKFSKLEHKDYLGSIMALGINRNKIGDLILRDD-GCYVAVHHSIIDFLINNLNKIR 147
Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSLASL 276
N++ C I L E P + I S R+D + +A +SRSK ++ I S+
Sbjct: 148 NLNCKCEVIYDLD-EIPKPSYEEKNIIVTSKRLDCIVAALGNISRSKALDAINSGSVLLD 206
Query: 277 VQISAKAS 284
+I+ S
Sbjct: 207 YRITKDKS 214
>gi|336063821|ref|YP_004558680.1| S4 RNA-binding domain-containing protein [Streptococcus
pasteurianus ATCC 43144]
gi|334282021|dbj|BAK29594.1| S4 RNA-binding domain-containing protein [Streptococcus
pasteurianus ATCC 43144]
Length = 263
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 103/218 (47%), Gaps = 11/218 (5%)
Query: 73 GDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQA 132
G+ + IE++ ++ARR + +DFL P + + + V+ YP A
Sbjct: 14 GEYDFIEKID---DLARRVEATYAYALTDFLNPRQVDIARSVIGNRGLHYFVSSDYYP-A 69
Query: 133 ERCRLSVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSIL-GTGIAREKIGDII 189
E RL V P+ +P+ + L + N F +H +G++L GI R IGDI+
Sbjct: 70 EYARLIVA-PDYYEFNPEDFELTLLEVNYNSKFNQLTHSQIMGTLLHKLGIKRTVIGDIL 128
Query: 190 LQGEKG-AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLR 248
+ E G AQ LV +ADY + K+ SVS IPL L ++ I +S+R
Sbjct: 129 V--ESGYAQLLVTQNMADYFRADVTKIAKASVSLKEIPLEQLIAGEKDSRQLDIIVSSMR 186
Query: 249 VDALASAGFKLSRSKLVNLIRYSSLASLVQISAKASAI 286
+D + + KLSRS+ V L+ + QI +AS +
Sbjct: 187 MDKVLATVLKLSRSQAVQLMETDKVKLNYQIVDRASEM 224
>gi|110800170|ref|YP_696535.1| S4 domain-containing protein [Clostridium perfringens ATCC 13124]
gi|182625685|ref|ZP_02953454.1| S4 domain protein [Clostridium perfringens D str. JGS1721]
gi|422346521|ref|ZP_16427435.1| hypothetical protein HMPREF9476_01508 [Clostridium perfringens
WAL-14572]
gi|422874771|ref|ZP_16921256.1| S4 domain-containing protein [Clostridium perfringens F262]
gi|110674817|gb|ABG83804.1| S4 domain protein [Clostridium perfringens ATCC 13124]
gi|177909087|gb|EDT71562.1| S4 domain protein [Clostridium perfringens D str. JGS1721]
gi|373226066|gb|EHP48393.1| hypothetical protein HMPREF9476_01508 [Clostridium perfringens
WAL-14572]
gi|380304412|gb|EIA16701.1| S4 domain-containing protein [Clostridium perfringens F262]
Length = 253
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 89/188 (47%), Gaps = 7/188 (3%)
Query: 97 VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS 156
V +F TP V S + L DV + G + ER R+ + E P ++ L
Sbjct: 34 VFTDEFYTPDVW--STLQEMNLFDVNVESFGFFEDGER-RVIAFNKEEYDLFP--ISLLR 88
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
I N F H D+LGSI+ GI R KIGD+IL+ + G V + D+LI +L K+
Sbjct: 89 IQCNTKFSKLEHKDYLGSIMALGINRNKIGDLILRDD-GCYVAVHHSIIDFLINNLNKIR 147
Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSLASL 276
N++ C I L E P + I S R+D + +A +SRSK ++ I S+
Sbjct: 148 NLNCKCEIIYDLD-EIPKPSYEEKNIIVTSKRLDCIVAALGNISRSKALDAINSGSVLLD 206
Query: 277 VQISAKAS 284
+I+ S
Sbjct: 207 YRITKDKS 214
>gi|306830850|ref|ZP_07464012.1| S4 domain-containing protein YlmH [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
gi|304426873|gb|EFM29983.1| S4 domain-containing protein YlmH [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
Length = 263
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 99/210 (47%), Gaps = 8/210 (3%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
++ I ++ARR +DFL P + + + V+ YP AE RL V
Sbjct: 19 IEKIDDLARRVEETYAYALTDFLNPRQVDIAKSVIGNRGLHYFVSSDYYP-AEYARLIVA 77
Query: 141 HPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSIL-GTGIAREKIGDIILQGEKG-A 196
P+ +P+ + L + N F +H +G++L GI R IGDI++ E G A
Sbjct: 78 -PDYYEFNPEDFELTLLEVNYNSKFNQLTHSQIMGTLLHKLGIKRTVIGDILV--ESGYA 134
Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
Q LV +ADY ++ K+ SVS IPL L ++ + +S+R+D + +
Sbjct: 135 QLLVTQNMADYFRANVTKIAKASVSLKEIPLEQLIAGEKDSRQLDIMVSSMRMDKVLATV 194
Query: 257 FKLSRSKLVNLIRYSSLASLVQISAKASAI 286
KLSRS+ V LI + QI +AS +
Sbjct: 195 LKLSRSQAVQLIETDKVKLNYQIVDRASEM 224
>gi|288904818|ref|YP_003430040.1| hypothetical protein GALLO_0607 [Streptococcus gallolyticus UCN34]
gi|288731544|emb|CBI13099.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34]
Length = 261
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 99/210 (47%), Gaps = 8/210 (3%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
++ I ++ARR +DFL P + + + V+ YP AE RL V
Sbjct: 17 IEKIDDLARRVEETYAYALTDFLNPRQVDIAKSVIGNRGLHYFVSSDYYP-AEYARLIVA 75
Query: 141 HPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSIL-GTGIAREKIGDIILQGEKG-A 196
P+ +P+ + L + N F +H +G++L GI R IGDI++ E G A
Sbjct: 76 -PDYYEFNPEDFELTLLEVNYNSKFNQLTHSQIMGTLLHKLGIKRTVIGDILV--ESGYA 132
Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
Q LV +ADY ++ K+ SVS IPL L ++ + +S+R+D + +
Sbjct: 133 QLLVTQNMADYFRANVTKIAKASVSLKEIPLEQLIAGEKDSRQLDIMVSSMRMDKVLATV 192
Query: 257 FKLSRSKLVNLIRYSSLASLVQISAKASAI 286
KLSRS+ V LI + QI +AS +
Sbjct: 193 LKLSRSQAVQLIETDKVKLNYQIVDRASEM 222
>gi|347531807|ref|YP_004838570.1| RNA-binding S4 domain-containing protein [Roseburia hominis A2-183]
gi|345501955|gb|AEN96638.1| RNA-binding S4 domain-containing protein [Roseburia hominis A2-183]
Length = 250
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 102/194 (52%), Gaps = 13/194 (6%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
K +L+++R+A + VL SDFL L + EKL + GG P AER ++
Sbjct: 9 KRLLDLSRQADRKGIVLFSDFLNLNELNIYHQS-EKLFATRTECFGGIPCAER-QMIAFL 66
Query: 142 PEALTSDPDI-VAALSITGNF-GF-QPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
P+AL D + ++AL IT + F + H D LGS++ G+ R K+GDI++ GE+ A
Sbjct: 67 PDALYYDWEYPISALKITPAYPKFAEKLGHRDILGSLMQLGVDRCKLGDILV-GEQEAYL 125
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT---IEASLRVDALASA 255
L +ADY LEK+ + V L L+ T+ F+T I S R+DA+ +
Sbjct: 126 LCEETVADYFAEHLEKIRHTLVKVEPCSLSDLKV----TQEFQTQDGIVTSDRIDAVVAC 181
Query: 256 GFKLSRSKLVNLIR 269
+ LSRS+ L+R
Sbjct: 182 VYHLSRSQASLLLR 195
>gi|334127576|ref|ZP_08501488.1| S4 domain protein [Centipeda periodontii DSM 2778]
gi|333389530|gb|EGK60695.1| S4 domain protein [Centipeda periodontii DSM 2778]
Length = 264
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 76/144 (52%), Gaps = 2/144 (1%)
Query: 126 QGGYPQAERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGY AER R + H + A T D +A + N F +H D LG+++G GI RE
Sbjct: 67 NGGYAGAERQRAMLRHRDFAGTPDGFGIACVEAAWNGQFARLTHRDVLGAVMGLGIEREL 126
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
IGDI L A+ + ++A ++I +L +G V V + + RTK +
Sbjct: 127 IGDI-LPAADTAKIICDVKIAAFIIQNLTMIGAVGVKVQLSDVTEIAPREERTKEIRATV 185
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
ASLR+D++ +AGF +SRS+ + I
Sbjct: 186 ASLRLDSIVAAGFGISRSRAADDI 209
>gi|154504401|ref|ZP_02041139.1| hypothetical protein RUMGNA_01905 [Ruminococcus gnavus ATCC 29149]
gi|336432353|ref|ZP_08612188.1| hypothetical protein HMPREF0991_01307 [Lachnospiraceae bacterium
2_1_58FAA]
gi|153795330|gb|EDN77750.1| S4 domain protein [Ruminococcus gnavus ATCC 29149]
gi|336018690|gb|EGN48427.1| hypothetical protein HMPREF0991_01307 [Lachnospiraceae bacterium
2_1_58FAA]
Length = 262
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 100/202 (49%), Gaps = 19/202 (9%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLK-ESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
K + E++ A SR V +SDFL L M ++L K V GGY AER +++
Sbjct: 10 KRLSELSNLAYSRDIVTYSDFLNLNELNILHSMPKDRLY-TKFVTFGGYGLAER-QMAAF 67
Query: 141 HPEALTSDPDI-VAALSITGNFGF-------------QPCSHGDFLGSILGTGIAREKIG 186
P+AL+ ++ + G++ F + +H D+LG+ILG GI R KIG
Sbjct: 68 LPDALSLRGEMSWCSEEEWGDYPFDILRISPLHAKYAEQLTHRDYLGTILGLGIERAKIG 127
Query: 187 DIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEAS 246
DI++ G F V L +L+ L +V + V I +YEP + T+ AS
Sbjct: 128 DILVDGTDAVVF-VHRTLQSFLMEELTRVRHTQVLVKEISREDFQYEPKYEEIRGTV-AS 185
Query: 247 LRVDALASAGFKLSRSKLVNLI 268
+R+D+L S F SR+KL LI
Sbjct: 186 VRLDSLLSLAFSASRTKLSGLI 207
>gi|81428368|ref|YP_395368.1| hypothetical protein LSA0754 [Lactobacillus sakei subsp. sakei 23K]
gi|78610010|emb|CAI55058.1| Hypothetical protein LCA_0754 [Lactobacillus sakei subsp. sakei
23K]
Length = 262
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 92/197 (46%), Gaps = 16/197 (8%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +L+ +A++ + +DFL P + + ++K GGY AER R +
Sbjct: 19 VAQVLDWIEQATTEYRAILTDFLDPRQAYILQTLIGEKGELKYHFSGGYNAAERQRALIA 78
Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFL 199
+ D + I F SHG LG+++ GI R GDI+ G++ QF
Sbjct: 79 PTYFEPEEADFEIQLFEIRYPIKFAQLSHGKILGTLVNAGIDRNVFGDIMTDGQRW-QFF 137
Query: 200 VVPELADYLITSLEKVGNVSVSCTR-------IPLLALEYEPPRTKSFKTIEASLRVDAL 252
V ++ADY+++ + K+G V+V IP A ++E + + +S R+D +
Sbjct: 138 VTTKMADYVVSQITKIGKVTVHLEEQAYTELIIPKDAWQFE-------QLLVSSFRLDTI 190
Query: 253 ASAGFKLSRSKLVNLIR 269
+A + +SR + L++
Sbjct: 191 IAAVYNMSRQRAKELVQ 207
>gi|110802596|ref|YP_699135.1| S4 domain-containing protein [Clostridium perfringens SM101]
gi|110683097|gb|ABG86467.1| S4 domain protein [Clostridium perfringens SM101]
Length = 253
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 89/188 (47%), Gaps = 7/188 (3%)
Query: 97 VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS 156
V +F TP V S + L DV + G + ER R+ + E P ++ L
Sbjct: 34 VFTDEFYTPDVW--STLQEMNLFDVNVESFGFFEDGER-RVIAFNKEEYDLFP--ISLLR 88
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
I N F H D+LGSI+ GI R KIGD+IL+ + G V + D+LI +L K+
Sbjct: 89 IQCNTKFSKLEHKDYLGSIMALGINRNKIGDLILRDD-GCYVAVHHSIIDFLINNLNKIR 147
Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSLASL 276
N++ C I L E P + I S R+D + +A +SRSK ++ I S+
Sbjct: 148 NLNCKCEIIYDLD-ETPKPSYEEKNIIVTSKRLDCIVAALGNISRSKALDAINSGSVLLD 206
Query: 277 VQISAKAS 284
+I+ S
Sbjct: 207 YRITKDKS 214
>gi|350269426|ref|YP_004880734.1| hypothetical protein OBV_10300 [Oscillibacter valericigenes
Sjm18-20]
gi|348594268|dbj|BAK98228.1| hypothetical protein OBV_10300 [Oscillibacter valericigenes
Sjm18-20]
Length = 265
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 9/201 (4%)
Query: 75 KNAIEEV--KHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYP 130
KN E + +L+ + +R +DFL+P E ++ L + + V GGY
Sbjct: 12 KNGEERLILARVLDRLEQTRNRNIPAATDFLSPQEQASAEMLLHLAGVDGTEYVPLGGYE 71
Query: 131 QAERCRLSVGHPEALTSDPDIVAALSITGNFGFQP---CSHGDFLGSILGTGIAREKIGD 187
AER ++ + P+ L + + ++P SH D LGS++G GI REK GD
Sbjct: 72 GAER-KIFLFLPDWLDAQSAAEQSPIRCLRAKYRPEYDLSHRDILGSLMGMGITREKTGD 130
Query: 188 IILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASL 247
I++ G++ +V+ +AD+L+ S ++ G +S + + L + + SL
Sbjct: 131 ILV-GKESCDLIVLDSVADFLLQSWDQAGRAKLSVSAVGTADLSMPEESCEEVRDTVMSL 189
Query: 248 RVDALASAGFKLSRSKLVNLI 268
R+DA+A+ GFK++R K LI
Sbjct: 190 RLDAVAATGFKMARGKAAALI 210
>gi|381183326|ref|ZP_09892070.1| S4 domain protein, partial [Listeriaceae bacterium TTU M1-001]
gi|380316771|gb|EIA20146.1| S4 domain protein, partial [Listeriaceae bacterium TTU M1-001]
Length = 216
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 100/206 (48%), Gaps = 10/206 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ ILE+ + + +DFL P + +++ GG P ER R ++
Sbjct: 16 IDQILEITMQVTDEYTPKLTDFLDPRQRFIVQTIIGGYDNIEVAFSGGTPFTERKR-ALI 74
Query: 141 HPEALT-SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P+ T D D + I F SH LG+++ GI R+ GDI+ G++ QF
Sbjct: 75 YPDYYTPEDEDFNLTLFHIRYPVKFTTLSHQKILGTLMSLGIKRDIFGDIVNLGDEW-QF 133
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPL-LALEYEPPRTKSFKTIEASLRVDALASAGF 257
E+ +Y++ L+K+G V++ + PL AL+ E T T +SLR+D++ +
Sbjct: 134 FADAEMENYILNQLDKIGKVNIMLEKWPLDEALQVEQVWTGEMIT-ASSLRLDSIIANAL 192
Query: 258 KLSRSKLVNLIRYSSLASLVQISAKA 283
LSR K+ +I+ A LV+++ K
Sbjct: 193 HLSRQKVKQMIQ----AKLVKVNWKV 214
>gi|347542604|ref|YP_004857241.1| S4 domain-containing protein [Candidatus Arthromitus sp.
SFB-rat-Yit]
gi|346985640|dbj|BAK81315.1| S4 domain protein [Candidatus Arthromitus sp. SFB-rat-Yit]
Length = 258
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 106/209 (50%), Gaps = 26/209 (12%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRA-SSRREVLHSDFLTPPVLK--ESMMALEKLADVK 122
+D +K G N+IE+ + + A S + ++ ++F T V +S ++ ++L
Sbjct: 5 NDFIKSCG--NSIEDANKLFSLYVSALKSGKTMITNEFYTVNVCNVLKSFLSTKEL---N 59
Query: 123 AVAQGGYPQAERCRL--SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGI 180
+ G AERC + S+G + D D+ L I+ N F SH DFLGSI+ G
Sbjct: 60 VLCYGFVDDAERCLIAFSIGEIDLSIFD-DVAKVLKISYNDKFNKLSHRDFLGSIMSLGF 118
Query: 181 AREKIGDIILQGEKGAQFL-VVPELADYLITSLEKVG----NVSVSC-TRIPLLALEYEP 234
+REK+GD+++ E + ++ VV + DY+I +L KV NV+V R+P
Sbjct: 119 SREKMGDLVI--ENNSVYVPVVIDFVDYIIQNLIKVKHSPVNVAVELFNRLP-------Q 169
Query: 235 PRTKSFKTIEASLRVDALASAGFKLSRSK 263
R + + +SLR+D + S+ +SR K
Sbjct: 170 KRFEILYKVVSSLRIDNIISSLTNVSREK 198
>gi|256957094|ref|ZP_05561265.1| RNA-binding protein S4 [Enterococcus faecalis DS5]
gi|422711803|ref|ZP_16768730.1| S4 domain protein [Enterococcus faecalis TX0027]
gi|256947590|gb|EEU64222.1| RNA-binding protein S4 [Enterococcus faecalis DS5]
gi|315034230|gb|EFT46162.1| S4 domain protein [Enterococcus faecalis TX0027]
Length = 260
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 81/170 (47%), Gaps = 2/170 (1%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
+DFL P + + +D+ GGY QAER R + + + D V I
Sbjct: 36 TDFLDPRQAYILETLIRQNSDLSFTFYGGYEQAERKRCLIYPAYYIPEETDFGVVLFEII 95
Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 218
F SHG LG+++ G+ RE GDII G+K Q + E+A +++ ++K+G +
Sbjct: 96 YPSKFATLSHGKILGTLMNVGVRREAFGDIISDGDK-WQVFIAQEVAGFVVNQVDKIGKI 154
Query: 219 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+V + + +T +SLR+D++ SA F +SR + LI
Sbjct: 155 TVRLEERDYTQILIPKDGWQEERTTMSSLRLDSVISAVFNISRQRSKQLI 204
>gi|336113714|ref|YP_004568481.1| RNA-binding S4 domain-containing protein [Bacillus coagulans 2-6]
gi|335367144|gb|AEH53095.1| RNA-binding S4 domain protein [Bacillus coagulans 2-6]
Length = 258
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 93/187 (49%), Gaps = 10/187 (5%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 157
+DFL P + + V A GGY ++ER R+ + P+ + D D +A +
Sbjct: 35 TDFLDPRMQQIVNTVTGNHGAVSVRAFGGYKESERKRI-LFFPDYFSPDEDDFHLALFEV 93
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
F H LGS++ G+ REK GDI++ GE QF ELAD++ ++G
Sbjct: 94 HYPAKFVSFEHKHVLGSLMALGLKREKFGDILI-GEGRIQFFAAAELADFIQMEFRQIGK 152
Query: 218 VSVSCTRIPL-LALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSLASL 276
V+ T++ L A+ + + T+ +SLR+DA+ SA + +SR K LI + L
Sbjct: 153 TPVTLTKMQLDQAIRQQQHWLEKQATV-SSLRLDAILSAVYNISRQKTRMLIEH----GL 207
Query: 277 VQISAKA 283
V+++ K
Sbjct: 208 VKVNWKT 214
>gi|168210785|ref|ZP_02636410.1| S4 domain protein [Clostridium perfringens B str. ATCC 3626]
gi|170711149|gb|EDT23331.1| S4 domain protein [Clostridium perfringens B str. ATCC 3626]
Length = 253
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 88/188 (46%), Gaps = 7/188 (3%)
Query: 97 VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS 156
V +F TP V S + L DV + G + ER ++ E D ++ L
Sbjct: 34 VFTDEFYTPDVW--STLQEMNLFDVNVESFGFFEDGERRVIAFNKDEY---DLFPISLLR 88
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
I N F H D+LGSI+ GI R KIGD+IL+ + G V + D+LI +L K+
Sbjct: 89 IQCNTKFSKLEHKDYLGSIMALGINRNKIGDLILRDD-GCYVAVHHSIIDFLINNLNKIR 147
Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSLASL 276
N++ C I L E P + I S R+D + +A +SRSK ++ I S+
Sbjct: 148 NLNCKCEIIYDLD-EIPKPSYEEKNIIVTSKRLDCIVAALGNISRSKALDAINSGSVLLD 206
Query: 277 VQISAKAS 284
+I+ S
Sbjct: 207 YRITKDKS 214
>gi|325977748|ref|YP_004287464.1| hypothetical protein SGGBAA2069_c05480 [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
gi|386337259|ref|YP_006033428.1| S4 RNA-binding domain-containing protein [Streptococcus
gallolyticus subsp. gallolyticus ATCC 43143]
gi|325177676|emb|CBZ47720.1| conserved hypothetical protein [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|334279895|dbj|BAK27469.1| S4 RNA-binding domain-containing protein [Streptococcus
gallolyticus subsp. gallolyticus ATCC 43143]
Length = 263
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 99/210 (47%), Gaps = 8/210 (3%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
++ I ++ARR +DFL P + + + V+ YP AE RL V
Sbjct: 19 IEKIDDLARRVEETYAYALTDFLNPRQVDIAKSVIGNRGLHYFVSSDYYP-AEYARLIVA 77
Query: 141 HPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSIL-GTGIAREKIGDIILQGEKG-A 196
P+ +P+ + L + N F +H +G++L GI R IGDI++ E G A
Sbjct: 78 -PDYYEFNPEDFELILLEVNYNSKFNQLTHSQIMGTLLHKLGIKRTVIGDILV--ESGYA 134
Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
Q LV +ADY ++ K+ SVS IPL L ++ + +S+R+D + +
Sbjct: 135 QLLVTQNMADYFRANVTKIAKASVSLKEIPLEQLIAGEKDSRQLDIMVSSMRMDKVLATV 194
Query: 257 FKLSRSKLVNLIRYSSLASLVQISAKASAI 286
KLSRS+ V LI + QI +AS +
Sbjct: 195 LKLSRSQAVQLIETDKVKLNYQIVDRASEM 224
>gi|29375583|ref|NP_814737.1| S4 domain-containing protein [Enterococcus faecalis V583]
gi|227517924|ref|ZP_03947973.1| ribosomal protein S4e [Enterococcus faecalis TX0104]
gi|227555111|ref|ZP_03985158.1| ribosomal protein S4e [Enterococcus faecalis HH22]
gi|229546848|ref|ZP_04435573.1| ribosomal protein S4e [Enterococcus faecalis TX1322]
gi|229548942|ref|ZP_04437667.1| ribosomal protein S4e [Enterococcus faecalis ATCC 29200]
gi|255971455|ref|ZP_05422041.1| S4 domain-containing protein [Enterococcus faecalis T1]
gi|255974070|ref|ZP_05424656.1| RNA-binding S4 [Enterococcus faecalis T2]
gi|256761759|ref|ZP_05502339.1| S4 domain-containing protein [Enterococcus faecalis T3]
gi|256852654|ref|ZP_05558025.1| S4 domain-containing protein [Enterococcus faecalis T8]
gi|256960185|ref|ZP_05564356.1| RNA-binding protein S4 [Enterococcus faecalis Merz96]
gi|256962573|ref|ZP_05566744.1| RNA-binding protein S4 [Enterococcus faecalis HIP11704]
gi|257077890|ref|ZP_05572251.1| RNA-binding protein S4 [Enterococcus faecalis JH1]
gi|257081254|ref|ZP_05575615.1| S4 domain-containing protein [Enterococcus faecalis E1Sol]
gi|257083912|ref|ZP_05578273.1| S4 domain-containing protein [Enterococcus faecalis Fly1]
gi|257086360|ref|ZP_05580721.1| RNA-binding protein S4 [Enterococcus faecalis D6]
gi|257089410|ref|ZP_05583771.1| S4 RNA binding protein [Enterococcus faecalis CH188]
gi|257415620|ref|ZP_05592614.1| RNA-binding protein S4 [Enterococcus faecalis ARO1/DG]
gi|257418591|ref|ZP_05595585.1| S4 RNA binding protein [Enterococcus faecalis T11]
gi|257421250|ref|ZP_05598240.1| S4 RNA binding protein [Enterococcus faecalis X98]
gi|293382550|ref|ZP_06628484.1| YlmH protein [Enterococcus faecalis R712]
gi|293387849|ref|ZP_06632388.1| YlmH protein [Enterococcus faecalis S613]
gi|294779255|ref|ZP_06744659.1| S4 domain protein [Enterococcus faecalis PC1.1]
gi|307268081|ref|ZP_07549469.1| S4 domain protein [Enterococcus faecalis TX4248]
gi|307272015|ref|ZP_07553281.1| S4 domain protein [Enterococcus faecalis TX0855]
gi|307275484|ref|ZP_07556626.1| S4 domain protein [Enterococcus faecalis TX2134]
gi|307278948|ref|ZP_07560007.1| S4 domain protein [Enterococcus faecalis TX0860]
gi|307289397|ref|ZP_07569351.1| S4 domain protein [Enterococcus faecalis TX0109]
gi|307290037|ref|ZP_07569961.1| S4 domain protein [Enterococcus faecalis TX0411]
gi|312901040|ref|ZP_07760331.1| S4 domain protein [Enterococcus faecalis TX0470]
gi|312904563|ref|ZP_07763721.1| S4 domain protein [Enterococcus faecalis TX0635]
gi|312906847|ref|ZP_07765844.1| S4 domain protein [Enterococcus faecalis DAPTO 512]
gi|312952727|ref|ZP_07771589.1| S4 domain protein [Enterococcus faecalis TX0102]
gi|312978898|ref|ZP_07790624.1| S4 domain protein [Enterococcus faecalis DAPTO 516]
gi|384518107|ref|YP_005705412.1| S4 domain-containing protein [Enterococcus faecalis 62]
gi|397699394|ref|YP_006537182.1| S4 domain protein [Enterococcus faecalis D32]
gi|421513308|ref|ZP_15960085.1| hypothetical protein A961_1192 [Enterococcus faecalis ATCC 29212]
gi|422685579|ref|ZP_16743795.1| S4 domain protein [Enterococcus faecalis TX4000]
gi|422689642|ref|ZP_16747746.1| S4 domain protein [Enterococcus faecalis TX0630]
gi|422692291|ref|ZP_16750313.1| S4 domain protein [Enterococcus faecalis TX0031]
gi|422694608|ref|ZP_16752599.1| S4 domain protein [Enterococcus faecalis TX4244]
gi|422703302|ref|ZP_16761124.1| S4 domain protein [Enterococcus faecalis TX1302]
gi|422705611|ref|ZP_16763407.1| S4 domain protein [Enterococcus faecalis TX0043]
gi|422713480|ref|ZP_16770230.1| S4 domain protein [Enterococcus faecalis TX0309A]
gi|422717493|ref|ZP_16774177.1| S4 domain protein [Enterococcus faecalis TX0309B]
gi|422721041|ref|ZP_16777646.1| S4 domain protein [Enterococcus faecalis TX0017]
gi|422722954|ref|ZP_16779503.1| S4 domain protein [Enterococcus faecalis TX2137]
gi|422727525|ref|ZP_16783966.1| S4 domain protein [Enterococcus faecalis TX0312]
gi|422729992|ref|ZP_16786387.1| S4 domain protein [Enterococcus faecalis TX0012]
gi|422735191|ref|ZP_16791465.1| S4 domain protein [Enterococcus faecalis TX1341]
gi|422868629|ref|ZP_16915167.1| S4 domain protein [Enterococcus faecalis TX1467]
gi|424679105|ref|ZP_18115936.1| S4 domain protein [Enterococcus faecalis ERV103]
gi|424682303|ref|ZP_18119078.1| S4 domain protein [Enterococcus faecalis ERV116]
gi|424684054|ref|ZP_18120782.1| S4 domain protein [Enterococcus faecalis ERV129]
gi|424686879|ref|ZP_18123541.1| S4 domain protein [Enterococcus faecalis ERV25]
gi|424690051|ref|ZP_18126587.1| S4 domain protein [Enterococcus faecalis ERV31]
gi|424692289|ref|ZP_18128792.1| S4 domain protein [Enterococcus faecalis ERV37]
gi|424698027|ref|ZP_18134335.1| S4 domain protein [Enterococcus faecalis ERV41]
gi|424700554|ref|ZP_18136738.1| S4 domain protein [Enterococcus faecalis ERV62]
gi|424705582|ref|ZP_18141612.1| S4 domain protein [Enterococcus faecalis ERV63]
gi|424712420|ref|ZP_18144603.1| S4 domain protein [Enterococcus faecalis ERV65]
gi|424716268|ref|ZP_18145581.1| S4 domain protein [Enterococcus faecalis ERV68]
gi|424721631|ref|ZP_18150713.1| S4 domain protein [Enterococcus faecalis ERV72]
gi|424723706|ref|ZP_18152661.1| S4 domain protein [Enterococcus faecalis ERV73]
gi|424729462|ref|ZP_18158063.1| S4 domain protein [Enterococcus faecalis ERV81]
gi|424735079|ref|ZP_18163552.1| S4 domain protein [Enterococcus faecalis ERV85]
gi|424751824|ref|ZP_18179845.1| S4 domain protein [Enterococcus faecalis ERV93]
gi|424757106|ref|ZP_18184870.1| S4 domain protein [Enterococcus faecalis R508]
gi|29343044|gb|AAO80807.1| S4 domain protein [Enterococcus faecalis V583]
gi|227074678|gb|EEI12641.1| ribosomal protein S4e [Enterococcus faecalis TX0104]
gi|227175779|gb|EEI56751.1| ribosomal protein S4e [Enterococcus faecalis HH22]
gi|229305963|gb|EEN71959.1| ribosomal protein S4e [Enterococcus faecalis ATCC 29200]
gi|229308013|gb|EEN74000.1| ribosomal protein S4e [Enterococcus faecalis TX1322]
gi|255962473|gb|EET94949.1| S4 domain-containing protein [Enterococcus faecalis T1]
gi|255966942|gb|EET97564.1| RNA-binding S4 [Enterococcus faecalis T2]
gi|256683010|gb|EEU22705.1| S4 domain-containing protein [Enterococcus faecalis T3]
gi|256711999|gb|EEU27036.1| S4 domain-containing protein [Enterococcus faecalis T8]
gi|256950681|gb|EEU67313.1| RNA-binding protein S4 [Enterococcus faecalis Merz96]
gi|256953069|gb|EEU69701.1| RNA-binding protein S4 [Enterococcus faecalis HIP11704]
gi|256985920|gb|EEU73222.1| RNA-binding protein S4 [Enterococcus faecalis JH1]
gi|256989284|gb|EEU76586.1| S4 domain-containing protein [Enterococcus faecalis E1Sol]
gi|256991942|gb|EEU79244.1| S4 domain-containing protein [Enterococcus faecalis Fly1]
gi|256994390|gb|EEU81692.1| RNA-binding protein S4 [Enterococcus faecalis D6]
gi|256998222|gb|EEU84742.1| S4 RNA binding protein [Enterococcus faecalis CH188]
gi|257157448|gb|EEU87408.1| RNA-binding protein S4 [Enterococcus faecalis ARO1/DG]
gi|257160419|gb|EEU90379.1| S4 RNA binding protein [Enterococcus faecalis T11]
gi|257163074|gb|EEU93034.1| S4 RNA binding protein [Enterococcus faecalis X98]
gi|291080098|gb|EFE17462.1| YlmH protein [Enterococcus faecalis R712]
gi|291082696|gb|EFE19659.1| YlmH protein [Enterococcus faecalis S613]
gi|294453622|gb|EFG22020.1| S4 domain protein [Enterococcus faecalis PC1.1]
gi|295113824|emb|CBL32461.1| Uncharacterized conserved protein, contains S4-like domain
[Enterococcus sp. 7L76]
gi|306498879|gb|EFM68373.1| S4 domain protein [Enterococcus faecalis TX0411]
gi|306499652|gb|EFM69015.1| S4 domain protein [Enterococcus faecalis TX0109]
gi|306504335|gb|EFM73546.1| S4 domain protein [Enterococcus faecalis TX0860]
gi|306507872|gb|EFM77000.1| S4 domain protein [Enterococcus faecalis TX2134]
gi|306511310|gb|EFM80314.1| S4 domain protein [Enterococcus faecalis TX0855]
gi|306515722|gb|EFM84249.1| S4 domain protein [Enterococcus faecalis TX4248]
gi|310627101|gb|EFQ10384.1| S4 domain protein [Enterococcus faecalis DAPTO 512]
gi|310629243|gb|EFQ12526.1| S4 domain protein [Enterococcus faecalis TX0102]
gi|310632076|gb|EFQ15359.1| S4 domain protein [Enterococcus faecalis TX0635]
gi|311288335|gb|EFQ66891.1| S4 domain protein [Enterococcus faecalis DAPTO 516]
gi|311291866|gb|EFQ70422.1| S4 domain protein [Enterococcus faecalis TX0470]
gi|315026977|gb|EFT38909.1| S4 domain protein [Enterococcus faecalis TX2137]
gi|315029690|gb|EFT41622.1| S4 domain protein [Enterococcus faecalis TX4000]
gi|315031713|gb|EFT43645.1| S4 domain protein [Enterococcus faecalis TX0017]
gi|315147952|gb|EFT91968.1| S4 domain protein [Enterococcus faecalis TX4244]
gi|315149523|gb|EFT93539.1| S4 domain protein [Enterococcus faecalis TX0012]
gi|315153077|gb|EFT97093.1| S4 domain protein [Enterococcus faecalis TX0031]
gi|315156850|gb|EFU00867.1| S4 domain protein [Enterococcus faecalis TX0043]
gi|315157636|gb|EFU01653.1| S4 domain protein [Enterococcus faecalis TX0312]
gi|315165134|gb|EFU09151.1| S4 domain protein [Enterococcus faecalis TX1302]
gi|315168033|gb|EFU12050.1| S4 domain protein [Enterococcus faecalis TX1341]
gi|315574255|gb|EFU86446.1| S4 domain protein [Enterococcus faecalis TX0309B]
gi|315577383|gb|EFU89574.1| S4 domain protein [Enterococcus faecalis TX0630]
gi|315581590|gb|EFU93781.1| S4 domain protein [Enterococcus faecalis TX0309A]
gi|323480240|gb|ADX79679.1| S4 domain protein [Enterococcus faecalis 62]
gi|329574343|gb|EGG55915.1| S4 domain protein [Enterococcus faecalis TX1467]
gi|397336033|gb|AFO43705.1| S4 domain protein [Enterococcus faecalis D32]
gi|401673562|gb|EJS79943.1| hypothetical protein A961_1192 [Enterococcus faecalis ATCC 29212]
gi|402349353|gb|EJU84304.1| S4 domain protein [Enterococcus faecalis ERV116]
gi|402349386|gb|EJU84336.1| S4 domain protein [Enterococcus faecalis ERV103]
gi|402362990|gb|EJU97500.1| S4 domain protein [Enterococcus faecalis ERV129]
gi|402365185|gb|EJU99611.1| S4 domain protein [Enterococcus faecalis ERV31]
gi|402366586|gb|EJV00956.1| S4 domain protein [Enterococcus faecalis ERV25]
gi|402373645|gb|EJV07716.1| S4 domain protein [Enterococcus faecalis ERV62]
gi|402373936|gb|EJV07984.1| S4 domain protein [Enterococcus faecalis ERV41]
gi|402378680|gb|EJV12518.1| S4 domain protein [Enterococcus faecalis ERV37]
gi|402379006|gb|EJV12827.1| S4 domain protein [Enterococcus faecalis ERV63]
gi|402380914|gb|EJV14653.1| S4 domain protein [Enterococcus faecalis ERV65]
gi|402388461|gb|EJV21900.1| S4 domain protein [Enterococcus faecalis ERV68]
gi|402390798|gb|EJV24119.1| S4 domain protein [Enterococcus faecalis ERV72]
gi|402393916|gb|EJV27122.1| S4 domain protein [Enterococcus faecalis ERV81]
gi|402397415|gb|EJV30433.1| S4 domain protein [Enterococcus faecalis ERV73]
gi|402404696|gb|EJV37312.1| S4 domain protein [Enterococcus faecalis ERV85]
gi|402405320|gb|EJV37917.1| S4 domain protein [Enterococcus faecalis ERV93]
gi|402407634|gb|EJV40151.1| S4 domain protein [Enterococcus faecalis R508]
Length = 260
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 81/170 (47%), Gaps = 2/170 (1%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
+DFL P + + +D+ GGY QAER R + + + D V I
Sbjct: 36 TDFLDPRQAYILETLIRQNSDLSFTFYGGYEQAERKRCLIYPAYYIPEETDFGVVLFEII 95
Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 218
F SHG LG+++ G+ RE GDII G+K Q + E+A +++ ++K+G +
Sbjct: 96 YPSKFATLSHGKILGTLMNVGVRREAFGDIISDGDK-WQVFIAQEVAGFVVNQVDKIGKI 154
Query: 219 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+V + + +T +SLR+D++ SA F +SR + LI
Sbjct: 155 TVRLEERDYTQILIPKDGWQEERTTMSSLRLDSVISAVFNISRQRSKQLI 204
>gi|385264665|ref|ZP_10042752.1| S4 domain-containing protein [Bacillus sp. 5B6]
gi|385149161|gb|EIF13098.1| S4 domain-containing protein [Bacillus sp. 5B6]
Length = 256
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 95/187 (50%), Gaps = 12/187 (6%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQ-GGYPQAERCRLSVGHPEALTSDPDI--VAALS 156
+DFL P +E ++ + D +A GGY +AER R ++ +PE + + D + A
Sbjct: 35 TDFLDP---REQVIVKAVIGDACGLAFFGGYDRAERKR-AILYPEYMEPEQDDFELRAFD 90
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
+ F H LGS++G G+ R+K GD+I E+ Q +V E+AD++ T L K G
Sbjct: 91 VQYAEKFVSIDHRSLLGSLMGIGLKRQKYGDLIF-SEEAVQLIVSGEIADFVRTQLTKAG 149
Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSLASL 276
V +I L AL + +SLR+DA+ ++ + SR K L++ L
Sbjct: 150 KAPVKLEKIELSALHIPASDVEIRDDTVSSLRLDAVCASMSRQSRQKAQALVK----NGL 205
Query: 277 VQISAKA 283
V+++ KA
Sbjct: 206 VKVNWKA 212
>gi|154685957|ref|YP_001421118.1| hypothetical protein RBAM_015240 [Bacillus amyloliquefaciens FZB42]
gi|384265122|ref|YP_005420829.1| putative RNA-binding protein ylmH [Bacillus amyloliquefaciens
subsp. plantarum YAU B9601-Y2]
gi|387898117|ref|YP_006328413.1| hypothetical protein MUS_1688 [Bacillus amyloliquefaciens Y2]
gi|394993877|ref|ZP_10386616.1| YlmH [Bacillus sp. 916]
gi|429505092|ref|YP_007186276.1| hypothetical protein B938_07910 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|154351808|gb|ABS73887.1| YlmH [Bacillus amyloliquefaciens FZB42]
gi|380498475|emb|CCG49513.1| putative RNA-binding protein ylmH [Bacillus amyloliquefaciens
subsp. plantarum YAU B9601-Y2]
gi|387172227|gb|AFJ61688.1| conserved hypothetical protein YlmH [Bacillus amyloliquefaciens Y2]
gi|393805201|gb|EJD66581.1| YlmH [Bacillus sp. 916]
gi|429486682|gb|AFZ90606.1| hypothetical protein B938_07910 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
Length = 256
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 95/187 (50%), Gaps = 12/187 (6%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQ-GGYPQAERCRLSVGHPEALTSDPDI--VAALS 156
+DFL P +E ++ + D +A GGY +AER R ++ +PE + + D + A
Sbjct: 35 TDFLDP---REQVIVKAVIGDACGLAFFGGYDRAERKR-AILYPEYMEPEQDDFELRAFD 90
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
+ F H LGS++G G+ R+K GD+I E+ Q +V E+AD++ T L K G
Sbjct: 91 VQYAEKFVSIDHRSLLGSLMGIGLKRQKYGDLIF-SEEAVQLIVSGEIADFVSTQLTKAG 149
Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSLASL 276
V +I L AL + +SLR+DA+ ++ + SR K L++ L
Sbjct: 150 KAPVKLEKIELSALHIPASDVEIRDDTVSSLRLDAVCASMSRQSRQKAQALVK----NGL 205
Query: 277 VQISAKA 283
V+++ KA
Sbjct: 206 VKVNWKA 212
>gi|167758166|ref|ZP_02430293.1| hypothetical protein CLOSCI_00504 [Clostridium scindens ATCC 35704]
gi|167664063|gb|EDS08193.1| S4 domain protein [Clostridium scindens ATCC 35704]
Length = 251
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 96/190 (50%), Gaps = 6/190 (3%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
K + E++R A +R V S+FL L + + + GGY +ER +++
Sbjct: 10 KRLAELSRIAYTREIVTFSEFLNLNELNILHTTPKDMLLSQYKTYGGYGLSER-QMAAFL 68
Query: 142 PEALTSD---PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
P+AL D P + +S + SH D+LG+++ GI R K+GDI+++ K F
Sbjct: 69 PDALYYDYQYPIQIIEISPVNRKFAEELSHRDYLGAVMNLGIERCKLGDILIEDGKAILF 128
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
ELA Y++ L ++ + +V + + YE PR + K AS+R+D + S +
Sbjct: 129 -AKEELAGYIMEHLTRIRHTTVKTSILSAFEDSYE-PRYEELKGTVASVRLDTVLSLAYP 186
Query: 259 LSRSKLVNLI 268
LSRSK+ LI
Sbjct: 187 LSRSKITGLI 196
>gi|18310834|ref|NP_562768.1| S4 domain-containing protein [Clostridium perfringens str. 13]
gi|168215480|ref|ZP_02641105.1| S4 domain protein [Clostridium perfringens NCTC 8239]
gi|18145516|dbj|BAB81558.1| probable cell-division protein [Clostridium perfringens str. 13]
gi|182382018|gb|EDT79497.1| S4 domain protein [Clostridium perfringens NCTC 8239]
Length = 253
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 88/188 (46%), Gaps = 7/188 (3%)
Query: 97 VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS 156
V +F TP V S + L DV + G + ER ++ E D ++ L
Sbjct: 34 VFTDEFYTPDVW--STLQEMNLFDVNVESFGFFEDGERRVIAFNKDEY---DLFPISLLR 88
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
I N F H D+LGSI+ GI R KIGD+IL+ + G V + D+LI +L K+
Sbjct: 89 IQCNTKFSKLEHKDYLGSIMALGINRNKIGDLILRDD-GCYVAVHHSIIDFLINNLNKIR 147
Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSLASL 276
N++ C I L E P + I S R+D + +A +SRSK ++ I S+
Sbjct: 148 NLNCKCEIIYDLD-EIPKPSYEEKNIIVTSKRLDCIVAALGNISRSKALDAINSGSVLLD 206
Query: 277 VQISAKAS 284
+I+ S
Sbjct: 207 YRITKDKS 214
>gi|420161635|ref|ZP_14668399.1| ribosomal protein S4e [Weissella koreensis KCTC 3621]
gi|420161741|ref|ZP_14668503.1| ribosomal protein S4e [Weissella koreensis KCTC 3621]
gi|394744748|gb|EJF33667.1| ribosomal protein S4e [Weissella koreensis KCTC 3621]
gi|394745173|gb|EJF34069.1| ribosomal protein S4e [Weissella koreensis KCTC 3621]
Length = 263
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 93/195 (47%), Gaps = 13/195 (6%)
Query: 87 MARRASSRREVLHSDFLTPPVLKESMMALEKL----ADVKAVAQGGYPQAERCR--LSVG 140
+ R+A + +DFL P LE L ++K GGY AE R L
Sbjct: 23 LLRQAHDEYRPILTDFLNP----RQRYILETLINGDDEIKVNFWGGYEDAESQRGLLVPS 78
Query: 141 HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLV 200
+ + +D D+ + I F H D LG+++ +G+ R +IGDII +K Q +V
Sbjct: 79 YYDWNINDFDL-KVIQINYPIKFAELHHSDILGALINSGLQRNRIGDIITDEQKNWQIIV 137
Query: 201 VPELADYLITS--LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
+A ++ S LE++G V V + + + + +T+ ASLR+D + + G+
Sbjct: 138 TNPIAQFVQQSPDLERIGRVKVRYLEVDIRDVLHPLQDYLLEETLAASLRLDIIVANGYN 197
Query: 259 LSRSKLVNLIRYSSL 273
+SRSK LI + S+
Sbjct: 198 ISRSKAKELIEHGSV 212
>gi|332686279|ref|YP_004456053.1| hypothetical protein MPTP_0778 [Melissococcus plutonius ATCC 35311]
gi|379727687|ref|YP_005319872.1| hypothetical protein MPD5_1157 [Melissococcus plutonius DAT561]
gi|332370288|dbj|BAK21244.1| hypothetical protein, contains S4-like RNA binding domain
[Melissococcus plutonius ATCC 35311]
gi|376318590|dbj|BAL62377.1| hypothetical protein MPD5_1157 [Melissococcus plutonius DAT561]
Length = 256
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 87/183 (47%), Gaps = 10/183 (5%)
Query: 93 SRREVLHSDFLTPPVLKESMMALEKLA----DVKAVAQGGYPQAERCRLSVGHPEALTSD 148
S+ E+ +S +LT + LE L D+ GGY AER R + S+
Sbjct: 21 SKVELYYSPYLTNFLDPRQAYILETLVHQNNDLLYKFYGGYENAERQRCMIYPSYYQPSE 80
Query: 149 PDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADY 207
D ++ + IT F SHG LG+++ GI RE GDII G K Q + E+ Y
Sbjct: 81 EDFKISLVEITYPIKFATLSHGKILGTLVNMGIKREYFGDIISNGTK-WQIFIGNEIESY 139
Query: 208 LITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE--ASLRVDALASAGFKLSRSKLV 265
+I L+++G SV ++ E P+ + I+ +SLR+D L SA + +SR
Sbjct: 140 IINQLDRIGKTSVYLSKKE--DTELIVPKDNWIQEIDTVSSLRLDNLISAVYNISRQHSK 197
Query: 266 NLI 268
LI
Sbjct: 198 KLI 200
>gi|336434971|ref|ZP_08614689.1| hypothetical protein HMPREF0988_00274 [Lachnospiraceae bacterium
1_4_56FAA]
gi|336001864|gb|EGN31991.1| hypothetical protein HMPREF0988_00274 [Lachnospiraceae bacterium
1_4_56FAA]
Length = 259
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 98/203 (48%), Gaps = 24/203 (11%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ----GGYPQAERCRL 137
K +LE++R A R + +SDFL P + L L +Q GGY AER ++
Sbjct: 10 KRLLELSRLAYHRDIITYSDFLNP----NELHILHSLPKDSLYSQYRVFGGYELAER-QM 64
Query: 138 SVGHPEALTSD---------PDIVAALSIT---GNFGFQPCSHGDFLGSILGTGIAREKI 185
P+AL+ PD + L I + + +H D+LG++L GI R K
Sbjct: 65 VAFLPDALSLRTENLQELFFPDEMCVLRIEPLHKKYA-EELTHRDYLGAMLNLGIDRSKT 123
Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
GDI++ E GA V P++ ++L L ++ + +V T Y PR + + A
Sbjct: 124 GDILV-NESGALVFVRPQMKEFLREELTRIRHTTVLVTEEQPETFHY-TPRFEEIRGTVA 181
Query: 246 SLRVDALASAGFKLSRSKLVNLI 268
S+R+D+L S F SR+KL LI
Sbjct: 182 SIRLDSLLSLAFGSSRNKLSGLI 204
>gi|384512698|ref|YP_005707791.1| S4 domain-containing protein YlmH [Enterococcus faecalis OG1RF]
gi|430361444|ref|ZP_19426664.1| S4 domain-containing protein [Enterococcus faecalis OG1X]
gi|430368036|ref|ZP_19428018.1| S4 domain-containing protein [Enterococcus faecalis M7]
gi|327534587|gb|AEA93421.1| S4 domain-containing protein YlmH [Enterococcus faecalis OG1RF]
gi|429512465|gb|ELA02071.1| S4 domain-containing protein [Enterococcus faecalis OG1X]
gi|429516541|gb|ELA06031.1| S4 domain-containing protein [Enterococcus faecalis M7]
Length = 260
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 81/170 (47%), Gaps = 2/170 (1%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
+DFL P + + +D+ GGY QAER R + + + D V I
Sbjct: 36 TDFLDPRQAYILETLIRQNSDLSFTFYGGYEQAERKRCLIYPVYYIPEETDFGVVLFEII 95
Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 218
F SHG LG+++ G+ RE GDII G+K Q + E+A +++ ++K+G +
Sbjct: 96 YPSKFATLSHGKILGTLMNVGVRREAFGDIISDGDK-WQVFIAQEVAGFVVNQVDKIGKI 154
Query: 219 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+V + + +T +SLR+D++ SA F +SR + LI
Sbjct: 155 TVRLEERDYTQILIPKDGWQEERTTMSSLRLDSVISAVFNISRQRSKQLI 204
>gi|254556999|ref|YP_003063416.1| cell division protein () [Lactobacillus plantarum JDM1]
gi|300768837|ref|ZP_07078731.1| S4 domain-containing protein YlmH [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|308180991|ref|YP_003925119.1| cell division protein () [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|380032932|ref|YP_004889923.1| cell division protein, RNA-binding S4 domain-containing protein
[Lactobacillus plantarum WCFS1]
gi|418275728|ref|ZP_12891051.1| cell division protein, RNA-binding S4 domain-containing protein
[Lactobacillus plantarum subsp. plantarum NC8]
gi|448821702|ref|YP_007414864.1| Cell division protein, RNA-binding S4 domain-containing protein
[Lactobacillus plantarum ZJ316]
gi|254045926|gb|ACT62719.1| cell division protein (putative) [Lactobacillus plantarum JDM1]
gi|300493570|gb|EFK28744.1| S4 domain-containing protein YlmH [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|308046482|gb|ADN99025.1| cell division protein (putative) [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|342242175|emb|CCC79409.1| cell division protein, RNA-binding S4 domain-containing protein
[Lactobacillus plantarum WCFS1]
gi|376009279|gb|EHS82608.1| cell division protein, RNA-binding S4 domain-containing protein
[Lactobacillus plantarum subsp. plantarum NC8]
gi|448275199|gb|AGE39718.1| Cell division protein, RNA-binding S4 domain-containing protein
[Lactobacillus plantarum ZJ316]
Length = 261
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 98/209 (46%), Gaps = 13/209 (6%)
Query: 66 DDLLKGVGDKNA--IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKA 123
D+L + D A IE+V L R+ + + + + FL P + + + +L DV+
Sbjct: 3 DNLKQHFRDSEAPFIEQVTGWL---RQVADQYRPILTAFLNPRQIYIAQTLVNQLDDVRM 59
Query: 124 VAQGGYPQAERCRLSVGHPEALTSDPDI----VAALSITGNFGFQPCSHGDFLGSILGTG 179
A GG+ AE R+ + +P + +P++ + +I F HG LG++ G
Sbjct: 60 RASGGFEGAELQRI-LFYP--VYYEPEVADFQITLFNIVYPVKFATLKHGQILGTLANAG 116
Query: 180 IAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKS 239
+ R+ GDI+ G QF+ E+A Y +++ G V T +PL A+ ++
Sbjct: 117 VERDVFGDIVTDGTTW-QFVCETEMASYFEEQIDRFGKTKVHLTAVPLSAVITPEDDWEA 175
Query: 240 FKTIEASLRVDALASAGFKLSRSKLVNLI 268
T +SLR D++ A F LSR LI
Sbjct: 176 VTTTVSSLRADSIIKAAFNLSRHHAKELI 204
>gi|424671133|ref|ZP_18108148.1| S4 domain protein [Enterococcus faecalis 599]
gi|402359693|gb|EJU94318.1| S4 domain protein [Enterococcus faecalis 599]
Length = 260
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 81/170 (47%), Gaps = 2/170 (1%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
+DFL P + + +D+ GGY QAER R + + + D V I
Sbjct: 36 TDFLDPRQAYILETLIRQNSDLSFTFYGGYEQAERKRCLIYPAYYIPEETDFGVVLFEII 95
Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 218
F SHG LG+++ G+ RE GDII G+K Q + E+A +++ ++K+G +
Sbjct: 96 YPSKFATLSHGKILGTLMNVGVRREAFGDIISDGDK-WQVFIAQEVAGFVVKKVDKIGKI 154
Query: 219 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+V + + +T +SLR+D++ SA F +SR + LI
Sbjct: 155 TVRLEERDYTQILIPKDGWQEERTTMSSLRLDSVISAVFNISRQRSKQLI 204
>gi|335040583|ref|ZP_08533709.1| RNA-binding S4 domain protein [Caldalkalibacillus thermarum TA2.A1]
gi|334179553|gb|EGL82192.1| RNA-binding S4 domain protein [Caldalkalibacillus thermarum TA2.A1]
Length = 257
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 98/198 (49%), Gaps = 14/198 (7%)
Query: 79 EEVKHILEMARRASSRREVLH---SDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQA 132
EE + MA A RE H + FL P +E ++ + DVK GG+ QA
Sbjct: 11 EERPFVERMAEWAELVRERHHPRLTPFLNP---REQLIIRSVVGHAPDVKVKLWGGFQQA 67
Query: 133 ERCRLSVGHPEAL--TSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
ER R + P+ L T D +A L+I + + +H D LGS+LG G+ RE +GDI++
Sbjct: 68 ERKRAWII-PDYLDVTWDEFQLALLNIKAS-QWVNVTHRDVLGSLLGMGLKREVVGDILI 125
Query: 191 QGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVD 250
E Q +VV E+ +Y+ L ++G V + AL ++ I +SLR+D
Sbjct: 126 TPE-TIQVIVVREMEEYIRLHLTRIGRHQVRAEKADWSALTVPEEEWQAVTAIVSSLRLD 184
Query: 251 ALASAGFKLSRSKLVNLI 268
+ + + SR+K V LI
Sbjct: 185 VIVAECTRQSRAKAVQLI 202
>gi|257870264|ref|ZP_05649917.1| S4 domain-containing protein [Enterococcus gallinarum EG2]
gi|357050529|ref|ZP_09111727.1| hypothetical protein HMPREF9478_01710 [Enterococcus saccharolyticus
30_1]
gi|257804428|gb|EEV33250.1| S4 domain-containing protein [Enterococcus gallinarum EG2]
gi|355381182|gb|EHG28309.1| hypothetical protein HMPREF9478_01710 [Enterococcus saccharolyticus
30_1]
Length = 260
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 86/173 (49%), Gaps = 8/173 (4%)
Query: 100 SDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVAAL 155
+DFL P + ES+ + + D+ GGY AER C + + + + + D+V
Sbjct: 36 TDFLDPRQAYILESL--IRQSTDLSFQFFGGYEAAERRRCLIYPDYYQPASEEFDLVL-F 92
Query: 156 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 215
+I F SHG LG+++GTG+ RE GDII GE Q V E++ ++ T ++K+
Sbjct: 93 TIIYPKKFTVLSHGKVLGTLMGTGVKREYFGDIISDGE-NWQVFVASEISHFVQTQVDKI 151
Query: 216 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
GNVSV L + +SLR+D + SA + +SR + LI
Sbjct: 152 GNVSVRLEETKYTELIVPKDGWSEERETVSSLRLDTVISAVYNISRQRSKQLI 204
>gi|428279135|ref|YP_005560870.1| hypothetical protein BSNT_02544 [Bacillus subtilis subsp. natto
BEST195]
gi|291484092|dbj|BAI85167.1| hypothetical protein BSNT_02544 [Bacillus subtilis subsp. natto
BEST195]
Length = 257
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 96/195 (49%), Gaps = 13/195 (6%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLS 138
+ LE R + + +DFL P +E ++ A+ ADV GGY +AER R +
Sbjct: 16 IDQALEWKRIVQEQYRMKLTDFLDP---REQVILSAVTGQADVGLAFSGGYDRAERKR-A 71
Query: 139 VGHPEALTSDPDI----VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEK 194
+ +PE +T P++ + A ++ F H LG+++G G+ R+K GDI+ E
Sbjct: 72 ILYPEYIT--PEVSDFELQAFNVCYADKFVSVDHRSLLGALMGIGLKRQKFGDIVF-SET 128
Query: 195 GAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALAS 254
Q +V + AD++ L + G +VS +I L L + +SLR+DA+ +
Sbjct: 129 AVQLIVSADTADFVAAQLTQAGKAAVSLEKIDLSDLNIPAVDVEIRDDTVSSLRLDAVCA 188
Query: 255 AGFKLSRSKLVNLIR 269
+ + SR K L++
Sbjct: 189 SMSRQSRQKSQTLVK 203
>gi|342732562|ref|YP_004771401.1| RNA-binding S4 domain-containing protein [Candidatus Arthromitus
sp. SFB-mouse-Japan]
gi|384455957|ref|YP_005668552.1| S4 domain-containing protein [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|417960523|ref|ZP_12603108.1| hypothetical protein SFB1_326G3 [Candidatus Arthromitus sp. SFB-1]
gi|417960704|ref|ZP_12603246.1| hypothetical protein SFB2_000G5 [Candidatus Arthromitus sp. SFB-2]
gi|417965490|ref|ZP_12607008.1| hypothetical protein SFB4_249G1 [Candidatus Arthromitus sp. SFB-4]
gi|417967085|ref|ZP_12608281.1| RNA-binding S4 domain protein [Candidatus Arthromitus sp. SFB-5]
gi|417969082|ref|ZP_12610044.1| RNA-binding S4 domain protein [Candidatus Arthromitus sp. SFB-co]
gi|418016032|ref|ZP_12655597.1| S4 domain-containing protein [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|418372818|ref|ZP_12964910.1| RNA-binding S4 domain protein [Candidatus Arthromitus sp.
SFB-mouse-SU]
gi|342330017|dbj|BAK56659.1| RNA-binding S4 domain protein [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|345506367|gb|EGX28661.1| S4 domain-containing protein [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|346984300|dbj|BAK79976.1| S4 domain protein [Candidatus Arthromitus sp. SFB-mouse-Yit]
gi|380330842|gb|EIA22005.1| hypothetical protein SFB1_326G3 [Candidatus Arthromitus sp. SFB-1]
gi|380335279|gb|EIA25512.1| hypothetical protein SFB2_000G5 [Candidatus Arthromitus sp. SFB-2]
gi|380337448|gb|EIA26502.1| hypothetical protein SFB4_249G1 [Candidatus Arthromitus sp. SFB-4]
gi|380338195|gb|EIA27122.1| RNA-binding S4 domain protein [Candidatus Arthromitus sp. SFB-5]
gi|380338451|gb|EIA27338.1| RNA-binding S4 domain protein [Candidatus Arthromitus sp. SFB-co]
gi|380342487|gb|EIA30932.1| RNA-binding S4 domain protein [Candidatus Arthromitus sp.
SFB-mouse-SU]
Length = 258
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 98/208 (47%), Gaps = 24/208 (11%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRA-SSRREVLHSDFLTPPVLKESMMALEKLADVKAV 124
+D +K G N+IE+ + + A S R ++ ++F T V L+ K +
Sbjct: 5 NDFIKSCG--NSIEDADKLFSLYVSALKSGRTIVTNEFYTINVCN----TLKNFLSSKEL 58
Query: 125 AQGGY---PQAERCRLSVGHPEALTSDPDIVA-ALSITGNFGFQPCSHGDFLGSILGTGI 180
GY AERC ++ S D A + I+ N F SH DFLGSI+ G
Sbjct: 59 NVSGYGFSDDAERCLIAFSLASIDVSIFDNAAKVVKISYNDKFSKLSHRDFLGSIMSLGF 118
Query: 181 AREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG----NVSVSC-TRIPLLALEYEPP 235
+REKIGD++++G VV + +Y++ +L KV NV+V R+P
Sbjct: 119 SREKIGDLVIEGN-CVYTPVVSDFVNYIVQNLTKVRYSPVNVTVELFNRLP-------QK 170
Query: 236 RTKSFKTIEASLRVDALASAGFKLSRSK 263
R + I +SLR+D + S+ LSR K
Sbjct: 171 RFEILYKIVSSLRIDNIVSSLINLSRDK 198
>gi|336421662|ref|ZP_08601818.1| hypothetical protein HMPREF0993_01195 [Lachnospiraceae bacterium
5_1_57FAA]
gi|336000133|gb|EGN30286.1| hypothetical protein HMPREF0993_01195 [Lachnospiraceae bacterium
5_1_57FAA]
Length = 251
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 95/190 (50%), Gaps = 6/190 (3%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
K + E++R A +R V S+FL L + + GGY +ER +++
Sbjct: 10 KRLAELSRIAYTREIVTFSEFLNLNELNILHTTPKDMLLSHYKTYGGYGLSER-QMAAFL 68
Query: 142 PEALTSD---PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
P+AL D P + +S + SH D+LG+++ GI R K+GDI+++ K F
Sbjct: 69 PDALYYDYQYPIQIIEISPVNRKFAEELSHRDYLGAVMNLGIERCKLGDILIEDGKAILF 128
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
ELA Y++ L ++ + +V + + YE PR + K AS+R+D + S +
Sbjct: 129 -AKEELAGYIMEHLTRIRHTTVKTSILSAFEDSYE-PRYEELKGTVASVRLDTVLSLAYP 186
Query: 259 LSRSKLVNLI 268
LSRSK+ LI
Sbjct: 187 LSRSKITGLI 196
>gi|321315306|ref|YP_004207593.1| shape determination protein [Bacillus subtilis BSn5]
gi|449094234|ref|YP_007426725.1| factor involved in shape determination, RNA-binding fold protein
[Bacillus subtilis XF-1]
gi|320021580|gb|ADV96566.1| factor involved in shape determination, RNA-binding fold protein
[Bacillus subtilis BSn5]
gi|449028149|gb|AGE63388.1| factor involved in shape determination, RNA-binding fold protein
[Bacillus subtilis XF-1]
Length = 257
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 96/194 (49%), Gaps = 11/194 (5%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLS 138
+ LE R + + +DFL P +E ++ A+ ADV GGY +AER R +
Sbjct: 16 IDQALEWKRIVQEQYRMKLTDFLDP---REQVILSAVTGQADVGLAFSGGYDRAERKR-A 71
Query: 139 VGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
+ +PE +T SD ++ A ++ F H LG+++G G+ R+K GDI+ E
Sbjct: 72 ILYPEYITPEESDFEL-QAFNVRYADKFVSVDHRSLLGALMGIGLKRQKFGDIVF-SETA 129
Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASA 255
Q +V + AD++ L + G +VS +I L L + +SLR+DA+ ++
Sbjct: 130 VQLIVSADTADFVAAQLTQAGKAAVSLEKIDLSDLNIPAVDVEIRDDTVSSLRLDAVCAS 189
Query: 256 GFKLSRSKLVNLIR 269
+ SR K L++
Sbjct: 190 MSRQSRQKSQTLVK 203
>gi|410458071|ref|ZP_11311835.1| RNA-binding S4 domain-containing protein [Bacillus azotoformans LMG
9581]
gi|409931896|gb|EKN68870.1| RNA-binding S4 domain-containing protein [Bacillus azotoformans LMG
9581]
Length = 257
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 8/206 (3%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCR--LS 138
+ I+E + ++ DF P + + +VK GGY QAER R L
Sbjct: 15 IDQIIEWREQVANEYTYKLLDFYDPREIDIVQRIIGSKEEVKCAFWGGYDQAERKRAILY 74
Query: 139 VGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+ E D DIV SI F H LGS +G G+ R K GDII+ + AQ
Sbjct: 75 PEYYEVQNEDFDIVV-FSINFPSKFVTLDHRKVLGSTMGLGLKRSKFGDIIIDKD-AAQI 132
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
+V ++A+Y+ ++VG +V+ +I + +S+R+D + + F
Sbjct: 133 IVASQVAEYVRLHFKQVGKTNVTLEQIECENIISMNEEWHEHTCTVSSMRLDVILAEVFN 192
Query: 259 LSRSKLVNLIRYSSLASLVQISAKAS 284
LSR+K++ I+ +V+++ K +
Sbjct: 193 LSRTKVLPYIQ----NQMVKVNWKVT 214
>gi|291563464|emb|CBL42280.1| Uncharacterized conserved protein, contains S4-like domain
[butyrate-producing bacterium SS3/4]
Length = 251
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 101/193 (52%), Gaps = 12/193 (6%)
Query: 82 KHILEMARRASSRREVLHSDFLT--PPVLKESMMALEKLADVKAVAQGGYPQAER---CR 136
K I E+A A SR LH+DFLT + ++M A L VK V GG+P +ER C
Sbjct: 10 KRIQELAENAYSRDIPLHTDFLTLAEQTVFQNMSA--TLPPVKFVLSGGFPMSERKVLCF 67
Query: 137 LSVGHPEALTSDPDIVAALSITGNFGF-QPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
L+ + E L + P + + + N F + +H D+LG+I+ GI R IGDI+LQ +
Sbjct: 68 LA-SYEEELYAPPFVCLKI-VPANRRFAEELTHRDYLGAIMNLGIERAMIGDIVLQ-DGN 124
Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASA 255
A V+ +++ YL +L + + SV T I E P + +S+R+D++ +
Sbjct: 125 AWAFVMEKMSRYLAENLTMIRHTSV-VTEITADFSELPEPEMEEISGTVSSVRLDSVIAL 183
Query: 256 GFKLSRSKLVNLI 268
+LSR++ + I
Sbjct: 184 CGRLSRTRAASYI 196
>gi|430755976|ref|YP_007209756.1| hypothetical protein A7A1_0484 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|430020496|gb|AGA21102.1| Hypothetical protein YlmH [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 257
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 96/194 (49%), Gaps = 11/194 (5%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLS 138
+ LE R + + +DFL P +E ++ A+ ADV GGY +AER R +
Sbjct: 16 IDQALEWKRIVQEQYRMKLTDFLDP---REQVILSAVTGQADVGLAFSGGYNRAERKR-A 71
Query: 139 VGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
+ +PE +T SD ++ A ++ F H LG+++G G+ R+K GDI+ E
Sbjct: 72 ILYPEYITPEESDFEL-QAFNVRYADKFVSVDHRSLLGALMGIGLKRQKFGDIVF-SETA 129
Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASA 255
Q +V + AD++ L + G +VS +I L L + +SLR+DA+ ++
Sbjct: 130 VQLIVSADTADFVAAQLTQAGKAAVSLEKIDLSDLNIPAVDVEIRDDTVSSLRLDAVCAS 189
Query: 256 GFKLSRSKLVNLIR 269
+ SR K L++
Sbjct: 190 MSRQSRQKSQTLVK 203
>gi|373462939|ref|ZP_09554600.1| S4 domain protein [Lactobacillus kisonensis F0435]
gi|371765759|gb|EHO54063.1| S4 domain protein [Lactobacillus kisonensis F0435]
Length = 193
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
+ A I F SHG LGSI+G GI R+ IGDII G QF+ E+ADY+
Sbjct: 20 ITAFQIDYPSKFATLSHGQILGSIMGAGIDRDVIGDIITDG-PNWQFMCESEMADYVRVQ 78
Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSR 261
++KVG + V I + + +++ T +SLRVD L S GF +SR
Sbjct: 79 VDKVGKIKVKLKPIEPDQIIHPVDESEAVTTTVSSLRVDTLISEGFHISR 128
>gi|239826539|ref|YP_002949163.1| RNA-binding S4 domain-containing protein [Geobacillus sp. WCH70]
gi|239806832|gb|ACS23897.1| RNA-binding S4 domain protein [Geobacillus sp. WCH70]
Length = 257
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 82/170 (48%), Gaps = 2/170 (1%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
+DFL P + + + +V+ GG P ER R + P +D D +A +
Sbjct: 34 TDFLDPREQQIVQSVIGRDEEVRIAFFGGAPFVERKRALLFPPYFQPADEDYEIALFEVH 93
Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 218
F H LG+++ G+ R K GDI+++ E+ QFL E+ADY+ L +G
Sbjct: 94 YPSKFISLEHRQVLGALMSLGLRRGKFGDILMKEER-VQFLAANEVADYIRLHLHAIGKA 152
Query: 219 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+VS + PL + + + +SLR+DA+ S F +SR K+ + I
Sbjct: 153 NVSVEKRPLTEIITLEEKWQDTTITASSLRLDAILSQAFHVSRQKIQSFI 202
>gi|152976258|ref|YP_001375775.1| RNA-binding S4 domain-containing protein [Bacillus cytotoxicus NVH
391-98]
gi|152025010|gb|ABS22780.1| RNA-binding S4 domain protein [Bacillus cytotoxicus NVH 391-98]
Length = 257
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 97/206 (47%), Gaps = 10/206 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE R +V +DFL P + + + DV G P+AER R ++
Sbjct: 15 VDKVLEWERAVEEYHQVKLTDFLDPRQQQIVTTIVGQQGDVSLQFNGAAPKAERKR-ALI 73
Query: 141 HPE--ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P+ AL + V L I F H LG+++ G+ REK GDI +Q E Q
Sbjct: 74 YPDYLALNEEEFQVEVLEIDYPSKFYTLEHRQILGALMSLGLKREKYGDIFIQ-ENRVQI 132
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLL-ALEYEPPRTKSFKTIEASLRVDALASAGF 257
+V E+ Y+ +L+ +G VS + L+ + + F T+ +SLR+D + +
Sbjct: 133 VVAKEVVSYIEMNLQSIGKTKVSLFSVSAENVLQLQDEWREQFGTV-SSLRLDVVLAEIL 191
Query: 258 KLSRSKLVNLIRYSSLASLVQISAKA 283
LSR K+ LI+ LV+++ K
Sbjct: 192 HLSRQKVQPLIK----NGLVKVNWKV 213
>gi|384175283|ref|YP_005556668.1| S4 domain protein [Bacillus subtilis subsp. subtilis str. RO-NN-1]
gi|349594507|gb|AEP90694.1| S4 domain protein [Bacillus subtilis subsp. subtilis str. RO-NN-1]
Length = 257
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 96/194 (49%), Gaps = 11/194 (5%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLS 138
+ LE R + + +DFL P +E ++ A+ ADV GGY +AER R +
Sbjct: 16 IDQALEWKRIVQEQYRMKLTDFLDP---REQVILSAVTGQADVGLAFSGGYNRAERKR-A 71
Query: 139 VGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
+ +PE +T SD ++ A ++ F H LG+++G G+ R+K GDI+ E
Sbjct: 72 ILYPEYITPEESDFEL-QAFNVRYADKFVSVDHRSLLGALMGIGLKRQKFGDIVF-SETA 129
Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASA 255
Q +V + AD++ L + G +VS +I L L + +SLR+DA+ ++
Sbjct: 130 VQLIVSADTADFVAAQLTQAGKAAVSLEKIDLSDLNIPAIDVEIRDDTVSSLRLDAVCAS 189
Query: 256 GFKLSRSKLVNLIR 269
+ SR K L++
Sbjct: 190 MSRQSRQKSQTLVK 203
>gi|347525731|ref|YP_004832479.1| RNA binding protein [Lactobacillus ruminis ATCC 27782]
gi|345284690|gb|AEN78543.1| RNA binding protein [Lactobacillus ruminis ATCC 27782]
Length = 261
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 92/197 (46%), Gaps = 4/197 (2%)
Query: 90 RASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SD 148
RA + + FL P + + + + DVK GG+ +ER R+ + +PE D
Sbjct: 25 RAKDEYRPILTHFLNPRQHFIADVLIGRFDDVKLKTFGGFLGSERKRI-LFYPEYYEPQD 83
Query: 149 PDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADY 207
D ++ L I F H LG++ G+ R+ IGDII G K QF E+ Y
Sbjct: 84 NDFSMSLLEINYPVKFAKLEHRTILGTLANCGLERDVIGDIITDGTKW-QFFCEKEIEPY 142
Query: 208 LITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNL 267
L+ +++KVG V V IPL I +SLR D L S+ + LSR + +L
Sbjct: 143 LLENIDKVGKVKVKLGEIPLQNAVSPIEEWDHATVILSSLRCDVLISSVYNLSRKHVKDL 202
Query: 268 IRYSSLASLVQISAKAS 284
++ + ++ I +KA
Sbjct: 203 LQTNKVSLNWMIFSKAD 219
>gi|422699560|ref|ZP_16757424.1| S4 domain protein [Enterococcus faecalis TX1342]
gi|315171938|gb|EFU15955.1| S4 domain protein [Enterococcus faecalis TX1342]
Length = 260
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 81/170 (47%), Gaps = 2/170 (1%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
+DFL P + + +D+ GGY QAER R + + + D V I
Sbjct: 36 TDFLDPRQAYILETLIRQNSDLSFTFYGGYEQAERKRCLIYPAYYIPEETDFGVVLFEII 95
Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 218
F SHG LG+++ G+ RE G+II G+K Q + E+A +++ ++K+G +
Sbjct: 96 YPSKFATLSHGKILGTLMNVGVRREAFGNIISDGDK-WQVFIAQEVAGFVVNQVDKIGKI 154
Query: 219 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+V + + +T +SLR+D++ SA F +SR + LI
Sbjct: 155 TVRLEERDYTQILIPKDGWQEERTTMSSLRLDSVISAVFNISRQRSKQLI 204
>gi|293400860|ref|ZP_06645005.1| YlmH protein [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291305886|gb|EFE47130.1| YlmH protein [Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 251
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 98/201 (48%), Gaps = 12/201 (5%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA-DVKAVAQGGYPQAERCRLSV 139
VK I ++ RR ++ + F P E + L + GGY AERCR ++
Sbjct: 15 VKRIYDLIDLMERRRRIVVTPFFAPD---ECNICDAILGHQIPYRKSGGYQGAERCRYAL 71
Query: 140 GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFL 199
E +D I L T + F +H D LG+IL GI REKIGD+I++ + F
Sbjct: 72 LPYEDELADLKI-TILKATYSPQFGKLAHPDVLGAILNLGIEREKIGDLIVKDNELIIF- 129
Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
V E+ +Y++ +L ++ +V R + YEP K + +SLR+D L S+ +
Sbjct: 130 VDEEIENYIVCNLTRIKRSNVHFKRYE-GEVTYEPKIRYEHKIV-SSLRLDVLVSSFANI 187
Query: 260 SRSKLVNLIRYSSLASLVQIS 280
SR K LIR A LV+++
Sbjct: 188 SRKKAQELIR----AGLVKVN 204
>gi|238916862|ref|YP_002930379.1| hypothetical protein EUBELI_00931 [Eubacterium eligens ATCC 27750]
gi|238872222|gb|ACR71932.1| Hypothetical protein EUBELI_00931 [Eubacterium eligens ATCC 27750]
Length = 251
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 98/192 (51%), Gaps = 11/192 (5%)
Query: 84 ILEMARRASSRREVLHSDFLTPPVLKESMMALEK--LADVKAVAQGGYPQAERCRLSVGH 141
I++ A R+ + +++FL + ++S+ A K L V GG ER + G
Sbjct: 11 IMDAANRSFRQNIYTYTNFL--DINEQSVFAQMKNPLNFVAFKTYGGNDACERQMIQFGS 68
Query: 142 PEALTSDPDI-VAALSIT---GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
E L + + + + I+ + + SH D+LG+++ GI RE +GDI ++G K A
Sbjct: 69 FETLGYEEEFPITLIKISPLIEKYA-ESLSHRDYLGALMNLGIKREMLGDINIKG-KDAY 126
Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
V +AD++I +L V + + CT+ + +E P + + + AS R+DA ++
Sbjct: 127 LYCVSHIADFIIDNLSTVKHTHIQCTKTDINDIEC-SPELEDIEVLSASERIDAAVASLT 185
Query: 258 KLSRSKLVNLIR 269
KLSRS+ V L R
Sbjct: 186 KLSRSQAVELFR 197
>gi|339634154|ref|YP_004725795.1| RNA-binding S4 domain-containing protein [Weissella koreensis KACC
15510]
gi|338853950|gb|AEJ23116.1| RNA-binding S4 domain-containing protein [Weissella koreensis KACC
15510]
Length = 263
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 93/195 (47%), Gaps = 13/195 (6%)
Query: 87 MARRASSRREVLHSDFLTPPVLKESMMALEKLAD----VKAVAQGGYPQAERCR--LSVG 140
+ R+A + ++FL P LE L + +K GGY AE R L
Sbjct: 23 LLRQAHDEYRPILTNFLNP----RQRYILETLINGDDEIKVNFWGGYEDAESQRGLLVPS 78
Query: 141 HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLV 200
+ + +D D+ + I F H D LG+++ +G+ R +IGDII +K Q +V
Sbjct: 79 YYDWNINDFDL-KVIQINYPIKFAELHHSDILGALINSGLQRNRIGDIITDEQKNWQIIV 137
Query: 201 VPELADYLITS--LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
+A ++ S LE++G V V + + + + +T+ ASLR+D + + G+
Sbjct: 138 TNPIAQFVQQSPDLERIGRVKVRYLEVDIRDVLHPLQDYLLEETLAASLRLDIIVANGYN 197
Query: 259 LSRSKLVNLIRYSSL 273
+SRSK LI + S+
Sbjct: 198 ISRSKAKELIEHGSV 212
>gi|422739827|ref|ZP_16794993.1| S4 domain protein [Enterococcus faecalis TX2141]
gi|315144386|gb|EFT88402.1| S4 domain protein [Enterococcus faecalis TX2141]
Length = 260
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 80/170 (47%), Gaps = 2/170 (1%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
+DFL P + + +D+ G Y QAER R + + + D V I
Sbjct: 36 TDFLDPRQAYILETLIRQNSDLSFTFYGSYEQAERKRCLIYPAYYMPQETDFGVVLFEII 95
Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 218
F SHG LG+++ G+ RE GDII G+K Q + E+A +++ ++K+G +
Sbjct: 96 YPSKFATLSHGKILGTLMNVGVRREAFGDIISDGDK-WQVFIAQEVAGFVVNQVDKIGKI 154
Query: 219 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+V + + +T +SLR+D++ SA F +SR + LI
Sbjct: 155 TVRLEERDYTQILIPKDGWQEERTTMSSLRLDSVISAVFNISRQRSKQLI 204
>gi|300859623|ref|ZP_07105711.1| S4 domain protein [Enterococcus faecalis TUSoD Ef11]
gi|422730879|ref|ZP_16787260.1| S4 domain protein [Enterococcus faecalis TX0645]
gi|428766509|ref|YP_007152620.1| S4 domain protein [Enterococcus faecalis str. Symbioflor 1]
gi|300850441|gb|EFK78190.1| S4 domain protein [Enterococcus faecalis TUSoD Ef11]
gi|315162934|gb|EFU06951.1| S4 domain protein [Enterococcus faecalis TX0645]
gi|427184682|emb|CCO71906.1| S4 domain protein [Enterococcus faecalis str. Symbioflor 1]
Length = 260
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 80/170 (47%), Gaps = 2/170 (1%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
+DFL P + + +D+ G Y QAER R + + + D V I
Sbjct: 36 TDFLDPRQAYILETLIRQNSDLSFTFYGSYEQAERKRCLIYPAYYMPEETDFGVVLFEII 95
Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 218
F SHG LG+++ G+ RE GDII G+K Q + E+A +++ ++K+G +
Sbjct: 96 YPSKFATLSHGKILGTLMNVGVRREAFGDIISDGDK-WQVFIAQEVAGFVVNQVDKIGKI 154
Query: 219 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+V + + +T +SLR+D++ SA F +SR + LI
Sbjct: 155 TVRLEERDYTQILIPKDGWQEERTTMSSLRLDSVISAVFNISRQRSKQLI 204
>gi|387927110|ref|ZP_10129789.1| RNA-binding S4 domain protein [Bacillus methanolicus PB1]
gi|387589254|gb|EIJ81574.1| RNA-binding S4 domain protein [Bacillus methanolicus PB1]
Length = 257
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 98/199 (49%), Gaps = 9/199 (4%)
Query: 74 DKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAE 133
+++ IE H E A + R +DFL P + + + ++ GG AE
Sbjct: 11 ERDFIERAIHWREFVETAFAPR---LTDFLDPREQQILKAVVGQSEEIHCHLFGGTGGAE 67
Query: 134 RCRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKIGDIILQ 191
R R +V P+ +D + N+ F H LGS++ G+ R K GDI+++
Sbjct: 68 RKR-AVICPDYYQADREDFEICLFEINYPKKFITIEHRQVLGSLMSLGLKRGKFGDILIE 126
Query: 192 GEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLL-ALEYEPPRTKSFKTIEASLRVD 250
G+ QF E+ADY+ L+ +G SV+ IPL A++ + + T+ +SLR+D
Sbjct: 127 GD-NVQFFAAKEIADYVSLQLDSIGKASVTICEIPLENAIQIKESWIEETSTV-SSLRLD 184
Query: 251 ALASAGFKLSRSKLVNLIR 269
A+ SA + LSR K +LI+
Sbjct: 185 AVISALYNLSRHKSQDLIK 203
>gi|104773831|ref|YP_618811.1| RNA binding protein [Lactobacillus delbrueckii subsp. bulgaricus
ATCC 11842]
gi|103422912|emb|CAI97574.1| Putative RNA binding protein [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
Length = 265
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 83/169 (49%), Gaps = 9/169 (5%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLSVG-HPEALTSDPDIVAALS 156
+DFL P +E +A +A+ Q GGY +AE+CRL + E L D V
Sbjct: 40 TDFLDP----RQRQIMETIAGGEAIVQAFGGYEEAEKCRLYISLEWENLRPDDYQVQLFE 95
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
I F H LGS+ +G+ + GDII G+ QF ELA + + ++++G
Sbjct: 96 IEYPQKFASLRHSQILGSLANSGVKTDTFGDIITDGQGRWQFFAEKELAGFFASQIDRMG 155
Query: 217 NVSVSCTRIPLL-ALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKL 264
V V PL +LE E ++ + +S+R+DA+ +A SRS++
Sbjct: 156 PVKVRLEEKPLKDSLEAE-DNSEIISAVASSMRLDAVLAALSNKSRSQV 203
>gi|313123447|ref|YP_004033706.1| cell division protein, s4-like domain [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
gi|312280010|gb|ADQ60729.1| Cell division protein, S4-like domain [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
Length = 265
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 7/168 (4%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLSVG-HPEALTSDPDIVAALS 156
+DFL P +E +A +A+ Q GGY +AE+CRL + E L D V
Sbjct: 40 TDFLDP----RQRQIMETIAGEEAIVQAFGGYEEAEKCRLYISLEWENLRPDDYHVQLFE 95
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
I F H LGS+ +G+ + GDII G+ QF ELA + + ++++G
Sbjct: 96 IEYPQKFASLRHSQILGSLANSGVKTDTFGDIITDGQGRWQFFAEKELAGFFASQIDRMG 155
Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKL 264
V V PL ++ + +S+R+DA+ +A SRS++
Sbjct: 156 PVKVRLEEKPLKDRLEAEDNSEIITAVASSMRLDAVLAALSNKSRSQV 203
>gi|253577876|ref|ZP_04855148.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251850194|gb|EES78152.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 250
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 99/194 (51%), Gaps = 12/194 (6%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMA---LEKLADVKAVAQGGYPQAERCRL 137
+K I E+A + R V SDFL L E + + + GGY AER ++
Sbjct: 8 LKRIRELANLSWQRDIVTFSDFLN---LNEQNIVSSLKHQFPQIVMETSGGYENAER-QM 63
Query: 138 SVGHPEALTSDPDI-VAALSITGN-FGF-QPCSHGDFLGSILGTGIAREKIGDIILQGEK 194
HP+AL + + L I F + SH D+LG++L G+ R IGDI++Q +K
Sbjct: 64 VAFHPDALAFTWEYPIDCLRIEPKALKFSEELSHRDYLGALLNLGVDRSVIGDIVVQ-KK 122
Query: 195 GAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALAS 254
A F ++ ++ + +L +V + ++ T++ + E+ P +S AS+R+D+L S
Sbjct: 123 AAWFFCQNKMTEFFLENLCRVRHTNILITKVE-DSDEFPRPVLESVSGTCASVRLDSLIS 181
Query: 255 AGFKLSRSKLVNLI 268
FK SRS +V+ I
Sbjct: 182 LAFKTSRSSMVSYI 195
>gi|366053398|ref|ZP_09451120.1| RNA-binding S4 domain-containing protein [Lactobacillus suebicus
KCTC 3549]
Length = 261
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 8/176 (4%)
Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI----VAALSI 157
F+ P + + + DV ++ GG+ AE RL + +P P+I + L +
Sbjct: 38 FMNPRQRYIAQTLVNRQDDVSILSNGGFSNAEMQRLLI-YPTYYQ--PEIEDFQIQVLDV 94
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
F H LG+++ GI RE GDII G K Q +V L+DY+ ++K+ N
Sbjct: 95 KYPEKFAEIKHRQILGTLVSQGIERETFGDIITDGHKW-QVMVEANLSDYIRVQVDKIAN 153
Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSL 273
+ V I L + + + +T +SLR+DA+ ++ F SR++ LI + +
Sbjct: 154 IRVQLIPISLDDVISQISDAEEIQTTVSSLRLDAIIASSFNYSRNRSKELIEHGKV 209
>gi|16078605|ref|NP_389424.1| hypothetical protein BSU15410 [Bacillus subtilis subsp. subtilis
str. 168]
gi|221309415|ref|ZP_03591262.1| hypothetical protein Bsubs1_08521 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221313740|ref|ZP_03595545.1| hypothetical protein BsubsN3_08457 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221318664|ref|ZP_03599958.1| hypothetical protein BsubsJ_08391 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221322937|ref|ZP_03604231.1| hypothetical protein BsubsS_08497 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|402775786|ref|YP_006629730.1| shape determination RNA-binding protein [Bacillus subtilis QB928]
gi|418033313|ref|ZP_12671790.1| hypothetical protein BSSC8_27340 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|452914017|ref|ZP_21962644.1| S4 domain protein [Bacillus subtilis MB73/2]
gi|81345679|sp|P71020.1|YLMH_BACSU RecName: Full=Putative RNA-binding protein YlmH
gi|1518679|gb|AAB49278.1| orf [Bacillus subtilis subsp. subtilis str. 168]
gi|2633914|emb|CAB13415.1| factor involved in shape determination, RNA-binding fold [Bacillus
subtilis subsp. subtilis str. 168]
gi|351469461|gb|EHA29637.1| hypothetical protein BSSC8_27340 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|402480969|gb|AFQ57478.1| Factor involved in shape determination, RNA-binding fold protein
[Bacillus subtilis QB928]
gi|407958948|dbj|BAM52188.1| shape determination protein [Synechocystis sp. PCC 6803]
gi|407964525|dbj|BAM57764.1| shape determination protein [Bacillus subtilis BEST7003]
gi|452116437|gb|EME06832.1| S4 domain protein [Bacillus subtilis MB73/2]
Length = 257
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 95/194 (48%), Gaps = 11/194 (5%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLS 138
+ LE R + + +DFL P +E ++ A+ ADV GGY +AER R +
Sbjct: 16 IDQALEWKRIVQEQYRMKLTDFLDP---REQVILSAVTGQADVGLAFSGGYDRAERKR-A 71
Query: 139 VGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
+ PE +T SD ++ A ++ F H LG+++G G+ R+K GDI+ E
Sbjct: 72 ILFPEYITPEESDFEL-QAFNVRYADKFVSVDHRSLLGALMGIGLKRQKFGDIVF-SETA 129
Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASA 255
Q +V + AD++ L + G +VS +I L L + +SLR+DA+ ++
Sbjct: 130 VQLIVSADTADFVAAQLTQAGKAAVSLEKIDLSDLNIPAVDVEIRDDTVSSLRLDAVCAS 189
Query: 256 GFKLSRSKLVNLIR 269
+ SR K L++
Sbjct: 190 MSRQSRQKSQTLVK 203
>gi|385815458|ref|YP_005851849.1| Cell-division protein [Lactobacillus delbrueckii subsp. bulgaricus
2038]
gi|325125495|gb|ADY84825.1| Cell-division protein [Lactobacillus delbrueckii subsp. bulgaricus
2038]
Length = 265
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 7/168 (4%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLSVG-HPEALTSDPDIVAALS 156
+DFL P +E +A +A+ Q GGY +AE+CRL + E L D V
Sbjct: 40 TDFLDP----RQRQIMETIAGGEAIVQAFGGYEEAEKCRLYISLEWENLRPDDYQVQLFE 95
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
I F H LGS+ +G+ + GDII G+ QF ELA + + ++++G
Sbjct: 96 IEYPQKFASLRHSQILGSLANSGVKTDTFGDIITDGQGRWQFFAEKELAGFFASQIDRMG 155
Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKL 264
V V PL ++ + +S+R+DA +A SRS++
Sbjct: 156 PVKVRLEEKPLKDRLEAEDNSEIISAVASSMRLDAFLAALSNKSRSQV 203
>gi|373451744|ref|ZP_09543663.1| hypothetical protein HMPREF0984_00705 [Eubacterium sp. 3_1_31]
gi|371967965|gb|EHO85432.1| hypothetical protein HMPREF0984_00705 [Eubacterium sp. 3_1_31]
Length = 251
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 98/201 (48%), Gaps = 12/201 (5%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA-DVKAVAQGGYPQAERCRLSV 139
VK I ++ RR ++ + F P E + L + GGY AERCR ++
Sbjct: 15 VKRIYDLIDLMERRRRIVVTPFFAPD---ECNICDAILGHQIPYGKSGGYQGAERCRYAL 71
Query: 140 GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFL 199
E +D I L T + F +H D LG+IL GI REKIGD+I++ + F
Sbjct: 72 LPYEDELADLKI-TILKATYSPQFGKLAHPDVLGAILNLGIEREKIGDLIVKDNELIIF- 129
Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
V E+ +Y++ +L ++ +V R + YEP K + +SLR+D L S+ +
Sbjct: 130 VDEEIENYIVCNLTRIKRSNVHFKRYE-GEVTYEPKIRYEHKIV-SSLRLDVLVSSFANI 187
Query: 260 SRSKLVNLIRYSSLASLVQIS 280
SR K LIR A LV+++
Sbjct: 188 SRKKAQELIR----AGLVKVN 204
>gi|116513838|ref|YP_812744.1| cell division protein [Lactobacillus delbrueckii subsp. bulgaricus
ATCC BAA-365]
gi|418029212|ref|ZP_12667760.1| hypothetical protein LDBUL1632_00554 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
gi|116093153|gb|ABJ58306.1| Cell division protein, S4-like domain [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
gi|354690930|gb|EHE90872.1| hypothetical protein LDBUL1632_00554 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
Length = 265
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 7/168 (4%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLSVG-HPEALTSDPDIVAALS 156
+DFL P +E +A +A+ Q GGY +AE+CRL + E L D V
Sbjct: 40 TDFLDP----RQRQIMETIAGGEAIVQAFGGYEEAEKCRLYISLEWENLRPDDYQVQLFE 95
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
I F H LGS+ +G+ + GDII G+ QF ELA + + ++++G
Sbjct: 96 IEYPQKFASLRHSQILGSLANSGVKTDTFGDIITDGQGRWQFFAEKELAGFFASQIDRMG 155
Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKL 264
V V PL ++ + +S+R+DA+ +A SRS++
Sbjct: 156 PVKVRLEEKPLKDRLEAEDNSEIISAVASSMRLDAVLAALSNKSRSQV 203
>gi|138894669|ref|YP_001125122.1| RNA binding protein [Geobacillus thermodenitrificans NG80-2]
gi|196247716|ref|ZP_03146418.1| RNA-binding S4 domain protein [Geobacillus sp. G11MC16]
gi|134266182|gb|ABO66377.1| RNA binding protein [Geobacillus thermodenitrificans NG80-2]
gi|196212500|gb|EDY07257.1| RNA-binding S4 domain protein [Geobacillus sp. G11MC16]
Length = 257
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 99/205 (48%), Gaps = 10/205 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ +LE S + +DFL P + + DV+ GG P AER R +
Sbjct: 15 IDQVLEWKDTVSRQYAPKLTDFLDPREQQIVQSIVGSDEDVRVSFFGGVPFAERKRAFLY 74
Query: 141 HP--EALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
P E D DIV ++ F H D LG+++ G+ R K GDI++QG + QF
Sbjct: 75 PPYIEPDEGDYDIVL-FAVRYPDKFISLEHRDVLGALMSLGLRRGKFGDILVQGGE-IQF 132
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPL-LALEYEPPRTKSFKTIEASLRVDALASAGF 257
E+ADY+ +E +G V+ +PL A+ E + T+ +SLR+DA+ + F
Sbjct: 133 FAAAEVADYIRLHVETIGKARVTLEPLPLSAAMPIEETWQEGTVTV-SSLRLDAVLAQAF 191
Query: 258 KLSRSKLVNLIRYSSLASLVQISAK 282
+L+R K L+ + LV+++ +
Sbjct: 192 RLARDKARTLVE----SGLVKVNWR 212
>gi|323340623|ref|ZP_08080875.1| S4 domain-containing protein YlmH [Lactobacillus ruminis ATCC
25644]
gi|335996874|ref|ZP_08562791.1| ribosomal protein S4e [Lactobacillus ruminis SPM0211]
gi|417974377|ref|ZP_12615198.1| RNA binding protein [Lactobacillus ruminis ATCC 25644]
gi|323091746|gb|EFZ34366.1| S4 domain-containing protein YlmH [Lactobacillus ruminis ATCC
25644]
gi|335351944|gb|EGM53435.1| ribosomal protein S4e [Lactobacillus ruminis SPM0211]
gi|346329374|gb|EGX97672.1| RNA binding protein [Lactobacillus ruminis ATCC 25644]
Length = 261
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 94/201 (46%), Gaps = 4/201 (1%)
Query: 86 EMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL 145
E+ RA + + FL P + + + + DVK GG+ +ER R+ + +PE
Sbjct: 21 EVIVRAKDEYRPILTHFLNPRQHFIADVLIGRFDDVKLKTFGGFSGSERKRI-LFYPEYY 79
Query: 146 T-SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE 203
D D ++ L I F H LG++ G+ R+ IGDII G K QF E
Sbjct: 80 EPQDNDFSMSLLEINYPVKFAKLEHRTILGTLANCGLERDVIGDIITDGTKW-QFFCEKE 138
Query: 204 LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 263
+ YL+ +++++G V V IPL + +SLR D L S+ + LSR
Sbjct: 139 IEPYLLENIDRIGKVKVKLGEIPLQNAVSPIEEWDHATVVLSSLRCDVLISSVYNLSRKH 198
Query: 264 LVNLIRYSSLASLVQISAKAS 284
+ +L++ + ++ I +KA
Sbjct: 199 VKDLLQTNKVSLNWMILSKAD 219
>gi|392949181|ref|ZP_10314772.1| cell division protein, RNA-binding S4 domain-containing protein
[Lactobacillus pentosus KCA1]
gi|392435596|gb|EIW13529.1| cell division protein, RNA-binding S4 domain-containing protein
[Lactobacillus pentosus KCA1]
Length = 261
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 96/212 (45%), Gaps = 19/212 (8%)
Query: 66 DDLLKGVGDKNA--IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKA 123
D+L + D A IE+V L R+ + + + + FL P + + +L DV+
Sbjct: 3 DNLKQHFRDSEAPFIEQVTGWL---RQVADQYRPILTAFLNPRQVYIAQTLANQLDDVRM 59
Query: 124 VAQGGYPQAERCRLSVGHP--EALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIA 181
A GG+ AE R+ P E T+D I +I F HG LG++ G+
Sbjct: 60 RAYGGFEGAELQRILFYPPYYEPETADFQITL-FNIVYPVKFATLKHGQILGTLANAGVE 118
Query: 182 REKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCT-----RIPLLALEYEPPR 236
R+ GDII GE QF+ E+ADY +++ G V T ++ + ++EP
Sbjct: 119 RDVFGDIITDGEHW-QFVCESEMADYFNDQIDRFGKTKVHLTAVAGSKVIVREDDWEP-- 175
Query: 237 TKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
T +SLR D++ A F LSR LI
Sbjct: 176 ---VTTTVSSLRADSIIKAAFNLSRHHAKELI 204
>gi|317129283|ref|YP_004095565.1| RNA-binding S4 domain-containing protein [Bacillus cellulosilyticus
DSM 2522]
gi|315474231|gb|ADU30834.1| RNA-binding S4 domain protein [Bacillus cellulosilyticus DSM 2522]
Length = 257
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 98/195 (50%), Gaps = 14/195 (7%)
Query: 81 VKHILEMARRASSRREVLHSDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAER--CR 136
V ++E A + +DFL P + +S++ + +V GGY +AER C
Sbjct: 15 VDQVMEWKETAIEQYRSKLTDFLDPRQQYIVQSLVG--QNDEVAVSFYGGYKEAERKRCL 72
Query: 137 LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
+ + E +T D DI A + F H + LG+++ G+ REK GDI+ E+
Sbjct: 73 IYPHYVEPVTEDYDI-ALYELLYPTKFVQIEHREILGALMNVGLKREKFGDILNSAER-F 130
Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVDALA 253
Q ++ E+A+++ +L+ VG VS +P +E TK + + +SLR+D +
Sbjct: 131 QIVLAKEVAEFVSWNLKSVGKARVSLQVVP---IEESISVTKEYSYLHITASSLRLDTIV 187
Query: 254 SAGFKLSRSKLVNLI 268
+ +KLSRSK+ +I
Sbjct: 188 AEVYKLSRSKVKPMI 202
>gi|296331117|ref|ZP_06873591.1| factor involved in shape determination, RNA-binding fold protein
[Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305674272|ref|YP_003865944.1| shape determination protein [Bacillus subtilis subsp. spizizenii
str. W23]
gi|296151761|gb|EFG92636.1| factor involved in shape determination, RNA-binding fold protein
[Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305412516|gb|ADM37635.1| factor involved in shape determination, RNA-binding fold protein
[Bacillus subtilis subsp. spizizenii str. W23]
Length = 257
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 90/175 (51%), Gaps = 11/175 (6%)
Query: 100 SDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSVGHPEALT---SDPDIVAA 154
+DFL P +E ++ A+ ADV GGY +AER R ++ +PE LT SD ++ A
Sbjct: 35 TDFLDP---REQVILSAVTGQADVGLAFSGGYDRAERKR-AILYPEYLTPEESDFEL-QA 89
Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 214
++ F H LG+++G G+ R+K GDI+ E Q +V + AD++ L +
Sbjct: 90 FNVRYAEKFVSVEHRSLLGALMGIGLKRQKFGDIVF-SETSVQLIVSADTADFVAAQLTQ 148
Query: 215 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIR 269
G +VS +I L L + +SLR+DA+ ++ + SR K L++
Sbjct: 149 AGKAAVSLEKIDLSDLNIPAVDVEIRDDTVSSLRLDAVCASMSRQSRQKSQTLVK 203
>gi|415886495|ref|ZP_11548275.1| RNA-binding S4 domain protein [Bacillus methanolicus MGA3]
gi|387587182|gb|EIJ79505.1| RNA-binding S4 domain protein [Bacillus methanolicus MGA3]
Length = 257
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 64/108 (59%), Gaps = 3/108 (2%)
Query: 163 FQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSC 222
F H LGS++ G+ R K GDI+++G+K QF E+ADY+ L+ +G SV+
Sbjct: 98 FITIEHRQVLGSLMSLGLKRGKFGDILIEGDK-VQFFAGKEIADYVSLQLDSIGKASVTI 156
Query: 223 TRIPLL-ALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIR 269
IPL A++ T+ T+ +SLR+DA+ SA + LSR K NLI+
Sbjct: 157 NEIPLENAIQITESWTEETSTV-SSLRLDAVISALYNLSRQKSQNLIQ 203
>gi|422845429|ref|ZP_16892139.1| S4 domain protein [Lactobacillus delbrueckii subsp. lactis DSM
20072]
gi|325684357|gb|EGD26526.1| S4 domain protein [Lactobacillus delbrueckii subsp. lactis DSM
20072]
Length = 265
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 7/168 (4%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLSVG-HPEALTSDPDIVAALS 156
+DFL P +E +A +A+ Q GGY +AE+CRL + E L D V
Sbjct: 40 TDFLDP----RQRQIMETIAGEEAIMQAFGGYEEAEKCRLYISLEWENLRPDDYHVQLFE 95
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
I F H LGS+ +G+ + GDII G+ QF ELA + + ++++G
Sbjct: 96 IEYPQKFASLRHSQILGSLANSGVKTDTFGDIITDGQGRWQFFAEKELAGFFASQIDRMG 155
Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKL 264
V V PL ++ + +S+R+DA+ +A SRS++
Sbjct: 156 PVKVRLEEKPLKDRLEAEDNSEIITAVASSMRLDAVLAALSNKSRSQV 203
>gi|28211284|ref|NP_782228.1| RNA binding protein [Clostridium tetani E88]
gi|28203724|gb|AAO36165.1| RNA binding protein [Clostridium tetani E88]
Length = 258
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 102/215 (47%), Gaps = 8/215 (3%)
Query: 74 DKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAE 133
DK+ I + + + + +S V++++ PP + +++ L +K + G + +AE
Sbjct: 16 DKSLISSIYDKILLCEKINS---VVYTEEFYPPNIWKAIENLSHHLSIKVYSSGVFKEAE 72
Query: 134 RCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGE 193
R R+ P+ + P V L I F P H D++G I+ GI R K+GD IL+ +
Sbjct: 73 R-RMLAFSPDEVWYYP--VDLLKIENGSKFLPLRHKDYMGGIMSLGIKRYKLGDFILK-D 128
Query: 194 KGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALA 253
V L++Y++ +L +G +++ L E + I SLR+D++
Sbjct: 129 NVCYVAVCQSLSEYIVNNLTSIGRNPCIVSKLDLFTKELPNYEFEDINIIITSLRMDSVV 188
Query: 254 SAGFKLSRSKLVNLIRYSS-LASLVQISAKASAIR 287
++ LSRSK LI+ L + + KA ++
Sbjct: 189 ASLANLSRSKGEELIQSGKVLLDYLTVKDKAKVVK 223
>gi|421894307|ref|ZP_16324797.1| S4 domain protein [Pediococcus pentosaceus IE-3]
gi|385272851|emb|CCG90169.1| S4 domain protein [Pediococcus pentosaceus IE-3]
Length = 261
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 96/208 (46%), Gaps = 18/208 (8%)
Query: 91 ASSRREVLH------SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEA 144
+SS +E L+ ++FL P + + ++K GG+ +AE R +
Sbjct: 21 SSSLQEALYQNRPILTNFLNPREQHILQTLVNRFPELKVYFNGGFSEAENKRALITPDYF 80
Query: 145 LTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE 203
+ ++ D V I F H LG+++ GI R GDI+ Q E+ QF V E
Sbjct: 81 VPAEDDFSVRIFEINYPINFTDLEHRQILGTLVNAGIKRSTFGDIVHQAERW-QFAVNGE 139
Query: 204 LADYLITSLEKVGNVSV-----SCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
L ++ + ++++G + V S I + ++EP +T+ ASLR+D++ S GF
Sbjct: 140 LENFFLNEIDRIGKIKVKLIPTSTNDILKVQDDWEPVN----QTV-ASLRMDSIISTGFS 194
Query: 259 LSRSKLVNLIRYSSLASLVQISAKASAI 286
+SR ++ LI + I KA +
Sbjct: 195 ISRHRVKELIEKRLVQLNWMIDEKADTL 222
>gi|89101248|ref|ZP_01174071.1| hypothetical protein B14911_02005 [Bacillus sp. NRRL B-14911]
gi|89084041|gb|EAR63219.1| hypothetical protein B14911_02005 [Bacillus sp. NRRL B-14911]
Length = 257
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 87/167 (52%), Gaps = 6/167 (3%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITG 159
+DFL P + M + + + VK GG ER R ++ +P+ T D + +
Sbjct: 34 TDFLDPREQQIVKMIVGEHSGVKLRLFGGTEGTERKR-ALLYPKYFTPDEEEFSITLFEI 92
Query: 160 NF--GFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
N+ F H LGS++ G+ R K GDI +Q E+ AQF V E+ DY+ LE +G
Sbjct: 93 NYPSKFVSIEHPQILGSLMALGLKRGKFGDITVQDER-AQFFVSREIEDYVSMQLESIGK 151
Query: 218 VSVSCTRIPL-LALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 263
SV+ ++PL A+ +S ++ +SLR+DA+ SA + +SR K
Sbjct: 152 ASVTLKKLPLEKAITAAGAWEESSASV-SSLRLDAVISAIYNISRQK 197
>gi|399888859|ref|ZP_10774736.1| RNA binding protein [Clostridium arbusti SL206]
Length = 256
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 99/201 (49%), Gaps = 9/201 (4%)
Query: 74 DKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAE 133
DK A+ + + +A A + V ++F TP + + + L L ++ G + +E
Sbjct: 14 DKLALSNIFDKINLA--AKIEKPVYTNEFYTPDICND-ISKLSDLLGLQISIYGIFENSE 70
Query: 134 RCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGE 193
R + + E +++ P + + I F H D++G+I+ GI R K GD+I+ E
Sbjct: 71 R-NMLLFSKEKVSNFP--INLIKIENKSKFTDLGHRDYMGAIMSLGINRNKFGDLIV--E 125
Query: 194 KGAQFLVVPE-LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDAL 252
F+ V E ++ Y+I +L +G S S +++ L + F I +SLR+D L
Sbjct: 126 NNCCFVAVCEDISSYIIDNLTSIGKCSCSISQLELTEDNIPSVNFQEFTIIVSSLRLDCL 185
Query: 253 ASAGFKLSRSKLVNLIRYSSL 273
+ +SRSK V+LI+ S+
Sbjct: 186 IGSVCNISRSKAVDLIKKGSV 206
>gi|352516938|ref|YP_004886255.1| hypothetical protein TEH_07640 [Tetragenococcus halophilus NBRC
12172]
gi|348601045|dbj|BAK94091.1| hypothetical protein TEH_07640 [Tetragenococcus halophilus NBRC
12172]
Length = 260
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 8/168 (4%)
Query: 100 SDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAERCRLSV--GHPEALTSDPDIVAAL 155
++FL P + E+++ E +++K GGY +AER R + + E D +I
Sbjct: 36 TEFLDPRQAFILETLVRQE--SELKFRFFGGYEEAERSRCLIFPNYYEPSQEDFEI-DLF 92
Query: 156 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 215
++ F SHG LGS++GTGI RE +GDII GE Q + E++ Y+ L K+
Sbjct: 93 NVHYPKKFTVLSHGKILGSLVGTGIRREFLGDIISDGE-NWQVFIAKEISSYVQLQLSKI 151
Query: 216 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 263
GNV V + + + + T +SLR+D + S F +SR +
Sbjct: 152 GNVKVRLEELSYVDILIPKDGWTNENTTVSSLRLDNVISTVFNISRQR 199
>gi|225567966|ref|ZP_03776991.1| hypothetical protein CLOHYLEM_04039 [Clostridium hylemonae DSM
15053]
gi|225163254|gb|EEG75873.1| hypothetical protein CLOHYLEM_04039 [Clostridium hylemonae DSM
15053]
Length = 251
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 91/191 (47%), Gaps = 8/191 (4%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
K + E++ A +R V SDFL L + + GGY +ER ++
Sbjct: 10 KRLAELSDLAFTRGIVTFSDFLNLNELNILHTTPKHMFPAHYETYGGYDLSERQMVAF-L 68
Query: 142 PEAL----TSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
P+AL T ++ ++ F + +H D+LG+++ GI R K+GDII G GA
Sbjct: 69 PDALYYEYTYPLSVIEVAPVSRKFA-EELTHRDYLGALMNLGIERSKLGDII-AGSFGAF 126
Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
V ELA Y+ L ++ + +V + P YE P+ + K S+R+D + S +
Sbjct: 127 LFVKEELAAYITGELTRIRHTAVQAVQRPAAEFTYE-PKYEEMKGTVPSVRLDTVLSVAW 185
Query: 258 KLSRSKLVNLI 268
LSRSKL I
Sbjct: 186 PLSRSKLTAYI 196
>gi|229162833|ref|ZP_04290790.1| RNA-binding S4 domain protein [Bacillus cereus R309803]
gi|228620715|gb|EEK77584.1| RNA-binding S4 domain protein [Bacillus cereus R309803]
Length = 241
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 97/200 (48%), Gaps = 15/200 (7%)
Query: 89 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
+R + +V +DFL P + M + + DV G P AER R + +P+ L +
Sbjct: 8 KRTAEHHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFDGATPHAERKRALI-YPDYLEVN 65
Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 206
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 66 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQIIVAKEIVS 124
Query: 207 YLITSLEKVGNVSVSCTRI---PLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 263
Y+ +L+ +G V VS + I +L + +E KS +SLR+D + + +SR K
Sbjct: 125 YIEMNLQSIGKVKVSLSSIQGEQILQM-HETWGEKSGTV--SSLRLDVMLAEMLHVSRQK 181
Query: 264 LVNLIRYSSLASLVQISAKA 283
+ LIR LV+++ K
Sbjct: 182 VQPLIR----NGLVKVNWKT 197
>gi|116492942|ref|YP_804677.1| cell division protein [Pediococcus pentosaceus ATCC 25745]
gi|116103092|gb|ABJ68235.1| Cell division protein, S4-like domain [Pediococcus pentosaceus ATCC
25745]
Length = 261
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 89/193 (46%), Gaps = 12/193 (6%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
++FL P + + ++K GG+ +AE R + + ++ D V I
Sbjct: 36 TNFLNPREQHILQTLVNRFPELKVYFNGGFSEAENKRALITPDYFVPAEDDFSVRIFEIN 95
Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 218
F H LG+++ GI R GDI+ Q E+ QF V EL ++ + ++++G +
Sbjct: 96 YPINFTDLEHRQILGTLVNAGIKRSTFGDIVHQAERW-QFAVNGELENFFLNEIDRIGKI 154
Query: 219 SV-----SCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSL 273
V S I + ++EP +T+ ASLR+D++ S GF +SR ++ LI +
Sbjct: 155 KVKLIPTSTNDILKVQDDWEPVN----QTV-ASLRMDSIISTGFSISRHRVKELIEKRLV 209
Query: 274 ASLVQISAKASAI 286
I KA +
Sbjct: 210 QLNWMIDEKADTL 222
>gi|357236380|ref|ZP_09123723.1| YlmH protein [Streptococcus criceti HS-6]
gi|356884362|gb|EHI74562.1| YlmH protein [Streptococcus criceti HS-6]
Length = 261
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 83/180 (46%), Gaps = 7/180 (3%)
Query: 86 EMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL 145
++A R +DFL P +K + ++ +K Y + E R+ + P+
Sbjct: 23 DLAERVEDTYTYQLTDFLDPRQVKIAESVFGQMG-IKYYLSTDYLKTEYARV-IAAPDYY 80
Query: 146 TSDPDI--VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVP 202
+P VA L I+ N F +H +GS + GI R GDIIL E AQ +V
Sbjct: 81 ELEPQDFEVALLEISYNSKFNHLTHAQIMGSFINKLGIQRNVFGDIIL-TEVRAQIIVTK 139
Query: 203 ELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRS 262
L Y T +EK+G +V + L R K F + +SLR+D + ++ FKLSRS
Sbjct: 140 SLVSYFAT-VEKIGRAAVKIKEVDFSQLLLPANRAKEFDVLVSSLRLDKVIASAFKLSRS 198
>gi|334882317|emb|CCB83314.1| putative cell division protein [Lactobacillus pentosus MP-10]
gi|339639144|emb|CCC18372.1| putative cell division protein [Lactobacillus pentosus IG1]
Length = 261
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 94/211 (44%), Gaps = 17/211 (8%)
Query: 66 DDLLKGVGDKNA--IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKA 123
D+L + D A IE+V L R+ + + + + FL P + + +L DV+
Sbjct: 3 DNLKQHFRDSEAPFIEQVTGWL---RQVADQYRPILTAFLNPRQVYIAQTLANQLDDVRM 59
Query: 124 VAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAR 182
A GG+ AE R+ P D + +I F HG LG++ G+ R
Sbjct: 60 RAYGGFEGAELQRILFYPPYYEPEAADFQITLFNIVYPVKFATLKHGQILGTLANAGVER 119
Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRI---PLLALE--YEPPRT 237
+ GDII GE QF+ E+ADY +++ G V T + ++A E +EP
Sbjct: 120 DVFGDIITDGEHW-QFVCESEMADYFNDQIDRFGKTKVHLTAVAGSEVIAREDDWEP--- 175
Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
T +SLR D++ A F LSR LI
Sbjct: 176 --VTTTVSSLRADSIIKAAFNLSRHHAKELI 204
>gi|422824075|ref|ZP_16872263.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK405]
gi|422825850|ref|ZP_16874029.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK678]
gi|324993402|gb|EGC25322.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK405]
gi|324995286|gb|EGC27198.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK678]
Length = 261
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 88/189 (46%), Gaps = 10/189 (5%)
Query: 85 LEMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG- 140
LE+ +R + FL P +LK + K DV+ A GY +E R+ V
Sbjct: 21 LELLQRVQDTYAFETTSFLNPHQVSILKN----IGKQYDVQVFASSGYYPSELARVLVAP 76
Query: 141 HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFL 199
L D ++ L I+ F SH +G++L GI R GDI++ G++ AQ
Sbjct: 77 SYYQLNMDDFELSLLEISYASKFYKISHSQIMGTLLNHLGIERRTFGDILVVGDR-AQLF 135
Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
V LA Y I + K+ + V + L E + + + + +SLR+D L ++ FKL
Sbjct: 136 VDKRLAQYFIDHVSKIAKMPVKLKEVSFAELLKEQKQAVTREILASSLRLDKLVASTFKL 195
Query: 260 SRSKLVNLI 268
SR++ LI
Sbjct: 196 SRNQAAQLI 204
>gi|350265853|ref|YP_004877160.1| S4 domain-containing protein [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349598740|gb|AEP86528.1| S4 domain protein [Bacillus subtilis subsp. spizizenii TU-B-10]
Length = 257
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 90/175 (51%), Gaps = 11/175 (6%)
Query: 100 SDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSVGHPEALT---SDPDIVAA 154
+DFL P +E ++ A+ ADV GGY +AER R ++ +PE +T SD ++ A
Sbjct: 35 TDFLDP---REQVILSAVTGQADVGLAFSGGYDRAERKR-AILYPEYITPEESDFEL-QA 89
Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 214
++ F H LG+++G G+ R+K GDI+ E Q +V + AD++ L +
Sbjct: 90 FNVRYAEKFVSVDHRSLLGALMGIGLKRQKFGDIVF-SETSVQLIVSADTADFVAAQLTQ 148
Query: 215 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIR 269
G +VS +I L L + +SLR+DA+ ++ + SR K L++
Sbjct: 149 AGKAAVSLEKIDLSDLNIPAVDVEIRDDTVSSLRLDAVCASMSRQSRQKSQTLVK 203
>gi|374337559|ref|YP_005094264.1| hypothetical protein SMA_0566 [Streptococcus macedonicus ACA-DC
198]
gi|372283664|emb|CCF01857.1| Hypothetical protein, contains S4-like RNA binding domain
[Streptococcus macedonicus ACA-DC 198]
Length = 263
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 102/213 (47%), Gaps = 14/213 (6%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKA---VAQGGYPQAERCRL 137
++ I ++ARR +DFL L++ +A + + + V+ YP AE RL
Sbjct: 19 IEKIDDLARRVEETYAYALTDFLN---LRQVDIAKSVIGNRRLHYFVSSDYYP-AEYARL 74
Query: 138 SVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSIL-GTGIAREKIGDIILQGEK 194
V P+ +P+ + L + N F +H +G++L GI R IGDI++ E
Sbjct: 75 IVA-PDYYEFNPEDFELTLLEVNYNSKFNQLTHSQIMGTLLHKLGIKRTVIGDILV--ES 131
Query: 195 G-AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALA 253
G AQ LV +ADY ++ K+ SVS IPL L ++ I +S+R+D +
Sbjct: 132 GYAQLLVKQNMADYFRANVTKIAKASVSLKEIPLEQLIAGEKDSRQLDIIVSSMRMDKVL 191
Query: 254 SAGFKLSRSKLVNLIRYSSLASLVQISAKASAI 286
+ LSRS+ V LI + QI +AS +
Sbjct: 192 ATVLNLSRSQAVQLIETDKVKLNYQIVDRASEM 224
>gi|228998678|ref|ZP_04158265.1| RNA-binding S4 domain protein [Bacillus mycoides Rock3-17]
gi|228761146|gb|EEM10105.1| RNA-binding S4 domain protein [Bacillus mycoides Rock3-17]
Length = 257
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 99/208 (47%), Gaps = 14/208 (6%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE + A +V +DFL P + + D G P+AER R ++
Sbjct: 15 VDKVLEWKQVAEEYHQVKLTDFLDPRQQQIVATIIGNQGDATLRLYGAEPKAERKR-ALI 73
Query: 141 HPEALT-SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P L ++ D V L I F H LG+ + G+ REK GDI+LQ E AQ
Sbjct: 74 YPSYLDLNEEDFQVEVLEIDYPSKFYTLEHRQILGAFMSLGLTREKCGDILLQ-ENRAQI 132
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRI---PLLALEYEPPRTKSFKTIEASLRVDALASA 255
+V E+ Y+ +L+ +G ++VS + + +L L+ E K +SLR+D L +
Sbjct: 133 IVAKEIVSYIEMNLQSIGKMTVSLSSVQADKVLRLQEE---WKEQSGTVSSLRLDVLLAE 189
Query: 256 GFKLSRSKLVNLIRYSSLASLVQISAKA 283
LSR K+ LI+ LV+++ K
Sbjct: 190 MLHLSRQKVQPLIK----NGLVKVNWKT 213
>gi|398310642|ref|ZP_10514116.1| shape determination protein [Bacillus mojavensis RO-H-1]
Length = 257
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 95/194 (48%), Gaps = 11/194 (5%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLS 138
+ LE R + + +DFL P +E ++ A+ ADV GGY +AER R +
Sbjct: 16 IDQALEWKRIVQEQYRMKLTDFLDP---REQVILAAVTGQADVGLAFCGGYGRAERKR-A 71
Query: 139 VGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
+ +PE +T SD ++ A + F H LGS++G G+ R+K GD++ E
Sbjct: 72 ILYPEYITPEESDFEL-QAFDVRYAEKFVTVDHRSLLGSLMGIGLKRQKFGDLVF-SETA 129
Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASA 255
Q +V E AD++ L + G +V +I L L+ + +SLR+DA+ ++
Sbjct: 130 VQIIVSAETADFVAAQLTQAGKAAVKLEKIDLSDLKIPALDVEIRDDTVSSLRLDAVCAS 189
Query: 256 GFKLSRSKLVNLIR 269
+ SR K L++
Sbjct: 190 MSRQSRQKSQTLVK 203
>gi|398304131|ref|ZP_10507717.1| shape determination protein [Bacillus vallismortis DV1-F-3]
Length = 257
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 95/194 (48%), Gaps = 11/194 (5%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLS 138
+ LE R + + +DFL P +E ++ A+ ADV GGY +AER R +
Sbjct: 16 IDQALEWKRIVQEQYRMKLTDFLDP---REQVILSAVTGQADVGLAFFGGYDRAERKR-A 71
Query: 139 VGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
+ +PE +T SD ++ A + F H LG+++G G+ R+K GDI+ E
Sbjct: 72 ILYPEYITPEESDFEL-QAFHVRYAEKFVSVDHRALLGALMGIGLKRQKFGDIVF-SETA 129
Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASA 255
Q +V + AD++ L + G +VS +I L L + +SLR+DA+ ++
Sbjct: 130 VQLIVSADTADFVAAQLTQAGKAAVSLEKIDLSDLNIPAVDVEIRDDTVSSLRLDAVCAS 189
Query: 256 GFKLSRSKLVNLIR 269
+ SR K L++
Sbjct: 190 MSRQSRQKSQTLVK 203
>gi|422876956|ref|ZP_16923426.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK1056]
gi|332361764|gb|EGJ39568.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK1056]
Length = 261
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 87/189 (46%), Gaps = 10/189 (5%)
Query: 85 LEMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG- 140
LE+ +R + FL P +LK + K DV+ A Y +E R+ V
Sbjct: 21 LELLQRVQDTYAFETTSFLNPHQVSILKN----IGKQYDVQVFASSDYFPSELARVLVAP 76
Query: 141 HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFL 199
L D ++ L I+ F SH +G++L GI R GDI++ G++ AQ
Sbjct: 77 SYYQLNMDDFELSLLEISYASKFYKISHSQIMGTLLNQLGIERRTFGDILVVGDR-AQLF 135
Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
V LA Y I + KV + V + L E + + + + +SLR+D L ++ FKL
Sbjct: 136 VAKRLAQYFIDHVTKVAKMPVKLKEVSFAELLKEQKQAVTREILASSLRLDKLVASTFKL 195
Query: 260 SRSKLVNLI 268
SRS+ LI
Sbjct: 196 SRSQAAQLI 204
>gi|291542659|emb|CBL15769.1| Uncharacterized conserved protein, contains S4-like domain
[Ruminococcus bromii L2-63]
Length = 255
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 78/153 (50%), Gaps = 14/153 (9%)
Query: 127 GGYPQAERCRLSVGHPEALTSDPDIVAALSITG-NFGFQPC---SHGDFLGSILGTGIAR 182
GGY +ER L + E TS I G F F+ C +H DFLGS++ GI R
Sbjct: 63 GGYDDSERKMLGLFFDEPSTS------MFPICGIEFSFRKCDRLTHRDFLGSLMSLGIER 116
Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLAL-EYEPPRTKSFK 241
E +GDI+++ + F V EL+DY+ + + KVG V V L L + K+F
Sbjct: 117 ETVGDILVEDGRAVVF-VKAELSDYVKSQISKVGRVGVKVDDADLSKLPQGRGVEEKTF- 174
Query: 242 TIEASLRVDALASAGFKLSRSKLVNLIRYSSLA 274
I +SLR+D + +A KLSR K +I S+
Sbjct: 175 -IVSSLRLDNIVAAVCKLSREKTKTVIMSDSVC 206
>gi|229006180|ref|ZP_04163866.1| RNA-binding S4 domain protein [Bacillus mycoides Rock1-4]
gi|228755021|gb|EEM04380.1| RNA-binding S4 domain protein [Bacillus mycoides Rock1-4]
Length = 246
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 99/208 (47%), Gaps = 14/208 (6%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE + A +V +DFL P + + D G P+AER R ++
Sbjct: 4 VDKVLEWKQVAEEYHQVKLTDFLDPRQQQIVATIIGNQGDATLRLYGAEPKAERKR-ALI 62
Query: 141 HPEALT-SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P L ++ D V L I F H LG+ + G+ REK GDI+LQ E AQ
Sbjct: 63 YPSYLDLNEEDFQVEVLEIDYPSKFYTLEHRQILGAFMSLGLTREKCGDILLQ-ENRAQI 121
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRI---PLLALEYEPPRTKSFKTIEASLRVDALASA 255
+V E+ Y+ +L+ +G ++VS + + +L L+ E K +SLR+D L +
Sbjct: 122 IVAKEIVSYIEMNLQSIGKMTVSLSSVQADKVLRLQEE---WKEQSGTVSSLRLDVLLAE 178
Query: 256 GFKLSRSKLVNLIRYSSLASLVQISAKA 283
LSR K+ LI+ LV+++ K
Sbjct: 179 MLHLSRQKVQPLIK----NGLVKVNWKT 202
>gi|47570312|ref|ZP_00240959.1| S4 domain protein [Bacillus cereus G9241]
gi|47553021|gb|EAL11425.1| S4 domain protein [Bacillus cereus G9241]
Length = 255
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 102/208 (49%), Gaps = 16/208 (7%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE +RA+ +V +DFL P + M + + DV G P AER R +
Sbjct: 15 VDKVLEW-KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVAVQFDGATPHAERKRALI- 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ E AQ
Sbjct: 72 YPDYLVVNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQI 130
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLA---LEYEPPRTKSFKTIEASLRVDALASA 255
+V E+ Y+ +L+ +G V VS + P+ L+ + + T+ +SLR+D + +
Sbjct: 131 VVAKEVVSYIEMNLQSIGKVKVSLS--PVQGEKILQIQETWGEKSGTV-SSLRLDVMLAE 187
Query: 256 GFKLSRSKLVNLIRYSSLASLVQISAKA 283
+SR K+ LI+ LV+++ K
Sbjct: 188 MLHISRQKVQPLIK----NGLVKVNWKT 211
>gi|228992632|ref|ZP_04152558.1| RNA-binding S4 domain protein [Bacillus pseudomycoides DSM 12442]
gi|228766964|gb|EEM15601.1| RNA-binding S4 domain protein [Bacillus pseudomycoides DSM 12442]
Length = 257
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 99/208 (47%), Gaps = 14/208 (6%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE + A +V +DFL P + + D G P+AER R ++
Sbjct: 15 VDKVLEWKQVAEEYHQVKLTDFLDPRQQQIVATIVGNQGDATLRLYGAEPKAERKR-ALI 73
Query: 141 HPEALT-SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P L ++ D V L I F H LG+ + G+ REK GDI+LQ E AQ
Sbjct: 74 YPSYLDLNEEDFQVEVLEIDYPSKFYTLEHRQILGAFMSLGLTREKCGDILLQ-ENRAQI 132
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRI---PLLALEYEPPRTKSFKTIEASLRVDALASA 255
+V E+ Y+ +L+ +G ++VS + + +L L+ E K +SLR+D L +
Sbjct: 133 IVAKEIVSYIEMNLQSIGKMTVSLSSVQADKVLRLQEE---WKEQSGTVSSLRLDVLLAE 189
Query: 256 GFKLSRSKLVNLIRYSSLASLVQISAKA 283
LSR K+ LI+ LV+++ K
Sbjct: 190 MLHLSRQKVQPLIK----NGLVKVNWKT 213
>gi|386758263|ref|YP_006231479.1| shape determination protein [Bacillus sp. JS]
gi|384931545|gb|AFI28223.1| shape determination protein [Bacillus sp. JS]
Length = 257
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 94/194 (48%), Gaps = 11/194 (5%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLS 138
+ LE R + + +DFL P +E ++ A+ DV GGY +AER R +
Sbjct: 16 IDQALEWKRIVQEQYRMKLTDFLDP---REQVILTAVTGQTDVGLAFSGGYDRAERKR-A 71
Query: 139 VGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
+ +PE +T SD ++ A + F H LG+++G G+ R+K GDI+ E
Sbjct: 72 ILYPEYITPEESDFEL-QAFHVRYADKFVSVDHRSLLGALMGIGLKRQKFGDIVF-SESA 129
Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASA 255
Q +V + AD++ L + G +VS +I L L + +SLR+DA+ ++
Sbjct: 130 VQLIVSADTADFVAAQLTQAGKATVSLEKIGLSDLNIPAIDVEIRDDTVSSLRLDAVCAS 189
Query: 256 GFKLSRSKLVNLIR 269
+ SR K L++
Sbjct: 190 MSRQSRQKSQTLVK 203
>gi|257867506|ref|ZP_05647159.1| S4 domain-containing protein [Enterococcus casseliflavus EC30]
gi|257873835|ref|ZP_05653488.1| S4 domain-containing protein [Enterococcus casseliflavus EC10]
gi|257801562|gb|EEV30492.1| S4 domain-containing protein [Enterococcus casseliflavus EC30]
gi|257807999|gb|EEV36821.1| S4 domain-containing protein [Enterococcus casseliflavus EC10]
Length = 260
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 8/173 (4%)
Query: 100 SDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL--TSDPDIVAAL 155
+DFL P + ES+ + + D+ GGY AER R + +P+ T+D +
Sbjct: 36 TDFLDPRQAYILESL--IRQSTDLSFRFFGGYEAAERRRCLI-YPDYYEPTTDEFDMTLF 92
Query: 156 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 215
+I F SHG LG+++GTG+ RE GDI+ GE Q V E++ ++ ++K+
Sbjct: 93 TIQYPKKFTVLSHGKVLGTLMGTGVKREYFGDILSDGEI-WQVFVATEVSHFIQLQVDKI 151
Query: 216 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
GNVSV L + +SLR+D + SA + +SR + LI
Sbjct: 152 GNVSVRLEETKYTELIVPKDGWTEERETVSSLRLDTVISAVYNISRQRSKQLI 204
>gi|154496340|ref|ZP_02035036.1| hypothetical protein BACCAP_00628 [Bacteroides capillosus ATCC
29799]
gi|150274423|gb|EDN01500.1| S4 domain protein [Pseudoflavonifractor capillosus ATCC 29799]
Length = 266
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 87/183 (47%), Gaps = 7/183 (3%)
Query: 92 SSRREV-LHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER--CRL--SVGHPEALT 146
+ RR + H+ FL+P M + + GG+ AER C PE
Sbjct: 30 AGRRNIPAHTAFLSPQERSSVEMLINASGHPSHLFYGGFEGAERTICVFLPDWQAPEDWL 89
Query: 147 SDPDIVAALSITGNFGFQP-CSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELA 205
+D + ++ F +H DFLGSILG G+ REK+GD+++ L++ E+
Sbjct: 90 ADGEDFPICALRCTFPEDAGLTHRDFLGSILGLGLDREKVGDLLVS-PGVCDILLLKEIE 148
Query: 206 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 265
D+L+ LE G + + L AL K + A+LR+DA+A++ F L RSK
Sbjct: 149 DFLLLHLESAGRTRLKVAPVALSALTPPKVEVKLIRDTVATLRLDAVAASAFSLPRSKAA 208
Query: 266 NLI 268
+LI
Sbjct: 209 DLI 211
>gi|377831350|ref|ZP_09814327.1| S4 domain protein [Lactobacillus mucosae LM1]
gi|377554777|gb|EHT16479.1| S4 domain protein [Lactobacillus mucosae LM1]
Length = 262
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 93/195 (47%), Gaps = 7/195 (3%)
Query: 78 IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
I +V+ L MA A R +L +DFL P + + + DVK A GG+ AE R+
Sbjct: 19 IAQVEDWLNMA--ADQYRPIL-TDFLNPRQVYIAQTLTNRRDDVKMRANGGWEHAEMQRV 75
Query: 138 SV--GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
+ E +D ++ + I F H LG+++GTG+ R GD++ +G +
Sbjct: 76 LFYPSYYEPQQTDFEL-QLIEIDYPTKFTELHHRQILGTLIGTGLVRSSFGDVLNEGMRW 134
Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASA 255
Q +V L DYL + ++G + V + + ++ +S+R+DA+ +A
Sbjct: 135 -QVVVSRSLTDYLRQQVGQIGKIHVKMKPVEPEMIVTPQEDWETMTDTVSSMRLDAVIAA 193
Query: 256 GFKLSRSKLVNLIRY 270
GF SR++ LI +
Sbjct: 194 GFNYSRNRAKQLIEH 208
>gi|329766858|ref|ZP_08258386.1| hypothetical protein HMPREF0428_00083 [Gemella haemolysans M341]
gi|328837583|gb|EGF87208.1| hypothetical protein HMPREF0428_00083 [Gemella haemolysans M341]
Length = 256
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 83/169 (49%), Gaps = 10/169 (5%)
Query: 100 SDFLT--PPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSI 157
+ FLT ++ E ++A +D K GGY AE+ + + E D DIV L
Sbjct: 35 TKFLTNFEQIVLEQIVAY-NYSDFKIEFFGGYNDAEKKKAKIISNEYYDVDYDIVC-LKA 92
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
N F H + LG+I GI + GDI++ E V E+ADY+ K G
Sbjct: 93 KYNNKFNKIEHRNILGAIHNLGININRFGDIVVL-ENEVYIFVDEEIADYITMEFTKAGR 151
Query: 218 VSVSCTRIPL--LALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKL 264
V+++ R+ L +A+E + + F+ + +S R+D++A+ SRSK+
Sbjct: 152 VNLNFERVELADVAIE---KKYEDFEIVSSSFRLDSIAAKITNKSRSKV 197
>gi|257877585|ref|ZP_05657238.1| S4 domain-containing protein [Enterococcus casseliflavus EC20]
gi|257811751|gb|EEV40571.1| S4 domain-containing protein [Enterococcus casseliflavus EC20]
Length = 260
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 8/173 (4%)
Query: 100 SDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL--TSDPDIVAAL 155
+DFL P + ES+ + + D+ GGY AER R + +P+ T+D +
Sbjct: 36 TDFLDPRQAYILESL--IRQSTDLSFRFFGGYEAAERRRCLI-YPDYYEPTTDEFDMTLF 92
Query: 156 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 215
+I F SHG LG+++GTG+ RE GDI+ GE Q V E++ ++ ++K+
Sbjct: 93 TIQYPKKFTVLSHGKVLGTLMGTGVKREYFGDILSDGEI-WQVFVAAEVSHFIQLQVDKI 151
Query: 216 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
GNVSV L + +SLR+D + SA + +SR + LI
Sbjct: 152 GNVSVRLEETKYTELIVPKDGWTEERETVSSLRLDTVISAVYNISRQRSKQLI 204
>gi|423395802|ref|ZP_17373003.1| hypothetical protein ICU_01496 [Bacillus cereus BAG2X1-1]
gi|423406678|ref|ZP_17383827.1| hypothetical protein ICY_01363 [Bacillus cereus BAG2X1-3]
gi|401653544|gb|EJS71088.1| hypothetical protein ICU_01496 [Bacillus cereus BAG2X1-1]
gi|401659968|gb|EJS77451.1| hypothetical protein ICY_01363 [Bacillus cereus BAG2X1-3]
Length = 255
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 12/206 (5%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE +R + +V +DFL P + M + + DV G P AER R ++
Sbjct: 15 VDKVLEW-KRTAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVRFDGATPHAER-RRAII 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ E AQ
Sbjct: 72 YPDYLELNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQI 130
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGF 257
+V E+ Y+ +L+ +G V VS + + L+ + T+ +SLR+D + +
Sbjct: 131 VVAKEIVSYIEMNLQSIGKVKVSLSSVQGEQILQINETWGEKSGTV-SSLRLDVMLAEML 189
Query: 258 KLSRSKLVNLIRYSSLASLVQISAKA 283
LSR K+ LI+ LV+++ K
Sbjct: 190 HLSRQKIQPLIK----NGLVKVNWKT 211
>gi|402311264|ref|ZP_10830212.1| hypothetical protein HMPREF1142_0617 [Eubacterium sp. AS15]
gi|400365410|gb|EJP18462.1| hypothetical protein HMPREF1142_0617 [Eubacterium sp. AS15]
Length = 262
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 4/172 (2%)
Query: 100 SDFLTPPVLKESMMALEKLAD-VKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSI 157
+DF+ P K + L +D + GG ++ER +L V +P ++ V L +
Sbjct: 39 TDFMNPYEQKVFISILNAFSDDISYTLFGGAEKSER-KLFVIYPVYHMNEIKCPVKLLRL 97
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
GNF F+ SH D LG+++ GI REK GDI L E ++ + DYL+T+ + + +
Sbjct: 98 YGNFKFEKISHRDCLGALMSMGIVREKTGDIYLH-EDYVDIVIDESIDDYLLTNFKSIRH 156
Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIR 269
SV + + LE +SLR+D + S + L R+ N+++
Sbjct: 157 CSVKSKILDIDELEVSKQEFDVKLCSVSSLRLDNIISEAYNLPRATSTNIVK 208
>gi|325571367|ref|ZP_08146867.1| S4 domain-containing protein YlmH [Enterococcus casseliflavus ATCC
12755]
gi|420262036|ref|ZP_14764679.1| S4 domain-containing protein YlmH [Enterococcus sp. C1]
gi|325155843|gb|EGC68039.1| S4 domain-containing protein YlmH [Enterococcus casseliflavus ATCC
12755]
gi|394771058|gb|EJF50842.1| S4 domain-containing protein YlmH [Enterococcus sp. C1]
Length = 260
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 8/173 (4%)
Query: 100 SDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL--TSDPDIVAAL 155
+DFL P + ES+ + + D+ GGY AER R + +P+ T+D +
Sbjct: 36 TDFLDPRQAYILESL--IRQSTDLSFRFFGGYEAAERRRCLI-YPDYYEPTTDEFDMTLF 92
Query: 156 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 215
+I F SHG LG+++GTG+ RE GDI+ GE Q V E++ ++ ++K+
Sbjct: 93 TIQYPKKFTVLSHGKVLGTLMGTGVKREYFGDILSDGEI-WQVFVATEVSHFIQLQVDKI 151
Query: 216 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
GNVSV L + +SLR+D + SA + +SR + LI
Sbjct: 152 GNVSVRLEETKYTDLIVPKDGWTEERETVSSLRLDTVISAVYNISRQRSKQLI 204
>gi|164686337|ref|ZP_02210367.1| hypothetical protein CLOBAR_02775 [Clostridium bartlettii DSM
16795]
gi|164601939|gb|EDQ95404.1| S4 domain protein [Clostridium bartlettii DSM 16795]
Length = 179
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 66/118 (55%), Gaps = 1/118 (0%)
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
+ + I GNF F+ SH D+LG++L GI REKIGDII+ + Q +V ++ D++I +
Sbjct: 10 LKVIQIEGNFKFKSISHRDYLGALLNLGIKREKIGDIIIH-DNFCQVVVSEDICDFIIIN 68
Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIR 269
LEKV V I + + K +SLR+D++ + LSRS+ + LI+
Sbjct: 69 LEKVSKNKVKVKEITVKDIIESEQNFKEISFTVSSLRLDSVIGGVYNLSRSESLKLIK 126
>gi|300811330|ref|ZP_07091827.1| S4 domain protein [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
gi|300497694|gb|EFK32719.1| S4 domain protein [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
Length = 265
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 7/159 (4%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLSVG-HPEALTSDPDIVAALS 156
+DFL P +E +A +A+ Q GGY +AE+CRL + E L D V
Sbjct: 40 TDFLDP----RQRQIMETIAGGEAIVQAFGGYEEAEKCRLYISLEWENLRPDDYQVQLFE 95
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
I F H LGS+ +G+ + GDII G+ QF ELA + + ++++G
Sbjct: 96 IEYPQKFASLRHSQILGSLANSGVKTDTFGDIITDGQGRWQFFAEKELAGFFASQIDRMG 155
Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASA 255
V V PL ++ + +S+R+DA+ +A
Sbjct: 156 PVKVRLEEKPLKDRLEAEDNSEIITAVASSMRLDAVLAA 194
>gi|260584171|ref|ZP_05851919.1| YlmH protein [Granulicatella elegans ATCC 700633]
gi|260158797|gb|EEW93865.1| YlmH protein [Granulicatella elegans ATCC 700633]
Length = 262
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 77/151 (50%), Gaps = 4/151 (2%)
Query: 120 DVKAVAQGGYPQAERCRLSVGHPE--ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
D+K +GGY AER R + +P+ A T++ V + I F SHG LGS++G
Sbjct: 56 DIKFQFEGGYIAAERKRCMI-YPDFYAPTTEEFDVELIEIHYPIKFSSISHGQILGSLVG 114
Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
GI R+++GDII G + Q L+ ++ YL + +KVG +S+ L
Sbjct: 115 LGIDRDQLGDIISDGIRW-QLLLTKQMLPYLKQNFQKVGKISIRIDEKEYTELILPIDHW 173
Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
I +SLR+D L ++ F +SR + L+
Sbjct: 174 TYTTAIVSSLRLDTLIASIFHISRQRSKELV 204
>gi|422871407|ref|ZP_16917900.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK1087]
gi|328945575|gb|EGG39726.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK1087]
Length = 261
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 87/189 (46%), Gaps = 10/189 (5%)
Query: 85 LEMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG- 140
LE+ +R + FL P +LK + K DV+ A GY +E R+ V
Sbjct: 21 LELLQRVQDTYAFETTSFLNPHQVSILKN----IGKQYDVQVFASSGYYPSELARVLVAP 76
Query: 141 HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFL 199
L D ++ L I+ F SH +G++L GI R GDI++ G++ AQ
Sbjct: 77 SYYQLNMDDFELSLLEISYASKFYKISHSQIMGTLLNQLGIERRTFGDILVVGDR-AQLF 135
Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
V LA Y I + KV + V + E + + + + +SLR+D L ++ FKL
Sbjct: 136 VDKRLAQYFIDHVTKVAKMPVRLKEVSFAEQLKEQKQAVTREILASSLRLDKLVASTFKL 195
Query: 260 SRSKLVNLI 268
SRS+ LI
Sbjct: 196 SRSQAAQLI 204
>gi|373106343|ref|ZP_09520646.1| hypothetical protein HMPREF9623_00310 [Stomatobaculum longum]
gi|371652718|gb|EHO18126.1| hypothetical protein HMPREF9623_00310 [Stomatobaculum longum]
Length = 253
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 91/185 (49%), Gaps = 6/185 (3%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
+L+++R+ R HS FLT + + L +A ++ ++ G + AER ++
Sbjct: 11 NRLLDLSRQCEDRNVPTHSYFLTVEEQRLAAQCLPNVAGIRMISDGVFCDAER-KVLFFL 69
Query: 142 PEALTSDPD---IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
P L P+ I L+ +P H DFLG+++G GI RE +GD+++ E AQ
Sbjct: 70 PSYLEEPPEDELICLELAPRAPKFAEPLGHRDFLGALMGLGIRREMLGDLMVT-ENKAQL 128
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
+ +P + + L +V + + IP AL RT+ ASLR D L +A +
Sbjct: 129 VALPSVKALIERELTEVRHTRIEVLEIPREALSA-VRRTEVRSVNAASLRADVLVAAVWN 187
Query: 259 LSRSK 263
LSR++
Sbjct: 188 LSRTR 192
>gi|429737653|ref|ZP_19271509.1| S4 domain protein [Selenomonas sp. oral taxon 138 str. F0429]
gi|429152016|gb|EKX94853.1| S4 domain protein [Selenomonas sp. oral taxon 138 str. F0429]
Length = 264
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 74/145 (51%), Gaps = 4/145 (2%)
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIARE 183
GGY AER R + H + PD ++ + N F +H D LG+++G GI RE
Sbjct: 67 DGGYAGAERQRAMLRHRD-FRGTPDGFGISCVESVWNGQFARLTHRDVLGALMGLGIERE 125
Query: 184 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTI 243
IGDI L A+ + ++A +++ +L +G V L + RTK +
Sbjct: 126 LIGDI-LPAPDTAKIICDTKIAGFIVNNLTMIGAVGAKAALSNLEEIAPREERTKEIRAT 184
Query: 244 EASLRVDALASAGFKLSRSKLVNLI 268
ASLR+D++ +AGF +SRS+ + I
Sbjct: 185 VASLRLDSIVAAGFGISRSRAADDI 209
>gi|154483518|ref|ZP_02025966.1| hypothetical protein EUBVEN_01222 [Eubacterium ventriosum ATCC
27560]
gi|149735428|gb|EDM51314.1| S4 domain protein [Eubacterium ventriosum ATCC 27560]
Length = 251
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 93/190 (48%), Gaps = 14/190 (7%)
Query: 86 EMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL 145
++A + +R ++DFL + +L V GG AER R++V PE +
Sbjct: 14 DLANSSYNRNIYTYTDFLNLNEISILNSYKNQLPPVNVELAGGNDYAER-RIAVFSPEDI 72
Query: 146 TSDPDI----VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVV 201
D+ + I ++ SH D LG+IL GI R KIGDI L+ + A +
Sbjct: 73 YYTQDLPIKLIEIAPINSHYA-DKLSHRDVLGAILNLGIVRNKIGDIFLKDNQ-AYVYCI 130
Query: 202 PELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVDALASAGFK 258
+++ Y+ +L+K+ + V CT + A+ P FK I+ +++R+D+L + F
Sbjct: 131 DDISGYIAENLKKIKHTIVKCTVKYMEAVNITP----EFKIIKGTISNIRLDSLIATAFG 186
Query: 259 LSRSKLVNLI 268
SRS +++ I
Sbjct: 187 TSRSSIISFI 196
>gi|306820242|ref|ZP_07453884.1| conserved hypothetical protein [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551739|gb|EFM39688.1| conserved hypothetical protein [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 262
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 4/172 (2%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQ-GGYPQAERCRLSVGHPEALTSDPDI-VAALSI 157
+DF+ P K + L +D + A GG ++ER ++ V +P + V L +
Sbjct: 39 TDFMNPYEQKVFISILNAFSDEISYALFGGDEKSER-KIFVIYPVYQMDEIKCPVKLLRL 97
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
GNF F+ SH D LG+++ GI REK GDI L E ++ + DYL+T+ + + +
Sbjct: 98 YGNFKFEKISHRDCLGALMSMGIVREKTGDIYLH-EDYVDIVIDESIDDYLLTNFKSIRH 156
Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIR 269
SV + + LE+ +SLR+D + S + L R+ N+++
Sbjct: 157 CSVKSKILDIDELEFSKQEFDVKLCSVSSLRLDNIISEVYNLPRATSTNIVK 208
>gi|288553144|ref|YP_003425079.1| putative RNA-binding S4 domain-containing protein [Bacillus
pseudofirmus OF4]
gi|288544304|gb|ADC48187.1| putative RNA-binding S4 domain protein [Bacillus pseudofirmus OF4]
Length = 257
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 86/185 (46%), Gaps = 2/185 (1%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V+ +L S + +DFL P + + ++ GG +ER R +
Sbjct: 15 VEQVLSWKEEVSVMHQERRTDFLDPREQDIVRLIIGNDDELSYQFFGGADDSERKRAYLC 74
Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFL 199
+ D +A SI F +H D LGS++ G+ REK GDI++ + Q +
Sbjct: 75 PSYLVIEQSDFNLAYFSINYPAKFITLTHSDVLGSLMNIGLKREKFGDIMI-TQDDIQLV 133
Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
V E+AD++ ++EK+G S+ I L L+ + T +S+R+D + S + L
Sbjct: 134 VASEIADFVKMNVEKIGKASIDLVPISLEQLKTPEEKWTEEGTTVSSMRLDVILSEIYNL 193
Query: 260 SRSKL 264
SR+K+
Sbjct: 194 SRAKV 198
>gi|194014420|ref|ZP_03053037.1| RNA-binding protein [Bacillus pumilus ATCC 7061]
gi|194013446|gb|EDW23011.1| RNA-binding protein [Bacillus pumilus ATCC 7061]
Length = 258
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 101/207 (48%), Gaps = 10/207 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +L + A + + +DFL P + ++ ++ + GGY AER R +
Sbjct: 16 VDQVLGWKKIALDQYRLKLTDFLDPREQFITQSVIQHADELGIMFFGGYEGAERKRALI- 74
Query: 141 HPEAL---TSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
+PE L T D ++ + + F H LGS++GTG+ R+K GD++ E+ Q
Sbjct: 75 YPEYLQPATQDAEL-SYFQVNYAKKFISLEHPKLLGSLIGTGLKRQKFGDLLF-SEEDVQ 132
Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
F+ ++AD++ L VG SVS I L+ +T + +SLR+DA+ +A
Sbjct: 133 FICTSDVADFVRAQLTHVGRASVSLEEITQADLKPVKSKTDIKEDTISSLRLDAVCAAIS 192
Query: 258 KLSRSKLVNLIRYSSLASLVQISAKAS 284
+ SR K L++ LV+++ K +
Sbjct: 193 RQSRQKAQLLVK----NGLVKVNWKVT 215
>gi|423457918|ref|ZP_17434715.1| hypothetical protein IEI_01058 [Bacillus cereus BAG5X2-1]
gi|401148302|gb|EJQ55795.1| hypothetical protein IEI_01058 [Bacillus cereus BAG5X2-1]
Length = 255
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 101/208 (48%), Gaps = 16/208 (7%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE +RA+ +V +DFL P + M + + DV G P AER R +
Sbjct: 15 VDKVLEW-KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVAVQFDGATPHAERKRALI- 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ E AQ
Sbjct: 72 YPDYLVVNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQI 130
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLA---LEYEPPRTKSFKTIEASLRVDALASA 255
+V E+ Y+ +L+ +G V VS + P+ L+ + + T+ +SLR+D + +
Sbjct: 131 VVAKEVVSYIEMNLQSIGKVKVSLS--PVQGEKILQMQETWGEKSGTV-SSLRLDVMLAE 187
Query: 256 GFKLSRSKLVNLIRYSSLASLVQISAKA 283
+SR K+ I+ LV+++ K
Sbjct: 188 MLHISRQKVQPFIK----NGLVKVNWKT 211
>gi|320546327|ref|ZP_08040646.1| S4 domain-containing protein YlmH [Streptococcus equinus ATCC 9812]
gi|320449048|gb|EFW89772.1| S4 domain-containing protein YlmH [Streptococcus equinus ATCC 9812]
Length = 261
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 92/192 (47%), Gaps = 8/192 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
++ I ++A+R +DFL P L+ + L V+ YP AE RL V
Sbjct: 17 IEKIDDIAQRVEETYAYSLTDFLNPRQLEIARSVLGNRGLRYFVSSDYYP-AEYARLLVA 75
Query: 141 HPE--ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-A 196
P+ L D +A L + N F +H +G++L GI R IGDI++ E G A
Sbjct: 76 -PDYYELNLDDFELALLEVKYNSKFNQLTHAQIMGTLLNRLGIKRHIIGDILV--ESGYA 132
Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
Q LV + DY ++ K+ SV+ IPL L ++ + +S+R+D + +
Sbjct: 133 QLLVTRNMVDYFRANVTKIAKASVNLKEIPLDNLIVGEKESQQLDIMVSSMRLDKVLATV 192
Query: 257 FKLSRSKLVNLI 268
KLSRS+ + L+
Sbjct: 193 LKLSRSQAIQLV 204
>gi|423401260|ref|ZP_17378433.1| hypothetical protein ICW_01658 [Bacillus cereus BAG2X1-2]
gi|423478036|ref|ZP_17454751.1| hypothetical protein IEO_03494 [Bacillus cereus BAG6X1-1]
gi|401654250|gb|EJS71793.1| hypothetical protein ICW_01658 [Bacillus cereus BAG2X1-2]
gi|402428198|gb|EJV60295.1| hypothetical protein IEO_03494 [Bacillus cereus BAG6X1-1]
Length = 255
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 101/208 (48%), Gaps = 16/208 (7%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE +RA+ +V +DFL P + M + + DV G P AER R +
Sbjct: 15 VDKVLEW-KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVAVQFDGATPHAERKRALI- 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ E AQ
Sbjct: 72 YPDYLEVNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQI 130
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLA---LEYEPPRTKSFKTIEASLRVDALASA 255
+V E+ Y+ +L+ +G V VS + P+ L+ + + T+ +SLR+D + +
Sbjct: 131 VVAKEVVSYIEMNLQSIGKVKVSLS--PVQGEKILQMQETWGEKSGTV-SSLRLDVMLAE 187
Query: 256 GFKLSRSKLVNLIRYSSLASLVQISAKA 283
+SR K+ I+ LV+++ K
Sbjct: 188 MLHISRQKVQPFIK----NGLVKVNWKT 211
>gi|268319699|ref|YP_003293355.1| hypothetical protein FI9785_1227 [Lactobacillus johnsonii FI9785]
gi|262398074|emb|CAX67088.1| hypothetical protein predicted by Glimmer/Critica [Lactobacillus
johnsonii FI9785]
Length = 265
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 84/177 (47%), Gaps = 5/177 (2%)
Query: 94 RREVLHSDFLTPPVLKESMMALEKLADV-KAVAQGGYPQAERCRLSV-GHPEALTSDPDI 151
+ E + +DFL P +E + E + + + GG+ AE+ R+ + E D
Sbjct: 34 KNEPILTDFLNP---REQYIFREIVGGYAQLYSFGGFSNAEKKRMLLCEWSEGYKPDEFN 90
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
++ L I + +H LG + GI + GDII QF V EL DY +
Sbjct: 91 ISLLEIAYPQKWSELTHSQILGVLTHLGIELDTFGDIINDENGNWQFFVKAELKDYFLEE 150
Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
++++G V + +PL + + ++ ++ SLR+DA+ SA LSRS++ +I
Sbjct: 151 IDRIGRTKVKLSELPLSKVLMQEDDSEEMTSVTISLRLDAVISAITNLSRSQVKKII 207
>gi|30021986|ref|NP_833617.1| RNA binding protein [Bacillus cereus ATCC 14579]
gi|296504392|ref|YP_003666092.1| RNA binding protein [Bacillus thuringiensis BMB171]
gi|423585693|ref|ZP_17561780.1| hypothetical protein IIE_01105 [Bacillus cereus VD045]
gi|423628992|ref|ZP_17604741.1| hypothetical protein IK5_01844 [Bacillus cereus VD154]
gi|423641024|ref|ZP_17616642.1| hypothetical protein IK9_00969 [Bacillus cereus VD166]
gi|423656758|ref|ZP_17632057.1| hypothetical protein IKG_03746 [Bacillus cereus VD200]
gi|29897542|gb|AAP10818.1| RNA binding protein [Bacillus cereus ATCC 14579]
gi|296325444|gb|ADH08372.1| RNA binding protein [Bacillus thuringiensis BMB171]
gi|401233039|gb|EJR39535.1| hypothetical protein IIE_01105 [Bacillus cereus VD045]
gi|401268537|gb|EJR74585.1| hypothetical protein IK5_01844 [Bacillus cereus VD154]
gi|401280085|gb|EJR86007.1| hypothetical protein IK9_00969 [Bacillus cereus VD166]
gi|401290499|gb|EJR96193.1| hypothetical protein IKG_03746 [Bacillus cereus VD200]
Length = 255
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 99/206 (48%), Gaps = 12/206 (5%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE +RA+ +V +DFL P + M + + DV G P AER R +
Sbjct: 15 VDKVLEW-KRAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKRALI- 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ E AQ
Sbjct: 72 YPDYLELNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQI 130
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGF 257
+V E+ Y+ +L+ +G V VS + L+ + + T+ +SLR+D + +
Sbjct: 131 VVAKEIVSYIEMNLQSIGKVKVSLASVQGEQILQIDETWGEKSGTV-SSLRLDVMLAEML 189
Query: 258 KLSRSKLVNLIRYSSLASLVQISAKA 283
LSR K+ I+ LV+++ K
Sbjct: 190 HLSRQKVQPFIK----NGLVKVNWKT 211
>gi|423615839|ref|ZP_17591673.1| hypothetical protein IIO_01165 [Bacillus cereus VD115]
gi|401260376|gb|EJR66549.1| hypothetical protein IIO_01165 [Bacillus cereus VD115]
Length = 255
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 100/207 (48%), Gaps = 14/207 (6%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE +RA+ +V +DFL P + M + + DV G P AER R ++
Sbjct: 15 VDKVLEW-KRAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFDGATPYAER-RRALI 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ E AQ
Sbjct: 72 YPDYLELNEEEFQVEVLEIDYPSKFYTLEHWQILGTFMSLGLTREKCGDILLQ-ENRAQI 130
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRI--PLLALEYEPPRTKSFKTIEASLRVDALASAG 256
+V E+ Y+ +L+ +G V VS + + + +E KS +SLR+D + +
Sbjct: 131 VVAKEIVSYIEMNLQAIGKVKVSLSAVQGEQILQTHETWGEKSGTV--SSLRLDVMLAEM 188
Query: 257 FKLSRSKLVNLIRYSSLASLVQISAKA 283
+SR K+ I+ LV+++ K
Sbjct: 189 LHISRQKVQPFIK----NGLVKVNWKT 211
>gi|392531408|ref|ZP_10278545.1| cell shape determination protein [Carnobacterium maltaromaticum
ATCC 35586]
Length = 259
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 82/174 (47%), Gaps = 11/174 (6%)
Query: 100 SDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERCRLSVGHPEALT--SDPDIVAA 154
+DFL P M +E L D+K GGY AER R+ + P+ T + +
Sbjct: 36 TDFLDP----RQMYIVETLVGKRDLKLYYFGGYEAAERKRVFIC-PDYYTPTQEEFKIDI 90
Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 214
I F SH LG+++ G+ RE GDI+ GE+ QF V + +Y+ ++K
Sbjct: 91 CEIRYPTKFAKLSHSKILGTLMSVGVKREYFGDIVFDGER-WQFFVDVGMKNYVENQVDK 149
Query: 215 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+GNVSV + + +S+R+DA+ ++ FK+SR + LI
Sbjct: 150 IGNVSVRIETRDYTEIITPIDDWTLVQDTVSSMRLDAIIASIFKISRQRAKQLI 203
>gi|295091872|emb|CBK77979.1| Uncharacterized conserved protein, contains S4-like domain
[Clostridium cf. saccharolyticum K10]
Length = 251
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 96/197 (48%), Gaps = 18/197 (9%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMM--ALEK-LADVKAVAQGGYPQAER---C 135
K I+E+A R ++DFL L E + ++E+ L V+ + GGY AER C
Sbjct: 10 KRIMELAALCYQRDIPSYTDFLN---LNEQTVFHSIERSLPPVRYLITGGYEPAERKIVC 66
Query: 136 RLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
L +A I+ + F + +H D+LG+++ GI R +GDI++ E G
Sbjct: 67 FLPSYEEDATNLPISILKVEPVNARFA-EGLTHRDYLGALMNLGIERGMVGDIVIN-EDG 124
Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASL---RVDAL 252
+ +A+Y+ L +V SVSCT +P + E + F+ I S+ R+D +
Sbjct: 125 CFIFCLERMAEYISGELRQVRRTSVSCTAVPAFSCRVE----QKFEEIRGSIASPRLDNV 180
Query: 253 ASAGFKLSRSKLVNLIR 269
S + SR+K++ I+
Sbjct: 181 LSLVYHTSRTKILPYIQ 197
>gi|418035959|ref|ZP_12674397.1| hypothetical protein LDBUL1519_01097 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
gi|354689118|gb|EHE89130.1| hypothetical protein LDBUL1519_01097 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
Length = 265
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 7/168 (4%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLSVG-HPEALTSDPDIVAALS 156
+DFL P +E +A +A+ Q GGY +AE+CRL + E L D V
Sbjct: 40 TDFLDP----RQRQIMETIAGGEAIVQAFGGYEEAEKCRLYISLEWENLRPDDYQVQLFE 95
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
I F H LGS+ +G+ + GDII G+ QF ELA + + ++++G
Sbjct: 96 IEYPQKFASLRHSQILGSLANSGVKTDTFGDIITDGQGRWQFFAEKELAGFFASQIDRMG 155
Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKL 264
V V L ++ + +S+R+DA+ +A SRS++
Sbjct: 156 PVKVRLEEKALKDRLEAEDNSEIISAVASSMRLDAVLAALSNKSRSQV 203
>gi|414083300|ref|YP_006992008.1| S4 domain-containing protein [Carnobacterium maltaromaticum LMA28]
gi|412996884|emb|CCO10693.1| S4 domain protein [Carnobacterium maltaromaticum LMA28]
Length = 259
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 82/174 (47%), Gaps = 11/174 (6%)
Query: 100 SDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERCRLSVGHPEALT--SDPDIVAA 154
+DFL P M +E L D+K GGY AER R+ + P+ T + +
Sbjct: 36 TDFLDP----RQMYIVESLVGKRDLKLYYFGGYEAAERKRVFIC-PDYYTPTQEEFKIDI 90
Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 214
I F SH LG+++ G+ RE GDI+ GE+ QF V + +Y+ ++K
Sbjct: 91 CEIRYPTKFAKLSHSKILGTLMSVGVKREYFGDIVFDGERW-QFFVDVGMKNYVENQVDK 149
Query: 215 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+GNVSV + + +S+R+DA+ ++ FK+SR + LI
Sbjct: 150 IGNVSVRIETRDYTEIITPIDDWTLVQDTVSSMRLDAIIASIFKISRQRAKQLI 203
>gi|384181712|ref|YP_005567474.1| S4 domain-containing protein [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|324327796|gb|ADY23056.1| S4 domain protein [Bacillus thuringiensis serovar finitimus
YBT-020]
Length = 255
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 101/208 (48%), Gaps = 16/208 (7%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE +RA+ +V +DFL P + M + + DV G QAER R +
Sbjct: 15 VDKVLEW-KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVAVQFDGATSQAERKRALI- 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ E AQ
Sbjct: 72 YPDYLVINEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQI 130
Query: 199 LVVPELADYLITSLEKVGNVSVSCT---RIPLLALEYEPPRTKSFKTIEASLRVDALASA 255
+V E+ Y+ +L+ +G V VS + R +L ++ E KS +SLR+D + +
Sbjct: 131 VVAKEVVSYIEMNLQSIGKVKVSLSPVQREKILQIQ-ETWGEKSGTV--SSLRLDVMLAE 187
Query: 256 GFKLSRSKLVNLIRYSSLASLVQISAKA 283
+SR K+ I+ LV+++ K
Sbjct: 188 MLHISRQKVQPFIK----NGLVKVNWKT 211
>gi|402297354|ref|ZP_10817126.1| putative RNA-binding S4 domain-containing protein [Bacillus
alcalophilus ATCC 27647]
gi|401727404|gb|EJT00594.1| putative RNA-binding S4 domain-containing protein [Bacillus
alcalophilus ATCC 27647]
Length = 239
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 91/171 (53%), Gaps = 12/171 (7%)
Query: 100 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAAL- 155
+DFL P +LK +++ +++ DV+ GG ER R + P + +D + A
Sbjct: 16 TDFLDPREQEILK-TVVGIDE--DVQLSFFGGRGDIERQRAHLA-PSYIVADEETFACFL 71
Query: 156 -SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 214
SI F +H D LG+++ G+ REK GDII+ G Q ++ E+A Y+ +L
Sbjct: 72 YSIEYPSKFVTLTHRDILGALMSIGLKREKFGDIIING-TDIQVILAKEVASYVEVNLTS 130
Query: 215 VGNVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKL 264
+G +V R+P A LE + TI +SLR+DA+ + +++SRSK+
Sbjct: 131 IGKATVQLKRLPFSAQLELVDSWNERSGTI-SSLRLDAVLAEIYRVSRSKI 180
>gi|42518903|ref|NP_964833.1| hypothetical protein LJ0978 [Lactobacillus johnsonii NCC 533]
gi|417837781|ref|ZP_12484019.1| hypothetical protein, contains S4-like RNA binding domain
containing protein [Lactobacillus johnsonii pf01]
gi|41583189|gb|AAS08799.1| hypothetical protein LJ_0978 [Lactobacillus johnsonii NCC 533]
gi|338761324|gb|EGP12593.1| hypothetical protein, contains S4-like RNA binding domain
containing protein [Lactobacillus johnsonii pf01]
Length = 265
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 83/177 (46%), Gaps = 5/177 (2%)
Query: 94 RREVLHSDFLTPPVLKESMMALEKLADV-KAVAQGGYPQAERCR-LSVGHPEALTSDPDI 151
+ E + +DFL P +E + E + + + GG+ AE+ R L E D
Sbjct: 34 KNEPILTDFLNP---REQYIFREIVGGYAQLYSFGGFSNAEKKRMLLCDWSEGYKPDEFN 90
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
++ L I + +H LG + GI + GDII QF + EL DY +
Sbjct: 91 ISLLEIAYPQKWSELTHSQILGVLTHLGIELDTFGDIINDENGNWQFFIKAELKDYFLEE 150
Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
++++G V + +PL + + ++ ++ SLR+DA+ SA LSRS++ +I
Sbjct: 151 IDRIGRTKVKLSELPLSKVLVQEDDSEEMTSVAISLRLDAVISAITNLSRSQVKKII 207
>gi|375008102|ref|YP_004981735.1| hypothetical protein [Geobacillus thermoleovorans CCB_US3_UF5]
gi|359286951|gb|AEV18635.1| hypothetical protein GTCCBUS3UF5_13210 [Geobacillus thermoleovorans
CCB_US3_UF5]
Length = 257
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 94/204 (46%), Gaps = 8/204 (3%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ +LE S + +DFL P + DV+A GG P ER R+ +
Sbjct: 15 IDQVLEWKEMVSRQYAPKLTDFLDPREQQIVQSIAGGAEDVRAFFFGGAPFVERKRVFLA 74
Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ-GEKGAQF 198
P + D + ++ F H D LG+++ G+ R K GDI+++ GE QF
Sbjct: 75 PPYIDPEEEDYGIVLFAVRYPAKFVSLEHRDVLGALMSLGLRRGKFGDILIRDGE--IQF 132
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
V E+ADY+ +E +G V+ +PL A + +SLR+DA+ + F+
Sbjct: 133 FVAAEVADYVRLHVETIGKAPVALEPLPLSAAMPLAETWEEGTVTVSSLRLDAVLAQAFR 192
Query: 259 LSRSKLVNLIRYSSLASLVQISAK 282
L+R K L+ + LV+++ K
Sbjct: 193 LAREKARALVE----SGLVKVNWK 212
>gi|168334455|ref|ZP_02692626.1| RNA-binding S4 [Epulopiscium sp. 'N.t. morphotype B']
Length = 249
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 75/144 (52%), Gaps = 3/144 (2%)
Query: 127 GGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 186
GGYP A R + + + +P + + + FG + +H DFLGSIL GI+R KIG
Sbjct: 55 GGYPXASRSIVCITPFDEPLVNPIAILKIDVKTGFG-KELTHRDFLGSILSLGISRAKIG 113
Query: 187 DIILQGEKGAQFLVVPELADYLITSLEKVGNVS-VSCTRIPLLALEYEPPRTKSFKTIEA 245
DI++ GA ++A+Y+ +L K+ + + + I LE P+ T +
Sbjct: 114 DIVVTS-FGAYVFCHIDVAEYIRFNLSKIARFTKIETSIISNNELEIPVPKFTEITTSVS 172
Query: 246 SLRVDALASAGFKLSRSKLVNLIR 269
SLRVD + A F LSR++ LI+
Sbjct: 173 SLRVDVILCAIFNLSRNESSKLIK 196
>gi|157692221|ref|YP_001486683.1| hypothetical protein BPUM_1440 [Bacillus pumilus SAFR-032]
gi|157680979|gb|ABV62123.1| hypothetical protein BPUM_1440 [Bacillus pumilus SAFR-032]
Length = 258
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 101/207 (48%), Gaps = 10/207 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +L + A + + +DFL P + ++ ++ + GGY AER R +
Sbjct: 16 VDQVLGWKKIALDQYRLKLTDFLDPREQFITQSVIQHADELGIMFFGGYEGAERKRALI- 74
Query: 141 HPEAL---TSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
+PE L T D ++ + + F H LGS++GTG+ R+K GD++ E+ Q
Sbjct: 75 YPEYLEPATQDAEL-SYFQVNYAKKFISLEHPKLLGSLIGTGLKRQKFGDLLF-SEEDVQ 132
Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
F+ ++AD++ L VG SVS I L+ +T + +SLR+DA+ +A
Sbjct: 133 FICTSDVADFVRAQLTHVGRASVSLEEITQADLKPVISKTDIKEDTISSLRLDAVCAAIS 192
Query: 258 KLSRSKLVNLIRYSSLASLVQISAKAS 284
+ SR K L++ LV+++ K +
Sbjct: 193 RQSRQKAQLLVK----NGLVKVNWKVT 215
>gi|347534667|ref|YP_004841337.1| hypothetical protein LSA_10060 [Lactobacillus sanfranciscensis TMW
1.1304]
gi|345504723|gb|AEN99405.1| hypothetical protein LSA_10060 [Lactobacillus sanfranciscensis TMW
1.1304]
Length = 263
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 88/180 (48%), Gaps = 6/180 (3%)
Query: 86 EMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL 145
+ RA++ + +DFL + + + +++ + GGY +E R + +P+
Sbjct: 24 DWIERANTEYRPILTDFLNGREIYLLQTLVNRYPNLRLASNGGYINSEMKR-GLIYPDYF 82
Query: 146 T---SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVP 202
+ +D ++ A L + F H LG+++G GI R +GDII GEK + +V
Sbjct: 83 SPRSADFEL-AILKVDYPVKFATLKHNQILGTVMGAGIERNVLGDIITDGEKW-EMVVEK 140
Query: 203 ELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRS 262
+A YLI S+++VG + V +P + +K SLR+D + +A F +SR+
Sbjct: 141 SMAPYLINSIDQVGRIKVKLVSMPNNEVLNVIDDSKVVNLTLPSLRMDVIIAAVFHISRN 200
>gi|423649759|ref|ZP_17625329.1| hypothetical protein IKA_03546 [Bacillus cereus VD169]
gi|401283039|gb|EJR88936.1| hypothetical protein IKA_03546 [Bacillus cereus VD169]
Length = 255
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 99/206 (48%), Gaps = 12/206 (5%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE +RA+ +V +DFL P + M + + D+ G P AER R +
Sbjct: 15 VDKVLEW-KRAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDIAVQFGGATPNAERKRALI- 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ E AQ
Sbjct: 72 YPDYLELNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQI 130
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGF 257
+V E+ Y+ +L+ +G V VS + L+ + + T+ +SLR+D + +
Sbjct: 131 VVAKEIVSYIEMNLQSIGKVKVSLASVQGEQILQIDETWGEKSGTV-SSLRLDVMLAEML 189
Query: 258 KLSRSKLVNLIRYSSLASLVQISAKA 283
LSR K+ I+ LV+++ K
Sbjct: 190 HLSRQKVQPFIK----NGLVKVNWKT 211
>gi|229174564|ref|ZP_04302094.1| RNA-binding S4 domain protein [Bacillus cereus MM3]
gi|228608869|gb|EEK66161.1| RNA-binding S4 domain protein [Bacillus cereus MM3]
Length = 241
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 97/200 (48%), Gaps = 15/200 (7%)
Query: 89 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
+RA+ +V +DFL P + M + + DV G P AER R + +P+ L +
Sbjct: 8 KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVAVQFDGATPHAERKRALI-YPDYLVVN 65
Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 206
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 66 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQIVVAKEVVS 124
Query: 207 YLITSLEKVGNVSVSCTRIPLLA---LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 263
Y+ +L+ +G V VS + P+ L+ + + T+ +SLR+D + + +SR K
Sbjct: 125 YIEMNLQSIGKVKVSLS--PVQGEKILQMQETWGEKSGTV-SSLRLDVMLAEMLHISRQK 181
Query: 264 LVNLIRYSSLASLVQISAKA 283
+ I+ LV+++ K
Sbjct: 182 VQPFIK----NGLVKVNWKT 197
>gi|365159325|ref|ZP_09355506.1| hypothetical protein HMPREF1014_00969 [Bacillus sp. 7_6_55CFAA_CT2]
gi|423412299|ref|ZP_17389419.1| hypothetical protein IE1_01603 [Bacillus cereus BAG3O-2]
gi|423426032|ref|ZP_17403063.1| hypothetical protein IE5_03721 [Bacillus cereus BAG3X2-2]
gi|423431916|ref|ZP_17408920.1| hypothetical protein IE7_03732 [Bacillus cereus BAG4O-1]
gi|423503426|ref|ZP_17480018.1| hypothetical protein IG1_00992 [Bacillus cereus HD73]
gi|363625323|gb|EHL76364.1| hypothetical protein HMPREF1014_00969 [Bacillus sp. 7_6_55CFAA_CT2]
gi|401104367|gb|EJQ12344.1| hypothetical protein IE1_01603 [Bacillus cereus BAG3O-2]
gi|401110779|gb|EJQ18678.1| hypothetical protein IE5_03721 [Bacillus cereus BAG3X2-2]
gi|401116672|gb|EJQ24510.1| hypothetical protein IE7_03732 [Bacillus cereus BAG4O-1]
gi|402459647|gb|EJV91384.1| hypothetical protein IG1_00992 [Bacillus cereus HD73]
Length = 255
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 100/208 (48%), Gaps = 16/208 (7%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE +RA+ +V +DFL P + M + + DV G P AER R +
Sbjct: 15 VDKVLEW-KRAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKRALI- 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ E AQ
Sbjct: 72 YPDYLELNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQI 130
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRI---PLLALEYEPPRTKSFKTIEASLRVDALASA 255
+V E+ Y+ +L+ +G V VS + +L + +E KS +SLR+D + +
Sbjct: 131 VVAKEIVSYIEMNLQSIGKVKVSLASVQGEQILQI-HETWGEKSGTV--SSLRLDVMLAE 187
Query: 256 GFKLSRSKLVNLIRYSSLASLVQISAKA 283
LSR K+ I+ LV+++ K
Sbjct: 188 MLHLSRQKVQPFIK----NGLVKVNWKT 211
>gi|423582107|ref|ZP_17558218.1| hypothetical protein IIA_03622 [Bacillus cereus VD014]
gi|423635330|ref|ZP_17610983.1| hypothetical protein IK7_01739 [Bacillus cereus VD156]
gi|401212986|gb|EJR19727.1| hypothetical protein IIA_03622 [Bacillus cereus VD014]
gi|401278081|gb|EJR84017.1| hypothetical protein IK7_01739 [Bacillus cereus VD156]
Length = 255
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 100/208 (48%), Gaps = 16/208 (7%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE +RA+ +V +DFL P + M + + DV G P AER R +
Sbjct: 15 VDKVLEW-KRAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKRALI- 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ E AQ
Sbjct: 72 YPDYLELNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQI 130
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRI---PLLALEYEPPRTKSFKTIEASLRVDALASA 255
+V E+ Y+ +L+ +G V VS + +L + +E KS +SLR+D + +
Sbjct: 131 VVAKEIVSYIEMNLQSIGKVKVSLASVQGEKILQI-HETWGEKSGTV--SSLRLDVMLAE 187
Query: 256 GFKLSRSKLVNLIRYSSLASLVQISAKA 283
LSR K+ I+ LV+++ K
Sbjct: 188 MLHLSRQKVQPFIK----NGLVKVNWKT 211
>gi|357636717|ref|ZP_09134592.1| S4 domain protein [Streptococcus macacae NCTC 11558]
gi|357585171|gb|EHJ52374.1| S4 domain protein [Streptococcus macacae NCTC 11558]
Length = 264
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 94/193 (48%), Gaps = 16/193 (8%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAALSI 157
+DF+ P +K M + D++ Y +E RL + + E +D +I + L I
Sbjct: 37 TDFINPRQVK-VMQTIISQTDLQVYLSSDYIPSEYARLLIAPVYYELDIADFEI-SLLEI 94
Query: 158 TGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
N F +H LG++L G+ R+ +GDII+Q E+ AQF + + YL + K+G
Sbjct: 95 NYNNKFNRLTHAQILGTLLNKLGVKRQILGDIIVQ-ERRAQFFIESSMVSYLTAQVSKIG 153
Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSR---SKLV-------N 266
+VS ++ L P + +S+R+D + S+ K+SR SKL+ N
Sbjct: 154 KAAVSFKKLELNEQLENPSDYTEVDILVSSMRLDKVISSVLKVSRGTASKLIEGEKVKLN 213
Query: 267 LIRYSSLASLVQI 279
+ S ++ LV++
Sbjct: 214 YLVQSKISCLVEV 226
>gi|422759405|ref|ZP_16813167.1| RNA binding protein [Streptococcus dysgalactiae subsp. dysgalactiae
ATCC 27957]
gi|322412240|gb|EFY03148.1| RNA binding protein [Streptococcus dysgalactiae subsp. dysgalactiae
ATCC 27957]
Length = 263
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 91/189 (48%), Gaps = 12/189 (6%)
Query: 86 EMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHP 142
+M R S + +DFL P +LK +L D+K + Y +E R+ V
Sbjct: 24 DMINRVDSHYFLEVTDFLNPREITILK----SLVAPTDLKVFSSTDYYPSEYGRVIVVPD 79
Query: 143 EALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFL 199
+ D +A + IT F +HG LG+++ GI R +GDI + E G AQ +
Sbjct: 80 YYDLDEADFQIALVEITYQAKFNQLTHGQILGTLINELGIKRNLLGDIFV--ETGYAQLM 137
Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
+ +L DY++T++ K+ SVS IPL L + + +SLR+D L + K
Sbjct: 138 INRQLLDYVLTTISKIARASVSLKEIPLNQLIKSSNDAQLVDIMVSSLRLDRLVATVLKK 197
Query: 260 SRSKLVNLI 268
SR++ + LI
Sbjct: 198 SRAQAMTLI 206
>gi|227889762|ref|ZP_04007567.1| possible ribosomal protein S4e [Lactobacillus johnsonii ATCC 33200]
gi|227849626|gb|EEJ59712.1| possible ribosomal protein S4e [Lactobacillus johnsonii ATCC 33200]
Length = 265
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 82/180 (45%), Gaps = 11/180 (6%)
Query: 94 RREVLHSDFLTPPVLKESMMALEKLADVKAVAQ----GGYPQAERCRLSV-GHPEALTSD 148
+ E + +DFL P K+ V AQ GG+ AE+ RL + E D
Sbjct: 34 KNEPILTDFLNP----REQYIFRKI--VGGYAQLYSFGGFSNAEKKRLLLCEWSEGYKPD 87
Query: 149 PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYL 208
++ L I + +H LG + GI + GDII QF V EL DY
Sbjct: 88 EFNISLLEIAYPQKWSELTHSQILGVLTHLGIELDTFGDIINDENGNWQFFVKAELKDYF 147
Query: 209 ITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+ ++++G V + +PL + + ++ ++ SLR+DA+ SA LSRS++ +I
Sbjct: 148 LEEIDRIGRTKVKLSELPLSKVLVQEDDSEEMTSVAISLRLDAVISAITNLSRSQVKKII 207
>gi|160880492|ref|YP_001559460.1| RNA-binding S4 domain-containing protein [Clostridium
phytofermentans ISDg]
gi|160429158|gb|ABX42721.1| RNA-binding S4 domain protein [Clostridium phytofermentans ISDg]
Length = 263
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 98/203 (48%), Gaps = 22/203 (10%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
K ILE A+ A + +++DFL + ++L + GGY AER R+ H
Sbjct: 12 KIILESAKSAYHKEICVYTDFLNINEISIFHSMEKELPLLAYSMYGGYEGAERVRICF-H 70
Query: 142 PEALTSDPDIVAALSITGNFGFQ-----PCS--------HGDFLGSILGTGIAREKIGDI 188
+ + +I+ ++ Q P S H D+LG+IL GI R K+GDI
Sbjct: 71 GDMVKEHGNIMLQTEDKNDYPIQCLRIYPASEKFAGELDHRDYLGAILNVGIERSKLGDI 130
Query: 189 ILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---A 245
+++G K A L+D++ TSL KV + + R+ ++ + E T SF+ + A
Sbjct: 131 LVRG-KEAYCYCDSLLSDFITTSLSKVRH---NVVRVEMIKPD-EVQATISFREVTGSVA 185
Query: 246 SLRVDALASAGFKLSRSKLVNLI 268
S R+D+L + F SRS + LI
Sbjct: 186 SFRLDSLIALAFHTSRSSITGLI 208
>gi|228987042|ref|ZP_04147167.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228772636|gb|EEM21077.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 241
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 98/200 (49%), Gaps = 15/200 (7%)
Query: 89 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
+RA+ +V +DFL P + M + + DV G QAER R + +P+ L +
Sbjct: 8 KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVAVQFDGATSQAERKRALI-YPDYLVVN 65
Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 206
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 66 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQIVVAKEVVS 124
Query: 207 YLITSLEKVGNVSVSCTRIPLLA---LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 263
Y+ +L+ +G V VS + P+ L+ + + T+ +SLR+D + + +SR K
Sbjct: 125 YIEMNLQSIGKVKVSLS--PVQGEKILQIQETWGEKSGTV-SSLRLDVMLAEMLHISRQK 181
Query: 264 LVNLIRYSSLASLVQISAKA 283
+ LI+ LV+++ K
Sbjct: 182 VQPLIK----NGLVKVNWKT 197
>gi|332638197|ref|ZP_08417060.1| RNA-binding S4 domain-containing protein [Weissella cibaria KACC
11862]
Length = 261
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 5/172 (2%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAALSI 157
++FL P + + D+K +GGY AE R + + + SD ++ A ++I
Sbjct: 36 TNFLNPRQRYIIETLVNQHDDLKWQHEGGYADAESARTVIAPAYYDIQQSDFEL-AVIAI 94
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA-QFLVVPELADYLITSLEKVG 216
F H LG+++ GI R+ IGDII GE+G FL +A Y+ T+++ +G
Sbjct: 95 NYPQKFAELHHSTILGTLMNNGITRDSIGDII-SGEEGTWHFLTTVPMATYIQTTMDHIG 153
Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
V L + T +SLR+D L + G+ +SR+ L+
Sbjct: 154 KTKVRFETASLTDISAPIEEWTEIDTTVSSLRLDTLVANGYNVSRTHAKELV 205
>gi|153953820|ref|YP_001394585.1| hypothetical protein CKL_1195 [Clostridium kluyveri DSM 555]
gi|219854436|ref|YP_002471558.1| hypothetical protein CKR_1093 [Clostridium kluyveri NBRC 12016]
gi|146346701|gb|EDK33237.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
gi|219568160|dbj|BAH06144.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 258
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 89/196 (45%), Gaps = 5/196 (2%)
Query: 95 REVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAA 154
+ + S+F PP L +++ + + + G + AER L E L P V
Sbjct: 33 KNIFTSEFY-PPNLWKTLEDFKGQVGINVYSHGIFENAERKILVFSQSEVLDY-P--VRL 88
Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 214
+ I + F H D+LG+++ GI R K GD+I++ V +++DY+ +L
Sbjct: 89 MKIKCSSKFVSLQHKDYLGALMALGIKRGKFGDLIVKENNECYAAVHEDISDYVYMNLSS 148
Query: 215 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSS-L 273
+G + T + E K+F +SLR+D L S+ ++SRSK L++ L
Sbjct: 149 IGKCECNITFLDTNITEIPDYNFKTFDINTSSLRIDCLLSSMCRISRSKSEELMKQGKVL 208
Query: 274 ASLVQISAKASAIRSS 289
+ ++ K I S
Sbjct: 209 LDYLPVTKKDKTINDS 224
>gi|304440209|ref|ZP_07400099.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC
BAA-1640]
gi|304371258|gb|EFM24874.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC
BAA-1640]
Length = 249
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 92/201 (45%), Gaps = 23/201 (11%)
Query: 69 LKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTP-------PVLKESMMALEKLADV 121
L + D + E++K +E A + +DFL P P++ ++ E
Sbjct: 4 LDFIQDNSLKEKLKQTIEKIEIADKSNRSIDTDFLDPYERSIIRPIIGHNLEYYE----- 58
Query: 122 KAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIA 181
GGY +AER + + P ++ LSI SH + LGS+LG G+
Sbjct: 59 ----DGGYDEAERKIIQIYPPYIERTEK-----LSIIKIISKNKISHREILGSVLGLGLV 109
Query: 182 REKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFK 241
REKIGDI+ G+ +V ELA+Y+ ++LEKVGN ++ + + + ++ F
Sbjct: 110 REKIGDIVSNGDFEHYLIVKNELANYIHSNLEKVGNYKINISFSDKVVCSEKKFVSREF- 168
Query: 242 TIEASLRVDALASAGFKLSRS 262
+ S R+D S F + R
Sbjct: 169 -VVKSKRLDLFISKAFAIRRD 188
>gi|331091119|ref|ZP_08339961.1| hypothetical protein HMPREF9477_00604 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330405341|gb|EGG84877.1| hypothetical protein HMPREF9477_00604 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 251
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 93/191 (48%), Gaps = 8/191 (4%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
K +LE++R A + V +SDFL L + + GGY +ER ++
Sbjct: 10 KRLLELSRVAYQKGIVTYSDFLNLNELNILHTTPKNEFFTQYETFGGYSDSER-QMVAFL 68
Query: 142 PEALTSD---PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
P+AL P V +S + SH D+LG+IL GI R K+GDI+L G +
Sbjct: 69 PDALYYAHFYPIKVLKISPLQKKFAESLSHRDYLGAILNLGIDRCKLGDILLID--GDAY 126
Query: 199 LVVPE-LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
L V E LAD++ +L ++ + SV Y P + K AS+R+D+L S F
Sbjct: 127 LFVQESLADFICRNLTRIRHTSVYVEVEDEQTFSYTPA-IEEIKGTVASVRLDSLLSLVF 185
Query: 258 KLSRSKLVNLI 268
SRSKLV LI
Sbjct: 186 PASRSKLVPLI 196
>gi|429204845|ref|ZP_19196126.1| RNA binding protein [Lactobacillus saerimneri 30a]
gi|428146707|gb|EKW98942.1| RNA binding protein [Lactobacillus saerimneri 30a]
Length = 264
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 87/173 (50%), Gaps = 5/173 (2%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 157
++FL P + + + + DV+ GGY AER R ++ +PE T ++ D V L I
Sbjct: 36 TEFLDPRMQYIAQSLVGQRDDVRVSFFGGYANAERKR-ALFYPEYFTPTEADFKVVPLEI 94
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
F +HG LG+ + G+ R +GDII G++ Q LV +LA YL+ +++VG
Sbjct: 95 GYPQKFSQLAHGQILGTFVNAGLDRNVLGDIITDGQRW-QILVNQDLAAYLVGQIDRVGK 153
Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIE-ASLRVDALASAGFKLSRSKLVNLIR 269
+ V ++ L L + +S R+D++ + + +SR +LI+
Sbjct: 154 IKVRLQQLSLADLLTPQADDAELMVLNLSSSRLDSVIAGAYNISRKSAKDLIK 206
>gi|402555979|ref|YP_006597250.1| S4 domain-containing protein [Bacillus cereus FRI-35]
gi|401797189|gb|AFQ11048.1| S4 domain protein [Bacillus cereus FRI-35]
Length = 255
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 101/208 (48%), Gaps = 16/208 (7%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE +RA+ +V +DFL P + M + + DV G QAER R +
Sbjct: 15 VDKVLEW-KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVAVQFDGATSQAERKRALI- 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ E AQ
Sbjct: 72 YPDYLVVNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQI 130
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLA---LEYEPPRTKSFKTIEASLRVDALASA 255
+V E+ Y+ +L+ +G V VS + P+ L+ + + T+ +SLR+D + +
Sbjct: 131 VVAKEVVSYIEMNLQSIGKVKVSLS--PVQGEKILQIQETWGEKSGTV-SSLRLDVMLAE 187
Query: 256 GFKLSRSKLVNLIRYSSLASLVQISAKA 283
+SR K+ I+ LV+++ K
Sbjct: 188 MLHISRQKVQPFIK----NGLVKVNWKT 211
>gi|42782990|ref|NP_980237.1| S4 domain-containing protein [Bacillus cereus ATCC 10987]
gi|42738917|gb|AAS42845.1| S4 domain protein [Bacillus cereus ATCC 10987]
Length = 255
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 101/208 (48%), Gaps = 16/208 (7%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE +RA+ +V +DFL P + M + + DV G QAER R +
Sbjct: 15 VDKVLEW-KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVAVQFDGATSQAERKRALI- 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ E AQ
Sbjct: 72 YPDYLVVNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQI 130
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLA---LEYEPPRTKSFKTIEASLRVDALASA 255
+V E+ Y+ +L+ +G V VS + P+ L+ + + T+ +SLR+D + +
Sbjct: 131 VVAKEVVSYIEMNLQSIGKVKVSLS--PVQGEKILQIQETWGEKSGTV-SSLRLDVMLAE 187
Query: 256 GFKLSRSKLVNLIRYSSLASLVQISAKA 283
+SR K+ I+ LV+++ K
Sbjct: 188 MLHISRQKVQPFIK----NGLVKVNWKT 211
>gi|283797929|ref|ZP_06347082.1| putative S4 domain protein [Clostridium sp. M62/1]
gi|291074397|gb|EFE11761.1| S4 domain protein [Clostridium sp. M62/1]
Length = 251
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 95/197 (48%), Gaps = 18/197 (9%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMM--ALEK-LADVKAVAQGGYPQAER---C 135
K I+E+A R ++DFL L E + ++E+ L V+ + GGY AER C
Sbjct: 10 KRIMELAALCYQRDIPSYTDFLN---LNEQTVFHSIERSLPPVRYLMTGGYEPAERKIVC 66
Query: 136 RLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
L +A I+ + F + +H D+LG+++ GI R +GDI++ E G
Sbjct: 67 FLPSYEEDATNLPISILKVEPVNARFA-EGLTHRDYLGALMNLGIERGMVGDIVIN-EDG 124
Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASL---RVDAL 252
+ +A+Y+ L +V SVSCT +P + E + F+ I S+ R+D +
Sbjct: 125 CFIFCLERMAEYISGELRQVRRTSVSCTAVPAFSCRVE----QKFEEIRGSIASPRLDNV 180
Query: 253 ASAGFKLSRSKLVNLIR 269
S + SR K++ I+
Sbjct: 181 LSLVYHTSRPKILPYIQ 197
>gi|422821713|ref|ZP_16869906.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK353]
gi|324990664|gb|EGC22600.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK353]
Length = 261
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 86/189 (45%), Gaps = 10/189 (5%)
Query: 85 LEMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG- 140
LE+ +R + FL P +LK + K DV+ A Y +E R+ V
Sbjct: 21 LELLQRVQDTYAFETTSFLNPHQVSILKN----IGKQYDVQVFASSDYFPSELARVLVAP 76
Query: 141 HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFL 199
L D ++ L I+ F SH +G++L GI R GDI++ GE+ AQ
Sbjct: 77 SYYQLNMDDFELSLLEISYASKFYKISHSQIMGTLLNQLGIERRTFGDILVVGER-AQLF 135
Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
V LA Y I + K+ + V + E + + + + +SLR+D L ++ FKL
Sbjct: 136 VDKRLAQYFIDHVSKIAKMPVKLKEVSFAEQLKEQKQAVTREILASSLRLDKLVASTFKL 195
Query: 260 SRSKLVNLI 268
SRS+ LI
Sbjct: 196 SRSQAAQLI 204
>gi|229075655|ref|ZP_04208637.1| RNA-binding S4 domain protein [Bacillus cereus Rock4-18]
gi|229098368|ref|ZP_04229313.1| RNA-binding S4 domain protein [Bacillus cereus Rock3-29]
gi|229104461|ref|ZP_04235128.1| RNA-binding S4 domain protein [Bacillus cereus Rock3-28]
gi|229117394|ref|ZP_04246770.1| RNA-binding S4 domain protein [Bacillus cereus Rock1-3]
gi|407706356|ref|YP_006829941.1| cytochrome c oxidase subunit II [Bacillus thuringiensis MC28]
gi|423378250|ref|ZP_17355534.1| hypothetical protein IC9_01603 [Bacillus cereus BAG1O-2]
gi|423441371|ref|ZP_17418277.1| hypothetical protein IEA_01701 [Bacillus cereus BAG4X2-1]
gi|423448403|ref|ZP_17425282.1| hypothetical protein IEC_03011 [Bacillus cereus BAG5O-1]
gi|423464445|ref|ZP_17441213.1| hypothetical protein IEK_01632 [Bacillus cereus BAG6O-1]
gi|423533787|ref|ZP_17510205.1| hypothetical protein IGI_01619 [Bacillus cereus HuB2-9]
gi|423540957|ref|ZP_17517348.1| hypothetical protein IGK_03049 [Bacillus cereus HuB4-10]
gi|423547195|ref|ZP_17523553.1| hypothetical protein IGO_03630 [Bacillus cereus HuB5-5]
gi|423623023|ref|ZP_17598801.1| hypothetical protein IK3_01621 [Bacillus cereus VD148]
gi|228666004|gb|EEL21470.1| RNA-binding S4 domain protein [Bacillus cereus Rock1-3]
gi|228678903|gb|EEL33113.1| RNA-binding S4 domain protein [Bacillus cereus Rock3-28]
gi|228684985|gb|EEL38918.1| RNA-binding S4 domain protein [Bacillus cereus Rock3-29]
gi|228707431|gb|EEL59622.1| RNA-binding S4 domain protein [Bacillus cereus Rock4-18]
gi|401128997|gb|EJQ36680.1| hypothetical protein IEC_03011 [Bacillus cereus BAG5O-1]
gi|401172145|gb|EJQ79366.1| hypothetical protein IGK_03049 [Bacillus cereus HuB4-10]
gi|401178916|gb|EJQ86089.1| hypothetical protein IGO_03630 [Bacillus cereus HuB5-5]
gi|401259796|gb|EJR65970.1| hypothetical protein IK3_01621 [Bacillus cereus VD148]
gi|401636516|gb|EJS54270.1| hypothetical protein IC9_01603 [Bacillus cereus BAG1O-2]
gi|402418032|gb|EJV50332.1| hypothetical protein IEA_01701 [Bacillus cereus BAG4X2-1]
gi|402420712|gb|EJV52983.1| hypothetical protein IEK_01632 [Bacillus cereus BAG6O-1]
gi|402464006|gb|EJV95706.1| hypothetical protein IGI_01619 [Bacillus cereus HuB2-9]
gi|407384041|gb|AFU14542.1| RNA-binding S4 domain protein [Bacillus thuringiensis MC28]
Length = 255
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 100/207 (48%), Gaps = 14/207 (6%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE +RA+ +V +DFL P + M + + DV G P AER R ++
Sbjct: 15 VDKVLEW-KRAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFDGATPYAER-RRALI 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ E AQ
Sbjct: 72 YPDYLELNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQI 130
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRI--PLLALEYEPPRTKSFKTIEASLRVDALASAG 256
+V E+ Y+ +L+ +G V VS + + + +E KS +SLR+D + +
Sbjct: 131 VVAKEIVSYIEMNLQAIGKVKVSLSAVQGEQILQTHETWGEKSGTV--SSLRLDVMLAEM 188
Query: 257 FKLSRSKLVNLIRYSSLASLVQISAKA 283
+SR K+ I+ LV+++ K
Sbjct: 189 LHISRQKVQPFIK----NGLVKVNWKT 211
>gi|206970953|ref|ZP_03231904.1| S4 domain protein [Bacillus cereus AH1134]
gi|218235237|ref|YP_002368697.1| S4 domain-containing protein [Bacillus cereus B4264]
gi|228960115|ref|ZP_04121779.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|229047582|ref|ZP_04193172.1| RNA-binding S4 domain protein [Bacillus cereus AH676]
gi|229111367|ref|ZP_04240920.1| RNA-binding S4 domain protein [Bacillus cereus Rock1-15]
gi|229129175|ref|ZP_04258148.1| RNA-binding S4 domain protein [Bacillus cereus BDRD-Cer4]
gi|229146469|ref|ZP_04274840.1| RNA-binding S4 domain protein [Bacillus cereus BDRD-ST24]
gi|229152095|ref|ZP_04280290.1| RNA-binding S4 domain protein [Bacillus cereus m1550]
gi|206733725|gb|EDZ50896.1| S4 domain protein [Bacillus cereus AH1134]
gi|218163194|gb|ACK63186.1| S4 domain protein [Bacillus cereus B4264]
gi|228631444|gb|EEK88078.1| RNA-binding S4 domain protein [Bacillus cereus m1550]
gi|228637102|gb|EEK93561.1| RNA-binding S4 domain protein [Bacillus cereus BDRD-ST24]
gi|228654412|gb|EEL10277.1| RNA-binding S4 domain protein [Bacillus cereus BDRD-Cer4]
gi|228672143|gb|EEL27434.1| RNA-binding S4 domain protein [Bacillus cereus Rock1-15]
gi|228723829|gb|EEL75184.1| RNA-binding S4 domain protein [Bacillus cereus AH676]
gi|228799631|gb|EEM46584.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
pakistani str. T13001]
Length = 241
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 95/198 (47%), Gaps = 11/198 (5%)
Query: 89 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
+RA+ +V +DFL P + M + + DV G P AER R + +P+ L +
Sbjct: 8 KRAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKRALI-YPDYLELN 65
Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 206
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 66 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQIVVAKEIVS 124
Query: 207 YLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 265
Y+ +L+ +G V VS + L+ + + T+ +SLR+D + + LSR K+
Sbjct: 125 YIEMNLQSIGKVKVSLASVQGEQILQIDETWGEKSGTV-SSLRLDVMLAEMLHLSRQKVQ 183
Query: 266 NLIRYSSLASLVQISAKA 283
I+ LV+++ K
Sbjct: 184 PFIK----NGLVKVNWKT 197
>gi|254854035|ref|ZP_05243383.1| S4 domain-containing protein [Listeria monocytogenes FSL R2-503]
gi|300765463|ref|ZP_07075444.1| hypothetical protein LMHG_12332 [Listeria monocytogenes FSL N1-017]
gi|404281642|ref|YP_006682540.1| RNA-binding S4 domain-containing protein [Listeria monocytogenes
SLCC2755]
gi|404287453|ref|YP_006694039.1| RNA-binding S4 domain-containing protein [Listeria monocytogenes
serotype 7 str. SLCC2482]
gi|258607427|gb|EEW20035.1| S4 domain-containing protein [Listeria monocytogenes FSL R2-503]
gi|300513774|gb|EFK40840.1| hypothetical protein LMHG_12332 [Listeria monocytogenes FSL N1-017]
gi|404228277|emb|CBY49682.1| RNA-binding S4 domain protein [Listeria monocytogenes SLCC2755]
gi|404246382|emb|CBY04607.1| RNA-binding S4 domain protein [Listeria monocytogenes serotype 7
str. SLCC2482]
Length = 258
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 85/186 (45%), Gaps = 8/186 (4%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 157
+DFL P + + ++ GG P AER R + +P+ T ++ D +A I
Sbjct: 35 TDFLDPRQRFITETVIGGYDEINVQFFGGVPHAERRRALI-YPDYYTPTEADFEIALFHI 93
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
F +H LG+++ G+ R+ GDI+ G + Q LV + DYL LEK+G
Sbjct: 94 RYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGTE-WQLLVESTMKDYLTLQLEKIGK 152
Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSLASLV 277
V+V L Y P + +S+R+D + S +SR K L+ A LV
Sbjct: 153 VNVMLEETDLANAVYAPVVWEEMGLTVSSMRLDVIISNAHHISRQKAKQLVT----AGLV 208
Query: 278 QISAKA 283
+++ K
Sbjct: 209 KVNWKT 214
>gi|423389793|ref|ZP_17367019.1| hypothetical protein ICG_01641 [Bacillus cereus BAG1X1-3]
gi|423418194|ref|ZP_17395283.1| hypothetical protein IE3_01666 [Bacillus cereus BAG3X2-1]
gi|401106467|gb|EJQ14428.1| hypothetical protein IE3_01666 [Bacillus cereus BAG3X2-1]
gi|401641884|gb|EJS59601.1| hypothetical protein ICG_01641 [Bacillus cereus BAG1X1-3]
Length = 255
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 10/205 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE ++A+ +V +DFL P + M + + +V G P++ER R +
Sbjct: 15 VDKVLEW-KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GEVAVRFDGAMPESERKRALI- 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ E AQ
Sbjct: 72 YPDYLELNEEEFQVEVLEIDYPSKFYTLEHRQILGAFMSLGLTREKCGDILLQ-ENRAQI 130
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
V E+A Y+ +L+ +G V VS T + + + +SLR+D L +
Sbjct: 131 AVAKEVASYIEMNLQSIGKVKVSLTPVQAEQILRVGEKWGEKSGTVSSLRLDVLLAEMLH 190
Query: 259 LSRSKLVNLIRYSSLASLVQISAKA 283
+SR K+ LI+ LV+++ K
Sbjct: 191 ISRQKVQPLIK----GGLVKVNWKT 211
>gi|423528243|ref|ZP_17504688.1| hypothetical protein IGE_01795 [Bacillus cereus HuB1-1]
gi|402451906|gb|EJV83725.1| hypothetical protein IGE_01795 [Bacillus cereus HuB1-1]
Length = 255
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 100/208 (48%), Gaps = 16/208 (7%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE +R + +V +DFL P + M + + DV G P AER R +
Sbjct: 15 VDKVLEW-KRTAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKRALI- 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ E AQ
Sbjct: 72 YPDYLELNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQI 130
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRI---PLLALEYEPPRTKSFKTIEASLRVDALASA 255
+V E+ Y+ +L+ +G V VS + + +L + +E KS +SLR+D + +
Sbjct: 131 VVAKEIVSYIEMNLQAIGKVKVSLSAVQGEQILQI-HETWGEKSGTV--SSLRLDVMLAE 187
Query: 256 GFKLSRSKLVNLIRYSSLASLVQISAKA 283
LSR K+ I+ LV+I+ K
Sbjct: 188 MLHLSRQKVQPFIK----NGLVKINWKT 211
>gi|385812132|ref|YP_005848523.1| ribosomal protein S4e [Lactobacillus fermentum CECT 5716]
gi|299783031|gb|ADJ41029.1| Ribosomal protein S4e [Lactobacillus fermentum CECT 5716]
Length = 261
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 74/169 (43%), Gaps = 4/169 (2%)
Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL--TSDPDIVAALSITG 159
FL P + + +VK +G YP AE R + +P T D + L I
Sbjct: 39 FLNPRQRYIMRVIANRQDEVKVAFKGAYPGAEMQR-GLAYPAYYQPTEDDFELQLLEINY 97
Query: 160 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 219
F H +G++L TG+ R GDII E Q +V +L+DYLI + +G
Sbjct: 98 PQKFAELHHRQVMGAVLSTGVERGAFGDIIASDEHW-QIIVQRQLSDYLIEQVTSIGKAK 156
Query: 220 VSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
V + L + T ASLR+DA+ +A F SR++ LI
Sbjct: 157 VRLEKRELQGARVPQEDWQELVTTVASLRLDAVVAASFNYSRNRAKQLI 205
>gi|423098927|ref|ZP_17086635.1| S4 domain protein [Listeria innocua ATCC 33091]
gi|370794754|gb|EHN62517.1| S4 domain protein [Listeria innocua ATCC 33091]
Length = 259
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 76/159 (47%), Gaps = 8/159 (5%)
Query: 127 GGYPQAERCRLSVGHPEALT-SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GG P AER R + +P+ T ++ D VA I F +H LG+++ G+ R+
Sbjct: 63 GGVPHAERRRALI-YPDYYTPTEADFEVALFHIRYPVKFTTLTHQKILGTLMSLGMKRDI 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
GDI+ G + Q LV + DYL LEK+G V+V L Y P +
Sbjct: 122 FGDILNNGSE-WQLLVESTMKDYLTLQLEKIGKVNVMLEETDLANAVYAPVVWEEMGLTV 180
Query: 245 ASLRVDALASAGFKLSRSKLVNLIRYSSLASLVQISAKA 283
+S+R+D + S +SR K L+ A LV+++ K
Sbjct: 181 SSMRLDVIISNAHHISRQKAKQLVT----AGLVKVNWKT 215
>gi|228954174|ref|ZP_04116202.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|229071397|ref|ZP_04204619.1| RNA-binding S4 domain protein [Bacillus cereus F65185]
gi|229081150|ref|ZP_04213660.1| RNA-binding S4 domain protein [Bacillus cereus Rock4-2]
gi|229180173|ref|ZP_04307517.1| RNA-binding S4 domain protein [Bacillus cereus 172560W]
gi|449090839|ref|YP_007423280.1| hypothetical protein HD73_4181 [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|228603382|gb|EEK60859.1| RNA-binding S4 domain protein [Bacillus cereus 172560W]
gi|228702194|gb|EEL54670.1| RNA-binding S4 domain protein [Bacillus cereus Rock4-2]
gi|228711688|gb|EEL63641.1| RNA-binding S4 domain protein [Bacillus cereus F65185]
gi|228805494|gb|EEM52085.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|449024596|gb|AGE79759.1| hypothetical protein HD73_4181 [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 241
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 96/200 (48%), Gaps = 15/200 (7%)
Query: 89 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
+RA+ +V +DFL P + M + + DV G P AER R + +P+ L +
Sbjct: 8 KRAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKRALI-YPDYLELN 65
Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 206
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 66 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQIVVAKEIVS 124
Query: 207 YLITSLEKVGNVSVSCTRI---PLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 263
Y+ +L+ +G V VS + +L + +E KS +SLR+D + + LSR K
Sbjct: 125 YIEMNLQSIGKVKVSLASVQGEQILQI-HETWGEKSGTV--SSLRLDVMLAEMLHLSRQK 181
Query: 264 LVNLIRYSSLASLVQISAKA 283
+ I+ LV+++ K
Sbjct: 182 VQPFIK----NGLVKVNWKT 197
>gi|227514818|ref|ZP_03944867.1| ribosomal protein S4e [Lactobacillus fermentum ATCC 14931]
gi|227086808|gb|EEI22120.1| ribosomal protein S4e [Lactobacillus fermentum ATCC 14931]
Length = 262
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 74/169 (43%), Gaps = 4/169 (2%)
Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL--TSDPDIVAALSITG 159
FL P + + +VK +G YP AE R + +P T D + L I
Sbjct: 40 FLNPRQRYIMRVIANRQDEVKVAFKGAYPGAEMQR-GLAYPAYYQPTEDDFELQLLEINY 98
Query: 160 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 219
F H +G++L TG+ R GDII E Q +V +L+DYLI + +G
Sbjct: 99 PQKFAELHHRQVMGAVLSTGVERGAFGDIIASDEHW-QIIVQRQLSDYLIEQVTSIGKAK 157
Query: 220 VSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
V + L + T ASLR+DA+ +A F SR++ LI
Sbjct: 158 VRLEKRELQGARVPQEDWQELVTTVASLRLDAVVAASFNYSRNRAKQLI 206
>gi|260587701|ref|ZP_05853614.1| RNA-binding S4 [Blautia hansenii DSM 20583]
gi|331084008|ref|ZP_08333115.1| hypothetical protein HMPREF0992_02039 [Lachnospiraceae bacterium
6_1_63FAA]
gi|260541966|gb|EEX22535.1| RNA-binding S4 [Blautia hansenii DSM 20583]
gi|330402370|gb|EGG81940.1| hypothetical protein HMPREF0992_02039 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 250
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 102/192 (53%), Gaps = 10/192 (5%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLAD--VKAVAQGGYPQAERCRLSV 139
K +LE+++++ R + +SDFL + +++++ +D V+ + GGY AER +++
Sbjct: 9 KRMLELSKKSYYRGILTYSDFL--DLNEQNILHSLSFSDTGVQVLLFGGYETAER-QMAA 65
Query: 140 GHPEALTSDPDI-VAALSITG-NFGFQPC-SHGDFLGSILGTGIAREKIGDIILQGEKGA 196
+A D +A + I+ N F +H D+LGSIL GI R KIGDI+++ E GA
Sbjct: 66 FVSDAFCCKEDYPIACIKISPLNRKFSDTLTHRDYLGSILNLGIERCKIGDILVE-EDGA 124
Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
+ D+LI + ++ + V RI P R + T+ AS R+D++
Sbjct: 125 FVFCHTSMVDFLIDEICRIKHTPVKAERITEENQLPTPKREEISGTV-ASPRLDSVIGLA 183
Query: 257 FKLSRSKLVNLI 268
F+ SRS +++ I
Sbjct: 184 FRTSRSSMISYI 195
>gi|229192067|ref|ZP_04319036.1| RNA-binding S4 domain protein [Bacillus cereus ATCC 10876]
gi|228591393|gb|EEK49243.1| RNA-binding S4 domain protein [Bacillus cereus ATCC 10876]
Length = 241
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 96/200 (48%), Gaps = 15/200 (7%)
Query: 89 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
+RA+ +V +DFL P + M + + DV G P AER R + +P+ L +
Sbjct: 8 KRAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKRALI-YPDYLELN 65
Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 206
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 66 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQIVVAKEIVS 124
Query: 207 YLITSLEKVGNVSVSCTRI---PLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 263
Y+ +L+ +G V VS + +L + +E KS +SLR+D + + LSR K
Sbjct: 125 YIEMNLQSIGKVKVSLASVHGEQILQI-HETWGEKSGTV--SSLRLDVMLAEMLHLSRQK 181
Query: 264 LVNLIRYSSLASLVQISAKA 283
+ I+ LV+++ K
Sbjct: 182 VQPFIK----NGLVKVNWKT 197
>gi|228922650|ref|ZP_04085950.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228837079|gb|EEM82420.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 241
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 96/200 (48%), Gaps = 15/200 (7%)
Query: 89 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
+RA+ +V +DFL P + M + + DV G P AER R + +P+ L +
Sbjct: 8 KRAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKRALI-YPDYLELN 65
Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 206
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 66 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQIVVAKEIVS 124
Query: 207 YLITSLEKVGNVSVSCTRI---PLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 263
Y+ +L+ +G V VS + +L + +E KS +SLR+D + + LSR K
Sbjct: 125 YIEMNLQSIGKVKVSLASVQGEKILQI-HETWGEKSGTV--SSLRLDVMLAEMLHLSRQK 181
Query: 264 LVNLIRYSSLASLVQISAKA 283
+ I+ LV+++ K
Sbjct: 182 VQPFIK----NGLVKVNWKT 197
>gi|206976717|ref|ZP_03237621.1| S4 domain protein [Bacillus cereus H3081.97]
gi|217961318|ref|YP_002339886.1| S4 domain-containing protein [Bacillus cereus AH187]
gi|222097343|ref|YP_002531400.1| s4 domain protein [Bacillus cereus Q1]
gi|375285823|ref|YP_005106262.1| S4 domain-containing protein [Bacillus cereus NC7401]
gi|423353601|ref|ZP_17331228.1| hypothetical protein IAU_01677 [Bacillus cereus IS075]
gi|423374305|ref|ZP_17351643.1| hypothetical protein IC5_03359 [Bacillus cereus AND1407]
gi|423567206|ref|ZP_17543453.1| hypothetical protein II7_00429 [Bacillus cereus MSX-A12]
gi|423574496|ref|ZP_17550615.1| hypothetical protein II9_01717 [Bacillus cereus MSX-D12]
gi|206745027|gb|EDZ56430.1| S4 domain protein [Bacillus cereus H3081.97]
gi|217063822|gb|ACJ78072.1| S4 domain protein [Bacillus cereus AH187]
gi|221241401|gb|ACM14111.1| S4 domain protein [Bacillus cereus Q1]
gi|358354350|dbj|BAL19522.1| S4 domain protein [Bacillus cereus NC7401]
gi|401089414|gb|EJP97585.1| hypothetical protein IAU_01677 [Bacillus cereus IS075]
gi|401094217|gb|EJQ02299.1| hypothetical protein IC5_03359 [Bacillus cereus AND1407]
gi|401212021|gb|EJR18767.1| hypothetical protein II9_01717 [Bacillus cereus MSX-D12]
gi|401214294|gb|EJR21024.1| hypothetical protein II7_00429 [Bacillus cereus MSX-A12]
Length = 255
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 101/208 (48%), Gaps = 16/208 (7%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE +RA+ +V +DFL P + M + + DV G QAER R +
Sbjct: 15 VDKVLEW-KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVAVQFDGATSQAERKRALI- 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ E AQ
Sbjct: 72 YPDYLVINEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQI 130
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLA---LEYEPPRTKSFKTIEASLRVDALASA 255
+V E+ Y+ +L+ +G V VS + P+ L+ + + T+ +SLR+D + +
Sbjct: 131 VVAKEVVSYIEMNLQSIGKVKVSLS--PVQGEKILQIQETWGEKSGTV-SSLRLDVMLAE 187
Query: 256 GFKLSRSKLVNLIRYSSLASLVQISAKA 283
+SR K+ I+ LV+++ K
Sbjct: 188 MLHISRQKVQPFIK----NGLVKVNWKT 211
>gi|315639612|ref|ZP_07894752.1| S4 domain-containing protein YlmH [Enterococcus italicus DSM 15952]
gi|315484573|gb|EFU75029.1| S4 domain-containing protein YlmH [Enterococcus italicus DSM 15952]
Length = 260
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 87/177 (49%), Gaps = 16/177 (9%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT---SDPDIVAALS 156
++FL P + + +D+K GGY QAER R + P+ T + DIV
Sbjct: 36 TEFLDPRQAYILETIVRQQSDLKFEFYGGYEQAERTRCLI-FPDYYTPTQEEFDIVL-FE 93
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
I F SHG LG+++ +G+ RE GDII G + Q LV E+ +Y+ + K+G
Sbjct: 94 INYPEKFTQLSHGKILGTLVNSGLKREYFGDIISDGSRW-QVLVAKEVQNYIQMQVTKIG 152
Query: 217 NVSVSCTRIPLLALEY---EPPRTKSFK--TIEASLRVDALASAGFKLSRSKLVNLI 268
+V+V LL EY P+ + T +S+R+D + + F +SR + LI
Sbjct: 153 SVNVR-----LLVKEYIDLVSPKDAWLEEATTVSSMRLDTVIANVFSISRQRSKQLI 204
>gi|423604475|ref|ZP_17580368.1| hypothetical protein IIK_01056 [Bacillus cereus VD102]
gi|401245095|gb|EJR51453.1| hypothetical protein IIK_01056 [Bacillus cereus VD102]
Length = 255
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 101/207 (48%), Gaps = 16/207 (7%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE +RA+ +V +DFL P + M + + DV G QAER R +
Sbjct: 15 VDKVLEW-KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVAVQFDGATSQAERKRALI- 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ E AQ
Sbjct: 72 YPDYLVINEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQI 130
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLA---LEYEPPRTKSFKTIEASLRVDALASA 255
+V E+ Y+ +L+ +G V VS + P+ L+ + + T+ +SLR+D + +
Sbjct: 131 VVAKEVVSYIEMNLQSIGKVKVSLS--PVQGEKILQIQETWGEKSGTV-SSLRLDVMLAE 187
Query: 256 GFKLSRSKLVNLIRYSSLASLVQISAK 282
+SR K+ I+ LV+++ K
Sbjct: 188 MLHISRQKVQPFIK----NGLVKVNWK 210
>gi|16801200|ref|NP_471468.1| hypothetical protein lin2134 [Listeria innocua Clip11262]
gi|16414648|emb|CAC97364.1| lin2134 [Listeria innocua Clip11262]
Length = 258
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 76/159 (47%), Gaps = 8/159 (5%)
Query: 127 GGYPQAERCRLSVGHPEALT-SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GG P AER R + +P+ T ++ D VA I F +H LG+++ G+ R+
Sbjct: 62 GGVPHAERRRALI-YPDYYTPTEADFEVALFHIRYPVKFTTLTHQKILGTLMSLGMKRDI 120
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
GDI+ G + Q LV + DYL LEK+G V+V L Y P +
Sbjct: 121 FGDILNNGSE-WQLLVESTMKDYLTLQLEKIGKVNVMLEETDLANAVYAPVVWEEMGLTV 179
Query: 245 ASLRVDALASAGFKLSRSKLVNLIRYSSLASLVQISAKA 283
+S+R+D + S +SR K L+ A LV+++ K
Sbjct: 180 SSMRLDVIISNAHHISRQKAKQLV----TAGLVKVNWKT 214
>gi|443632790|ref|ZP_21116969.1| S4 domain-containing protein [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
gi|443347613|gb|ELS61671.1| S4 domain-containing protein [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
Length = 257
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 89/175 (50%), Gaps = 11/175 (6%)
Query: 100 SDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSVGHPEAL---TSDPDIVAA 154
+DFL P +E ++ A+ ADV GGY +AER R ++ +PE + SD ++ A
Sbjct: 35 TDFLDP---REQVILSAVTGQADVGLAFSGGYGRAERKR-AILYPEYIIPEESDFEL-QA 89
Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 214
++ F H LG+++G G+ R+K GDI+ E Q +V + AD++ L +
Sbjct: 90 FNVRYAEKFVTVDHRSLLGALMGIGLRRQKFGDIVF-SETSVQLIVSADTADFVAAQLTQ 148
Query: 215 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIR 269
G +VS +I L L + +SLR+DA+ ++ + SR K L++
Sbjct: 149 AGKAAVSLEKIDLSDLNIPAIDVEIRDDTVSSLRLDAVCASMSRQSRQKSQTLVK 203
>gi|184155056|ref|YP_001843396.1| hypothetical protein LAF_0580 [Lactobacillus fermentum IFO 3956]
gi|183226400|dbj|BAG26916.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956]
Length = 262
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 74/169 (43%), Gaps = 4/169 (2%)
Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL--TSDPDIVAALSITG 159
FL P + + +VK +G YP AE R + +P T D + L I
Sbjct: 40 FLNPRQRYIMRVIANRQDEVKVAFKGAYPGAEMQR-GLAYPAYYQPTEDDFELQLLEINY 98
Query: 160 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 219
F H +G++L TG+ R GDII E Q +V +L+DYLI + +G
Sbjct: 99 PQKFAELHHRQVMGAVLSTGVERGAFGDIIASDEHW-QIIVQRQLSDYLIEQVTSIGKAK 157
Query: 220 VSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
V + L + T ASLR+DA+ +A F SR++ LI
Sbjct: 158 VRLEKRELQGARAPQEDWQELVTTVASLRLDAVVAASFNYSRNRAKQLI 206
>gi|423612112|ref|ZP_17587973.1| hypothetical protein IIM_02827 [Bacillus cereus VD107]
gi|401247119|gb|EJR53463.1| hypothetical protein IIM_02827 [Bacillus cereus VD107]
Length = 255
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 10/205 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE ++A+ +V +DFL P + M + + DV G P+AER R ++
Sbjct: 15 VDKVLEW-KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVRFDGAMPEAERKR-ALI 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ E AQ
Sbjct: 72 YPDYLELNEEEFQVEVLEIDYPSKFYTLEHRQILGAFMSLGLTREKCGDILLQ-EDRAQI 130
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
V E+ Y+ +L+ +G V V+ + I + + + +SLR+D L +
Sbjct: 131 AVAKEVVSYIEMNLQSIGKVKVTLSPIQVEQILQVSEKWGEKSGTVSSLRLDVLLAEMLH 190
Query: 259 LSRSKLVNLIRYSSLASLVQISAKA 283
+SR K LI+ LV+++ K
Sbjct: 191 ISRQKAQPLIK----NGLVKVNWKT 211
>gi|75763514|ref|ZP_00743226.1| RNA binding protein [Bacillus thuringiensis serovar israelensis
ATCC 35646]
gi|74488996|gb|EAO52500.1| RNA binding protein [Bacillus thuringiensis serovar israelensis
ATCC 35646]
Length = 255
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 100/207 (48%), Gaps = 16/207 (7%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE +R + +V +DFL P + M + + DV G P AER R +
Sbjct: 15 VDKVLEW-KRTAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKRALI- 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ E AQ
Sbjct: 72 YPDYLELNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSXGLTREKCGDILLQ-ENRAQI 130
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRI---PLLALEYEPPRTKSFKTIEASLRVDALASA 255
+V E+ Y+ +L+ +G V VS + + +L + +E KS +SLR+D + +
Sbjct: 131 VVAKEIVSYIEMNLQAIGKVKVSLSAVQGEQILQI-HETWGEKSGTV--SSLRLDVMLAE 187
Query: 256 GFKLSRSKLVNLIRYSSLASLVQISAK 282
LSR K+ I+ LV+++ K
Sbjct: 188 MLHLSRQKVQPFIK----NGLVKVNWK 210
>gi|227544869|ref|ZP_03974918.1| ribosomal protein S4e [Lactobacillus reuteri CF48-3A]
gi|338204193|ref|YP_004650338.1| S4 domain-containing protein YlmH [Lactobacillus reuteri SD2112]
gi|227185143|gb|EEI65214.1| ribosomal protein S4e [Lactobacillus reuteri CF48-3A]
gi|336449433|gb|AEI58048.1| S4 domain-containing protein YlmH [Lactobacillus reuteri SD2112]
Length = 261
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 84/188 (44%), Gaps = 3/188 (1%)
Query: 87 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 146
+A S R VL + FL P + + +VK GG+ AE R+ + P
Sbjct: 25 VATAESQYRPVL-TPFLNPRERFIIQTIVNRNNNVKITMYGGWQGAEMQRVLIYPPYYEP 83
Query: 147 SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELA 205
S D + AL I F H +G+++G G+ R GDI+ G Q +V +A
Sbjct: 84 SIEDFALQALEINYPVKFSELHHRQIMGTLIGEGMERNAFGDILTDGAHW-QVIVTKPMA 142
Query: 206 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 265
+YL ++E VG + V I A+ T +SLR+D + +AGF SR++
Sbjct: 143 EYLRKNVEHVGQIKVKWIPIATEAVVTPKEEWVPIVTTVSSLRLDVVIAAGFNYSRNRAK 202
Query: 266 NLIRYSSL 273
LI + +
Sbjct: 203 QLIEHGQV 210
>gi|354807874|ref|ZP_09041326.1| S4 domain protein [Lactobacillus curvatus CRL 705]
gi|354513624|gb|EHE85619.1| S4 domain protein [Lactobacillus curvatus CRL 705]
Length = 262
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 91/205 (44%), Gaps = 8/205 (3%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +L+ +A + + FL P + + DV+ GGY AER R +
Sbjct: 19 VAQVLDWIEQAQVEYRPILTAFLDPRQAFILQTLVGEKGDVRYHFNGGYNAAERKRAMIA 78
Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFL 199
+D D + I F SHG LG+++ GI R+ GDI+ E+ QF
Sbjct: 79 PDYFEPTDADFEIQLFEIRYPIKFANLSHGKVLGTLVNAGIDRDVFGDIMTDEERW-QFF 137
Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSF-KTIEASLRVDALASAGFK 258
V ++A Y+ + K+G VSV L P F +T +S R+D + S +
Sbjct: 138 VTKKMAGYVEEQITKIGRVSVHLQEQDYTQL-LTPKDAWQFEQTTVSSFRLDTIISTVYN 196
Query: 259 LSRSKLVNLIRYSSLASLVQISAKA 283
LSR + LI+ A+ V+++ +A
Sbjct: 197 LSRQRAKELIQ----ANKVKLNWQA 217
>gi|229086462|ref|ZP_04218634.1| RNA-binding S4 domain protein [Bacillus cereus Rock3-44]
gi|228696779|gb|EEL49592.1| RNA-binding S4 domain protein [Bacillus cereus Rock3-44]
Length = 257
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 97/208 (46%), Gaps = 14/208 (6%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V LE + A +V +DFL P + + D G P+AER R ++
Sbjct: 15 VDKALEWKQMAEEYHQVKLTDFLDPRQQQIVATIIGNQGDAILKFYGVAPKAERKR-ALI 73
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P L + + + L I F H LGS + G+ REK GDI+LQ E AQ
Sbjct: 74 YPNYLDLNEEEFQIEVLEIDYPSKFYSLEHRQILGSFMSLGLTREKCGDILLQ-ENRAQI 132
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIP---LLALEYEPPRTKSFKTIEASLRVDALASA 255
+V E+A Y+ +L+ +G + VS + + +L L+ E K +SLR+D + +
Sbjct: 133 VVAKEVASYIEMNLQSIGKMKVSLSSVQADRILRLQEE---WKEQSGTVSSLRLDVVIAE 189
Query: 256 GFKLSRSKLVNLIRYSSLASLVQISAKA 283
LSR K+ LI+ LV+++ K
Sbjct: 190 MLHLSRQKVQPLIK----NGLVKVNWKT 213
>gi|194468386|ref|ZP_03074372.1| RNA-binding S4 domain protein [Lactobacillus reuteri 100-23]
gi|194453239|gb|EDX42137.1| RNA-binding S4 domain protein [Lactobacillus reuteri 100-23]
Length = 261
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 2/155 (1%)
Query: 120 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT 178
+VK GG+ AE R+ + P S D + AL I F H +G+++G
Sbjct: 57 NVKITMYGGWQGAEMQRVLIYPPYYEPSIEDFALQALEINYPVKFSELHHRQIMGTLIGE 116
Query: 179 GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK 238
G+ R GDI+ G Q +V +A+YL ++E VG + V I A+
Sbjct: 117 GMERNAFGDILTDGAHW-QVIVTKPMAEYLRKNVEHVGRIKVKWIPIATEAVVTPKEEWV 175
Query: 239 SFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSL 273
T +SLR+D + +AGF SR++ LI + +
Sbjct: 176 PIVTTVSSLRLDVVVAAGFNYSRNRAKQLIEHGQV 210
>gi|336424183|ref|ZP_08604226.1| hypothetical protein HMPREF0994_00232 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336007851|gb|EGN37871.1| hypothetical protein HMPREF0994_00232 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 256
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 93/204 (45%), Gaps = 15/204 (7%)
Query: 74 DKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAE 133
DK+ ++ K LE+A ++ ++ + FL+ + A++K GG E
Sbjct: 6 DKDLLQLKKRFLELAEKSYAQNIYTFTGFLSMAEQEALFEAMQKNKSYTFSLSGGGEGCE 65
Query: 134 RCRLSVGHPEAL-TSDPDIVAALSIT-------GNFGFQPCSHGDFLGSILGTGIAREKI 185
R G PE L +P V L I+ NF +H DFLG+++ GI R +
Sbjct: 66 RQMARFGSPEELGYEEPFPVEVLKISPLLEKFADNF-----THRDFLGAVMNLGIDRSTV 120
Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
GD L+G K A +A Y+ +L KV + +V C I +E + I +
Sbjct: 121 GDFFLEG-KSAWLYCTQRIAPYICENLNKVRHTNVRC-EIVEQGMELPVREPEKISLIVS 178
Query: 246 SLRVDALASAGFKLSRSKLVNLIR 269
S R DA+ + ++LSR++ + L R
Sbjct: 179 SERADAVLAKLWQLSRNQSLELFR 202
>gi|323486919|ref|ZP_08092235.1| hypothetical protein HMPREF9474_03986 [Clostridium symbiosum
WAL-14163]
gi|323399782|gb|EGA92164.1| hypothetical protein HMPREF9474_03986 [Clostridium symbiosum
WAL-14163]
Length = 251
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 92/201 (45%), Gaps = 13/201 (6%)
Query: 74 DKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMM---ALEKLADVKAVAQGGYP 130
DK+ K I E+A R ++DFLT L E + L V + GGY
Sbjct: 3 DKDEQLLKKRISELAALCYQRDIRSYTDFLT---LNEQTIFHSMKRTLPPVTWLMGGGYE 59
Query: 131 QAER---CRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGD 187
AER C L E I+ A+ + F + +H DFLG+I+ GI+R IGD
Sbjct: 60 TAERKIVCFLPSYEDETADLSISILEAVPASPRFA-EALTHRDFLGAIMNLGISRSCIGD 118
Query: 188 IILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASL 247
I++ E G + ++A +LI L+ V + VSC P P ++ AS
Sbjct: 119 ILMN-ENGCFIFCLEKMAPFLIQELKMVRHTQVSCR--PATQALAAAPNCETVSGSVASP 175
Query: 248 RVDALASAGFKLSRSKLVNLI 268
R+D++ S FK SRSK + I
Sbjct: 176 RLDSVISLVFKTSRSKTLPFI 196
>gi|228902403|ref|ZP_04066557.1| RNA-binding S4 domain protein [Bacillus thuringiensis IBL 4222]
gi|228966851|ref|ZP_04127895.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar sotto
str. T04001]
gi|402564759|ref|YP_006607483.1| S4 domain-containing protein [Bacillus thuringiensis HD-771]
gi|423359066|ref|ZP_17336569.1| hypothetical protein IC1_01046 [Bacillus cereus VD022]
gi|423561697|ref|ZP_17537973.1| hypothetical protein II5_01101 [Bacillus cereus MSX-A1]
gi|434377001|ref|YP_006611645.1| S4 domain-containing protein [Bacillus thuringiensis HD-789]
gi|228792950|gb|EEM40508.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228857147|gb|EEN01653.1| RNA-binding S4 domain protein [Bacillus thuringiensis IBL 4222]
gi|401084938|gb|EJP93184.1| hypothetical protein IC1_01046 [Bacillus cereus VD022]
gi|401201954|gb|EJR08819.1| hypothetical protein II5_01101 [Bacillus cereus MSX-A1]
gi|401793411|gb|AFQ19450.1| S4 domain-containing protein [Bacillus thuringiensis HD-771]
gi|401875558|gb|AFQ27725.1| S4 domain-containing protein [Bacillus thuringiensis HD-789]
Length = 255
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 100/207 (48%), Gaps = 16/207 (7%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE +R + +V +DFL P + M + + DV G P AER R +
Sbjct: 15 VDKVLEW-KRTAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKRALI- 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ E AQ
Sbjct: 72 YPDYLELNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQI 130
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRI---PLLALEYEPPRTKSFKTIEASLRVDALASA 255
+V E+ Y+ +L+ +G V VS + + +L + +E KS +SLR+D + +
Sbjct: 131 VVAKEIVSYIEMNLQAIGKVKVSLSAVQGEQILQI-HETWGEKSGTV--SSLRLDVMLAE 187
Query: 256 GFKLSRSKLVNLIRYSSLASLVQISAK 282
LSR K+ I+ LV+++ K
Sbjct: 188 MLHLSRQKVQPFIK----NGLVKVNWK 210
>gi|317495383|ref|ZP_07953752.1| S4 domain-containing protein [Gemella morbillorum M424]
gi|316914442|gb|EFV35919.1| S4 domain-containing protein [Gemella morbillorum M424]
Length = 256
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 80/166 (48%), Gaps = 8/166 (4%)
Query: 102 FLT---PPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSIT 158
FLT +LK+ +M +D+ GG AER + + E D +I L
Sbjct: 37 FLTNFEQVILKKIIMY--NYSDMSIDFFGGTADAERKKAKIIANEYYDIDYEI-TCLRAN 93
Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 218
N F H D LG++ GI +IGDI++ E+ V E+ADY++ L K+G +
Sbjct: 94 YNNKFDKIQHRDVLGAVHNMGINFNRIGDIVVL-EREIYIFVDYEIADYIMMQLTKIGRI 152
Query: 219 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKL 264
++ +I L+ + E + F + +S R+D+L + SRSK+
Sbjct: 153 NLQFEKIDLVEVNIEKE-YEEFDIVSSSFRLDSLVAKITNKSRSKV 197
>gi|431185990|ref|ZP_19500053.1| S4 domain-containing protein [Enterococcus faecium E1620]
gi|430572975|gb|ELB11810.1| S4 domain-containing protein [Enterococcus faecium E1620]
Length = 260
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 93/178 (52%), Gaps = 18/178 (10%)
Query: 100 SDFLTPPVLKESMMALEKL----ADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVA 153
++FL P ++S + LE L +D++ + GGY QAER C + + E + D + A
Sbjct: 36 TEFLDP---RQSYI-LETLIRQSSDLRFMFYGGYEQAERKRCLIFPDYYEPVKEDFE-TA 90
Query: 154 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
I F SHG LG+++GTGI R GDII G++ Q + E+ ++ T +
Sbjct: 91 LYEIHYPSKFASLSHGKILGTLVGTGIKRSYFGDIISDGDR-WQVFIANEVDHFVATQVT 149
Query: 214 KVGNVSVSCTRIPLLALEYEPPR---TKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+G V+V P+ E P+ T+ T+ +S+R+D++ S + +SR + LI
Sbjct: 150 KIGKVAVRLE--PIKYTEMIMPKDSWTQERGTV-SSMRLDSVISEIYNISRQRSKQLI 204
>gi|423385399|ref|ZP_17362655.1| hypothetical protein ICE_03145 [Bacillus cereus BAG1X1-2]
gi|401635455|gb|EJS53210.1| hypothetical protein ICE_03145 [Bacillus cereus BAG1X1-2]
Length = 255
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 100/208 (48%), Gaps = 16/208 (7%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE +R + +V +DFL P + M + + DV G P AER R +
Sbjct: 15 VDKVLEW-KRTAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKRALI- 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ E AQ
Sbjct: 72 YPDYLELNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQI 130
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRI---PLLALEYEPPRTKSFKTIEASLRVDALASA 255
+V E+ Y+ +L+ +G V VS + + +L + +E KS +SLR+D + +
Sbjct: 131 VVAKEIVSYIEMNLQAIGKVKVSLSAVQGEQILQI-HETWGEKSGTV--SSLRLDVMLAE 187
Query: 256 GFKLSRSKLVNLIRYSSLASLVQISAKA 283
LSR K+ I+ LV+++ K
Sbjct: 188 MLHLSRQKVQPFIK----NGLVKVNWKT 211
>gi|389573338|ref|ZP_10163413.1| hypothetical protein BAME_19820 [Bacillus sp. M 2-6]
gi|388427035|gb|EIL84845.1| hypothetical protein BAME_19820 [Bacillus sp. M 2-6]
Length = 258
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 97/206 (47%), Gaps = 8/206 (3%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +L A + + +DFL P + ++ ++ + GGY +AER R +
Sbjct: 16 VDQVLGWKNIALDQYRMKLTDFLDPREQFITQSVIQHSDELGLMFFGGYEEAERKRALI- 74
Query: 141 HPEALTSDPDIVAALSITGNFG--FQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P+ L N+ F H + LGS++GTG+ R+K GD++ E QF
Sbjct: 75 YPDYLAPSIQDFELTYFQVNYAKKFISIEHPNLLGSLIGTGLKRQKFGDLLF-SEDNVQF 133
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
+ ++AD++ L VG SVS I ++ +T + +SLR+DA+ +A +
Sbjct: 134 ICTSDVADFVRAQLTHVGRASVSLEEISKADIQPVISKTDIKEDTISSLRLDAVCAAVSR 193
Query: 259 LSRSKLVNLIRYSSLASLVQISAKAS 284
SR K L++ LV+++ K +
Sbjct: 194 QSRQKAQLLVK----NGLVKVNWKVT 215
>gi|323352734|ref|ZP_08087704.1| S4 domain-containing protein YlmH [Streptococcus sanguinis VMC66]
gi|322121770|gb|EFX93516.1| S4 domain-containing protein YlmH [Streptococcus sanguinis VMC66]
Length = 260
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 87/189 (46%), Gaps = 10/189 (5%)
Query: 85 LEMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG- 140
LE+ +R + FL P +LK + K DV+ A + +E R+ V
Sbjct: 20 LELLQRVQDTYAFETTSFLNPHQVSILKN----IGKQYDVQVFASTDFFPSELARVLVAP 75
Query: 141 HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFL 199
L D ++ L I+ F SH +G++L GI R GDI++ GE+ AQ
Sbjct: 76 SYYQLNMDDFELSLLEISYASKFYKISHSQIMGTLLNQLGIERRTFGDILVVGER-AQLF 134
Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
V LA Y I + K+ + V + E ++ + + + +SLR+D L ++ FKL
Sbjct: 135 VDKRLAQYFIDHVSKIAKMPVKLKEVSFAEQLKEQKQSATREILASSLRLDKLVASTFKL 194
Query: 260 SRSKLVNLI 268
SRS+ LI
Sbjct: 195 SRSQAAQLI 203
>gi|336392791|ref|ZP_08574190.1| hypothetical protein LcortK3_08586 [Lactobacillus coryniformis
subsp. torquens KCTC 3535]
Length = 207
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 71/145 (48%), Gaps = 6/145 (4%)
Query: 127 GGYPQAERCRLSVGHPEAL--TSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGY AER R + +PE T + + I F SHG LG+++ GI RE
Sbjct: 63 GGYLAAERKRALI-YPEYFVPTQEDFDIQLFEIHYPTKFATLSHGKVLGTLVNAGIKREV 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFK-TI 243
GDI+ G++ QF V +ADY+ T + ++G + V L P S + T
Sbjct: 122 FGDIMTDGDRW-QFFVTASMADYIQTQITQIGRIGVRLEPKDYTEL-LVPKDAWSLEHTT 179
Query: 244 EASLRVDALASAGFKLSRSKLVNLI 268
+SLR+D L SA + +SR + L+
Sbjct: 180 ASSLRIDGLISAVYNISRQRSKELV 204
>gi|218899051|ref|YP_002447462.1| S4 domain-containing protein [Bacillus cereus G9842]
gi|218545304|gb|ACK97698.1| S4 domain protein [Bacillus cereus G9842]
Length = 255
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 100/207 (48%), Gaps = 16/207 (7%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE +R + +V +DFL P + M + + DV G P AER R +
Sbjct: 15 VDKVLEW-KRTAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKRALI- 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ E AQ
Sbjct: 72 YPDYLKLNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQI 130
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRI---PLLALEYEPPRTKSFKTIEASLRVDALASA 255
+V E+ Y+ +L+ +G V VS + + +L + +E KS +SLR+D + +
Sbjct: 131 VVAKEIVSYIEMNLQAIGKVKVSLSAVQGEQILQI-HETWGEKSGTV--SSLRLDVMLAE 187
Query: 256 GFKLSRSKLVNLIRYSSLASLVQISAK 282
LSR K+ I+ LV+++ K
Sbjct: 188 MLHLSRQKVQPFIK----NGLVKVNWK 210
>gi|187934764|ref|YP_001886623.1| S4 domain-containing protein [Clostridium botulinum B str. Eklund
17B]
gi|187722917|gb|ACD24138.1| S4 domain protein [Clostridium botulinum B str. Eklund 17B]
Length = 254
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 100/211 (47%), Gaps = 19/211 (9%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
K+IL + + S V + F +P + K E + K +G + ER +S +
Sbjct: 23 KYILAVDKDIS----VFGNYFYSPKIWKWFKENCE-TSKFKVTCEGIFKNCERKMISFNN 77
Query: 142 PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVV 201
+ P + L + G F H DFLG IL GI R KIGD+I+ E +L +
Sbjct: 78 ---IYDSPFPIKLLKVEGKSKFSNLEHKDFLGGILSLGIERNKIGDLIV--EDNVCYLPI 132
Query: 202 PE-LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFK---TIEASLRVDALASAGF 257
E +A +L+++++K+G S T I E + P K FK + +SLR+D + S
Sbjct: 133 HEDIAKFLLSNVDKIGKTPCSITEI---QNEGDFPEIK-FKEDIILISSLRIDGIVSKIS 188
Query: 258 KLSRSKLVNLIRYSS-LASLVQISAKASAIR 287
KLSR+K LI L +++ K+ ++
Sbjct: 189 KLSRAKAQMLIDQGQVLIDYIKVKDKSYEVK 219
>gi|148543830|ref|YP_001271200.1| RNA-binding S4 domain-containing protein [Lactobacillus reuteri DSM
20016]
gi|184153231|ref|YP_001841572.1| hypothetical protein LAR_0576 [Lactobacillus reuteri JCM 1112]
gi|227364734|ref|ZP_03848783.1| ribosomal protein S4e [Lactobacillus reuteri MM2-3]
gi|325682639|ref|ZP_08162156.1| S4 domain protein [Lactobacillus reuteri MM4-1A]
gi|148530864|gb|ABQ82863.1| RNA-binding S4 domain protein [Lactobacillus reuteri DSM 20016]
gi|183224575|dbj|BAG25092.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
gi|227070193|gb|EEI08567.1| ribosomal protein S4e [Lactobacillus reuteri MM2-3]
gi|324978478|gb|EGC15428.1| S4 domain protein [Lactobacillus reuteri MM4-1A]
Length = 261
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 2/155 (1%)
Query: 120 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT 178
+VK GG+ AE R+ + P S D + AL I F H +G+++G
Sbjct: 57 NVKITMYGGWQGAEMQRVLIYPPYYEPSIEDFALQALEINYPVKFSELHHRQIMGTLIGE 116
Query: 179 GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK 238
G+ R GDI+ G Q +V +A+YL ++E VG + V I A+
Sbjct: 117 GMERNAFGDILTDGSHW-QVIVTKPMAEYLRKNVEHVGRIKVKWIPIATEAVVTPKEEWV 175
Query: 239 SFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSL 273
T +SLR+D + +AGF SR++ LI + +
Sbjct: 176 PIVTTVSSLRLDVVIAAGFNYSRNRAKQLIEHGQV 210
>gi|241889477|ref|ZP_04776776.1| putative S4 domain-containing protein [Gemella haemolysans ATCC
10379]
gi|241863784|gb|EER68167.1| putative S4 domain-containing protein [Gemella haemolysans ATCC
10379]
Length = 256
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 3/154 (1%)
Query: 111 SMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGD 170
S + +D K GG+ AER + + E D DIV L N F H +
Sbjct: 47 SQIVAYNYSDFKVEFFGGFDDAERKKAKIISNEYYDVDYDIVC-LKAKFNNKFNRVEHRN 105
Query: 171 FLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLAL 230
LG++ GI + GDII+ E V E+ADY+ K G V++ R+ L +
Sbjct: 106 ILGAVHNLGINFNRFGDIIV-IENEVYIFVDEEIADYIAMEFTKAGRVNLDFQRVDLAEV 164
Query: 231 EYEPPRTKSFKTIEASLRVDALASAGFKLSRSKL 264
E + + F+ + +S R+D++ + SRSK+
Sbjct: 165 GIE-KKYEDFEIVSSSFRIDSIVAKITNKSRSKV 197
>gi|423437350|ref|ZP_17414331.1| hypothetical protein IE9_03531 [Bacillus cereus BAG4X12-1]
gi|401120505|gb|EJQ28301.1| hypothetical protein IE9_03531 [Bacillus cereus BAG4X12-1]
Length = 255
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 99/208 (47%), Gaps = 16/208 (7%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE +R + +V +DFL P + M + + DV G P AER R +
Sbjct: 15 VDKVLEW-KRVAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKRALI- 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ E AQ
Sbjct: 72 YPDYLELNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQI 130
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRI---PLLALEYEPPRTKSFKTIEASLRVDALASA 255
+V E+ Y+ +L+ +G V VS + +L + +E KS +SLR+D + +
Sbjct: 131 VVAKEIVSYIEMNLQSIGKVKVSLASVQGEQILQI-HETWGEKSGTV--SSLRLDVMLAE 187
Query: 256 GFKLSRSKLVNLIRYSSLASLVQISAKA 283
LSR K+ I+ LV+++ K
Sbjct: 188 MLHLSRQKVQPFIK----NGLVKVNWKT 211
>gi|311029944|ref|ZP_07708034.1| RNA binding protein [Bacillus sp. m3-13]
Length = 258
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 83/171 (48%), Gaps = 4/171 (2%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL--TSDPDIVAALSI 157
+DFL P + + DVK GG AER R ++ +P L T++ + A +
Sbjct: 35 TDFLDPREQEIVKSVVGNNEDVKLAFHGGANGAERKR-ALLYPPYLEPTAEDFGLKAYDL 93
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
+ F H LGS++G G+ R K GDI + Q ++ E++ ++ L++VG
Sbjct: 94 SYPEKFVKIEHRQVLGSLMGIGLKRSKFGDIYFH-DSSIQIVLSAEVSAFVEMQLQEVGK 152
Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
V VS +PL LE + T ASLR+D + ++ + LSR K LI
Sbjct: 153 VKVSLNELPLENLESTETSWEEASTTAASLRLDVMIASIYNLSRQKAQLLI 203
>gi|261206526|ref|ZP_05921226.1| RNA binding protein S4 [Enterococcus faecium TC 6]
gi|289565436|ref|ZP_06445885.1| RNA-binding S4 domain-containing protein [Enterococcus faecium
D344SRF]
gi|294614703|ref|ZP_06694605.1| S4 domain protein [Enterococcus faecium E1636]
gi|294618999|ref|ZP_06698494.1| S4 domain protein [Enterococcus faecium E1679]
gi|430851041|ref|ZP_19468797.1| S4 domain-containing protein [Enterococcus faecium E1185]
gi|431677802|ref|ZP_19524400.1| S4 domain-containing protein [Enterococcus faecium E1904]
gi|260079236|gb|EEW66927.1| RNA binding protein S4 [Enterococcus faecium TC 6]
gi|289162765|gb|EFD10616.1| RNA-binding S4 domain-containing protein [Enterococcus faecium
D344SRF]
gi|291592441|gb|EFF24048.1| S4 domain protein [Enterococcus faecium E1636]
gi|291594660|gb|EFF26042.1| S4 domain protein [Enterococcus faecium E1679]
gi|430534798|gb|ELA75233.1| S4 domain-containing protein [Enterococcus faecium E1185]
gi|430599295|gb|ELB37006.1| S4 domain-containing protein [Enterococcus faecium E1904]
Length = 260
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 93/178 (52%), Gaps = 18/178 (10%)
Query: 100 SDFLTPPVLKESMMALEKL----ADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVA 153
++FL P ++S + LE L +D++ + GGY QAER C + + E + D + A
Sbjct: 36 TEFLDP---RQSYI-LETLIRQSSDLRFMFYGGYEQAERKRCLIFPDYYEPVEEDFE-TA 90
Query: 154 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
I F SHG LG+++GTGI R GDII G++ Q + E+ ++ T +
Sbjct: 91 LYEIHYPSKFASLSHGKILGTLVGTGIKRSYFGDIISDGDR-WQVFIANEVDHFVATQVT 149
Query: 214 KVGNVSVSCTRIPLLALEYEPPR---TKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+G V+V P+ E P+ T+ T+ +S+R+D++ S + +SR + LI
Sbjct: 150 KIGKVAVRLE--PIKYTEMIMPKDSWTQERGTV-SSMRLDSVISEIYNISRQRSKQLI 204
>gi|125717514|ref|YP_001034647.1| hypothetical protein SSA_0659 [Streptococcus sanguinis SK36]
gi|422853762|ref|ZP_16900426.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK160]
gi|422856015|ref|ZP_16902673.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK1]
gi|422865984|ref|ZP_16912609.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK1058]
gi|125497431|gb|ABN44097.1| Conserved hypothetical protein [Streptococcus sanguinis SK36]
gi|325697073|gb|EGD38960.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK160]
gi|327461676|gb|EGF08007.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK1]
gi|327489529|gb|EGF21322.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK1058]
Length = 261
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 89/195 (45%), Gaps = 10/195 (5%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERC 135
E + LE+ +R + FL P +LK + K DV+ A Y +E
Sbjct: 15 EFIDRSLELLQRVQDTYAFETTPFLNPHQVSILKN----IGKQYDVQVFASSDYFPSELA 70
Query: 136 RLSVG-HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGE 193
R+ V L D ++ L I+ F SH +G++L GI R GDI++ G+
Sbjct: 71 RVLVAPSYYQLNMDDFELSLLEISYASKFYKISHSQIMGTLLNHLGIERRTFGDILVVGD 130
Query: 194 KGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALA 253
+ AQ V LA Y I + K+ + V + L E + + + + +SLR+D L
Sbjct: 131 R-AQLFVDKRLAQYFIDHVSKIAKMPVKLKEVSFAELLKEQKQAVTREILASSLRLDKLV 189
Query: 254 SAGFKLSRSKLVNLI 268
++ FKLSR++ LI
Sbjct: 190 ASTFKLSRNQAAQLI 204
>gi|56419669|ref|YP_146987.1| hypothetical protein GK1134 [Geobacillus kaustophilus HTA426]
gi|56379511|dbj|BAD75419.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
Length = 257
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 94/204 (46%), Gaps = 8/204 (3%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ +LE S + +DFL P + DV+A GG P ER R+ +
Sbjct: 15 IDQVLEWKEMVSRQYAPKLTDFLDPREQQIVQSIAGGAEDVRAFFFGGAPFVERKRVFLA 74
Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ-GEKGAQF 198
P + D + ++ F H D LG+++ G+ R + GDI+++ GE QF
Sbjct: 75 PPYIDPEEEDYGIVLFAVRYPAKFVSLEHRDVLGALMSLGLRRGEFGDILIRDGE--IQF 132
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
V E+ADY+ +E +G V+ +PL A + +SLR+DA+ + F+
Sbjct: 133 FVAAEVADYVRLHVETIGKAPVALEPLPLSAAMPLAETWEEGTVTVSSLRLDAVLAQAFR 192
Query: 259 LSRSKLVNLIRYSSLASLVQISAK 282
L+R K L+ + LV+++ K
Sbjct: 193 LAREKARALVE----SGLVKVNWK 212
>gi|402839267|ref|ZP_10887760.1| hypothetical protein HMPREF1143_1598 [Eubacteriaceae bacterium
OBRC8]
gi|402270806|gb|EJU20064.1| hypothetical protein HMPREF1143_1598 [Eubacteriaceae bacterium
OBRC8]
Length = 261
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 91/176 (51%), Gaps = 5/176 (2%)
Query: 96 EVLHSDFLTPPVLKESMMALEKLAD-VKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAA 154
++ +DF+ P + + L ++ + A GG +ER ++ + +P+ + V
Sbjct: 35 DIRRTDFMNPYEQRLFISVLNAFSNEISYQAVGGNENSER-KMFLIYPDYIYEVELPVKL 93
Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE-LADYLITSLE 213
L + GNF F+ SH D LG+++ GI REKIGDI + K +V+ E + +Y+I+++
Sbjct: 94 LRLYGNFKFEKISHRDCLGALMSVGITREKIGDIYVH--KDFIDVVIDEAIGNYMISNIT 151
Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIR 269
+ + S+ +P+ L +SLR+D + + F LSR+ +++I+
Sbjct: 152 SIRHCSIKGKILPIEELTETEIELVKKDYSVSSLRIDNIIAEAFNLSRASAISVIK 207
>gi|260663600|ref|ZP_05864489.1| RNA-binding S4 domain-containing protein [Lactobacillus fermentum
28-3-CHN]
gi|260551826|gb|EEX24941.1| RNA-binding S4 domain-containing protein [Lactobacillus fermentum
28-3-CHN]
Length = 261
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 74/169 (43%), Gaps = 4/169 (2%)
Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL--TSDPDIVAALSITG 159
FL P + + +VK +G YP AE R + +P T D + L I
Sbjct: 39 FLNPRQRYIMRVIANRQDEVKVAFKGAYPGAEMQR-GLAYPAYYQPTEDDFELQLLEINY 97
Query: 160 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 219
F H +G++L TG+ R GDII E Q ++ +L+DYLI + +G
Sbjct: 98 PQKFAELHHRQVMGAVLSTGVERGAFGDIIASDEHW-QIIIQRQLSDYLIEQVTSIGKAK 156
Query: 220 VSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
V + L + T ASLR+DA+ +A F SR++ LI
Sbjct: 157 VRLEKRELQGARAPQEDWQELVTTVASLRLDAVVAASFNYSRNRAKQLI 205
>gi|251782907|ref|YP_002997210.1| hypothetical protein SDEG_1501 [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|242391537|dbj|BAH81996.1| hypothetical protein SDEG_1501 [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
Length = 263
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 90/189 (47%), Gaps = 12/189 (6%)
Query: 86 EMARRASSRREVLHSDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERCRLSVGHP 142
+M R S + +DFL P + L+ LA D+K + Y +E R+ V
Sbjct: 24 DMINRVDSHYLLEVTDFLNP----REITILKSLAVPTDLKVFSSTDYYPSEYGRVIVAPD 79
Query: 143 EALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFL 199
+ D +A + IT F +HG LG+++ GI R +GDI + E G AQ +
Sbjct: 80 YYDLDEADFQIALVEITYQAKFNQLTHGQILGTLINELGIKRSLLGDIFV--ETGYAQLM 137
Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
+ +L Y++T++ K+ SVS IPL L + + +SLR+D L + K
Sbjct: 138 INRQLLGYVLTTISKIARASVSLKEIPLNQLIKSSNDAQLVDIMVSSLRLDRLVATVLKK 197
Query: 260 SRSKLVNLI 268
SR++ + LI
Sbjct: 198 SRAQAMTLI 206
>gi|225378090|ref|ZP_03755311.1| hypothetical protein ROSEINA2194_03750 [Roseburia inulinivorans DSM
16841]
gi|225210091|gb|EEG92445.1| hypothetical protein ROSEINA2194_03750 [Roseburia inulinivorans DSM
16841]
Length = 249
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 101/192 (52%), Gaps = 9/192 (4%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
K +++++R+A+ + VL SDFL L EK + K A GG P AER ++
Sbjct: 9 KKLIDLSRQANRKGIVLFSDFLNLNELNIYHQN-EKFFETKTEASGGVPFAER-QIVAFI 66
Query: 142 PEALTSDPDI-VAALSITGNF-GF-QPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
P+AL + +A L I ++ F + H D LGS++ G+ R K+GDI++ +K F
Sbjct: 67 PDALYYEWQFPIAYLEIVPSYPKFAEKLGHRDILGSMMNLGVDRSKLGDIVICEDK--YF 124
Query: 199 LVVPE-LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
L+ E +A Y + +L+K+ + V + + AL + + + I S R+D++ + +
Sbjct: 125 LICEESMAPYFMENLDKIRHTVVKLSPVSADALG-QQQKFEEKDGIITSNRLDSMIACVY 183
Query: 258 KLSRSKLVNLIR 269
K SRS+ + +
Sbjct: 184 KFSRSQALEFFK 195
>gi|381209821|ref|ZP_09916892.1| hypothetical protein LGrbi_07846 [Lentibacillus sp. Grbi]
Length = 258
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 9/191 (4%)
Query: 100 SDFLTPPVLK-ESMMALEKLADVKAVAQGGYPQAERCRLSVG-HPEALTSDPDIVAALSI 157
+DFL P + +A + +++ GG AER R+ + + +T D + L
Sbjct: 34 TDFLNPREQQIVETLARTSMEELRVYKHGGSVNAERRRVIIAPMYDEVTDDSFQLTLLQG 93
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG-AQFLVVPELADYLITSLEKVG 216
+ + F H D +GS L GI R+K+GDI+ E G Q ++ E+A +++T+L +
Sbjct: 94 SYHDKFVSLGHRDVMGSFLSLGIKRQKLGDIM--AENGLIQIIMAEEIAPFILTNLTAIK 151
Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSLASL 276
+ PL +L I +SLR+D++ A +KLSR +I L
Sbjct: 152 KTRIRLEERPLSSLVERKTNWDESNQIVSSLRLDSVVKAIYKLSRKDAAEMIS----KGL 207
Query: 277 VQISAKASAIR 287
V+++ K S R
Sbjct: 208 VKVNYKVSDDR 218
>gi|160894535|ref|ZP_02075311.1| hypothetical protein CLOL250_02087 [Clostridium sp. L2-50]
gi|156863846|gb|EDO57277.1| S4 domain protein [Clostridium sp. L2-50]
Length = 259
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 88/197 (44%), Gaps = 11/197 (5%)
Query: 83 HILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHP 142
H+ ++A +A + ++FL+ L L ++ + GG +R + G
Sbjct: 10 HLNDLANKAYQKNIYTFTNFLSASDLDIFYSMLPDISHIPYEIFGGRDGCDRVMIRFGSE 69
Query: 143 EALTSD-PDIVAALSIT---GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQG------ 192
+ D P + L IT F SH D LGS++ GI RE GDII++
Sbjct: 70 DTTGYDLPFPITILQITPLMDKFS-DELSHRDVLGSLMNLGIEREMTGDIIMKASSRSGI 128
Query: 193 EKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDAL 252
A V +ADY+ +L ++ + SV C P L + + I AS R+DA+
Sbjct: 129 RNTAYVFCVSSIADYISENLTRIKHTSVRCIPCPDSDLPDITSTLEECQCIAASERIDAV 188
Query: 253 ASAGFKLSRSKLVNLIR 269
+A KLSRS+ V L R
Sbjct: 189 IAAVTKLSRSQTVILFR 205
>gi|149184154|ref|ZP_01862478.1| S4 domain protein [Bacillus sp. SG-1]
gi|148848138|gb|EDL62464.1| S4 domain protein [Bacillus sp. SG-1]
Length = 258
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 10/174 (5%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAE-----RCRLSVGHPEALTSDPDIVAA 154
+DFL P + K +D+K YP E RC L + E SD V
Sbjct: 35 TDFLDPRQQYILSAIIGKNSDIKM---SFYPAQESVERKRCILYPDYFEPSHSDYG-VTL 90
Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 214
I F H LGS++ G+ REK GDI++ ++ Q + E++D++ + ++
Sbjct: 91 FEINYPQKFVTLEHRQILGSLMSIGLKREKFGDILMNSDR-VQMITASEISDFVEMNFQE 149
Query: 215 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
VG V+ ++PL + + + T +SLR+D + SA + +SR K+ LI
Sbjct: 150 VGRNKVTLEKVPLDRMVHSSEEWREALTTVSSLRLDVILSALYNVSRQKVQTLI 203
>gi|408402039|ref|YP_006860003.1| hypothetical protein GGS_1370 [Streptococcus dysgalactiae subsp.
equisimilis RE378]
gi|407968268|dbj|BAM61506.1| hypothetical protein GGS_1370 [Streptococcus dysgalactiae subsp.
equisimilis RE378]
Length = 263
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 90/189 (47%), Gaps = 12/189 (6%)
Query: 86 EMARRASSRREVLHSDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERCRLSVGHP 142
+M R S + +DFL P + L+ LA D+K + Y +E R+ V
Sbjct: 24 DMINRVDSHYLLEVTDFLNP----REITILKSLAVPTDLKVFSSTDYYPSEYGRVIVAPD 79
Query: 143 EALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFL 199
+ D +A + IT F +HG LG+++ GI R +GDI + E G AQ +
Sbjct: 80 YYDLDEADFQIALVEITYQAKFNQLTHGQILGTLINELGIKRSLLGDIFV--ETGYAQLM 137
Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
+ +L Y++T++ K+ SVS IPL L + + +SLR+D L + K
Sbjct: 138 INWQLLGYVLTTISKIARASVSLKEIPLNQLIKSSNDAQLVDIMVSSLRLDRLVATVLKK 197
Query: 260 SRSKLVNLI 268
SR++ + LI
Sbjct: 198 SRAQAMTLI 206
>gi|261419331|ref|YP_003253013.1| RNA-binding S4 domain-containing protein [Geobacillus sp. Y412MC61]
gi|319766147|ref|YP_004131648.1| RNA-binding S4 domain-containing protein [Geobacillus sp. Y412MC52]
gi|261375788|gb|ACX78531.1| RNA-binding S4 domain protein [Geobacillus sp. Y412MC61]
gi|317111013|gb|ADU93505.1| RNA-binding S4 domain protein [Geobacillus sp. Y412MC52]
Length = 257
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 91/204 (44%), Gaps = 8/204 (3%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ +LE S + +DFL P + DV+ GG P ER R +
Sbjct: 15 IDQVLEWKEMVSRQYAPKLTDFLDPREQQIVQSITGGDGDVRVFFFGGAPFVERKRAFLA 74
Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDI-ILQGEKGAQF 198
P + D + ++ F H D LG+++ G+ R K GDI +L GE QF
Sbjct: 75 PPYIDPEEEDYGIVLFAVRYPAKFVSLEHRDVLGALMSLGLRRGKFGDILVLDGE--IQF 132
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
V E+ADY+ +E +G V+ +PL A + +SLR+DA+ + F+
Sbjct: 133 FVAAEVADYVRLHVETIGKAPVALEPLPLSAAMPLAETWEEGTVTVSSLRLDAVLAQAFR 192
Query: 259 LSRSKLVNLIRYSSLASLVQISAK 282
L+R K L+ + LV+++ K
Sbjct: 193 LAREKARALVE----SGLVKVNWK 212
>gi|336054343|ref|YP_004562630.1| cell-division protein [Lactobacillus kefiranofaciens ZW3]
gi|333957720|gb|AEG40528.1| Cell-division protein [Lactobacillus kefiranofaciens ZW3]
Length = 266
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 13/187 (6%)
Query: 98 LHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDP-DI-VAAL 155
L +DFL P K +++ DV GGYP+AE+ R+ + E L P D +
Sbjct: 38 LLTDFLDPG--KRTILKTVVGNDVFIQEYGGYPEAEKKRVYLSE-EWLNLQPADYQIQPY 94
Query: 156 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 215
I + F SH LG++ +GI + GDII + QF EL D+ +++V
Sbjct: 95 EIKYSQKFNRISHSAILGTLANSGIDTDTFGDIITDSKGNWQFFAKKELTDFFEEQIDRV 154
Query: 216 GNVSVSCTRIPLLALEYEPPRTKSFKTIE--ASLRVDALASAGFKLSRSKLVNLIRYSSL 273
G V P+ + P S K IE AS+R+DA+ + + SR ++ +I
Sbjct: 155 GRSQVKLK--PISFKQVLVPEDDSVKQIEIIASMRIDAVLAGISRKSRGQIQKMIE---- 208
Query: 274 ASLVQIS 280
A+LV+++
Sbjct: 209 ANLVKLN 215
>gi|386317425|ref|YP_006013589.1| RNA binding protein [Streptococcus dysgalactiae subsp. equisimilis
ATCC 12394]
gi|417752513|ref|ZP_12400709.1| S4 domain protein [Streptococcus dysgalactiae subsp. equisimilis
SK1249]
gi|417927506|ref|ZP_12570894.1| S4 domain protein [Streptococcus dysgalactiae subsp. equisimilis
SK1250]
gi|323127712|gb|ADX25009.1| RNA binding protein [Streptococcus dysgalactiae subsp. equisimilis
ATCC 12394]
gi|333771711|gb|EGL48627.1| S4 domain protein [Streptococcus dysgalactiae subsp. equisimilis
SK1249]
gi|340765380|gb|EGR87906.1| S4 domain protein [Streptococcus dysgalactiae subsp. equisimilis
SK1250]
Length = 263
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 90/189 (47%), Gaps = 12/189 (6%)
Query: 86 EMARRASSRREVLHSDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERCRLSVGHP 142
+M R S + +DFL P + L+ LA D+K + Y +E R+ V
Sbjct: 24 DMINRVDSHYLLEVTDFLNP----REITILKSLAAPTDLKVFSSTDYYPSEYGRVIVAPD 79
Query: 143 EALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFL 199
+ D +A + IT F +HG LG+++ GI R +GDI + E G AQ +
Sbjct: 80 YYDLDEADFQIALVEITYQAKFNQLTHGQILGTLINELGIKRSLLGDIFV--ETGYAQLM 137
Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
+ +L Y++T++ K+ SVS IPL L + + +SLR+D L + K
Sbjct: 138 INRQLLGYVLTTISKIARASVSLKEIPLNQLIKSSNDAQLVDIMVSSLRLDRLVATVLKK 197
Query: 260 SRSKLVNLI 268
SR++ + LI
Sbjct: 198 SRAQAMTLI 206
>gi|419718759|ref|ZP_14246065.1| S4 domain protein [Lachnoanaerobaculum saburreum F0468]
gi|383305099|gb|EIC96478.1| S4 domain protein [Lachnoanaerobaculum saburreum F0468]
Length = 249
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 92/187 (49%), Gaps = 16/187 (8%)
Query: 85 LEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER---CRLSVGH 141
L++AR A + V HS FL M +L ++K+V GGY +AER C
Sbjct: 13 LDLARNAYFKNIVTHSTFLNLYEQTIFEMIQNELPNIKSVMFGGYSEAERKIVCFYCEKK 72
Query: 142 PEALTSDPDIVAALSIT-GNFGF-QPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFL 199
P D D++ +SI N F + SH DFLG+I+ GI R IGDI + + A +
Sbjct: 73 P-----DFDMLECISIAPSNKKFAEELSHRDFLGAIMNLGIERHMIGDICVV-DNIAHII 126
Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKS-FKTIEA-SLRVDALASAGF 257
++D +I L V + V + +++Y +S +K I S R+D++ + +
Sbjct: 127 TFKSMSDTIINELGTVKHTKVVLNK---ESIDYLKTVNRSEYKKINIPSERLDSVIGSIY 183
Query: 258 KLSRSKL 264
+SRSK+
Sbjct: 184 NISRSKV 190
>gi|333394736|ref|ZP_08476555.1| hypothetical protein LcorcK3_02887 [Lactobacillus coryniformis
subsp. coryniformis KCTC 3167]
gi|420145231|ref|ZP_14652703.1| S4 domain protein [Lactobacillus coryniformis subsp. coryniformis
CECT 5711]
gi|398403137|gb|EJN56406.1| S4 domain protein [Lactobacillus coryniformis subsp. coryniformis
CECT 5711]
Length = 260
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 71/145 (48%), Gaps = 6/145 (4%)
Query: 127 GGYPQAERCRLSVGHPEAL--TSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGY AER R + +PE T + + I F SHG LG+++ GI RE
Sbjct: 63 GGYLAAERKRALI-YPEYFVPTQEDFDIQLFEIHYPTKFATLSHGKVLGTLVNAGIKREV 121
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFK-TI 243
GDI+ G++ QF V +ADY+ T + ++G + V L P S + T
Sbjct: 122 FGDIMTDGDR-WQFFVTASMADYIQTQITQIGRIGVRLEPKDYTEL-LVPKDAWSLEHTT 179
Query: 244 EASLRVDALASAGFKLSRSKLVNLI 268
+SLR+D L SA + +SR + L+
Sbjct: 180 ASSLRIDGLISAVYNISRQRSKELV 204
>gi|228909724|ref|ZP_04073547.1| RNA-binding S4 domain protein [Bacillus thuringiensis IBL 200]
gi|228850013|gb|EEM94844.1| RNA-binding S4 domain protein [Bacillus thuringiensis IBL 200]
Length = 255
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 100/207 (48%), Gaps = 16/207 (7%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE +R + +V +DFL P + M + + DV G P AER R +
Sbjct: 15 VDKVLEW-KRTAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKRALI- 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ E AQ
Sbjct: 72 YPDYLELNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQI 130
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRI---PLLALEYEPPRTKSFKTIEASLRVDALASA 255
+V E+ Y+ +L+ +G V VS + + +L + +E KS +SLR+D + +
Sbjct: 131 VVAKEIVSYIEMNLQAIGKVKVSLSAVQGEQILQI-HEMWGEKSGTV--SSLRLDVMLAE 187
Query: 256 GFKLSRSKLVNLIRYSSLASLVQISAK 282
LSR K+ I+ LV+++ K
Sbjct: 188 MLHLSRQKVQPFIK----NGLVKVNWK 210
>gi|425056577|ref|ZP_18460028.1| S4 domain protein [Enterococcus faecium 505]
gi|403031607|gb|EJY43207.1| S4 domain protein [Enterococcus faecium 505]
Length = 260
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 93/178 (52%), Gaps = 18/178 (10%)
Query: 100 SDFLTPPVLKESMMALEKL----ADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVA 153
++FL P ++S + LE L +D++ + GGY QAER C + + E + D + A
Sbjct: 36 TEFLDP---RQSYI-LETLIRQSSDLRFMFYGGYEQAERKRCLIFPDYYEPVEEDFE-TA 90
Query: 154 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
I F SHG LG+++GTGI R GDII G++ Q + E+ ++ T +
Sbjct: 91 LYEIHYPSKFASLSHGKILGTLVGTGIKRSYFGDIISDGDR-WQVFIANEVDHFVATQVT 149
Query: 214 KVGNVSVSCTRIPLLALEYEPPR---TKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+G V+V P+ E P+ T+ T+ +S+R+D++ S + +SR + LI
Sbjct: 150 KIGKVAVRLE--PIKYTEMILPKDSWTQERGTV-SSMRLDSVISEIYNISRQRSKQLI 204
>gi|339448178|ref|ZP_08651734.1| cell division protein [Lactobacillus fructivorans KCTC 3543]
Length = 263
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 80/152 (52%), Gaps = 10/152 (6%)
Query: 127 GGYPQAERCRLSVGHPEALTSDPDI----VAALSITGNFGFQPCSHGDFLGSILGTGIAR 182
GGY AE R + +P+ P++ +A + I F H LGS++G+GI R
Sbjct: 65 GGYKDAEMKR-GIIYPDYF--HPEVKDYRLALVEIEYPEKFASIHHNQVLGSLMGSGIER 121
Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLAL-EYEPPRTKSFK 241
+ +GDI+ G++ QF+ E+ YL ++++G V V+ + L + + E SF
Sbjct: 122 KVLGDILTDGDR-FQFICEQEMVGYLTQEVDRIGRVKVNLKEVNLSEMIQGENDWVTSFV 180
Query: 242 TIEASLRVDALASAGFKLSRSKLVNLIRYSSL 273
T+ S R+D + S GF++SRS +L+ + +
Sbjct: 181 TL-PSFRLDVVISIGFRISRSVAKSLVEHEKV 211
>gi|315651408|ref|ZP_07904433.1| ribosomal protein S4e [Lachnoanaerobaculum saburreum DSM 3986]
gi|315486367|gb|EFU76724.1| ribosomal protein S4e [Lachnoanaerobaculum saburreum DSM 3986]
Length = 249
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 92/187 (49%), Gaps = 16/187 (8%)
Query: 85 LEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER---CRLSVGH 141
L++AR A + V HS FL M +L ++K+V GGY +AER C
Sbjct: 13 LDLARNAYFKNIVTHSTFLNLYEQTIFEMIQNELPNIKSVMFGGYSEAERKIVCFYCDKK 72
Query: 142 PEALTSDPDIVAALSIT-GNFGF-QPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFL 199
P D D++ +SI N F + SH DFLG+I+ GI R IGDI + + A +
Sbjct: 73 P-----DFDMLECISIAPSNKKFAEELSHRDFLGAIMNLGIERHMIGDICVV-DNIAHII 126
Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKS-FKTIEA-SLRVDALASAGF 257
++D +I L V + V + +++Y +S +K I S R+D++ + +
Sbjct: 127 TFKSMSDTIINELGTVKHTKVVLNK---ESIDYLKTVNRSEYKKINIPSERLDSVIGSIY 183
Query: 258 KLSRSKL 264
+SRSK+
Sbjct: 184 NISRSKV 190
>gi|392987361|ref|YP_006485954.1| S4 domain-containing protein [Enterococcus hirae ATCC 9790]
gi|392334781|gb|AFM69063.1| S4 domain-containing protein [Enterococcus hirae ATCC 9790]
Length = 293
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 89/177 (50%), Gaps = 16/177 (9%)
Query: 100 SDFLTPPVLKESMMALEKL----ADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAA 154
+DFL P ++S + LE L +++ GGY QAER R + +D D V+
Sbjct: 36 TDFLDP---RQSYI-LETLIRQDSELHFSFYGGYEQAERKRCLIFPDYYEPTDEDFEVSL 91
Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 214
I F +HG LG+++GTGI R GDII G++ Q + E+ ++ T + K
Sbjct: 92 YEIHYPSKFASLTHGKVLGTLVGTGIKRAYFGDIISDGDR-WQVFIAREVEQFVATQVTK 150
Query: 215 VGNVSVSCTRIPLLALEYEPPR---TKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+G VSV P+ E P+ T+ T+ SLR+D++ S + +SR + LI
Sbjct: 151 IGKVSVRME--PIKYTELLVPKDGWTQERGTV-TSLRLDSVISEIYNISRQRSKQLI 204
>gi|423332889|ref|ZP_17310671.1| conserved hypothetical protein [Lactobacillus reuteri ATCC 53608]
gi|337728007|emb|CCC03096.1| conserved hypothetical protein [Lactobacillus reuteri ATCC 53608]
Length = 261
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 2/155 (1%)
Query: 120 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT 178
+VK GG+ AE R+ + P S D + AL I F H +G+++G
Sbjct: 57 NVKITMYGGWQGAEMQRVLIYPPYYEPSIEDFALQALEINYPVKFSELHHRQIMGTLIGE 116
Query: 179 GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK 238
G+ R GDI+ G Q +V +A+YL ++E VG + V I A+
Sbjct: 117 GMERNAFGDILTDGAHW-QVIVTKPMAEYLRKNVEHVGRIKVKWIPIATEAVVTPKEEWI 175
Query: 239 SFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSL 273
T +SLR+DA+ + GF SR++ LI + +
Sbjct: 176 PIVTTVSSLRLDAVIAVGFNYSRNRAKQLIEHGQV 210
>gi|229140546|ref|ZP_04269101.1| RNA-binding S4 domain protein [Bacillus cereus BDRD-ST26]
gi|229198009|ref|ZP_04324723.1| RNA-binding S4 domain protein [Bacillus cereus m1293]
gi|228585488|gb|EEK43592.1| RNA-binding S4 domain protein [Bacillus cereus m1293]
gi|228643107|gb|EEK99383.1| RNA-binding S4 domain protein [Bacillus cereus BDRD-ST26]
Length = 241
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 97/200 (48%), Gaps = 15/200 (7%)
Query: 89 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
+RA+ +V +DFL P + M + + DV G QAER R + +P+ L +
Sbjct: 8 KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVAVQFDGATSQAERKRALI-YPDYLVIN 65
Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 206
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 66 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQIVVAKEVVS 124
Query: 207 YLITSLEKVGNVSVSCTRIPLLA---LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 263
Y+ +L+ +G V VS + P+ L+ + + T+ +SLR+D + + +SR K
Sbjct: 125 YIEMNLQSIGKVKVSLS--PVQGEKILQIQETWGEKSGTV-SSLRLDVMLAEMLHISRQK 181
Query: 264 LVNLIRYSSLASLVQISAKA 283
+ I+ LV+++ K
Sbjct: 182 VQPFIK----NGLVKVNWKT 197
>gi|167630162|ref|YP_001680661.1| hypothetical protein HM1_2093 [Heliobacterium modesticaldum Ice1]
gi|167592902|gb|ABZ84650.1| conserved hypothetical protein [Heliobacterium modesticaldum Ice1]
Length = 263
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 89/179 (49%), Gaps = 4/179 (2%)
Query: 90 RASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDP 149
R + R++V +DFL P + K + L V VA GGY AER RL + E D
Sbjct: 32 RRTHRQQV--TDFLEPYLRKAAQELLRGPGGVLCVADGGYEGAERQRLVLLPDEEDRPDS 89
Query: 150 DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLI 209
I L+ G + H D+LG++LG GI REK+GD + + E+G ++ ++A Y+
Sbjct: 90 RICWVLAEPVRKG-ERIGHRDYLGALLGLGIRREKVGD-LKRTERGCAVVLDCDVARYVE 147
Query: 210 TSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+V +++ I + + ASLR+DAL +A + LSRS+ +I
Sbjct: 148 AQWRQVRQSALTVRVIDDGTVHAFIDEGEERTITVASLRLDALIAAIWHLSRSRADEVI 206
>gi|229019100|ref|ZP_04175935.1| RNA-binding S4 domain protein [Bacillus cereus AH1273]
gi|229025344|ref|ZP_04181762.1| RNA-binding S4 domain protein [Bacillus cereus AH1272]
gi|228735929|gb|EEL86506.1| RNA-binding S4 domain protein [Bacillus cereus AH1272]
gi|228742200|gb|EEL92365.1| RNA-binding S4 domain protein [Bacillus cereus AH1273]
Length = 241
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 9/197 (4%)
Query: 89 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
++A+ +V +DFL P + M + + +V G P++ER R + +P+ L +
Sbjct: 8 KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GEVAVRFDGAMPESERKRALI-YPDYLELN 65
Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 206
+ V L I F H LG+ + G+ REK GDI+LQ E AQ V E+A
Sbjct: 66 EEEFQVEVLEIDYPSKFYTLEHRQILGAFMSLGLTREKCGDILLQ-ENRAQIAVAKEVAS 124
Query: 207 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 266
Y+ +L+ +G V VS T + + + +SLR+D L + +SR K+
Sbjct: 125 YIEMNLQSIGKVKVSLTPVQAEQILRVGEKWGEKSGTVSSLRLDVLLAEMLHISRQKVQP 184
Query: 267 LIRYSSLASLVQISAKA 283
LI+ LV+++ K
Sbjct: 185 LIK----GGLVKVNWKT 197
>gi|422860639|ref|ZP_16907283.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK330]
gi|327469022|gb|EGF14494.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK330]
Length = 261
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 86/189 (45%), Gaps = 10/189 (5%)
Query: 85 LEMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG- 140
LE+ +R + FL P +LK + K DV+ A Y +E R+ V
Sbjct: 21 LELLQRVQDTYAFETTSFLNPHQVSILKN----IGKQYDVQVFASSDYFPSELARVLVAP 76
Query: 141 HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFL 199
L D ++ L I+ F SH +G++L GI R GDI++ G++ AQ
Sbjct: 77 SYYQLNMDDFELSLLEISYASKFYKISHSQIMGTLLNQLGIERRTFGDILVVGDR-AQLF 135
Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
V LA Y I + KV + V + E + + + + +SLR+D L ++ FKL
Sbjct: 136 VDKRLAQYFIDHVTKVAKMPVKLKEVSFEEQLKEQKQAVTREILASSLRLDKLVASTFKL 195
Query: 260 SRSKLVNLI 268
SRS+ LI
Sbjct: 196 SRSQAAQLI 204
>gi|229157476|ref|ZP_04285553.1| RNA-binding S4 domain protein [Bacillus cereus ATCC 4342]
gi|228625926|gb|EEK82676.1| RNA-binding S4 domain protein [Bacillus cereus ATCC 4342]
Length = 241
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 98/200 (49%), Gaps = 15/200 (7%)
Query: 89 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
+RA+ +V +DFL P + M + + +V G QAER R + +P+ L +
Sbjct: 8 KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GEVAVQFDGATSQAERKRALI-YPDYLVVN 65
Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 206
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 66 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQIVVAKEVVS 124
Query: 207 YLITSLEKVGNVSVSCTRIPLLA---LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 263
Y+ +L+ +G V VS + P+ L+ + + T+ +SLR+D + + +SR K
Sbjct: 125 YIEMNLQSIGKVKVSLS--PVQGEKILQIQETWGEKSGTV-SSLRLDVMLAEMLHISRQK 181
Query: 264 LVNLIRYSSLASLVQISAKA 283
+ LI+ LV+++ K
Sbjct: 182 VQPLIK----NGLVKVNWKT 197
>gi|329116034|ref|ZP_08244751.1| S4 domain protein [Streptococcus parauberis NCFD 2020]
gi|326906439|gb|EGE53353.1| S4 domain protein [Streptococcus parauberis NCFD 2020]
Length = 264
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 90/190 (47%), Gaps = 4/190 (2%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ + E+ R + +DFL P + + + +L +++ + Y E R+ +
Sbjct: 20 IDKVSEIINRVEDTYVINITDFLNPRQI-DILKSLVAPTELQTFSSNDYYGTEYGRVIIA 78
Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQF 198
D + L I N F H LG+++ GI RE +GDI+++ E AQ
Sbjct: 79 PAYYQFDQNDFELDLLEINYNAKFNQLRHSQILGTLINELGIKRESMGDILVE-EGYAQL 137
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
++ L +Y + ++ K+G SV+ +IP+ L E S + +SLR+D + ++ K
Sbjct: 138 MISHHLLNYFLGNISKIGRASVTLKKIPINQLIKEANEMTSTDILVSSLRIDLIMASVIK 197
Query: 259 LSRSKLVNLI 268
+SRS+ + I
Sbjct: 198 ISRSQAMKFI 207
>gi|333905370|ref|YP_004479241.1| hypothetical protein STP_1121 [Streptococcus parauberis KCTC 11537]
gi|333120635|gb|AEF25569.1| hypothetical protein STP_1121 [Streptococcus parauberis KCTC 11537]
gi|456371347|gb|EMF50243.1| hypothetical protein SPJ2_1063 [Streptococcus parauberis KRS-02109]
gi|457094971|gb|EMG25466.1| hypothetical protein SPJ1_0877 [Streptococcus parauberis KRS-02083]
Length = 264
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 90/190 (47%), Gaps = 4/190 (2%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ + E+ R + +DFL P + + + +L +++ + Y E R+ +
Sbjct: 20 IDKVSEIINRVEDTYVINVTDFLNPRQI-DILKSLVAPTELQTFSSNDYYGTEYGRVIIA 78
Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQF 198
D + L I N F H LG+++ GI RE +GDI+++ E AQ
Sbjct: 79 PAYYQFDQNDFELDLLEINYNAKFNQLRHSQILGTLINELGIKRESMGDILVE-EGYAQL 137
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
++ L +Y + ++ K+G SV+ +IP+ L E S + +SLR+D + ++ K
Sbjct: 138 MISHHLLNYFLGNISKIGRASVTLKKIPINQLIKEANEMTSTDILVSSLRIDLIMASVIK 197
Query: 259 LSRSKLVNLI 268
+SRS+ + I
Sbjct: 198 ISRSQAMKFI 207
>gi|116629833|ref|YP_815005.1| cell division protein [Lactobacillus gasseri ATCC 33323]
gi|282851657|ref|ZP_06261022.1| S4 domain protein [Lactobacillus gasseri 224-1]
gi|420148405|ref|ZP_14655673.1| S4 domain protein [Lactobacillus gasseri CECT 5714]
gi|116095415|gb|ABJ60567.1| Cell division protein, S4-like domain [Lactobacillus gasseri ATCC
33323]
gi|282557625|gb|EFB63222.1| S4 domain protein [Lactobacillus gasseri 224-1]
gi|398399957|gb|EJN53553.1| S4 domain protein [Lactobacillus gasseri CECT 5714]
Length = 265
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 79/179 (44%), Gaps = 9/179 (5%)
Query: 94 RREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSV-GHPEALTSDP 149
+ E + +DFL P + +E + +L GG+ AE+ RL + +A
Sbjct: 34 KNEPILTDFLNPREQYIFREIVGGYAQLYSF-----GGFSNAEKKRLLLCDWGQAYEPSM 88
Query: 150 DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLI 209
V L I + +H LG + GI + GDII QF V EL DY I
Sbjct: 89 FKVTLLEIDYPQKWSELTHSQILGVLTHLGIELDTFGDIINDENGKWQFFVKTELKDYFI 148
Query: 210 TSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+ +VG V +PL + + +K I SLR+DA+ SA LSRS++ +I
Sbjct: 149 EQVTRVGRTKVKLHDLPLSKVLAQEDDSKELSVITISLRLDAVVSAVTNLSRSQVKKII 207
>gi|311068062|ref|YP_003972985.1| factor involved in shape determination, RNA-binding fold protein
[Bacillus atrophaeus 1942]
gi|419823957|ref|ZP_14347490.1| factor involved in shape determination, RNA-binding fold protein
[Bacillus atrophaeus C89]
gi|310868579|gb|ADP32054.1| factor involved in shape determination, RNA-binding fold protein
[Bacillus atrophaeus 1942]
gi|388471994|gb|EIM08784.1| factor involved in shape determination, RNA-binding fold protein
[Bacillus atrophaeus C89]
Length = 258
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 8/193 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ---GGYPQAERCRL 137
+ LE R + + +DFL P +E ++A + +V GGY AER R
Sbjct: 16 IDQALEWKRIVQEQYRMKLTDFLDP---REQVIAASVIGQADSVGLALFGGYDGAERKRA 72
Query: 138 SVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
+ A + D + A + F H LGS++G G+ R+K GD++ E
Sbjct: 73 LLYPDYANPEETDFGLQAFEVHYPEKFVSIDHRSLLGSLMGIGLKRQKFGDLVF-AESAV 131
Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
Q +V E AD++ L + G V+ +I L L+ + +SLR+DA+ ++
Sbjct: 132 QLIVTAETADFVAGQLTQAGKAKVNLEKISLSDLQIPARDVEIRDDTVSSLRLDAVCASM 191
Query: 257 FKLSRSKLVNLIR 269
+ SR K + L++
Sbjct: 192 SRQSRQKALTLVK 204
>gi|229061503|ref|ZP_04198847.1| RNA-binding S4 domain protein [Bacillus cereus AH603]
gi|229134707|ref|ZP_04263516.1| RNA-binding S4 domain protein [Bacillus cereus BDRD-ST196]
gi|423367942|ref|ZP_17345374.1| hypothetical protein IC3_03043 [Bacillus cereus VD142]
gi|423489074|ref|ZP_17465756.1| hypothetical protein IEU_03697 [Bacillus cereus BtB2-4]
gi|423494799|ref|ZP_17471443.1| hypothetical protein IEW_03697 [Bacillus cereus CER057]
gi|423498409|ref|ZP_17475026.1| hypothetical protein IEY_01636 [Bacillus cereus CER074]
gi|423511932|ref|ZP_17488463.1| hypothetical protein IG3_03429 [Bacillus cereus HuA2-1]
gi|423518589|ref|ZP_17495070.1| hypothetical protein IG7_03659 [Bacillus cereus HuA2-4]
gi|423598791|ref|ZP_17574791.1| hypothetical protein III_01593 [Bacillus cereus VD078]
gi|423661263|ref|ZP_17636432.1| hypothetical protein IKM_01660 [Bacillus cereus VDM022]
gi|423669472|ref|ZP_17644501.1| hypothetical protein IKO_03169 [Bacillus cereus VDM034]
gi|423674349|ref|ZP_17649288.1| hypothetical protein IKS_01892 [Bacillus cereus VDM062]
gi|228648753|gb|EEL04779.1| RNA-binding S4 domain protein [Bacillus cereus BDRD-ST196]
gi|228717737|gb|EEL69387.1| RNA-binding S4 domain protein [Bacillus cereus AH603]
gi|401082803|gb|EJP91068.1| hypothetical protein IC3_03043 [Bacillus cereus VD142]
gi|401150892|gb|EJQ58344.1| hypothetical protein IEW_03697 [Bacillus cereus CER057]
gi|401160458|gb|EJQ67836.1| hypothetical protein IEY_01636 [Bacillus cereus CER074]
gi|401160797|gb|EJQ68172.1| hypothetical protein IG7_03659 [Bacillus cereus HuA2-4]
gi|401237061|gb|EJR43518.1| hypothetical protein III_01593 [Bacillus cereus VD078]
gi|401298599|gb|EJS04199.1| hypothetical protein IKO_03169 [Bacillus cereus VDM034]
gi|401301304|gb|EJS06893.1| hypothetical protein IKM_01660 [Bacillus cereus VDM022]
gi|401309900|gb|EJS15233.1| hypothetical protein IKS_01892 [Bacillus cereus VDM062]
gi|402432322|gb|EJV64381.1| hypothetical protein IEU_03697 [Bacillus cereus BtB2-4]
gi|402450193|gb|EJV82027.1| hypothetical protein IG3_03429 [Bacillus cereus HuA2-1]
Length = 255
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 98/205 (47%), Gaps = 10/205 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE ++A+ +V +DFL P + M + + DV G P+AER R +
Sbjct: 15 VDKVLEW-KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVRFDGAMPEAERKRALI- 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ E AQ
Sbjct: 72 YPDYLELNEEEFQVEVLEIDYPSKFFTLEHRQILGAFMSLGLTREKCGDILLQ-EDRAQI 130
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
V E+ Y+ +L+ +G + V+ + I + + + +SLR+D L +
Sbjct: 131 AVAKEVVSYIEMNLQSIGKMKVTLSPIQVEKILRVGEKWGEKSGTVSSLRLDVLLAEMLH 190
Query: 259 LSRSKLVNLIRYSSLASLVQISAKA 283
+SR K+ LI+ LV+++ K
Sbjct: 191 ISRQKVQPLIK----GGLVKVNWKT 211
>gi|422419651|ref|ZP_16496606.1| S4 domain-containing protein [Listeria seeligeri FSL N1-067]
gi|313632501|gb|EFR99511.1| S4 domain-containing protein [Listeria seeligeri FSL N1-067]
Length = 258
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 91/205 (44%), Gaps = 8/205 (3%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ IL + R + +DFL P + + +K GG AER R +
Sbjct: 16 IDKILGITMRVENEYTPQLTDFLDPRQRYITETVIGGYDQIKVQFFGGVAHAERRRALI- 74
Query: 141 HPEALT-SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P+ T ++ D +A I F +H LG+++ G+ R+ GDI+ G + Q
Sbjct: 75 YPDYYTPTEADFEIALFHIRYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGSE-WQL 133
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
LV + DYL LEK+G V+V L + P + +S+R+D + S
Sbjct: 134 LVESTMKDYLTLQLEKIGKVNVMLEETDLSEATFTPTVWEESGLTVSSMRLDVIISNAHH 193
Query: 259 LSRSKLVNLIRYSSLASLVQISAKA 283
+SR K L+ +A LV+++ K
Sbjct: 194 ISRQKAKQLV----VAGLVKVNWKT 214
>gi|423522271|ref|ZP_17498744.1| hypothetical protein IGC_01654 [Bacillus cereus HuA4-10]
gi|401176020|gb|EJQ83219.1| hypothetical protein IGC_01654 [Bacillus cereus HuA4-10]
Length = 255
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 98/205 (47%), Gaps = 10/205 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE ++A+ +V +DFL P + M + + DV G P+AER R +
Sbjct: 15 VDKVLEW-KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVRFDGAMPEAERKRALI- 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ E AQ
Sbjct: 72 YPDYLELNKEEFQVEVLEIDYPSKFFTLEHRQILGAFMSLGLTREKCGDILLQ-ENRAQI 130
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
V E+ Y+ +L+ +G + V+ + I + + + +SLR+D L +
Sbjct: 131 AVAKEVVSYIEMNLQSIGKMKVTLSPIQVEKVLRVGEKWGEKSGTVSSLRLDVLLAEMMH 190
Query: 259 LSRSKLVNLIRYSSLASLVQISAKA 283
+SR K+ LI+ LV+++ K
Sbjct: 191 ISRQKVQPLIK----GGLVKVNWKT 211
>gi|363889582|ref|ZP_09316942.1| hypothetical protein HMPREF9628_00269 [Eubacteriaceae bacterium
CM5]
gi|361966649|gb|EHL19548.1| hypothetical protein HMPREF9628_00269 [Eubacteriaceae bacterium
CM5]
Length = 261
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 91/176 (51%), Gaps = 5/176 (2%)
Query: 96 EVLHSDFLTPPVLKESMMALEKLAD-VKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAA 154
++ +DF+ P + + L ++ + A GG +ER ++ + +P+ + V
Sbjct: 35 DIRRTDFMNPYEQRLFISVLNAFSNEISYQAVGGNENSER-KMFLIYPDYIYEVELPVKL 93
Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE-LADYLITSLE 213
L + GNF F+ SH D LG+++ GI REKIGDI + K +V+ E + +Y+I+++
Sbjct: 94 LRLYGNFKFEKISHRDCLGALMSVGITREKIGDIYVH--KDFIDVVIDEAIGNYMISNIT 151
Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIR 269
+ + S+ +P+ L +SLR+D + + F LSR+ +++I+
Sbjct: 152 SIRHCSIKGKILPIEELTETEIELVKKDYSVSSLRLDNIIAEAFNLSRASAISVIK 207
>gi|422849173|ref|ZP_16895849.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK115]
gi|325690194|gb|EGD32198.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK115]
Length = 261
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 87/189 (46%), Gaps = 10/189 (5%)
Query: 85 LEMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG- 140
LE+ +R + FL P +LK + K DV+ A + +E R+ V
Sbjct: 21 LELLQRVQDTYAFETTSFLNPHQVSILKN----IGKQYDVQVFASTDFFPSELARVLVAP 76
Query: 141 HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFL 199
L D ++ L I+ F SH +G++L GI R GDI++ G++ AQ
Sbjct: 77 SYYQLNMDDFELSLLEISYASKFYKISHSQIMGTLLNHLGIERRTFGDILVVGDR-AQLF 135
Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
V LA Y I + K+ + V + E + + + + +SLR+D L ++ FKL
Sbjct: 136 VDKRLAQYFIDHVSKIAKMPVKLKEVSFAEQLREQKQAVTKEILASSLRLDKLVASTFKL 195
Query: 260 SRSKLVNLI 268
SRS+ V LI
Sbjct: 196 SRSQAVQLI 204
>gi|153810900|ref|ZP_01963568.1| hypothetical protein RUMOBE_01284 [Ruminococcus obeum ATCC 29174]
gi|149833296|gb|EDM88378.1| S4 domain protein [Ruminococcus obeum ATCC 29174]
Length = 206
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 78/147 (53%), Gaps = 10/147 (6%)
Query: 127 GGYPQAERCRLSVGHPEAL----TSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAR 182
GGY QAER ++ HP+AL + A + F + +H DFLG++L GI R
Sbjct: 10 GGYEQAER-QMVAFHPDALLFPWKYPIKCLKAEPLAAKFS-EDLTHRDFLGAVLNLGIER 67
Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEP-PRTKSFK 241
IGDI++Q + A ++ADY+I +L +V + ++ + + LE+ P P +
Sbjct: 68 AVIGDILVQ-KHTAWIFCHEKIADYIIENLTRVRHTTMKLSMVD--NLEHIPEPEFQEIN 124
Query: 242 TIEASLRVDALASAGFKLSRSKLVNLI 268
AS+R+DAL F+ SR+ +V I
Sbjct: 125 GTCASVRLDALIGLAFQTSRNSMVPFI 151
>gi|363895505|ref|ZP_09322500.1| hypothetical protein HMPREF9629_00782 [Eubacteriaceae bacterium
ACC19a]
gi|361957257|gb|EHL10567.1| hypothetical protein HMPREF9629_00782 [Eubacteriaceae bacterium
ACC19a]
Length = 261
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 91/176 (51%), Gaps = 5/176 (2%)
Query: 96 EVLHSDFLTPPVLKESMMALEKLAD-VKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAA 154
++ +DF+ P + + L ++ + A GG +ER ++ + +P+ + +
Sbjct: 35 DIRRTDFMNPYEQRLFISVLNAFSNEISCQAVGGNENSER-KMFLIYPDYIYEVELPIKL 93
Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE-LADYLITSLE 213
L + GNF F+ SH D LG+++ GI REKIGDI + K +V+ E + +Y+I+++
Sbjct: 94 LRLYGNFKFEKISHRDCLGALMSVGITREKIGDIYVH--KDFIDVVIDEAIGNYMISNIT 151
Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIR 269
+ + S+ +P+ L +SLR+D + + F LSR+ +++I+
Sbjct: 152 SIRHCSIKGKILPIEELTETEIELVKKDYSVSSLRLDNIIAEAFNLSRASAISVIK 207
>gi|422422742|ref|ZP_16499695.1| S4 domain-containing protein [Listeria seeligeri FSL S4-171]
gi|313637033|gb|EFS02602.1| S4 domain-containing protein [Listeria seeligeri FSL S4-171]
Length = 259
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 91/205 (44%), Gaps = 8/205 (3%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ IL + R + +DFL P + + +K GG AER R +
Sbjct: 17 IDKILGITMRVENEYTPQLTDFLDPRQRYITETVIGGYDQIKVQFFGGVAHAERRRALI- 75
Query: 141 HPEALT-SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P+ T ++ D +A I F +H LG+++ G+ R+ GDI+ G + Q
Sbjct: 76 YPDYYTPTEADFEIALFHIRYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGSE-WQL 134
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
LV + DYL LEK+G V+V L + P + +S+R+D + S
Sbjct: 135 LVESTMKDYLTLQLEKIGKVNVMLEETDLSEATFTPTVWEESGLTVSSMRLDVIISNAHH 194
Query: 259 LSRSKLVNLIRYSSLASLVQISAKA 283
+SR K L+ +A LV+++ K
Sbjct: 195 ISRQKAKQLV----VAGLVKVNWKT 215
>gi|354558730|ref|ZP_08977984.1| RNA-binding S4 domain protein [Desulfitobacterium metallireducens
DSM 15288]
gi|353545792|gb|EHC15242.1| RNA-binding S4 domain protein [Desulfitobacterium metallireducens
DSM 15288]
Length = 265
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 91/198 (45%), Gaps = 10/198 (5%)
Query: 80 EVKHILEMARRASSRREVLHSDFLTPPVLK--ESMMALEKLADVKAVAQGGYPQAER-CR 136
E H+L++A A + + FL + + E ++ E L+ AQGG+ +ER C
Sbjct: 21 EAAHLLDLADEAIDNSLSVRTPFLGLSLAQWFEGVIQKESLS---YKAQGGFSDSERVCY 77
Query: 137 LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
+ + L + + L + H LGS++G G+ RE IGD I G +G
Sbjct: 78 FLGQNGQDLDQVQNGITLLEVLSTDPHVALEHRQILGSLMGLGLKRELIGD-IHSGIRGM 136
Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASA 255
VV E+ADYL+ G ++ R+ L L +P + AS R+DA+ ++
Sbjct: 137 IVAVVDEIADYLLQEWRMAGRANIRVERVQGELNLREDPGEERRITV--ASSRIDAIVAS 194
Query: 256 GFKLSRSKLVNLIRYSSL 273
GF ++R + IR +
Sbjct: 195 GFNVARGVVQEWIRQGKI 212
>gi|448237302|ref|YP_007401360.1| putative RNA-binding protein [Geobacillus sp. GHH01]
gi|445206144|gb|AGE21609.1| putative RNA-binding protein [Geobacillus sp. GHH01]
Length = 257
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 92/204 (45%), Gaps = 8/204 (3%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ +LE S + +DFL P + DV+ GG P ER R +
Sbjct: 15 IDQVLEWKEMVSRQYAPKLTDFLDPREQQIVQSITGGDGDVRVFFFGGAPFVERKRAFLA 74
Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ-GEKGAQF 198
P + D + ++ F H D LG+++ G+ R K GDI+++ GE QF
Sbjct: 75 PPYIDPEEEDYGIVLFAVRYPAKFVSLEHRDVLGALMSLGLRRGKFGDILVRDGE--IQF 132
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
V E+ADY+ +E +G V+ +PL A + +SLR+DA+ + F+
Sbjct: 133 FVAAEVADYVRLHIEMIGKARVALEPLPLSAAMPLAETWEEGTVTVSSLRLDAVLAQAFR 192
Query: 259 LSRSKLVNLIRYSSLASLVQISAK 282
L+R K L+ + LV+++ K
Sbjct: 193 LAREKARALVE----SGLVKVNWK 212
>gi|259047006|ref|ZP_05737407.1| S4 domain-containing protein YlmH [Granulicatella adiacens ATCC
49175]
gi|259036325|gb|EEW37580.1| S4 domain-containing protein YlmH [Granulicatella adiacens ATCC
49175]
Length = 263
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 69/151 (45%), Gaps = 4/151 (2%)
Query: 120 DVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
DV+ GGY AER C + + E D + A I F HG LGS++
Sbjct: 56 DVRYYFDGGYIDAERKRCMICPDYYEPTLEDFE-NALFHIQYPKKFATLGHGKILGSLMS 114
Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
G R IGDII GE Q + +Y+ LEK+G V+V + L
Sbjct: 115 LGFDRSLIGDIISNGE-DWQLFCAQNMKEYIKQQLEKIGKVAVRLEEVDYTKLIVPVDHW 173
Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+ +T+ +SLR+D + ++ F +SR + +I
Sbjct: 174 TNIQTVVSSLRLDTVIASVFNVSRQRSKEMI 204
>gi|299821564|ref|ZP_07053452.1| S4 domain-containing protein YlmH [Listeria grayi DSM 20601]
gi|299817229|gb|EFI84465.1| S4 domain-containing protein YlmH [Listeria grayi DSM 20601]
Length = 258
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 10/167 (5%)
Query: 120 DVKAVAQGGYPQAERCRLSV--GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
++K GG ER R + + E +D +I A I F +H LG+++
Sbjct: 55 NIKVAFNGGRAHTERVRALIYPDYYEPAETDFEI-ALFQIRYPVKFTTLTHQKILGTLMS 113
Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLL-ALEYEPPR 236
G+ R+ GDI L+ E QF V + DYL T +EK+G V+V +PL A+
Sbjct: 114 LGMKRDIFGDI-LEKEDIWQFFVEASMKDYLSTQIEKIGKVNVMLEEVPLTDAILTHVDW 172
Query: 237 TKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSLASLVQISAKA 283
+ T+ +SLR+D L +A +SR K L++ LV+++ K
Sbjct: 173 IEKAITV-SSLRLDVLIAASHNISRQKAKQLVQ----GGLVRVNWKT 214
>gi|238853974|ref|ZP_04644331.1| cell division protein [Lactobacillus gasseri 202-4]
gi|238833419|gb|EEQ25699.1| cell division protein [Lactobacillus gasseri 202-4]
Length = 265
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 79/179 (44%), Gaps = 9/179 (5%)
Query: 94 RREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSV-GHPEALTSDP 149
+ E + +DFL P + +E + +L GG+ AE+ RL + +A
Sbjct: 34 KNEPILTDFLNPREQYIFREIVGGYAQLYSF-----GGFSNAEKKRLLLCDWGQAYEPSM 88
Query: 150 DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLI 209
V L I + +H LG + GI + GDII QF V EL DY I
Sbjct: 89 FKVTLLEIDYPQKWSELTHSQILGVLTHLGIELDTFGDIINDENGKWQFFVKTELKDYFI 148
Query: 210 TSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+ +VG V +PL + + +K I SLR+DA+ SA LSRS++ +I
Sbjct: 149 EQVTRVGRTKVKLHDLPLSKVLAQEDDSKELIVITISLRLDAVVSAVTNLSRSQVKKII 207
>gi|163941637|ref|YP_001646521.1| RNA-binding S4 domain-containing protein [Bacillus
weihenstephanensis KBAB4]
gi|163863834|gb|ABY44893.1| RNA-binding S4 domain protein [Bacillus weihenstephanensis KBAB4]
Length = 255
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 98/205 (47%), Gaps = 10/205 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE ++A+ +V +DFL P + M + + DV G P+AER R +
Sbjct: 15 VDKVLEW-KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVVVRFDGAMPEAERKRALI- 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ E AQ
Sbjct: 72 YPDYLELNEEEFQVEVLEIDYPSKFFTLEHRQILGAFMSLGLTREKCGDILLQ-EDRAQI 130
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
V E+ Y+ +L+ +G + V+ + I + + + +SLR+D L +
Sbjct: 131 AVAKEVVSYIEMNLQSIGKMKVTLSPIQVEKILRVGEKWGEKSGTVSSLRLDVLLAEMLH 190
Query: 259 LSRSKLVNLIRYSSLASLVQISAKA 283
+SR K+ LI+ LV+++ K
Sbjct: 191 ISRQKVQPLIK----GGLVKVNWKT 211
>gi|210612739|ref|ZP_03289454.1| hypothetical protein CLONEX_01656 [Clostridium nexile DSM 1787]
gi|210151432|gb|EEA82440.1| hypothetical protein CLONEX_01656 [Clostridium nexile DSM 1787]
Length = 264
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 97/208 (46%), Gaps = 12/208 (5%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLK--ESMMALEKLADVKAV 124
D+ + K + K ++E++R + R V +SDFL L +M E K
Sbjct: 8 DIRTSIMQKEELMLQKRLIELSRLSYQRGIVTYSDFLNLNELNILHTMPKTELYTTYKVF 67
Query: 125 AQGGYPQAERCRLSVGHPEALTSDP----DIVAALSITGNFGFQPCSHGDFLGSILGTGI 180
GGY +ER ++ P+A + ++ + F + SH D+LG++L GI
Sbjct: 68 --GGYDFSER-QMVAFLPDAFCYEYFYPISVLKIRPLQKKFS-EALSHRDYLGAVLNLGI 123
Query: 181 AREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSF 240
R KIGDI++Q E A V L ++ L+++ + SV Y P +
Sbjct: 124 ERSKIGDILVQ-EDSAILFVHQSLEQFIQDELKRIRHTSVMAEPENFEKFSYTPQIEEKK 182
Query: 241 KTIEASLRVDALASAGFKLSRSKLVNLI 268
T+ +SLR+D+L + F SR+KLV I
Sbjct: 183 GTV-SSLRLDSLLALAFSSSRTKLVPYI 209
>gi|363892722|ref|ZP_09319881.1| hypothetical protein HMPREF9630_01959 [Eubacteriaceae bacterium
CM2]
gi|361963025|gb|EHL16116.1| hypothetical protein HMPREF9630_01959 [Eubacteriaceae bacterium
CM2]
Length = 261
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 91/176 (51%), Gaps = 5/176 (2%)
Query: 96 EVLHSDFLTPPVLKESMMALEKLAD-VKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAA 154
++ +DF+ P + + L ++ + A GG +ER ++ + +P+ + +
Sbjct: 35 DIRRTDFMNPYEQRLFISVLNAFSNEISYQAVGGNENSER-KMFLIYPDYIYEVELPIKL 93
Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE-LADYLITSLE 213
L + GNF F+ SH D LG+++ GI REKIGDI + K +V+ E + +Y+I+++
Sbjct: 94 LRLYGNFKFEKISHRDCLGALMSVGITREKIGDIYVH--KDFIDVVIDEAIGNYMISNIT 151
Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIR 269
+ + S+ +P+ L +SLR+D + + F LSR+ +++I+
Sbjct: 152 SIRHCSIKGKILPIEELTETEIELVKKDYSVSSLRLDNIIAEAFNLSRASAISVIK 207
>gi|297530699|ref|YP_003671974.1| RNA-binding S4 domain-containing protein [Geobacillus sp. C56-T3]
gi|297253951|gb|ADI27397.1| RNA-binding S4 domain protein [Geobacillus sp. C56-T3]
Length = 257
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 92/204 (45%), Gaps = 8/204 (3%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ +LE S + +DFL P + DV+ GG P ER R +
Sbjct: 15 IDQVLEWKEMVSRQYAPKLTDFLDPREQQIVQSITGGDGDVRVFFFGGAPFVERKRAFLA 74
Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ-GEKGAQF 198
P + D + ++ F H D LG+++ G+ R K GDI+++ GE QF
Sbjct: 75 PPYIDPEEEDYGIVLFAVRYPAKFVSLEHRDVLGALMSLGLRRGKFGDILVRDGE--IQF 132
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
V E+ADY+ +E +G V+ +PL A + +SLR+DA+ + F+
Sbjct: 133 FVAAEVADYVRLHVETIGKAPVALEPLPLSAAMPLAETWEEGTVTVSSLRLDAVLAQAFR 192
Query: 259 LSRSKLVNLIRYSSLASLVQISAK 282
L+R K L+ + LV+++ K
Sbjct: 193 LAREKARALVE----SGLVKVNWK 212
>gi|408356933|ref|YP_006845464.1| hypothetical protein AXY_15700 [Amphibacillus xylanus NBRC 15112]
gi|407727704|dbj|BAM47702.1| hypothetical protein AXY_15700 [Amphibacillus xylanus NBRC 15112]
Length = 260
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 88/191 (46%), Gaps = 2/191 (1%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ +L + + +SDFL P + + K V GG P AER + +
Sbjct: 15 IDQVLSWKDQVEKQYITKYSDFLDPREQYIFQNIIGQDEQFKLVFFGGIPNAERKQAILA 74
Query: 141 -HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA-QF 198
E + S+ ++ L+ F H D LG+ L G+ R+K+GD+ + ++G Q
Sbjct: 75 PFYEEIDSNSFPISVLTTKYPAKFVTIEHRDVLGAFLSLGLLRKKLGDLSIDPDQGIIQL 134
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
+V +++D++I + N +V IPL + +T +SLR+D + ++
Sbjct: 135 IVSADISDFIIAQFNSIKNANVQFQPIPLSKAIDSKDEWSNHETTVSSLRLDVMIKHIYR 194
Query: 259 LSRSKLVNLIR 269
SR++ + LI+
Sbjct: 195 FSRTQALELIK 205
>gi|422879369|ref|ZP_16925835.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK1059]
gi|422929215|ref|ZP_16962157.1| S4 domain-containing protein YlmH [Streptococcus sanguinis ATCC
29667]
gi|422932186|ref|ZP_16965117.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK340]
gi|332366081|gb|EGJ43837.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK1059]
gi|339615031|gb|EGQ19714.1| S4 domain-containing protein YlmH [Streptococcus sanguinis ATCC
29667]
gi|339618970|gb|EGQ23560.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK340]
Length = 261
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 86/189 (45%), Gaps = 10/189 (5%)
Query: 85 LEMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG- 140
LE+ +R + FL P +LK + K DV+ A Y +E R+ V
Sbjct: 21 LELLQRVQDTYAFETTSFLNPHQVSILKN----IGKQYDVQVFASSDYFPSELARVLVAP 76
Query: 141 HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFL 199
L D ++ L I F SH +G++L GI R GDI++ G++ AQ
Sbjct: 77 SYYQLNMDDFELSLLEIYYASKFYKISHSQIMGTLLNQLGIERRTFGDILVVGDR-AQLF 135
Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
V L+ Y I + K+ + V + L E + + + + +SLR+D L ++ FKL
Sbjct: 136 VDKRLSQYFIDHVSKIAKMPVRLKEVSLAEQLKEQKQAVTREILASSLRLDKLVASTFKL 195
Query: 260 SRSKLVNLI 268
SRS+ LI
Sbjct: 196 SRSQAAQLI 204
>gi|422883610|ref|ZP_16930059.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK49]
gi|332362883|gb|EGJ40676.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK49]
Length = 261
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 85/189 (44%), Gaps = 10/189 (5%)
Query: 85 LEMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG- 140
LE+ +R + FL P +LK + K DV+ A Y +E R+ V
Sbjct: 21 LELLQRVQDTYAFETTSFLNPHQVSILKN----IGKQYDVQVFASSDYFPSELARVLVAP 76
Query: 141 HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFL 199
L D ++ L I+ F SH +G++L GI R GDI++ G++ AQ
Sbjct: 77 SYYQLNKDDFELSLLEISYASKFYKISHSQIMGTLLNQLGIERRTFGDILVVGDR-AQLF 135
Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
V L Y I + KV + V + E + + + + +SLR+D L ++ FKL
Sbjct: 136 VDKRLTQYFIDHVSKVAKMPVRLKEVSFAEQLKEQKQAVTREILASSLRLDKLVASTFKL 195
Query: 260 SRSKLVNLI 268
SRS+ LI
Sbjct: 196 SRSQAAQLI 204
>gi|392394894|ref|YP_006431496.1| hypothetical protein Desde_3421 [Desulfitobacterium dehalogenans
ATCC 51507]
gi|390525972|gb|AFM01703.1| hypothetical protein Desde_3421 [Desulfitobacterium dehalogenans
ATCC 51507]
Length = 265
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 94/197 (47%), Gaps = 8/197 (4%)
Query: 80 EVKHILEMARRASSRREVLHSDFLTPPV--LKESMMALEKLADVKAVAQGGYPQAERCRL 137
E H+L++ A + + + + FL + E ++ E LA +GG+P +ER R
Sbjct: 21 EGAHLLDLCNEALKKAKPVWTPFLGQALGNWLEGILRREGLA---FRPEGGFPDSERVRF 77
Query: 138 SVGHP-EALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
+G + L + P + L T H LGS++G G+ RE +GDI E
Sbjct: 78 LIGEDADVLDNIPSEIRTLRATPVDPRGKLEHRQVLGSLIGLGLKREVVGDIRFT-EHSC 136
Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
V +++D+L++ +K G + + +E + K + AS R+DA+AS+G
Sbjct: 137 LVAVAQDISDFLLSQWDKAGRERIRVEAVEG-DVEVSVEQGKERRITAASSRIDAVASSG 195
Query: 257 FKLSRSKLVNLIRYSSL 273
F +SR+ L LI+ +
Sbjct: 196 FNVSRTVLQELIQQGKV 212
>gi|227529017|ref|ZP_03959066.1| ribosomal protein S4e [Lactobacillus vaginalis ATCC 49540]
gi|227351029|gb|EEJ41320.1| ribosomal protein S4e [Lactobacillus vaginalis ATCC 49540]
Length = 261
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 12/166 (7%)
Query: 121 VKAVAQGGYPQAERCRL----SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSIL 176
VK + GG+ AE RL S P+A V L + F H +G++L
Sbjct: 58 VKLESFGGWQSAEMRRLLFFPSYYQPQAADF---AVTGLEVDYPQKFAELHHRQIMGTLL 114
Query: 177 GTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPR 236
G G+ R GDI+ G++ Q +V ++A ++ ++ VG + V + L L
Sbjct: 115 GEGLERASFGDIVTNGKRW-QVVVTNQMARFVRERIDHVGKIKVKWKPVQLEELIVPEDD 173
Query: 237 TKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSLASLVQISAK 282
+ T +SLR+DA+ +AGF SR++ L+ + LVQI+ +
Sbjct: 174 WEQLSTTVSSLRIDAIIAAGFNYSRNRAKQLLEH----GLVQINWE 215
>gi|423592106|ref|ZP_17568137.1| hypothetical protein IIG_00974 [Bacillus cereus VD048]
gi|401232239|gb|EJR38741.1| hypothetical protein IIG_00974 [Bacillus cereus VD048]
Length = 255
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 98/205 (47%), Gaps = 10/205 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE ++A+ +V +DFL P + M + + DV G P+AER R +
Sbjct: 15 VDKVLEW-KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVRFGGAMPEAERKRALI- 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ E AQ
Sbjct: 72 YPDYLELNEEEFQVEVLEIDYPSKFFTLEHRQILGAFMSLGLTREKCGDILLQ-EDRAQI 130
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
V E+ Y+ +L+ +G + V+ + I + + + +SLR+D L +
Sbjct: 131 AVAKEVVSYIEMNLQSIGKMKVTLSPIQVEKILRVGEKWGEKSGTVSSLRLDVLLAEMLH 190
Query: 259 LSRSKLVNLIRYSSLASLVQISAKA 283
+SR K+ LI+ LV+++ K
Sbjct: 191 ISRQKVQPLIK----GGLVKVNWKT 211
>gi|256846979|ref|ZP_05552425.1| RNA-binding S4 domain-containing protein [Lactobacillus
coleohominis 101-4-CHN]
gi|256715643|gb|EEU30618.1| RNA-binding S4 domain-containing protein [Lactobacillus
coleohominis 101-4-CHN]
Length = 261
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 85/180 (47%), Gaps = 5/180 (2%)
Query: 86 EMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL 145
++A A R VL ++FL P + + + + AD++ + GGYP AE R + +P+
Sbjct: 24 QIATAAGEYRPVL-TNFLNPRQIFIAETLVNREADLRFQSWGGYPDAEMQRFLI-YPDYY 81
Query: 146 TSDPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE 203
+ + N+ F H LG++LG+G+ R GD IL + Q V E
Sbjct: 82 QPNREDFQINYYQINYPTKFVELHHRQILGTLLGSGLTRGSFGD-ILNNDLVWQIAVSRE 140
Query: 204 LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 263
++ ++ LE++G ++V RI L + SLR+DA+ + F SR++
Sbjct: 141 VSQFVDQELERIGRINVQFERISQDKLVLPDDDWEKVSITVPSLRLDAVIANAFNYSRNR 200
>gi|422863097|ref|ZP_16909729.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK408]
gi|327473397|gb|EGF18817.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK408]
Length = 261
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 87/195 (44%), Gaps = 10/195 (5%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERC 135
E + LE+ +R + FL P +LK + K DV+ A Y +E
Sbjct: 15 EFIDRSLELFQRVQDTYAFETTSFLNPHQVSILKN----IGKQYDVQVFASSDYFPSELA 70
Query: 136 RLSVG-HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGE 193
R+ V L D ++ L I+ F SH +G++L GI R GDI++ G+
Sbjct: 71 RVLVAPSYYQLNMDDFELSLLEISYASKFYKISHSQIMGTLLNQLGIERRTFGDILVVGD 130
Query: 194 KGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALA 253
AQ V LA Y I + K+ + V + E + + + + +SLR+D L
Sbjct: 131 -CAQLFVDKRLAQYFIDHVSKIAKMPVKLKEVSFAEQLKEQKQAATREILASSLRLDKLV 189
Query: 254 SAGFKLSRSKLVNLI 268
++ FKLSRS+ LI
Sbjct: 190 ASTFKLSRSQAAQLI 204
>gi|188588620|ref|YP_001921580.1| S4 domain-containing protein [Clostridium botulinum E3 str. Alaska
E43]
gi|188498901|gb|ACD52037.1| S4 domain protein [Clostridium botulinum E3 str. Alaska E43]
Length = 254
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 97 VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS 156
V +DF +P K E ++ K +G + +ER +S + + P + L
Sbjct: 34 VFGNDFYSPKTWKWFKENCE-TSEFKVTCEGIFKDSERKMISFNN---IYDIPFPIKLLK 89
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE-LADYLITSLEKV 215
+ G F H DFLG IL GI R KIGD+I+ E +L + E + +L+++++K+
Sbjct: 90 VQGKSKFSNLEHKDFLGGILSLGIERNKIGDLIV--EDNVCYLPIHEDIFKFLLSNVDKI 147
Query: 216 GNVSVSCTRIPLLALEYEPPRTKSFK---TIEASLRVDALASAGFKLSRSKLVNLI 268
G S I E + P+ K FK + +SLR+D + S KLSRSK LI
Sbjct: 148 GRTPCSIAEI---QNEGDFPKIK-FKEDVILISSLRIDGIVSKISKLSRSKAQMLI 199
>gi|385826107|ref|YP_005862449.1| cell division protein [Lactobacillus johnsonii DPC 6026]
gi|329667551|gb|AEB93499.1| cell division protein [Lactobacillus johnsonii DPC 6026]
Length = 265
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 5/177 (2%)
Query: 94 RREVLHSDFLTPPVLKESMMALEKLADV-KAVAQGGYPQAERCR-LSVGHPEALTSDPDI 151
+ E + +DFL P +E + E + + + GG+ AE+ R L E D
Sbjct: 34 KNEPILTDFLNP---REQYIFREIVGGYAQLYSFGGFSNAEKKRMLLCDWSEGYKPDEFN 90
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
++ L I + +H LG + GI + GDII F + EL DY +
Sbjct: 91 ISLLEIAYPQKWSELTHSQILGVLTHLGIELDTFGDIINDENGNWLFFIKAELKDYFLEE 150
Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
++++G V + +PL + + ++ ++ SLR+DA+ SA LSRS++ +I
Sbjct: 151 IDRIGRTKVKLSELPLSKVLVQEDDSEEMTSVAISLRLDAVISAITNLSRSQVKKII 207
>gi|289435369|ref|YP_003465241.1| S4 domain-containing protein [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289171613|emb|CBH28159.1| S4 domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954]
Length = 258
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 91/205 (44%), Gaps = 8/205 (3%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ IL + R + +DFL P + + +K GG AER R +
Sbjct: 16 IDKILGITMRVENEYTPQLTDFLDPRQRYITETVIGGYDQIKVQFFGGVAHAERRRALI- 74
Query: 141 HPEALT-SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P+ T ++ D +A I F +H LG+++ G+ R+ GDI+ G + Q
Sbjct: 75 YPDYYTPTEVDFEIALFHIRYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGTE-WQL 133
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
LV + DYL LEK+G V+V L + P + +S+R+D + S
Sbjct: 134 LVESTMRDYLTLQLEKIGKVNVMLEETDLSEATFTPTVWEESGLTVSSMRLDVIISNAHH 193
Query: 259 LSRSKLVNLIRYSSLASLVQISAKA 283
+SR K L+ +A LV+++ K
Sbjct: 194 ISRQKAKQLV----VAGLVKVNWKT 214
>gi|229031529|ref|ZP_04187529.1| RNA-binding S4 domain protein [Bacillus cereus AH1271]
gi|228729818|gb|EEL80798.1| RNA-binding S4 domain protein [Bacillus cereus AH1271]
Length = 241
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 95/200 (47%), Gaps = 15/200 (7%)
Query: 89 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
+R + +V +DFL P + M + + DV G P AER R + +P+ L +
Sbjct: 8 KRVAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVSVQFDGATPHAERKRALI-YPDYLVVN 65
Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 206
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 66 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQIVVAKEVVS 124
Query: 207 YLITSLEKVGNVSVSCTRIPLLA---LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 263
Y+ +L+ +G VS + P+ L+ + + T+ +SLR+D + + +SR K
Sbjct: 125 YIEMNLQTIGKAKVSLS--PVQGEKILQMQETWGEKSGTV-SSLRLDVMLAEMLHISRQK 181
Query: 264 LVNLIRYSSLASLVQISAKA 283
+ I+ LV+++ K
Sbjct: 182 VQPFIK----NGLVKVNWKT 197
>gi|310659182|ref|YP_003936903.1| RNA binding protein [[Clostridium] sticklandii]
gi|308825960|emb|CBH21998.1| RNA binding protein [[Clostridium] sticklandii]
Length = 261
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 8/177 (4%)
Query: 96 EVLHSDFLTPPVLKESMMALEKLADV--KAVAQGGYPQAERCRLSVGH--PEALTSDPDI 151
++ ++DF+ P K + L+ L + + + P+ ++ + E+L DI
Sbjct: 34 DIRNTDFMNPFEKKNFISILKGLDSIGFRECSPSAMPERSIIQIFPEYIAEESLEKPYDI 93
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
+ I+GNF F SH D+LG++L GI REK+GDI + E A + ++ Y++ +
Sbjct: 94 I---KISGNFKFNKLSHRDYLGALLALGIKREKLGDIHVH-EACAYIIADKNVSHYIMFN 149
Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
L + S++ I E P + +S R DA+ S F LSR+K+ I
Sbjct: 150 LTSINKASITAKIIDEDDFEESIPNYQEKIITTSSRRADAVVSEIFNLSRAKIQEYI 206
>gi|229013082|ref|ZP_04170247.1| RNA-binding S4 domain protein [Bacillus mycoides DSM 2048]
gi|228748336|gb|EEL98196.1| RNA-binding S4 domain protein [Bacillus mycoides DSM 2048]
Length = 241
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 94/197 (47%), Gaps = 9/197 (4%)
Query: 89 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
++A+ +V +DFL P + M + + DV G P+AER R + +P+ L +
Sbjct: 8 KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVRFDGAMPEAERKRALI-YPDYLELN 65
Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 206
+ V L I F H LG+ + G+ REK GDI+LQ E AQ V E+
Sbjct: 66 EEEFQVEVLEIDYPSKFFTLEHRQILGAFMSLGLTREKCGDILLQ-EDRAQIAVAKEVVS 124
Query: 207 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 266
Y+ +L+ +G + V+ + I + + + +SLR+D L + +SR K+
Sbjct: 125 YIEMNLQSIGKMKVTLSPIQVEKILRVGEKWGEKSGTVSSLRLDVLLAEMLHISRQKVQP 184
Query: 267 LIRYSSLASLVQISAKA 283
LI+ LV+++ K
Sbjct: 185 LIK----GGLVKVNWKT 197
>gi|423470111|ref|ZP_17446855.1| hypothetical protein IEM_01417 [Bacillus cereus BAG6O-2]
gi|423558540|ref|ZP_17534842.1| hypothetical protein II3_03744 [Bacillus cereus MC67]
gi|401191808|gb|EJQ98830.1| hypothetical protein II3_03744 [Bacillus cereus MC67]
gi|402437363|gb|EJV69387.1| hypothetical protein IEM_01417 [Bacillus cereus BAG6O-2]
Length = 255
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 98/205 (47%), Gaps = 10/205 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V ++E ++A+ +V +DFL P + M + + DV G P+AER R +
Sbjct: 15 VDKVIEW-KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVRFDGAMPEAERKRALI- 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ E AQ
Sbjct: 72 YPDYLELNEEEFQVEVLEIDYPSKFFTLEHRQILGAFMSLGLTREKCGDILLQ-EDRAQI 130
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
V E+ Y+ +L+ +G + V+ + I + + + +SLR+D L +
Sbjct: 131 AVAKEVVSYIEMNLQSIGKMKVTLSPIQVEKVLRVGEKWGEKSGTVSSLRLDVLLAEMLH 190
Query: 259 LSRSKLVNLIRYSSLASLVQISAKA 283
+SR K+ LI+ LV+++ K
Sbjct: 191 ISRQKVQPLIK----GGLVKVNWKT 211
>gi|22536662|ref|NP_687513.1| hypothetical protein SAG0483 [Streptococcus agalactiae 2603V/R]
gi|22533501|gb|AAM99385.1|AE014213_24 ylmH protein [Streptococcus agalactiae 2603V/R]
Length = 262
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 92/194 (47%), Gaps = 9/194 (4%)
Query: 78 IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
I ++ H +A+ + + ++FL P K LE+ G Y Q E ++
Sbjct: 18 IHKIDH---LAQYVENTYSFITTEFLNPREFKILESVLERRGS-HYYTSGQYFQTEYVKV 73
Query: 138 SVGHPEALTSD-PDI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEK 194
+ PE D D ++ + I N F +H +G++L G+ R +GDI+++ E
Sbjct: 74 IIA-PEYYQLDMADFNLSLIEIKYNAKFNHLTHAKIMGTLLNYLGVKRSILGDILVE-EG 131
Query: 195 GAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALAS 254
AQ LV ++ ++L+ S+ K+G SV +PL L + I +SLR+D + +
Sbjct: 132 CAQVLVDSQMTNHLVHSVTKIGTASVQLAEVPLSKLLTPKQDIQKLTVIASSLRLDKILA 191
Query: 255 AGFKLSRSKLVNLI 268
K+SR++ LI
Sbjct: 192 TILKISRTQSTKLI 205
>gi|431765945|ref|ZP_19554444.1| S4 domain-containing protein [Enterococcus faecium E4215]
gi|430627388|gb|ELB63890.1| S4 domain-containing protein [Enterococcus faecium E4215]
Length = 260
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 92/178 (51%), Gaps = 18/178 (10%)
Query: 100 SDFLTPPVLKESMMALEKL----ADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVA 153
++FL P ++S + LE L +D++ + GGY QAER C + + E + D + A
Sbjct: 36 TEFLDP---RQSYI-LETLIRQSSDLRFMFYGGYEQAERKRCLIFPDYYEPVKEDFE-TA 90
Query: 154 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
I F SHG LG+++GTGI R GDII G++ Q + E+ ++ +
Sbjct: 91 LYEIHYPSKFASLSHGKILGTLVGTGIKRSYFGDIISDGDR-WQVFIANEVDHFVAAQVT 149
Query: 214 KVGNVSVSCTRIPLLALEYEPPR---TKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+G V+V P+ E P+ T+ T+ +S+R+D++ S + +SR + LI
Sbjct: 150 KIGKVAVRLE--PIKYTEMIMPKDSWTQERGTV-SSMRLDSVISEIYNISRQRSKQLI 204
>gi|196035794|ref|ZP_03103196.1| S4 domain protein [Bacillus cereus W]
gi|218905027|ref|YP_002452861.1| S4 domain-containing protein [Bacillus cereus AH820]
gi|195991443|gb|EDX55409.1| S4 domain protein [Bacillus cereus W]
gi|218535821|gb|ACK88219.1| S4 domain protein [Bacillus cereus AH820]
Length = 255
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 16/208 (7%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE ++A+ +V +DFL P + M + + D+ G +AER R +
Sbjct: 15 VDKVLEW-KQAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDIAVQFDGATSRAERKRALI- 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ E AQ
Sbjct: 72 YPDYLVVNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQI 130
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLA---LEYEPPRTKSFKTIEASLRVDALASA 255
+V E+ Y+ +L+ +G V VS + P+ L+ + + T+ +SLR+D + +
Sbjct: 131 VVAKEVVSYIEMNLQSIGKVKVSLS--PVQGEKILQIQETWGEKSGTV-SSLRLDVMLAE 187
Query: 256 GFKLSRSKLVNLIRYSSLASLVQISAKA 283
+SR K+ LI+ LV+++ K
Sbjct: 188 MLHISRQKVQPLIK----NGLVKVNWKT 211
>gi|69244706|ref|ZP_00602970.1| RNA-binding S4 [Enterococcus faecium DO]
gi|257879374|ref|ZP_05659027.1| RNA binding protein S4 [Enterococcus faecium 1,230,933]
gi|257881760|ref|ZP_05661413.1| RNA binding protein S4 [Enterococcus faecium 1,231,502]
gi|257885186|ref|ZP_05664839.1| RNA binding protein S4 [Enterococcus faecium 1,231,501]
gi|257890200|ref|ZP_05669853.1| RNA binding protein S4 [Enterococcus faecium 1,231,410]
gi|257893528|ref|ZP_05673181.1| RNA binding protein S4 [Enterococcus faecium 1,231,408]
gi|260558816|ref|ZP_05831005.1| RNA binding protein S4 [Enterococcus faecium C68]
gi|293553193|ref|ZP_06673830.1| S4 domain protein [Enterococcus faecium E1039]
gi|293560466|ref|ZP_06676958.1| S4 domain protein [Enterococcus faecium E1162]
gi|293568292|ref|ZP_06679616.1| S4 domain protein [Enterococcus faecium E1071]
gi|294621611|ref|ZP_06700776.1| S4 domain protein [Enterococcus faecium U0317]
gi|314937863|ref|ZP_07845179.1| S4 domain protein [Enterococcus faecium TX0133a04]
gi|314941354|ref|ZP_07848247.1| S4 domain protein [Enterococcus faecium TX0133C]
gi|314950113|ref|ZP_07853399.1| S4 domain protein [Enterococcus faecium TX0082]
gi|314951346|ref|ZP_07854400.1| S4 domain protein [Enterococcus faecium TX0133A]
gi|314992823|ref|ZP_07858224.1| S4 domain protein [Enterococcus faecium TX0133B]
gi|314997983|ref|ZP_07862878.1| S4 domain protein [Enterococcus faecium TX0133a01]
gi|383328093|ref|YP_005353977.1| S4 domain-containing protein [Enterococcus faecium Aus0004]
gi|389867983|ref|YP_006375406.1| 30S ribosomal protein S4e [Enterococcus faecium DO]
gi|406580474|ref|ZP_11055667.1| S4 domain-containing protein [Enterococcus sp. GMD4E]
gi|406582691|ref|ZP_11057789.1| S4 domain-containing protein [Enterococcus sp. GMD3E]
gi|406584966|ref|ZP_11059962.1| S4 domain-containing protein [Enterococcus sp. GMD2E]
gi|406590349|ref|ZP_11064718.1| S4 domain-containing protein [Enterococcus sp. GMD1E]
gi|410937026|ref|ZP_11368888.1| 30S ribosomal protein S4e [Enterococcus sp. GMD5E]
gi|415898393|ref|ZP_11551278.1| S4 domain protein [Enterococcus faecium E4453]
gi|416130928|ref|ZP_11597591.1| S4 domain protein [Enterococcus faecium E4452]
gi|424789435|ref|ZP_18216089.1| S4 domain protein [Enterococcus faecium V689]
gi|424809970|ref|ZP_18235338.1| S4 domain protein [Enterococcus faecium S447]
gi|424826042|ref|ZP_18250983.1| S4 domain protein [Enterococcus faecium R501]
gi|424859457|ref|ZP_18283465.1| S4 domain protein [Enterococcus faecium R499]
gi|424901153|ref|ZP_18324690.1| S4 domain protein [Enterococcus faecium R497]
gi|424951728|ref|ZP_18366796.1| S4 domain protein [Enterococcus faecium R496]
gi|424955098|ref|ZP_18369958.1| S4 domain protein [Enterococcus faecium R494]
gi|424958662|ref|ZP_18373298.1| S4 domain protein [Enterococcus faecium R446]
gi|424959601|ref|ZP_18374179.1| S4 domain protein [Enterococcus faecium P1986]
gi|424964062|ref|ZP_18378203.1| S4 domain protein [Enterococcus faecium P1190]
gi|424969217|ref|ZP_18382800.1| S4 domain protein [Enterococcus faecium P1140]
gi|424971987|ref|ZP_18385384.1| S4 domain protein [Enterococcus faecium P1139]
gi|424973331|ref|ZP_18386619.1| S4 domain protein [Enterococcus faecium P1137]
gi|424977779|ref|ZP_18390764.1| S4 domain protein [Enterococcus faecium P1123]
gi|424982082|ref|ZP_18394765.1| S4 domain protein [Enterococcus faecium ERV99]
gi|424985815|ref|ZP_18398275.1| S4 domain protein [Enterococcus faecium ERV69]
gi|424988378|ref|ZP_18400700.1| S4 domain protein [Enterococcus faecium ERV38]
gi|424990629|ref|ZP_18402835.1| S4 domain protein [Enterococcus faecium ERV26]
gi|424994834|ref|ZP_18406753.1| S4 domain protein [Enterococcus faecium ERV168]
gi|424998820|ref|ZP_18410483.1| S4 domain protein [Enterococcus faecium ERV165]
gi|425002663|ref|ZP_18414083.1| S4 domain protein [Enterococcus faecium ERV161]
gi|425004807|ref|ZP_18416092.1| S4 domain protein [Enterococcus faecium ERV102]
gi|425007879|ref|ZP_18418994.1| S4 domain protein [Enterococcus faecium ERV1]
gi|425009763|ref|ZP_18420757.1| S4 domain protein [Enterococcus faecium E422]
gi|425014536|ref|ZP_18425210.1| S4 domain protein [Enterococcus faecium E417]
gi|425019156|ref|ZP_18429542.1| S4 domain protein [Enterococcus faecium C621]
gi|425019565|ref|ZP_18429913.1| S4 domain protein [Enterococcus faecium C497]
gi|425023876|ref|ZP_18433971.1| S4 domain protein [Enterococcus faecium C1904]
gi|425031128|ref|ZP_18436271.1| S4 domain protein [Enterococcus faecium 515]
gi|425036628|ref|ZP_18441370.1| S4 domain protein [Enterococcus faecium 514]
gi|425039755|ref|ZP_18444259.1| S4 domain protein [Enterococcus faecium 513]
gi|425043084|ref|ZP_18447353.1| S4 domain protein [Enterococcus faecium 511]
gi|425046437|ref|ZP_18450453.1| S4 domain protein [Enterococcus faecium 510]
gi|425048714|ref|ZP_18452605.1| S4 domain protein [Enterococcus faecium 509]
gi|425052483|ref|ZP_18456088.1| S4 domain protein [Enterococcus faecium 506]
gi|425061064|ref|ZP_18464329.1| S4 domain protein [Enterococcus faecium 503]
gi|427395406|ref|ZP_18888328.1| hypothetical protein HMPREF9307_00504 [Enterococcus durans
FB129-CNAB-4]
gi|430821334|ref|ZP_19439945.1| S4 domain-containing protein [Enterococcus faecium E0045]
gi|430824069|ref|ZP_19442636.1| S4 domain-containing protein [Enterococcus faecium E0120]
gi|430829505|ref|ZP_19447598.1| S4 domain-containing protein [Enterococcus faecium E0269]
gi|430831540|ref|ZP_19449591.1| S4 domain-containing protein [Enterococcus faecium E0333]
gi|430833721|ref|ZP_19451732.1| S4 domain-containing protein [Enterococcus faecium E0679]
gi|430837031|ref|ZP_19455007.1| S4 domain-containing protein [Enterococcus faecium E0680]
gi|430839109|ref|ZP_19457051.1| S4 domain-containing protein [Enterococcus faecium E0688]
gi|430844773|ref|ZP_19462670.1| S4 domain-containing protein [Enterococcus faecium E1050]
gi|430846891|ref|ZP_19464745.1| S4 domain-containing protein [Enterococcus faecium E1133]
gi|430853479|ref|ZP_19471207.1| S4 domain-containing protein [Enterococcus faecium E1258]
gi|430856778|ref|ZP_19474462.1| S4 domain-containing protein [Enterococcus faecium E1392]
gi|430859680|ref|ZP_19477289.1| S4 domain-containing protein [Enterococcus faecium E1552]
gi|430862432|ref|ZP_19479749.1| S4 domain-containing protein [Enterococcus faecium E1573]
gi|430867382|ref|ZP_19482376.1| S4 domain-containing protein [Enterococcus faecium E1574]
gi|430869880|ref|ZP_19483035.1| S4 domain-containing protein [Enterococcus faecium E1575]
gi|430963172|ref|ZP_19487464.1| S4 domain-containing protein [Enterococcus faecium E1576]
gi|431011090|ref|ZP_19489834.1| S4 domain-containing protein [Enterococcus faecium E1578]
gi|431237083|ref|ZP_19503226.1| S4 domain-containing protein [Enterococcus faecium E1622]
gi|431264018|ref|ZP_19505906.1| S4 domain-containing protein [Enterococcus faecium E1623]
gi|431290540|ref|ZP_19506675.1| S4 domain-containing protein [Enterococcus faecium E1626]
gi|431382762|ref|ZP_19511355.1| S4 domain-containing protein [Enterococcus faecium E1627]
gi|431523808|ref|ZP_19516833.1| S4 domain-containing protein [Enterococcus faecium E1634]
gi|431536449|ref|ZP_19517409.1| S4 domain-containing protein [Enterococcus faecium E1731]
gi|431743241|ref|ZP_19532121.1| S4 domain-containing protein [Enterococcus faecium E2071]
gi|431745479|ref|ZP_19534323.1| S4 domain-containing protein [Enterococcus faecium E2134]
gi|431747873|ref|ZP_19536637.1| S4 domain-containing protein [Enterococcus faecium E2297]
gi|431754100|ref|ZP_19542765.1| S4 domain-containing protein [Enterococcus faecium E2883]
gi|431768786|ref|ZP_19557219.1| S4 domain-containing protein [Enterococcus faecium E1321]
gi|431770078|ref|ZP_19558481.1| S4 domain-containing protein [Enterococcus faecium E1644]
gi|431774394|ref|ZP_19562702.1| S4 domain-containing protein [Enterococcus faecium E2369]
gi|431777051|ref|ZP_19565308.1| S4 domain-containing protein [Enterococcus faecium E2560]
gi|431781358|ref|ZP_19569506.1| S4 domain-containing protein [Enterococcus faecium E6012]
gi|431784989|ref|ZP_19573024.1| S4 domain-containing protein [Enterococcus faecium E6045]
gi|447913352|ref|YP_007394764.1| hypothetical protein M7W_2098 [Enterococcus faecium NRRL B-2354]
gi|68196297|gb|EAN10726.1| RNA-binding S4 [Enterococcus faecium DO]
gi|257813602|gb|EEV42360.1| RNA binding protein S4 [Enterococcus faecium 1,230,933]
gi|257817418|gb|EEV44746.1| RNA binding protein S4 [Enterococcus faecium 1,231,502]
gi|257821038|gb|EEV48172.1| RNA binding protein S4 [Enterococcus faecium 1,231,501]
gi|257826560|gb|EEV53186.1| RNA binding protein S4 [Enterococcus faecium 1,231,410]
gi|257829907|gb|EEV56514.1| RNA binding protein S4 [Enterococcus faecium 1,231,408]
gi|260075275|gb|EEW63588.1| RNA binding protein S4 [Enterococcus faecium C68]
gi|291589004|gb|EFF20828.1| S4 domain protein [Enterococcus faecium E1071]
gi|291598776|gb|EFF29828.1| S4 domain protein [Enterococcus faecium U0317]
gi|291602603|gb|EFF32818.1| S4 domain protein [Enterococcus faecium E1039]
gi|291605614|gb|EFF35056.1| S4 domain protein [Enterococcus faecium E1162]
gi|313587995|gb|EFR66840.1| S4 domain protein [Enterococcus faecium TX0133a01]
gi|313592627|gb|EFR71472.1| S4 domain protein [Enterococcus faecium TX0133B]
gi|313596563|gb|EFR75408.1| S4 domain protein [Enterococcus faecium TX0133A]
gi|313599777|gb|EFR78620.1| S4 domain protein [Enterococcus faecium TX0133C]
gi|313642721|gb|EFS07301.1| S4 domain protein [Enterococcus faecium TX0133a04]
gi|313643554|gb|EFS08134.1| S4 domain protein [Enterococcus faecium TX0082]
gi|364090061|gb|EHM32692.1| S4 domain protein [Enterococcus faecium E4453]
gi|364093803|gb|EHM36039.1| S4 domain protein [Enterococcus faecium E4452]
gi|378937787|gb|AFC62859.1| S4 domain protein [Enterococcus faecium Aus0004]
gi|388533232|gb|AFK58424.1| ribosomal protein S4e [Enterococcus faecium DO]
gi|402918203|gb|EJX38917.1| S4 domain protein [Enterococcus faecium S447]
gi|402922115|gb|EJX42520.1| S4 domain protein [Enterococcus faecium V689]
gi|402924711|gb|EJX44903.1| S4 domain protein [Enterococcus faecium R501]
gi|402926489|gb|EJX46525.1| S4 domain protein [Enterococcus faecium R499]
gi|402928949|gb|EJX48755.1| S4 domain protein [Enterococcus faecium R496]
gi|402931322|gb|EJX50908.1| S4 domain protein [Enterococcus faecium R497]
gi|402934985|gb|EJX54278.1| S4 domain protein [Enterococcus faecium R494]
gi|402939559|gb|EJX58464.1| S4 domain protein [Enterococcus faecium R446]
gi|402947476|gb|EJX65684.1| S4 domain protein [Enterococcus faecium P1190]
gi|402949173|gb|EJX67254.1| S4 domain protein [Enterococcus faecium P1140]
gi|402950115|gb|EJX68130.1| S4 domain protein [Enterococcus faecium P1986]
gi|402956926|gb|EJX74349.1| S4 domain protein [Enterococcus faecium P1139]
gi|402958967|gb|EJX76248.1| S4 domain protein [Enterococcus faecium P1137]
gi|402961838|gb|EJX78833.1| S4 domain protein [Enterococcus faecium ERV99]
gi|402964521|gb|EJX81295.1| S4 domain protein [Enterococcus faecium P1123]
gi|402965066|gb|EJX81804.1| S4 domain protein [Enterococcus faecium ERV69]
gi|402972077|gb|EJX88302.1| S4 domain protein [Enterococcus faecium ERV38]
gi|402978932|gb|EJX94633.1| S4 domain protein [Enterococcus faecium ERV168]
gi|402979117|gb|EJX94804.1| S4 domain protein [Enterococcus faecium ERV26]
gi|402981857|gb|EJX97364.1| S4 domain protein [Enterococcus faecium ERV165]
gi|402982846|gb|EJX98283.1| S4 domain protein [Enterococcus faecium ERV161]
gi|402988452|gb|EJY03459.1| S4 domain protein [Enterococcus faecium ERV102]
gi|402994304|gb|EJY08847.1| S4 domain protein [Enterococcus faecium ERV1]
gi|402998603|gb|EJY12852.1| S4 domain protein [Enterococcus faecium E417]
gi|402999201|gb|EJY13403.1| S4 domain protein [Enterococcus faecium C621]
gi|403002017|gb|EJY16030.1| S4 domain protein [Enterococcus faecium E422]
gi|403008484|gb|EJY21988.1| S4 domain protein [Enterococcus faecium C1904]
gi|403011116|gb|EJY24445.1| S4 domain protein [Enterococcus faecium C497]
gi|403014169|gb|EJY27187.1| S4 domain protein [Enterococcus faecium 514]
gi|403014741|gb|EJY27711.1| S4 domain protein [Enterococcus faecium 513]
gi|403016297|gb|EJY29121.1| S4 domain protein [Enterococcus faecium 515]
gi|403021323|gb|EJY33790.1| S4 domain protein [Enterococcus faecium 511]
gi|403024300|gb|EJY36470.1| S4 domain protein [Enterococcus faecium 510]
gi|403030029|gb|EJY41749.1| S4 domain protein [Enterococcus faecium 509]
gi|403034275|gb|EJY45738.1| S4 domain protein [Enterococcus faecium 506]
gi|403042001|gb|EJY52977.1| S4 domain protein [Enterococcus faecium 503]
gi|404453851|gb|EKA00883.1| S4 domain-containing protein [Enterococcus sp. GMD4E]
gi|404457681|gb|EKA04211.1| S4 domain-containing protein [Enterococcus sp. GMD3E]
gi|404463185|gb|EKA08881.1| S4 domain-containing protein [Enterococcus sp. GMD2E]
gi|404469418|gb|EKA14224.1| S4 domain-containing protein [Enterococcus sp. GMD1E]
gi|410734619|gb|EKQ76538.1| 30S ribosomal protein S4e [Enterococcus sp. GMD5E]
gi|425723906|gb|EKU86792.1| hypothetical protein HMPREF9307_00504 [Enterococcus durans
FB129-CNAB-4]
gi|430438597|gb|ELA49014.1| S4 domain-containing protein [Enterococcus faecium E0045]
gi|430441453|gb|ELA51550.1| S4 domain-containing protein [Enterococcus faecium E0120]
gi|430480944|gb|ELA58115.1| S4 domain-containing protein [Enterococcus faecium E0269]
gi|430481423|gb|ELA58579.1| S4 domain-containing protein [Enterococcus faecium E0333]
gi|430486126|gb|ELA62994.1| S4 domain-containing protein [Enterococcus faecium E0679]
gi|430487812|gb|ELA64520.1| S4 domain-containing protein [Enterococcus faecium E0680]
gi|430491106|gb|ELA67588.1| S4 domain-containing protein [Enterococcus faecium E0688]
gi|430496204|gb|ELA72309.1| S4 domain-containing protein [Enterococcus faecium E1050]
gi|430538445|gb|ELA78737.1| S4 domain-containing protein [Enterococcus faecium E1133]
gi|430540560|gb|ELA80762.1| S4 domain-containing protein [Enterococcus faecium E1258]
gi|430543217|gb|ELA83292.1| S4 domain-containing protein [Enterococcus faecium E1552]
gi|430543891|gb|ELA83943.1| S4 domain-containing protein [Enterococcus faecium E1392]
gi|430549010|gb|ELA88857.1| S4 domain-containing protein [Enterococcus faecium E1573]
gi|430550393|gb|ELA90189.1| S4 domain-containing protein [Enterococcus faecium E1574]
gi|430555597|gb|ELA95134.1| S4 domain-containing protein [Enterococcus faecium E1576]
gi|430559257|gb|ELA98616.1| S4 domain-containing protein [Enterococcus faecium E1575]
gi|430560112|gb|ELA99418.1| S4 domain-containing protein [Enterococcus faecium E1578]
gi|430572647|gb|ELB11497.1| S4 domain-containing protein [Enterococcus faecium E1622]
gi|430576454|gb|ELB15105.1| S4 domain-containing protein [Enterococcus faecium E1623]
gi|430581133|gb|ELB19580.1| S4 domain-containing protein [Enterococcus faecium E1627]
gi|430582640|gb|ELB21062.1| S4 domain-containing protein [Enterococcus faecium E1626]
gi|430584766|gb|ELB23080.1| S4 domain-containing protein [Enterococcus faecium E1634]
gi|430594936|gb|ELB32888.1| S4 domain-containing protein [Enterococcus faecium E1731]
gi|430607075|gb|ELB44403.1| S4 domain-containing protein [Enterococcus faecium E2071]
gi|430610235|gb|ELB47387.1| S4 domain-containing protein [Enterococcus faecium E2134]
gi|430614749|gb|ELB51720.1| S4 domain-containing protein [Enterococcus faecium E2297]
gi|430620023|gb|ELB56826.1| S4 domain-containing protein [Enterococcus faecium E2883]
gi|430628654|gb|ELB65088.1| S4 domain-containing protein [Enterococcus faecium E1321]
gi|430634143|gb|ELB70278.1| S4 domain-containing protein [Enterococcus faecium E2369]
gi|430635831|gb|ELB71910.1| S4 domain-containing protein [Enterococcus faecium E1644]
gi|430639992|gb|ELB75846.1| S4 domain-containing protein [Enterococcus faecium E2560]
gi|430648545|gb|ELB83951.1| S4 domain-containing protein [Enterococcus faecium E6045]
gi|430649719|gb|ELB85087.1| S4 domain-containing protein [Enterococcus faecium E6012]
gi|445189061|gb|AGE30703.1| hypothetical protein M7W_2098 [Enterococcus faecium NRRL B-2354]
Length = 260
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 92/178 (51%), Gaps = 18/178 (10%)
Query: 100 SDFLTPPVLKESMMALEKL----ADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVA 153
++FL P ++S + LE L +D++ + GGY QAER C + + E + D + A
Sbjct: 36 TEFLDP---RQSYI-LETLIRQSSDLRFMFYGGYEQAERKRCLIFPDYYEPVEEDFE-TA 90
Query: 154 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
I F SHG LG+++GTGI R GDII G++ Q + E+ ++ +
Sbjct: 91 LYEIHYPSKFASLSHGKILGTLVGTGIKRSYFGDIISDGDR-WQVFIANEVDHFVAAQVT 149
Query: 214 KVGNVSVSCTRIPLLALEYEPPR---TKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+G V+V P+ E P+ T+ T+ +S+R+D++ S + +SR + LI
Sbjct: 150 KIGKVAVRLE--PIKYTEMIMPKDSWTQERGTV-SSMRLDSVISEIYNISRQRSKQLI 204
>gi|425058743|ref|ZP_18462119.1| S4 domain protein [Enterococcus faecium 504]
gi|431446024|ref|ZP_19513706.1| S4 domain-containing protein [Enterococcus faecium E1630]
gi|431760585|ref|ZP_19549182.1| S4 domain-containing protein [Enterococcus faecium E3346]
gi|403037598|gb|EJY48863.1| S4 domain protein [Enterococcus faecium 504]
gi|430585668|gb|ELB23940.1| S4 domain-containing protein [Enterococcus faecium E1630]
gi|430623670|gb|ELB60348.1| S4 domain-containing protein [Enterococcus faecium E3346]
Length = 260
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 92/178 (51%), Gaps = 18/178 (10%)
Query: 100 SDFLTPPVLKESMMALEKL----ADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVA 153
++FL P ++S + LE L +D++ + GGY QAER C + + E + D + A
Sbjct: 36 TEFLDP---RQSYI-LETLIRQSSDLRFMFYGGYKQAERKRCLIFPDYYEPVEEDFE-TA 90
Query: 154 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
I F SHG LG+++GTGI R GDII G++ Q + E+ ++ +
Sbjct: 91 LYEIHYPSKFASLSHGKILGTLVGTGIKRSYFGDIISDGDR-WQVFIANEVDHFVAAQVT 149
Query: 214 KVGNVSVSCTRIPLLALEYEPPR---TKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+G V+V P+ E P+ T+ T+ +S+R+D++ S + +SR + LI
Sbjct: 150 KIGKVAVRLE--PIKYTEMIMPKDSWTQERGTV-SSMRLDSVISEIYNISRQRSKQLI 204
>gi|431779317|ref|ZP_19567512.1| S4 domain-containing protein [Enterococcus faecium E4389]
gi|430642172|gb|ELB77953.1| S4 domain-containing protein [Enterococcus faecium E4389]
Length = 260
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 92/178 (51%), Gaps = 18/178 (10%)
Query: 100 SDFLTPPVLKESMMALEKL----ADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVA 153
++FL P ++S + LE L +D++ + GGY QAER C + + E + D + A
Sbjct: 36 TEFLDP---RQSYI-LETLIRQSSDLRFMFYGGYEQAERKRCLIFPDYYEPVEEDFE-TA 90
Query: 154 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
I F SHG LG+++GTGI R GDII G++ Q + E+ ++ +
Sbjct: 91 LYEIHYPSKFASLSHGKILGTLVGTGIQRSYFGDIISDGDR-WQVFIANEVDHFVAAQVT 149
Query: 214 KVGNVSVSCTRIPLLALEYEPPR---TKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+G V+V P+ E P+ T+ T+ +S+R+D++ S + +SR + LI
Sbjct: 150 KIGKVAVRLE--PIKYTEMIMPKDSWTQERGTV-SSMRLDSVISEIYNISRQRSKQLI 204
>gi|77411416|ref|ZP_00787762.1| ylmH protein [Streptococcus agalactiae CJB111]
gi|77162502|gb|EAO73467.1| ylmH protein [Streptococcus agalactiae CJB111]
Length = 262
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 91/194 (46%), Gaps = 9/194 (4%)
Query: 78 IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
I ++ H +A+ + + ++FL P K LE+ G Y Q E ++
Sbjct: 18 IHKIDH---LAQYVENTYSFITTEFLNPREFKILESVLERRGS-HYYTSGQYFQTEYVKV 73
Query: 138 SVGHPEALTSD-PDI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEK 194
+ PE D D ++ + I N F +H +G++L G+ R +GDI+++ E
Sbjct: 74 IIA-PEYYQLDMVDFNLSLIEIKYNAKFNHLTHAKIMGTLLNYLGVKRSILGDILVE-EG 131
Query: 195 GAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALAS 254
AQ LV ++ ++LI S+ K+G SV +PL L + I +SLR+D + +
Sbjct: 132 YAQVLVDSQMTNHLIHSVTKIGTASVQLAEVPLSKLLTPKQDIQKLTVIASSLRLDKILA 191
Query: 255 AGFKLSRSKLVNLI 268
K+SR + LI
Sbjct: 192 TILKISRKQSTKLI 205
>gi|329769776|ref|ZP_08261177.1| hypothetical protein HMPREF0433_00941 [Gemella sanguinis M325]
gi|328838138|gb|EGF87756.1| hypothetical protein HMPREF0433_00941 [Gemella sanguinis M325]
Length = 256
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 3/154 (1%)
Query: 111 SMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGD 170
S +A D K GGY +ER + + E D DIV L N F H +
Sbjct: 47 SKVAAYNYPDYKVDFFGGYEGSERKKAKIISNEYYDIDYDIVC-LKANYNNKFNKIEHRN 105
Query: 171 FLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLAL 230
LG++ GI ++GDI++ E V E+AD++ L K+G V++ + L +
Sbjct: 106 VLGTVHNLGINFNRVGDIVV-SESSIYIFVDREIADFIKMELTKIGRVNLEFKEVSELDI 164
Query: 231 EYEPPRTKSFKTIEASLRVDALASAGFKLSRSKL 264
+ + + F+ + +S R+D++ + SRSK+
Sbjct: 165 DI-KKQFQDFEIVTSSFRIDSIVAKITNKSRSKI 197
>gi|422858980|ref|ZP_16905630.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK1057]
gi|327458760|gb|EGF05108.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK1057]
Length = 261
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 73/154 (47%), Gaps = 3/154 (1%)
Query: 117 KLADVKAVAQGGYPQAERCRLSVG-HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSI 175
K DV+ A Y +E R+ V L D ++ L I+ F SH +G++
Sbjct: 52 KQYDVQVFASSDYFPSELARVLVAPSYYQLNMDDFELSLLEISYASKFYKISHSQIMGTL 111
Query: 176 LGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEP 234
L GI R GDI++ G++ AQ V LA Y I + KV + V + E
Sbjct: 112 LNQLGIERRTFGDILVVGDR-AQLFVDKRLAQYFIDHVTKVAKMPVKLKEVSFEEQLKEQ 170
Query: 235 PRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+ + + + +SLR+D L ++ FKLSRS+ LI
Sbjct: 171 KQAVTREILASSLRLDKLVASTFKLSRSQAAQLI 204
>gi|300854254|ref|YP_003779238.1| RNA-binding protein [Clostridium ljungdahlii DSM 13528]
gi|300434369|gb|ADK14136.1| putative RNA binding protein [Clostridium ljungdahlii DSM 13528]
Length = 257
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 95/196 (48%), Gaps = 6/196 (3%)
Query: 74 DKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAE 133
D++ I + + +A++ ++ V S F TP V ++ L+K + + G + AE
Sbjct: 14 DESEILPIYDKISLAKKTNN--TVYTSTFYTPNVW-NTLENLKKEIGLNICSCGIFEDAE 70
Query: 134 RCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGE 193
R +L + + P + + I F H D+LG+++ G+ REK GD+IL+ +
Sbjct: 71 R-KLIAFSKFDIRNYP--IKLMEIKCKSKFVKLQHKDYLGALMALGLKREKFGDLILKED 127
Query: 194 KGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALA 253
K V +++DY+ +L VG S + + + E K+ +SLR+D L
Sbjct: 128 KQCYLAVCEDVSDYIEMNLNSVGKSSCKANVLDISSAEIPLYNFKTSVLNVSSLRIDCLV 187
Query: 254 SAGFKLSRSKLVNLIR 269
S+ +SR+K +I+
Sbjct: 188 SSLCNVSRNKSQEMIK 203
>gi|16804067|ref|NP_465552.1| hypothetical protein lmo2028 [Listeria monocytogenes EGD-e]
gi|254827084|ref|ZP_05231771.1| S4 domain-containing protein [Listeria monocytogenes FSL N3-165]
gi|255016669|ref|ZP_05288795.1| hypothetical protein LmonF_00281 [Listeria monocytogenes FSL
F2-515]
gi|255026556|ref|ZP_05298542.1| hypothetical protein LmonocytFSL_09855 [Listeria monocytogenes FSL
J2-003]
gi|386044335|ref|YP_005963140.1| hypothetical protein [Listeria monocytogenes 10403S]
gi|386051003|ref|YP_005968994.1| S4 domain-containing protein [Listeria monocytogenes FSL R2-561]
gi|16411498|emb|CAD00106.1| lmo2028 [Listeria monocytogenes EGD-e]
gi|258599467|gb|EEW12792.1| S4 domain-containing protein [Listeria monocytogenes FSL N3-165]
gi|345537569|gb|AEO07009.1| hypothetical protein LMRG_01177 [Listeria monocytogenes 10403S]
gi|346424849|gb|AEO26374.1| S4 domain-containing protein [Listeria monocytogenes FSL R2-561]
Length = 258
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 84/186 (45%), Gaps = 8/186 (4%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 157
+DFL P + + ++ GG AER R + +P+ T ++ D +A I
Sbjct: 35 TDFLDPRQRFITETVIGGYDEINVQFFGGVAHAERRRALI-YPDYYTPTEADFEIALFHI 93
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
F +H LG+++ G+ R+ GDI+ G + Q LV + DYL LEK+G
Sbjct: 94 RYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGTE-WQLLVESTMKDYLTLQLEKIGK 152
Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSLASLV 277
V+V L Y P + +S+R+D + S +SR K L+ A LV
Sbjct: 153 VNVMLEETELTNAVYAPVIWEEMGLTVSSMRLDVIISNAHHISRQKAKQLV----TAGLV 208
Query: 278 QISAKA 283
+++ K
Sbjct: 209 KVNWKT 214
>gi|25010599|ref|NP_734994.1| hypothetical protein gbs0530 [Streptococcus agalactiae NEM316]
gi|77408402|ref|ZP_00785142.1| ylmH protein [Streptococcus agalactiae COH1]
gi|77414693|ref|ZP_00790826.1| ylmH protein [Streptococcus agalactiae 515]
gi|421147589|ref|ZP_15607274.1| hypothetical protein GB112_06934 [Streptococcus agalactiae GB00112]
gi|23094952|emb|CAD46174.1| Unknown [Streptococcus agalactiae NEM316]
gi|77159253|gb|EAO70431.1| ylmH protein [Streptococcus agalactiae 515]
gi|77173005|gb|EAO76134.1| ylmH protein [Streptococcus agalactiae COH1]
gi|401685709|gb|EJS81704.1| hypothetical protein GB112_06934 [Streptococcus agalactiae GB00112]
Length = 262
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 6/191 (3%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ I +A+ + + ++FL P K LE+ G Y Q E ++ +
Sbjct: 18 INKIDHLAQYVENTYSFITTEFLNPREFKILESVLERRGS-HYYTSGQYFQTEYVKVIIA 76
Query: 141 HPEALTSD-PDI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQ 197
PE D D ++ + I N F +H +G++L G+ R +GDI+++ E AQ
Sbjct: 77 -PEYYQLDMVDFNLSLIEIKYNAKFNHLTHAKIMGTLLNYLGVKRSILGDILVE-EGCAQ 134
Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
LV ++ ++L+ S+ K+G SV +PL L + I +SLR+D + +
Sbjct: 135 VLVDSQMTNHLVHSVTKIGTASVQLAEVPLSKLLTPKQDIQKLTVIASSLRLDKILATIL 194
Query: 258 KLSRSKLVNLI 268
K+SR++ LI
Sbjct: 195 KISRTQSTKLI 205
>gi|347549424|ref|YP_004855752.1| hypothetical protein LIV_2007 [Listeria ivanovii subsp. ivanovii
PAM 55]
gi|346982495|emb|CBW86493.1| Putative unknown protein [Listeria ivanovii subsp. ivanovii PAM 55]
Length = 258
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 85/186 (45%), Gaps = 8/186 (4%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 157
+DFL P + + +K GG AER R + +P+ T ++ D +A I
Sbjct: 35 TDFLDPRQRYITETIIGGYDQIKVQFFGGVAHAERRRALI-YPDYYTPTEADFEIALFHI 93
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
F +H LG+++ G+ R+ GDI+ G + Q LV + DYL LEK+G
Sbjct: 94 RYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGSE-WQLLVESTMKDYLTLQLEKIGK 152
Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSLASLV 277
++V L + P + +S+R+D + S +SR K L+ +A LV
Sbjct: 153 INVMLEETDLSEAVFTPTIWEEMGLTVSSMRLDVIISNAHHISRQKAKQLV----VAGLV 208
Query: 278 QISAKA 283
+++ K
Sbjct: 209 KVNWKT 214
>gi|284802475|ref|YP_003414340.1| hypothetical protein LM5578_2231 [Listeria monocytogenes 08-5578]
gi|284995617|ref|YP_003417385.1| hypothetical protein LM5923_2182 [Listeria monocytogenes 08-5923]
gi|404284525|ref|YP_006685422.1| RNA-binding S4 domain-containing protein [Listeria monocytogenes
SLCC2372]
gi|404411329|ref|YP_006696917.1| RNA-binding S4 domain-containing protein [Listeria monocytogenes
SLCC5850]
gi|404414106|ref|YP_006699693.1| RNA-binding S4 domain-containing protein [Listeria monocytogenes
SLCC7179]
gi|405759079|ref|YP_006688355.1| RNA-binding S4 domain-containing protein [Listeria monocytogenes
SLCC2479]
gi|284058037|gb|ADB68978.1| hypothetical protein LM5578_2231 [Listeria monocytogenes 08-5578]
gi|284061084|gb|ADB72023.1| hypothetical protein LM5923_2182 [Listeria monocytogenes 08-5923]
gi|404231155|emb|CBY52559.1| RNA-binding S4 domain protein [Listeria monocytogenes SLCC5850]
gi|404234027|emb|CBY55430.1| RNA-binding S4 domain protein [Listeria monocytogenes SLCC2372]
gi|404236961|emb|CBY58363.1| RNA-binding S4 domain protein [Listeria monocytogenes SLCC2479]
gi|404239805|emb|CBY61206.1| RNA-binding S4 domain protein [Listeria monocytogenes SLCC7179]
Length = 259
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 84/186 (45%), Gaps = 8/186 (4%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 157
+DFL P + + ++ GG AER R + +P+ T ++ D +A I
Sbjct: 36 TDFLDPRQRFITETVIGGYDEINVQFFGGVAHAERRRALI-YPDYYTPTEADFEIALFHI 94
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
F +H LG+++ G+ R+ GDI+ G + Q LV + DYL LEK+G
Sbjct: 95 RYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGTE-WQLLVESTMKDYLTLQLEKIGK 153
Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSLASLV 277
V+V L Y P + +S+R+D + S +SR K L+ A LV
Sbjct: 154 VNVMLEETELTNAVYAPVIWEEMGLTVSSMRLDVIISNAHHISRQKAKQLVT----AGLV 209
Query: 278 QISAKA 283
+++ K
Sbjct: 210 KVNWKT 215
>gi|410594162|ref|YP_006950889.1| RNA-binding protein S4 [Streptococcus agalactiae SA20-06]
gi|410517801|gb|AFV71945.1| RNA-binding S4 [Streptococcus agalactiae SA20-06]
Length = 262
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 6/191 (3%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ I +A+ + + ++FL P K LE+ G Y Q E ++ +
Sbjct: 18 INKIDHLAQYVENTYSFITTEFLNPREFKILESVLERRGS-HYYTSGQYFQTEYVKVIIA 76
Query: 141 HPEALTSD-PDI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQ 197
PE D D ++ + I N F +H +G++L G+ R +GDI+++ E AQ
Sbjct: 77 -PEYYQLDMVDFNLSLIEIKYNAKFNHLTHAKIMGTLLNYLGVKRSILGDILVE-EGCAQ 134
Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
LV ++ ++L+ S+ K+G SV +PL L + I +SLR+D + +
Sbjct: 135 VLVDSQMTNHLVHSVTKIGTASVQLAEVPLSKLLTPKQDIQKLTVIASSLRLDKILATIL 194
Query: 258 KLSRSKLVNLI 268
K+SR++ LI
Sbjct: 195 KISRTQSTKLI 205
>gi|339441072|ref|YP_004707077.1| hypothetical protein CXIVA_00080 [Clostridium sp. SY8519]
gi|338900473|dbj|BAK45975.1| hypothetical protein CXIVA_00080 [Clostridium sp. SY8519]
Length = 252
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 88/195 (45%), Gaps = 13/195 (6%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
K I ++A R+ + +DFLT E + ++LA V GG ER L G
Sbjct: 10 KRIRDLADRSCRENRYVFTDFLTLEEQSEVLNMKQELAYVDFALYGGTEACERKMLRFGS 69
Query: 142 PEALTSDPDI-VAALSI---TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
L + + L I F P H DFLG+++ GI R+ +GDI ++ EK A
Sbjct: 70 EAQLGYSVEFPICCLRIEPRMKKFA-DPLIHRDFLGALMHLGIRRDVLGDIFVR-EKCAW 127
Query: 198 FLVVPELADYLITSLEKVGNVSVSC---TRIPLLALEYEPPRTKSFKTIEASLRVDALAS 254
+++ ++ +L KV + V C IP E P + + I AS R D L +
Sbjct: 128 LFCEEQMSSFIRDNLIKVRHTYVQCRESAEIP----EEAAPVLQPQELIVASTRADVLVA 183
Query: 255 AGFKLSRSKLVNLIR 269
+LSRS+ V L R
Sbjct: 184 KICRLSRSQSVELFR 198
>gi|295100786|emb|CBK98331.1| Uncharacterized conserved protein, contains S4-like domain
[Faecalibacterium prausnitzii L2-6]
Length = 273
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 11/196 (5%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA--DVKAVAQGGYPQAERCRLS 138
++H+ ++AR A R +S FL+ + + AL + + +GG+P AER L
Sbjct: 27 MRHVEDLARAAFGRGIARYSAFLSDREQQLAQAALNRAGAPEESCRFEGGWPDAERRVLC 86
Query: 139 VGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEK-GAQ 197
+ + + P L G Q H D+LGS++G + RE +GDI+L E+ G
Sbjct: 87 LEPEDCCPASPVCCVRLRCRALAGAQLPVHKDYLGSLMGLELRREALGDIVLPPEEPGVA 146
Query: 198 FLVVPELADYLITS-LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE----ASLRVDAL 252
+L E A LI L VG V+ + LAL+ P ++ + ++ +SLR+DA+
Sbjct: 147 YLFALEPAAALICQELRSVGRTEVTAQQ---LALDEVPEFAQAERRLQTATVSSLRLDAV 203
Query: 253 ASAGFKLSRSKLVNLI 268
+A + SR L+
Sbjct: 204 LAAMLRCSRGMAAELV 219
>gi|401682237|ref|ZP_10814131.1| S4 domain protein [Streptococcus sp. AS14]
gi|400184673|gb|EJO18911.1| S4 domain protein [Streptococcus sp. AS14]
Length = 261
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 86/189 (45%), Gaps = 10/189 (5%)
Query: 85 LEMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG- 140
LE+ +R + FL P +LK + K DV+ A Y +E R+ V
Sbjct: 21 LELLQRVQDTYAFETTSFLNPHQVSILKN----IGKQYDVQVFASSDYFPSELARVLVAP 76
Query: 141 HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFL 199
L D ++ L I+ F H +G++L GI R GDI++ G++ AQ
Sbjct: 77 SYYQLNMDDFELSLLEISYASKFYKIIHSQIMGTLLNHLGIERRTFGDILVVGDR-AQLF 135
Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
V LA Y I + KV + V + E ++ + + + +SLR+D L ++ FKL
Sbjct: 136 VDKRLAQYFIDHVTKVAKMPVKLKEVSFAEQLKEQKQSVTREILASSLRLDKLVASTFKL 195
Query: 260 SRSKLVNLI 268
SRS+ LI
Sbjct: 196 SRSQAAQLI 204
>gi|372325203|ref|ZP_09519792.1| hypothetical protein OKIT_1327 [Oenococcus kitaharae DSM 17330]
gi|366984011|gb|EHN59410.1| hypothetical protein OKIT_1327 [Oenococcus kitaharae DSM 17330]
Length = 257
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 85/177 (48%), Gaps = 6/177 (3%)
Query: 95 REVLHSDFLTPPVLKESMMALEKLADVKA---VAQGGYPQAERCRLSVGHPEALTSDPDI 151
R FLT + + L LA A V GGYPQAE R +G E +D I
Sbjct: 27 RAAFKDSFLTVFLNPREQLLLAGLAKQDALPIVFSGGYPQAENKRALIG-AEDGKADFQI 85
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
A L + + H LGS+L GIA ++IGD+I + ++ Q L+ +LA++++ +
Sbjct: 86 -AVLQLDYAVKYIHLHHSTILGSLLHQGIAYDRIGDVIHEADRW-QILIDAQLAEFVVEN 143
Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+++ G+ ++ + + K + I AS R+D L S + SR+ +LI
Sbjct: 144 VKRAGSKKIAFHEVAASEMLAPESDEKEKEVIVASQRIDLLISQIYNFSRAHAKDLI 200
>gi|317058533|ref|ZP_07923018.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
gi|313684209|gb|EFS21044.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
Length = 257
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Query: 121 VKAVAQGGYPQAERCRLSVGHPEALTSD-----PDIVAALSITGNFGFQPCSHGDFLGSI 175
+KAV GGY A R R+ PE L D++ L +T +H D+LG+
Sbjct: 53 IKAVFWGGYEGAMR-RILFFLPEYLEEHSYETFEDVLGVLEVTKLDKNLSLNHRDYLGAF 111
Query: 176 LGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPP 235
G G+ RE +GDI+++ E GA +V+ E+ L+ VG SV L L +
Sbjct: 112 TGLGLKRETMGDILVR-ENGADLIVLKEMIPILLEEYCSVGKSSVQVQEKSLKKLIFVEE 170
Query: 236 RTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSL 273
K + ASLR+D + F LSR++ I+ S+
Sbjct: 171 NQKKERGTVASLRLDNVLCEIFNLSRTQAQEWIQKGSV 208
>gi|76787217|ref|YP_329217.1| S4 domain-containing protein [Streptococcus agalactiae A909]
gi|77405577|ref|ZP_00782667.1| ylmH protein [Streptococcus agalactiae H36B]
gi|406709016|ref|YP_006763742.1| S4 domain-containing protein [Streptococcus agalactiae
GD201008-001]
gi|76562274|gb|ABA44858.1| S4 domain protein [Streptococcus agalactiae A909]
gi|77175799|gb|EAO78578.1| ylmH protein [Streptococcus agalactiae H36B]
gi|406649901|gb|AFS45302.1| S4 domain-containing protein [Streptococcus agalactiae
GD201008-001]
Length = 262
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 92/194 (47%), Gaps = 9/194 (4%)
Query: 78 IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
I ++ H +A+ + + ++FL P K LE+ G Y Q E ++
Sbjct: 18 IHKIDH---LAQYVENTYSFITTEFLNPREFKILESVLERRGS-HYYTSGQYFQTEYVKV 73
Query: 138 SVGHPEALTSD-PDI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEK 194
+ PE D D ++ + I N F +H +G++L G+ R +GDI+++ E
Sbjct: 74 IIA-PEYYQLDMVDFNLSLIEIKYNAKFNHLTHAKIMGTLLNYLGVKRSILGDILVE-EG 131
Query: 195 GAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALAS 254
AQ LV ++ ++L+ S+ K+G SV +PL L + I +SLR+D + +
Sbjct: 132 CAQVLVDSQMTNHLVHSVTKIGTASVQLAEVPLSKLLTPKQDIQKLTVIASSLRLDKILA 191
Query: 255 AGFKLSRSKLVNLI 268
K+SR++ LI
Sbjct: 192 TILKISRTQSTKLI 205
>gi|424714906|ref|YP_007015621.1| Putative RNA-binding protein ylmH [Listeria monocytogenes serotype
4b str. LL195]
gi|424014090|emb|CCO64630.1| Putative RNA-binding protein ylmH [Listeria monocytogenes serotype
4b str. LL195]
Length = 260
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 84/186 (45%), Gaps = 8/186 (4%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 157
+DFL P + + ++ GG AER R + +P+ T ++ D +A I
Sbjct: 37 TDFLDPRQRFITETVIGGYDEINVQFFGGVAHAERRRALI-YPDYYTPTEADFEIALFHI 95
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
F +H LG+++ G+ R+ GDI+ G + Q LV + DYL LEK+G
Sbjct: 96 RYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGTE-WQLLVESTMKDYLTLQLEKIGK 154
Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSLASLV 277
V+V L Y P + +S+R+D + S +SR K L+ A LV
Sbjct: 155 VNVMLEETDLANAVYAPVVWEEMGLTVSSMRLDVIISNAHHISRQKAKQLV----TAGLV 210
Query: 278 QISAKA 283
+++ K
Sbjct: 211 KVNWKT 216
>gi|430826927|ref|ZP_19445095.1| S4 domain-containing protein [Enterococcus faecium E0164]
gi|430444473|gb|ELA54311.1| S4 domain-containing protein [Enterococcus faecium E0164]
Length = 260
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 10/155 (6%)
Query: 119 ADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSIL 176
+D++ + GGY QAER C + + E + D + A I F SHG LG+++
Sbjct: 55 SDLRFMFYGGYEQAERKRCLIFPDYYEPVKEDFE-TALYEIHYPSKFASLSHGKILGTLV 113
Query: 177 GTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPR 236
GTGI R GDII G++ Q + E+ ++ + K+G V+V P+ E P+
Sbjct: 114 GTGIKRSYFGDIISDGDR-WQVFIANEVDHFVAAQVTKIGKVAVRLE--PIKYTEMIMPK 170
Query: 237 ---TKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
T+ T+ +S+R+D++ S + +SR + LI
Sbjct: 171 DSWTQERGTV-SSMRLDSVISEIYNISRQRSKQLI 204
>gi|257899130|ref|ZP_05678783.1| RNA binding protein S4 [Enterococcus faecium Com15]
gi|293571725|ref|ZP_06682744.1| S4 domain protein [Enterococcus faecium E980]
gi|430840726|ref|ZP_19458649.1| S4 domain-containing protein [Enterococcus faecium E1007]
gi|431066287|ref|ZP_19493910.1| S4 domain-containing protein [Enterococcus faecium E1604]
gi|431099331|ref|ZP_19496497.1| S4 domain-containing protein [Enterococcus faecium E1613]
gi|431594952|ref|ZP_19522058.1| S4 domain-containing protein [Enterococcus faecium E1861]
gi|431738282|ref|ZP_19527227.1| S4 domain-containing protein [Enterococcus faecium E1972]
gi|431741883|ref|ZP_19530783.1| S4 domain-containing protein [Enterococcus faecium E2039]
gi|257837042|gb|EEV62116.1| RNA binding protein S4 [Enterococcus faecium Com15]
gi|291608182|gb|EFF37485.1| S4 domain protein [Enterococcus faecium E980]
gi|430494932|gb|ELA71150.1| S4 domain-containing protein [Enterococcus faecium E1007]
gi|430568326|gb|ELB07374.1| S4 domain-containing protein [Enterococcus faecium E1604]
gi|430570832|gb|ELB09771.1| S4 domain-containing protein [Enterococcus faecium E1613]
gi|430590878|gb|ELB28924.1| S4 domain-containing protein [Enterococcus faecium E1861]
gi|430597720|gb|ELB35503.1| S4 domain-containing protein [Enterococcus faecium E1972]
gi|430601036|gb|ELB38658.1| S4 domain-containing protein [Enterococcus faecium E2039]
Length = 260
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 92/178 (51%), Gaps = 18/178 (10%)
Query: 100 SDFLTPPVLKESMMALEKL----ADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVA 153
++FL P ++S + LE L +D++ + GGY QAER C + + E + D + A
Sbjct: 36 TEFLDP---RQSYI-LETLIRQSSDLRFMFYGGYEQAERKRCLIFPDYYEPVEEDFE-TA 90
Query: 154 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
I F SHG LG+++GTGI R GDII G++ Q + E+ ++ +
Sbjct: 91 LYEIHYPSKFASLSHGKILGTLVGTGIKRSYFGDIISDGDR-WQVFIANEVDHFVAAQVT 149
Query: 214 KVGNVSVSCTRIPLLALEYEPPR---TKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+G V+V P+ E P+ T+ T+ +S+R+D++ S + +SR + LI
Sbjct: 150 KIGKVAVRLE--PIKYTEMILPKDSWTQERGTV-SSMRLDSVISEIYNISRQRSKQLI 204
>gi|217963827|ref|YP_002349505.1| S4 domain-containing protein [Listeria monocytogenes HCC23]
gi|386008792|ref|YP_005927070.1| RNA-binding S4 domain-containing protein [Listeria monocytogenes
L99]
gi|386027401|ref|YP_005948177.1| hypothetical protein LMM7_2114 [Listeria monocytogenes M7]
gi|217333097|gb|ACK38891.1| S4 domain protein [Listeria monocytogenes HCC23]
gi|307571602|emb|CAR84781.1| RNA-binding S4 domain protein [Listeria monocytogenes L99]
gi|336023982|gb|AEH93119.1| hypothetical protein LMM7_2114 [Listeria monocytogenes M7]
Length = 259
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 84/186 (45%), Gaps = 8/186 (4%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 157
+DFL P + + ++ GG AER R + +P+ T ++ D +A I
Sbjct: 36 TDFLDPRQRFITETVIGGYDEINVQFFGGVAHAERRRALI-YPDYYTPTEADFEIALFHI 94
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
F +H LG+++ G+ R+ GDI+ G + Q LV + DYL LEK+G
Sbjct: 95 RYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGTE-WQLLVESTMKDYLTLQLEKIGK 153
Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSLASLV 277
V+V L Y P + +S+R+D + S +SR K L+ A LV
Sbjct: 154 VNVMLEETDLANAVYAPVVWEEMGLTVSSMRLDVIISNAHHISRQKAKQLVT----AGLV 209
Query: 278 QISAKA 283
+++ K
Sbjct: 210 KVNWKT 215
>gi|218282318|ref|ZP_03488608.1| hypothetical protein EUBIFOR_01190 [Eubacterium biforme DSM 3989]
gi|218216691|gb|EEC90229.1| hypothetical protein EUBIFOR_01190 [Eubacterium biforme DSM 3989]
Length = 242
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 9/146 (6%)
Query: 120 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTG 179
++ V GGY AER +++ PE D V L T N F+ +H D LG ++ +G
Sbjct: 45 NICVVFDGGYENAER-KIACFIPEGYEGFSDCVC-LHATYNSKFKTLTHSDLLGCLMHSG 102
Query: 180 IAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT-- 237
I R IGD+I+Q E +++ Y+I + ++G CT + L+YE ++
Sbjct: 103 IERSVIGDLIVQ-EDDLYIFCKEKISKYIIDNCAQIG----KCTVHFEVCLDYEITKSNK 157
Query: 238 KSFKTIEASLRVDALASAGFKLSRSK 263
K + + +SLR+D++ + SRS+
Sbjct: 158 KEIRIMCSSLRLDSVVAQLSHCSRSE 183
>gi|46908264|ref|YP_014653.1| S4 domain-containing protein [Listeria monocytogenes serotype 4b
str. F2365]
gi|47094010|ref|ZP_00231742.1| S4 domain protein [Listeria monocytogenes str. 4b H7858]
gi|254826216|ref|ZP_05231217.1| S4 domain-containing protein [Listeria monocytogenes FSL J1-194]
gi|254933456|ref|ZP_05266815.1| S4 domain-containing protein [Listeria monocytogenes HPB2262]
gi|254992791|ref|ZP_05274981.1| S4 domain protein [Listeria monocytogenes FSL J2-064]
gi|255522100|ref|ZP_05389337.1| S4 domain protein [Listeria monocytogenes FSL J1-175]
gi|386054282|ref|YP_005971840.1| S4 domain-containing protein [Listeria monocytogenes Finland 1998]
gi|405750383|ref|YP_006673849.1| RNA-binding S4 domain-containing protein [Listeria monocytogenes
ATCC 19117]
gi|405753256|ref|YP_006676721.1| RNA-binding S4 domain-containing protein [Listeria monocytogenes
SLCC2378]
gi|417315684|ref|ZP_12102358.1| S4 domain protein [Listeria monocytogenes J1816]
gi|417318120|ref|ZP_12104714.1| S4 domain protein [Listeria monocytogenes J1-220]
gi|424823798|ref|ZP_18248811.1| S4 domain protein [Listeria monocytogenes str. Scott A]
gi|46881535|gb|AAT04830.1| S4 domain protein [Listeria monocytogenes serotype 4b str. F2365]
gi|47017615|gb|EAL08416.1| S4 domain protein [Listeria monocytogenes str. 4b H7858]
gi|293585017|gb|EFF97049.1| S4 domain-containing protein [Listeria monocytogenes HPB2262]
gi|293595457|gb|EFG03218.1| S4 domain-containing protein [Listeria monocytogenes FSL J1-194]
gi|328466091|gb|EGF37261.1| S4 domain protein [Listeria monocytogenes J1816]
gi|328472677|gb|EGF43535.1| S4 domain protein [Listeria monocytogenes J1-220]
gi|332312478|gb|EGJ25573.1| S4 domain protein [Listeria monocytogenes str. Scott A]
gi|346646933|gb|AEO39558.1| S4 domain-containing protein [Listeria monocytogenes Finland 1998]
gi|404219583|emb|CBY70947.1| RNA-binding S4 domain protein [Listeria monocytogenes ATCC 19117]
gi|404222456|emb|CBY73819.1| RNA-binding S4 domain protein [Listeria monocytogenes SLCC2378]
Length = 258
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 84/186 (45%), Gaps = 8/186 (4%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 157
+DFL P + + ++ GG AER R + +P+ T ++ D +A I
Sbjct: 35 TDFLDPRQRFITETVIGGYDEINVQFFGGVAHAERRRALI-YPDYYTPTEADFEIALFHI 93
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
F +H LG+++ G+ R+ GDI+ G + Q LV + DYL LEK+G
Sbjct: 94 RYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGTE-WQLLVESTMKDYLTLQLEKIGK 152
Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSLASLV 277
V+V L Y P + +S+R+D + S +SR K L+ A LV
Sbjct: 153 VNVMLEETDLANAVYAPVVWEEMGLTVSSMRLDVIISNAHHISRQKAKQLVT----AGLV 208
Query: 278 QISAKA 283
+++ K
Sbjct: 209 KVNWKT 214
>gi|405756200|ref|YP_006679664.1| RNA-binding S4 domain-containing protein [Listeria monocytogenes
SLCC2540]
gi|404225400|emb|CBY76762.1| RNA-binding S4 domain protein [Listeria monocytogenes SLCC2540]
Length = 258
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 84/186 (45%), Gaps = 8/186 (4%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 157
+DFL P + + ++ GG AER R + +P+ T ++ D +A I
Sbjct: 35 TDFLDPRQRFITETVIGGYDEINVQFFGGVAHAERRRALI-YPDYYTPTEADFEIALFHI 93
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
F +H LG+++ G+ R+ GDI+ G + Q LV + DYL LEK+G
Sbjct: 94 RYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGTE-WQLLVESTMKDYLTLQLEKIGK 152
Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSLASLV 277
V+V L Y P + +S+R+D + S +SR K L+ A LV
Sbjct: 153 VNVMLEETDLANAVYAPVVWEEMGLTVSSMRLDVIISNAHHISRQKAKQLVT----AGLV 208
Query: 278 QISAKA 283
+++ K
Sbjct: 209 KVNWKT 214
>gi|47097617|ref|ZP_00235141.1| S4 domain protein [Listeria monocytogenes str. 1/2a F6854]
gi|254912587|ref|ZP_05262599.1| S4 domain-containing protein [Listeria monocytogenes J2818]
gi|254936913|ref|ZP_05268610.1| S4 domain-containing protein [Listeria monocytogenes F6900]
gi|386047680|ref|YP_005966012.1| S4 domain-containing protein [Listeria monocytogenes J0161]
gi|47014004|gb|EAL05013.1| S4 domain protein [Listeria monocytogenes str. 1/2a F6854]
gi|258609513|gb|EEW22121.1| S4 domain-containing protein [Listeria monocytogenes F6900]
gi|293590578|gb|EFF98912.1| S4 domain-containing protein [Listeria monocytogenes J2818]
gi|345534671|gb|AEO04112.1| S4 domain-containing protein [Listeria monocytogenes J0161]
Length = 258
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 84/186 (45%), Gaps = 8/186 (4%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 157
+DFL P + + ++ GG AER R + +P+ T ++ D +A I
Sbjct: 35 TDFLDPRQRFITETVIGGYDEINVQFFGGVAHAERRRALI-YPDYYTPTEADFEIALFHI 93
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
F +H LG+++ G+ R+ GDI+ G + Q LV + DYL LEK+G
Sbjct: 94 RYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGTE-WQLLVESTMKDYLTLQLEKIGK 152
Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSLASLV 277
V+V L Y P + +S+R+D + S +SR K L+ A LV
Sbjct: 153 VNVMLEETDLANAVYAPVVWEEIGLTVSSMRLDVIISNAHHISRQKAKQLVT----AGLV 208
Query: 278 QISAKA 283
+++ K
Sbjct: 209 KVNWKT 214
>gi|421531599|ref|ZP_15977979.1| hypothetical protein M3M_00842 [Streptococcus agalactiae
STIR-CD-17]
gi|403643127|gb|EJZ03915.1| hypothetical protein M3M_00842 [Streptococcus agalactiae
STIR-CD-17]
Length = 262
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 6/191 (3%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ I +A+ + + ++FL P K LE+ G Y Q E ++ +
Sbjct: 18 INKIDHLAQYVENTYSFITTEFLNPREFKILESVLERRGS-HYYTSGQYFQTEYVKVIIA 76
Query: 141 HPEALTSD-PDI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQ 197
PE D D ++ + I N F +H +G++L G+ R +GDI+++ E AQ
Sbjct: 77 -PEYYQLDMVDFNLSLIEIKYNAKFNHLTHAKIMGTLLNYLGVKRSILGDILVE-ECCAQ 134
Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
LV ++ ++L+ S+ K+G SV +PL L + I +SLR+D + +
Sbjct: 135 VLVDSQMTNHLVHSVTKIGTASVQLAEVPLSKLLTPKQDIQKLTVIASSLRLDKILATIL 194
Query: 258 KLSRSKLVNLI 268
K+SR++ LI
Sbjct: 195 KISRTQSTKLI 205
>gi|229168638|ref|ZP_04296360.1| RNA-binding S4 domain protein [Bacillus cereus AH621]
gi|228614794|gb|EEK71897.1| RNA-binding S4 domain protein [Bacillus cereus AH621]
Length = 241
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 94/197 (47%), Gaps = 9/197 (4%)
Query: 89 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
++A+ +V +DFL P + M + + DV G P+AER R + +P+ L +
Sbjct: 8 KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVRFGGAMPEAERKRALI-YPDYLELN 65
Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 206
+ V L I F H LG+ + G+ REK GDI+LQ E AQ V E+
Sbjct: 66 EEEFQVEVLEIDYPSKFFTLEHRQILGAFMSLGLTREKCGDILLQ-EDRAQIAVAKEVVS 124
Query: 207 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 266
Y+ +L+ +G + V+ + I + + + +SLR+D L + +SR K+
Sbjct: 125 YIEMNLQSIGKMKVTLSPIQVEKILRVGEKWGEKSGTVSSLRLDVLLAEMLHISRQKVQP 184
Query: 267 LIRYSSLASLVQISAKA 283
LI+ LV+++ K
Sbjct: 185 LIK----GGLVKVNWKT 197
>gi|241895685|ref|ZP_04782981.1| ribosomal protein S4e [Weissella paramesenteroides ATCC 33313]
gi|241871052|gb|EER74803.1| ribosomal protein S4e [Weissella paramesenteroides ATCC 33313]
Length = 261
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 80/175 (45%), Gaps = 5/175 (2%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSV--GHPEALTSDPDIVAALSI 157
++FL P + + + D+K GGY AE RL + + E + D D++ + I
Sbjct: 36 TNFLNPREIYILKTLVNQQDDLKVFQYGGYQNAENQRLLIAPNYYEPIQDDFDLMV-IQI 94
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE-LADYLITSLEKVG 216
F H LG+ + GIAR+ IGDII +GE + V + + +++ L+ +G
Sbjct: 95 KYPEKFATLHHSTILGTFMHNGIARQSIGDII-KGEAETWYFVATKAIGTFILRHLDHIG 153
Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYS 271
V + + T +SLR+D++ + G+ +SR+ +I +
Sbjct: 154 KAKVRFEEVMANQIVVVDDEWTIINTTVSSLRLDSIVANGYNISRNHAKQMIEHD 208
>gi|315304053|ref|ZP_07874473.1| S4 domain-containing protein [Listeria ivanovii FSL F6-596]
gi|313627577|gb|EFR96290.1| S4 domain-containing protein [Listeria ivanovii FSL F6-596]
Length = 258
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 89/188 (47%), Gaps = 12/188 (6%)
Query: 100 SDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAAL 155
+DFL P + E+++ +K GG AER R + +P+ T ++ D +A
Sbjct: 35 TDFLDPRQRYIIETIIG--GYDQIKVQFFGGVAHAERRRALI-YPDYYTPTEADFEIALF 91
Query: 156 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 215
I F +H LG+++ G+ R+ GDI L + Q LV ++ DYL LEK+
Sbjct: 92 HIRYPVKFTTLTHQKILGTLMSLGMKRDIFGDI-LNKDTEWQLLVESKMKDYLTLQLEKI 150
Query: 216 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSLAS 275
G V+V L + P + +S+R+D + S+ +SR K L+ +A
Sbjct: 151 GKVNVMLEETDLSEAVFTPTVWEEMGLTVSSMRLDVIISSAHHISRQKAKQLV----VAG 206
Query: 276 LVQISAKA 283
LV+++ K
Sbjct: 207 LVKVNWKT 214
>gi|422810104|ref|ZP_16858515.1| S4 domain-containing protein [Listeria monocytogenes FSL J1-208]
gi|378751768|gb|EHY62356.1| S4 domain-containing protein [Listeria monocytogenes FSL J1-208]
Length = 258
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 84/186 (45%), Gaps = 8/186 (4%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 157
+DFL P + + ++ GG AER R + +P+ T ++ D +A I
Sbjct: 35 TDFLDPRQRFITETVIGGYDEINVQFFGGVAHAERRRALI-YPDYYTPTEADFEIALFHI 93
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
F +H LG+++ G+ R+ GDI+ G + Q LV + DYL LEK+G
Sbjct: 94 RYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGTE-WQLLVESAMKDYLTLQLEKIGK 152
Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSLASLV 277
V+V L Y P + +S+R+D + S +SR K L+ A LV
Sbjct: 153 VNVMLEETDLANAVYAPVVWEEMGLTVSSMRLDVIISNAHHISRQKAKQLV----TAGLV 208
Query: 278 QISAKA 283
+++ K
Sbjct: 209 KVNWKT 214
>gi|227550465|ref|ZP_03980514.1| ribosomal protein S4e [Enterococcus faecium TX1330]
gi|257888493|ref|ZP_05668146.1| RNA binding protein S4 [Enterococcus faecium 1,141,733]
gi|257897132|ref|ZP_05676785.1| RNA binding protein S4 [Enterococcus faecium Com12]
gi|293377355|ref|ZP_06623559.1| S4 domain protein [Enterococcus faecium PC4.1]
gi|424763055|ref|ZP_18190534.1| S4 domain protein [Enterococcus faecium TX1337RF]
gi|431031532|ref|ZP_19490706.1| S4 domain-containing protein [Enterococcus faecium E1590]
gi|431751286|ref|ZP_19539977.1| S4 domain-containing protein [Enterococcus faecium E2620]
gi|431758414|ref|ZP_19547041.1| S4 domain-containing protein [Enterococcus faecium E3083]
gi|431763887|ref|ZP_19552435.1| S4 domain-containing protein [Enterococcus faecium E3548]
gi|227180366|gb|EEI61338.1| ribosomal protein S4e [Enterococcus faecium TX1330]
gi|257824547|gb|EEV51479.1| RNA binding protein S4 [Enterococcus faecium 1,141,733]
gi|257833697|gb|EEV60118.1| RNA binding protein S4 [Enterococcus faecium Com12]
gi|292644047|gb|EFF62153.1| S4 domain protein [Enterococcus faecium PC4.1]
gi|402423522|gb|EJV55735.1| S4 domain protein [Enterococcus faecium TX1337RF]
gi|430564942|gb|ELB04117.1| S4 domain-containing protein [Enterococcus faecium E1590]
gi|430615726|gb|ELB52669.1| S4 domain-containing protein [Enterococcus faecium E2620]
gi|430617472|gb|ELB54345.1| S4 domain-containing protein [Enterococcus faecium E3083]
gi|430621711|gb|ELB58463.1| S4 domain-containing protein [Enterococcus faecium E3548]
Length = 260
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 92/178 (51%), Gaps = 18/178 (10%)
Query: 100 SDFLTPPVLKESMMALEKL----ADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVA 153
++FL P ++S + LE L +D++ + GGY QAER C + + E + D + A
Sbjct: 36 TEFLDP---RQSYI-LETLIRQSSDLRFMFYGGYEQAERKRCLIFPDYYEPVEEDFE-TA 90
Query: 154 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
I F SHG LG+++GTGI R GDII G++ Q + E+ ++ +
Sbjct: 91 LYEIHYPSKFASLSHGKILGTLVGTGIKRSYFGDIISDGDR-WQVFIANEVDHFVAAQVT 149
Query: 214 KVGNVSVSCTRIPLLALEYEPPR---TKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+G V+V P+ E P+ T+ T+ +S+R+D++ S + +SR + LI
Sbjct: 150 KIGKVAVRLE--PIKYTEMILPKDSWTQERGTV-SSMRLDSVISEIYNISRQRSKQLI 204
>gi|407718567|ref|YP_006795972.1| S4 domain-containing protein [Leuconostoc carnosum JB16]
gi|407242323|gb|AFT81973.1| S4 domain-containing protein [Leuconostoc carnosum JB16]
Length = 264
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 86/187 (45%), Gaps = 5/187 (2%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
E ++ + E R++ + + FL P + ++ D+ GG AE R
Sbjct: 18 EFIQQVGEWIRQSEDEYRGILTKFLNPREQYILQTLVNRVKDLTVTYNGGTIGAENQRAI 77
Query: 139 VGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
+ P+ SD ++ A L + F H LGS++ GI R+ IGDI+ +
Sbjct: 78 IA-PDFYQFNLSDFEL-ALLEVKYPVKFVELHHSTLLGSLMNAGITRDVIGDILFDDSQQ 135
Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASA 255
Q +V ++ YL ++EKVG+V ++ + + + + + +SLRVD + +A
Sbjct: 136 WQIIVDAKMVPYLQQTIEKVGHVKITLSVADFSHVIQKHDDWEEIFLLSSSLRVDTVIAA 195
Query: 256 GFKLSRS 262
F +SRS
Sbjct: 196 AFAISRS 202
>gi|422846174|ref|ZP_16892857.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK72]
gi|325688225|gb|EGD30244.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK72]
Length = 261
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 85/189 (44%), Gaps = 10/189 (5%)
Query: 85 LEMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG- 140
LE+ +R + FL P +LK + K DV+ A Y +E ++ V
Sbjct: 21 LELFQRVQDTYAFETTSFLNPHQVSILKN----IGKQYDVQVFASSDYFPSELAKVLVAP 76
Query: 141 HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFL 199
L D ++ L I+ F SH +G++L GI R GDI++ G+ AQ
Sbjct: 77 SYYQLNMDDFELSLLEISYASKFYKISHSQIMGTLLNQLGIERRTFGDILVVGD-CAQLF 135
Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
V LA Y I + K+ + V + E + + + + +SLR+D L ++ FKL
Sbjct: 136 VDKRLAQYFIDHVSKIAKMPVKLKEVSFAEQLKEQKQAATREILASSLRLDKLVASTFKL 195
Query: 260 SRSKLVNLI 268
SRS+ LI
Sbjct: 196 SRSQATQLI 204
>gi|312111751|ref|YP_003990067.1| RNA-binding S4 domain-containing protein [Geobacillus sp. Y4.1MC1]
gi|311216852|gb|ADP75456.1| RNA-binding S4 domain protein [Geobacillus sp. Y4.1MC1]
Length = 257
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 88/185 (47%), Gaps = 8/185 (4%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
+DFL P + + + +V GG ER R + P S+ D +A +
Sbjct: 34 TDFLDPREQQIVQSVIGRDEEVHFSFFGGASFTERKRALLYPPYFQPSEEDYEIALFEVR 93
Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 218
F H LG+++ G+ R K GDI+++ E+ QFL E+ADY+ L +G
Sbjct: 94 YPSKFVTIGHRQVLGALMSLGLRRGKFGDILMKDEQ-IQFLAANEVADYIRLHLHAIGKA 152
Query: 219 SVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSLASLV 277
+VS + PL ++ E + T+ +SLR+DA+ S F SR K+ + I LV
Sbjct: 153 NVSVEKKPLTDIIKLEENWQDAMITV-SSLRLDAILSQAFHTSRQKIQSCIE----NGLV 207
Query: 278 QISAK 282
+++ K
Sbjct: 208 KVNWK 212
>gi|452995419|emb|CCQ92906.1| putative RNA-binding protein ylmH [Clostridium ultunense Esp]
Length = 261
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 78/176 (44%), Gaps = 11/176 (6%)
Query: 100 SDFLTPPVLKESMMALEKLA----DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVA 153
+DFL P M L LA + GGY AER R L + +
Sbjct: 36 TDFLDP----RQMEILRNLAMHRGGIALFENGGYEGAERKRTLLLPEGENPPEEEEFHIG 91
Query: 154 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
L I F H D+LG++L GI REK GD+ E+GA ++ E+ADY+ L
Sbjct: 92 FLHIRPRGRFYSLEHRDYLGALLHVGIKREKFGDL-WTVEEGAMLVLAEEMADYVSLQLT 150
Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIR 269
+VG V V R E + + + +S+R+DA+ + LSR+K I+
Sbjct: 151 EVGRVPVVVERKEKGEWELPTVKLEERRITTSSMRLDAVLAEMLPLSRAKTSEWIK 206
>gi|336236134|ref|YP_004588750.1| RNA-binding S4 domain-containing protein [Geobacillus
thermoglucosidasius C56-YS93]
gi|423720667|ref|ZP_17694849.1| RNA-binding S4 domain-containing protein [Geobacillus
thermoglucosidans TNO-09.020]
gi|335362989|gb|AEH48669.1| RNA-binding S4 domain protein [Geobacillus thermoglucosidasius
C56-YS93]
gi|383366020|gb|EID43311.1| RNA-binding S4 domain-containing protein [Geobacillus
thermoglucosidans TNO-09.020]
Length = 257
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 88/185 (47%), Gaps = 8/185 (4%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
+DFL P + + + +V GG ER R + P S+ D +A +
Sbjct: 34 TDFLDPREQQIVQSVIGRDEEVHFSFFGGASFTERKRALLYPPYFQPSEEDYEIALFEVR 93
Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 218
F H LG+++ G+ R K GDI+++ E+ QFL E+ADY+ L +G
Sbjct: 94 YPSKFVTIGHRQVLGALMSLGLRRGKFGDILMKDEQ-IQFLAANEVADYIRLHLHAIGKA 152
Query: 219 SVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSLASLV 277
+VS + PL ++ E + T+ +SLR+DA+ S F SR K+ + I LV
Sbjct: 153 NVSVEKKPLTDIIKLEENWQDAMITV-SSLRLDAILSQAFHASRQKIQSCIE----NGLV 207
Query: 278 QISAK 282
+++ K
Sbjct: 208 KVNWK 212
>gi|52141591|ref|YP_085238.1| S4 domain-containing protein [Bacillus cereus E33L]
gi|51975060|gb|AAU16610.1| S4 domain protein [Bacillus cereus E33L]
Length = 255
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 100/206 (48%), Gaps = 12/206 (5%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE ++A+ +V +DFL P + M + + D+ G +AER R +
Sbjct: 15 VDKVLEW-KQAAEHHQVKLTDFLDPRQQQIVTMVIGQ-GDIAVQFDGATSRAERKRALI- 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ E AQ
Sbjct: 72 YPDYLVVNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQI 130
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGF 257
+V E+ Y+ +L+ +G V VS + + L+ + + T+ +SLR+D + +
Sbjct: 131 VVAKEVVSYIEMNLQSIGKVKVSLSPVKGEKILQIQETWGEKSGTV-SSLRLDVMLAEML 189
Query: 258 KLSRSKLVNLIRYSSLASLVQISAKA 283
+SR K+ I+ LV+++ K
Sbjct: 190 HISRQKVQPFIK----NGLVKVNWKT 211
>gi|390630014|ref|ZP_10258004.1| S4 domain-containing protein YlmH [Weissella confusa LBAE C39-2]
gi|390484805|emb|CCF30352.1| S4 domain-containing protein YlmH [Weissella confusa LBAE C39-2]
Length = 261
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 82/177 (46%), Gaps = 15/177 (8%)
Query: 100 SDFLTPPVLKESMMALEKLAD----VKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VA 153
++FL P LE L + +K GGY AE R S+ P+ D +A
Sbjct: 36 TNFLNP----RQRYILETLVNQHDELKIAHSGGYTDAESAR-SLIAPDYYDVQQDDFEIA 90
Query: 154 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
A+ I F H LG+++ G++R+ GDII E Q + ++A ++ +SL+
Sbjct: 91 AIRINYPTKFAELHHSTVLGTLINNGLSRDSFGDIISSEEGDWQIVATEQMARFITSSLD 150
Query: 214 KVGNVSVSCTRIPLLALEYEPPRTK--SFKTIEASLRVDALASAGFKLSRSKLVNLI 268
VG V P++ + P+ + T +SLR+D + + G+ +SR+ L+
Sbjct: 151 HVGKTKVRFE--PMMLADIVTPQEEWDDINTTVSSLRLDTIVANGYNVSRTHAKELV 205
>gi|228928946|ref|ZP_04091978.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228947617|ref|ZP_04109907.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228812137|gb|EEM58468.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228830753|gb|EEM76358.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 241
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 98/200 (49%), Gaps = 15/200 (7%)
Query: 89 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
++A+ +V +DFL P + M + + D+ G +AER R + +P+ L +
Sbjct: 8 KQAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDIAVQFDGATSRAERKRALI-YPDYLVVN 65
Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 206
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 66 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQIVVAKEVVS 124
Query: 207 YLITSLEKVGNVSVSCTRIPLLA---LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 263
Y+ +L+ +G V VS + P+ L+ + + T+ +SLR+D + + +SR K
Sbjct: 125 YIEMNLQSIGKVKVSLS--PVQGEKILQIQETWGEKSGTV-SSLRLDVMLAEMLHISRQK 181
Query: 264 LVNLIRYSSLASLVQISAKA 283
+ LI+ LV+++ K
Sbjct: 182 VQPLIK----NGLVKVNWKT 197
>gi|30263899|ref|NP_846276.1| S4 domain-containing protein [Bacillus anthracis str. Ames]
gi|47529329|ref|YP_020678.1| s4 domain-containing protein [Bacillus anthracis str. 'Ames
Ancestor']
gi|49186747|ref|YP_029999.1| S4 domain-containing protein [Bacillus anthracis str. Sterne]
gi|65321226|ref|ZP_00394185.1| COG2302: Uncharacterized conserved protein, contains S4-like domain
[Bacillus anthracis str. A2012]
gi|165872308|ref|ZP_02216945.1| S4 domain protein [Bacillus anthracis str. A0488]
gi|167641130|ref|ZP_02399385.1| S4 domain protein [Bacillus anthracis str. A0193]
gi|170708812|ref|ZP_02899248.1| S4 domain protein [Bacillus anthracis str. A0389]
gi|177654925|ref|ZP_02936642.1| S4 domain protein [Bacillus anthracis str. A0174]
gi|190566209|ref|ZP_03019128.1| S4 domain protein [Bacillus anthracis str. Tsiankovskii-I]
gi|227813193|ref|YP_002813202.1| S4 domain-containing protein [Bacillus anthracis str. CDC 684]
gi|229601099|ref|YP_002868133.1| S4 domain protein [Bacillus anthracis str. A0248]
gi|254735937|ref|ZP_05193643.1| S4 domain protein [Bacillus anthracis str. Western North America
USA6153]
gi|254751005|ref|ZP_05203044.1| S4 domain protein [Bacillus anthracis str. Vollum]
gi|254757937|ref|ZP_05209964.1| S4 domain protein [Bacillus anthracis str. Australia 94]
gi|421507439|ref|ZP_15954359.1| S4 domain-containing protein [Bacillus anthracis str. UR-1]
gi|30258543|gb|AAP27762.1| S4 domain protein [Bacillus anthracis str. Ames]
gi|47504477|gb|AAT33153.1| S4 domain protein [Bacillus anthracis str. 'Ames Ancestor']
gi|49180674|gb|AAT56050.1| S4 domain protein [Bacillus anthracis str. Sterne]
gi|164711984|gb|EDR17524.1| S4 domain protein [Bacillus anthracis str. A0488]
gi|167510910|gb|EDR86301.1| S4 domain protein [Bacillus anthracis str. A0193]
gi|170126297|gb|EDS95188.1| S4 domain protein [Bacillus anthracis str. A0389]
gi|172080436|gb|EDT65523.1| S4 domain protein [Bacillus anthracis str. A0174]
gi|190563128|gb|EDV17094.1| S4 domain protein [Bacillus anthracis str. Tsiankovskii-I]
gi|227003302|gb|ACP13045.1| S4 domain protein [Bacillus anthracis str. CDC 684]
gi|229265507|gb|ACQ47144.1| S4 domain protein [Bacillus anthracis str. A0248]
gi|401822573|gb|EJT21723.1| S4 domain-containing protein [Bacillus anthracis str. UR-1]
Length = 255
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 100/206 (48%), Gaps = 12/206 (5%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE ++A+ +V +DFL P + M + + D+ G +AER R +
Sbjct: 15 VDKVLEW-KQAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDIAVQFDGATSRAERKRALI- 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ E AQ
Sbjct: 72 YPDYLVVNEEEFQVEGLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQI 130
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGF 257
+V E+ Y+ +L+ +G V VS + + L+ + + T+ +SLR+D + +
Sbjct: 131 VVAKEVVSYIEMNLQSIGKVKVSLSPVKGEKILQIQETWGEKSGTV-SSLRLDVMLAEML 189
Query: 258 KLSRSKLVNLIRYSSLASLVQISAKA 283
+SR K+ I+ LV+++ K
Sbjct: 190 HISRQKVQPFIK----NGLVKVNWKT 211
>gi|451343653|ref|ZP_21912724.1| hypothetical protein HMPREF9943_00949 [Eggerthia catenaformis OT
569 = DSM 20559]
gi|449337750|gb|EMD16907.1| hypothetical protein HMPREF9943_00949 [Eggerthia catenaformis OT
569 = DSM 20559]
Length = 247
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 94/207 (45%), Gaps = 9/207 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V+ IL+ +A + +L + F P ++S+++ + + GG+ AE R+ +
Sbjct: 12 VRKILDYVNQADKGKMIL-TKFFDPH--QQSIVSRVIGNRLSVHSFGGFINAENKRMLIC 68
Query: 141 HPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFL 199
H + D ++ L N F H D LG+++ GI RE IGDI E F
Sbjct: 69 HDYYEIVPDDFHISVLKADYNDSFGKLKHSDVLGALMNLGIKREVIGDIC---ESPLSFA 125
Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
+ E DY+ T L K+ SV + L + + F +SLR+D L S+ F++
Sbjct: 126 ICDENCDYIKTHLRKIKKSSVHFGEVNELIEIRNEFKNQVFYV--SSLRLDKLISSLFRI 183
Query: 260 SRSKLVNLIRYSSLASLVQISAKASAI 286
SR K I ++ QI + AS +
Sbjct: 184 SRIKANEAINSGNVKKNYQIISNASDV 210
>gi|323691967|ref|ZP_08106216.1| hypothetical protein HMPREF9475_01079 [Clostridium symbiosum
WAL-14673]
gi|355628022|ref|ZP_09049551.1| hypothetical protein HMPREF1020_03630 [Clostridium sp. 7_3_54FAA]
gi|323503976|gb|EGB19789.1| hypothetical protein HMPREF9475_01079 [Clostridium symbiosum
WAL-14673]
gi|354819990|gb|EHF04421.1| hypothetical protein HMPREF1020_03630 [Clostridium sp. 7_3_54FAA]
Length = 251
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 90/201 (44%), Gaps = 13/201 (6%)
Query: 74 DKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMM---ALEKLADVKAVAQGGYP 130
DK+ K I E+A R ++DFLT L E + L V + GGY
Sbjct: 3 DKDEQLLKKRISELAALCYQRDIRSYTDFLT---LNEQTIFHSMKRTLPPVTWLMGGGYE 59
Query: 131 QAER---CRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGD 187
AER C L E I+ A+ + F + +H DFLG+I+ GI+R IGD
Sbjct: 60 TAERKIVCFLPSYEDETADLPISILEAVPASPRFA-EALTHRDFLGAIMNLGISRSCIGD 118
Query: 188 IILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASL 247
I++ E G + ++A +LI L+ V + VSC T S AS
Sbjct: 119 ILMN-ENGCFIFCLEKMAPFLIQELKMVRHTQVSCRPATQAPAAAPNCETVSGSV--ASP 175
Query: 248 RVDALASAGFKLSRSKLVNLI 268
R+D++ S FK SRSK + I
Sbjct: 176 RLDSVISLVFKTSRSKTLPFI 196
>gi|423452799|ref|ZP_17429652.1| hypothetical protein IEE_01543 [Bacillus cereus BAG5X1-1]
gi|401139358|gb|EJQ46920.1| hypothetical protein IEE_01543 [Bacillus cereus BAG5X1-1]
Length = 255
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 98/205 (47%), Gaps = 10/205 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V ++E ++A+ +V +DFL P + M + + DV G P+AER R +
Sbjct: 15 VDKVIEW-KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVRFDGAMPEAERKRALI- 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P+ L + + V L I F H LG+ + G+ R+K GDI+LQ E AQ
Sbjct: 72 YPDYLELNEEEFQVEVLEIDYPSKFFTLEHRQILGAFMSLGLTRDKCGDILLQ-EDRAQI 130
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
V E+ Y+ +L+ +G + V+ + I + + + +SLR+D L +
Sbjct: 131 AVAKEVVSYIEMNLQSIGKMKVTLSPIQVEKVLRVGEKWGEKSGTVSSLRLDVLLAEMLH 190
Query: 259 LSRSKLVNLIRYSSLASLVQISAKA 283
+SR K+ LI+ LV+++ K
Sbjct: 191 ISRQKVQPLIK----GGLVKVNWKT 211
>gi|336395776|ref|ZP_08577175.1| S4 domain-containing protein [Lactobacillus farciminis KCTC 3681]
Length = 264
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 90/195 (46%), Gaps = 18/195 (9%)
Query: 100 SDFLTPPVLKESMMA---LEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAAL 155
+DFL L+E + + K D+ GG+ AER R V + D D +A
Sbjct: 40 TDFLN---LREQTILNNLINKYDDLYVHYFGGFGNAERVRGIVAPDYFVPQDSDFGIAMY 96
Query: 156 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 215
I F HG LGS+ G+G+ R++ GDII GE QF V +++Y+ ++K
Sbjct: 97 EIRYPEKFANLHHGQILGSLTGSGVERDRFGDIITDGE-NWQFFVFDSMSEYIEEQVKK- 154
Query: 216 GNVSVSCTRIPLLALEYEP---PRTKSFK--TIEASLRVDALASAGFKLSRSKLVNLIRY 270
+ +I L+ ++ P+ +S + SLR+D++ S + LSR L+ +
Sbjct: 155 ----IDPYKIHLIKKDFSEVLLPKDESVDETVLVQSLRLDSIISTVYDLSRQNSKALVDH 210
Query: 271 SSLASLVQISAKASA 285
+ ++ ASA
Sbjct: 211 GKVQINWVVNKNASA 225
>gi|163814735|ref|ZP_02206124.1| hypothetical protein COPEUT_00886 [Coprococcus eutactus ATCC 27759]
gi|158450370|gb|EDP27365.1| hypothetical protein COPEUT_00886 [Coprococcus eutactus ATCC 27759]
Length = 301
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 95/195 (48%), Gaps = 13/195 (6%)
Query: 86 EMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL 145
++A A ++ +++FL+ + +++L+ V GG ER ++ G+
Sbjct: 55 DLANAAYTQNRYTYTNFLSAADIDVFYSNMDELSFVGYKLFGGREGCERVMIAFGNESDC 114
Query: 146 TSDPD----IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL-----QGEKGA 196
+P IV A ++ F + +H DFLG+++ GI RE IGDI++ G+ A
Sbjct: 115 GYEPTFPIAIVKAAAVQDKFS-EDLNHRDFLGALMNLGIEREMIGDILVAESSKTGKHSA 173
Query: 197 QFLVVPE-LADYLITSLEKVGNVSVSCTRI-PLLALEYEPPRTKSFKTIEASLRVDALAS 254
++ E +ADY++ SL ++ + ++ C+ P E + + K I AS R DA+ +
Sbjct: 174 AYIFCAESIADYIVESLTRIRHTNMRCSICSPEDTGEIQLQK-KPMHIIAASARADAVTA 232
Query: 255 AGFKLSRSKLVNLIR 269
LSRS L R
Sbjct: 233 TITGLSRSNTSLLFR 247
>gi|116873458|ref|YP_850239.1| S4 domain-containing protein [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116742336|emb|CAK21460.1| S4 domain protein [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 258
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 83/186 (44%), Gaps = 8/186 (4%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 157
+DFL P + + ++ GG AER R + +P+ T ++ D +A I
Sbjct: 35 TDFLDPRQRYITETVIGGYDEINVQFFGGVAHAERRRALI-YPDYYTPTEADFEIALFHI 93
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
F +H LG+++ G+ R+ G+I L + Q LV + DYL LEK+G
Sbjct: 94 RYPVKFTTLTHQKILGTLMSLGMKRDIFGNI-LNNDNEWQLLVESSMKDYLTLQLEKIGK 152
Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSLASLV 277
V+V L Y P + +S+R+D + S +SR K L+ A LV
Sbjct: 153 VNVMLEETDLTNAVYAPVVWEEVGLTVSSMRLDVIISNAHHISRQKAKQLV----TAGLV 208
Query: 278 QISAKA 283
+++ K
Sbjct: 209 KVNWKT 214
>gi|423483488|ref|ZP_17460178.1| hypothetical protein IEQ_03266 [Bacillus cereus BAG6X1-2]
gi|401141039|gb|EJQ48594.1| hypothetical protein IEQ_03266 [Bacillus cereus BAG6X1-2]
Length = 255
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 99/205 (48%), Gaps = 10/205 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE ++A+ +V +DFL P + M + + D+ G P++ER R ++
Sbjct: 15 VDKVLEW-KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDIAVRFDGVMPESERKR-ALI 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ E AQ
Sbjct: 72 YPDYLELNEEEFQVEVLEIDYPSKFFTLEHRQILGAFMSLGLTREKCGDILLQ-EDRAQI 130
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
V E+ Y+ +L+ +G + V+ + I + + + +SLR+D L +
Sbjct: 131 AVAKEVVSYIEMNLQSIGKMKVTLSPIQVEQILQVSEKWGEKSGTVSSLRLDVLLAEMLH 190
Query: 259 LSRSKLVNLIRYSSLASLVQISAKA 283
+SR K+ LI+ LV+++ K
Sbjct: 191 ISRQKVQPLIK----NGLVKVNWKT 211
>gi|339497698|ref|ZP_08658674.1| cell division protein [Leuconostoc pseudomesenteroides KCTC 3652]
Length = 265
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 97/196 (49%), Gaps = 14/196 (7%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
++ +L+ ++A ++ + FL P + + +++++ GG AE R +
Sbjct: 20 IQQVLDWMKQADDDYRLVLTRFLNPREQYILQTLINRQSELQSYLYGGVAGAESQRAIIA 79
Query: 141 HPEALTSDPDI------VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEK 194
PE DI +A L++ F H LG+++ GI+R+ +GDI+ E+
Sbjct: 80 -PEVF----DIKLEDFGIALLTVQYPQKFATLHHATILGTLMHLGISRDVVGDILFDAEE 134
Query: 195 GA-QFLVVPELADYLITSLEKVGNVSVSCTRIPL-LALEYEPPRTKSFKTIEASLRVDAL 252
+ Q +V ++ Y+ ++ K+G V+ + +PL AL + F T+ +SLR+D +
Sbjct: 135 TSWQIIVDKKMVAYIQQTVTKIGRVAANLKELPLNEALPVLTNWQEQF-TLMSSLRLDVV 193
Query: 253 ASAGFKLSRSKLVNLI 268
S+ F+LSRS LI
Sbjct: 194 ISSIFQLSRSDTKTLI 209
>gi|393201812|ref|YP_006463654.1| hypothetical protein SSIL_3085 [Solibacillus silvestris StLB046]
gi|327441143|dbj|BAK17508.1| uncharacterized conserved protein [Solibacillus silvestris StLB046]
Length = 262
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 93/193 (48%), Gaps = 9/193 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
++ ++ R R +DFL P + ES+ +++ D+ +G + +AER R+
Sbjct: 16 IEQVIGWQREVEDRYAPKLTDFLDPRQRFIVESI--VQQSDDLHVFTEGIFEEAERKRML 73
Query: 139 VGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
+ ++ D +A S+ F H D LG++L G+ R K GDI L + Q
Sbjct: 74 IAPSYYEPAEADFQIAVYSLNYPTKFVQLRHPDVLGALLSIGLDRSKFGDIRL-ADNTVQ 132
Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLA--LEYEPPRTKSFKTIEASLRVDALASA 255
F + E++DY+ +L +G V VS + ++ E +S T+ +S+R+D + +
Sbjct: 133 FAIASEISDYVRANLTSIGKVKVSAEEMDPTTPFIQNEEQWVESSHTV-SSMRLDVVLAT 191
Query: 256 GFKLSRSKLVNLI 268
+SR K +LI
Sbjct: 192 IVNISRQKSQSLI 204
>gi|226224634|ref|YP_002758741.1| hypothetical protein Lm4b_02049 [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|386732771|ref|YP_006206267.1| hypothetical protein MUO_10410 [Listeria monocytogenes 07PF0776]
gi|406704815|ref|YP_006755169.1| RNA-binding S4 domain protein [Listeria monocytogenes L312]
gi|225877096|emb|CAS05808.1| Hypothetical protein of unknown function [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|384391529|gb|AFH80599.1| hypothetical protein MUO_10410 [Listeria monocytogenes 07PF0776]
gi|406361845|emb|CBY68118.1| RNA-binding S4 domain protein [Listeria monocytogenes L312]
Length = 258
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 84/186 (45%), Gaps = 8/186 (4%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 157
+DFL P + + ++ GG AER R + +P+ T ++ D +A I
Sbjct: 35 TDFLDPRQRFITETVIGGYDEINVQFFGGVAHAERRRALI-YPDYYTPTEADFEIALFHI 93
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
F +H LG+++ G+ R+ GDI+ G + Q LV + DYL LEK+G
Sbjct: 94 RYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGSE-WQLLVESTMKDYLTLQLEKIGK 152
Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSLASLV 277
V+V L Y P + +S+R+D + S +SR K L+ A LV
Sbjct: 153 VNVMLEETDLANAVYAPVVWEEMGLTVSSMRLDVIISNVHHISRQKAKQLVT----AGLV 208
Query: 278 QISAKA 283
+++ K
Sbjct: 209 KVNWKT 214
>gi|218133259|ref|ZP_03462063.1| hypothetical protein BACPEC_01124 [[Bacteroides] pectinophilus ATCC
43243]
gi|217992132|gb|EEC58136.1| S4 domain protein [[Bacteroides] pectinophilus ATCC 43243]
Length = 251
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 97/204 (47%), Gaps = 16/204 (7%)
Query: 74 DKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAE 133
D N + K E+AR++ ++ L +DFL+ P ++ +A + GG E
Sbjct: 2 DNNDQQLKKRFDELARKSYNQGIYLFTDFLSMP---DAAIACDSAPAGYVTLFGGTDGCE 58
Query: 134 RCRLSVGHPEALTSDPD----IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
R G+ E + D +V + F +H DFLG+++ GI R+ IGDI+
Sbjct: 59 RVMARFGNAEEFGYEEDFPIDVVMIEPLIKKFS-DELTHRDFLGALMNLGIERDVIGDIM 117
Query: 190 LQGEKGAQFLVVPELADYLITSLEKVGNVSVSC----TRIPLLALEYEPPRTKSFKTIEA 245
++ +K A ++ Y+ SL+KV + SV C T ++ E R + + +
Sbjct: 118 IR-DKTAYVFATRKIVPYIADSLDKVKHTSVKCRILSTEEITASVSVELERQ---ELVIS 173
Query: 246 SLRVDALASAGFKLSRSKLVNLIR 269
S R+DA+ S + +SRS+ + + R
Sbjct: 174 SERLDAVISKLYNMSRSQSIEMFR 197
>gi|118479118|ref|YP_896269.1| S4 domain-containing protein [Bacillus thuringiensis str. Al Hakam]
gi|167636417|ref|ZP_02394716.1| S4 domain protein [Bacillus anthracis str. A0442]
gi|170688819|ref|ZP_02880022.1| S4 domain protein [Bacillus anthracis str. A0465]
gi|196038619|ref|ZP_03105927.1| S4 domain protein [Bacillus cereus NVH0597-99]
gi|196045924|ref|ZP_03113153.1| S4 domain protein [Bacillus cereus 03BB108]
gi|225865879|ref|YP_002751257.1| S4 domain protein [Bacillus cereus 03BB102]
gi|254683393|ref|ZP_05147253.1| S4 domain protein [Bacillus anthracis str. CNEVA-9066]
gi|254721431|ref|ZP_05183220.1| S4 domain protein [Bacillus anthracis str. A1055]
gi|254739815|ref|ZP_05197508.1| S4 domain protein [Bacillus anthracis str. Kruger B]
gi|301055388|ref|YP_003793599.1| RNA-binding S4 domain-containing protein [Bacillus cereus biovar
anthracis str. CI]
gi|376267794|ref|YP_005120506.1| hypothetical protein bcf_19360 [Bacillus cereus F837/76]
gi|421639653|ref|ZP_16080244.1| S4- like RNA binding domain protein [Bacillus anthracis str. BF1]
gi|423550354|ref|ZP_17526681.1| hypothetical protein IGW_00985 [Bacillus cereus ISP3191]
gi|118418343|gb|ABK86762.1| S4 domain protein [Bacillus thuringiensis str. Al Hakam]
gi|167528159|gb|EDR90946.1| S4 domain protein [Bacillus anthracis str. A0442]
gi|170667174|gb|EDT17934.1| S4 domain protein [Bacillus anthracis str. A0465]
gi|196023364|gb|EDX62042.1| S4 domain protein [Bacillus cereus 03BB108]
gi|196030342|gb|EDX68941.1| S4 domain protein [Bacillus cereus NVH0597-99]
gi|225787031|gb|ACO27248.1| S4 domain protein [Bacillus cereus 03BB102]
gi|300377557|gb|ADK06461.1| RNA-binding S4 domain protein [Bacillus cereus biovar anthracis
str. CI]
gi|364513594|gb|AEW56993.1| Hypothetical protein, contains S4- like RNA binding domain
[Bacillus cereus F837/76]
gi|401189970|gb|EJQ97020.1| hypothetical protein IGW_00985 [Bacillus cereus ISP3191]
gi|403393318|gb|EJY90563.1| S4- like RNA binding domain protein [Bacillus anthracis str. BF1]
Length = 255
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 100/206 (48%), Gaps = 12/206 (5%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE ++A+ +V +DFL P + M + + D+ G +AER R +
Sbjct: 15 VDKVLEW-KQAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDIAVQFDGATSRAERKRALI- 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ E AQ
Sbjct: 72 YPDYLVVNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQI 130
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGF 257
+V E+ Y+ +L+ +G V VS + + L+ + + T+ +SLR+D + +
Sbjct: 131 VVAKEVVSYIEMNLQSIGKVKVSLSPVKGEKILQIQETWGEKSGTV-SSLRLDVMLAEML 189
Query: 258 KLSRSKLVNLIRYSSLASLVQISAKA 283
+SR K+ I+ LV+++ K
Sbjct: 190 HISRQKVQPFIK----NGLVKVNWKT 211
>gi|49478438|ref|YP_037959.1| S4 domain-containing protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|49329994|gb|AAT60640.1| S4 domain protein [Bacillus thuringiensis serovar konkukian str.
97-27]
Length = 255
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 99/206 (48%), Gaps = 12/206 (5%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE ++A+ +V +DFL P + M + + D+ G AER R +
Sbjct: 15 VDKVLEW-KQAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDIAVQFDGATSHAERKRALI- 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ E AQ
Sbjct: 72 YPDYLVVNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQI 130
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGF 257
+V E+ Y+ +L+ +G V VS + + L+ + + T+ +SLR+D + +
Sbjct: 131 VVAKEVVSYIEMNLQSIGKVKVSLSPVKGEKILQIQETWGEKSGTV-SSLRLDVMLAEML 189
Query: 258 KLSRSKLVNLIRYSSLASLVQISAKA 283
+SR K+ I+ LV+++ K
Sbjct: 190 HISRQKVQPFIK----NGLVKVNWKT 211
>gi|339301993|ref|ZP_08651066.1| S4 domain-containing protein YlmH [Streptococcus agalactiae ATCC
13813]
gi|319744574|gb|EFV96927.1| S4 domain-containing protein YlmH [Streptococcus agalactiae ATCC
13813]
Length = 262
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 6/191 (3%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ I +A+ + + ++FL P K LE+ G Y Q E ++ +
Sbjct: 18 INKIDHLAQYVENTYSFITTEFLNPREFKILESVLERRGS-HYYTSGQYFQTEYVKVIIA 76
Query: 141 HPEALTSD-PDI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQ 197
PE D D ++ + I N F +H +G++L G+ R +GDI+++ E AQ
Sbjct: 77 -PEYYQLDMVDFNLSLIEIKYNAKFNHLTHAKIMGTLLNYLGVKRSILGDILVE-EGCAQ 134
Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
LV ++ ++L+ S+ K+G SV +PL + I +SLR+D + +
Sbjct: 135 VLVDSQMTNHLVHSVTKIGTASVQLAEVPLSKFLTPKQDIQKLTVIASSLRLDKILATIL 194
Query: 258 KLSRSKLVNLI 268
K+SR++ LI
Sbjct: 195 KISRTQSTKLI 205
>gi|410495317|ref|YP_006905163.1| RNA-binding protein ylmH [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
gi|410440477|emb|CCI63105.1| Putative RNA-binding protein ylmH [Streptococcus dysgalactiae
subsp. equisimilis AC-2713]
Length = 263
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 89/189 (47%), Gaps = 12/189 (6%)
Query: 86 EMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHP 142
+M R S + +DFL P +LK +L D+K + Y +E R+ V
Sbjct: 24 DMINRVDSHYLLEVTDFLNPREITILK----SLVAPTDLKVFSSTDYYPSEYGRVIVAPD 79
Query: 143 EALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFL 199
+ D +A + IT F +HG LG+++ GI R +GDI + E G AQ +
Sbjct: 80 YYDLDEADFQIALVEITYQAKFNQLTHGQILGTLINELGIKRSLLGDIFV--ETGYAQLM 137
Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
+ +L Y++T++ K+ SVS IPL + + +SLR+D L + K
Sbjct: 138 INRQLLGYVLTTISKIARASVSLKEIPLNQRINSSNDVQLVDIMVSSLRLDRLVATVLKK 197
Query: 260 SRSKLVNLI 268
SR++ + LI
Sbjct: 198 SRAQAMTLI 206
>gi|224541714|ref|ZP_03682253.1| hypothetical protein CATMIT_00886 [Catenibacterium mitsuokai DSM
15897]
gi|224525318|gb|EEF94423.1| S4 domain protein [Catenibacterium mitsuokai DSM 15897]
Length = 248
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 94/194 (48%), Gaps = 14/194 (7%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAERCR 136
E V IL+ +A + ++ + FL P + ES++ E +K A GG+ AE R
Sbjct: 10 EFVSKILDYKDQALYSQRMILTQFLDPHQQSIVESVIGHE----LKVEADGGFDGAENKR 65
Query: 137 LSVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEK 194
+ + P+ +P+ V + N F H D LG+++ GI R+ IGDI E+
Sbjct: 66 VLIA-PDFYEFEPEDFKVTVFRVDYNDTFGKLKHSDVLGALMHLGIKRQCIGDI---NEE 121
Query: 195 GAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALAS 254
F + E +DY+ +L ++ S+ + + TK+ I +SLR+D + +
Sbjct: 122 PLSFACIKENSDYIRMNLTRIKRSSIHLVEMEERLSIHADTYTKT--VIVSSLRLDKMVA 179
Query: 255 AGFKLSRSKLVNLI 268
A F +SR+K V+ I
Sbjct: 180 ALFGISRNKAVDAI 193
>gi|406664686|ref|ZP_11072461.1| photosystem II S4 domain protein [Bacillus isronensis B3W22]
gi|405387534|gb|EKB46958.1| photosystem II S4 domain protein [Bacillus isronensis B3W22]
Length = 262
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 94/195 (48%), Gaps = 13/195 (6%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
++ ++ R R +DFL P + ES+ +++ D+ +G + +AER R+
Sbjct: 16 IEQVIGWQREVEDRYAPKLTDFLDPRQRFIVESI--VQQSDDLHVFTEGIFEEAERKRML 73
Query: 139 VGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
+ ++ D +A S+ F H D LG++L G+ R K GDI L + Q
Sbjct: 74 IAPSYYEPAEADFQIAVYSLNYPTKFVQLRHPDVLGALLSIGLDRSKFGDIRL-ADNTVQ 132
Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRI----PLLALEYEPPRTKSFKTIEASLRVDALA 253
F + E++DY+ +L +G V VS + P ++ E +S T+ +S+R+D +
Sbjct: 133 FAIASEISDYVRANLTSIGKVKVSAEEMDPNTPF--IQNEEQWVESSHTV-SSMRLDVVL 189
Query: 254 SAGFKLSRSKLVNLI 268
+ +SR K +LI
Sbjct: 190 ATIVNISRQKSQSLI 204
>gi|440781913|ref|ZP_20960141.1| RNA binding protein [Clostridium pasteurianum DSM 525]
gi|440220631|gb|ELP59838.1| RNA binding protein [Clostridium pasteurianum DSM 525]
Length = 258
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 80/174 (45%), Gaps = 5/174 (2%)
Query: 97 VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHP-EALTSDPDIVAAL 155
+ ++F T + E + L L VK G + +ER ++ + + P + +
Sbjct: 35 IYTNEFYTTDICIE-VKKLSTLLGVKIETYGIFENSERNMMAFSYEGDNYCYFP--LKLI 91
Query: 156 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 215
I F SH D+LG+I+ G+ R K GD+I+ E V E+A Y++ +L +
Sbjct: 92 KIENKSKFNKLSHKDYLGAIMSMGVNRNKFGDLIVI-ENSCYVAVSEEIASYILNNLNSI 150
Query: 216 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIR 269
G + + + L + + I +SLR+D L S+ +SR++ V LI
Sbjct: 151 GKCTCNICELELTKSNIPKIKFEELNIIVSSLRLDCLISSICNISRNRAVELIN 204
>gi|392957451|ref|ZP_10322974.1| hypothetical protein A374_11955 [Bacillus macauensis ZFHKF-1]
gi|391876414|gb|EIT85011.1| hypothetical protein A374_11955 [Bacillus macauensis ZFHKF-1]
Length = 257
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 81/185 (43%), Gaps = 4/185 (2%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ +L+ R V +DFL P + + K AD GG +ER R +
Sbjct: 15 IDQVLQWKNEVEERFSVKLTDFLDPREQDIATSIIGKDADSSLSFWGGSSHSERRRALIH 74
Query: 141 HP--EALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
H E SD ++ + I F H D LG+++ G+ R K GDI+ + Q
Sbjct: 75 HAYLEPKPSDFEL-SVFEIQYPTKFSSLEHRDVLGALMNIGVKRSKFGDIV-HSQDRLQV 132
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
V E+ D++ ++ K+G SV+ + A + R +SLR+D + + +
Sbjct: 133 TVANEIKDFIAMNVTKIGRTSVTLQLVEEGAYLHPEERYVEKAGTVSSLRLDVMIAEVYG 192
Query: 259 LSRSK 263
LSRSK
Sbjct: 193 LSRSK 197
>gi|257439837|ref|ZP_05615592.1| putative S4 domain protein [Faecalibacterium prausnitzii A2-165]
gi|257197746|gb|EEU96030.1| S4 domain protein [Faecalibacterium prausnitzii A2-165]
Length = 273
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 92/194 (47%), Gaps = 7/194 (3%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA---QGGYPQAERCRL 137
++H+ ++AR A R +S FL+ + AL + ADV +GG+P AER L
Sbjct: 27 MRHVEDLARAAEGRGIARYSGFLSDREQDLARAALNR-ADVPESDHHFEGGWPGAERKLL 85
Query: 138 SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEK-GA 196
+ + P L+ G SH D+LGS++G + RE +GDI+L + G
Sbjct: 86 CLEPEGCYPASPLCCVKLTCRTLSGAALPSHKDYLGSLMGLELRREALGDIVLPADTPGT 145
Query: 197 QFLVVPELADYLIT-SLEKVGNVSVSCTRIPLLAL-EYEPPRTKSFKTIEASLRVDALAS 254
++ E A LI L +VG V+ T + L + E+ K+ +SLR+DA+ +
Sbjct: 146 AYVFALETAGELICRELLQVGRTEVTATLLSLDEVPEFPQAERKTQTATVSSLRLDAVLA 205
Query: 255 AGFKLSRSKLVNLI 268
A SR + I
Sbjct: 206 AMLHCSRGQACEWI 219
>gi|404408464|ref|YP_006691179.1| RNA-binding S4 domain-containing protein [Listeria monocytogenes
SLCC2376]
gi|404242613|emb|CBY64013.1| RNA-binding S4 domain protein [Listeria monocytogenes SLCC2376]
Length = 259
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 84/186 (45%), Gaps = 8/186 (4%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 157
+DFL P + + ++ GG AER R + +P+ T ++ D ++ I
Sbjct: 36 TDFLDPRQRFITETVIGGYDEINVQFFGGVAHAERRRALI-YPDYYTPTEADFEISLFHI 94
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
F +H LG+++ G+ R+ GDI+ G + Q LV + DYL LEK+G
Sbjct: 95 RYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGTE-WQLLVESTMKDYLTLQLEKIGK 153
Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSLASLV 277
V+V L Y P + +S+R+D + S +SR K L+ A LV
Sbjct: 154 VNVMLEETDLANAIYAPVVWEEIGLTVSSMRLDVIISNAHHISRQKAKQLVT----AGLV 209
Query: 278 QISAKA 283
+++ K
Sbjct: 210 KVNWKT 215
>gi|290892174|ref|ZP_06555170.1| S4 domain-containing protein [Listeria monocytogenes FSL J2-071]
gi|290558297|gb|EFD91815.1| S4 domain-containing protein [Listeria monocytogenes FSL J2-071]
Length = 258
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 84/186 (45%), Gaps = 8/186 (4%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 157
+DFL P + + ++ GG AER R + +P+ T ++ D ++ I
Sbjct: 35 TDFLDPRQRFITETVIGGYDEINVQFFGGVAHAERRRALI-YPDYYTPTEADFEISLFHI 93
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
F +H LG+++ G+ R+ GDI+ G + Q LV + DYL LEK+G
Sbjct: 94 RYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGTE-WQLLVESTMKDYLTLQLEKIGK 152
Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSLASLV 277
V+V L Y P + +S+R+D + S +SR K L+ A LV
Sbjct: 153 VNVMLEETDLANAIYAPVVWEEIGLTVSSMRLDVIISNAHHISRQKAKQLVT----AGLV 208
Query: 278 QISAKA 283
+++ K
Sbjct: 209 KVNWKT 214
>gi|116334045|ref|YP_795572.1| cell division protein [Lactobacillus brevis ATCC 367]
gi|116099392|gb|ABJ64541.1| Cell division protein, S4-like domain [Lactobacillus brevis ATCC
367]
Length = 259
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 80/175 (45%), Gaps = 13/175 (7%)
Query: 100 SDFLTPPVLKESMMA--LEKLADVKAVAQGGYPQAE--RCRLSVGHPEALTSDPDIVAAL 155
++FL P ++ +A L + ADV GGY AE R + E + D ++ A L
Sbjct: 36 TNFLNP---RQVYIATTLAQRADVPVRFNGGYAHAEMQRALFYPDYYEPVAKDFEL-AVL 91
Query: 156 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE--LADYLITSLE 213
+ F H LG++LG GI RE +GDI+ G + VV E +ADYL ++
Sbjct: 92 RVDYPVKFATLHHSQILGTLLGAGIEREILGDIL---TDGTTWQVVTEAGMADYLTGQVD 148
Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
++G V L + + +SLR+D + GF LSR + LI
Sbjct: 149 RIGRVKARLQLADFADLVHPLSEWTAEGATLSSLRLDNIVGTGFHLSRHRAKELI 203
>gi|300361463|ref|ZP_07057640.1| S4 domain protein [Lactobacillus gasseri JV-V03]
gi|300354082|gb|EFJ69953.1| S4 domain protein [Lactobacillus gasseri JV-V03]
Length = 265
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 78/177 (44%), Gaps = 5/177 (2%)
Query: 94 RREVLHSDFLTPPVLKESMMALEKLADV-KAVAQGGYPQAERCRLSV-GHPEALTSDPDI 151
+ E + +DFL P +E + E + + + GG+ AE+ RL + +A
Sbjct: 34 KNEPILTDFLNP---REQYIFREIVGGYAQLYSFGGFSNAEKKRLLLCDWIQAYEPSMFK 90
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
+ I + +H LG + GI + GDII QF V EL +Y +
Sbjct: 91 ITLFEIAYPHKWAKLTHSQILGVLTHLGIKLDTFGDIINDENGTWQFFVKTELKNYFLEQ 150
Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+ +VG V PL + + +K I SLR+DA+ SA LSRS++ +I
Sbjct: 151 VTRVGRTKVKLHEFPLSKVLVQEDDSKELSVITISLRLDAVVSAVTNLSRSQVKKMI 207
>gi|291550387|emb|CBL26649.1| Uncharacterized conserved protein, contains S4-like domain
[Ruminococcus torques L2-14]
Length = 266
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 90/201 (44%), Gaps = 24/201 (11%)
Query: 85 LEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ----GGYPQAERCRLSVG 140
+E++R A R V +SDFL L L K ++ GGY AER +++
Sbjct: 18 IELSRIAFEREIVTYSDFLNL----NDQNILHTLPKNKLYSRYVLFGGYDMAER-QMAAF 72
Query: 141 HPEALT-----SD--------PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGD 187
PEAL+ SD P + + +H DFLGSIL GI R K GD
Sbjct: 73 IPEALSLRYGVSDITPKEIDYPFCAVKIEPKNKRFSEDLTHRDFLGSILNLGIDRSKTGD 132
Query: 188 IILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASL 247
I++ E A + +L + L +V + + + I L + Y P + K +S+
Sbjct: 133 ILVT-EDSALLFINKDLVSVVTEDLTRVRHTVIDSSVINLDMINYTPD-LQQIKGTVSSV 190
Query: 248 RVDALASAGFKLSRSKLVNLI 268
R+D+L F SRSKL LI
Sbjct: 191 RLDSLLPLAFSSSRSKLSGLI 211
>gi|429765555|ref|ZP_19297840.1| S4 domain protein [Clostridium celatum DSM 1785]
gi|429186006|gb|EKY26969.1| S4 domain protein [Clostridium celatum DSM 1785]
Length = 255
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 102/229 (44%), Gaps = 20/229 (8%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
DD+LK K IE+V + E A + + F P + + + A
Sbjct: 5 DDILKNFS-KEDIEDVIKVYECMNIAYLKDIPTFTKFFCKPNIWMYFIKEFNSNNFSVKA 63
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
+ G + +R LS + + S P L I+ + F +H D+LG+++ G+ R+K+
Sbjct: 64 ECGLDEGDRKILSFNN---IYSIPYPYKILKISNSSKFNKLTHRDYLGALMALGLERDKL 120
Query: 186 GDIILQGEKGAQFLVVP---ELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFK- 241
GD+ + + + +VP ELADY+ T L+ V V I E + P+ +FK
Sbjct: 121 GDLRVNDD----YAIVPVYEELADYICTELKLVNKAPVKVCEI----FEEDLPKA-NFKE 171
Query: 242 --TIEASLRVDALASAGFKLSRSKLVNLIRYSS-LASLVQISAKASAIR 287
I SLR+D S +SR K + LI + L ++ K+ I+
Sbjct: 172 ETIIIPSLRLDNFVSKLSNVSRGKAITLIDTNKVLVDYAKVKGKSQEIK 220
>gi|227893342|ref|ZP_04011147.1| ribosomal protein S4e [Lactobacillus ultunensis DSM 16047]
gi|227864757|gb|EEJ72178.1| ribosomal protein S4e [Lactobacillus ultunensis DSM 16047]
Length = 266
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 82/179 (45%), Gaps = 9/179 (5%)
Query: 94 RREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD--I 151
+ E++ +DFL P K +++ D GGYP AE+ R+ + E L+ P
Sbjct: 34 KHELILTDFLDPG--KRAILKTIVGNDAFTQEYGGYPNAEKKRVYLSE-EWLSLRPSDYQ 90
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
+ I F +H LG++ +GI + GDI+ G+ QFL EL ++
Sbjct: 91 IQPYEIEYPQKFMQINHSAILGTLANSGINTDTFGDILTDGKGKWQFLAKKELTEFFEEQ 150
Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE--ASLRVDALASAGFKLSRSKLVNLI 268
+ ++G V P+ E P S + E AS+R+DA+ S K SR ++ +I
Sbjct: 151 ITRIGKAQVKLK--PITFKEILIPEDDSVERTEIMASMRIDAILSGISKQSRGQIQKMI 207
>gi|386737720|ref|YP_006210901.1| S4 domain-containing protein [Bacillus anthracis str. H9401]
gi|384387572|gb|AFH85233.1| S4 domain protein [Bacillus anthracis str. H9401]
Length = 241
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 99/203 (48%), Gaps = 12/203 (5%)
Query: 84 ILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
+LE ++A+ +V +DFL P + M + + D+ G +AER R + +P+
Sbjct: 4 VLEW-KQAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDIAVQFDGATSRAERKRALI-YPD 60
Query: 144 ALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVV 201
L + + V L I F H LG+ + G+ REK GDI+LQ E AQ +V
Sbjct: 61 YLVVNEEEFQVEGLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQIVVA 119
Query: 202 PELADYLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGFKLS 260
E+ Y+ +L+ +G V VS + + L+ + + T+ +SLR+D + + +S
Sbjct: 120 KEVVSYIEMNLQSIGKVKVSLSPVKGEKILQIQETWGEKSGTV-SSLRLDVMLAEMLHIS 178
Query: 261 RSKLVNLIRYSSLASLVQISAKA 283
R K+ I+ LV+++ K
Sbjct: 179 RQKVQPFIK----NGLVKVNWKT 197
>gi|422852130|ref|ZP_16898800.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK150]
gi|325694117|gb|EGD36035.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK150]
Length = 261
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 86/189 (45%), Gaps = 10/189 (5%)
Query: 85 LEMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG- 140
L++ +R + FL P +LK + K DV+ A + +E R+ V
Sbjct: 21 LKLLQRVQDTYAFETTSFLNPHQVSILKN----IGKQYDVQVFASTDFFPSELARVLVAP 76
Query: 141 HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFL 199
L D ++ L I+ F SH +G++L GI R GDI++ G++ AQ
Sbjct: 77 SYYQLNMDDFELSLLEISYASKFYKISHSQIMGTLLNQLGIERRTFGDILVVGDR-AQLF 135
Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
V LA Y I + K+ + V + E + + + + +SLR+D L ++ FKL
Sbjct: 136 VDKRLAQYFIDHVSKIAKMPVKLKEVSFAEQLKEQKQAVTREILASSLRLDKLVASTFKL 195
Query: 260 SRSKLVNLI 268
SRS+ LI
Sbjct: 196 SRSQAAQLI 204
>gi|407977672|ref|ZP_11158509.1| hypothetical protein BA1_00690 [Bacillus sp. HYC-10]
gi|407415925|gb|EKF37506.1| hypothetical protein BA1_00690 [Bacillus sp. HYC-10]
Length = 258
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 101/208 (48%), Gaps = 12/208 (5%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +L + A + + +DFL P + ++ ++ + GGY +AER R +
Sbjct: 16 VDQVLGWKKIALDQYRLKLTDFLDPREQFITQSVIQHSDELGIMFFGGYEKAERKRALI- 74
Query: 141 HPEALTSDPDI----VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
+P+ L +P I ++ + F H LGS++GTG+ R+K GD++ +
Sbjct: 75 YPDYL--EPSIQDFELSYFQVNYAKKFISIEHPKLLGSLIGTGLKRQKFGDLLFLDD-DV 131
Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
+F+ ++AD++ L VG SVS I ++ +T + +SLR+DA+ +A
Sbjct: 132 KFICTSDVADFVRAQLTHVGRASVSLEEISQTDIKPVISKTDIKEDTISSLRLDAVCAAV 191
Query: 257 FKLSRSKLVNLIRYSSLASLVQISAKAS 284
+ SR K L++ LV+++ K +
Sbjct: 192 SRQSRQKAQLLVK----NGLVKVNWKVT 215
>gi|319649646|ref|ZP_08003802.1| hypothetical protein HMPREF1013_00406 [Bacillus sp. 2_A_57_CT2]
gi|317398808|gb|EFV79490.1| hypothetical protein HMPREF1013_00406 [Bacillus sp. 2_A_57_CT2]
Length = 257
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 4/166 (2%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDP-DI-VAALSI 157
+DFL P + + + A + GG P AER R + P+ SD D + +
Sbjct: 34 TDFLDPREQQILKSVIGQHAGILFALFGGTPNAERKRALI-FPDYYESDEGDFQIRLFEL 92
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
F H LGS++ G+ R K GDI+ + ++ QF E+ DY+ L+ +G
Sbjct: 93 EYPKKFVTIEHPQVLGSLMSLGLKRGKFGDILFEDDR-IQFFAAQEIEDYISLQLQSIGR 151
Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 263
SVS ++P K +SLR+D + SA + +SR K
Sbjct: 152 ASVSLKKLPFSEAIQSAEVWKESSITSSSLRLDTVISAIYNISRQK 197
>gi|418576429|ref|ZP_13140575.1| hypothetical protein SSME_16310 [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
gi|379325491|gb|EHY92623.1| hypothetical protein SSME_16310 [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
Length = 259
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 6/196 (3%)
Query: 75 KNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER 134
K E + +++ RA+ + + + FL P + D++ GG P AER
Sbjct: 12 KEEHELIDQLIDKCNRANDQYSPILTPFLDPRGQYIMNVVAGSFEDLEVTFYGG-PFAER 70
Query: 135 CRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKIGDIILQG 192
R + P D + + I ++ F H LG+I+ GI R+++GDI++
Sbjct: 71 KRAMIA-PSYFQPDAEAFEIVLIEIDYPQKFVTLQHQHILGTIMSLGIERDQLGDIVV-- 127
Query: 193 EKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDAL 252
+ QF + +L Y+I L K+ SV IP+ + +SF+T + LR+D +
Sbjct: 128 DDRIQFTLTKQLESYIILELTKIKGASVKLNSIPIKDMIQSKEHWQSFETTVSGLRLDVV 187
Query: 253 ASAGFKLSRSKLVNLI 268
+ SRS LI
Sbjct: 188 LKEMVRKSRSIAKQLI 203
>gi|228916535|ref|ZP_04080101.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228935213|ref|ZP_04098039.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228824378|gb|EEM70184.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228843114|gb|EEM88196.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 241
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 97/200 (48%), Gaps = 15/200 (7%)
Query: 89 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
++A+ +V +DFL P + M + + D+ G +AER R + +P+ L +
Sbjct: 8 KQAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDIAVQFDGATSRAERKRALI-YPDYLVVN 65
Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 206
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 66 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQIVVAKEVVS 124
Query: 207 YLITSLEKVGNVSVSCTRIPLLA---LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 263
Y+ +L+ +G V VS + P+ L+ + + T+ +SLR+D + + +SR K
Sbjct: 125 YIEMNLQSIGKVKVSLS--PVQGEKILQIQETWGEKSGTV-SSLRLDVMLAEMLHISRQK 181
Query: 264 LVNLIRYSSLASLVQISAKA 283
+ I+ LV+++ K
Sbjct: 182 VQPFIK----NGLVKVNWKT 197
>gi|422881776|ref|ZP_16928232.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK355]
gi|332363499|gb|EGJ41281.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK355]
Length = 261
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 85/195 (43%), Gaps = 10/195 (5%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERC 135
E + LE+ +R + FL P +LK + K DV+ A Y +E
Sbjct: 15 EFIDRSLELLQRVQDTYAFETTSFLNPHQVSILKN----IGKQYDVQVFASSDYFPSELA 70
Query: 136 RLSVG-HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGE 193
R+ V L D ++ L I+ F SH +G++L GI R GDI++ E
Sbjct: 71 RVLVAPSYYQLNMDDFELSLLEISYASKFYKISHSQIMGTLLNQLGIERRTFGDILV-IE 129
Query: 194 KGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALA 253
AQ V LA Y I + K+ + V + E + + + +SLR+D L
Sbjct: 130 DRAQLFVDKRLAQYFIDHVSKIAKMPVKLKEVSFAEQLKEQKQAVTRDILVSSLRLDKLV 189
Query: 254 SAGFKLSRSKLVNLI 268
++ FKLSRS+ LI
Sbjct: 190 ASTFKLSRSQAAQLI 204
>gi|167745612|ref|ZP_02417739.1| hypothetical protein ANACAC_00304 [Anaerostipes caccae DSM 14662]
gi|167654924|gb|EDR99053.1| S4 domain protein [Anaerostipes caccae DSM 14662]
Length = 250
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 94/198 (47%), Gaps = 19/198 (9%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMAL-----EKLADVKAVAQGGYPQAERCR 136
K + E+A+ A ++S + P L E +L ++L+ A GG+ +RC
Sbjct: 8 KRLEELAQTA-----FMNSVYTHTPFLSEREQSLFHEMRQELSFADASLYGGHEDYDRCI 62
Query: 137 LSVGHPEALTSDPDI-VAALSITGNFG--FQPCSHGDFLGSILGTGIAREKIGDIIL-QG 192
+ G E + +I +A I+ F + +H D+LG+++ GI R +IGDI++ G
Sbjct: 63 VVFGSKEMFGYEGEIPLACAKISPLFKKFAETLTHRDYLGALMNLGIERNQIGDILISDG 122
Query: 193 EKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEY-EPPRTKSFKTIEASLRVDA 251
E A +A++L L KV N V + + Y + TK +S R+DA
Sbjct: 123 E--AYVFCFRHMAEFLCRELTKVRNTQVETVGVDFKEIHYWQEYSTKD--GFVSSPRLDA 178
Query: 252 LASAGFKLSRSKLVNLIR 269
L F LSRSK ++L +
Sbjct: 179 LVGLAFGLSRSKALSLFQ 196
>gi|229092943|ref|ZP_04224076.1| RNA-binding S4 domain protein [Bacillus cereus Rock3-42]
gi|229123411|ref|ZP_04252615.1| RNA-binding S4 domain protein [Bacillus cereus 95/8201]
gi|229186138|ref|ZP_04313307.1| RNA-binding S4 domain protein [Bacillus cereus BGSC 6E1]
gi|228597314|gb|EEK54965.1| RNA-binding S4 domain protein [Bacillus cereus BGSC 6E1]
gi|228660187|gb|EEL15823.1| RNA-binding S4 domain protein [Bacillus cereus 95/8201]
gi|228690447|gb|EEL44231.1| RNA-binding S4 domain protein [Bacillus cereus Rock3-42]
Length = 241
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 96/198 (48%), Gaps = 11/198 (5%)
Query: 89 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
++A+ +V +DFL P + M + + D+ G +AER R + +P+ L +
Sbjct: 8 KQAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDIAVQFDGATSRAERKRALI-YPDYLVVN 65
Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 206
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 66 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQIVVAKEVVS 124
Query: 207 YLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 265
Y+ +L+ +G V VS + + L+ + + T+ +SLR+D + + +SR K+
Sbjct: 125 YIEMNLQSIGKVKVSLSPVKGEKILQIQETWGEKSGTV-SSLRLDVMLAEMLHISRQKVQ 183
Query: 266 NLIRYSSLASLVQISAKA 283
I+ LV+++ K
Sbjct: 184 PFIK----NGLVKVNWKT 197
>gi|225572136|ref|ZP_03781000.1| hypothetical protein RUMHYD_00430 [Blautia hydrogenotrophica DSM
10507]
gi|225040402|gb|EEG50648.1| S4 domain protein [Blautia hydrogenotrophica DSM 10507]
Length = 254
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 101/204 (49%), Gaps = 15/204 (7%)
Query: 74 DKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAE 133
DK+ + E K + ++A RA +R VL++DFL L + + V GGY AE
Sbjct: 2 DKDLLFE-KRMKDLASRAYNRDIVLYTDFLNLDELHKIHSLISGSLPVTVCTFGGYDLAE 60
Query: 134 RCRLSVGHPEALTSDPDIVAALSITGNFGFQPCS--------HGDFLGSILGTGIAREKI 185
R +++ P+AL+ + + + I QP S H D+LG++L G+ R +
Sbjct: 61 R-QMAAFLPDALSYLMEEILSYPIVC-LKIQPLSLKFSEKLSHRDYLGALLNLGLERSML 118
Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEP-PRTKSFKTIE 244
GD+++ E GA +A ++ +L +V + +V ++ + +E P P+ + +
Sbjct: 119 GDLLID-ETGAYCFCKETMAGFIQDNLTRVRHTAVLTVQV--MEMEELPQPKFREIQGTV 175
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
S+R+D L + F SRS++ I
Sbjct: 176 PSIRLDVLIALAFGESRSRITPFI 199
>gi|222153413|ref|YP_002562590.1| hypothetical protein SUB1286 [Streptococcus uberis 0140J]
gi|222114226|emb|CAR42803.1| conserved hypothetical protein [Streptococcus uberis 0140J]
Length = 263
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 98/208 (47%), Gaps = 8/208 (3%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
++ +++ RR + +DFL P + E + L ++ + + E R+ +
Sbjct: 19 IEKMMDQLRRVEDNYLLHVTDFLNPRQI-EIVKILSASMNITCFSSSDHYHTEYGRVILA 77
Query: 141 HPEALTSDP---DIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGA 196
P+ DP DI + + I+ + F +H LG+++ GI R IGDI++ + A
Sbjct: 78 -PDYYQLDPLDYDI-SLVEISYHSKFNTLTHAQILGTLINELGIKRSMIGDILVH-DGFA 134
Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
Q +V + Y + +++K+ VSV+ I L +L +SLR+D L ++
Sbjct: 135 QLMVNRQFLHYFLGNIQKIARVSVNLKEIDLNSLLLVQKEESLIDITLSSLRIDRLIASV 194
Query: 257 FKLSRSKLVNLIRYSSLASLVQISAKAS 284
KLSRS+ + L+ + +I K+S
Sbjct: 195 LKLSRSQAIKLVESEKVKVNYRIITKSS 222
>gi|228940986|ref|ZP_04103544.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228973917|ref|ZP_04134492.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228980506|ref|ZP_04140816.1| RNA-binding S4 domain protein [Bacillus thuringiensis Bt407]
gi|384187958|ref|YP_005573854.1| RNA binding protein [Bacillus thuringiensis serovar chinensis
CT-43]
gi|410676273|ref|YP_006928644.1| putative RNA-binding protein YlmH [Bacillus thuringiensis Bt407]
gi|452200339|ref|YP_007480420.1| hypothetical protein H175_ch3960 [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|228779326|gb|EEM27583.1| RNA-binding S4 domain protein [Bacillus thuringiensis Bt407]
gi|228785783|gb|EEM33787.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228818665|gb|EEM64732.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|326941667|gb|AEA17563.1| RNA binding protein [Bacillus thuringiensis serovar chinensis
CT-43]
gi|409175402|gb|AFV19707.1| putative RNA-binding protein YlmH [Bacillus thuringiensis Bt407]
gi|452105732|gb|AGG02672.1| hypothetical protein H175_ch3960 [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 255
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 99/208 (47%), Gaps = 16/208 (7%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE ++ + +V +DFL P + M + + D G P AER R +
Sbjct: 15 VDKVLEW-KQTAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDGAVQFGGATPNAERKRALI- 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ E AQ
Sbjct: 72 YPDYLELNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQI 130
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRI---PLLALEYEPPRTKSFKTIEASLRVDALASA 255
+V E+ Y+ +L+ +G V VS + + +L + +E KS +SLR+D + +
Sbjct: 131 VVAKEIVSYIEMNLQAIGKVKVSLSAVQGEQILQI-HETWGEKSGTV--SSLRLDVMLAE 187
Query: 256 GFKLSRSKLVNLIRYSSLASLVQISAKA 283
LSR K+ I+ LV+++ K
Sbjct: 188 MLHLSRQKVQPFIK----NGLVKVNWKT 211
>gi|373469182|ref|ZP_09560390.1| S4 domain protein [Lachnospiraceae bacterium oral taxon 082 str.
F0431]
gi|371764861|gb|EHO53227.1| S4 domain protein [Lachnospiraceae bacterium oral taxon 082 str.
F0431]
Length = 249
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 8/183 (4%)
Query: 85 LEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER---CRLSVGH 141
L++AR A + V HS FL M +L +VK++ GGY +AER C
Sbjct: 13 LDLARNAYFKNIVTHSTFLNLYEQTIFEMIQNELPNVKSIMFGGYSEAERKVVCFYCDEK 72
Query: 142 PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVV 201
PE + + + F +H DFLG+I+ GI R IGDI + + A + +
Sbjct: 73 PEF--DMLEYIRVAPVNKKFA-DELTHRDFLGAIMNLGIERHMIGDICIV-DNVAHIITL 128
Query: 202 PELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSR 261
+AD +I L V + V + + L+ R + K S R+D++ + + +SR
Sbjct: 129 KSMADTIINELGTVKHTKVVLNKESIENLK-TVNRVEYKKINIPSERLDSVIGSIYNISR 187
Query: 262 SKL 264
SK+
Sbjct: 188 SKV 190
>gi|404418421|ref|ZP_11000188.1| S4 domain-containing protein YlmH [Staphylococcus arlettae CVD059]
gi|403489014|gb|EJY94592.1| S4 domain-containing protein YlmH [Staphylococcus arlettae CVD059]
Length = 240
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 89/184 (48%), Gaps = 12/184 (6%)
Query: 84 ILEMARRASSRREVLHSDFLTPP---VLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+L+ ++A+ + + + FL P +LK + + E D+ GG QAER R +
Sbjct: 2 LLDKCQQANEQYAPVLTHFLDPRGQYILKVIVGSFE---DLDVHFYGG-NQAERQRAIIA 57
Query: 141 --HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+ E D DIV + I F H LG+I+ GI RE++GDII+ + QF
Sbjct: 58 PTYFEPNADDFDIVL-IEIDYPQKFVTLQHQHILGTIMSLGIEREQLGDIIV--NERIQF 114
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
++ +L Y+I L ++ +V IPL + + K F+T + LR+D + +
Sbjct: 115 VLTKQLESYIILELTRIKGATVKLNTIPLTNMIQSNEQWKYFETTVSGLRLDVVLKEMIR 174
Query: 259 LSRS 262
SR+
Sbjct: 175 KSRT 178
>gi|268611660|ref|ZP_06145387.1| RNA-binding S4 [Ruminococcus flavefaciens FD-1]
Length = 252
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 69/144 (47%), Gaps = 3/144 (2%)
Query: 127 GGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQ-PCSHGDFLGSILGTGIAREKI 185
GG+P A R L+V H + + +T + + +H DFLG+ +G + RE I
Sbjct: 57 GGFPDARRKMLAVYHDYCDEYVEEEYPFVCLTFTYRKEDKLTHRDFLGTFMGMQLKREVI 116
Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
GDI++ E AQ V A +++S+ K+G V V + LE K T+ A
Sbjct: 117 GDIVV-AEGEAQAFVTEVAAKLILSSVSKIGRVGVKVSDDRPFELEVRQEYKKIIGTV-A 174
Query: 246 SLRVDALASAGFKLSRSKLVNLIR 269
SLR+D + S +SR LIR
Sbjct: 175 SLRLDCIVSLAAHISRDSAAGLIR 198
>gi|373857241|ref|ZP_09599983.1| RNA-binding S4 domain protein [Bacillus sp. 1NLA3E]
gi|372452891|gb|EHP26360.1| RNA-binding S4 domain protein [Bacillus sp. 1NLA3E]
Length = 257
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 70/170 (41%), Gaps = 2/170 (1%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
+DFL P + L + +VK GG AER R S+ D + +
Sbjct: 34 TDFLDPREQQIVKTILGEHGEVKVAFFGGTQNAERKRALFSPDYYQVSEEDFRITLFEVH 93
Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 218
F H LGS++ G+ R K GDI L E QF E+ YL T L+ VG
Sbjct: 94 YPSKFVTIEHRHVLGSLMSLGLKRGKYGDI-LYDESTVQFFAAEEIGSYLSTQLQMVGKA 152
Query: 219 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
++ IP + +SLR+D L S+ + +SR K LI
Sbjct: 153 TIRLEEIPFKKAVSVQEIWQEVSITASSLRLDTLISSIYPISRQKSQTLI 202
>gi|404371421|ref|ZP_10976726.1| hypothetical protein CSBG_01278 [Clostridium sp. 7_2_43FAA]
gi|226912451|gb|EEH97652.1| hypothetical protein CSBG_01278 [Clostridium sp. 7_2_43FAA]
Length = 256
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 98/211 (46%), Gaps = 26/211 (12%)
Query: 68 LLKGVGDKNAIEEVKHILEMARRASSRR-EVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
+LK + +A E +K I E + A + V S F +P + +V A
Sbjct: 7 ILKSFNEDDAKEAIK-IYEKYKLAYEKDITVFTSSFYSPNIWSFFENCCSN-NEVMFEAN 64
Query: 127 GGYPQAERCRL------SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGI 180
G + ++ER + +V +P + L I F H D+LGSIL GI
Sbjct: 65 GFFEESERRMICFNNLYNVDYP---------IKILEIKNKSNFSNLKHKDYLGSILSLGI 115
Query: 181 AREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSF 240
R K+GDII++ E A V+ E++DY+I +L +G + I ++ + P +F
Sbjct: 116 ERNKLGDIIVK-ENKAYLPVLEEISDYIINNLSHIGKSPIEIKIIDNIS---DIPSV-NF 170
Query: 241 KTI---EASLRVDALASAGFKLSRSKLVNLI 268
+ I +SLR D++ + LSR+K + LI
Sbjct: 171 EEIVINVSSLRADSIVAKLSSLSRAKAIELI 201
>gi|251780297|ref|ZP_04823217.1| S4 domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
gi|243084612|gb|EES50502.1| S4 domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
Length = 254
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 86/175 (49%), Gaps = 12/175 (6%)
Query: 97 VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS 156
V ++F +P + E ++ K +G + ER +S + + P + L
Sbjct: 34 VFGNNFYSPKIWSWFKENCEN-SEFKVTCEGIFKDCERKMISFNN---IYDIPFPIKLLK 89
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
+ G F H DFLG IL GI R KIGD+I++ + F + ++ +L+++++K+G
Sbjct: 90 VQGKSKFSNLEHKDFLGGILSLGIERNKIGDLIVE-DNVCYFPIHEDIFKFLLSNVDKIG 148
Query: 217 NVSVSCTRIPLLALEYEPPRTKSFK---TIEASLRVDALASAGFKLSRSKLVNLI 268
C I + E + P+ K FK + +SLR+D + S KLSR+K LI
Sbjct: 149 --KTPCC-IAEIQNEGDFPKIK-FKEDVILVSSLRIDGIVSKISKLSRAKAQMLI 199
>gi|442805086|ref|YP_007373235.1| RNA-binding S4 domain-containing protein [Clostridium stercorarium
subsp. stercorarium DSM 8532]
gi|442740936|gb|AGC68625.1| RNA-binding S4 domain-containing protein [Clostridium stercorarium
subsp. stercorarium DSM 8532]
Length = 265
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 74/151 (49%), Gaps = 7/151 (4%)
Query: 124 VAQGGYPQAERCRL----SVGHPEALTSDPDIVAALSITGNFG-FQPCSHGDFLGSILGT 178
V GGY A+R L PE +T D DI I + +H D LG+ILGT
Sbjct: 63 VFYGGYEGAQRAVLIFLPDYIRPEEITDD-DINPLSCIRAKYSSVNSVTHRDILGAILGT 121
Query: 179 GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK 238
G+ RE IGDI++ G + +V+ E+ YL ++ G + + IPL + + K
Sbjct: 122 GLKREVIGDILVNGN-SSDIIVMKEVVPYLESNFSSAGKTKLEISVIPLSEIRIPEAKFK 180
Query: 239 SFKTIEASLRVDALASAGFKLSRSKLVNLIR 269
ASLR+D++ S+ F +SR K I+
Sbjct: 181 IINDTVASLRLDSVVSSAFSVSREKAAEAIK 211
>gi|315917373|ref|ZP_07913613.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
25563]
gi|313691248|gb|EFS28083.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
25563]
Length = 257
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Query: 121 VKAVAQGGYPQAERCRLSVGHPEALT-----SDPDIVAALSITGNFGFQPCSHGDFLGSI 175
+KAV GGY A R R+ PE L + D++ L +T +H D+LG+
Sbjct: 53 IKAVFWGGYEGAMR-RILFFLPEYLEEYSYETFEDVLGVLEVTKLDKNLSLNHRDYLGAF 111
Query: 176 LGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPP 235
G G+ RE +GDI+++ E GA +V+ E+ L+ VG V L L +
Sbjct: 112 TGLGLKRETMGDILVR-ENGADLIVLKEMIPILLEEYCSVGKSFVQVQEKSLKKLIFVEE 170
Query: 236 RTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSL 273
K + ASLR+D + F LSR++ I+ S+
Sbjct: 171 NQKKERGTVASLRLDNVLCEIFNLSRTQAQEWIQKGSV 208
>gi|317472791|ref|ZP_07932102.1| S4 domain-containing protein [Anaerostipes sp. 3_2_56FAA]
gi|316899710|gb|EFV21713.1| S4 domain-containing protein [Anaerostipes sp. 3_2_56FAA]
Length = 250
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 91/197 (46%), Gaps = 17/197 (8%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMAL-----EKLADVKAVAQGGYPQAERCR 136
K + E+A+ A ++S + P L E +L ++L+ A GG+ +RC
Sbjct: 8 KRLEELAQTA-----FMNSVYTHTPFLSEREQSLFHEMRQELSFADASLYGGHEDYDRCI 62
Query: 137 LSVGHPEALTSDPDI-VAALSITGNFG--FQPCSHGDFLGSILGTGIAREKIGDIIL-QG 192
+ G E + +I +A I+ F + +H D+LG+++ GI R +IGDI++ G
Sbjct: 63 VVFGSKEMFGYEGEIPLACAKISPLFKKFAETLTHRDYLGALMNLGIERNQIGDILISDG 122
Query: 193 EKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDAL 252
E A +A +L L KV N V + + Y + +S R+DAL
Sbjct: 123 E--AYVFCFRHMAGFLCRELTKVRNTQVETVGVDFKEIHYRQEYSTK-DGFVSSPRLDAL 179
Query: 253 ASAGFKLSRSKLVNLIR 269
F LSRSK ++L +
Sbjct: 180 VGLAFGLSRSKALSLFQ 196
>gi|341821086|emb|CCC57422.1| ribosomal protein S4e [Weissella thailandensis fsh4-2]
Length = 261
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 5/175 (2%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSV--GHPEALTSDPDIVAALSI 157
++FL P + + + D+K GGY AE RL + + + D D+ + I
Sbjct: 36 TNFLNPREIYILTTLVNQQDDLKVFQYGGYQNAENQRLLIAPNYYVPVLDDFDL-KVIQI 94
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE-LADYLITSLEKVG 216
F H LG+ + GIAR+ IGDII +GE + V + + +++ L+ +G
Sbjct: 95 KYPEKFTTLHHSTILGTFMHNGIARQSIGDII-KGENETWYFVATKAIGTFILQQLDHIG 153
Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYS 271
V + + T +SLR+D++ + G+ +SR+ +I +
Sbjct: 154 KAKVRFKEVTGDHITVVDNEWTIINTTVSSLRLDSIVANGYNISRNHAKQMIEHD 208
>gi|325956507|ref|YP_004291919.1| cell-division protein [Lactobacillus acidophilus 30SC]
gi|385817397|ref|YP_005853787.1| cell-division protein [Lactobacillus amylovorus GRL1118]
gi|325333072|gb|ADZ06980.1| cell-division protein [Lactobacillus acidophilus 30SC]
gi|327183335|gb|AEA31782.1| cell-division protein [Lactobacillus amylovorus GRL1118]
Length = 266
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 82/187 (43%), Gaps = 10/187 (5%)
Query: 94 RREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-- 151
+ E + +DFL P K ++ D GGY AE+ R+ + E + PD
Sbjct: 34 KHESILTDFLDPA--KRDILKTIVGNDAFIQEYGGYSDAEKKRVFLSE-EWVNLRPDAYQ 90
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
+ I F +H LG++ +GI + GDII G QF ELAD+
Sbjct: 91 IQPYEIDYPQKFIQINHSAVLGTLANSGIDTDTFGDIITDGNGKWQFFAKKELADFFEEQ 150
Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE--ASLRVDALASAGFKLSRSKLVNLIR 269
++++G V P+ E P S + E AS+R+DA+ S K SR ++ +I
Sbjct: 151 IDRIGRAQVKLK--PITFKEVLVPEDDSSEKTEIVASMRIDAVLSGISKQSRGQIQKMIN 208
Query: 270 YSSLASL 276
S L L
Sbjct: 209 -SQLVKL 214
>gi|302672285|ref|YP_003832245.1| RNA-binding S4 domain-containing protein [Butyrivibrio
proteoclasticus B316]
gi|302396758|gb|ADL35663.1| RNA-binding S4 domain-containing protein [Butyrivibrio
proteoclasticus B316]
Length = 271
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 97/216 (44%), Gaps = 35/216 (16%)
Query: 84 ILEMARRASSRREVLHSDFLTPPVLKESMMALEKLAD------------VKAVAQGGYPQ 131
I ++A RA V H+DFL+ + E M + LA V GG
Sbjct: 15 IKDLANRAYLNGFVTHTDFLS---VSEIAMFYQILASEGVPGNVHEYCGASYVVYGGAED 71
Query: 132 AER---CRLSVGHPEALT---------SDPDIVAALSIT--GNFGFQPCSHGDFLGSILG 177
AER C L P+ L +D ++ + I N +H D+LGSI+
Sbjct: 72 AERAMVCFL----PDYLDEETFLVSEKADNTVLKCVHIKPLNNKFADDLNHRDYLGSIMN 127
Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
GI R++IGD IL G+K A P++A + L ++ + SV C + + EP
Sbjct: 128 LGIERDQIGD-ILAGDKEAYIFATPDIAQMMEKELIRIRHTSVRCGIVNAADCDIEPKFE 186
Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSL 273
+ ++ AS R+DA+ + + LSRS+ LI S+
Sbjct: 187 EISGSV-ASERIDAILAFVYHLSRSEAQKLIESESV 221
>gi|386363047|ref|YP_006072378.1| hypothetical protein SPYALAB49_001227 [Streptococcus pyogenes
Alab49]
gi|350277456|gb|AEQ24824.1| hypothetical protein SPYALAB49_001227 [Streptococcus pyogenes
Alab49]
Length = 263
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 97/205 (47%), Gaps = 12/205 (5%)
Query: 86 EMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSV--GH 141
+M R + ++FL P +E M+ +L L D+K Y +E R+ + G+
Sbjct: 24 DMINRVEDYYLLEVTEFLNP---REVMILKSLIALTDLKMFVSTDYYPSEYGRVIIAPGY 80
Query: 142 PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFL 199
+ SD I A + I+ F +H LG+++ G+ R GD+ + E G AQ +
Sbjct: 81 YDLEQSDFQI-ALVEISYQAKFNQLTHSQILGTLINELGVKRNLFGDVFV--EMGYAQLM 137
Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
+ EL DY + ++ K+ SV I L +++ + +S R+D + + K
Sbjct: 138 IKRELLDYFLGTITKIAKTSVKLREINFDQLIRSIDNSQTLDILVSSFRLDGVVATILKK 197
Query: 260 SRSKLVNLIRYSSLASLVQISAKAS 284
SR++++ LI + + +++ KAS
Sbjct: 198 SRTQVIALIEANKIKVNYRLANKAS 222
>gi|209559680|ref|YP_002286152.1| hypothetical protein Spy49_1169c [Streptococcus pyogenes NZ131]
gi|209540881|gb|ACI61457.1| hypothetical protein Spy49_1169c [Streptococcus pyogenes NZ131]
Length = 263
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 97/205 (47%), Gaps = 12/205 (5%)
Query: 86 EMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSV--GH 141
+M R + ++FL P +E M+ +L L D+K Y +E R+ + G+
Sbjct: 24 DMINRVEDYYLLEVTEFLNP---REVMILKSLIALTDLKMFVSTDYYPSEYGRVIIAPGY 80
Query: 142 PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFL 199
+ SD I A + I+ F +H LG+++ G+ R GD+ + E G AQ L
Sbjct: 81 YDLEQSDFQI-ALVEISYQAKFNQLTHSQILGTLINELGVKRNLFGDVFV--EMGYAQLL 137
Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
+ EL DY + ++ K+ SV + L +++ + +S R+D + + K
Sbjct: 138 IKRELLDYFLGTITKIAKTSVKLREVNFDQLIRSIDNSQTLDILVSSFRLDGVVATILKK 197
Query: 260 SRSKLVNLIRYSSLASLVQISAKAS 284
SR++++ LI + + +++ KAS
Sbjct: 198 SRTQVIALIEANKIKVNYRLANKAS 222
>gi|315038055|ref|YP_004031623.1| cell-division protein [Lactobacillus amylovorus GRL 1112]
gi|312276188|gb|ADQ58828.1| cell-division protein [Lactobacillus amylovorus GRL 1112]
Length = 266
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 82/187 (43%), Gaps = 10/187 (5%)
Query: 94 RREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-- 151
+ E + +DFL P K ++ D GGY AE+ R+ + E + PD
Sbjct: 34 KHESILTDFLDPA--KRDILKTIVGNDAFIQEYGGYSDAEKKRVFLSE-EWVNLRPDDYQ 90
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
+ I F +H LG++ +GI + GDII G QF ELAD+
Sbjct: 91 IQPYEIDYPQKFIQINHSAVLGTLANSGIDTDTFGDIITDGNGKWQFFAKKELADFFEEQ 150
Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE--ASLRVDALASAGFKLSRSKLVNLIR 269
++++G V P+ E P S + E AS+R+DA+ S K SR ++ +I
Sbjct: 151 IDRIGRAQVKLK--PITFKEVLVPEDDSSEKTEIVASMRIDAVLSGISKQSRGQIQKMIN 208
Query: 270 YSSLASL 276
S L L
Sbjct: 209 -SQLVKL 214
>gi|56964109|ref|YP_175840.1| hypothetical protein ABC2344 [Bacillus clausii KSM-K16]
gi|56910352|dbj|BAD64879.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
Length = 253
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 90/191 (47%), Gaps = 8/191 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ HI + +A+ + + FL P + + + + + ++ GG ER R S+
Sbjct: 13 IDHIQTLREQATRYHQEKLTGFLDPRMQEVAKSVIGQDGEIDLQFFGGADGCERKRASI- 71
Query: 141 HPEALTSDP---DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
P L ++P DI + N F +H D LG+++ TG+ RE GDI + +
Sbjct: 72 RPAYLKNEPIDWDISLFKAAYAN-KFVTLTHRDVLGALMNTGMKRETFGDISVT-DNAFY 129
Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
E + Y+ +L++VG +V+ L L E K +SLR+DAL SA +
Sbjct: 130 VACTKEASAYIAIALKQVGKATVTLEETDTLELPDEKWEEKPVTV--SSLRLDALLSALY 187
Query: 258 KLSRSKLVNLI 268
LSR+K +LI
Sbjct: 188 GLSRAKAADLI 198
>gi|346722871|ref|YP_001180686.2| RNA-binding S4 domain-containing protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|345106842|gb|ABP67495.2| RNA-binding S4 domain protein [Caldicellulosiruptor saccharolyticus
DSM 8903]
Length = 256
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 100/212 (47%), Gaps = 23/212 (10%)
Query: 74 DKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQ 131
+K I +VK+++E + + +SDFL+P K ++ + K + Q GGY
Sbjct: 8 NKYEILKVKNLIERSYGG-----IEYSDFLSPYAQKYAIDIILKGENPYLFYQIWGGYED 62
Query: 132 AERCRLSVGHPEALTSDP------DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
+ER L++ L DI+ S T SH LG+ +G G+ R+KI
Sbjct: 63 SERKVLALSFDSRLEETDFSHFPIDIILIKSDT------ILSHRQILGTFIGQGLKRDKI 116
Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
GDI+++ K F V E++ ++ T ++++G + + ++ S K I
Sbjct: 117 GDILVKENKALVF-VKEEVSLFITTHIDRIGRDRIKTEVVNKDDIDISQFIQNSGKRIVC 175
Query: 246 ---SLRVDALASAGFKLSRSKLVNLIRYSSLA 274
S+RVDA+ S GF +SR +L+R +A
Sbjct: 176 SVPSMRVDAIVSHGFGISREDASDLVRQFKVA 207
>gi|15675416|ref|NP_269590.1| RNA binding protein [Streptococcus pyogenes SF370]
gi|71911058|ref|YP_282608.1| RNA binding protein [Streptococcus pyogenes MGAS5005]
gi|410680912|ref|YP_006933314.1| hypothetical protein A20_1279c [Streptococcus pyogenes A20]
gi|13622604|gb|AAK34311.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
gi|71853840|gb|AAZ51863.1| RNA binding protein [Streptococcus pyogenes MGAS5005]
gi|395454299|dbj|BAM30638.1| RNA binding protein [Streptococcus pyogenes M1 476]
gi|409693501|gb|AFV38361.1| hypothetical protein A20_1279c [Streptococcus pyogenes A20]
Length = 263
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 97/205 (47%), Gaps = 12/205 (5%)
Query: 86 EMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSV--GH 141
+M R + ++FL P +E M+ +L L D+K Y +E R+ + G+
Sbjct: 24 DMINRVEDYYLLEVTEFLNP---REVMILKSLIALTDLKMFVSTDYYPSEYGRVIIAPGY 80
Query: 142 PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFL 199
+ SD I A + I+ F +H LG+++ G+ R GD+ + E G AQ +
Sbjct: 81 YDLEQSDFQI-ALVEISYQAKFNQLTHSQILGTLINELGVKRNLFGDVFV--EMGYAQLM 137
Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
+ EL DY + ++ K+ SV + L +++ + +S R+D + + K
Sbjct: 138 IKRELLDYFLGTITKIAKTSVKLREVNFDQLIRSIDNSQTLDILVSSFRLDGVVATILKK 197
Query: 260 SRSKLVNLIRYSSLASLVQISAKAS 284
SR++++ LI + + +++ KAS
Sbjct: 198 SRTQVIALIEANKIKVNYRVANKAS 222
>gi|153814895|ref|ZP_01967563.1| hypothetical protein RUMTOR_01110 [Ruminococcus torques ATCC 27756]
gi|317500408|ref|ZP_07958632.1| RNA-binding S4 protein [Lachnospiraceae bacterium 8_1_57FAA]
gi|331089585|ref|ZP_08338484.1| hypothetical protein HMPREF1025_02067 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336438901|ref|ZP_08618522.1| hypothetical protein HMPREF0990_00916 [Lachnospiraceae bacterium
1_1_57FAA]
gi|145847926|gb|EDK24844.1| S4 domain protein [Ruminococcus torques ATCC 27756]
gi|316898163|gb|EFV20210.1| RNA-binding S4 protein [Lachnospiraceae bacterium 8_1_57FAA]
gi|330404953|gb|EGG84491.1| hypothetical protein HMPREF1025_02067 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336017391|gb|EGN47153.1| hypothetical protein HMPREF0990_00916 [Lachnospiraceae bacterium
1_1_57FAA]
Length = 266
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 98/205 (47%), Gaps = 26/205 (12%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ----GGYPQAERCRL 137
K +E++R A R + +SDFL L E + L L Q GGY AER ++
Sbjct: 15 KRFIELSRNAYQRDFITYSDFLN---LNEQNI-LHTLPKENLFTQILTFGGYGMAER-QM 69
Query: 138 SVGHPEAL-------TSDPDIV-------AALSITGNFGFQPCSHGDFLGSILGTGIARE 183
+ P+AL DP ++ L + F + +H D+LGSIL GI R
Sbjct: 70 AAFIPDALYLRCGKKELDPALIRYPFKALQVLPLNRKFS-EDLTHRDYLGSILNLGIDRS 128
Query: 184 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTI 243
K GDI+++ F ++ +L + L ++ + SV +P ++Y P + T+
Sbjct: 129 KTGDILIENNTAILF-AHDDIVSFLCSELTRIRHTSVKTEELPSFDIQYTPKYEELTGTV 187
Query: 244 EASLRVDALASAGFKLSRSKLVNLI 268
AS+R+D+L S F SR+KL LI
Sbjct: 188 -ASVRLDSLLSLAFSSSRTKLSGLI 211
>gi|385814079|ref|YP_005850472.1| Cell division protein, S4-like domain [Lactobacillus helveticus
H10]
gi|323466798|gb|ADX70485.1| Cell division protein, S4-like domain [Lactobacillus helveticus
H10]
Length = 266
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 77/177 (43%), Gaps = 5/177 (2%)
Query: 94 RREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD--I 151
+ E + +DFL P K +++ DV GGYP AE+ R+ + E + P +
Sbjct: 34 KHEPILTDFLDPG--KRAILKTIVGNDVFMQEYGGYPNAEKKRVYLSE-EWVNLQPSDYL 90
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
+ I F +H LG++ +GI + GDII QF EL D+
Sbjct: 91 IEPYEIEYPQKFIKINHSAILGTLANSGIETDTFGDIITDENGKWQFFAKKELVDFFEEQ 150
Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+ ++G V I + + I AS+R+DA+ S+ K SR ++ LI
Sbjct: 151 ITRIGRAQVKLKEITFKDVLVPEDDSTEKTEIVASMRIDAVLSSISKQSRGQIQKLI 207
>gi|420143356|ref|ZP_14650857.1| Hypothetical protein Y7C_90763 [Lactococcus garvieae IPLA 31405]
gi|391856875|gb|EIT67411.1| Hypothetical protein Y7C_90763 [Lactococcus garvieae IPLA 31405]
Length = 265
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 92/193 (47%), Gaps = 8/193 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ +L+ R + V+ + FL P + E + +L +++ + Q E ++ +
Sbjct: 18 IDRVLDWMERVENNYSVVTTYFLNPREV-EILESLANKRELQIFSTQDIAQTELTKIIIA 76
Query: 141 HPEALTSDP-DI-VAALSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQ 197
PE D D +A L I+ F H LGS LG TGI R +IGDIIL E Q
Sbjct: 77 -PEFYQLDILDFDLALLEISYAQKFYQLKHSQILGSFLGQTGIRRSEIGDIIL-NEGRVQ 134
Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAG 256
V L + ++ K+G+ +V P LE E + + +SLR+D + ++
Sbjct: 135 VFVSKHLLEIFQNNIRKIGSATVKFVEKPFEERLETETSSVRKVVLV-SSLRIDKIIAST 193
Query: 257 FKLSRSKLVNLIR 269
F++SR+ VN+++
Sbjct: 194 FEISRNLAVNMLQ 206
>gi|403515290|ref|YP_006656110.1| cell division protein [Lactobacillus helveticus R0052]
gi|403080728|gb|AFR22306.1| cell division protein [Lactobacillus helveticus R0052]
Length = 266
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 77/177 (43%), Gaps = 5/177 (2%)
Query: 94 RREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD--I 151
+ E + +DFL P K +++ DV GGYP AE+ R+ + E + P +
Sbjct: 34 KHEPILTDFLDPG--KRAILKTIVGNDVFMQEYGGYPNAEKKRVYLSE-EWVNLQPSDYL 90
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
+ I F +H LG++ +GI + GDII QF EL D+
Sbjct: 91 IQPYEIEYPQKFIKINHSAILGTLANSGIETDTFGDIITDENGKWQFFAKKELVDFFEEQ 150
Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+ ++G V I + + I AS+R+DA+ S+ K SR ++ LI
Sbjct: 151 ITRIGRAQVKLKEITFKDVLVPEDDSTEKTEIVASMRIDAVLSSISKQSRGQIQKLI 207
>gi|161507320|ref|YP_001577274.1| cell division protein [Lactobacillus helveticus DPC 4571]
gi|260102623|ref|ZP_05752860.1| cell-division protein [Lactobacillus helveticus DSM 20075]
gi|160348309|gb|ABX26983.1| Cell division protein [Lactobacillus helveticus DPC 4571]
gi|260083577|gb|EEW67697.1| cell-division protein [Lactobacillus helveticus DSM 20075]
Length = 266
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 77/177 (43%), Gaps = 5/177 (2%)
Query: 94 RREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD--I 151
+ E + +DFL P K +++ DV GGYP AE+ R+ + E + P +
Sbjct: 34 KHEPILTDFLDPG--KRAILKTIVGNDVFMQEYGGYPNAEKKRVYLSE-EWVNLQPSDYL 90
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
+ I F +H LG++ +GI + GDII QF EL D+
Sbjct: 91 IQPYEIEYPQKFIKINHSAILGTLANSGIETDTFGDIITDENGKWQFFAKKELVDFFEEQ 150
Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+ ++G V I + + I AS+R+DA+ S+ K SR ++ LI
Sbjct: 151 ITRIGRAQVKLKEITFKDVLVPEDDSTEKTEIVASMRIDAVLSSISKQSRGQIQKLI 207
>gi|171778695|ref|ZP_02919791.1| hypothetical protein STRINF_00643 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|379704852|ref|YP_005203311.1| hypothetical protein Sinf_0487 [Streptococcus infantarius subsp.
infantarius CJ18]
gi|171282652|gb|EDT48076.1| S4 domain protein [Streptococcus infantarius subsp. infantarius
ATCC BAA-102]
gi|374681551|gb|AEZ61840.1| hypothetical protein, contains S4-like domain protein
[Streptococcus infantarius subsp. infantarius CJ18]
Length = 261
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 87/187 (46%), Gaps = 8/187 (4%)
Query: 86 EMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPE 143
++A+R +DFL P + + L ++ YP AE R+ V + E
Sbjct: 22 DIAQRVEETYAYSLTDFLNPRQVDIAKSILGNRGLRYFISSDYYP-AEYARILVAPDYYE 80
Query: 144 ALTSDPDIVAALSITGNFGFQPCSHGDFLGSIL-GTGIAREKIGDIILQGEKG-AQFLVV 201
D ++ A L + N F +H +G++L G+ R IGDI++ E+G AQ LV
Sbjct: 81 LNLEDFEL-ALLEVNYNSKFNQLTHAQIMGTLLHKLGVKRTIIGDILV--EQGYAQLLVT 137
Query: 202 PELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSR 261
+ DY ++ K+ SVS I L L + + +S+R+D + + KLSR
Sbjct: 138 KSMVDYFRVNVTKIAKASVSLKEISLDQLIKGEKESHQLDIMVSSMRLDKVLATVLKLSR 197
Query: 262 SKLVNLI 268
S+ + LI
Sbjct: 198 SQAIQLI 204
>gi|50914612|ref|YP_060584.1| RNA binding protein [Streptococcus pyogenes MGAS10394]
gi|50903686|gb|AAT87401.1| RNA binding protein [Streptococcus pyogenes MGAS10394]
Length = 263
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 97/205 (47%), Gaps = 12/205 (5%)
Query: 86 EMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSV--GH 141
+M R + ++FL P +E M+ +L L D+K Y +E R+ + G+
Sbjct: 24 DMINRVEDYYLLEVTEFLNP---REVMILKSLIALTDLKMFVSTDYYPSEYGRVIIAPGY 80
Query: 142 PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFL 199
+ SD I A + I+ F +H LG+++ G+ R GD+ + E G AQ +
Sbjct: 81 YDLEQSDFQI-ALVEISYQAKFNQLTHSQILGTLINELGVKRNLFGDVFV--EMGYAQLM 137
Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
+ EL DY + ++ K+ SV + L +++ + +S R+D + + K
Sbjct: 138 IKRELLDYFLGTITKIAKTSVKLREVNFDQLIRSIDNSQTLDILVSSFRLDGVVATILKK 197
Query: 260 SRSKLVNLIRYSSLASLVQISAKAS 284
SR++++ LI + + +++ KAS
Sbjct: 198 SRTQVIALIEANKIKVNYRLANKAS 222
>gi|21910704|ref|NP_664972.1| RNA binding protein [Streptococcus pyogenes MGAS315]
gi|28895606|ref|NP_801956.1| RNA binding protein [Streptococcus pyogenes SSI-1]
gi|56808756|ref|ZP_00366473.1| COG2302: Uncharacterized conserved protein, contains S4-like domain
[Streptococcus pyogenes M49 591]
gi|94988870|ref|YP_596971.1| RNA binding protein [Streptococcus pyogenes MGAS9429]
gi|94992760|ref|YP_600859.1| RNA binding protein [Streptococcus pyogenes MGAS2096]
gi|383480270|ref|YP_005389164.1| hypothetical protein MGAS15252_1129 [Streptococcus pyogenes
MGAS15252]
gi|383494252|ref|YP_005411928.1| hypothetical protein MGAS1882_1190 [Streptococcus pyogenes
MGAS1882]
gi|417856571|ref|ZP_12501630.1| hypothetical protein SPYOHK_03505 [Streptococcus pyogenes HKU
QMH11M0907901]
gi|21904907|gb|AAM79775.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
gi|28810855|dbj|BAC63789.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
gi|94542378|gb|ABF32427.1| RNA binding protein [Streptococcus pyogenes MGAS9429]
gi|94544278|gb|ABF34326.1| RNA binding protein [Streptococcus pyogenes MGAS10270]
gi|94546268|gb|ABF36315.1| RNA binding protein [Streptococcus pyogenes MGAS2096]
gi|378928260|gb|AFC66466.1| hypothetical protein MGAS15252_1129 [Streptococcus pyogenes
MGAS15252]
gi|378929979|gb|AFC68396.1| hypothetical protein MGAS1882_1190 [Streptococcus pyogenes
MGAS1882]
gi|387933526|gb|EIK41639.1| hypothetical protein SPYOHK_03505 [Streptococcus pyogenes HKU
QMH11M0907901]
Length = 263
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 97/205 (47%), Gaps = 12/205 (5%)
Query: 86 EMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSV--GH 141
+M R + ++FL P +E M+ +L L D+K Y +E R+ + G+
Sbjct: 24 DMINRVEDYYLLEVTEFLNP---REVMILKSLIALTDLKMFVSTDYYPSEYGRVIIAPGY 80
Query: 142 PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFL 199
+ SD I A + I+ F +H LG+++ G+ R GD+ + E G AQ +
Sbjct: 81 YDLEQSDFQI-ALVEISYQAKFNQLTHSQILGTLINELGVKRNLFGDVFV--EMGYAQLM 137
Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
+ EL DY + ++ K+ SV + L +++ + +S R+D + + K
Sbjct: 138 IKRELLDYFLGTITKIAKTSVKLREVNFDQLIRSIDNSQTLDILVSSFRLDGVVATILKK 197
Query: 260 SRSKLVNLIRYSSLASLVQISAKAS 284
SR++++ LI + + +++ KAS
Sbjct: 198 SRTQVIALIEANKIKVNYRLANKAS 222
>gi|71903846|ref|YP_280649.1| RNA binding protein [Streptococcus pyogenes MGAS6180]
gi|71802941|gb|AAX72294.1| RNA binding protein [Streptococcus pyogenes MGAS6180]
Length = 263
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 97/205 (47%), Gaps = 12/205 (5%)
Query: 86 EMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSV--GH 141
+M R + ++FL P +E M+ +L L D+K Y +E R+ + G+
Sbjct: 24 DMINRVGDYYLLEVTEFLNP---REVMILKSLIALTDLKMFVSTDYYPSEYGRVIIAPGY 80
Query: 142 PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFL 199
+ SD I A + I+ F +H LG+++ G+ R GD+ + E G AQ +
Sbjct: 81 YDLEQSDFQI-ALVEISYQAKFNQLTHSQILGTLINELGVKRNLFGDVFV--EMGYAQLM 137
Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
+ EL DY + ++ K+ SV + L +++ + +S R+D + + K
Sbjct: 138 IKRELLDYFLGTITKIAKTSVKLREVNFDQLIRSIDNSQTLDILVSSFRLDGVVATILKK 197
Query: 260 SRSKLVNLIRYSSLASLVQISAKAS 284
SR++++ LI + + +++ KAS
Sbjct: 198 SRTQVIALIEANKIKVNYRLANKAS 222
>gi|19746466|ref|NP_607602.1| RNA binding protein [Streptococcus pyogenes MGAS8232]
gi|19748670|gb|AAL98101.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
Length = 264
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 97/205 (47%), Gaps = 12/205 (5%)
Query: 86 EMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSV--GH 141
+M R + ++FL P +E M+ +L L D+K Y +E R+ + G+
Sbjct: 24 DMINRVGDYYLLEVTEFLNP---REVMILKSLIALTDLKMFVSTDYYPSEYGRVIIAPGY 80
Query: 142 PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFL 199
+ SD I A + I+ F +H LG+++ G+ R GD+ + E G AQ +
Sbjct: 81 YDLEQSDFQI-ALVEISYQAKFNQLTHSQILGTLINELGVKRNLFGDVFV--EMGYAQLM 137
Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
+ EL DY + ++ K+ SV + L +++ + +S R+D + + K
Sbjct: 138 IKRELLDYFLGTITKIAKTSVKLREVNFDQLIRSIDNSQTLDILVSSFRLDGVVATILKK 197
Query: 260 SRSKLVNLIRYSSLASLVQISAKAS 284
SR++++ LI + + +++ KAS
Sbjct: 198 SRTQVIALIEANKIKVNYRLANKAS 222
>gi|419706460|ref|ZP_14233981.1| Hypothetical protein PS4_51353 [Streptococcus salivarius PS4]
gi|383283781|gb|EIC81724.1| Hypothetical protein PS4_51353 [Streptococcus salivarius PS4]
Length = 267
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 85/175 (48%), Gaps = 11/175 (6%)
Query: 100 SDFLTPPVLKESMMALEKLAD---VKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAAL 155
+DFL P + +E LA+ +K + E R+ + SD D + L
Sbjct: 38 TDFLNP----REIQIVEDLANYYHLKFFVSSNHETEEYRRVIIAPDYYELSDDDFEIKRL 93
Query: 156 SITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 214
++ F +H LG+++ G+ R+ GDII+ + QF + LA+Y I +++K
Sbjct: 94 EVSYARQFNTLTHPKILGTLINQLGLERQVFGDIIINDDGRIQFSIASHLANYAIMTIKK 153
Query: 215 VGNVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+GNVSV+ I + + + SF + +S+R+D + + +SRS+ + LI
Sbjct: 154 IGNVSVTLKEISEEDWITNQENYSHSF-VLLSSMRLDNVLATVLNISRSRALKLI 207
>gi|347522217|ref|YP_004779788.1| hypothetical protein LCGT_1611 [Lactococcus garvieae ATCC 49156]
gi|385833602|ref|YP_005871377.1| hypothetical protein [Lactococcus garvieae Lg2]
gi|343180785|dbj|BAK59124.1| conserved hypothetical protein [Lactococcus garvieae ATCC 49156]
gi|343182755|dbj|BAK61093.1| conserved hypothetical protein [Lactococcus garvieae Lg2]
Length = 265
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 92/193 (47%), Gaps = 8/193 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ +L+ R + V+ + FL P + E + +L +++ + Q E ++ +
Sbjct: 18 IDRVLDWMDRVENNYSVVTTYFLNPREV-EILESLANKRELQIFSTQDIAQTELTKIIIA 76
Query: 141 HPEALTSDP-DI-VAALSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQ 197
PE D D +A L I+ F H LGS LG TGI R +IGDIIL E Q
Sbjct: 77 -PEFYQLDILDFDLALLEISYAQKFYQLKHSQILGSFLGQTGIRRSEIGDIIL-NEGRVQ 134
Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAG 256
V L + ++ K+G+ +V P LE E + + +SLR+D + ++
Sbjct: 135 VFVSKHLLEIFQNNIRKIGSATVKFVEKPFEERLETETSSVRKVVLV-SSLRIDKIIAST 193
Query: 257 FKLSRSKLVNLIR 269
F++SR+ VN+++
Sbjct: 194 FEISRNLAVNMLQ 206
>gi|365925132|ref|ZP_09447895.1| RNA binding protein [Lactobacillus mali KCTC 3596 = DSM 20444]
gi|420266443|ref|ZP_14768909.1| RNA binding protein [Lactobacillus mali KCTC 3596 = DSM 20444]
gi|394425357|gb|EJE98341.1| RNA binding protein [Lactobacillus mali KCTC 3596 = DSM 20444]
Length = 261
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 86/184 (46%), Gaps = 5/184 (2%)
Query: 87 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 146
M + A+ R +L ++FL P + + L +D+K G AER R ++ +PE
Sbjct: 25 MTQAATEYRPIL-TEFLNPREVYIAQTLLNTESDLKMKTDGLLQGAERQR-ALFYPEYYE 82
Query: 147 -SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPEL 204
S+ D ++ + I F H LG++ G+ R IGDI+ GE+ QF+ +
Sbjct: 83 PSEADFELSLIWIKYPTKFATLKHSQILGALTHLGLRRNLIGDIVTDGERW-QFITAANM 141
Query: 205 ADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKL 264
++L +E VG V V + + + + +SLR+D L + + LSR +
Sbjct: 142 VNFLKIQVETVGKVKVHLEEVDKSEIVSPVDEWQGLQVTVSSLRLDTLIAGVYNLSRKHV 201
Query: 265 VNLI 268
+L+
Sbjct: 202 KDLL 205
>gi|94994748|ref|YP_602846.1| RNA binding protein [Streptococcus pyogenes MGAS10750]
gi|94548256|gb|ABF38302.1| RNA binding protein [Streptococcus pyogenes MGAS10750]
Length = 263
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 96/205 (46%), Gaps = 12/205 (5%)
Query: 86 EMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSV--GH 141
+M R + ++FL P +E M+ +L L D+K Y +E R+ + G+
Sbjct: 24 DMINRVEDYYLLEVTEFLNP---REVMILKSLIALTDLKMFVSTDYYPSEYGRVIIAPGY 80
Query: 142 PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFL 199
+ SD I A + I+ F +H LG+++ G+ R GD+ + E G AQ +
Sbjct: 81 YDLEQSDFQI-ALVEISYQAKFNQLTHSQILGTLINELGVKRNLFGDVFV--EMGYAQLM 137
Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
+ EL DY + ++ K+ SV + L ++ + +S R+D + + K
Sbjct: 138 IKRELLDYFLGTITKIAKTSVKLREVNFDQLIRSIDNNQTLDILVSSFRLDGVVATILKK 197
Query: 260 SRSKLVNLIRYSSLASLVQISAKAS 284
SR++++ LI + + +++ KAS
Sbjct: 198 SRTQVIALIEANKIKVNYRLANKAS 222
>gi|410724123|ref|ZP_11363322.1| hypothetical protein A370_01382 [Clostridium sp. Maddingley
MBC34-26]
gi|410602409|gb|EKQ56889.1| hypothetical protein A370_01382 [Clostridium sp. Maddingley
MBC34-26]
Length = 258
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 89/193 (46%), Gaps = 19/193 (9%)
Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNF 161
F TP + L D+K + G + AER +S + ++P + + I
Sbjct: 43 FYTPNIWTWFEKNLSS-NDLKIESNGLFEDAERRMISFNNS---YNNPFPMKLIKIENTS 98
Query: 162 GFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVP---ELADYLITSLEKVGNV 218
F SH DFLG IL GI R KIGD+++ VP E+ +Y+I +++++ V
Sbjct: 99 KFSKLSHRDFLGGILSLGIERNKIGDLLVDNNT----CYVPIHEEIENYIIYNIDRISKV 154
Query: 219 SVSCTRIPLLALEYEPPRTKSFK---TIEASLRVDALASAGFKLSRSKLVNLIRYS-SLA 274
+ I L P+ + FK + +SLR+D + S +SRSK +I L
Sbjct: 155 VCNVKVIDDFEL---LPKVQ-FKEEIILVSSLRIDGIVSKIINISRSKASEMIEQGLVLI 210
Query: 275 SLVQISAKASAIR 287
+ V+I K+ ++
Sbjct: 211 NYVKIKDKSYELK 223
>gi|73662889|ref|YP_301670.1| hypothetical protein SSP1580 [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72495404|dbj|BAE18725.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 212
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 6/153 (3%)
Query: 118 LADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSI 175
D++ GG P AER R + P D + + I ++ F H LG+I
Sbjct: 8 FEDLEVTFYGG-PFAERKRAMIA-PSYFQPDAEAFEIVLIEIDYPQKFVTLQHQHILGTI 65
Query: 176 LGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPP 235
+ GI R+++GDI++ + QF + +L Y+I L K+ SV IP+ +
Sbjct: 66 MSLGIERDQLGDIVV--DDRIQFTLTKQLESYIILELTKIKGASVKLNSIPIKDMIQSKE 123
Query: 236 RTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+SF+T + LR+D + + SRS LI
Sbjct: 124 HWQSFETTVSGLRLDVVLKEMVRKSRSIAKQLI 156
>gi|374583009|ref|ZP_09656103.1| hypothetical protein DesyoDRAFT_4572 [Desulfosporosinus youngiae
DSM 17734]
gi|374419091|gb|EHQ91526.1| hypothetical protein DesyoDRAFT_4572 [Desulfosporosinus youngiae
DSM 17734]
Length = 265
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 83/171 (48%), Gaps = 10/171 (5%)
Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG-HPEALTSDPDIVAALSITGN 160
FL+ + S L K+ ++ +A+GG+P+AER R+ +G E L S+ ++ LS+
Sbjct: 43 FLSLAMRDWSEAVLHKV-HLEHLAEGGFPEAERVRILIGSRGEILASEDAQISILSVRPK 101
Query: 161 FGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSV 220
+H LGS++G G R+ GDI + G G E+A +L+ + G +
Sbjct: 102 DSRAQLAHPQILGSLMGLGFRRDVFGDIQV-GRSGFYVATTSEIAPFLLNHWTQAGREKI 160
Query: 221 SCTRIPLLAL---EYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
LLA + P + + + S R+DA+ + FK+SRS LI
Sbjct: 161 EV----LLANGEPDLLPDKGEERRITVNSSRLDAVIANAFKVSRSTAQELI 207
>gi|408790502|ref|ZP_11202121.1| hypothetical protein B807_953 [Lactobacillus florum 2F]
gi|408520226|gb|EKK20314.1| hypothetical protein B807_953 [Lactobacillus florum 2F]
Length = 263
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 78/151 (51%), Gaps = 8/151 (5%)
Query: 127 GGYPQAERCRLSVGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIARE 183
GG+ AE R + P+ SD ++ ++I F H LG++LGTG+ RE
Sbjct: 65 GGFADAEMQR-GLVFPDYFVPQLSDFEL-QLMAIDYPMRFATIKHYQILGALLGTGVKRE 122
Query: 184 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLA-LEYEPPRTKSFKT 242
+GD+I +K QF L YL ++L K+G+ +VS + + + L E +T
Sbjct: 123 VLGDVIT-NQKHWQFYCEATLVKYLQSNLTKIGSTTVSVLPVSMSSQLLPEDDSVLVHQT 181
Query: 243 IEASLRVDALASAGFKLSRSKLVNLIRYSSL 273
++ SLR+D + +A F +SR +L+R+ +
Sbjct: 182 LQ-SLRIDNVIAAAFHISRQAANDLVRHGQV 211
>gi|431794691|ref|YP_007221596.1| hypothetical protein Desdi_2788 [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430784917|gb|AGA70200.1| hypothetical protein Desdi_2788 [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 265
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 95/204 (46%), Gaps = 18/204 (8%)
Query: 74 DKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAE 133
DK E H+L++ A S + + FL+ L + + + +GG P AE
Sbjct: 15 DKELKLEGAHLLDLCEEAISTSRPVWTPFLSQ-ALGNWFGGILRSEGLAFRVEGGLPDAE 73
Query: 134 RCRL----SVGHPEALTSDPDIVAA--LSITGNFGFQPCSHGDFLGSILGTGIAREKIGD 187
R R G + + S+ ++ A L G H LGS++G G+ R+ IGD
Sbjct: 74 RARFLMVEDAGMLDQVASEVKVIRAKPLDPRGTM-----EHRQILGSLMGMGLKRDVIGD 128
Query: 188 IILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPP--RTKSFKTIEA 245
I + GE + V +AD L++ +K G + ++ L+ E P + + ++ A
Sbjct: 129 IRV-GEHCSFVAVAHGIADVLLSQWDKAGRERI---QVELVEGNQEIPAEQGEEWRITVA 184
Query: 246 SLRVDALASAGFKLSRSKLVNLIR 269
S RVDA+AS+ F +SRS LI+
Sbjct: 185 SSRVDAVASSSFNVSRSTFQELIQ 208
>gi|312864867|ref|ZP_07725098.1| S4 domain protein [Streptococcus downei F0415]
gi|311099994|gb|EFQ58207.1| S4 domain protein [Streptococcus downei F0415]
Length = 261
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 87/185 (47%), Gaps = 7/185 (3%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ + ++A+R +DFL P +K + L ++ + + + E ++ +
Sbjct: 18 IDKMTDLAKRVQDNYVYQVTDFLDPRQVKIAKSVLGQMG-LTYYLSTDFLKTEYAKIILA 76
Query: 141 HPE--ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQ 197
P+ L D +A L I+ N F +H +GS + G+ R GDIIL + AQ
Sbjct: 77 -PDYYELELDDFEIALLEISYNPKFNHLTHSQIMGSFINKLGLERSVFGDIIL-ADNRAQ 134
Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
LV + Y +S+ K+G +V T++P L K + +S+R+D + ++ F
Sbjct: 135 ILVKDSMVAYF-SSVNKIGRAAVKITKVPWSHLLESVNHAKEVDILVSSMRLDKVIASSF 193
Query: 258 KLSRS 262
KLSRS
Sbjct: 194 KLSRS 198
>gi|139473462|ref|YP_001128178.1| RNA binding protein [Streptococcus pyogenes str. Manfredo]
gi|134271709|emb|CAM29942.1| conserved hypothetical protein [Streptococcus pyogenes str.
Manfredo]
Length = 263
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 96/205 (46%), Gaps = 12/205 (5%)
Query: 86 EMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSV--GH 141
+M R + ++FL P +E M+ +L L D+K Y +E R+ + G+
Sbjct: 24 DMINRVEDYYLLEVTEFLNP---REVMILKSLIALTDLKMFVSTDYYPSEYGRVIIAPGY 80
Query: 142 PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFL 199
+ SD I A + I+ F +H LG+++ G+ R GD+ + E G AQ +
Sbjct: 81 YDLEQSDFQI-ALVEISYQAKFNQLTHSQILGTLINELGVKRNLFGDVFV--EMGYAQLM 137
Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
+ EL DY + ++ K+ SV + L +++ + +S R+D + + K
Sbjct: 138 IKRELLDYFLGTITKIAKTSVKLREVNFDQLIRSIDNSQTLDILVSSFRLDGVVATILKK 197
Query: 260 SRSKLVNLIRYSSLASLVQISAKAS 284
SR++++ LI + + ++ KAS
Sbjct: 198 SRTQVIALIEANKIKVNYRLVNKAS 222
>gi|332522681|ref|ZP_08398933.1| S4 domain protein [Streptococcus porcinus str. Jelinkova 176]
gi|332313945|gb|EGJ26930.1| S4 domain protein [Streptococcus porcinus str. Jelinkova 176]
Length = 262
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 93/206 (45%), Gaps = 4/206 (1%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
++ I ++ RR ++FL P + E + L +D++ + + E R+ +
Sbjct: 18 IEKIQDIIRRVEDSYSFYLTEFLNPRQV-EILKILVASSDLQCFSSSDFYHTEYGRVIIA 76
Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQF 198
++ D +A + I+ N F H LG+ + GI R +GDI++ AQ
Sbjct: 77 PDYYHLNECDFALAIVDISYNAKFNTIKHAQILGAFIHELGIQRSLLGDILV-APGHAQV 135
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
+ + Y IT++ K+ SV+ L L K + + +S R+D L + FK
Sbjct: 136 MTTKSMLSYAITNISKIARASVNLKEGSLEDLIQANVDEKHLELLLSSFRLDTLIANVFK 195
Query: 259 LSRSKLVNLIRYSSLASLVQISAKAS 284
LSRS+ + L+ + ++S KAS
Sbjct: 196 LSRSQAIKLVESEKVKINYRVSRKAS 221
>gi|451819455|ref|YP_007455656.1| putative RNA-binding S4 domain-containing protein [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451785434|gb|AGF56402.1| putative RNA-binding S4 domain-containing protein [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 254
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 89/196 (45%), Gaps = 13/196 (6%)
Query: 97 VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS 156
V F TP V K L+ K + G + +AER +S + + P + L
Sbjct: 34 VFGRSFYTPNVWKWFEENLQS-NYFKVESNGLFQEAERRMVSFNNSD---ESPFPMKLLK 89
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
I F +H D+LG IL GI R KIGD+++ E V E+ +++I +LE++
Sbjct: 90 IENTSKFTSLTHRDYLGGILSLGIERNKIGDLLV-SENACYLPVHEEVEEFIIFNLERIA 148
Query: 217 NVSVSCTRIPLLALEYEPPRTKSFK---TIEASLRVDALASAGFKLSRSKLVNLIRYSS- 272
V C + L++ P SFK + +SLR D + S SR+K +I
Sbjct: 149 --KVKCNVKIIDNLDFIPKF--SFKEELVLVSSLRADGIVSKITNASRTKAQGMIEQGQV 204
Query: 273 LASLVQISAKASAIRS 288
L + +I K+ ++S
Sbjct: 205 LLNYAKIKDKSQELKS 220
>gi|374997216|ref|YP_004972715.1| hypothetical protein Desor_4799 [Desulfosporosinus orientis DSM
765]
gi|357215582|gb|AET70200.1| hypothetical protein, contains S4-like domain [Desulfosporosinus
orientis DSM 765]
Length = 265
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 99/210 (47%), Gaps = 20/210 (9%)
Query: 68 LLKGVGDKNAIEEVKHILEMARRASSRREVLHSDF--LTPPV---LKESMMALEKLADVK 122
+LK +K+A E H+L+ VLH LTP + ++E + ++ + V+
Sbjct: 9 VLKFWDEKDARLEAAHLLDQLNL------VLHKGIKQLTPFLSLAMREWLESIIRKEQVE 62
Query: 123 AVAQGGYPQAERCRLSVG-HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIA 181
A+GG+P+AER R+ +G E L + +A + + H LGS++G GI
Sbjct: 63 YRAEGGFPEAERVRIFMGPRGEWLDTADTGMALIWVMPTDSRIQLQHRQILGSLMGLGIR 122
Query: 182 REKIGDIILQGEKGAQFLVVPELADYLITSLEKVG--NVSVSCTR-IPLLALEYEPPRTK 238
R+ GD I G+KG E+ D+++ + G + VS R P L P +
Sbjct: 123 RDVFGD-IQPGQKGFYIAAASEIVDFVLNNWTNAGRDTIQVSLVRGKPSLL----PDLGE 177
Query: 239 SFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+ +S R+DA+ + F +SR+ LI
Sbjct: 178 ERRITVSSSRIDAVIANAFGVSRTVAQELI 207
>gi|77407432|ref|ZP_00784303.1| ylmH protein [Streptococcus agalactiae H36B]
gi|77173959|gb|EAO76957.1| ylmH protein [Streptococcus agalactiae H36B]
Length = 140
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 2/116 (1%)
Query: 155 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
+ I N F +H +G++L G+ R +GDI+++ E AQ LV ++ ++L+ S+
Sbjct: 9 IEIKYNAKFNHLTHAKIMGTLLNYLGVKRSILGDILVE-EGCAQVLVDSQMTNHLVHSVT 67
Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIR 269
K+G SV +PL L + I +SLR+D + + K+SR++ LI
Sbjct: 68 KIGTASVQLAEVPLSKLLTPKQDIQKLTVIASSLRLDKILATILKISRTQSTKLIE 123
>gi|449984140|ref|ZP_21818857.1| hypothetical protein SMU52_01774 [Streptococcus mutans NFSM2]
gi|449180608|gb|EMB82761.1| hypothetical protein SMU52_01774 [Streptococcus mutans NFSM2]
Length = 262
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 12/175 (6%)
Query: 100 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 154
++FL P V+K S++ KL + + +E RL + + E +D I +
Sbjct: 37 TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91
Query: 155 LSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
L I N F +H LG+++ GI R +GDII+Q E AQ + + YL +
Sbjct: 92 LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150
Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+G +V+ IP K + +S+R+D + +A KLSR K LI
Sbjct: 151 KIGKATVAFEEIPFERQITSQSHIKEMNVLVSSMRLDKIIAAVLKLSRRKANQLI 205
>gi|160933114|ref|ZP_02080503.1| hypothetical protein CLOLEP_01957 [Clostridium leptum DSM 753]
gi|156868188|gb|EDO61560.1| hypothetical protein CLOLEP_01957 [Clostridium leptum DSM 753]
Length = 257
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 78/164 (47%), Gaps = 10/164 (6%)
Query: 127 GGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPC-SHGDFLGSILGTGIAREKI 185
GGY A+R R+ P+ L D + +SI +F + SH DFLG+++G GI RE +
Sbjct: 63 GGYEDAQR-RMFAAFPKELLPDSERFPVISIYLSFRKEDSLSHRDFLGALMGLGIKREAL 121
Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE- 244
GDI++ GE E+A+++ T L KVG V + A + P + F+ +
Sbjct: 122 GDILV-GEGRCVLFCKEEIANFVETQLTKVGRTGVKL----MPAGSFPLPEGQRFEELSF 176
Query: 245 --ASLRVDALASAGFKLSRSKLVNLIRYSSLASLVQISAKASAI 286
AS R+D + + SR K L + ++ SA+
Sbjct: 177 TVASNRLDCAVACFVRSSREKSRQLFSQGLVTHNYEVEKSLSAV 220
>gi|365135099|ref|ZP_09343624.1| hypothetical protein HMPREF1032_01420 [Subdoligranulum sp.
4_3_54A2FAA]
gi|363613069|gb|EHL64593.1| hypothetical protein HMPREF1032_01420 [Subdoligranulum sp.
4_3_54A2FAA]
Length = 254
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 71/148 (47%), Gaps = 11/148 (7%)
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
GGYP AER R+ E +P L + +H D+LG+++ GI RE I
Sbjct: 61 DGGYPDAER-RILRLFGEYGAQEPLPAVCLFAQTLRADRALTHRDYLGALMSLGIRRECI 119
Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRI----PLLALEYEPPRTKSFK 241
GDI+L E GA V+ +A + L VG SV C R L E P +T +
Sbjct: 120 GDILLS-EDGAYLFVLDTVAPLVCDELSSVGRCSV-CVRAGRAEELPGREERPAQTATV- 176
Query: 242 TIEASLRVDALASAGFKLSRSKLVNLIR 269
ASLR+DA+ +A +SR V L++
Sbjct: 177 ---ASLRLDAVLAAMLHISRGDAVQLVK 201
>gi|331001804|ref|ZP_08325326.1| hypothetical protein HMPREF0491_00188 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330412778|gb|EGG92161.1| hypothetical protein HMPREF0491_00188 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 249
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 95/194 (48%), Gaps = 23/194 (11%)
Query: 84 ILEMARRASSRREVLHSDFLT--PPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
IL++AR+A + V +S FL + E + +L ++K + GGY +AER +
Sbjct: 12 ILDLARKAYFKNVVTYSAFLNLYEQTIFEQIQ--NELPNIKNIMFGGYSEAERKIVCFYF 69
Query: 142 PEALTSDPDIVAALSITGNFGFQPC--------SHGDFLGSILGTGIAREKIGDIILQGE 193
E D D++ + I PC +H DFLG+++ GI R IGDI + +
Sbjct: 70 DE--IPDFDMLEYIKIF------PCNKKFADNLTHRDFLGALMNLGIERHMIGDICID-D 120
Query: 194 KGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALA 253
A + +++ +I L V + V + + +L+ R ++ + +S R+D++
Sbjct: 121 NTAHIITFKTMSETIINDLSMVKHTKVVLEKENIDSLK-NINRLENKRINISSERLDSII 179
Query: 254 SAGFKLSRSKLVNL 267
+ + +SRSK VNL
Sbjct: 180 GSIYNISRSK-VNL 192
>gi|313890772|ref|ZP_07824397.1| S4 domain protein [Streptococcus pseudoporcinus SPIN 20026]
gi|416851507|ref|ZP_11908652.1| S4 domain protein [Streptococcus pseudoporcinus LQ 940-04]
gi|313120873|gb|EFR43987.1| S4 domain protein [Streptococcus pseudoporcinus SPIN 20026]
gi|356738996|gb|EHI64228.1| S4 domain protein [Streptococcus pseudoporcinus LQ 940-04]
Length = 262
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 93/206 (45%), Gaps = 4/206 (1%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
++ I ++ +R ++FL P + E + + +D + + E R+ +
Sbjct: 18 IEKIQDIIQRVEDSYSFYLTEFLNPRQV-EILKIVVASSDCHCFSSSDFYHTEYGRVIIA 76
Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQF 198
++ D +A + I+ N F H LG+ + GI R +GDI++ AQ
Sbjct: 77 PDYYQLNEGDFELAVVDISYNAKFNTIKHAQILGTFIHELGIQRSLLGDILV-APGHAQV 135
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
+ + Y IT++ K+ SV+ + L L + + + +SLR+D L + FK
Sbjct: 136 MTTKSMLSYAITNISKIARASVTLKEVSLENLIQTNVGEEHLELLFSSLRLDVLIANVFK 195
Query: 259 LSRSKLVNLIRYSSLASLVQISAKAS 284
LSRS+ + L+ + +IS KAS
Sbjct: 196 LSRSQAIKLVESEKVKINYRISRKAS 221
>gi|312869508|ref|ZP_07729663.1| S4 domain protein [Lactobacillus oris PB013-T2-3]
gi|417885433|ref|ZP_12529587.1| S4 domain protein [Lactobacillus oris F0423]
gi|311094955|gb|EFQ53244.1| S4 domain protein [Lactobacillus oris PB013-T2-3]
gi|341595355|gb|EGS38004.1| S4 domain protein [Lactobacillus oris F0423]
Length = 260
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 87/195 (44%), Gaps = 4/195 (2%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSV- 139
+ + + AS + + + FL P + +VK + GG+ AE R+
Sbjct: 17 IDQVADWISTASGQYRPVLTSFLNPRQRYIARTMANAADEVKMASAGGWAGAEMQRVLFY 76
Query: 140 -GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+ + T+D ++ L I F H +G+++G G+ R GDI L G+ Q
Sbjct: 77 PTYYQPTTADFEL-RVLEINYPTKFTEFHHRQIMGTLIGEGLERAAFGDI-LGGQGRWQV 134
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
+V +A YL ++ +G V + + + + + T +SLR+DA+ +AGF
Sbjct: 135 VVTTAMAKYLRANVSHIGRVKIKWQPVEAANVLHPVEDWEPLTTTVSSLRLDAVVAAGFN 194
Query: 259 LSRSKLVNLIRYSSL 273
SR++ L+ + +
Sbjct: 195 YSRNRAKQLVEHGQV 209
>gi|325680294|ref|ZP_08159854.1| S4 domain protein [Ruminococcus albus 8]
gi|324108003|gb|EGC02259.1| S4 domain protein [Ruminococcus albus 8]
Length = 259
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 92/197 (46%), Gaps = 24/197 (12%)
Query: 84 ILEMARRASSRREVLHSDFLTPPVLK--ESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
L+ A + HS FL + E +MA K + + GGY AER L V +
Sbjct: 22 FLDWTEMAEEKYITKHSAFLDERQCRLCEKVMASVKYENY--LLWGGYEGAERKMLCV-Y 78
Query: 142 PEALTSDPDIVAALSITG-NFGFQ---PCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
P+ D DI ++ +T F ++ SH DFLGS++ GI R+ +GDI++ + +
Sbjct: 79 PQY--GDEDIKSSFPMTAVTFKYRSEDKLSHRDFLGSLMALGITRDCVGDILVGDGRTSV 136
Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEP-----PRTKSFKTIEASLRVDAL 252
F V + A + S+ K+G V V ++P P + ASLR+D++
Sbjct: 137 F--VKDTAARDVMSVSKIGRVGVKTED------GFDPSTVIMPEFREITGTVASLRLDSV 188
Query: 253 ASAGFKLSRSKLVNLIR 269
S ++SR K LI+
Sbjct: 189 LSLALRISREKASALIK 205
>gi|257125826|ref|YP_003163940.1| RNA-binding S4 domain-containing protein [Leptotrichia buccalis
C-1013-b]
gi|257049765|gb|ACV38949.1| RNA-binding S4 domain protein [Leptotrichia buccalis C-1013-b]
Length = 298
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGE--KGAQFLVVPE-LADYLITS 211
L I+ + F+ SH DFLGS++G I RE +GD+IL+ E K + ++ V E +ADY+I+
Sbjct: 126 LKISIDSRFREYSHKDFLGSLMGLNIKRELMGDLILENEGRKISGYIPVSEKIADYIISE 185
Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA-SLRVDALASAGFKLSRSKLV 265
L+++G S I P K I S R+D++ S LSR+K++
Sbjct: 186 LKQIGKASCEIEIIDTKNKNVLPQYKYDNKLITVPSKRLDSIISTITNLSRTKVI 240
>gi|421892503|ref|ZP_16323156.1| FIG001583: hypothetical protein, contains S4-like RNA binding
domain [Streptococcus pyogenes NS88.2]
gi|379981755|emb|CCG26878.1| FIG001583: hypothetical protein, contains S4-like RNA binding
domain [Streptococcus pyogenes NS88.2]
Length = 239
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 93/191 (48%), Gaps = 12/191 (6%)
Query: 100 SDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSV--GHPEALTSDPDIVAAL 155
++FL P +E M+ +L L D+K Y +E R+ + G+ + SD I A +
Sbjct: 14 TEFLNP---REVMILKSLIALTDLKMFVSTDYYPSEYGRVIIAPGYYDLEQSDFQI-ALV 69
Query: 156 SITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFLVVPELADYLITSLE 213
I+ F +H LG+++ G+ R GD+ + E G AQ ++ EL DY + ++
Sbjct: 70 EISYQAKFNQLTHSQILGTLINELGVKRNLFGDVFV--EMGYAQLMIKRELLDYFLGTIT 127
Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSL 273
K+ SV + L +++ + +S R+D + + K SR++++ LI + +
Sbjct: 128 KITKTSVKLREVNFDQLIRSIDNSQTLDILVSSFRLDGVVAIILKKSRTQVIALIEANKI 187
Query: 274 ASLVQISAKAS 284
+++ KAS
Sbjct: 188 KVNYRLANKAS 198
>gi|421187378|ref|ZP_15644738.1| cell division protein [Oenococcus oeni AWRIB419]
gi|421193757|ref|ZP_15651003.1| cell division protein [Oenococcus oeni AWRIB553]
gi|399969177|gb|EJO03600.1| cell division protein [Oenococcus oeni AWRIB419]
gi|399971916|gb|EJO06155.1| cell division protein [Oenococcus oeni AWRIB553]
Length = 256
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 81/168 (48%), Gaps = 7/168 (4%)
Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG-HPEALTSDPDIVAALSITGN 160
FL P K ++ L K GGY +AE R +G H E +D I + L +
Sbjct: 38 FLNPQEQK-ILLELAKKTGFSVRFDGGYQKAENKRALIGDHKE---NDFQI-SLLQLNYA 92
Query: 161 FGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSV 220
+ H LGS+L GI+ ++IGD+I + + Q L+ LAD+++ ++++ + +
Sbjct: 93 SHYVHLHHSTVLGSLLHHGISYDRIGDVIHEND-NWQLLIDSSLADFVVENVKRAASKKI 151
Query: 221 SCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+ +IP + K + + +S R+D L S + SR+ +LI
Sbjct: 152 TFEKIPFEKILNPQSDEKEKEIVISSQRIDLLISQIYNFSRAHAKDLI 199
>gi|76798282|ref|ZP_00780529.1| ylmH protein [Streptococcus agalactiae 18RS21]
gi|76586354|gb|EAO62865.1| ylmH protein [Streptococcus agalactiae 18RS21]
Length = 179
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 2/118 (1%)
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLIT 210
++ + I N F +H +G++L G+ R +GDI+++ E AQ LV ++ ++L+
Sbjct: 6 LSLIEIKYNAKFNHLTHAKIMGTLLNYLGVKRSILGDILVE-EGCAQVLVDSQMTNHLVH 64
Query: 211 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
S+ K+G SV +PL L + I +SLR+D + + K+SR++ LI
Sbjct: 65 SVTKIGTASVQLAEVPLSKLLTPKQDIQKLTVIASSLRLDKILATILKISRTQSTKLI 122
>gi|449920190|ref|ZP_21798378.1| hypothetical protein SMU21_05496 [Streptococcus mutans 1SM1]
gi|449158983|gb|EMB62381.1| hypothetical protein SMU21_05496 [Streptococcus mutans 1SM1]
Length = 262
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 12/175 (6%)
Query: 100 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 154
++FL P V+K S++ KL + + +E RL + + E +D I +
Sbjct: 37 TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91
Query: 155 LSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
L I N F +H LG+++ GI R +GDII+Q E AQ + + YL +
Sbjct: 92 LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150
Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+G +V IP P + + +S+R+D + +A KLSR + LI
Sbjct: 151 KIGKAAVVFEEIPFERQITSQPHIREMNVLVSSMRLDKIIAAVLKLSRRQANQLI 205
>gi|421452185|ref|ZP_15901546.1| RNA binding protein [Streptococcus salivarius K12]
gi|400182616|gb|EJO16878.1| RNA binding protein [Streptococcus salivarius K12]
Length = 267
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 84/176 (47%), Gaps = 13/176 (7%)
Query: 100 SDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERCRLSVGHPE--ALTSDPDIVAA 154
+DFL P + +E+LA ++K E R+ + P+ L D +
Sbjct: 38 TDFLNP----REIQIVEELAHYYNLKFFVSSTLESEEYGRVILA-PDYYELEEDDFEIKR 92
Query: 155 LSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
L I+ F +H LG+++ G+ R+ GDIIL E QF + LA Y I ++
Sbjct: 93 LEISYARQFNKLTHPKVLGALINQLGLDRQVFGDIILDEEGRVQFYIASHLASYAIMTIT 152
Query: 214 KVGNVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+GNVSV+ + + + +K+F + +S+R+D + S LSRS + LI
Sbjct: 153 KIGNVSVTLKEVSKDDWISNQEKYSKTF-VLLSSMRLDNVLSTVLNLSRSNALKLI 207
>gi|392971788|ref|ZP_10337181.1| S4 domain-containing protein [Staphylococcus equorum subsp. equorum
Mu2]
gi|392510327|emb|CCI60471.1| S4 domain-containing protein [Staphylococcus equorum subsp. equorum
Mu2]
Length = 259
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 90/196 (45%), Gaps = 6/196 (3%)
Query: 75 KNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER 134
K E + +++ RA+ + + + FL P + + D++ GG P AER
Sbjct: 12 KEEHELIDQLMDKCNRANEQYAPILTPFLDPRGQYIMSVIVGSYDDLEVTFFGG-PYAER 70
Query: 135 CRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKIGDIILQG 192
R V P+ L + ++ + + ++ F H LG+I+ GI RE++GDII+
Sbjct: 71 KRAIVA-PDYLVPEEELFEIVLVEIDYPQKFVTLQHQHILGTIMSLGIEREQLGDIIV-- 127
Query: 193 EKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDAL 252
+ QF + +L Y++ L ++ +V IP+ + ++++ + LR+D +
Sbjct: 128 DDSIQFTLTKQLESYIMLELNRIKGATVKLNSIPIKDMIQSKEHWQTYEATVSGLRLDVI 187
Query: 253 ASAGFKLSRSKLVNLI 268
+ SR+ LI
Sbjct: 188 LKEMIRKSRTIAKQLI 203
>gi|295094443|emb|CBK83534.1| Uncharacterized conserved protein, contains S4-like domain
[Coprococcus sp. ART55/1]
Length = 259
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 91/216 (42%), Gaps = 22/216 (10%)
Query: 64 NFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKA 123
N +D+LKG + ++A A + +++FL+ ++ LE+L+
Sbjct: 2 NENDILKG-----------RLKDLANAAFRQNRYTYTNFLSAADMEVFYSNLEQLSFAGY 50
Query: 124 VAQGGYPQAERCRLSVGHPEALTSDPDI----VAALSITGNFGFQPCSHGDFLGSILGTG 179
GG +R + G+ P + +++ F +H DFLG+++ G
Sbjct: 51 TIFGGRESCDRVMIVFGNEADCGYAPAFPICTMKVSAVSDKFS-DDLNHRDFLGALMNLG 109
Query: 180 IAREKIGDIILQ------GEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYE 233
I RE +GDI++ A V +ADY+ +L K+ + +V CT +
Sbjct: 110 IEREMVGDILVTESTHSGKHNNAYIFCVDTVADYIAENLTKIRHTNVKCTFCSTQDTDEI 169
Query: 234 PPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIR 269
+ + I AS R DA+ + LSRS L R
Sbjct: 170 QIKKEPLHIIAASARADAVTATITGLSRSSTSLLFR 205
>gi|424049918|ref|ZP_17787469.1| S4 domain-containing protein [Streptococcus agalactiae ZQ0910]
gi|389648593|gb|EIM70092.1| S4 domain-containing protein [Streptococcus agalactiae ZQ0910]
Length = 179
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 2/118 (1%)
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLIT 210
++ + I N F +H +G++L G+ R +GDI+++ E AQ LV ++ ++L+
Sbjct: 6 LSLIEIKYNAKFNHLTHAKIMGTLLNYLGVKRSILGDILVE-EGCAQVLVDSQMTNHLVH 64
Query: 211 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
S+ K+G SV +PL L + I +SLR+D + + K+SR++ LI
Sbjct: 65 SVTKIGTASVQLAEVPLSKLLTPKQDIQKLTVIASSLRLDKILATILKISRTQSTKLI 122
>gi|197301723|ref|ZP_03166793.1| hypothetical protein RUMLAC_00449 [Ruminococcus lactaris ATCC
29176]
gi|197299163|gb|EDY33693.1| S4 domain protein [Ruminococcus lactaris ATCC 29176]
Length = 270
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 94/208 (45%), Gaps = 26/208 (12%)
Query: 70 KGVGDKNAIEEV----KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLAD---VK 122
K + N+ +EV + +++++R A R + +DFL L E + D
Sbjct: 3 KNYSNGNSEKEVHLLERRLIDLSRVAYQRDIITFTDFLN---LNEQNILHTLPKDSLYTG 59
Query: 123 AVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPC-------------SHG 169
+ GGY AER +++ PEAL+ L + FQ +H
Sbjct: 60 YILFGGYASAER-QMAAFIPEALSLRYGKKNLLPEELGYPFQAVEICPRNIRFAEDLTHR 118
Query: 170 DFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLA 229
DFLG+IL GI R + GDI+L+ E A E+A+ + L V + V C L
Sbjct: 119 DFLGAILNLGIERSRTGDILLE-EHRAYLFAQTEIAELVSRELSNVRHTPVKCRLTELEG 177
Query: 230 LEYEPPRTKSFKTIEASLRVDALASAGF 257
+EY PRT++ + +S+R+D+L F
Sbjct: 178 VEY-VPRTEAVRGTVSSVRLDSLLPLAF 204
>gi|403745293|ref|ZP_10954231.1| hypothetical protein URH17368_1533 [Alicyclobacillus hesperidum
URH17-3-68]
gi|403121521|gb|EJY55814.1| hypothetical protein URH17368_1533 [Alicyclobacillus hesperidum
URH17-3-68]
Length = 256
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 86/192 (44%), Gaps = 21/192 (10%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLS 138
+K + + A +R +DFLTP +E +A V GGY AER R+
Sbjct: 15 LKQVEDWAAHVHARGTWYLTDFLTP---RERWIAESAARHSGLVTSDFGGYTDAERVRML 71
Query: 139 V----GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEK 194
+ HPEA SD DI L+IT QP H D LGS+LG GI R+ +GDI + +K
Sbjct: 72 LMPEDWHPEA--SDYDI-KCLAITALE--QPIRHRDVLGSVLGLGIQRKTVGDIAVFDQK 126
Query: 195 GAQFLVVPELADYLITSLEKVGNVSVSCTRI---PLLALEYEPPRTKSFKTIEASLRVDA 251
A + +L L +VG V + P L PP + S R+DA
Sbjct: 127 RAYVFATSAMGSFLARELHRVGRGVVEVVLLEDPPQLP----PPAYEEQDIFVMSPRIDA 182
Query: 252 LASAGFKLSRSK 263
+ + LSR+
Sbjct: 183 IVAQACHLSRAN 194
>gi|418324603|ref|ZP_12935837.1| S4 domain protein [Staphylococcus pettenkoferi VCU012]
gi|365225290|gb|EHM66535.1| S4 domain protein [Staphylococcus pettenkoferi VCU012]
Length = 259
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 10/146 (6%)
Query: 127 GGYPQAERCRLSVGHPEALTSDPDI----VAALSITGNFGFQPCSHGDFLGSILGTGIAR 182
GGY AER R + P +PDI V + +T F H LG+I+ GI R
Sbjct: 64 GGY-HAERQRAIIA-PSYY--EPDIEDFEVVLIEVTYPKKFVTIQHQHVLGTIMSMGIER 119
Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 242
E++GDI++ + QF++ +L Y++ L ++ +V IP + K+F
Sbjct: 120 EQLGDILVN--ETIQFVLAKQLESYMMLELTRIKGATVKLNSIPFKDMIQSKEEWKAFHA 177
Query: 243 IEASLRVDALASAGFKLSRSKLVNLI 268
++LR+D + + SRS LI
Sbjct: 178 TVSALRLDVVLKEMIRKSRSIAKQLI 203
>gi|169351196|ref|ZP_02868134.1| hypothetical protein CLOSPI_01975 [Clostridium spiroforme DSM 1552]
gi|169292258|gb|EDS74391.1| S4 domain protein [Clostridium spiroforme DSM 1552]
Length = 252
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 91/194 (46%), Gaps = 12/194 (6%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
VK ILE +A R+ ++ + FL P + K ++ + GG +E R+ +
Sbjct: 12 VKKILEFKDQALDRQRIVLTKFLNPYHQSIVHSVIGKSDELIVLENGGLINSETKRMIIA 71
Query: 141 --HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+ + D +IV + IT F +H D LG+++ G+ RE GDI E F
Sbjct: 72 PAYYQIEQDDFEIVL-VKITYAKPFGKLTHRDILGALMSLGVKRELFGDIY---EYHDVF 127
Query: 199 LVVPELA--DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT-IEASLRVDALASA 255
VV +L DY+ +L + + S ++ L E + KT I +S R+D + S+
Sbjct: 128 YVVMDLKIYDYVKNNLNLIKH---SKVKLSLSNESIEIIHQYTCKTFIVSSFRLDKIVSS 184
Query: 256 GFKLSRSKLVNLIR 269
+ L RSK VN IR
Sbjct: 185 IYNLPRSKAVNYIR 198
>gi|403046887|ref|ZP_10902356.1| S4 domain-containing protein YlmH [Staphylococcus sp. OJ82]
gi|402763583|gb|EJX17676.1| S4 domain-containing protein YlmH [Staphylococcus sp. OJ82]
Length = 259
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 90/196 (45%), Gaps = 6/196 (3%)
Query: 75 KNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER 134
K E + +++ RA+ + + + FL P + + D++ GG P AER
Sbjct: 12 KEEHELIDQLMDKCNRANEQYAPILTPFLDPRGQYIMSVIVGSYDDLEVTFFGG-PYAER 70
Query: 135 CRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKIGDIILQG 192
R V P+ L + ++ + + ++ F H LG+I+ GI RE++GDII+
Sbjct: 71 KRAIVA-PDYLMPEEELFEIVLVEIDYPQKFVTLQHQHILGTIMSLGIEREQLGDIIV-- 127
Query: 193 EKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDAL 252
+ QF + +L Y++ L ++ +V IP+ + ++++ + LR+D +
Sbjct: 128 DDSIQFTLTKQLESYIMLELNRIKGATVKLNSIPIKDMIQSKEHWQTYEATVSGLRLDVI 187
Query: 253 ASAGFKLSRSKLVNLI 268
+ SR+ LI
Sbjct: 188 LKEMIRKSRTIAKQLI 203
>gi|315283065|ref|ZP_07871338.1| S4 domain-containing protein, partial [Listeria marthii FSL S4-120]
gi|313613292|gb|EFR87163.1| S4 domain-containing protein [Listeria marthii FSL S4-120]
Length = 163
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 5/121 (4%)
Query: 163 FQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSC 222
F +H LG+++ G+ R+ GDI L + Q LV + DYL LEKVG V+V
Sbjct: 4 FTTLTHQKILGTLMSLGMKRDIFGDI-LNKDTEWQLLVESSMKDYLTLQLEKVGKVNVML 62
Query: 223 TRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSLASLVQISAK 282
L Y P + +S+R+D + S +SR K L+ +A LV+++ K
Sbjct: 63 EETELANAVYAPVIWEEMGLTVSSMRLDVIISNAHHISRQKAKQLV----VAGLVKVNWK 118
Query: 283 A 283
Sbjct: 119 T 119
>gi|417004699|ref|ZP_11943338.1| hypothetical protein FSLSAGS3026_02848 [Streptococcus agalactiae
FSL S3-026]
gi|341577681|gb|EGS28088.1| hypothetical protein FSLSAGS3026_02848 [Streptococcus agalactiae
FSL S3-026]
Length = 179
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 2/118 (1%)
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLIT 210
++ + I N F +H +G++L G+ R +GDI+++ E AQ LV ++ ++L+
Sbjct: 6 LSLIEIKYNAKFNHLTHAKIMGTLLNYLGVKRSILGDILVE-EGCAQVLVDSQMTNHLVH 64
Query: 211 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
S+ K+G SV +PL L + I +SLR+D + + K+SR++ LI
Sbjct: 65 SVTKIGTASVQLAEVPLSKLLTPKQDIQKLTVIASSLRLDKILATILKISRTQSTKLI 122
>gi|387786614|ref|YP_006251710.1| hypothetical protein SMULJ23_1433 [Streptococcus mutans LJ23]
gi|379133015|dbj|BAL69767.1| hypothetical protein SMULJ23_1433 [Streptococcus mutans LJ23]
Length = 263
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 12/175 (6%)
Query: 100 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 154
++FL P V+K S++ KL + + +E RL + + E +D I +
Sbjct: 38 TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 92
Query: 155 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
L I N F +H LG+++ GI R +GDII+Q E AQ + + YL +
Sbjct: 93 LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 151
Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+G +V IP K + +S+R+D + +A KLSR K LI
Sbjct: 152 KIGKATVVFEEIPFERQITSQSHIKEMNVLVSSMRLDKIIAAVLKLSRRKANQLI 206
>gi|400290788|ref|ZP_10792815.1| hypothetical protein SRA_07661 [Streptococcus ratti FA-1 = DSM
20564]
gi|399921579|gb|EJN94396.1| hypothetical protein SRA_07661 [Streptococcus ratti FA-1 = DSM
20564]
Length = 262
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 88/193 (45%), Gaps = 9/193 (4%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
E V+ ++ ++A +DFL P + M ++ D+K + +E RL
Sbjct: 16 ELVEKAYDLIKQAEDTYSFCLTDFLNPREIA-VMKSIVGQTDLKCYVSSDFIPSEYARLL 74
Query: 139 VGHPEALTSD-PDI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG 195
+ P + D D ++ L I N F +H +G+++ GI R +GDI++Q E
Sbjct: 75 IA-PAYYSLDLADFGISLLDIKYNSKFNHLTHAQIMGTLINKLGIERHILGDILVQ-ENR 132
Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASA 255
AQ V + YL + K+G +V +P TK + +S+R+D + +A
Sbjct: 133 AQVFVEKSMVSYLSIQVSKIGRAAVIFEEVPFDRQLENQSSTKEVDILASSMRLDKIIAA 192
Query: 256 GFKLSR---SKLV 265
K+SR SKL+
Sbjct: 193 VLKISRGTASKLI 205
>gi|397649283|ref|YP_006489810.1| hypothetical protein SMUGS5_02445 [Streptococcus mutans GS-5]
gi|449863370|ref|ZP_21778216.1| hypothetical protein SMU101_01210 [Streptococcus mutans U2B]
gi|449870286|ref|ZP_21780576.1| hypothetical protein SMU10_03291 [Streptococcus mutans 8ID3]
gi|449908651|ref|ZP_21793875.1| hypothetical protein SMU109_02338 [Streptococcus mutans OMZ175]
gi|449996502|ref|ZP_21823564.1| hypothetical protein SMU54_05838 [Streptococcus mutans A9]
gi|392602852|gb|AFM81016.1| hypothetical protein SMUGS5_02445 [Streptococcus mutans GS-5]
gi|449156828|gb|EMB60286.1| hypothetical protein SMU10_03291 [Streptococcus mutans 8ID3]
gi|449183007|gb|EMB85006.1| hypothetical protein SMU54_05838 [Streptococcus mutans A9]
gi|449262788|gb|EMC60231.1| hypothetical protein SMU109_02338 [Streptococcus mutans OMZ175]
gi|449265099|gb|EMC62428.1| hypothetical protein SMU101_01210 [Streptococcus mutans U2B]
Length = 262
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 12/175 (6%)
Query: 100 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 154
++FL P V+K S++ KL + + +E RL + + E +D I +
Sbjct: 37 TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91
Query: 155 LSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
L I N F +H LG+++ GI R +GDII+Q E AQ + + YL +
Sbjct: 92 LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150
Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+G +V IP K + +S+R+D + +A KLSR K LI
Sbjct: 151 KIGKATVVFEEIPFERQITSQSHIKEMNVLVSSMRLDKIIAAVLKLSRRKANQLI 205
>gi|409350244|ref|ZP_11233430.1| S4 domain protein [Lactobacillus equicursoris CIP 110162]
gi|407877568|emb|CCK85488.1| S4 domain protein [Lactobacillus equicursoris CIP 110162]
Length = 266
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 90/194 (46%), Gaps = 21/194 (10%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ + + + R + E + +DFL P K ++ ++ GGY +AE+ R+
Sbjct: 22 IDYFVGLFNRVLYQGEPVLTDFLDPR--KRQILQAVAGGEIMLDEYGGYDEAEKKRVY-- 77
Query: 141 HPEALTSD----PDI---VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGE 193
LTSD P V+ L I+ F H LGS+ +G+ E GDI+ G+
Sbjct: 78 ----LTSDWLPLPKKEFGVSLLEISYPQKFAQLRHSQILGSLANSGVKTETFGDIVTDGQ 133
Query: 194 KGAQFLVVPELADYLITSLEKVGNVSVSCTRIP---LLALEYEPPRTKSFKTIEASLRVD 250
QF EL + ++ ++G V V + LLA+E +K+ + ASLR+D
Sbjct: 134 GRWQFFAEKELVPFFSENIYRMGPVKVKLEEVEMRDLLAIE---DGSKALDGVAASLRLD 190
Query: 251 ALASAGFKLSRSKL 264
A+ +A SR++L
Sbjct: 191 AVLAALSGKSRTQL 204
>gi|408411391|ref|ZP_11182550.1| S4 domain protein [Lactobacillus sp. 66c]
gi|407874400|emb|CCK84356.1| S4 domain protein [Lactobacillus sp. 66c]
Length = 265
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 90/194 (46%), Gaps = 21/194 (10%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ + + + R + E + +DFL P K ++ ++ GGY +AE+ R+
Sbjct: 21 IDYFVGLFNRVLYQGEPVLTDFLDP--RKRQILQAVAGGEIMLDEYGGYDEAEKKRVY-- 76
Query: 141 HPEALTSD----PDI---VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGE 193
LTSD P V+ L I+ F H LGS+ +G+ E GDI+ G+
Sbjct: 77 ----LTSDWLPLPKKEFGVSLLEISYPQKFAQLRHSQILGSLANSGVKTETFGDIVTDGQ 132
Query: 194 KGAQFLVVPELADYLITSLEKVGNVSVSCTRIP---LLALEYEPPRTKSFKTIEASLRVD 250
QF EL + ++ ++G V V + LLA+E +K+ + ASLR+D
Sbjct: 133 GRWQFFAEKELVPFFSENIYRMGPVKVKLEEVEMRDLLAIE---DGSKALDGVAASLRLD 189
Query: 251 ALASAGFKLSRSKL 264
A+ +A SR++L
Sbjct: 190 AVLAALSGKSRTQL 203
>gi|306827038|ref|ZP_07460336.1| S4 domain-containing protein YlmH [Streptococcus pyogenes ATCC
10782]
gi|304430784|gb|EFM33795.1| S4 domain-containing protein YlmH [Streptococcus pyogenes ATCC
10782]
Length = 263
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 96/205 (46%), Gaps = 12/205 (5%)
Query: 86 EMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSV--GH 141
+M R + ++FL P +E M+ +L L D+K Y +E R+ + G+
Sbjct: 24 DMINRVEDYYLLEVTEFLNP---REVMILKSLIALTDLKMFVSTDYYPSEYGRVIIAPGY 80
Query: 142 PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFL 199
+ SD I A + I+ F +H LG+++ G+ R GD+ + E G AQ +
Sbjct: 81 YDLEQSDFQI-ALVEISYQAKFNQLTHSQILGTLINELGVKRNLFGDVFV--EMGYAQLM 137
Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
+ EL DY + ++ K+ SV + L +++ + +S R+D + + K
Sbjct: 138 IKRELLDYFLGTITKIAKTSVKLREVNFDQLIRSIDNSQTLDILVSSFRLDGVVATILKK 197
Query: 260 SRSKLVNLIRYSSLASLVQISAKAS 284
R++++ LI + + +++ KAS
Sbjct: 198 FRTQVIALIEANKIKVNYRLANKAS 222
>gi|449980225|ref|ZP_21817084.1| hypothetical protein SMU50_02473 [Streptococcus mutans 5SM3]
gi|449177243|gb|EMB79553.1| hypothetical protein SMU50_02473 [Streptococcus mutans 5SM3]
Length = 262
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 12/175 (6%)
Query: 100 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 154
++FL P V+K S++ KL + + +E RL + + E +D I +
Sbjct: 37 TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91
Query: 155 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
L I N F +H LG+++ GI R +GDII+Q E AQ + + YL +
Sbjct: 92 LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150
Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+G +V IP K + +S+R+D + +A KLSR K LI
Sbjct: 151 KIGKAAVVFEEIPFERQITSQSHIKEMNVLVSSMRLDKIIAAVLKLSRRKANQLI 205
>gi|24379037|ref|NP_720992.1| hypothetical protein SMU_556 [Streptococcus mutans UA159]
gi|24376932|gb|AAN58298.1|AE014900_6 conserved hypothetical protein [Streptococcus mutans UA159]
Length = 263
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 12/175 (6%)
Query: 100 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 154
++FL P V+K S++ KL + + +E RL + + E +D I +
Sbjct: 38 TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 92
Query: 155 LSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
L I N F +H LG+++ GI R +GDII+Q E AQ + + YL +
Sbjct: 93 LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 151
Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+G +V IP K + +S+R+D + +A KLSR K LI
Sbjct: 152 KIGKATVVFEEIPFERQITSQSHIKEMNVLVSSMRLDKIIAAVLKLSRRKANQLI 206
>gi|421765864|ref|ZP_16202644.1| hypothetical protein C426_0211 [Lactococcus garvieae DCC43]
gi|407625634|gb|EKF52329.1| hypothetical protein C426_0211 [Lactococcus garvieae DCC43]
Length = 265
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 65/124 (52%), Gaps = 3/124 (2%)
Query: 147 SDPDIVAALSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELA 205
D D+V L I+ + H LGS LG TGI R +IGDI+L E+ AQ V L
Sbjct: 85 DDFDLVL-LEISYANKYYHLKHSQILGSFLGQTGIRRTEIGDIVLNDER-AQIFVSRHLL 142
Query: 206 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 265
+ ++EK+G+ +V P L + + +SLR+D + ++ F++SR+ V
Sbjct: 143 EIFQKNIEKIGSATVQFVEKPFTELIKTEATSIVKVVLVSSLRIDKIVASTFEISRNIAV 202
Query: 266 NLIR 269
N+++
Sbjct: 203 NMLQ 206
>gi|340399072|ref|YP_004728097.1| cell division protein, contains S4-like domain [Streptococcus
salivarius CCHSS3]
gi|387761540|ref|YP_006068517.1| RNA binding protein [Streptococcus salivarius 57.I]
gi|338743065|emb|CCB93573.1| cell division protein, contains S4-like domain [Streptococcus
salivarius CCHSS3]
gi|339292307|gb|AEJ53654.1| RNA binding protein [Streptococcus salivarius 57.I]
Length = 267
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 84/176 (47%), Gaps = 13/176 (7%)
Query: 100 SDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAA 154
+DFL P + +E+LA ++K E R+ + PE D D +
Sbjct: 38 TDFLNP----REIQIVEELAHYYNLKFFVSSTLESEEYGRVILA-PEYYELDDDDFEIKR 92
Query: 155 LSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
L I+ F +H LG+++ G+ R+ GDIIL E QF + LA Y I ++
Sbjct: 93 LEISYARQFNKLTHPKVLGALINQLGLDRQVFGDIILDEEGRVQFSIASHLASYAIMTIT 152
Query: 214 KVGNVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+GNVSV+ + + + ++SF + +S+R+D + + LSRS + LI
Sbjct: 153 KIGNVSVTLKEVSKDDWISNQENYSQSF-VLLSSMRLDNVLATVLNLSRSNALKLI 207
>gi|375088332|ref|ZP_09734672.1| hypothetical protein HMPREF9703_00754 [Dolosigranulum pigrum ATCC
51524]
gi|374562370|gb|EHR33700.1| hypothetical protein HMPREF9703_00754 [Dolosigranulum pigrum ATCC
51524]
Length = 260
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 66/144 (45%), Gaps = 4/144 (2%)
Query: 127 GGYPQAERCRLSV--GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GG ER R + + E + DI A I+ F SH D LG+ILGTGI R+K
Sbjct: 62 GGTTGTERQRALIKPSYIEDVKGHYDI-ALCEISYPEKFSQLSHRDILGAILGTGIDRKK 120
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
+GDII Q + Q V L +L + VG +VS PL + +
Sbjct: 121 LGDII-QDDGRWQLFVDASLVSFLTLHVTTVGRTTVSLIEKPLKEAVPINEHWQKKNIVI 179
Query: 245 ASLRVDALASAGFKLSRSKLVNLI 268
+S R+D + G ++SR + LI
Sbjct: 180 SSRRLDVFIAGGLRISRDQAKQLI 203
>gi|365904414|ref|ZP_09442173.1| hypothetical protein LverK3_02439 [Lactobacillus versmoldensis KCTC
3814]
Length = 266
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 3/151 (1%)
Query: 115 LEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAAL-SITGNFGFQPCSHGDFLG 173
+ K D+ GGY AER R + + D L + F HG LG
Sbjct: 56 VNKYDDLFVHYYGGYEGAERVRGMIAPDYFVPQQEDFHEQLFEVRYPEKFANLHHGQILG 115
Query: 174 SILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYE 233
S+ G GI R+ GDII G++ QF +++YL ++K+G + + +
Sbjct: 116 SLTGAGIDRDHFGDIITDGKR-WQFFAFDNISNYLEEQVDKIGPFKIHLIKKDIQNDLLM 174
Query: 234 PPRTKSFKTIEA-SLRVDALASAGFKLSRSK 263
P +TI SLR+D L + + +SR++
Sbjct: 175 PIDDSEDETINVQSLRIDTLIAEVYGMSRTQ 205
>gi|313884820|ref|ZP_07818572.1| S4 domain protein [Eremococcus coleocola ACS-139-V-Col8]
gi|312619511|gb|EFR30948.1| S4 domain protein [Eremococcus coleocola ACS-139-V-Col8]
Length = 262
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 79/169 (46%), Gaps = 10/169 (5%)
Query: 100 SDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAA 154
S FLTP +++M+ + + DVK GG AER R + +P+ + + A
Sbjct: 38 SPFLTP---RQAMIVSQLVGTNEDVKVAFWGGCEGAERKRALI-YPQYYEVNEASFEIQA 93
Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 214
+I F +HG LG+ TG+ R++ GDII G +V + ++ ++++ K
Sbjct: 94 FNINFPLKFGQLTHGRILGTFTSTGVDRDRTGDIITDG-TSWHVIVDASMTEFYMSNITK 152
Query: 215 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 263
+ NV V I + +S + +SLR+D L S + SR +
Sbjct: 153 IANVGVHLEPIASDEILQSDESWESVFLVASSLRLDTLLSKVYNFSRQR 201
>gi|227484957|ref|ZP_03915273.1| ribosomal protein S4e [Anaerococcus lactolyticus ATCC 51172]
gi|227237112|gb|EEI87127.1| ribosomal protein S4e [Anaerococcus lactolyticus ATCC 51172]
Length = 255
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 97/215 (45%), Gaps = 12/215 (5%)
Query: 69 LKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGG 128
L + DK ++ L + +A +R + S F P ++++ + +K GG
Sbjct: 7 LDHISDKQKKTNIRKALSILEKAFYKRIEIKS-FFLDPFEQKTIAEIANKNSIKICFLGG 65
Query: 129 YPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDI 188
AER + +P+ ++ + F Q SH D LG++L G R IGDI
Sbjct: 66 NVDAERKIFVANYFYEPLYEPNYISVME----FESQDISHPDVLGALLSLGTDRNDIGDI 121
Query: 189 -ILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASL 247
IL G+ +F + + AD++ +L K+ N ++ + L+ P +S +SL
Sbjct: 122 SILDGK--VEFAISLDQADFVEFNLSKIKNERITLIKKEDAKLDLIKPSYESHDGFVSSL 179
Query: 248 RVDALASAGFKLSRSKLVNLIRYSSLASLVQISAK 282
R+D L SR++ ++++ A LV++ +
Sbjct: 180 RLDNLLGLILSTSRTRAKDIVK----ARLVKVDYQ 210
>gi|433446185|ref|ZP_20410244.1| S4 domain protein [Anoxybacillus flavithermus TNO-09.006]
gi|432000481|gb|ELK21375.1| S4 domain protein [Anoxybacillus flavithermus TNO-09.006]
Length = 257
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 79/170 (46%), Gaps = 2/170 (1%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAAL-SIT 158
+DFLTP + + DV GG ER R + P ++ D +L SI
Sbjct: 34 TDFLTPREQQIVRSIVGHHDDVHVAFFGGSSSVERKRALLYPPYMQPNEEDFQLSLFSIR 93
Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 218
F H D LG++L G+ REK GDII+ + QF+V E+A ++ ++ +G
Sbjct: 94 YPKKFVTLGHRDVLGALLSLGVKREKFGDIIIVDD-VIQFVVAKEIAPFVQMNVTTIGKA 152
Query: 219 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
VS L L + + +SLR+DA+ + F++SR K LI
Sbjct: 153 KVSLEEQLLSQLLVVEEQWEEETFTVSSLRLDAILAQCFRISRQKAQALI 202
>gi|395239332|ref|ZP_10417212.1| S4 domain protein [Lactobacillus gigeriorum CRBIP 24.85]
gi|394476427|emb|CCI87189.1| S4 domain protein [Lactobacillus gigeriorum CRBIP 24.85]
Length = 265
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 13/196 (6%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERC 135
+E+ ++ + + L +DFL P +L+E ++ E D GGYP AE+
Sbjct: 17 KEIDDLIALYNQVEYHDNDLLTDFLDPGQIHILRE-IIGNEFFID----DFGGYPDAEKR 71
Query: 136 RLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEK 194
R+ + ++ D + A + F H D LGS+ +GI GDII
Sbjct: 72 RVYISERDSEIKPEDFQITAFEVEYANKFIQLRHSDILGSLANSGIELGTFGDIIHDESG 131
Query: 195 GAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE--ASLRVDAL 252
QF EL + + ++++G V + E P S + E +SLR+D++
Sbjct: 132 RWQFFAKTELRPFFLEQIDRIGRNKVRIREVA--GKEIIIPEDTSIEKDEIVSSLRLDSI 189
Query: 253 ASAGFKLSRSKLVNLI 268
+ +LSR+K+ ++I
Sbjct: 190 LAGISRLSRTKIKDVI 205
>gi|406670577|ref|ZP_11077822.1| hypothetical protein HMPREF9706_00082 [Facklamia hominis CCUG
36813]
gi|405582093|gb|EKB56099.1| hypothetical protein HMPREF9706_00082 [Facklamia hominis CCUG
36813]
Length = 261
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 6/171 (3%)
Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSITG 159
FLTP + + + + D+K GG +E R ++ +P D ++ L I
Sbjct: 38 FLTPRQCRIVLQLVNRQDDIKVKFYGGKIGSESQR-ALIYPNYYQVQEDDFGLSYLQIDY 96
Query: 160 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 219
F SH LG+ L GI R ++GDI G+ Q +V ++ DY +L K+ +
Sbjct: 97 PIKFGDLSHSKILGAFLALGIDRNRLGDIFTNGQV-WQVVVDQKMLDYFKQNLVKIDHFG 155
Query: 220 VSCTRIPLLALEYEPPRTKSFKTI-EASLRVDALASAGFKLSRSKLVNLIR 269
+ + L +P F+ I +SLR+D+L S+ F +SR + ++I+
Sbjct: 156 IKLKELDSSQL-VDPIDEWEFEVITSSSLRLDSLISSIFHISRQRSKDMIK 205
>gi|322372692|ref|ZP_08047228.1| YlmH protein [Streptococcus sp. C150]
gi|321277734|gb|EFX54803.1| YlmH protein [Streptococcus sp. C150]
Length = 267
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 84/175 (48%), Gaps = 11/175 (6%)
Query: 100 SDFLTPPVLKESMMALEKLAD---VKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAAL 155
+DFL P + +E LA+ +K E R+ + SD D + L
Sbjct: 38 TDFLNP----REIQIVEDLANYYQLKFFVSSNLETEEYRRVIIAPDYYELSDDDFEIKRL 93
Query: 156 SITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 214
++ F +H LG+++ G+ R+ GDII+ + QF + LA+Y I +++K
Sbjct: 94 EVSYARQFNTLTHPKVLGTLINQLGLERQVFGDIIINDDGRIQFSIASHLANYAIMTIKK 153
Query: 215 VGNVSVSCTRIPL-LALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+GNVSV+ + + + + SF + +S+R+D + + LSRS+ + LI
Sbjct: 154 IGNVSVTLKDVSEGNWITNQENYSHSF-VLLSSMRLDNVLATVLNLSRSRALKLI 207
>gi|167771412|ref|ZP_02443465.1| hypothetical protein ANACOL_02778 [Anaerotruncus colihominis DSM
17241]
gi|167666052|gb|EDS10182.1| S4 domain protein [Anaerotruncus colihominis DSM 17241]
Length = 253
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 66/149 (44%), Gaps = 14/149 (9%)
Query: 127 GGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPC---SHGDFLGSILGTGIARE 183
GGYP AER L P PD + + G++ H D LGS+ G I RE
Sbjct: 59 GGYPGAERVMLGAFAP---YEQPDETSFPIVPLTIGYRAQDAPGHRDLLGSLTGLAIGRE 115
Query: 184 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVS-CTRIPLLALEYEPP--RTKSF 240
IGDI++ GE F V +A ++ L+K G V C +P E P R
Sbjct: 116 AIGDILVGGEYAVCF-VSSAVAPVILNELKKAGRCGVRVCEGMP----EVLPALHRYADL 170
Query: 241 KTIEASLRVDALASAGFKLSRSKLVNLIR 269
I SLR+D + +A LSR K IR
Sbjct: 171 PLIVTSLRLDCMVAAVAGLSREKAAQAIR 199
>gi|116618583|ref|YP_818954.1| cell division protein [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|116097430|gb|ABJ62581.1| Cell division protein, S4-like domain [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
Length = 265
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 88/191 (46%), Gaps = 4/191 (2%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
VK + + +++ + + + FL P + + AD+ GG AE R +
Sbjct: 20 VKQVDDWIQQSRNEYRSILTRFLNPREQYILNVLVNHAADLAVYFNGGVQGAESQRAILI 79
Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL-QGEKGAQF 198
E D + ++ L I F H LGS++ +GI+R IGDI+ Q Q
Sbjct: 80 PKEYPQDDLEFEISLLEIKYPTKFDDLHHSTILGSMMYSGISRNVIGDILYDQTHSRWQI 139
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPL-LALEYEPPRTKSFKTIEASLRVDALASAGF 257
++ ++ Y+ + K+G+V VS L L + ++F + +SLR+D + SAGF
Sbjct: 140 IIDSKMQHYMQQMVTKIGHVQVSLIECDLNNVLPHINDWEENFLLL-SSLRLDTVISAGF 198
Query: 258 KLSRSKLVNLI 268
LSRS LI
Sbjct: 199 DLSRSGAKKLI 209
>gi|339496651|ref|ZP_08657627.1| cell division protein [Leuconostoc pseudomesenteroides KCTC 3652]
Length = 277
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 88/191 (46%), Gaps = 4/191 (2%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
VK + + +++ + + + FL P + + AD+ GG AE R +
Sbjct: 20 VKQVDDWIQQSRNEYRSILTRFLNPREQYILNVLVNHAADLAVYFNGGVQGAESQRAILI 79
Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL-QGEKGAQF 198
E D + ++ L I F H LGS++ +GI+R IGDI+ Q Q
Sbjct: 80 PKEYPQDDLEFEISLLEIKYPTKFDDLHHSTILGSMMYSGISRNVIGDILYDQTHSRWQI 139
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPL-LALEYEPPRTKSFKTIEASLRVDALASAGF 257
++ ++ Y+ + K+G+V VS L L + ++F + +SLR+D + SAGF
Sbjct: 140 IIDSKMQHYMQQMVTKIGHVQVSLIECDLNNVLPHINDWEENFLLL-SSLRLDTVISAGF 198
Query: 258 KLSRSKLVNLI 268
LSRS LI
Sbjct: 199 DLSRSGAKKLI 209
>gi|116491157|ref|YP_810701.1| cell division protein [Oenococcus oeni PSU-1]
gi|419857930|ref|ZP_14380631.1| cell division protein [Oenococcus oeni AWRIB202]
gi|419858390|ref|ZP_14381063.1| cell division protein [Oenococcus oeni DSM 20252 = AWRIB129]
gi|421184041|ref|ZP_15641468.1| cell division protein [Oenococcus oeni AWRIB318]
gi|421190579|ref|ZP_15647877.1| cell division protein [Oenococcus oeni AWRIB422]
gi|421191513|ref|ZP_15648787.1| cell division protein [Oenococcus oeni AWRIB548]
gi|116091882|gb|ABJ57036.1| Cell division protein, S4-like domain [Oenococcus oeni PSU-1]
gi|399968275|gb|EJO02727.1| cell division protein [Oenococcus oeni AWRIB318]
gi|399969631|gb|EJO03961.1| cell division protein [Oenococcus oeni AWRIB422]
gi|399971631|gb|EJO05871.1| cell division protein [Oenococcus oeni AWRIB548]
gi|410497082|gb|EKP88560.1| cell division protein [Oenococcus oeni AWRIB202]
gi|410498826|gb|EKP90271.1| cell division protein [Oenococcus oeni DSM 20252 = AWRIB129]
Length = 256
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 96/209 (45%), Gaps = 16/209 (7%)
Query: 64 NFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLT---PPVLKESMMALEKLAD 120
NFD L D I K +L+ +A + FLT P ++ ++ L K
Sbjct: 3 NFDVNLNHYSDAEKIF-AKQVLDWFFQADEK------SFLTVFLNPQEQKILLELAKQIG 55
Query: 121 VKAVAQGGYPQAERCRLSVG-HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTG 179
GGY +AE R +G H E +D I + L + + H LGS+L G
Sbjct: 56 FSVRFGGGYQRAENKRALIGDHKE---NDFQI-SLLQLNYASHYVHLHHSTVLGSLLHHG 111
Query: 180 IAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKS 239
I+ ++IGD+I + + Q L+ LAD+++ ++++ + ++ +IP + K
Sbjct: 112 ISYDRIGDVIHEND-NWQLLIDSSLADFVVENVKRAASKKITFEKIPFEKILNPQSDEKE 170
Query: 240 FKTIEASLRVDALASAGFKLSRSKLVNLI 268
+ + +S R+D L S + SR+ +LI
Sbjct: 171 KEIVISSQRIDLLISQIYNFSRAHAKDLI 199
>gi|325845150|ref|ZP_08168459.1| S4 domain protein [Turicibacter sp. HGF1]
gi|325488815|gb|EGC91215.1| S4 domain protein [Turicibacter sp. HGF1]
Length = 255
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 78/167 (46%), Gaps = 4/167 (2%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD--PDIVAALSI 157
+ FLT + M + + ++V+ +GG+ +AER R ++ +P+ L + V I
Sbjct: 32 TKFLTLREQEIVQMLVNQNSEVRVSFEGGFQKAERKR-AILYPDYLKLNNLSQYVKGYEI 90
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
N H LGS+ I R IGDI++ + E +++ + KVG
Sbjct: 91 EYNQKLVTLKHPQILGSLTALNIDRSLIGDIVILSNGRIYLAICEEFSEFFLQHFHKVGK 150
Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKL 264
S+ + E + + F+ I +S+R+D + ++ K+SRS++
Sbjct: 151 HSILIKESSISQFE-KIDQEDEFEIIISSMRLDVIVASLMKVSRSQV 196
>gi|55820805|ref|YP_139247.1| hypothetical protein stu0739 [Streptococcus thermophilus LMG 18311]
gi|418027555|ref|ZP_12666188.1| RNA binding protein [Streptococcus thermophilus CNCM I-1630]
gi|55736790|gb|AAV60432.1| conserved hypothetical protein [Streptococcus thermophilus LMG
18311]
gi|354691639|gb|EHE91557.1| RNA binding protein [Streptococcus thermophilus CNCM I-1630]
Length = 266
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 7/173 (4%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 157
+DFL P + + + L ++K + E R+ + P+ D D + L I
Sbjct: 38 TDFLNPREI-QIVKDLANYYNLKFFVSSTFDNEEYGRVILA-PDYYELDEDDFEIKRLEI 95
Query: 158 TGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
+ F +H LG++L G+ R+ GD+IL E QF + LA Y I ++ K+G
Sbjct: 96 SYARQFNELTHPKILGALLNQLGLERQVFGDVILDEEGRVQFNIASHLASYAIMTITKIG 155
Query: 217 NVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
VSV+ + + + ++SF + +S+R+D + S K SRS + LI
Sbjct: 156 RVSVTLREVSKDEWISNQEKYSQSF-VLLSSMRLDNVLSTVLKTSRSNALKLI 207
>gi|422940293|ref|ZP_16967632.1| RNA binding protein [Fusobacterium nucleatum subsp. animalis ATCC
51191]
gi|339890036|gb|EGQ79226.1| RNA binding protein [Fusobacterium nucleatum subsp. animalis ATCC
51191]
Length = 241
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 106/214 (49%), Gaps = 23/214 (10%)
Query: 78 IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
+E++++ +++A +A + V++S+ P S + K + +K +G E+ L
Sbjct: 5 LEKIENYIKLAEKADT---VIYSNQFFPV----SQLNNLKYSGMKFSFKGLNEDCEKKLL 57
Query: 138 SVGHPEALTSD----PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGE 193
+V +PE + D P V I F H +LG+ILG GI RE +GD+I++ +
Sbjct: 58 AV-YPEYFSEDYLYFP--VKYFKIIKKSKFINLEHKHYLGNILGLGIKREILGDLIVKND 114
Query: 194 KGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVD 250
+ +++ + D+L +L ++ + V I E E P+ + FK + +SLR+D
Sbjct: 115 ECYG-IILENMFDFLKENLLRINSSPVEIIEIG----ENEVPQNE-FKELNIRLSSLRLD 168
Query: 251 ALASAGFKLSRSKLVNLIRYSSLASLVQISAKAS 284
+L S LSR+ VN I ++ +I + S
Sbjct: 169 SLVSELTNLSRASSVNYIDLGNVQVNYEIQREKS 202
>gi|295425121|ref|ZP_06817826.1| S4 domain protein [Lactobacillus amylolyticus DSM 11664]
gi|295065180|gb|EFG56083.1| S4 domain protein [Lactobacillus amylolyticus DSM 11664]
Length = 276
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 77/177 (43%), Gaps = 13/177 (7%)
Query: 94 RREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHP-EALTSDP 149
+ E L +DFL P +LK + L D GGY +E+ R+ + E +
Sbjct: 44 KHESLLTDFLDPGQREILKIIVGNEAFLQDF-----GGYLNSEKRRVYLSEEWENFRTTD 98
Query: 150 DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLI 209
V A I F +H LG++ +GI + GDII G QF EL Y
Sbjct: 99 FQVQAFEIQYPTKFYKLTHSSILGTLANSGIKTDTFGDIITDGHGKWQFFAKKELQSYFE 158
Query: 210 TSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE--ASLRVDALASAGFKLSRSKL 264
+ ++G V P+ E P S + +E +SLR+DA+ + K SR++L
Sbjct: 159 EQIVRIGKSKVKLQ--PISFKEVLVPEDDSIEKVEIVSSLRLDAILAGISKQSRTQL 213
>gi|116512743|ref|YP_811650.1| cell division protein [Lactococcus lactis subsp. cremoris SK11]
gi|414074890|ref|YP_007000107.1| RNA-binding protein, containing S4 domain [Lactococcus lactis
subsp. cremoris UC509.9]
gi|116108397|gb|ABJ73537.1| Cell division protein, S4-like domain [Lactococcus lactis subsp.
cremoris SK11]
gi|413974810|gb|AFW92274.1| RNA-binding protein, containing S4 domain [Lactococcus lactis
subsp. cremoris UC509.9]
Length = 263
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 4/171 (2%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG-HPEALTSDPDIVAALSIT 158
S F P E + L +V+ + Q E ++ + + L D +A L I+
Sbjct: 36 STFFLNPREVEILKTLANKREVQVFSSAELAQTELVKIILAPNFYVLDKDDFDIALLEIS 95
Query: 159 GNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
F SH LG+ LG G+ R+++GDII+ K Q V L + S++K+G
Sbjct: 96 YAIKFVQISHAQVLGTFLGQAGVKRQELGDIIVTDSK-IQIFVSKHLVESF-KSIDKIGR 153
Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+V I L L + R + LR+D + + FK+SR+ N++
Sbjct: 154 AAVKIDEISLTDLAQDTERAIQEVVLLDGLRIDKMIAIAFKISRNIATNML 204
>gi|417006954|ref|ZP_11945226.1| cell division protein [Lactobacillus helveticus MTCC 5463]
gi|328468653|gb|EGF39647.1| cell division protein [Lactobacillus helveticus MTCC 5463]
Length = 266
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 76/177 (42%), Gaps = 5/177 (2%)
Query: 94 RREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD--I 151
+ E + +DFL P K +++ DV GGY AE+ R+ + E + P +
Sbjct: 34 KHEPILTDFLDPG--KRAILKTIVGNDVFMQEYGGYTNAEKKRVYLSE-EWVNLQPSDYL 90
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
+ I F +H LG++ +GI + GDII QF EL D+
Sbjct: 91 IQPYEIEYPQKFIKINHSAILGTLANSGIETDTFGDIITDENGKWQFFAKKELVDFFEEQ 150
Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+ ++G V I + + I AS+R+DA+ S+ K SR ++ LI
Sbjct: 151 ITRIGRAQVKLKEITFKDVLVPEDDSTEKTEIVASMRIDAVLSSISKQSRGQIQKLI 207
>gi|291538949|emb|CBL12060.1| Uncharacterized conserved protein, contains S4-like domain
[Roseburia intestinalis XB6B4]
Length = 250
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 95/193 (49%), Gaps = 11/193 (5%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
K +L+++R+A + VL SDFL L + A K + GG AER ++
Sbjct: 9 KRLLDLSRQADRKGIVLFSDFLNLNELNIYHQCESEFA-TKTESFGGVSYAER-QIIAFI 66
Query: 142 PEALTSDPDI-VAALSITGNF--GFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
P+AL + +AAL + + + H D LGS++ GI R KIGDI++ G+
Sbjct: 67 PDALYYEWTYPIAALKVEPAYPKYAEKLGHRDLLGSVMTLGIDRSKIGDILM-GDGCYYI 125
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT--IEASLRVDALASAG 256
L +A Y + L KV + V R+ +++ + + I S R+D++ +
Sbjct: 126 LCEENVAPYFMEQLTKVRHTLV---RLSVVSTDEISSHQEMIDKDGIITSNRLDSVIACV 182
Query: 257 FKLSRSKLVNLIR 269
++LSRS+ + LIR
Sbjct: 183 YRLSRSQSLELIR 195
>gi|293376233|ref|ZP_06622476.1| S4 domain protein [Turicibacter sanguinis PC909]
gi|292645125|gb|EFF63192.1| S4 domain protein [Turicibacter sanguinis PC909]
Length = 255
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 78/167 (46%), Gaps = 4/167 (2%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD--PDIVAALSI 157
+ FLT + M + + ++V+ +GG+ +AER R ++ +P+ L + V I
Sbjct: 32 TKFLTLREQEIVQMLVNQNSEVRVSFEGGFQKAERKR-AILYPDYLKLNNLSQYVKGYEI 90
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
N H LGS+ I R IGDI++ + E +++ + KVG
Sbjct: 91 EYNQKLVTLKHPQILGSLTALNIDRSLIGDIVVLSNGRIYLAICEEFSEFFLQHFHKVGK 150
Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKL 264
S+ + E + + F+ I +S+R+D + ++ K+SRS++
Sbjct: 151 HSILIKESSISQFE-KIDQEDEFEIIISSMRLDVIVASLMKVSRSQV 196
>gi|289765067|ref|ZP_06524445.1| RNA binding protein [Fusobacterium sp. D11]
gi|336401695|ref|ZP_08582457.1| hypothetical protein HMPREF0404_01748 [Fusobacterium sp. 21_1A]
gi|336419702|ref|ZP_08599957.1| RNA binding protein [Fusobacterium sp. 11_3_2]
gi|423137340|ref|ZP_17124983.1| hypothetical protein HMPREF9942_01121 [Fusobacterium nucleatum
subsp. animalis F0419]
gi|289716622|gb|EFD80634.1| RNA binding protein [Fusobacterium sp. D11]
gi|336160796|gb|EGN63828.1| hypothetical protein HMPREF0404_01748 [Fusobacterium sp. 21_1A]
gi|336163022|gb|EGN65964.1| RNA binding protein [Fusobacterium sp. 11_3_2]
gi|371960273|gb|EHO77933.1| hypothetical protein HMPREF9942_01121 [Fusobacterium nucleatum
subsp. animalis F0419]
Length = 241
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 100/198 (50%), Gaps = 23/198 (11%)
Query: 78 IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
+E++++ +++A +A + V++S+ P S + K + +K +G E+ L
Sbjct: 5 LEKIENYIKLAEKADT---VIYSNQFFPV----SQLNNLKYSGMKFSFKGLNEDCEKKLL 57
Query: 138 SVGHPEALTSD----PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGE 193
+V +PE + D P V I F H +LG+ILG GI RE +GD+I++ +
Sbjct: 58 AV-YPEYFSEDYLYFP--VKYFKIIKKSKFINLEHKHYLGNILGLGIKREILGDLIVKND 114
Query: 194 KGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVD 250
+ +++ + D+L +L ++ + V I E E P+ + FK + +SLR+D
Sbjct: 115 E-CYGIILENMFDFLKENLLRINSSPVEIIEIG----ENEVPQNE-FKELNIRLSSLRLD 168
Query: 251 ALASAGFKLSRSKLVNLI 268
+L S LSR+ VN I
Sbjct: 169 SLVSELTNLSRASSVNYI 186
>gi|240146312|ref|ZP_04744913.1| putative S4 domain protein [Roseburia intestinalis L1-82]
gi|257201553|gb|EEU99837.1| putative S4 domain protein [Roseburia intestinalis L1-82]
Length = 250
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 96/193 (49%), Gaps = 11/193 (5%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
K +L+++R+A + VL SDFL L + A K + GG AER ++
Sbjct: 9 KRLLDLSRQADRKGIVLFSDFLNLNELNIYHQCESEFA-TKTESFGGVSYAER-QIIAFI 66
Query: 142 PEALTSDPDI-VAALSITGNF-GF-QPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
P+AL + +AAL + + F + H D LGS++ GI R KIGDI++ G+
Sbjct: 67 PDALYYEWTYPIAALKVEPAYPKFAEKLGHRDLLGSVMTLGIDRSKIGDILM-GDGCYYI 125
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT--IEASLRVDALASAG 256
L +A Y + L KV + V R+ +++ + + I S R+D++ +
Sbjct: 126 LCEENVAPYFMEQLTKVRHTLV---RLSVVSTDEISSHQEMIDKDGIITSNRLDSVIACV 182
Query: 257 FKLSRSKLVNLIR 269
++LSRS+ + LIR
Sbjct: 183 YRLSRSQSLELIR 195
>gi|403069265|ref|ZP_10910597.1| hypothetical protein ONdio_06690 [Oceanobacillus sp. Ndiop]
Length = 258
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 3/165 (1%)
Query: 100 SDFLTPPVLK-ESMMALEKLADVKAVAQGGYPQAERCRLSVG-HPEALTSDPDIVAALSI 157
+DFL P + M+ ++K GG AER R+ + E +T D + L
Sbjct: 34 TDFLDPREQQIVEMLIGTSQEELKIYKHGGGHGAERKRMVIAPFYEVVTQDSCQLTLLEA 93
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
+ F H D +G+ + G+ R+K+GDI G+ Q ++ E+A Y+I +L +
Sbjct: 94 SYQDKFITIEHRDVMGAFMSLGVHRKKLGDI-FAGDGTIQIILAEEIAAYVIANLTSIKK 152
Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRS 262
+V L +++ + + +SLR+DA+ +KLSR
Sbjct: 153 ANVIFEERDLSSMQIKKEQWIETDKTVSSLRLDAVLKEIYKLSRK 197
>gi|450000066|ref|ZP_21824911.1| hypothetical protein SMU56_03254 [Streptococcus mutans N29]
gi|450078231|ref|ZP_21850915.1| hypothetical protein SMU75_07403 [Streptococcus mutans N3209]
gi|449186310|gb|EMB88149.1| hypothetical protein SMU56_03254 [Streptococcus mutans N29]
gi|449210280|gb|EMC10750.1| hypothetical protein SMU75_07403 [Streptococcus mutans N3209]
Length = 262
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 12/175 (6%)
Query: 100 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 154
++FL P V+K S++ KL + + +E RL + + E +D I +
Sbjct: 37 TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91
Query: 155 LSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
L I N F +H LG+++ GI R +GDII+Q E AQ + + YL +
Sbjct: 92 LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNVQVT 150
Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+G +V IP + + +S+R+D + +A KLSR K LI
Sbjct: 151 KIGKAAVVFEEIPFERQITSQSHIREMNVLVSSMRLDKIIAAVLKLSRRKANQLI 205
>gi|445375291|ref|ZP_21426482.1| hypothetical protein IQ5_03686 [Streptococcus thermophilus MTCC
5460]
gi|444750373|gb|ELW75191.1| hypothetical protein IQ5_03686 [Streptococcus thermophilus MTCC
5460]
Length = 266
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 7/173 (4%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 157
+DFL P + + + L ++K + E R+ + P+ D D + L I
Sbjct: 38 TDFLNPREI-QIVKDLANYYNLKFFVSSTFDNEEYGRVILA-PDYYELDEDDFEIKRLEI 95
Query: 158 TGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
+ F +H LG++L G+ R+ GD+IL E QF + LA Y I ++ K+G
Sbjct: 96 SYARQFNELTHPKILGALLNQLGLERQVFGDVILDEEGRVQFNIASHLASYAIMTITKIG 155
Query: 217 NVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
VSV+ + + + ++SF + +S+R+D + S K SRS + LI
Sbjct: 156 RVSVTLREVSKDDWISNQEKYSQSF-VLLSSMRLDNVLSTVLKTSRSNALKLI 207
>gi|387909514|ref|YP_006339820.1| cell division protein [Streptococcus thermophilus MN-ZLW-002]
gi|387574449|gb|AFJ83155.1| cell division protein [Streptococcus thermophilus MN-ZLW-002]
Length = 266
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 7/173 (4%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 157
+DFL P + + + L ++K + E R+ + P+ D D + L I
Sbjct: 38 TDFLNPREI-QIVKDLANYYNLKFFVSSTFDNEEYGRVILA-PDYYELDEDDFEIKRLEI 95
Query: 158 TGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
+ F +H LG++L G+ R+ GD+IL E QF + LA Y I ++ K+G
Sbjct: 96 SYARQFNKLTHPKILGALLNQLGLERQVFGDVILDEEGRVQFNIASHLASYAIMTITKIG 155
Query: 217 NVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
VSV+ + + + ++SF + +S+R+D + S K SRS + LI
Sbjct: 156 RVSVTLREVSKDDWISNQEKYSQSF-VLLSSMRLDNVLSTVLKTSRSNALKLI 207
>gi|385837519|ref|YP_005875149.1| hypothetical protein [Lactococcus lactis subsp. cremoris A76]
gi|358748747|gb|AEU39726.1| hypothetical protein llh_2750 [Lactococcus lactis subsp. cremoris
A76]
Length = 263
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 4/171 (2%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG-HPEALTSDPDIVAALSIT 158
S F P E + L +V+ + Q E ++ + + L D +A L I+
Sbjct: 36 STFFLNPREVEILKTLANKREVQVFSSAELAQTELVKIILAPNFYVLDKDDFDIALLEIS 95
Query: 159 GNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
F SH LG+ LG G+ R+++GDII+ K Q V L + S++K+G
Sbjct: 96 YAIKFVQISHAQVLGTFLGQAGVKRQELGDIIVTDSK-IQIFVSKHLVESF-KSIDKIGR 153
Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+V I L L + R + LR+D + + FK+SR+ N++
Sbjct: 154 AAVKIDEISLTDLAQDTERAIQEVVLLDGLRIDKMIAIAFKISRNIATNML 204
>gi|229918558|ref|YP_002887204.1| RNA-binding S4 domain-containing protein [Exiguobacterium sp. AT1b]
gi|229469987|gb|ACQ71759.1| RNA-binding S4 domain protein [Exiguobacterium sp. AT1b]
Length = 256
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 99/215 (46%), Gaps = 19/215 (8%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLS 138
V+ +L+ ++ + + +DFL P +++L + V GG+ AER RL
Sbjct: 15 VEQVLDWVQQVENSYVLKLTDFLDP----REQQIVKQLVGKQLVIHDDGGFEGAERRRLI 70
Query: 139 VGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
+ P+ +PD + I F +H G++L G+ R+K GD++L E+
Sbjct: 71 LA-PDYYELNPDDFEIEVRRIEYPTKFVDLTHRQVTGTLLNAGLKRQKFGDVVLD-EEIV 128
Query: 197 QFLVVPELADYLITSLEKVGNVSV---SCTRIPLLALEYEPPRTKSFK--TIEASLRVDA 251
QF E ++ +LE+VG V S + +L + P+T+ + I +SLR D
Sbjct: 129 QFATTREAVGFIEMNLERVGKAKVRISSVAKEEILVV----PKTEWVEGFGIVSSLRFDT 184
Query: 252 LASAGFKLSRSKLVNLIRYSSLASLVQISAKASAI 286
+AS +SR K L+++ ++ AS I
Sbjct: 185 VASEVLNISRQKAQALVKHGDCKVNHKVIEDASFI 219
>gi|163790530|ref|ZP_02184959.1| S4 domain protein [Carnobacterium sp. AT7]
gi|159874133|gb|EDP68208.1| S4 domain protein [Carnobacterium sp. AT7]
Length = 260
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 77/177 (43%), Gaps = 16/177 (9%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
++FL P L + K +D+ + GGY AER R + D V I
Sbjct: 36 TNFLDPRQLHIVKTIVGKNSDITIHSFGGYEAAERVRAFICPAYFTPKQEDFEVTICEIR 95
Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 218
F SHG LG++L TG+ R+ GDII G + Q V Y+ + +G V
Sbjct: 96 YPTKFASLSHGKVLGTLLSTGLKRDYFGDIISDGSR-WQVFVENSTKSYIEQQVVSIGKV 154
Query: 219 SVSCTR-------IPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+V IP+ E +T+ +S+R+D L S+ FK+SR + +I
Sbjct: 155 AVRMEERAYTDILIPIDNWSIEN------QTV-SSMRLDTLVSSVFKISRQRAKQMI 204
>gi|449887873|ref|ZP_21787103.1| hypothetical protein SMU104_07220 [Streptococcus mutans SA41]
gi|449893788|ref|ZP_21788934.1| hypothetical protein SMU105_06710 [Streptococcus mutans SF12]
gi|449916113|ref|ZP_21796665.1| hypothetical protein SMU20_06491 [Streptococcus mutans 15JP3]
gi|449991914|ref|ZP_21822090.1| hypothetical protein SMU53_08196 [Streptococcus mutans NVAB]
gi|450041211|ref|ZP_21837265.1| hypothetical protein SMU63_07095 [Streptococcus mutans T4]
gi|450117360|ref|ZP_21864966.1| hypothetical protein SMU83_08453 [Streptococcus mutans ST1]
gi|449155604|gb|EMB59109.1| hypothetical protein SMU20_06491 [Streptococcus mutans 15JP3]
gi|449180385|gb|EMB82543.1| hypothetical protein SMU53_08196 [Streptococcus mutans NVAB]
gi|449197940|gb|EMB99076.1| hypothetical protein SMU63_07095 [Streptococcus mutans T4]
gi|449226359|gb|EMC25901.1| hypothetical protein SMU83_08453 [Streptococcus mutans ST1]
gi|449252005|gb|EMC49998.1| hypothetical protein SMU104_07220 [Streptococcus mutans SA41]
gi|449255693|gb|EMC53538.1| hypothetical protein SMU105_06710 [Streptococcus mutans SF12]
Length = 262
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 12/175 (6%)
Query: 100 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 154
++FL P V+K S++ KL + + +E RL + + E +D I +
Sbjct: 37 TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91
Query: 155 LSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
L I N F +H LG+++ GI R +GDII+Q E AQ + + YL +
Sbjct: 92 LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150
Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+G +V IP + + +S+R+D + +A KLSR K LI
Sbjct: 151 KIGKAAVVFEEIPFERQITSQSHIREMNVLVSSMRLDKIIAAVLKLSRRKANQLI 205
>gi|387783869|ref|YP_006069952.1| cell division protein, contains S4-like domain [Streptococcus
salivarius JIM8777]
gi|338744751|emb|CCB95117.1| cell division protein, contains S4-like domain [Streptococcus
salivarius JIM8777]
Length = 267
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 11/175 (6%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVA--QGGYPQAERCRLSVGHPEALT-SDPDI-VAAL 155
+DFL P + +E+LA + P++E + PE D D + L
Sbjct: 38 TDFLNP----REIQIVEELAHYYNLKFFVSSTPESEEYGRVILAPEYYELDDEDFEIKRL 93
Query: 156 SITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 214
I+ F +H LG+++ G+ R+ GDIIL E QF + LA Y I ++ K
Sbjct: 94 EISYARQFNKLTHPKVLGALINQLGLDRQVFGDIILDEEGRVQFSIASHLASYAIMTITK 153
Query: 215 VGNVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+GNVSV+ + + + ++SF + +S+R+D + + LSRS + LI
Sbjct: 154 IGNVSVTLKEVSKDDWISNQENYSQSF-VLLSSMRLDNVLATVLNLSRSNALKLI 207
>gi|116627609|ref|YP_820228.1| cell division protein [Streptococcus thermophilus LMD-9]
gi|386086417|ref|YP_006002291.1| Cell division protein, contains S4-like domain [Streptococcus
thermophilus ND03]
gi|116100886|gb|ABJ66032.1| Cell division protein, contains S4-like domain [Streptococcus
thermophilus LMD-9]
gi|312278130|gb|ADQ62787.1| Cell division protein, contains S4-like domain [Streptococcus
thermophilus ND03]
Length = 266
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 7/173 (4%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 157
+DFL P + + + L ++K + E R+ + P+ D D + L I
Sbjct: 38 TDFLNPREI-QIVKDLANYYNLKFFVSSTFDNEEYGRVILA-PDYYELDEDDFEIKRLEI 95
Query: 158 TGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
+ F +H LG++L G+ R+ GD+IL E QF + LA Y I ++ K+G
Sbjct: 96 SYARQFNKLTHPKILGALLNQLGLERQVFGDVILDEEGRVQFNIASHLASYAIMTITKIG 155
Query: 217 NVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
VSV+ + + + ++SF + +S+R+D + S K SRS + LI
Sbjct: 156 RVSVTLREVSKDDWISNQEKYSQSF-VLLSSMRLDNVLSTVLKTSRSNALKLI 207
>gi|381336957|ref|YP_005174732.1| cell division protein [Leuconostoc mesenteroides subsp.
mesenteroides J18]
gi|356644923|gb|AET30766.1| cell division protein [Leuconostoc mesenteroides subsp.
mesenteroides J18]
Length = 265
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 88/191 (46%), Gaps = 4/191 (2%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
VK + + +++ + + + FL P + + AD+ GG AE R +
Sbjct: 20 VKQVDDWIQQSRNEYRSILTRFLNPREQYILNVLVNHAADLAVYFNGGVQGAESQRAILI 79
Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL-QGEKGAQF 198
E D + ++ + I F H LGS++ +GI+R IGDI+ Q Q
Sbjct: 80 PKEYPQDDLEFEISLIEIKYPTKFDDLHHSTILGSMMYSGISRNVIGDILYDQTHSRWQI 139
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPL-LALEYEPPRTKSFKTIEASLRVDALASAGF 257
++ ++ Y+ + K+G+V VS L L + ++F + +SLR+D + SAGF
Sbjct: 140 IIDSKMQHYMQQMVTKIGHVQVSLIECDLNNVLPHINDWEENFLLL-SSLRLDTVISAGF 198
Query: 258 KLSRSKLVNLI 268
LSRS LI
Sbjct: 199 DLSRSGAKKLI 209
>gi|449898457|ref|ZP_21790629.1| hypothetical protein SMU107_05560 [Streptococcus mutans R221]
gi|449904579|ref|ZP_21792735.1| hypothetical protein SMU108_06161 [Streptococcus mutans M230]
gi|449928895|ref|ZP_21801402.1| hypothetical protein SMU26_01277 [Streptococcus mutans 3SN1]
gi|449935360|ref|ZP_21803321.1| hypothetical protein SMU29_00680 [Streptococcus mutans 2ST1]
gi|449975429|ref|ZP_21815779.1| hypothetical protein SMU44_05296 [Streptococcus mutans 11VS1]
gi|450011801|ref|ZP_21829338.1| hypothetical protein SMU58_06488 [Streptococcus mutans A19]
gi|450024075|ref|ZP_21831001.1| hypothetical protein SMU60_05017 [Streptococcus mutans U138]
gi|450125353|ref|ZP_21867610.1| hypothetical protein SMU86_02118 [Streptococcus mutans U2A]
gi|450152968|ref|ZP_21876931.1| hypothetical protein SMU93_00028 [Streptococcus mutans 21]
gi|449164967|gb|EMB68001.1| hypothetical protein SMU26_01277 [Streptococcus mutans 3SN1]
gi|449166646|gb|EMB69573.1| hypothetical protein SMU29_00680 [Streptococcus mutans 2ST1]
gi|449176938|gb|EMB79262.1| hypothetical protein SMU44_05296 [Streptococcus mutans 11VS1]
gi|449189103|gb|EMB90781.1| hypothetical protein SMU58_06488 [Streptococcus mutans A19]
gi|449192405|gb|EMB93827.1| hypothetical protein SMU60_05017 [Streptococcus mutans U138]
gi|449232536|gb|EMC31644.1| hypothetical protein SMU86_02118 [Streptococcus mutans U2A]
gi|449239439|gb|EMC38161.1| hypothetical protein SMU93_00028 [Streptococcus mutans 21]
gi|449259108|gb|EMC56652.1| hypothetical protein SMU108_06161 [Streptococcus mutans M230]
gi|449259791|gb|EMC57310.1| hypothetical protein SMU107_05560 [Streptococcus mutans R221]
Length = 262
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 12/175 (6%)
Query: 100 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 154
++FL P V+K S++ KL + + +E RL + + E +D I +
Sbjct: 37 TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91
Query: 155 LSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
L I N F +H LG+++ GI R +GDII+Q E AQ + + YL +
Sbjct: 92 LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150
Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+G +V IP + + +S+R+D + +A KLSR K LI
Sbjct: 151 KIGKAAVVFEEIPFERQITSQSHIREMNVLVSSMRLDKIIAAVLKLSRRKANQLI 205
>gi|449941901|ref|ZP_21805728.1| hypothetical protein SMU3_03044 [Streptococcus mutans 11A1]
gi|449969794|ref|ZP_21813436.1| hypothetical protein SMU41_03212 [Streptococcus mutans 2VS1]
gi|450056574|ref|ZP_21842123.1| hypothetical protein SMU69_02022 [Streptococcus mutans NLML4]
gi|449151458|gb|EMB55192.1| hypothetical protein SMU3_03044 [Streptococcus mutans 11A1]
gi|449173906|gb|EMB76438.1| hypothetical protein SMU41_03212 [Streptococcus mutans 2VS1]
gi|449206697|gb|EMC07393.1| hypothetical protein SMU69_02022 [Streptococcus mutans NLML4]
Length = 263
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 12/175 (6%)
Query: 100 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 154
++FL P V+K S++ KL + + +E RL + + E +D I +
Sbjct: 38 TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 92
Query: 155 LSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
L I N F +H LG+++ GI R +GDII+Q E AQ + + YL +
Sbjct: 93 LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 151
Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+G +V IP + + +S+R+D + +A KLSR K LI
Sbjct: 152 KIGEAAVVFEEIPFERQITSQSHIREMNVLVSSMRLDKIIAAVLKLSRRKANQLI 206
>gi|379795557|ref|YP_005325555.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus MSHR1132]
gi|356872547|emb|CCE58886.1| ribosomal protein S4, putative [Staphylococcus aureus subsp. aureus
MSHR1132]
Length = 259
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 74/151 (49%), Gaps = 6/151 (3%)
Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
D+K GG P AER R +S + E SD ++ + + I F H LG+++
Sbjct: 57 DLKVSFNGG-PFAERKRAIISPSYFEPKESDFEL-SLIEINYPEKFVTLKHQHILGTLMS 114
Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
GI RE++GDII+ GE G QF++ L +++ L+++ SV IPL +
Sbjct: 115 LGIEREQVGDIIV-GE-GIQFVLTSRLESFIMLELQRIKGASVKLNTIPLTDMIQSNENW 172
Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K +SLR+D + + SR+ LI
Sbjct: 173 KIESATVSSLRLDVVIKEMIRKSRTIAKQLI 203
>gi|237743523|ref|ZP_04574004.1| RNA binding protein [Fusobacterium sp. 7_1]
gi|229433302|gb|EEO43514.1| RNA binding protein [Fusobacterium sp. 7_1]
Length = 241
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 99/197 (50%), Gaps = 21/197 (10%)
Query: 78 IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
+E++++ +++A +A + V++S+ P S + K + +K +G E+ L
Sbjct: 5 LEKIENYIKLAEKADT---VIYSNQFFPV----SQLNNLKYSGMKFYFKGLNEDCEKKLL 57
Query: 138 SVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
+V +PE + D V I F H +LG+ILG GI RE +GD+I++ G
Sbjct: 58 AV-YPEYFSEDYLYFPVKYFKIIKKSKFINLEHKHYLGNILGLGIKREILGDLIVKN--G 114
Query: 196 AQF-LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVDA 251
+ +++ + D+L +L ++ + V I E E P+ + FK + +SLR+D+
Sbjct: 115 ECYGIILENMFDFLKENLLRINSSPVEIIEIG----ENEVPQNE-FKELNIRLSSLRLDS 169
Query: 252 LASAGFKLSRSKLVNLI 268
L S LSR+ VN I
Sbjct: 170 LVSELTNLSRASSVNYI 186
>gi|450100013|ref|ZP_21858585.1| hypothetical protein SMU80_06218 [Streptococcus mutans SF1]
gi|450169794|ref|ZP_21883172.1| hypothetical protein SMU97_02282 [Streptococcus mutans SM4]
gi|449220573|gb|EMC20426.1| hypothetical protein SMU80_06218 [Streptococcus mutans SF1]
gi|449246651|gb|EMC44949.1| hypothetical protein SMU97_02282 [Streptococcus mutans SM4]
Length = 262
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 12/175 (6%)
Query: 100 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 154
++FL P V+K S++ KL + + +E RL + + E +D I +
Sbjct: 37 TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91
Query: 155 LSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
L I N F +H LG+++ GI R +GDII+Q E AQ + + YL +
Sbjct: 92 LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150
Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+G +V IP + + +S+R+D + +A KLSR K LI
Sbjct: 151 KIGKAAVVFEEIPFERQITSQSHIREMNVLVSSMRLDKIIAAVLKLSRRKANQLI 205
>gi|259503039|ref|ZP_05745941.1| S4 domain-containing protein YlmH [Lactobacillus antri DSM 16041]
gi|259168905|gb|EEW53400.1| S4 domain-containing protein YlmH [Lactobacillus antri DSM 16041]
Length = 260
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 89/196 (45%), Gaps = 6/196 (3%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSV- 139
+ + + ASS+ + + FL P + +VK + GG+ AE R+
Sbjct: 17 IDQVADWISTASSQYRPVLTVFLNPRQRYIARTMANAADEVKMASAGGWSGAEMQRVLFY 76
Query: 140 -GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG-AQ 197
+ + +D ++ L + F H +G+++G G+ R GDI+ G++G Q
Sbjct: 77 PAYYQPTAADFEL-RVLEVNYPTKFTELHHRQIMGTLIGEGLERSAFGDIL--GDQGRWQ 133
Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
+V +A YL ++ +G + + + + ++ T +SLR+DA+ +AGF
Sbjct: 134 VVVTTAMAKYLQANVNHIGRAKIKWRPVETADVLHPVEDWEALTTTVSSLRLDAVVAAGF 193
Query: 258 KLSRSKLVNLIRYSSL 273
SR++ L+ + +
Sbjct: 194 NYSRNRAKQLVEHGQV 209
>gi|290580942|ref|YP_003485334.1| hypothetical protein SmuNN2025_1416 [Streptococcus mutans NN2025]
gi|449875971|ref|ZP_21782531.1| hypothetical protein SMU102_03663 [Streptococcus mutans S1B]
gi|449883564|ref|ZP_21785234.1| hypothetical protein SMU103_07295 [Streptococcus mutans SA38]
gi|449925345|ref|ZP_21800206.1| hypothetical protein SMU22_04895 [Streptococcus mutans 4SM1]
gi|449947988|ref|ZP_21807749.1| hypothetical protein SMU33_03663 [Streptococcus mutans 11SSST2]
gi|450028374|ref|ZP_21832112.1| hypothetical protein SMU61_00635 [Streptococcus mutans G123]
gi|450033877|ref|ZP_21834028.1| hypothetical protein SMU62_00445 [Streptococcus mutans M21]
gi|450068048|ref|ZP_21846972.1| hypothetical protein SMU72_07237 [Streptococcus mutans NLML9]
gi|450092756|ref|ZP_21856228.1| hypothetical protein SMU78_04303 [Streptococcus mutans W6]
gi|450109968|ref|ZP_21861828.1| hypothetical protein SMU82_02336 [Streptococcus mutans SM6]
gi|450120006|ref|ZP_21865434.1| hypothetical protein SMU85_00854 [Streptococcus mutans ST6]
gi|450149389|ref|ZP_21876096.1| hypothetical protein SMU92_05620 [Streptococcus mutans 14D]
gi|450165915|ref|ZP_21882085.1| hypothetical protein SMU95_06504 [Streptococcus mutans B]
gi|254997841|dbj|BAH88442.1| hypothetical protein [Streptococcus mutans NN2025]
gi|449161609|gb|EMB64790.1| hypothetical protein SMU22_04895 [Streptococcus mutans 4SM1]
gi|449167996|gb|EMB70840.1| hypothetical protein SMU33_03663 [Streptococcus mutans 11SSST2]
gi|449195787|gb|EMB97096.1| hypothetical protein SMU61_00635 [Streptococcus mutans G123]
gi|449196952|gb|EMB98183.1| hypothetical protein SMU62_00445 [Streptococcus mutans M21]
gi|449207736|gb|EMC08404.1| hypothetical protein SMU72_07237 [Streptococcus mutans NLML9]
gi|449218004|gb|EMC18030.1| hypothetical protein SMU78_04303 [Streptococcus mutans W6]
gi|449225723|gb|EMC25309.1| hypothetical protein SMU82_02336 [Streptococcus mutans SM6]
gi|449230795|gb|EMC30043.1| hypothetical protein SMU85_00854 [Streptococcus mutans ST6]
gi|449234497|gb|EMC33502.1| hypothetical protein SMU92_05620 [Streptococcus mutans 14D]
gi|449240265|gb|EMC38952.1| hypothetical protein SMU95_06504 [Streptococcus mutans B]
gi|449249644|gb|EMC47751.1| hypothetical protein SMU103_07295 [Streptococcus mutans SA38]
gi|449253359|gb|EMC51317.1| hypothetical protein SMU102_03663 [Streptococcus mutans S1B]
Length = 262
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 12/175 (6%)
Query: 100 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 154
++FL P V+K S++ KL + + +E RL + + E +D I +
Sbjct: 37 TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91
Query: 155 LSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
L I N F +H LG+++ GI R +GDII+Q E AQ + + YL +
Sbjct: 92 LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150
Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+G +V IP + + +S+R+D + +A KLSR K LI
Sbjct: 151 KIGEAAVVFEEIPFERQITSQSHIREMNVLVSSMRLDKIIAAVLKLSRRKANQLI 205
>gi|228476829|ref|ZP_04061474.1| RNA binding protein [Streptococcus salivarius SK126]
gi|228251403|gb|EEK10548.1| RNA binding protein [Streptococcus salivarius SK126]
Length = 267
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 11/175 (6%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVA--QGGYPQAERCRLSVGHPEALT-SDPDI-VAAL 155
+DFL P + +E+LA + P++E + PE D D + L
Sbjct: 38 TDFLNP----REIQIVEELAHYYNLKFFVSSTPESEEYGRVILAPEYYELDDEDFEIKRL 93
Query: 156 SITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 214
I+ F +H LG+++ G+ R+ GDIIL E QF + LA Y I ++ K
Sbjct: 94 EISYARQFNKLTHPKVLGALINQLGLDRQVFGDIILDEEGRVQFSIASHLASYAIMTITK 153
Query: 215 VGNVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+GNVSV+ + + + ++SF + +S+R+D + + LSRS + LI
Sbjct: 154 IGNVSVTLKEVSKDDWISNQENYSQSF-VLLSSMRLDNVLATVLNLSRSNALKLI 207
>gi|389855204|ref|YP_006357448.1| cell division protein [Lactococcus lactis subsp. cremoris NZ9000]
gi|300071626|gb|ADJ61026.1| cell division protein [Lactococcus lactis subsp. cremoris NZ9000]
Length = 263
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 4/171 (2%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG-HPEALTSDPDIVAALSIT 158
S F P E + L +V+ + Q E ++ + + L D +A L I+
Sbjct: 36 STFFLNPREVEILKTLANKREVQVFSSAELAQTELVKIILAPNFYVLDKDDFDIALLEIS 95
Query: 159 GNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
F SH LG+ LG G+ R+++GDII+ K Q V L + S++K+G
Sbjct: 96 YAIKFVQISHAQVLGTFLGQAGVKRQELGDIIVTDRK-IQIFVSKHLVESF-KSIDKIGR 153
Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+V I L L R + LR+D + + FK+SR+ N++
Sbjct: 154 AAVKIDEISLTDLAQNTERAIQEVVLLDGLRIDKMIAIAFKISRNIATNML 204
>gi|260496850|ref|ZP_05815970.1| RNA binding protein [Fusobacterium sp. 3_1_33]
gi|260196592|gb|EEW94119.1| RNA binding protein [Fusobacterium sp. 3_1_33]
Length = 241
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 100/198 (50%), Gaps = 23/198 (11%)
Query: 78 IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
+E++++ +++A +A + V++S+ P S + K + +K +G E+ L
Sbjct: 5 LEKIENYIKLAEKADT---VIYSNQFFPV----SQLNNLKYSGMKFSFKGLNEDCEKKLL 57
Query: 138 SVGHPEALTSD----PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGE 193
+V +PE + D P V I F H +LG+ILG GI RE +GD+I++ +
Sbjct: 58 AV-YPEYFSEDYLYFP--VKYFKIIKKSRFINLEHKHYLGNILGLGIKREILGDLIVKND 114
Query: 194 KGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVD 250
+ +++ + D+L +L ++ + V I E E P+ + FK + +SLR+D
Sbjct: 115 E-CYGIILENMFDFLKENLLRINSSPVEIIEIG----ENEVPQNE-FKELNIRLSSLRLD 168
Query: 251 ALASAGFKLSRSKLVNLI 268
+L S LSR+ VN I
Sbjct: 169 SLVSELTNLSRASSVNYI 186
>gi|406837717|ref|ZP_11097311.1| cell division protein [Lactobacillus vini DSM 20605]
Length = 260
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 14/156 (8%)
Query: 120 DVKAVAQGGYPQAERCRLSVGHPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILG 177
VK A G + QAER R + +PE + +A + I F H LG++LG
Sbjct: 54 QVKFCANGLFQQAER-RRGLFYPEYFNPKQEDFQLALMEIKYPVKFAQLEHRQILGTLLG 112
Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLAL-----EY 232
+G+ R IGDI+ G Q ++ + ++L +E++G + V I L E+
Sbjct: 113 SGLKRSAIGDILTDGIHW-QVIIEKPMVEFLKQEIERIGKIKVQLEEISFSQLLQSKIEW 171
Query: 233 EPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
E SF +SLR+D L ++ SR++ L+
Sbjct: 172 EKA---SFSV--SSLRIDNLVASVCHFSRARCKQLL 202
>gi|359412534|ref|ZP_09204999.1| RNA-binding S4 domain protein [Clostridium sp. DL-VIII]
gi|357171418|gb|EHI99592.1| RNA-binding S4 domain protein [Clostridium sp. DL-VIII]
Length = 254
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 91/194 (46%), Gaps = 11/194 (5%)
Query: 97 VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS 156
V F TP V K L D K + G + AER +S + P + +
Sbjct: 34 VFGRSFYTPNVWKWFENNLST-RDFKVESDGLFEDAERRMVSFNNT---YESPFPMKLIK 89
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE-LADYLITSLEKV 215
I F +H DFLG IL GI R KIGD+++ +K A ++ V E + ++++ ++ ++
Sbjct: 90 IQNTSKFTSLTHRDFLGGILSLGIERSKIGDLLV--DKDACYIPVHEDIEEFILYNINRI 147
Query: 216 GNVSVSCTRIPLLALEYEPPRTKSFKTI-EASLRVDALASAGFKLSRSKLVNLIRYSS-L 273
V C + +LE P + + I +SLR+D + S +LSR+K +I L
Sbjct: 148 S--KVVCKAEVIDSLELIPKHSFEEEIILVSSLRIDGVVSKITRLSRAKAQAMIEQGQVL 205
Query: 274 ASLVQISAKASAIR 287
++I K+ ++
Sbjct: 206 IDYIKIKDKSYELK 219
>gi|445389778|ref|ZP_21428199.1| hypothetical protein IQ7_03749 [Streptococcus thermophilus MTCC
5461]
gi|444750266|gb|ELW75093.1| hypothetical protein IQ7_03749 [Streptococcus thermophilus MTCC
5461]
Length = 230
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 7/173 (4%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 157
+DFL P + + + L ++K + E R+ + P+ D D + L I
Sbjct: 2 TDFLNPREI-QIVKDLANYYNLKFFVSSTFDNEEYGRVILA-PDYYELDEDDFEIKRLEI 59
Query: 158 TGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
+ F +H LG++L G+ R+ GD+IL E QF + LA Y I ++ K+G
Sbjct: 60 SYARQFNELTHPKILGALLNQLGLERQVFGDVILDEEGRVQFNIASHLASYAIMTITKIG 119
Query: 217 NVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
VSV+ + + + ++SF + +S+R+D + S K SRS + LI
Sbjct: 120 RVSVTLREVSKDDWISNQEKYSQSF-VLLSSMRLDNVLSTVLKTSRSNALKLI 171
>gi|450175242|ref|ZP_21885033.1| hypothetical protein SMU98_01733 [Streptococcus mutans SM1]
gi|449247104|gb|EMC45392.1| hypothetical protein SMU98_01733 [Streptococcus mutans SM1]
Length = 262
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 12/175 (6%)
Query: 100 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 154
++FL P V+K S++ KL + + +E RL + + E +D I +
Sbjct: 37 TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91
Query: 155 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
L I N F +H LG+++ GI R +GDII+Q E AQ + + YL +
Sbjct: 92 LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150
Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+G +V IP K + +S+R+D + +A KLSR + LI
Sbjct: 151 KIGKAAVVFEEIPFERQITSQSHIKEMNVLVSSMRLDKIIAAVLKLSRRQANQLI 205
>gi|392426957|ref|YP_006467951.1| hypothetical protein Desaci_3738 [Desulfosporosinus acidiphilus
SJ4]
gi|391356920|gb|AFM42619.1| hypothetical protein Desaci_3738 [Desulfosporosinus acidiphilus
SJ4]
Length = 265
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 94/212 (44%), Gaps = 22/212 (10%)
Query: 68 LLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLK--ESMMALEKLADVKAVA 125
+LK +K A H+L+ R + + FL+ + + E ++ E+LA +
Sbjct: 9 MLKFWSEKEAYLSAAHLLDQMDAVLHRNSMQVTTFLSFAMREWAEGILNKEQLA---YLL 65
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQP---CSHGDFLGSILGTGIAR 182
+GG+P AER R+ +G E D A LSI P H LGS++G GI R
Sbjct: 66 EGGFPDAERVRIVIGSREETLDSAD--ANLSILEVLPANPHTQLEHRQILGSLIGLGIGR 123
Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT----- 237
E +GD I G G E+A +L+ + G + ++L +E P
Sbjct: 124 EVLGD-IRAGLSGYYLAASTEIAPFLLDQWKAAGREKIK------VSLCHEKPNILSDVG 176
Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLIR 269
+ + +S R+DAL + F +SR+ I+
Sbjct: 177 EQKRVTVSSTRLDALLAHSFGVSRASAQEWIK 208
>gi|261367029|ref|ZP_05979912.1| putative YlmH protein [Subdoligranulum variabile DSM 15176]
gi|282571147|gb|EFB76682.1| S4 domain protein [Subdoligranulum variabile DSM 15176]
Length = 245
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 90/193 (46%), Gaps = 7/193 (3%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
++ + E+ R A +R ++ FL+ + A K A GGY +AER L +
Sbjct: 1 MRRVEELCRVAQNRGIPRYTGFLSDREQVLAQAACHKALFSAARFWGGYDEAERKVLCLE 60
Query: 141 HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF-- 198
PEA +P L+ + H D+LGSIL G+ R +GD+I + A F
Sbjct: 61 PPEAWQEEPLAYLRLAALNAGEDKMPGHRDYLGSILALGLDRACLGDLIADPQDSAVFYA 120
Query: 199 LVVPELADYLITSLEKVGNVSV---SCTRIPLLALEYEPPRTKSFKTIEASLRVDALASA 255
+V+ + +++ + L G+ V C ++P+ + R T+ +SLR DA+ +A
Sbjct: 121 IVLADKQEFIASELTSAGHCPVRAECCEQLPVHVGQ-ATERALREATV-SSLRADAVLAA 178
Query: 256 GFKLSRSKLVNLI 268
SR+K + I
Sbjct: 179 MMHTSRTKAADYI 191
>gi|339624591|ref|ZP_08660380.1| hypothetical protein FfruK3_04010 [Fructobacillus fructosus KCTC
3544]
Length = 264
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 98/214 (45%), Gaps = 14/214 (6%)
Query: 59 QAVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKL 118
QAV +FDD + V +L+ +AS +++ + FL P + +
Sbjct: 5 QAVAQHFDDEERAF--------VAQVLDWLTQASQDYQLVLTHFLNPRERHIVSIIVGDR 56
Query: 119 ADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFG--FQPCSHGDFLGSIL 176
D++ + G + +AE+ RL + PE L + F F H D LG++L
Sbjct: 57 TDIQVRSYGIFDRAEKKRLVIA-PEFFEVGRQDFEELLLQIRFAKKFINLRHKDLLGALL 115
Query: 177 GTGIAREKIGDIILQGEKG-AQFLVVPELADYLITSLEKVGNVSVSCTRI-PLLALEYEP 234
G+ R IGDI++ + G AQ V +L +++++G V ++ AL
Sbjct: 116 AAGVNRSVIGDIVVDQDLGLAQLAVEKSHQIFLTQTVDQIGKAKVHFEQVADSKALVPAV 175
Query: 235 PRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+ F I SLR+DA+ +A F +SR+++ +I
Sbjct: 176 DEEERFVLI-PSLRLDAVIAACFGISRTQVSEMI 208
>gi|450005156|ref|ZP_21826540.1| hypothetical protein SMU57_01777 [Streptococcus mutans NMT4863]
gi|449189020|gb|EMB90704.1| hypothetical protein SMU57_01777 [Streptococcus mutans NMT4863]
Length = 262
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 79/175 (45%), Gaps = 12/175 (6%)
Query: 100 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 154
++FL P V+K S++ KL + + +E RL + + E +D I +
Sbjct: 37 TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91
Query: 155 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
L I N F +H LG+++ GI R +GDII+Q E AQ + + YL +
Sbjct: 92 LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150
Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+G +V IP K + +S+R+D + + KLSR K LI
Sbjct: 151 KIGKAAVVFEEIPFERQITSQSHIKEMNVLVSSMRLDKIIAVVLKLSRRKANQLI 205
>gi|302380712|ref|ZP_07269177.1| S4 domain protein [Finegoldia magna ACS-171-V-Col3]
gi|303233951|ref|ZP_07320600.1| S4 domain protein [Finegoldia magna BVS033A4]
gi|417926557|ref|ZP_12569954.1| hypothetical protein HMPREF9489_0484 [Finegoldia magna
SY403409CC001050417]
gi|302311655|gb|EFK93671.1| S4 domain protein [Finegoldia magna ACS-171-V-Col3]
gi|302494876|gb|EFL54633.1| S4 domain protein [Finegoldia magna BVS033A4]
gi|341588925|gb|EGS32295.1| hypothetical protein HMPREF9489_0484 [Finegoldia magna
SY403409CC001050417]
Length = 258
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 75/171 (43%), Gaps = 9/171 (5%)
Query: 95 REVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG----HPEALTSDPD 150
+ + +DF+ P ++ ++ L DV +A E + + + E + D
Sbjct: 31 KTIYSTDFMNPKEIEYAISILNTETDVGYMATNCPKNCENSIIIMWDRYCYSEEYINMFD 90
Query: 151 IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLIT 210
+ L I + Q SH D LG++L GI REKIGDI K + +L
Sbjct: 91 YIGLLEIQTD---QEISHRDILGAVLNLGINREKIGDIFTHN-KRFYICATNTMIKFLNL 146
Query: 211 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSR 261
+L K+ ++S T I +E + + KSF I S R+D L S +SR
Sbjct: 147 NLTKIKKFNIS-TSIVDKNIEKDEEKYKSFTGIINSERLDCLVSEMANISR 196
>gi|399517498|ref|ZP_10759048.1| hypothetical protein, contains S4-like RNA binding domain
[Leuconostoc pseudomesenteroides 4882]
gi|398647622|emb|CCJ67075.1| hypothetical protein, contains S4-like RNA binding domain
[Leuconostoc pseudomesenteroides 4882]
Length = 265
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 91/192 (47%), Gaps = 6/192 (3%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
++ +L+ ++A ++ + FL P + + + +++ GG AE R +
Sbjct: 20 IQQVLDWVKQADDDYRLILTRFLNPREQYILQTLINRQSGLRSYLYGGVDGAESQRAIIA 79
Query: 141 HPEAL-TSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEK-GAQ 197
PE D + L++ F H LGS++ GI+R+ +GDI+ E+ Q
Sbjct: 80 -PEVFEVKQEDFEIGLLTVQYPKKFATLHHSTILGSLMHLGISRDVLGDILFDNEETNWQ 138
Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPL-LALEYEPPRTKSFKTIEASLRVDALASAG 256
+V ++ Y+ ++ KVG V+V+ L AL + F + +SLR+D + S+
Sbjct: 139 IIVDQKMLAYIQQTVTKVGRVAVNLKAQSLSEALPVLTNWQEQF-ALMSSLRLDVVISSV 197
Query: 257 FKLSRSKLVNLI 268
F+LSRS LI
Sbjct: 198 FQLSRSDTKTLI 209
>gi|365903048|ref|ZP_09440871.1| cell division protein [Lactobacillus malefermentans KCTC 3548]
Length = 260
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 67/153 (43%), Gaps = 18/153 (11%)
Query: 120 DVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSITGNFGFQPCSHGDFLGSILG 177
+VK GGYP AE R+ + +PE D V I F H LG++
Sbjct: 56 NVKMQPYGGYPGAELNRVLI-YPEYFEPKKTDFEVTLFEIIYPTKFADLHHSQVLGTLAN 114
Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRI-------PLLAL 230
G+ RE IGDII GE+ QF V + Y ++++G + V T PL
Sbjct: 115 IGVDREVIGDIITDGERW-QFFVETGITSYFENQVDQIGKIKVHLTPKENSEAVEPLNEW 173
Query: 231 EYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 263
E E +S+R+D++ + F LSR +
Sbjct: 174 EEEGATL-------SSIRLDSIVATAFHLSRHR 199
>gi|126649713|ref|ZP_01721949.1| hypothetical protein BB14905_15985 [Bacillus sp. B14905]
gi|126593432|gb|EAZ87377.1| hypothetical protein BB14905_15985 [Bacillus sp. B14905]
Length = 262
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 84/194 (43%), Gaps = 11/194 (5%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
++ ++ R R +DFL P + + + + G + +AER R+ +
Sbjct: 16 IEQVISWQREVEDRYAPKLTDFLDPRQRFIVTSIIGQDDSMNTLCAGLFNEAERQRMLIY 75
Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFL 199
+D D + A ++ F H D LG++L G+ R K GDI + E QF+
Sbjct: 76 PAYYEPTDKDFQLTAFTLQYPVKFVQLRHPDVLGALLSLGLNRSKFGDIRV-SEHQIQFV 134
Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE-----ASLRVDALAS 254
V E+A+Y+ L +G V V + E EP + +E S+R+D + +
Sbjct: 135 VAKEVAEYVRLHLTGIGKVKVHVESLK----EQEPLLINEDEWLEESHTVTSMRLDVIIA 190
Query: 255 AGFKLSRSKLVNLI 268
K+SR K LI
Sbjct: 191 TVLKVSRQKAQALI 204
>gi|125624828|ref|YP_001033311.1| hypothetical protein llmg_2056 [Lactococcus lactis subsp. cremoris
MG1363]
gi|124493636|emb|CAL98623.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris
MG1363]
Length = 239
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 79/174 (45%), Gaps = 5/174 (2%)
Query: 97 VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG-HPEALTSDPDIVAAL 155
V+ + FL P + E + L +V+ + Q E ++ + + L D +A L
Sbjct: 10 VISTFFLNPREV-EILKTLANKREVQVFSSAELAQTELVKIILAPNFYVLDKDDFDIALL 68
Query: 156 SITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 214
I+ F SH LG+ LG G+ R+++GDII+ K Q V L + S++K
Sbjct: 69 EISYAIKFVQISHAQVLGTFLGQAGVKRQELGDIIVTDRK-IQIFVSKHLVESF-KSIDK 126
Query: 215 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+G +V I L L R + LR+D + + FK+SR+ N++
Sbjct: 127 IGRAAVKIDEISLTDLAQNTERAIQEVVLLDGLRIDKMIAIAFKISRNIATNML 180
>gi|118587342|ref|ZP_01544768.1| hypothetical protein OENOO_64015 [Oenococcus oeni ATCC BAA-1163]
gi|421187177|ref|ZP_15644553.1| cell division protein [Oenococcus oeni AWRIB418]
gi|118432166|gb|EAV38906.1| hypothetical protein OENOO_64015 [Oenococcus oeni ATCC BAA-1163]
gi|399964004|gb|EJN98659.1| cell division protein [Oenococcus oeni AWRIB418]
Length = 256
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 7/168 (4%)
Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG-HPEALTSDPDIVAALSITGN 160
FL P K ++ L K GGY +AE R +G H E +D I + L +
Sbjct: 38 FLNPQEQK-ILLELSKQTGFSVRFDGGYQKAENKRALIGDHKE---NDFQI-SLLQLNYA 92
Query: 161 FGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSV 220
+ H LGS+L GI+ ++IGD+I + + Q L+ LAD+++ ++++ + +
Sbjct: 93 SHYVHLHHSTVLGSLLHHGISYDRIGDVIHEND-NWQLLIDSSLADFVVENVKRAASKKI 151
Query: 221 SCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+ +I + K + + +S R+D L S + SR+ +LI
Sbjct: 152 TFEKISFEKILNPQSDEKEKEIVISSQRIDLLISQIYNFSRAHAKDLI 199
>gi|55822706|ref|YP_141147.1| hypothetical protein str0739 [Streptococcus thermophilus CNRZ1066]
gi|55738691|gb|AAV62332.1| conserved hypothetical protein [Streptococcus thermophilus
CNRZ1066]
Length = 266
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 7/173 (4%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 157
+DFL P + + + L ++K + E R+ + P+ D D + L I
Sbjct: 38 TDFLNPREI-QIVKDLAIYYNLKFFVSSTFDNEEYGRVILA-PDYYELDEDDFEIKRLEI 95
Query: 158 TGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
+ F +H LG++L G+ R+ GD+IL E QF + LA Y I ++ K+G
Sbjct: 96 SYARQFNELTHPKILGALLNQLGLERQVFGDVILDEEGRVQFNIASHLASYAIMTITKIG 155
Query: 217 NVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
VSV+ + + + ++SF + +S+R+D + S K SRS + LI
Sbjct: 156 RVSVTLREVSKDEWISNQEKYSQSF-VLLSSMRLDNVLSTVLKTSRSNALKLI 207
>gi|450082571|ref|ZP_21852414.1| hypothetical protein SMU76_05264 [Streptococcus mutans N66]
gi|449214289|gb|EMC14574.1| hypothetical protein SMU76_05264 [Streptococcus mutans N66]
Length = 262
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLIT 210
++ L I N F +H LG+++ GI R +GDII+Q E AQ + + YL
Sbjct: 89 ISLLEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNA 147
Query: 211 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+ K+G +V IP + + +S+R+D + +A KLSR K LI
Sbjct: 148 QVTKIGKAAVVFEEIPFERQITSQSHIREMNVLVSSMRLDKIIAAVLKLSRRKANQLI 205
>gi|377557353|ref|ZP_09787003.1| hypothetical protein PS3_20614 [Lactobacillus gastricus PS3]
gi|376165759|gb|EHS84700.1| hypothetical protein PS3_20614 [Lactobacillus gastricus PS3]
Length = 261
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 82/187 (43%), Gaps = 5/187 (2%)
Query: 78 IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
I++++ LE R R +L + FL P + + +K GG+ AE R
Sbjct: 18 IDQIQDWLETVR--DQYRPIL-TWFLNPRQRYILTTMVNQDDQIKVAFNGGFANAEMQRA 74
Query: 138 SVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
+ D D + L+I F H +GS+L +GI R GDI++ ++
Sbjct: 75 LIFPDYYQPQDSDFELQLLTIDYPRKFAELHHRQIMGSLLSSGIDRNVFGDILVH-DQDW 133
Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
Q +V ++ Y+ + +VG + +S + A+ + T SLR+DA+ +
Sbjct: 134 QVIVDTKMVTYIQGQVTQVGKIHISFLPQAMSAVIQSQSDWEELSTTVVSLRLDAIVATA 193
Query: 257 FKLSRSK 263
F SR++
Sbjct: 194 FNYSRNR 200
>gi|227431973|ref|ZP_03913993.1| ribosomal protein S4e [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
gi|227352258|gb|EEJ42464.1| ribosomal protein S4e [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
Length = 265
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 88/191 (46%), Gaps = 4/191 (2%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
VK + + +++ + + + FL P + + AD+ GG AE R +
Sbjct: 20 VKQVDDWIQQSRNEYRSILTRFLNPREQYILNVLVNHAADLAVYFNGGVQGAESQRAILI 79
Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL-QGEKGAQF 198
E D + ++ L I F H LGS++ +GI+R IGDI+ Q Q
Sbjct: 80 PKEYPQDDLEFEISLLEIKYPTKFDDLHHSTILGSMMYSGISRNVIGDILYDQTYSRWQI 139
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPL-LALEYEPPRTKSFKTIEASLRVDALASAGF 257
++ ++ Y+ + K+G+V +S L L + ++F + +SLR+D + SAGF
Sbjct: 140 IIDSKMQHYMQQMVTKIGHVQLSLIECDLNNVLPHINDWEENFLLL-SSLRLDTVISAGF 198
Query: 258 KLSRSKLVNLI 268
LSRS LI
Sbjct: 199 DLSRSGAKKLI 209
>gi|339451076|ref|ZP_08654446.1| S4 domain-containing protein [Leuconostoc lactis KCTC 3528]
Length = 263
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 86/186 (46%), Gaps = 6/186 (3%)
Query: 86 EMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL 145
+ R++ + + FL P + + D+ + GG AE R + P
Sbjct: 25 DWIRQSEDEYRTILTPFLNPREQYILTTLVNRADDLTSHFDGGVSGAESQRAIIA-PAVY 83
Query: 146 TSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE 203
D +A L I F H LG+++ GI R +GDI+ Q ++ Q +V +
Sbjct: 84 EIDQTAFELAVLEINYPTKFTELHHAAILGALMHAGIKRAVVGDILGQDQRW-QIIVDSK 142
Query: 204 LADYLITSLEKVGNVSVSCTRIPLL-ALEYEPPRTKSFKTIEASLRVDALASAGFKLSRS 262
+ Y+ ++ +G V ++ T +PL A+ + ++F T+ SLR+DA+ +A F +SRS
Sbjct: 143 MLTYIQQTVTMIGRVKITWTVLPLTQAITAQDDWEETF-TLLPSLRLDAVIAATFDISRS 201
Query: 263 KLVNLI 268
LI
Sbjct: 202 LAKTLI 207
>gi|407477643|ref|YP_006791520.1| S4 domain-containing protein [Exiguobacterium antarcticum B7]
gi|407061722|gb|AFS70912.1| S4 domain protein [Exiguobacterium antarcticum B7]
Length = 257
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVA-QGGYPQAERCRLSVG--HPEALTSDPDIVAALS 156
+DFL P +E + E + A+ +GG+ AER R + + + +D DI A
Sbjct: 34 TDFLDP---REQQITRELVGTKCALFFEGGFEGAERQRALIAPDYYDLDANDFDI-AIYR 89
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
I F SH G++L G+ R K GD+++Q ++ QF V E++ Y+ ++E+ G
Sbjct: 90 IHYPTKFVELSHRQVTGTLLNVGLKRGKFGDVVIQ-DQVVQFAVAKEVSSYIEANVERAG 148
Query: 217 NVSVSCTRIPLLALEYEPP-RTKSFKTIE-----ASLRVDALASAGFKLSRSKLVNLIR 269
T+I L +++E +TK + E +SLR D + S SR K +LI+
Sbjct: 149 K-----TKIRLSVVDFEEQLKTKEQEWQEELGFVSSLRFDTVVSEILGFSRQKAQSLIK 202
>gi|418018046|ref|ZP_12657602.1| putative cell division protein [Streptococcus salivarius M18]
gi|345526895|gb|EGX30206.1| putative cell division protein [Streptococcus salivarius M18]
Length = 267
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 83/176 (47%), Gaps = 13/176 (7%)
Query: 100 SDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAA 154
+DFL P + +E+LA ++ E R+ + PE D D +
Sbjct: 38 TDFLNP----REIQIVEELAHYYNLNFFVSSTLESEEYGRVILA-PEYYELDDDDFEIKR 92
Query: 155 LSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
L I+ F +H LG+++ G+ R+ GDIIL E QF + LA Y I ++
Sbjct: 93 LEISYARQFNKLTHPKVLGALINQLGLDRQVFGDIILDEEGRVQFSIASHLASYAIMTIT 152
Query: 214 KVGNVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+GNVSV+ + + + ++SF + +S+R+D + + LSRS + LI
Sbjct: 153 KIGNVSVTLKEVSKDDWISNQENYSQSF-VLLSSMRLDNVLATILNLSRSNALKLI 207
>gi|450071266|ref|ZP_21848058.1| hypothetical protein SMU74_02732 [Streptococcus mutans M2A]
gi|450107178|ref|ZP_21860918.1| hypothetical protein SMU81_07445 [Streptococcus mutans SF14]
gi|450160934|ref|ZP_21880262.1| hypothetical protein SMU94_06913 [Streptococcus mutans 66-2A]
gi|449212548|gb|EMC12909.1| hypothetical protein SMU74_02732 [Streptococcus mutans M2A]
gi|449222346|gb|EMC22075.1| hypothetical protein SMU81_07445 [Streptococcus mutans SF14]
gi|449239396|gb|EMC38119.1| hypothetical protein SMU94_06913 [Streptococcus mutans 66-2A]
Length = 262
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 80/175 (45%), Gaps = 12/175 (6%)
Query: 100 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 154
++FL P V+K S++ KL + + +E RL + + E +D I +
Sbjct: 37 TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91
Query: 155 LSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
L I N F +H LG+++ GI R +GDII+Q E AQ + + YL +
Sbjct: 92 LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150
Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+G +V IP + + +S+R+D + +A KLSR + LI
Sbjct: 151 KIGKAAVVFEEIPFERQIISQSHIREMNVLVSSMRLDKIIAAVLKLSRRQANQLI 205
>gi|325661583|ref|ZP_08150207.1| hypothetical protein HMPREF0490_00941 [Lachnospiraceae bacterium
4_1_37FAA]
gi|331084857|ref|ZP_08333945.1| hypothetical protein HMPREF0987_00248 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|325472110|gb|EGC75324.1| hypothetical protein HMPREF0490_00941 [Lachnospiraceae bacterium
4_1_37FAA]
gi|330410951|gb|EGG90373.1| hypothetical protein HMPREF0987_00248 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 256
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 83/185 (44%), Gaps = 13/185 (7%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
K ++E+++ A R + ++DFL L + GGY +ER +++
Sbjct: 10 KRLIELSKIAYHRNFITYTDFLNLNELNILHTLPKDTLYTPYRTFGGYASSER-QIAAFL 68
Query: 142 PEALTSDPDI---------VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQG 192
P+AL +I + L + F Q SH D+LG++L GI R KIGDII++
Sbjct: 69 PDALCLRSEIEDLAYPMGIIHILPRSQKFSEQ-LSHRDYLGALLSLGIERSKIGDIIVE- 126
Query: 193 EKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDAL 252
E+GA V +L Y+ + ++ V Y K T+ AS+R+D L
Sbjct: 127 EQGAFVFVSDKLLSYVCKEMTQIRRTQVIVCEESFSEFHYTQKYEKITGTV-ASVRLDTL 185
Query: 253 ASAGF 257
S F
Sbjct: 186 LSLAF 190
>gi|299535882|ref|ZP_07049202.1| hypothetical protein BFZC1_07660 [Lysinibacillus fusiformis ZC1]
gi|424738822|ref|ZP_18167251.1| hypothetical protein C518_3366 [Lysinibacillus fusiformis ZB2]
gi|298728634|gb|EFI69189.1| hypothetical protein BFZC1_07660 [Lysinibacillus fusiformis ZC1]
gi|422947306|gb|EKU41703.1| hypothetical protein C518_3366 [Lysinibacillus fusiformis ZB2]
Length = 262
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 87/193 (45%), Gaps = 9/193 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSV- 139
++ ++ R R +DFL P + + +K G + +AER R+ +
Sbjct: 16 IEQVISWQREVEDRYAPKLTDFLDPRQRFIVTSIIGQNDTLKTACTGLFEEAERQRMLIF 75
Query: 140 -GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
+ EA+ D +VA +I F H D LG++L G+ R K GDI + ++ QF
Sbjct: 76 PTYYEAIEEDFQLVA-FTIQYPVKFVQLRHPDVLGALLSLGLNRGKFGDIRV-NDQQVQF 133
Query: 199 LVVPELADYLITSLEKVGNVSV---SCTRIPLLALEYEPPRTKSFKTIEASLRVDALASA 255
+V E+A+Y+ L +G V V S L + E +S +S+R+D + +
Sbjct: 134 VVAQEVAEYVRLHLTGIGKVKVHIESLKEADSLIVNEEEWLEESHTV--SSMRLDVIIAT 191
Query: 256 GFKLSRSKLVNLI 268
+SR K LI
Sbjct: 192 VLNVSRQKAQALI 204
>gi|395242913|ref|ZP_10419901.1| S4 domain protein [Lactobacillus hominis CRBIP 24.179]
gi|394484733|emb|CCI80909.1| S4 domain protein [Lactobacillus hominis CRBIP 24.179]
Length = 266
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 81/195 (41%), Gaps = 21/195 (10%)
Query: 80 EVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA--DVKAVAQGGYPQAERCRL 137
EV + + R ++E + +DF+ P M +++ + + GGY AE+ R
Sbjct: 21 EVDYYTGLFNRLIYQQEPILTDFINP----RQMYIFKEIVGNEAQIYHDGGYKNAEKQR- 75
Query: 138 SVGHPEALTSDPDI--------VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
AL D + V L I N + +H LG + +G+ GDII
Sbjct: 76 ------ALLCDWNAPYNLEHFEVQPLQIEYNKKWDKLTHSQILGVLANSGVEISSFGDII 129
Query: 190 LQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRV 249
E Q V +L D+ I ++ ++G V I + S + SLR+
Sbjct: 130 NDEEDNWQIFVKKDLTDFFIRNITRIGRSKVKLKPISRNEVLNVADDATSKSAVSISLRL 189
Query: 250 DALASAGFKLSRSKL 264
DA+ ++ +SRS++
Sbjct: 190 DAVIASAANMSRSQV 204
>gi|296328063|ref|ZP_06870597.1| RNA binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC
23726]
gi|296154839|gb|EFG95622.1| RNA binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC
23726]
Length = 241
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 104/214 (48%), Gaps = 23/214 (10%)
Query: 78 IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
+E++++ +++A + + V++S+ P S + K + +K +G E+ L
Sbjct: 5 LEKIENYIKLAEKTDT---VIYSNQFFPV----SQLNNLKYSGIKFSFKGLNEDCEKKLL 57
Query: 138 SVGHPEALTSD----PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGE 193
+V +PE T D P V I F H +LG+IL GI RE +GD+I++ +
Sbjct: 58 AV-YPECFTEDYLYFP--VKYFKIIKKSKFISLEHKHYLGNILSLGIKREILGDLIVKND 114
Query: 194 KGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVD 250
+ +++ + D+L +L ++ + V I E E P+ + FK + +SLR+D
Sbjct: 115 ECYG-IILENMFDFLKENLLRINSSPVEIIEID----EKEVPQNE-FKELNIRLSSLRLD 168
Query: 251 ALASAGFKLSRSKLVNLIRYSSLASLVQISAKAS 284
+L S LSR+ VN I ++ +I + S
Sbjct: 169 SLVSELTNLSRALSVNYIDLGNVQVNYEIQREKS 202
>gi|322517030|ref|ZP_08069918.1| S4 domain-containing protein YlmH [Streptococcus vestibularis ATCC
49124]
gi|322124398|gb|EFX95898.1| S4 domain-containing protein YlmH [Streptococcus vestibularis ATCC
49124]
Length = 230
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 5/172 (2%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 157
+DFL P + + + L ++K + E R+ + P+ D D + L I
Sbjct: 2 TDFLNPREI-QIVKDLANYYNLKFFVSSTFDNEEYGRVILA-PDYYELDEDDFEIKRLEI 59
Query: 158 TGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
+ F H LG+++ G+ R+ GD+IL E QF + LA Y I ++ K+G
Sbjct: 60 SYARQFNKLIHPKILGALINQLGLERQVFGDVILDEEGRVQFNIASHLASYAIMTITKIG 119
Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
VSV+ + F + +S+R+D + + K+SRS + LI
Sbjct: 120 KVSVTLREASKDDWISNQEKYSQFFVLLSSMRLDNVLATVLKISRSNALKLI 171
>gi|223986954|ref|ZP_03636923.1| hypothetical protein HOLDEFILI_04249, partial [Holdemania
filiformis DSM 12042]
gi|223961079|gb|EEF65622.1| hypothetical protein HOLDEFILI_04249 [Holdemania filiformis DSM
12042]
Length = 213
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 90/183 (49%), Gaps = 13/183 (7%)
Query: 90 RASSRREVLHSDFLTPPVLKESMMALEKL--ADVKAVAQGGYPQAERCRLSVGHPEALTS 147
+ +RR+ + S FL+P AL+ D+ GG +AER +L + PE
Sbjct: 24 QCRTRRKPVRSCFLSP----SQQEALKPFLPWDLAYRWDGGCAEAERKKLILA-PEEDAC 78
Query: 148 DPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADY 207
DIV L+ + F H D LG+++ + R + GD+ ++ + + ELADY
Sbjct: 79 VSDIVC-LTARISDKFVQVKHPDVLGALMNLDLDRSQFGDLWVEPGRIVIY-TSEELADY 136
Query: 208 LITSLEKVGNVSVSCTRIPLLALEYEP-PRTKSFKTIEASLRVDALASAGFKLSRSKLVN 266
+ +L ++ +S+ R ++ YEP + ++ I +LR+D + + ++SR+K +
Sbjct: 137 VCMNLTRIHKLSIRLERSSMM---YEPVVKKQALTVIVTALRLDCVIAGLCRMSRAKAQD 193
Query: 267 LIR 269
IR
Sbjct: 194 WIR 196
>gi|450064071|ref|ZP_21845250.1| hypothetical protein SMU70_08128 [Streptococcus mutans NLML5]
gi|449204034|gb|EMC04857.1| hypothetical protein SMU70_08128 [Streptococcus mutans NLML5]
Length = 263
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 80/175 (45%), Gaps = 12/175 (6%)
Query: 100 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 154
++FL P V+K S++ KL + + +E RL + + E +D I +
Sbjct: 38 TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 92
Query: 155 LSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
L I N F +H LG+++ GI R +GDII+Q E AQ + + YL +
Sbjct: 93 LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 151
Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+G +V IP + + +S+R+D + +A KLSR + LI
Sbjct: 152 KIGKAAVVFEEIPFERQITSQSHIREMNVLVSSMRLDKIIAAVLKLSRRQANQLI 206
>gi|262037759|ref|ZP_06011201.1| oligoendopeptidase F [Leptotrichia goodfellowii F0264]
gi|261748231|gb|EEY35628.1| oligoendopeptidase F [Leptotrichia goodfellowii F0264]
Length = 885
Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 53/188 (28%), Positives = 86/188 (45%), Gaps = 24/188 (12%)
Query: 101 DFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSV----------GHPEALTSDPD 150
+F TP + K+ EK+ ++K A G + ++R +++ E + SD D
Sbjct: 39 EFYTPNIWKK---LTEKIENIKIEANGIFENSDRRQIAFIPEGFYGKNSSGIEEIYSDAD 95
Query: 151 ---------IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVV 201
L I N F+ H DFLGS+ G I RE +GD+I E A V
Sbjct: 96 GDNKNSAEFPSKLLKIKINSRFREYGHKDFLGSLTGLNIKRELMGDLIFDKET-AYVPVS 154
Query: 202 PELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA-SLRVDALASAGFKLS 260
+++DY++T L+++G S + E P K I S R+D++ +A LS
Sbjct: 155 DKISDYILTELKQIGRDKCSVEEEDIKNREIIPEYKYDDKFITVPSKRLDSIVAAITLLS 214
Query: 261 RSKLVNLI 268
R+K++ I
Sbjct: 215 RNKVIEPI 222
>gi|379012021|ref|YP_005269833.1| hypothetical protein Awo_c21690 [Acetobacterium woodii DSM 1030]
gi|375302810|gb|AFA48944.1| hypothetical protein containing a RNA-binding S4 domain
[Acetobacterium woodii DSM 1030]
Length = 245
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 64/138 (46%), Gaps = 7/138 (5%)
Query: 127 GGYPQAERCRLSVGHPEAL-TSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGY AER L + +PE L ++ D + A+ F P H + LG ++ GI RE
Sbjct: 52 GGYSDAERKMLCI-YPEYLLEAELDWPIFAIEFDKTF---PLDHRNVLGELMHLGITRES 107
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
+GDI + G+K Q LV L DYL T+ +V ++ + K I
Sbjct: 108 VGDINI-GDKTVQILVHQRLHDYLWTNFNQVKGREINVRLKEYAQISGFQKEFKRLSVIV 166
Query: 245 ASLRVDALASAGFKLSRS 262
AS R+D + + + SR
Sbjct: 167 ASNRLDGIINKIWGFSRQ 184
>gi|449967082|ref|ZP_21812613.1| hypothetical protein SMU40_08873 [Streptococcus mutans 15VF2]
gi|450048099|ref|ZP_21839652.1| hypothetical protein SMU66_09372 [Streptococcus mutans N34]
gi|450088528|ref|ZP_21854815.1| hypothetical protein SMU77_07276 [Streptococcus mutans NV1996]
gi|450132364|ref|ZP_21870018.1| hypothetical protein SMU88_03772 [Streptococcus mutans NLML8]
gi|450143397|ref|ZP_21873436.1| hypothetical protein SMU9_01432 [Streptococcus mutans 1ID3]
gi|450180689|ref|ZP_21887384.1| hypothetical protein SMU99_03694 [Streptococcus mutans 24]
gi|449152356|gb|EMB56066.1| hypothetical protein SMU9_01432 [Streptococcus mutans 1ID3]
gi|449153233|gb|EMB56920.1| hypothetical protein SMU88_03772 [Streptococcus mutans NLML8]
gi|449169407|gb|EMB72183.1| hypothetical protein SMU40_08873 [Streptococcus mutans 15VF2]
gi|449197160|gb|EMB98367.1| hypothetical protein SMU66_09372 [Streptococcus mutans N34]
gi|449216439|gb|EMC16557.1| hypothetical protein SMU77_07276 [Streptococcus mutans NV1996]
gi|449248096|gb|EMC46359.1| hypothetical protein SMU99_03694 [Streptococcus mutans 24]
Length = 262
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 80/175 (45%), Gaps = 12/175 (6%)
Query: 100 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 154
++FL P V+K S++ KL + + +E RL + + E +D I +
Sbjct: 37 TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91
Query: 155 LSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
L I N F +H LG+++ GI R +GDII+Q E AQ + + YL +
Sbjct: 92 LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150
Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+G +V IP + + +S+R+D + +A KLSR + LI
Sbjct: 151 KIGKAAVVFEEIPFERQITSQSHIREMNVLVSSMRLDKIIAAVLKLSRRQANQLI 205
>gi|450051080|ref|ZP_21840652.1| hypothetical protein SMU68_04771 [Streptococcus mutans NFSM1]
gi|449202211|gb|EMC03150.1| hypothetical protein SMU68_04771 [Streptococcus mutans NFSM1]
Length = 262
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 80/175 (45%), Gaps = 12/175 (6%)
Query: 100 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 154
++FL P V+K S++ KL + + +E RL + + E +D I +
Sbjct: 37 TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91
Query: 155 LSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
L I N F +H LG+++ GI R +GDII+Q E AQ + + YL +
Sbjct: 92 LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150
Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+G +V IP + + +S+R+D + +A KLSR + LI
Sbjct: 151 KIGEAAVVFEEIPFERQITSQSHIREMNVLVSSMRLDKIIAAVLKLSRRQANQLI 205
>gi|295692695|ref|YP_003601305.1| cell division protein, s4-like domain [Lactobacillus crispatus ST1]
gi|295030801|emb|CBL50280.1| Cell division protein, S4-like domain [Lactobacillus crispatus ST1]
Length = 266
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 10/187 (5%)
Query: 94 RREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD--I 151
+ E + +DFL P K +++ D GGYP AE+ R+ + E L P
Sbjct: 34 KHEPILTDFLDPG--KRAILRTIVGNDAFVQEYGGYPNAEKKRVYLSE-EWLNLRPSDYQ 90
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
+ I F +H LG++ +GI GDII + QF E+ ++
Sbjct: 91 IQPYEIEYPQKFTKINHSVILGTLANSGIDTSIFGDIITDNQGKWQFFTKKEMTEFFEEQ 150
Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE--ASLRVDALASAGFKLSRSKLVNLIR 269
++++G V P+ E P S + E AS+R+DA+ S + SR ++ +I
Sbjct: 151 IDRIGRAKVKLR--PISFKEVLVPEDDSIEKTEIVASMRIDAVLSGISRQSRGQIQKMIN 208
Query: 270 YSSLASL 276
S L L
Sbjct: 209 -SQLVKL 214
>gi|328957133|ref|YP_004374519.1| cell shape determination protein [Carnobacterium sp. 17-4]
gi|328673457|gb|AEB29503.1| factor involved in shape determination, RNA-binding fold protein
[Carnobacterium sp. 17-4]
Length = 260
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 157
++FL P L + K +++ + GGY AER R + P T D + I
Sbjct: 36 TNFLDPRQLHIVKTIVGKNSEITIHSFGGYEAAERVRAFIC-PSYFTPKQDDFGITICEI 94
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
F SHG LG++L TG+ R+ GDII G + Q V Y+ + +G
Sbjct: 95 RYPIKFASLSHGKVLGTLLSTGLKRDYFGDIISDGTR-WQVFVENTTKSYVEQQVISIGK 153
Query: 218 VSVSCTR-------IPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
V+V +P+ E +S+R+D L S+ FK+SR + +I
Sbjct: 154 VAVRMEERDYTDILVPIDNWTIESQTV-------SSMRLDTLVSSVFKISRQRAKQMI 204
>gi|345860008|ref|ZP_08812337.1| S4 domain protein [Desulfosporosinus sp. OT]
gi|344326869|gb|EGW38318.1| S4 domain protein [Desulfosporosinus sp. OT]
Length = 265
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 13/166 (7%)
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIARE 183
+GG+P+AER R+ VG P T DP ++ + + + H LGS++G G R+
Sbjct: 66 EGGFPEAERVRIIVG-PWGETLDPTDADISLIWVRPSDSRAQLEHRQILGSLMGLGFKRD 124
Query: 184 KIGDIILQGEKGAQFLVVPELADYLITSLEKVG----NVSVSCTRIPLLALEYEPPRTKS 239
+GD I G +G E+A +LI + G VS+ C + + Y +S
Sbjct: 125 VLGD-IQAGRRGFYIATTAEIASFLIDHWIQAGREKIEVSLYCEKPDV----YPDLGEES 179
Query: 240 FKTIEASLRVDALASAGFKLSRSKLVNLIRYSSLASLVQISAKASA 285
T+ +S R+DAL + F ++RS + I + + +KA A
Sbjct: 180 RITVNSS-RIDALIANAFGVARSNALQWITQGKVRRDGLVVSKAEA 224
>gi|226324966|ref|ZP_03800484.1| hypothetical protein COPCOM_02758 [Coprococcus comes ATCC 27758]
gi|225206314|gb|EEG88668.1| S4 domain protein [Coprococcus comes ATCC 27758]
Length = 258
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 95/198 (47%), Gaps = 15/198 (7%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
K ++E++ A R +++SDFL L + V GGY +ER +++
Sbjct: 10 KRLIELSNNAYQRGIIMYSDFLNLNELNILHTTPKDSFPVPYRTFGGYDPSER-QMAAFL 68
Query: 142 PEALTSDPD-----------IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
P+A D I+ + F + SH D+LG++L GI R K GDI++
Sbjct: 69 PDAFYMYMDEESIRSTYPIRILKISPLQPKFA-EELSHRDYLGALLNLGITRAKTGDILI 127
Query: 191 QGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVD 250
+K A V EL ++L+ L +V + +V + ++E P+ + K AS+R+D
Sbjct: 128 H-DKEAYVFVHQELTEFLVKELTRVRHTTVRAVEVENADFKWE-PKYEEIKGTVASVRLD 185
Query: 251 ALASAGFKLSRSKLVNLI 268
+L S F SRSKL LI
Sbjct: 186 SLLSLAFSSSRSKLTALI 203
>gi|377809539|ref|YP_005004760.1| hypothetical protein PECL_811 [Pediococcus claussenii ATCC BAA-344]
gi|361056280|gb|AEV95084.1| hypothetical protein PECL_811 [Pediococcus claussenii ATCC BAA-344]
Length = 262
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 79/176 (44%), Gaps = 4/176 (2%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSV--GHPEALTSDPDIVAALSI 157
++FL P + ++ D++ GG+ +E R V + + + +D ++ + L I
Sbjct: 36 TNFLNPREQYILQTLVNRVDDIRVEFDGGFSNSELKRGLVFPDYFQPIEADFNL-SILMI 94
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
F H LG+ GI R GDII +GE Q +V EL+++ + + ++G
Sbjct: 95 DYPTKFAELEHRQILGTFANLGIERNTFGDIISEGETW-QIIVNRELSNFFLNEVTRIGK 153
Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSL 273
+ V + + + + T SLR+D + S F +SR + LI + +
Sbjct: 154 IKVQLKELEMTNIIQPSEDWEETDTTVKSLRLDLVISNVFNVSRQRAKALIEHKRV 209
>gi|212639640|ref|YP_002316160.1| hypothetical protein Aflv_1814 [Anoxybacillus flavithermus WK1]
gi|212561120|gb|ACJ34175.1| Uncharacterized conserved protein, contains S4-like domain
[Anoxybacillus flavithermus WK1]
Length = 257
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 73/141 (51%), Gaps = 8/141 (5%)
Query: 127 GGYPQAERCRLSVGHPEALT-SDPDIVAAL-SITGNFGFQPCSHGDFLGSILGTGIAREK 184
GG ER R ++ +P + ++ D +L S+ F H D LG++L G+ REK
Sbjct: 61 GGSSSVERKR-ALLYPTYMQPNEEDFQLSLFSVRYPKKFVTLGHRDVLGALLSLGVKREK 119
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLAL--EYEPPRTKSFKT 242
GDI++ + QF+V E+A ++ ++ +G VS PL L E ++F
Sbjct: 120 FGDIVIVDD-IIQFVVAKEIAPFVKMNVTTIGKAKVSLEEQPLSQLLDVKEEWEEETFTV 178
Query: 243 IEASLRVDALASAGFKLSRSK 263
+SLR+DA+ + F++SR K
Sbjct: 179 --SSLRLDAILAQCFRISRQK 197
>gi|227874237|ref|ZP_03992436.1| possible ribosomal protein S4e [Oribacterium sinus F0268]
gi|227839906|gb|EEJ50337.1| possible ribosomal protein S4e [Oribacterium sinus F0268]
Length = 254
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 96/196 (48%), Gaps = 25/196 (12%)
Query: 83 HILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERCRLSV 139
H+ ++ R+A R V +S FL+ +E + LEK+ K + GG +AER
Sbjct: 10 HVEDIWRKAEERGIVRNSPFLSE---RERGLFLEKIKRERGAKFLLLGG-EEAERQAFFF 65
Query: 140 GHPEALTSD--------PDIVAALSITGN---FGFQPCSHGDFLGSILGTGIAREKIGDI 188
+P + + + V L I G F + SH D LG+I+ GI RE +GDI
Sbjct: 66 -YPSFMEEEECRELLLEDNPVVLLEIQGKQKKFS-EELSHRDVLGAIMSLGIEREMLGDI 123
Query: 189 ILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTI-EASL 247
+ EK +L + ++ DYL+ +L+++ + SV I + P + + + I AS
Sbjct: 124 FFRDEKSYVYL-LRKMKDYLLENLQQIRHTSVE---IKECEEAFVPKQERIEEQIFAASE 179
Query: 248 RVDALASAGFKLSRSK 263
R+D + SA F LSR K
Sbjct: 180 RLDGIVSAVFHLSRGK 195
>gi|335045423|ref|ZP_08538446.1| S4 domain protein [Oribacterium sp. oral taxon 108 str. F0425]
gi|333759209|gb|EGL36766.1| S4 domain protein [Oribacterium sp. oral taxon 108 str. F0425]
Length = 254
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
Query: 164 QPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCT 223
+ SH D LG+++ GI+RE++GDI+ Q + FL + ++ DY+ +L + + +V C
Sbjct: 99 EKLSHRDVLGAVMNLGISREQVGDILFQEDVSYLFL-LRKMKDYVAENLSTIRHTAVQCK 157
Query: 224 RIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSR 261
+ + +E R + S R+DA+ SA F LSR
Sbjct: 158 EV--VEMEGMERREVEERIFVPSERLDAIVSAVFHLSR 193
>gi|357637966|ref|ZP_09135839.1| S4 domain protein [Streptococcus urinalis 2285-97]
gi|418417463|ref|ZP_12990658.1| hypothetical protein HMPREF9318_01406 [Streptococcus urinalis
FB127-CNA-2]
gi|357586420|gb|EHJ55828.1| S4 domain protein [Streptococcus urinalis 2285-97]
gi|410871382|gb|EKS19330.1| hypothetical protein HMPREF9318_01406 [Streptococcus urinalis
FB127-CNA-2]
Length = 262
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLIT 210
+A + I+ N F HG LG+++ GI REKIGDI + + AQ LV + L
Sbjct: 89 LALIEISYNAKFNHLKHGQILGTLINELGIKREKIGDIYVH-DGFAQVLVDCSIVALLKQ 147
Query: 211 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
S+ ++ VS I ++ + + +S+R+D + ++ FKLSR++ ++LI
Sbjct: 148 SITRIARAKVSVKEISYNQFVRPEIANQTIELLLSSMRLDKIVASTFKLSRNQAISLI 205
>gi|15615110|ref|NP_243413.1| hypothetical protein BH2547 [Bacillus halodurans C-125]
gi|10175167|dbj|BAB06266.1| BH2547 [Bacillus halodurans C-125]
Length = 258
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 83/193 (43%), Gaps = 10/193 (5%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ ++E S + +DFL P + + + DV GG AER R +
Sbjct: 15 IDQVMEWKADVSMQYTWKRTDFLDPREQEIVDALVGRNDDVSVSFWGGSEHAERKRACLI 74
Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFL 199
P ++ D + ++ F H LG+ + G+ REK GDI++ E+ Q +
Sbjct: 75 PPYLELAEEDYGLTLFELSYPKKFLTIDHRQVLGACMSLGVKREKFGDILVADER-IQLV 133
Query: 200 VVPELADYLITSLEKVGNVSVSCTRIP----LLALEYEPPRTKSFKTIEASLRVDALASA 255
V E+A+++ L VG V + L+ E RT + +SLR+DA+
Sbjct: 134 VATEIAEFVRLHLTSVGKAQVEMVELGFEQMLVTTESWHERTATV----SSLRLDAVIGE 189
Query: 256 GFKLSRSKLVNLI 268
LSR+K L+
Sbjct: 190 MLSLSRAKAAELV 202
>gi|395242180|ref|ZP_10419179.1| S4 domain protein [Lactobacillus pasteurii CRBIP 24.76]
gi|394480541|emb|CCI85419.1| S4 domain protein [Lactobacillus pasteurii CRBIP 24.76]
Length = 267
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 91/210 (43%), Gaps = 8/210 (3%)
Query: 80 EVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAV-AQGGYPQAERCR-- 136
++ I+++ R + + + FL P + + E + + + GGY +ER R
Sbjct: 21 DIDEIIDIYNRLMYSDDEILTSFLDPA---QRYILNEVIGQASLIQSYGGYKDSERRRVY 77
Query: 137 LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
LS L D +IV L I F H D LG++ +G++ GDII G
Sbjct: 78 LSSNWNGILPDDFEIVP-LEIEYPSKFISLRHSDILGTLANSGVSLNTFGDIIGDGMGRW 136
Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
QF V +LA + + ++G V +I + + I +S+R+DA+ S+
Sbjct: 137 QFFVKKDLAVFFTDQISRIGKNKVRIKQISPKEVLVPEDNSIEVTAIVSSMRLDAILSSL 196
Query: 257 FKLSRSKLVNLIRYSSLASLVQISAKASAI 286
K SR ++ LI A L + K S I
Sbjct: 197 SKQSRVQIKQLIE-GGQAKLNWLETKNSNI 225
>gi|402312199|ref|ZP_10831129.1| hypothetical protein HMPREF1140_0953 [Lachnospiraceae bacterium
ICM7]
gi|400370860|gb|EJP23842.1| hypothetical protein HMPREF1140_0953 [Lachnospiraceae bacterium
ICM7]
Length = 249
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 93/191 (48%), Gaps = 19/191 (9%)
Query: 85 LEMARRASSRREVLHSDFLT--PPVLKESMMALEKLADVKAVAQGGYPQAER---CRLSV 139
L++AR A + V++S FL + E++ + L +++ V GGY +AER C
Sbjct: 13 LDLARNAYFKNIVMYSMFLNLNEQTIFETIQ--KDLPNIRYVMFGGYSEAERKIVCFYCD 70
Query: 140 GHPEALTSDPDIVAALSIT-GNFGF-QPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
PE D++ + I+ N F +H DFLG+++ GI R +GDI + + A
Sbjct: 71 NIPEF-----DMLEYIKISPVNKKFADDLTHRDFLGALMNLGIERHMVGDICIV-DNTAH 124
Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA-SLRVDALASAG 256
+ +++ +I+ L V V R A E + +K I S R+D++ +
Sbjct: 125 IITFKSMSETIISELTTVKRTKVVLERES--ADELKAVNRVEYKKINIPSERLDSIIGSI 182
Query: 257 FKLSRSKLVNL 267
+ +SRSK VNL
Sbjct: 183 YNISRSK-VNL 192
>gi|295105662|emb|CBL03206.1| Uncharacterized conserved protein, contains S4-like domain
[Faecalibacterium prausnitzii SL3/3]
Length = 272
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 92/194 (47%), Gaps = 8/194 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLS 138
++HI ++A A SR +S FL+ + AL + A V+ + GG+P+AER L
Sbjct: 27 MRHIEDLADAAFSRGIARYSAFLSDREQDLARAALGR-AGVRDGWRFDGGWPEAERRVLC 85
Query: 139 VGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEK-GAQ 197
+ + P L G +H D+LGS++G + RE +GDI+L + G
Sbjct: 86 LEPEYSYGECPVRCVQLQCRALPGAALPAHKDYLGSLMGLALKREALGDILLPADAPGTA 145
Query: 198 FLVVPELADYLIT-SLEKVGNVSVSCTRI--PLLALEYEPPRTKSFKTIEASLRVDALAS 254
++ E A LI L + G + VS TR+ P + P + +SLR+DA+ S
Sbjct: 146 YVFALEPAAKLICRELCQAGRIEVS-TRLLEPEEIPAFPAPERQLLTATVSSLRLDAVLS 204
Query: 255 AGFKLSRSKLVNLI 268
A +SR LI
Sbjct: 205 AMLHVSRGTAAELI 218
>gi|19703517|ref|NP_603079.1| RNA binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
gi|19713607|gb|AAL94378.1| RNA binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
Length = 241
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 104/214 (48%), Gaps = 23/214 (10%)
Query: 78 IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
+E++++ +++A + + +++S+ P S + K + +K +G + E+ L
Sbjct: 5 LEKIENYIKLAEKTDT---IIYSNQFFPI----SQLNNLKYSGLKFSFKGLNEECEKKLL 57
Query: 138 SVGHPEALTSD----PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGE 193
+V +PE T D P V I F H +LG+IL GI RE +GD+I++ +
Sbjct: 58 AV-YPECFTEDYLYFP--VKYFKIIKKSKFISLEHKHYLGNILSLGIKREILGDLIVKND 114
Query: 194 KGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVD 250
+ +++ + D+L +L ++ + V I E E P + FK + +SLR+D
Sbjct: 115 ECYG-IILENMFDFLKENLLRINSSPVEIIEID----EREVPENE-FKELNIRLSSLRLD 168
Query: 251 ALASAGFKLSRSKLVNLIRYSSLASLVQISAKAS 284
+L S LSR+ VN I ++ +I + S
Sbjct: 169 SLVSELTNLSRAVSVNYIDLGNVQVNYEIQREKS 202
>gi|58337123|ref|YP_193708.1| cell-division protein [Lactobacillus acidophilus NCFM]
gi|227903698|ref|ZP_04021503.1| ribosomal protein S4e [Lactobacillus acidophilus ATCC 4796]
gi|58254440|gb|AAV42677.1| cell-division protein [Lactobacillus acidophilus NCFM]
gi|227868585|gb|EEJ76006.1| ribosomal protein S4e [Lactobacillus acidophilus ATCC 4796]
Length = 266
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 64/146 (43%), Gaps = 7/146 (4%)
Query: 127 GGYPQAERCRLSVGHPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGY AE+ R+ + E + PD + I F +H LG++ +GI +
Sbjct: 65 GGYANAEKKRVYLSE-EWVNLRPDNYQIQPYEIEYPQKFVKITHSSILGTLANSGINTDA 123
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
GDII QF EL D+ ++++G V P+ P S + E
Sbjct: 124 FGDIITDDNGTWQFFAKKELTDFFEEQVDRIGRTQVKLK--PISFKNVIVPEDDSIEKTE 181
Query: 245 --ASLRVDALASAGFKLSRSKLVNLI 268
AS+RVDA+ S K SR ++ +I
Sbjct: 182 IIASMRVDAVLSGISKQSRGQIQKMI 207
>gi|294784591|ref|ZP_06749880.1| RNA binding protein [Fusobacterium sp. 3_1_27]
gi|294487807|gb|EFG35166.1| RNA binding protein [Fusobacterium sp. 3_1_27]
Length = 241
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 104/214 (48%), Gaps = 23/214 (10%)
Query: 78 IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
+E++++ +++A + + V++S+ P S + K + +K +G E+ L
Sbjct: 5 LEKIENYIKLAEKTDT---VIYSNQFFPV----SQLNNLKYSGMKFSFKGLNEDCEKKLL 57
Query: 138 SVGHPEALTSD----PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGE 193
+V +PE T D P V I F H +LG+ILG GI RE +GD+I++
Sbjct: 58 AV-YPEYFTEDYLYFP--VKYFKIIKKSKFINLEHKHYLGNILGLGIKREILGDLIVKNN 114
Query: 194 KGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVD 250
+ +++ + D+L +L ++ + + I E + P+ + FK + +SLR+D
Sbjct: 115 ECYG-IILENMFDFLKENLLRINSSPIEIIEIT----ERDVPQNE-FKELNIRLSSLRLD 168
Query: 251 ALASAGFKLSRSKLVNLIRYSSLASLVQISAKAS 284
+L S LSR+ VN I ++ +I + S
Sbjct: 169 SLVSELTNLSRALSVNYIDLGNVQVNYEIQREKS 202
>gi|224476293|ref|YP_002633899.1| putative RNA-binding protein [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222420900|emb|CAL27714.1| putative RNA-binding protein [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 203
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 69/139 (49%), Gaps = 5/139 (3%)
Query: 126 QGGYPQAERCRLSVGHPEALT-SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIARE 183
QGG +ER R + PE + D D + L + F H + LG+++ I R+
Sbjct: 6 QGGNSDSERKRAMIS-PEYFSPKDEDFELVLLELEYPEKFATIDHRNVLGTLMSLSIERD 64
Query: 184 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTI 243
++GDI++ G+K QF++ + Y++ L+++ NV V +P+ + + +
Sbjct: 65 QLGDIVV-GDK-IQFILTKNIESYIMLELKRIKNVPVKLHEVPMQDMIQSKENWTTHQAT 122
Query: 244 EASLRVDALASAGFKLSRS 262
++LR+D + + SRS
Sbjct: 123 VSALRLDVVLKEMIRKSRS 141
>gi|386344430|ref|YP_006040594.1| hypothetical protein STH8232_0932 [Streptococcus thermophilus JIM
8232]
gi|339277891|emb|CCC19639.1| hypothetical protein STH8232_0932 [Streptococcus thermophilus JIM
8232]
Length = 266
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 7/173 (4%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 157
+DFL P + + + L ++K + E R+ + P+ D D + L I
Sbjct: 38 TDFLNPREI-QIVKDLANYYNLKFFVSSTFDNEEYGRVILA-PDYYELDEDDFEIKRLEI 95
Query: 158 TGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
+ F +H LG++L G+ R+ GD+IL E QF + LA Y I ++ K+G
Sbjct: 96 SYARQFNKLTHPKILGALLNQLGLERQVFGDVILDEEGRVQFNIASHLASYAIMTITKIG 155
Query: 217 NVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
VSV+ + + + ++SF + +S+R+D + S K RS + LI
Sbjct: 156 RVSVTLREVSKDDWISNQEKYSQSF-VLLSSMRLDNVLSTVLKTPRSNALKLI 207
>gi|290890673|ref|ZP_06553743.1| hypothetical protein AWRIB429_1133 [Oenococcus oeni AWRIB429]
gi|419758702|ref|ZP_14285016.1| cell division protein [Oenococcus oeni AWRIB304]
gi|421195618|ref|ZP_15652823.1| cell division protein [Oenococcus oeni AWRIB568]
gi|421197730|ref|ZP_15654902.1| cell division protein [Oenococcus oeni AWRIB576]
gi|290479648|gb|EFD88302.1| hypothetical protein AWRIB429_1133 [Oenococcus oeni AWRIB429]
gi|399904532|gb|EJN91986.1| cell division protein [Oenococcus oeni AWRIB304]
gi|399974782|gb|EJO08865.1| cell division protein [Oenococcus oeni AWRIB576]
gi|399975448|gb|EJO09500.1| cell division protein [Oenococcus oeni AWRIB568]
Length = 256
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 95/209 (45%), Gaps = 16/209 (7%)
Query: 64 NFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLT---PPVLKESMMALEKLAD 120
NFD L D I K +L+ +A + FLT P ++ ++ L K
Sbjct: 3 NFDVNLNHYSDAEKIF-AKQVLDWFFQADEK------SFLTVFLNPQEQKILLELAKQIG 55
Query: 121 VKAVAQGGYPQAERCRLSVG-HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTG 179
GGY +AE R +G H E +D I + L + + H LGS+L G
Sbjct: 56 FSVRFGGGYQRAENKRALIGDHKE---NDFQI-SLLQLNYASHYVHLHHSTVLGSLLHHG 111
Query: 180 IAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKS 239
I+ ++IGD+I + + Q L+ LAD+++ ++++ + ++ +I + K
Sbjct: 112 ISYDRIGDVIHEND-NWQLLIDSSLADFVVENVKRAASKKITFEKISFEKILNPQSDEKE 170
Query: 240 FKTIEASLRVDALASAGFKLSRSKLVNLI 268
+ + +S R+D L S + SR+ +LI
Sbjct: 171 KEIVISSQRIDLLISQIYNFSRAHAKDLI 199
>gi|325846577|ref|ZP_08169492.1| S4 domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4]
gi|325481335|gb|EGC84376.1| S4 domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4]
Length = 255
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 95/208 (45%), Gaps = 26/208 (12%)
Query: 72 VGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQ 131
V DK+ +K + + ++ + + S FL P + + + K+ +++ V +
Sbjct: 10 VEDKSVKANIKKAISLLEKSFYTHKEVSSFFLNPFEI-SVLNDIAKVNNIEIVFLSCNDK 68
Query: 132 AERCRLSVGHPEALTSDPDIVAALSITG--NFGFQPCSHGDFLGSILGTGIAREKIGDII 189
+ER ++ + +P D + S F SH D LG++L G+ R IGDI
Sbjct: 69 SER-QIFIANPYT-----DYIEKSSYINVLEFKINNISHPDVLGALLNLGLDRNDIGDIY 122
Query: 190 LQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE----- 244
+ G+ +F+V+ + D++ +L K+ N VS L+++ S IE
Sbjct: 123 I-GDDKCEFVVLNKDKDFVKFNLTKIKNEKVS--------LDFKNDNILSISKIEYIVNK 173
Query: 245 ---ASLRVDALASAGFKLSRSKLVNLIR 269
+SLR+D L S LSRSK LI+
Sbjct: 174 GFISSLRLDNLVSEFVNLSRSKAQTLIK 201
>gi|310778916|ref|YP_003967249.1| RNA-binding S4 domain-containing protein [Ilyobacter polytropus DSM
2926]
gi|309748239|gb|ADO82901.1| RNA-binding S4 domain protein [Ilyobacter polytropus DSM 2926]
Length = 258
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 91/186 (48%), Gaps = 20/186 (10%)
Query: 98 LHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSV---GHPEALTSDPDIVAA 154
+H+ PP + ++ ++ ++ ++G ++E+ + + + E P A
Sbjct: 35 IHTKIFFPPEVWSTLENMKNSLGIEVESKGVKQESEKRVILIKPLAYGEYFEDYP--FAY 92
Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF-LVVPELADYLITSLE 213
I G F+ H FL +I+G GI RE +GD+I++ +G + ++ +L ++L +L+
Sbjct: 93 FEIRGGSKFKELEHRHFLAAIMGLGIKREMLGDLIVK--EGVCYGVIFRDLFNFLENNLK 150
Query: 214 KVGNVSVSCTR-----IPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+G + V + IP + E + +SLR+D++ +A + SRS+ LI
Sbjct: 151 VIGKIKVEVSETEEKNIPEMEFE-------EITYLVSSLRLDSIVAAITEKSRSQATELI 203
Query: 269 RYSSLA 274
R +++
Sbjct: 204 REGTVS 209
>gi|182418004|ref|ZP_02949310.1| S4 domain protein [Clostridium butyricum 5521]
gi|237667539|ref|ZP_04527523.1| RNA-binding S4 domain protein [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182378175|gb|EDT75710.1| S4 domain protein [Clostridium butyricum 5521]
gi|237655887|gb|EEP53443.1| RNA-binding S4 domain protein [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 254
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 103/224 (45%), Gaps = 29/224 (12%)
Query: 71 GVGDKNAIEEVKHILEMARRASSRR-EVLHSDFLTPPVLKESMMALEKL---ADVKAVAQ 126
G DKN EV ++ E + A + + + F TP + + EK + K +
Sbjct: 10 GDEDKN---EVLNLYEKYKLARDKEIPMFGNSFYTPNIWR----WFEKNFINSSCKVESN 62
Query: 127 GGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 186
G + +ER +S + TS P + L I F +H DFLG IL GI R KIG
Sbjct: 63 GVFEDSERRMISFNNVYN-TSFP--MKLLKIENTSKFNELTHKDFLGGILALGIERNKIG 119
Query: 187 DIILQGEKGAQFLVVP---ELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFK-- 241
D++++ VP ++ +LI +++K+G S +I +L +Y+ +FK
Sbjct: 120 DLLVKD----NVCYVPIHEDIESFLIFNIDKIGK---SSCKIEILE-KYDSLPQFNFKEE 171
Query: 242 -TIEASLRVDALASAGFKLSRSKLVNLIRYSS-LASLVQISAKA 283
+ +SLR+D + S +SR K +I L V+I K+
Sbjct: 172 VILVSSLRIDGIVSKLANVSRGKAQMMIDQGKVLVDYVKIRDKS 215
>gi|295706356|ref|YP_003599431.1| RNA binding protein [Bacillus megaterium DSM 319]
gi|294804015|gb|ADF41081.1| RNA binding protein [Bacillus megaterium DSM 319]
Length = 257
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 10/179 (5%)
Query: 94 RREVLH------SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 147
+ +VLH +DFL P + + +V+ GG P AER R ++ +P+
Sbjct: 22 KEDVLHQYSPKLTDFLDPREQQIVTAIVGTEGEVQVSFDGGQPFAERKR-ALLYPDYYVP 80
Query: 148 DPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELA 205
+ + N+ F H LGS + G+ R K GDI++ G+ Q +V E++
Sbjct: 81 ESEDFQLHMYELNYPKKFVTIEHPQVLGSAMSLGLRRSKFGDILVAGD-DIQLVVAEEIS 139
Query: 206 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKL 264
Y+ +L +G VS + I L +S+R+D L S LSR K+
Sbjct: 140 SYIEMNLTSIGKAKVSLSSIQREQLHVVKEELVEHVYTVSSMRLDVLLSTIHNLSRQKV 198
>gi|424780486|ref|ZP_18207359.1| hypothetical protein C683_0666 [Catellicoccus marimammalium
M35/04/3]
gi|422842888|gb|EKU27335.1| hypothetical protein C683_0666 [Catellicoccus marimammalium
M35/04/3]
Length = 261
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 17/169 (10%)
Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQ---AERCRLSVGHPEALTSDPDIVAALSIT 158
FL P +E + +E LA + V+ Y Q +E+ R+ + +PE + + I
Sbjct: 39 FLNP---REQYL-VENLAHQRGVSVQAYSQFRHSEQKRVLL-YPEYFVPEEEDFETQLIE 93
Query: 159 GNFG--FQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
++ F H + LG++LG GI RE+IGDI L +K Q V L YL ++ K+
Sbjct: 94 IHYAQKFVELHHREVLGTLLGQGIKREQIGDIHL-NDKQIQVEVSQNLTSYLCMNVTKMS 152
Query: 217 NVSVSCTRIPLLALEYE---PPRTKSFKTIEASLRVDALASAGFKLSRS 262
N SV R+ +A E R+K+ S R+D + + + +SR
Sbjct: 153 NQSV---RLEPIAKEKRIDAEERSKTENATITSFRLDNIVATVYNISRQ 198
>gi|363896839|ref|ZP_09323388.1| hypothetical protein HMPREF9624_02132 [Oribacterium sp. ACB7]
gi|361960404|gb|EHL13653.1| hypothetical protein HMPREF9624_02132 [Oribacterium sp. ACB7]
Length = 254
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 3/98 (3%)
Query: 164 QPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCT 223
+ SH D LG+++ GI+RE++GDI+ Q E + ++ ++ DY+ +L + + +V C
Sbjct: 99 EKLSHRDVLGAVMNLGISREQVGDILFQ-EDASYLFLLRKMKDYVAENLSTIRHTAVQCK 157
Query: 224 RIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSR 261
+ + E R + S R+DA+ SA F LSR
Sbjct: 158 EV--VETEGMERREVEERIFVPSERLDAVVSAVFHLSR 193
>gi|205373286|ref|ZP_03226090.1| RNA-binding S4 domain-containing protein [Bacillus coahuilensis
m4-4]
Length = 257
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 4/166 (2%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVAALSI 157
+DFL P + + ++V +G P AER C + + + D D+ A L +
Sbjct: 34 TDFLHPRERQIVEAIIGSQSEVLVSFEGLLPDAERKRCLIYPDYFQPKIEDFDL-ALLEV 92
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
F H LG+++ GI REK GDI+L ++ Q + EL Y+ +VG
Sbjct: 93 EYPRKFITLEHRQILGALMSLGIRREKYGDILLSDDR-IQLIAANELKSYITLQFTEVGK 151
Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 263
+ + ++T +SLR+D + S K+SR+K
Sbjct: 152 SQIELIEKNRKEIIQPNEEWSEYQTTVSSLRLDVMLSTLLKISRNK 197
>gi|317056648|ref|YP_004105115.1| RNA-binding S4 domain-containing protein [Ruminococcus albus 7]
gi|315448917|gb|ADU22481.1| RNA-binding S4 domain protein [Ruminococcus albus 7]
Length = 259
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 74/154 (48%), Gaps = 12/154 (7%)
Query: 127 GGYPQAERCRLSVGHPEALTSDPDIVAAL---SITGNFGFQ-PCSHGDFLGSILGTGIAR 182
GGY +AER L V P + DI+ + S+T F + H DFLGS++ GI R
Sbjct: 66 GGYNEAERKMLCVYPPYS----DDIINSFPMRSLTFRFRREDKLDHRDFLGSLMALGITR 121
Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 242
+GDI++ + F+ L D L + K+G V V A + P +
Sbjct: 122 GCVGDILVGIGSASVFVKDTVLLDVL--GVTKIGRVGVKADE-GFDAQNIKEPEFREITG 178
Query: 243 IEASLRVDALASAGFKLSRSKLVNLIRYSSLASL 276
ASLR+D++ S ++SR K LI+ S LA +
Sbjct: 179 TVASLRLDSVVSLALRMSREKASALIK-SGLAEV 211
>gi|406587577|ref|ZP_11062446.1| hypothetical protein GMD1S_06737 [Streptococcus sp. GMD1S]
gi|404472943|gb|EKA17325.1| hypothetical protein GMD1S_06737 [Streptococcus sp. GMD1S]
Length = 263
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 2/134 (1%)
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLIT 210
+A L I F+ SHG LG+I+ GI R+ GDI++ EK AQ V +
Sbjct: 90 MALLEICYPSKFEQLSHGKILGTIINQLGIDRKLFGDILVD-EKRAQIFVNRDFIPLFQD 148
Query: 211 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRY 270
+ K+G + VS P + + + +S R+DAL S+G KLSR++ LI
Sbjct: 149 GIRKIGRLPVSLEERPFTDRILSKIDYREREILVSSFRLDALLSSGLKLSRNQASQLIEK 208
Query: 271 SSLASLVQISAKAS 284
S+ + K+
Sbjct: 209 KSVQVNYHVVEKSD 222
>gi|421144308|ref|ZP_15604223.1| RNA binding protein [Fusobacterium nucleatum subsp. fusiforme ATCC
51190]
gi|395489258|gb|EJG10098.1| RNA binding protein [Fusobacterium nucleatum subsp. fusiforme ATCC
51190]
Length = 241
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 104/214 (48%), Gaps = 23/214 (10%)
Query: 78 IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
+E++++ +++A + + V++S+ P S + K + +K +G E+ L
Sbjct: 5 LEKIENYIKLAEKTDT---VIYSNQFFPV----SQLNNLKYSGMKFSFKGLNEDCEKKLL 57
Query: 138 SVGHPEALTSD----PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGE 193
+V +PE T D P V I F H +LG+IL GI RE +GD+I++
Sbjct: 58 AV-YPEYFTEDYLYFP--VKYFKIIKKSKFINLEHKHYLGNILSLGIKREILGDLIVKNN 114
Query: 194 KGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVD 250
+ +++ + D+L +L ++ + + T I E + P+ + FK + +SLR+D
Sbjct: 115 ECYG-IILENMFDFLKENLLRINSSPIEITEIT----ERDVPQNE-FKELNIRLSSLRLD 168
Query: 251 ALASAGFKLSRSKLVNLIRYSSLASLVQISAKAS 284
+L S LSR+ VN I ++ +I + S
Sbjct: 169 SLVSELTNLSRALSVNYIDLGNVQVNYEIQREKS 202
>gi|358054991|ref|ZP_09147519.1| hypothetical protein SS7213T_11255 [Staphylococcus simiae CCM 7213]
gi|357256725|gb|EHJ07057.1| hypothetical protein SS7213T_11255 [Staphylococcus simiae CCM 7213]
Length = 259
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 5/143 (3%)
Query: 128 GYPQAERCRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKI 185
G P AER R + PE T+ D + I N+ F H LG+++ GI R+++
Sbjct: 64 GGPNAERQRAIIA-PEYYTATDDDFDLVLIQVNYPDKFVTLKHQHILGTLMSLGIDRQQV 122
Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
GDII+ GE+ QF++ L +++ L+++ +V IP + K +
Sbjct: 123 GDIIV-GEQ-IQFVLTSRLQSFIMLELQRIKGATVKLNTIPFSDMIQSKEDWKLSSATVS 180
Query: 246 SLRVDALASAGFKLSRSKLVNLI 268
SLR+D + SR+ LI
Sbjct: 181 SLRLDVILKEMIHKSRTIAKQLI 203
>gi|449953891|ref|ZP_21809141.1| hypothetical protein SMU36_00920 [Streptococcus mutans 4VF1]
gi|449171352|gb|EMB74016.1| hypothetical protein SMU36_00920 [Streptococcus mutans 4VF1]
Length = 262
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 79/175 (45%), Gaps = 12/175 (6%)
Query: 100 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 154
++FL P V+K S++ KL + + +E RL + + E +D I +
Sbjct: 37 TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91
Query: 155 LSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
L I N F +H LG+++ GI R +GDII+Q E AQ + + YL +
Sbjct: 92 LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150
Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+G +V IP + + +S+R+D + + KLSR + LI
Sbjct: 151 KIGKAAVVFEEIPFERQITSQSHIREMNVLVSSMRLDKIIATVLKLSRRQANQLI 205
>gi|340355069|ref|ZP_08677762.1| S4 domain-containing protein YlmH [Sporosarcina newyorkensis 2681]
gi|339622750|gb|EGQ27264.1| S4 domain-containing protein YlmH [Sporosarcina newyorkensis 2681]
Length = 261
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 96/178 (53%), Gaps = 16/178 (8%)
Query: 100 SDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAAL 155
++FL P + ES++ + +D+ ++GG+P AER R+ + +P+ T S+ D ++
Sbjct: 38 TEFLDPRQRFITESIV---RNSDLVIASEGGFPDAERKRVLI-YPDYYTPSEDDFQISFY 93
Query: 156 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 215
+ F H LGS+L GI R + GDI + E+ QF V E+++Y+ + +V
Sbjct: 94 QVQYPQKFVNMKHSQLLGSLLSLGIDRSRFGDIRI-TEEAVQFAVTAEVSEYIHVNFTQV 152
Query: 216 GNVSVSCTRIPLL----ALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIR 269
G V VS P+L ++ + T+ I +SLR+D + ++ K SR+K +LI+
Sbjct: 153 GKVKVSIQ--PVLNADDVIDVQEEWTEEMHII-SSLRLDTVVASLAKCSRAKASSLIK 207
>gi|172057962|ref|YP_001814422.1| RNA-binding S4 domain-containing protein [Exiguobacterium sibiricum
255-15]
gi|171990483|gb|ACB61405.1| RNA-binding S4 domain protein [Exiguobacterium sibiricum 255-15]
Length = 257
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 17/178 (9%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVA-QGGYPQAERCRLSVG--HPEALTSDPDIVAALS 156
+DFL P +E + E + A+ +GG+ AER R + + E +D DI A
Sbjct: 34 TDFLDP---REQQITRELVGTKCALFFEGGFEGAERQRALIAPDYYELDANDFDI-AIYR 89
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
I F SH G++L G+ R K GD+++Q ++ QF V E+A Y+ ++++ G
Sbjct: 90 IHYPTKFVELSHRQVTGTLLNVGLKRGKFGDVVIQ-DQLVQFAVAKEVASYIEANVDRAG 148
Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIE-----ASLRVDALASAGFKLSRSKLVNLIR 269
+ R+ L+ E E + K + E +SLR D + S SR K +LI+
Sbjct: 149 KTKI---RLSLVDSE-EQLKIKDQEWQEELGFVSSLRFDTVVSEILGFSRQKAQSLIK 202
>gi|384045140|ref|YP_005493157.1| RNA-binding S4 domain-containing protein [Bacillus megaterium
WSH-002]
gi|345442831|gb|AEN87848.1| RNA-binding S4 domain protein [Bacillus megaterium WSH-002]
Length = 257
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 77/179 (43%), Gaps = 10/179 (5%)
Query: 94 RREVLH------SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 147
+ +VLH +DFL P + + +V+ GG P AER R ++ +P+
Sbjct: 22 KEDVLHQYSPKLTDFLDPREQQIVTAIVGTEGEVQVSFDGGQPFAERKR-ALLYPDYYVP 80
Query: 148 DPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELA 205
+ N+ F H LGS + G+ R K GDI++ G+ Q +V E++
Sbjct: 81 QSEDFQLCMYELNYPKKFVTIEHPQVLGSAMSLGLRRSKFGDILVAGD-DIQLVVAEEIS 139
Query: 206 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKL 264
Y+ +L +G VS + I L +S+R+D L S LSR K+
Sbjct: 140 SYIEMNLTSIGKAKVSLSSIQREQLHVVKEELIEHVYTVSSMRLDVLLSTIHNLSRQKV 198
>gi|312863735|ref|ZP_07723973.1| S4 domain protein [Streptococcus vestibularis F0396]
gi|311101271|gb|EFQ59476.1| S4 domain protein [Streptococcus vestibularis F0396]
Length = 230
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 81/173 (46%), Gaps = 7/173 (4%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 157
+DFL P + + + L ++K + E R+ + P+ D D + L I
Sbjct: 2 TDFLNPREI-QIVKDLANYYNLKFFVSSTFDNEEYGRVILA-PDYYELDEDDFEIKRLEI 59
Query: 158 TGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
+ F H LG+++ G+ R+ GDIIL E QF + LA Y I S+ K+G
Sbjct: 60 SYARQFNKLIHPKILGALINQLGLERQVFGDIILDEEGRVQFNIASHLASYAIMSITKIG 119
Query: 217 NVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
VSV+ + + ++SF + +S+R+D + + K+SRS + LI
Sbjct: 120 KVSVTLREASKDDWISNKEKYSQSF-VLLSSMRLDNVLATVLKISRSNALKLI 171
>gi|160945087|ref|ZP_02092313.1| hypothetical protein FAEPRAM212_02606 [Faecalibacterium prausnitzii
M21/2]
gi|158442818|gb|EDP19823.1| S4 domain protein [Faecalibacterium prausnitzii M21/2]
Length = 272
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 91/194 (46%), Gaps = 8/194 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLS 138
++HI ++A A SR +S FL+ + AL + A V+ + GG+P+AER L
Sbjct: 27 MRHIEDLADAAFSRGIARYSAFLSDREQDLARAALGR-AGVRDGWRFDGGWPEAERRVLC 85
Query: 139 VGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEK-GAQ 197
+ + P L G +H D+LGS++G + RE +GDI+L + G
Sbjct: 86 LEPEYSYGECPVRCVQLQCRALPGAALPAHKDYLGSLMGLALKREALGDILLPADAPGTA 145
Query: 198 FLVVPELADYLIT-SLEKVGNVSVSCTRI--PLLALEYEPPRTKSFKTIEASLRVDALAS 254
++ E A LI L + G VS TR+ P + P + +SLR+DA+ S
Sbjct: 146 YVFALEPAAKLICRELCQAGRTEVS-TRLLEPEEIPAFPAPERQLLTATVSSLRLDAVLS 204
Query: 255 AGFKLSRSKLVNLI 268
A +SR LI
Sbjct: 205 AMLHVSRGTAAELI 218
>gi|169824335|ref|YP_001691946.1| putative RNA binding protein [Finegoldia magna ATCC 29328]
gi|167831140|dbj|BAG08056.1| putative RNA binding protein [Finegoldia magna ATCC 29328]
Length = 258
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 74/171 (43%), Gaps = 9/171 (5%)
Query: 95 REVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG----HPEALTSDPD 150
+ + +DF+ P ++ ++ L DV +A E + + + E + D
Sbjct: 31 KTIYSTDFMNPKEIEYAISILNTETDVGYMATNCPKNCENSIIIMWDRYCYSEEYINMFD 90
Query: 151 IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLIT 210
+ L I + Q SH D LG++L GI REKIGDI K + +L
Sbjct: 91 YIGLLEIQTD---QEISHRDILGAVLNLGINREKIGDIFTHN-KRFYICATNTMIKFLNL 146
Query: 211 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSR 261
+L K+ ++S T I +E + + K F I S R+D L S +SR
Sbjct: 147 NLTKIKKFNIS-TSIVEKNIEKDEEKYKPFTGIINSERLDCLVSEMANISR 196
>gi|404482191|ref|ZP_11017418.1| hypothetical protein HMPREF1135_00478 [Clostridiales bacterium
OBRC5-5]
gi|404344352|gb|EJZ70709.1| hypothetical protein HMPREF1135_00478 [Clostridiales bacterium
OBRC5-5]
Length = 249
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 93/191 (48%), Gaps = 19/191 (9%)
Query: 85 LEMARRASSRREVLHSDFLT--PPVLKESMMALEKLADVKAVAQGGYPQAER---CRLSV 139
L++AR A + V +S FL + E++ + L +++ V GGY +AER C
Sbjct: 13 LDLARNAYFKNIVTYSMFLNLNEQAIFETIQ--KDLPNIRYVMFGGYSEAERKIVCFYCD 70
Query: 140 GHPEALTSDPDIVAALSIT-GNFGF-QPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
PE D++ + ++ N F +H DFLG+++ GI R +GDI + + A
Sbjct: 71 NIPEF-----DMLEYIKVSPVNKKFADELTHRDFLGALMNLGIERRMVGDICI-ADNTAH 124
Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA-SLRVDALASAG 256
+ +++ +I+ L V + V R A E + +K I S R+D++ +
Sbjct: 125 IITFKSMSETIISELTTVKHTKVVLERES--ADELKAVNRVEYKKINIPSERLDSIIGSI 182
Query: 257 FKLSRSKLVNL 267
+ +SRSK VNL
Sbjct: 183 YNISRSK-VNL 192
>gi|418312632|ref|ZP_12924141.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21334]
gi|365238277|gb|EHM79114.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21334]
Length = 259
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 6/151 (3%)
Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
D+ GG P AER R +S + E SD ++ + I F H LG+++
Sbjct: 57 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFEL-TLMEIDYPEKFVTLKHQHILGTLMS 114
Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ + +
Sbjct: 115 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNEKW 172
Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+ +SLR+D + + SR+ LI
Sbjct: 173 KNESATVSSLRLDVVIKEMIRKSRTIAKQLI 203
>gi|317131685|ref|YP_004090999.1| RNA-binding S4 domain-containing protein [Ethanoligenens harbinense
YUAN-3]
gi|315469664|gb|ADU26268.1| RNA-binding S4 domain protein [Ethanoligenens harbinense YUAN-3]
Length = 248
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 10/150 (6%)
Query: 117 KLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSIL 176
K AD + GGY AER L V P+ D ++ + +H DFLG++L
Sbjct: 46 KHADASFLLWGGYADAERRMLGV-FPQEEVPDGAAFPITAVQIIWKGAELNHRDFLGALL 104
Query: 177 GTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPR 236
G+ REK+GD++++ FL +A ++ ++L +VG + VSC E + R
Sbjct: 105 SLGLKREKVGDLVVRSNDCVAFL-ENAVAAFVRSNLSRVGRIGVSCE-----PYEGDVRR 158
Query: 237 TKSFKTIE---ASLRVDALASAGFKLSRSK 263
F I AS R+D + +A SR++
Sbjct: 159 EAHFAEIGGTVASERLDCVVAALTGCSRTQ 188
>gi|169827025|ref|YP_001697183.1| hypothetical protein Bsph_1449 [Lysinibacillus sphaericus C3-41]
gi|168991513|gb|ACA39053.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
Length = 262
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 86/193 (44%), Gaps = 9/193 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
++ ++ R R +DFL P + + + + G + +AER R+ +
Sbjct: 16 IEQVISWQREVEDRYAPKLTDFLDPRQRFIVTSIIGQDDSMNTLCAGLFNEAERQRMLIY 75
Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFL 199
++ D + A ++ F H D LG++L G+ R K GDI + + QF+
Sbjct: 76 PAYYEPTEKDFQLTAFTLQYPVKFVQLRHPDVLGALLSLGLNRSKFGDIRV-NDHQIQFV 134
Query: 200 VVPELADYLITSLEKVGNVSVSCTRI----PLLALEYEPPRTKSFKTIEASLRVDALASA 255
V E+A+Y+ L +G V V + PLL E E +S+ S+R+D + +
Sbjct: 135 VAQEVAEYVRLHLTGIGKVKVHVESLKEQEPLLINE-EEWLEESYTV--TSMRLDVIIAT 191
Query: 256 GFKLSRSKLVNLI 268
K+SR K LI
Sbjct: 192 VLKVSRQKAQALI 204
>gi|256842891|ref|ZP_05548379.1| cell division protein [Lactobacillus crispatus 125-2-CHN]
gi|262045857|ref|ZP_06018821.1| cell division protein [Lactobacillus crispatus MV-3A-US]
gi|293381725|ref|ZP_06627706.1| S4 domain protein [Lactobacillus crispatus 214-1]
gi|312977591|ref|ZP_07789338.1| cell-division protein [Lactobacillus crispatus CTV-05]
gi|423317800|ref|ZP_17295697.1| hypothetical protein HMPREF9250_01405 [Lactobacillus crispatus
FB049-03]
gi|423321137|ref|ZP_17299009.1| hypothetical protein HMPREF9249_01009 [Lactobacillus crispatus
FB077-07]
gi|256614311|gb|EEU19512.1| cell division protein [Lactobacillus crispatus 125-2-CHN]
gi|260573816|gb|EEX30372.1| cell division protein [Lactobacillus crispatus MV-3A-US]
gi|290921772|gb|EFD98793.1| S4 domain protein [Lactobacillus crispatus 214-1]
gi|310895330|gb|EFQ44397.1| cell-division protein [Lactobacillus crispatus CTV-05]
gi|405596460|gb|EKB69796.1| hypothetical protein HMPREF9249_01009 [Lactobacillus crispatus
FB077-07]
gi|405597736|gb|EKB70987.1| hypothetical protein HMPREF9250_01405 [Lactobacillus crispatus
FB049-03]
Length = 266
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 10/187 (5%)
Query: 94 RREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD--I 151
+ E + +DFL P K +++ D GGYP AE+ R+ + E L P
Sbjct: 34 KHEPILTDFLDPG--KRAILRTIVGNDAFVQEYGGYPNAEKKRVYLSE-EWLNLRPSDYQ 90
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
+ I F +H LG++ +GI GDII + QF E+ ++
Sbjct: 91 IQPYEIEYPQKFTKINHSVILGTLANSGIDTSIFGDIINDNQGKWQFFTKKEMTEFFEEQ 150
Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFK--TIEASLRVDALASAGFKLSRSKLVNLIR 269
++++G V P+ E P S + I AS+R+DA+ S + SR ++ +I
Sbjct: 151 IDRIGRAKVKLR--PISFKEVLVPEDDSIEKTKIVASMRIDAVLSGISRQSRGQIQKMIN 208
Query: 270 YSSLASL 276
S L L
Sbjct: 209 -SQLVKL 214
>gi|257425245|ref|ZP_05601670.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
subsp. aureus 55/2053]
gi|282908483|ref|ZP_06316313.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|257271702|gb|EEV03840.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
subsp. aureus 55/2053]
gi|282327545|gb|EFB57828.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
WW2703/97]
Length = 218
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 6/156 (3%)
Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
D+ GG P AER R +S + E SD D+ + I F H LG+++
Sbjct: 66 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFDL-TLMEIDYPEKFVTLKHQHILGTLMS 123
Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 124 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181
Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSL 273
K +SLR+D + + SR+ LI + L
Sbjct: 182 KIESATVSSLRLDVVIKEMIRKSRTIAKQLIEKNVL 217
>gi|160914284|ref|ZP_02076505.1| hypothetical protein EUBDOL_00294 [Eubacterium dolichum DSM 3991]
gi|158433911|gb|EDP12200.1| S4 domain protein [Eubacterium dolichum DSM 3991]
Length = 253
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 92/195 (47%), Gaps = 17/195 (8%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCR 136
E VK I + + R+ ++ + F +P + S+ + + GGY AER R
Sbjct: 16 EFVKRIYDYIDQCEVRKRIIVTPFFSPDQSAITRSICGKQIMYK----EDGGYKGAERVR 71
Query: 137 LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
+ P ++ S++ FG SH D LG+++ G+ RE GDI+++ + A
Sbjct: 72 FAFLPFTTNYQFPTVILKASVSATFGM--LSHRDVLGALMNLGLRREMSGDILVK--RDA 127
Query: 197 QFLVV-PELADYLITSLEKVGNVSVSCTRIP--LLALEYEPPRTKSFKTIEASLRVDALA 253
+LVV ++ ++++ +L K+ V R L++ P + K I +S+R+D +
Sbjct: 128 VYLVVDKDIENFVVCNLTKIKRQHVHFKRYEGSLVSNTSIPYQHK----IVSSMRLDTIV 183
Query: 254 SAGFKLSRSKLVNLI 268
+ +SR K +I
Sbjct: 184 ACLANVSRGKAQEMI 198
>gi|407796627|ref|ZP_11143580.1| hypothetical protein MJ3_06973 [Salimicrobium sp. MJ3]
gi|407019143|gb|EKE31862.1| hypothetical protein MJ3_06973 [Salimicrobium sp. MJ3]
Length = 255
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 75/172 (43%), Gaps = 6/172 (3%)
Query: 100 SDFLTPPVLKESMMALEKLADVK-AVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSI 157
+DFL P +E +A L + V G ER R+ + L + D + L
Sbjct: 34 TDFLNP---RERQIATSLLRNTDLQVEFSGEDDEERRRMIIAPEYELIEEEDFQLTLLEA 90
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
+ F H D LG+ + GI REK+GD+I++ + + E++D++ L+++
Sbjct: 91 SYPAKFVSLEHRDVLGAFMSLGIKREKLGDLIVK-DGFIHIIAAAEISDFIKMQLQQINK 149
Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIR 269
SV I + + K +SLR+D + + + R K V I+
Sbjct: 150 ASVRWKEIEMGSRMTSEEEWKESSATVSSLRIDVVLKEIYNMPRKKSVMYIK 201
>gi|418931256|ref|ZP_13485098.1| ylmH [Staphylococcus aureus subsp. aureus CIG1750]
gi|377715089|gb|EHT39286.1| ylmH [Staphylococcus aureus subsp. aureus CIG1750]
Length = 209
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 6/156 (3%)
Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
D+ GG P AER R +S + E SD ++ + I F H LG+++
Sbjct: 57 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFEL-TLMEIEYPEKFVTLKHQHILGTLMS 114
Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 115 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 172
Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSL 273
K+ +SLR+D + + SR+ LI + L
Sbjct: 173 KNESATVSSLRLDVVIKEMIRKSRTIAKQLIEKNVL 208
>gi|358067456|ref|ZP_09153935.1| hypothetical protein HMPREF9333_00816 [Johnsonella ignava ATCC
51276]
gi|356694372|gb|EHI56034.1| hypothetical protein HMPREF9333_00816 [Johnsonella ignava ATCC
51276]
Length = 261
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 95/215 (44%), Gaps = 27/215 (12%)
Query: 72 VGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKES--MMALEKLADVKAVAQGGY 129
V DK+AI + I E+A RA R H+ FL L E +++ L V GGY
Sbjct: 2 VIDKDAIFLSRRIKELADRALKRDVFTHTSFLN---LNEQAVFFSIKDLPKVNYKLIGGY 58
Query: 130 PQAERCRLSVGHPEALTSDPDIVAALSITGN-FGF---QPC--------SHGDFLGSILG 177
AER ++ P + D I F + +P +H D+LG+++
Sbjct: 59 EAAER-KVVCFFPVVFEFENDFEQLSDINQKIFDYIYIKPVNEKFSDRLTHRDYLGALMN 117
Query: 178 TGIAREKIGDIILQGEKGAQFLVV-PELADYLITSLEKVGNVSVSCTRIPLLALEYEPPR 236
GI R GDI++ G+ ++VV ++ + +LE V V+ + +
Sbjct: 118 LGIDRCMTGDIVMSC--GSAYVVVLKRISRIIADNLETVKKTKVAVSIEN--CFDTAISD 173
Query: 237 TKSFKTIEA-SLRVDALASAGFKLSRSKLVNLIRY 270
T K I S+R+DAL SA F LSR N +RY
Sbjct: 174 TGYIKRINVISIRIDALISAVFNLSRG---NAVRY 205
>gi|150016467|ref|YP_001308721.1| RNA-binding S4 domain-containing protein [Clostridium beijerinckii
NCIMB 8052]
gi|149902932|gb|ABR33765.1| RNA-binding S4 domain protein [Clostridium beijerinckii NCIMB 8052]
Length = 254
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 85/201 (42%), Gaps = 25/201 (12%)
Query: 97 VLHSDFLTPPVLKESMMALEKL---ADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVA 153
V F TP + M EK D+K + G +ER +S + + P +
Sbjct: 34 VFGKSFYTPNI----WMWFEKNLSSNDLKIESNGLLDDSERRMVSFNN---IYKSPFPMK 86
Query: 154 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
+ I F +H DFLG IL GI R KIGD+++ V E+ D++I +L
Sbjct: 87 LIKIESTSKFSNLTHRDFLGGILSLGIERNKIGDLLVDNNT-CYVPVHEEVEDFIIYNLN 145
Query: 214 KVGNVSVSCTRI------PLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNL 267
++ V + + P + E E + +SLR+D + S +SRSK +
Sbjct: 146 RISKVICNVKVVDDFGFLPKVNFEEEV-------VLVSSLRIDGIVSKIINISRSKAQAM 198
Query: 268 IRYSS-LASLVQISAKASAIR 287
I L V+I K+ ++
Sbjct: 199 IEQGRVLIDYVKIKDKSYELK 219
>gi|456012727|gb|EMF46415.1| hypothetical protein B481_2169 [Planococcus halocryophilus Or1]
Length = 261
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 80/175 (45%), Gaps = 12/175 (6%)
Query: 100 SDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAAL 155
+DFL P + ES+M DV + G + AER R L + E D +I
Sbjct: 35 TDFLDPRQRFIVESVMGS---TDVNMMTSGIFKDAERQRVLLYPSYFEPQQEDFNI-TVF 90
Query: 156 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 215
+ F H D LGSI+ G+ R K GDI + E+ Q V+ E++ YL ++
Sbjct: 91 ELKYPSKFVNLRHPDILGSIMSLGLDRSKFGDIRIDNER-VQLAVMNEISSYLQSNFVSA 149
Query: 216 GNVSVSCTRIPLLA--LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
V V + L +E T+ T+ +S+R+D + S+ + +SR K LI
Sbjct: 150 AKVKVQLNEVTDLTEMIETSEEWTEESYTV-SSMRLDTVMSSVYNISRQKAAALI 203
>gi|386728870|ref|YP_006195253.1| RNA binding protein [Staphylococcus aureus subsp. aureus 71193]
gi|387602464|ref|YP_005733985.1| RNA-binding S4 domain protein [Staphylococcus aureus subsp. aureus
ST398]
gi|404478529|ref|YP_006709959.1| hypothetical protein C248_1220 [Staphylococcus aureus 08BA02176]
gi|418309681|ref|ZP_12921232.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21331]
gi|418978567|ref|ZP_13526367.1| RNA binding protein [Staphylococcus aureus subsp. aureus DR10]
gi|283470402|emb|CAQ49613.1| RNA-binding S4 domain protein [Staphylococcus aureus subsp. aureus
ST398]
gi|365237804|gb|EHM78643.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21331]
gi|379993391|gb|EIA14837.1| RNA binding protein [Staphylococcus aureus subsp. aureus DR10]
gi|384230163|gb|AFH69410.1| RNA binding protein [Staphylococcus aureus subsp. aureus 71193]
gi|404440018|gb|AFR73211.1| hypothetical protein C248_1220 [Staphylococcus aureus 08BA02176]
Length = 268
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 6/151 (3%)
Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
D+ GG P AER R +S + E SD D+ + I F H LG+++
Sbjct: 66 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFDL-TLMEIDYPEKFVTLKHQHILGTLMS 123
Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 124 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181
Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K +SLR+D + + SR+ LI
Sbjct: 182 KIESATVSSLRLDVVIKEMIRKSRTIAKQLI 212
>gi|418993807|ref|ZP_13541444.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG290]
gi|377746966|gb|EHT70936.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG290]
Length = 259
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 6/151 (3%)
Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
D+ GG P AER R +S + E SD D+ + I F H LG+++
Sbjct: 57 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFDL-TLMEIDYPEKFVTLKHQHILGTLMS 114
Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 115 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 172
Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K +SLR+D + + SR+ LI
Sbjct: 173 KIESATVSSLRLDVVIKEMIRKSRTIAKQLI 203
>gi|418561881|ref|ZP_13126356.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21262]
gi|371975157|gb|EHO92457.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21262]
Length = 268
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 6/151 (3%)
Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
D+ GG P AER R +S + E SD D+ + I F H LG+++
Sbjct: 66 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFDL-TLMEIDYPEKFVTLKHQHILGTLMS 123
Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 124 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181
Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K +SLR+D + + SR+ LI
Sbjct: 182 KIESATVSSLRLDVVIKEMIRKSRTIAKQLI 212
>gi|282916441|ref|ZP_06324203.1| hypothetical protein SATG_01276 [Staphylococcus aureus subsp.
aureus D139]
gi|283770253|ref|ZP_06343145.1| YlmH [Staphylococcus aureus subsp. aureus H19]
gi|384547433|ref|YP_005736686.1| hypothetical protein SAOV_1192 [Staphylococcus aureus subsp. aureus
ED133]
gi|384549947|ref|YP_005739199.1| S4 RNA binding domain protein [Staphylococcus aureus subsp. aureus
JKD6159]
gi|387780301|ref|YP_005755099.1| hypothetical protein SARLGA251_11020 [Staphylococcus aureus subsp.
aureus LGA251]
gi|417904139|ref|ZP_12547969.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21269]
gi|282319881|gb|EFB50229.1| hypothetical protein SATG_01276 [Staphylococcus aureus subsp.
aureus D139]
gi|283460400|gb|EFC07490.1| YlmH [Staphylococcus aureus subsp. aureus H19]
gi|298694482|gb|ADI97704.1| hypothetical protein SAOV_1192 [Staphylococcus aureus subsp. aureus
ED133]
gi|302332796|gb|ADL22989.1| S4 RNA binding domain protein [Staphylococcus aureus subsp. aureus
JKD6159]
gi|341847962|gb|EGS89131.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21269]
gi|344177403|emb|CCC87870.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
LGA251]
Length = 268
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 6/151 (3%)
Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
D+ GG P AER R +S + E SD D+ + I F H LG+++
Sbjct: 66 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFDL-TLMEIDYPEKFVTLKHQHILGTLMS 123
Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 124 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181
Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K +SLR+D + + SR+ LI
Sbjct: 182 KIESATVSSLRLDVVIKEMIRKSRTIAKQLI 212
>gi|49483354|ref|YP_040578.1| hypothetical protein SAR1167 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257427905|ref|ZP_05604303.1| YlmH [Staphylococcus aureus subsp. aureus 65-1322]
gi|257430538|ref|ZP_05606920.1| YlmH protein [Staphylococcus aureus subsp. aureus 68-397]
gi|257433299|ref|ZP_05609657.1| YlmH protein [Staphylococcus aureus subsp. aureus E1410]
gi|257436141|ref|ZP_05612188.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
M876]
gi|282903743|ref|ZP_06311631.1| YlmH protein [Staphylococcus aureus subsp. aureus C160]
gi|282905507|ref|ZP_06313362.1| hypothetical protein SDAG_01131 [Staphylococcus aureus subsp.
aureus Btn1260]
gi|282913967|ref|ZP_06321754.1| YlmH protein [Staphylococcus aureus subsp. aureus M899]
gi|282918889|ref|ZP_06326624.1| hypothetical protein SASG_00195 [Staphylococcus aureus subsp.
aureus C427]
gi|282924012|ref|ZP_06331688.1| hypothetical protein SARG_01553 [Staphylococcus aureus subsp.
aureus C101]
gi|293501000|ref|ZP_06666851.1| hypothetical protein SCAG_01530 [Staphylococcus aureus subsp.
aureus 58-424]
gi|293509958|ref|ZP_06668667.1| hypothetical protein SAZG_01859 [Staphylococcus aureus subsp.
aureus M809]
gi|293526547|ref|ZP_06671232.1| YlmH protein [Staphylococcus aureus subsp. aureus M1015]
gi|297591365|ref|ZP_06950003.1| S4 domain-containing protein YlmH [Staphylococcus aureus subsp.
aureus MN8]
gi|384867927|ref|YP_005748123.1| S4 domain-containing protein YlmH [Staphylococcus aureus subsp.
aureus TCH60]
gi|417888860|ref|ZP_12532962.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21195]
gi|418283010|ref|ZP_12895767.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21202]
gi|418582025|ref|ZP_13146103.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1605]
gi|418897728|ref|ZP_13451798.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIGC341D]
gi|418900598|ref|ZP_13454655.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1214]
gi|4009496|gb|AAC95463.1| YlmH [Staphylococcus aureus]
gi|49241483|emb|CAG40169.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257274746|gb|EEV06233.1| YlmH [Staphylococcus aureus subsp. aureus 65-1322]
gi|257278666|gb|EEV09285.1| YlmH protein [Staphylococcus aureus subsp. aureus 68-397]
gi|257281392|gb|EEV11529.1| YlmH protein [Staphylococcus aureus subsp. aureus E1410]
gi|257284423|gb|EEV14543.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
M876]
gi|282313984|gb|EFB44376.1| hypothetical protein SARG_01553 [Staphylococcus aureus subsp.
aureus C101]
gi|282316699|gb|EFB47073.1| hypothetical protein SASG_00195 [Staphylococcus aureus subsp.
aureus C427]
gi|282322035|gb|EFB52359.1| YlmH protein [Staphylococcus aureus subsp. aureus M899]
gi|282330799|gb|EFB60313.1| hypothetical protein SDAG_01131 [Staphylococcus aureus subsp.
aureus Btn1260]
gi|282595361|gb|EFC00325.1| YlmH protein [Staphylococcus aureus subsp. aureus C160]
gi|290920619|gb|EFD97682.1| YlmH protein [Staphylococcus aureus subsp. aureus M1015]
gi|291096005|gb|EFE26266.1| hypothetical protein SCAG_01530 [Staphylococcus aureus subsp.
aureus 58-424]
gi|291467408|gb|EFF09925.1| hypothetical protein SAZG_01859 [Staphylococcus aureus subsp.
aureus M809]
gi|297576251|gb|EFH94967.1| S4 domain-containing protein YlmH [Staphylococcus aureus subsp.
aureus MN8]
gi|312438432|gb|ADQ77503.1| S4 domain-containing protein YlmH [Staphylococcus aureus subsp.
aureus TCH60]
gi|341853980|gb|EGS94856.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21195]
gi|365168607|gb|EHM59945.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21202]
gi|377703066|gb|EHT27382.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1214]
gi|377710435|gb|EHT34673.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1605]
gi|377760763|gb|EHT84639.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIGC341D]
Length = 268
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 6/151 (3%)
Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
D+ GG P AER R +S + E SD D+ + I F H LG+++
Sbjct: 66 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFDL-TLMEIDYPEKFVTLKHQHILGTLMS 123
Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 124 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181
Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K +SLR+D + + SR+ LI
Sbjct: 182 KIESATVSSLRLDVVIKEMIRKSRTIAKQLI 212
>gi|258449481|ref|ZP_05697584.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A6224]
gi|418637945|ref|ZP_13200248.1| YlmH family protein [Staphylococcus aureus subsp. aureus IS-3]
gi|418894809|ref|ZP_13448906.1| ylmH [Staphylococcus aureus subsp. aureus CIG1057]
gi|257857469|gb|EEV80367.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A6224]
gi|375023169|gb|EHS16632.1| YlmH family protein [Staphylococcus aureus subsp. aureus IS-3]
gi|377695673|gb|EHT20033.1| ylmH [Staphylococcus aureus subsp. aureus CIG1057]
Length = 218
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 6/156 (3%)
Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
D+ GG P AER R +S + E SD ++ + I F H LG+++
Sbjct: 66 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFEL-TLMEIEYPEKFVTLKHQHILGTLMS 123
Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 124 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181
Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSL 273
K+ +SLR+D + + SR+ LI + L
Sbjct: 182 KNESATVSSLRLDVVIKEMIRKSRTIAKQLIEKNVL 217
>gi|34762555|ref|ZP_00143551.1| RNA binding protein [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
gi|27887776|gb|EAA24849.1| RNA binding protein [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
Length = 241
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 103/214 (48%), Gaps = 23/214 (10%)
Query: 78 IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
+E++++ +++ + + V++S+ P S + K + +K +G E+ L
Sbjct: 5 LEKIENYIKLVEKTDT---VIYSNQFFPV----SQLNNLKYSGMKFSFKGLNEDCEKKLL 57
Query: 138 SVGHPEALTSD----PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGE 193
+V +PE T D P V I F H +LG+ILG GI RE +GD+I++
Sbjct: 58 AV-YPEYFTEDYLYFP--VKYFKIIKKSKFINLEHKHYLGNILGLGIKREILGDLIVKNN 114
Query: 194 KGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVD 250
+ +++ + D+L +L ++ + + I E + P+ + FK + +SLR+D
Sbjct: 115 ECYG-IILENMFDFLKENLLRINSSPIEIIEIT----EKDVPQNE-FKELNIRLSSLRLD 168
Query: 251 ALASAGFKLSRSKLVNLIRYSSLASLVQISAKAS 284
+L S LSR+ VN I ++ +I + S
Sbjct: 169 SLVSELTNLSRALSVNYIDLGNVQVNYEIQREKS 202
>gi|418559205|ref|ZP_13123751.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21252]
gi|371975496|gb|EHO92790.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21252]
Length = 268
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 6/151 (3%)
Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
D+ GG P AER R +S + E SD D+ + I F H LG+++
Sbjct: 66 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFDL-TLMEIDYPEKFVTLKHQHILGTLMS 123
Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 124 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181
Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K +SLR+D + + SR+ LI
Sbjct: 182 KIESATVSSLRLDVVIKEMIRKSRTIAKQLI 212
>gi|295427677|ref|ZP_06820309.1| hypothetical protein SIAG_00197 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|418565188|ref|ZP_13129602.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21264]
gi|418595566|ref|ZP_13159173.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21342]
gi|418601287|ref|ZP_13164725.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21345]
gi|418891823|ref|ZP_13445938.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1176]
gi|418908902|ref|ZP_13462905.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG149]
gi|418916986|ref|ZP_13470945.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1267]
gi|418922773|ref|ZP_13476690.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1233]
gi|418982104|ref|ZP_13529812.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1242]
gi|418985771|ref|ZP_13533457.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1500]
gi|295128035|gb|EFG57669.1| hypothetical protein SIAG_00197 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|371974669|gb|EHO91988.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21264]
gi|374399114|gb|EHQ70262.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21345]
gi|374401146|gb|EHQ72233.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21342]
gi|377704385|gb|EHT28694.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1242]
gi|377705589|gb|EHT29893.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1500]
gi|377731155|gb|EHT55212.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1176]
gi|377736096|gb|EHT60126.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1233]
gi|377750160|gb|EHT74098.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1267]
gi|377753940|gb|EHT77850.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG149]
Length = 259
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 6/151 (3%)
Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
D+ GG P AER R +S + E SD D+ + I F H LG+++
Sbjct: 57 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFDL-TLMEIDYPEKFVTLKHQHILGTLMS 114
Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 115 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 172
Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K +SLR+D + + SR+ LI
Sbjct: 173 KIESATVSSLRLDVVIKEMIRKSRTIAKQLI 203
>gi|419778746|ref|ZP_14304633.1| S4 domain protein [Streptococcus oralis SK10]
gi|383187168|gb|EIC79627.1| S4 domain protein [Streptococcus oralis SK10]
Length = 263
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 88/199 (44%), Gaps = 12/199 (6%)
Query: 94 RREVLHSDFLTPPVLKESMMALEKLADVKAVA---QGGYPQAERCRLSVGHPEALTSDPD 150
R E ++ LTP + L LA +A G + E R+ + +P+ +P+
Sbjct: 28 RVEDTYAAVLTPFINPHQEQILRVLAGTYGLACQSSGDFLPTESVRVLL-YPDYF--EPE 84
Query: 151 I----VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELA 205
I +A L I F+ SHG LG+I+ GI R+ GDI++ EK AQ V +
Sbjct: 85 ISDFEIALLEICYPSKFEQLSHGKILGTIINQLGIDRKLFGDILV-DEKRAQIFVNRDFI 143
Query: 206 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 265
+ K+G + VS P + + + +S R+DAL S+ KLSR++
Sbjct: 144 PLFQGGIRKIGRLPVSLEERPFTDRILSKIDYREREILVSSFRLDALLSSALKLSRNQTS 203
Query: 266 NLIRYSSLASLVQISAKAS 284
LI S+ + K+
Sbjct: 204 QLIEKKSVQVNYHVVEKSD 222
>gi|304381249|ref|ZP_07363902.1| S4 domain-containing protein YlmH [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|418598443|ref|ZP_13161953.1| YlmH family protein [Staphylococcus aureus subsp. aureus 21343]
gi|418955451|ref|ZP_13507391.1| YlmH family protein [Staphylococcus aureus subsp. aureus IS-189]
gi|304340232|gb|EFM06173.1| S4 domain-containing protein YlmH [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|374399800|gb|EHQ70936.1| YlmH family protein [Staphylococcus aureus subsp. aureus 21343]
gi|375370934|gb|EHS74726.1| YlmH family protein [Staphylococcus aureus subsp. aureus IS-189]
Length = 218
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 6/156 (3%)
Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
D+ GG P AER R +S + E SD ++ + I F H LG+++
Sbjct: 66 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFEL-TLMEIDYPEKFVTLKHQHILGTLMS 123
Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 124 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181
Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSL 273
K+ +SLR+D + + SR+ LI + L
Sbjct: 182 KNESATVSSLRLDVVIKEMIRKSRTIAKQLIEKNVL 217
>gi|282910764|ref|ZP_06318567.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282325369|gb|EFB55678.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
WBG10049]
Length = 268
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 6/151 (3%)
Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
D+ GG P AER R +S + E SD D+ + I F H LG+++
Sbjct: 66 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFDL-TLMEIDYPEKFVTLKHQHILGTLMS 123
Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 124 LGIKREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181
Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K +SLR+D + + SR+ LI
Sbjct: 182 KIESATVSSLRLDVVIKEMIRKSRTIAKQLI 212
>gi|260889804|ref|ZP_05901067.1| S4 domain protein [Leptotrichia hofstadii F0254]
gi|260860410|gb|EEX74910.1| S4 domain protein [Leptotrichia hofstadii F0254]
Length = 298
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL--QGEKGAQFLVVPE-LADYLITS 211
L I+ + F+ H DFLGS++G I RE +GD+IL +G+K + ++ V E +ADY+ +
Sbjct: 126 LKISIDSRFREYLHKDFLGSLMGLNIKRELMGDLILENEGKKISGYIPVSEKIADYISSE 185
Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA-SLRVDALASAGFKLSRSKLV 265
L+++G S I P K I S R+D++ S LSR+K++
Sbjct: 186 LKQIGKASCEIEIIDTKNKNILPQYKYDNKLITVPSKRLDSIISTITNLSRTKVI 240
>gi|269124017|ref|YP_003306594.1| RNA-binding S4 domain-containing protein [Streptobacillus
moniliformis DSM 12112]
gi|268315343|gb|ACZ01717.1| RNA-binding S4 domain protein [Streptobacillus moniliformis DSM
12112]
Length = 245
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 87/182 (47%), Gaps = 25/182 (13%)
Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNF 161
F+TP + K+ K ++ +G Y + + C + PE S + I N
Sbjct: 39 FITPNIYKK---LNNKYGNIYTYMEG-YDRKQIC-FTPYIPEFDYS------VIEIKINN 87
Query: 162 GFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVS 221
F +H DFLG+I+G I RE IGDI ++ + A L+ ++ D+++ +L+ +G
Sbjct: 88 RFITYTHKDFLGAIMGLNIKREMIGDIFVE-DNIAYVLISNKVLDFVMNNLKSIGKND-- 144
Query: 222 CTRIPLLALEYEPPRTKSFKTIEASL---RVDALASAGFKLSRSKLVNLIRYSSLASLVQ 278
++ + + + +F+ I+ ++ R+D SA LSR+K LI + LVQ
Sbjct: 145 ----AIIQISKKSNFSYTFQDIKINICSNRLDNFISAITNLSRNKANQLIE----SGLVQ 196
Query: 279 IS 280
I
Sbjct: 197 ID 198
>gi|416839232|ref|ZP_11902626.1| YlmH protein [Staphylococcus aureus O11]
gi|416847396|ref|ZP_11907118.1| YlmH protein [Staphylococcus aureus O46]
gi|323440963|gb|EGA98670.1| YlmH protein [Staphylococcus aureus O11]
gi|323442280|gb|EGA99910.1| YlmH protein [Staphylococcus aureus O46]
Length = 268
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 6/151 (3%)
Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
D+ GG P AER R +S + E SD D+ + I F H LG+++
Sbjct: 66 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFDL-TLMEIDYPEKFVTLKHQHILGTLMS 123
Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 124 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181
Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K +SLR+D + + SR+ LI
Sbjct: 182 KIESATVSSLRLDVVIKEMIRKSRTIAKQLI 212
>gi|237741192|ref|ZP_04571673.1| RNA binding protein [Fusobacterium sp. 4_1_13]
gi|229430724|gb|EEO40936.1| RNA binding protein [Fusobacterium sp. 4_1_13]
Length = 241
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 103/214 (48%), Gaps = 23/214 (10%)
Query: 78 IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
+E++++ +++A + V++S+ P S + K + +K +G E+ L
Sbjct: 5 LEKIENYIKLAEKTDI---VIYSNQFFPV----SQLNNLKYSGMKFSFKGLNEDCEKKLL 57
Query: 138 SVGHPEALTSD----PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGE 193
+V +PE T D P V I F H +LG+ILG GI RE +GD+I++
Sbjct: 58 AV-YPEYFTEDYLYFP--VKYFKIIKKSKFINLEHKHYLGNILGLGIKREILGDLIVKNN 114
Query: 194 KGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVD 250
+ +++ + D+L +L ++ + + I E + P+ + FK + +SLR+D
Sbjct: 115 ECYG-IILENMFDFLKENLLRINSSPIEIIEIT----ERDVPQNE-FKELNIRLSSLRLD 168
Query: 251 ALASAGFKLSRSKLVNLIRYSSLASLVQISAKAS 284
+L S LSR+ VN I ++ +I + S
Sbjct: 169 SLVSELTNLSRALSVNYIDLGNVQVNYEIQREKS 202
>gi|417797864|ref|ZP_12445050.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21310]
gi|418655142|ref|ZP_13217019.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-105]
gi|334276986|gb|EGL95225.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21310]
gi|375037991|gb|EHS30991.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-105]
Length = 268
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 6/151 (3%)
Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
D+ GG P AER R +S + E SD ++ + I F H LG+++
Sbjct: 66 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFEL-TLMEIEYPEKFVTLKHQHILGTLMS 123
Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 124 LGIEREQVGDIIVN--QRIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181
Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+ +SLR+D + + SR+ LI
Sbjct: 182 KNESATVSSLRLDVVIKEMIRKSRTIAKQLI 212
>gi|424827312|ref|ZP_18252121.1| hypothetical protein IYC_04578 [Clostridium sporogenes PA 3679]
gi|365980235|gb|EHN16271.1| hypothetical protein IYC_04578 [Clostridium sporogenes PA 3679]
Length = 256
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 98/202 (48%), Gaps = 15/202 (7%)
Query: 74 DKNAIEEVKHILEMARRA----SSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGY 129
+K IE+ +L++ +A + +++ S F T + K S L ++K G +
Sbjct: 8 NKVNIEDKSLLLDIYNKAILAEKTGKQLFSSYFCTNNICKVSC-ELAHFLNLKIDIFGVF 66
Query: 130 PQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
AER +G T D IV + I N F H DFLG++ GI REK+GD++
Sbjct: 67 KDAER--QIIGFNVYDTKDFPIVL-VKIDYNSKFVNLEHKDFLGALTSLGIKREKMGDLV 123
Query: 190 LQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFK---TIEAS 246
L+ + + +L +Y+ +L+ + V RI + L+ + +F+ I +S
Sbjct: 124 LK-QNSCYVPIYEDLYEYIYMNLDHIAKVP---CRIEKMDLKTQVIPEFNFQEKSIIVSS 179
Query: 247 LRVDALASAGFKLSRSKLVNLI 268
R D++ ++ +SR+K ++LI
Sbjct: 180 NRADSIVASLCNISRTKALDLI 201
>gi|319892185|ref|YP_004149060.1| hypothetical protein SPSINT_0896 [Staphylococcus pseudintermedius
HKU10-03]
gi|317161881|gb|ADV05424.1| hypothetical protein, contains S4- like RNA binding domain protein
[Staphylococcus pseudintermedius HKU10-03]
Length = 256
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 84/185 (45%), Gaps = 4/185 (2%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
E++ ++L+ R+A ++ + + FL P + + D+ GG AERCR
Sbjct: 13 EQIDYLLDKVRQAETQYAPVLTYFLDPRGQYMLEVIVGSFNDLHVSFDGG-RDAERCRAV 71
Query: 139 VGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
+ S D +A + I F H LG+++ GI RE++GDII+ + Q
Sbjct: 72 IAPSYYEPSRDDFELALIEIDYPTKFVTLQHQHVLGTLMSLGIEREQVGDIIVA--ERIQ 129
Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
F++ +L Y++ L ++ ++ IP + ++ + ++ R+D +
Sbjct: 130 FVLTKQLESYIMLELTRIKGATIKLHVIPFEDMIQSEEYWETHEATVSATRLDVVLKEMI 189
Query: 258 KLSRS 262
+ SR+
Sbjct: 190 RKSRT 194
>gi|325263921|ref|ZP_08130654.1| putative S4 domain protein [Clostridium sp. D5]
gi|324030959|gb|EGB92241.1| putative S4 domain protein [Clostridium sp. D5]
Length = 258
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 98/197 (49%), Gaps = 13/197 (6%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
K ++E++ A R + +SDFL L + + V GGY AER +++
Sbjct: 10 KRLIELSMTAYHRDIITYSDFLNLNELNILHSLPKDRLYTRYVTFGGYGTAER-QMAAFL 68
Query: 142 PEAL----TSDPDIV----AALSITG-NFGF-QPCSHGDFLGSILGTGIAREKIGDIILQ 191
P+AL +D + + + LSI N + + +H D+LG+ L GI R ++GDI++
Sbjct: 69 PDALYLRGITDMEALGFPFSVLSIEPLNEKYAEELTHRDYLGAALNLGIERSRLGDILID 128
Query: 192 GEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDA 251
G+K F V L+ +L L +V + SV L Y PR + K AS+R+D+
Sbjct: 129 GKKAILF-VEKGLSAWLQEELARVRHTSVMLREESLQDFHY-TPRFEEIKGTVASVRLDS 186
Query: 252 LASAGFKLSRSKLVNLI 268
L S F SR++L LI
Sbjct: 187 LLSLAFSSSRTRLSGLI 203
>gi|419785578|ref|ZP_14311330.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-M]
gi|383362548|gb|EID39899.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-M]
Length = 273
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 6/151 (3%)
Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
D+ GG P AER R +S + E SD ++ + I F H LG+++
Sbjct: 57 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFEL-TLMEIEYPEKFVTLKHQHILGTLMS 114
Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 115 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 172
Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+ +SLR+D + + SR+ LI
Sbjct: 173 KNESATVSSLRLDVVIKEMIRKSRTIAKQLI 203
>gi|281492478|ref|YP_003354458.1| S4 domain-containing RNA-binding protein [Lactococcus lactis subsp.
lactis KF147]
gi|281376142|gb|ADA65633.1| RNA-binding protein, containing S4 domain [Lactococcus lactis
subsp. lactis KF147]
Length = 263
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 83/189 (43%), Gaps = 11/189 (5%)
Query: 85 LEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS--VGHP 142
LE R V+ + FL P + L+ LA+ + V + R L + P
Sbjct: 22 LEWINRVEESYSVISTFFLNPR----EVDILKTLANKRNVQIFSSEELARTELVKIILAP 77
Query: 143 EALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFL 199
+ D + ++ L I F SH LG+ LG G+ R+++GDII+ K Q
Sbjct: 78 DFYVLDREDFDISLLEINYASKFVELSHAQVLGTFLGQAGVKRQELGDIIVSDNK-IQVF 136
Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
V L + ++EK+G +V I L L E + + +LRVD + + FK+
Sbjct: 137 VSKHLVESF-KAIEKIGRAAVKIQEISLENLVEETDKAVREVVLVDNLRVDKMIAVAFKI 195
Query: 260 SRSKLVNLI 268
SR+ N++
Sbjct: 196 SRNIATNML 204
>gi|448744994|ref|ZP_21726870.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
KT/Y21]
gi|445561703|gb|ELY17894.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
KT/Y21]
Length = 268
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 6/151 (3%)
Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
D+ GG P AER R +S + E SD ++ + I F H LG+++
Sbjct: 66 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFEL-TLMEIDYPEKFVTLKHQHILGTLMS 123
Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 124 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181
Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+ +SLR+D + + SR+ LI
Sbjct: 182 KNESATVSSLRLDVVIKEMIRKSRTIAKQLI 212
>gi|222151012|ref|YP_002560165.1| hypothetical protein MCCL_0762 [Macrococcus caseolyticus JCSC5402]
gi|222120134|dbj|BAH17469.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 257
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 84/187 (44%), Gaps = 6/187 (3%)
Query: 78 IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
IE VK + ++ +A S+ + + FL P + + L D+ GG + ER R
Sbjct: 12 IETVKVLEDLVAQAESQYAPILTHFLDPR-QQFILTTLVNRTDLNVSFYGGSGERERVR- 69
Query: 138 SVGHPEAL-TSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
++ +PE D V+A + F +H + LG+++ G RE +GDII E
Sbjct: 70 ALIYPEYYEVQQEDFEVSAFKVKYAQKFVTLTHRNVLGALMQLGFKREYLGDIITGDE-- 127
Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASA 255
Q ++ L DYL+ L K+ +V I L +S +SLR+D + +
Sbjct: 128 LQIVIASHLNDYLVQHLTKLKGSTVKLVAIDADTLNEAIETYQSHHATVSSLRLDVVVAE 187
Query: 256 GFKLSRS 262
+ SR+
Sbjct: 188 MMRKSRA 194
>gi|386830728|ref|YP_006237382.1| hypothetical protein SAEMRSA15_10240 [Staphylococcus aureus subsp.
aureus HO 5096 0412]
gi|385196120|emb|CCG15739.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
HO 5096 0412]
Length = 268
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 6/151 (3%)
Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
D+ GG P AER R +S + E SD ++ + I F H LG+++
Sbjct: 66 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFEL-TLMEIEYPEKFVTLKHQHILGTLMS 123
Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 124 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181
Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+ +SLR+D + + SR+ LI
Sbjct: 182 KNESATVSSLRLDVVIKEMIRKSRTIAKQLI 212
>gi|57651761|ref|YP_186067.1| YlmH protein [Staphylococcus aureus subsp. aureus COL]
gi|385781418|ref|YP_005757589.1| S4 domain-containing protein [Staphylococcus aureus subsp. aureus
11819-97]
gi|417796572|ref|ZP_12443780.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21305]
gi|417898905|ref|ZP_12542818.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21259]
gi|418570819|ref|ZP_13135080.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21283]
gi|418574683|ref|ZP_13138850.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21333]
gi|418642798|ref|ZP_13204984.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-24]
gi|418647698|ref|ZP_13209761.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-88]
gi|418649586|ref|ZP_13211614.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-91]
gi|418873533|ref|ZP_13427828.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-125]
gi|418875125|ref|ZP_13429385.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIGC93]
gi|418906125|ref|ZP_13460152.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIGC345D]
gi|418911796|ref|ZP_13465779.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG547]
gi|418928447|ref|ZP_13482333.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1612]
gi|418934090|ref|ZP_13487914.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIGC128]
gi|418988012|ref|ZP_13535685.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1835]
gi|419775309|ref|ZP_14301251.1| S4 domain protein [Staphylococcus aureus subsp. aureus CO-23]
gi|57285947|gb|AAW38041.1| YlmH protein [Staphylococcus aureus subsp. aureus COL]
gi|334268562|gb|EGL86996.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21305]
gi|341847188|gb|EGS88373.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21259]
gi|364522407|gb|AEW65157.1| S4 domain protein [Staphylococcus aureus subsp. aureus 11819-97]
gi|371978814|gb|EHO96055.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21333]
gi|371982999|gb|EHP00147.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21283]
gi|375015911|gb|EHS09555.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-24]
gi|375029408|gb|EHS22736.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-88]
gi|375029959|gb|EHS23284.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-91]
gi|375366070|gb|EHS70082.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-125]
gi|377719800|gb|EHT43970.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1835]
gi|377725174|gb|EHT49289.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG547]
gi|377738359|gb|EHT62368.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1612]
gi|377765425|gb|EHT89275.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIGC345D]
gi|377770185|gb|EHT93947.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIGC93]
gi|377771870|gb|EHT95624.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIGC128]
gi|383970993|gb|EID87083.1| S4 domain protein [Staphylococcus aureus subsp. aureus CO-23]
Length = 259
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 6/151 (3%)
Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
D+ GG P AER R +S + E SD ++ + I F H LG+++
Sbjct: 57 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFEL-TLMEIDYPEKFVTLKHQHILGTLMS 114
Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 115 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 172
Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+ +SLR+D + + SR+ LI
Sbjct: 173 KNESATVSSLRLDVVIKEMIRKSRTIAKQLI 203
>gi|345021943|ref|ZP_08785556.1| hypothetical protein OTW25_11484 [Ornithinibacillus scapharcae
TW25]
Length = 249
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 73/144 (50%), Gaps = 2/144 (1%)
Query: 127 GGYPQAERCRLSVG-HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
GG +ER R + + E +T++ ++ + + + F +H D LG+ L GI+R+K+
Sbjct: 62 GGGSHSERKRAIIAPYYEEITNNTFNISLIQASYHEKFITIAHRDVLGAFLSLGISRKKL 121
Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
GD + G+ Q L+ ++A Y+ +L + +++ + L + + I +
Sbjct: 122 GD-LYAGDGKIQILLDKDIASYVQMNLTGIKRATITFEEVSFDKLIEQKSVWNESEKIVS 180
Query: 246 SLRVDALASAGFKLSRSKLVNLIR 269
SLR+D + + LSR + +LI+
Sbjct: 181 SLRLDTILKEIYNLSRKQAQDLIQ 204
>gi|417800967|ref|ZP_12448069.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21318]
gi|418886451|ref|ZP_13440599.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1150]
gi|418920269|ref|ZP_13474202.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIGC348]
gi|418991053|ref|ZP_13538714.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1096]
gi|334277461|gb|EGL95691.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21318]
gi|377723175|gb|EHT47300.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1096]
gi|377725404|gb|EHT49517.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1150]
gi|377765628|gb|EHT89477.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIGC348]
Length = 259
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 6/151 (3%)
Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
D+ GG P AER R +S + E SD ++ + I F H LG+++
Sbjct: 57 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFEL-TLMEIEYPEKFVTLKHQHILGTLMS 114
Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 115 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 172
Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+ +SLR+D + + SR+ LI
Sbjct: 173 KNESATVSSLRLDVVIKEMIRKSRTIAKQLI 203
>gi|418643756|ref|ZP_13205914.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-55]
gi|421150074|ref|ZP_15609730.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
subsp. aureus str. Newbould 305]
gi|443640103|ref|ZP_21124100.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21196]
gi|375028054|gb|EHS21410.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-55]
gi|394329464|gb|EJE55566.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
subsp. aureus str. Newbould 305]
gi|443405850|gb|ELS64441.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21196]
Length = 259
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 6/151 (3%)
Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
D+ GG P AER R +S + E SD ++ + I F H LG+++
Sbjct: 57 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFEL-TLMEIEYPEKFVTLKHQHILGTLMS 114
Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 115 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 172
Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+ +SLR+D + + SR+ LI
Sbjct: 173 KNESATVSSLRLDVVIKEMIRKSRTIAKQLI 203
>gi|337281553|ref|YP_004621024.1| S4 domain-containing protein YlmH [Streptococcus parasanguinis ATCC
15912]
gi|335369146|gb|AEH55096.1| S4 domain-containing protein YlmH [Streptococcus parasanguinis ATCC
15912]
Length = 263
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 83/196 (42%), Gaps = 12/196 (6%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERC 135
E + +E++ R R V + FL P + L +A ++ A + E
Sbjct: 16 EFIDRCIELSERVIERYSVEVTGFLNP----HQVAILRNVAASYQLQVFASSDEQKMEYA 71
Query: 136 RLSVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQG 192
++ V P+ DP+ +A L + F SH LG+I+ G+ R+ GDI L
Sbjct: 72 KVIVA-PDYYQLDPNDFDLALLEMVYASKFHHLSHSQVLGTIVHQLGVERKSFGDI-LTS 129
Query: 193 EKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDAL 252
E Q V Y + ++K+ V V +PL ++ + +S R+D +
Sbjct: 130 EGKIQVFVEQRFVHYFMDHIQKISRVPVRLREVPLSEQMIVEEESQQRDILVSSFRLDKV 189
Query: 253 ASAGFKLSRSKLVNLI 268
+ FKLSRS+ LI
Sbjct: 190 IAGTFKLSRSQASQLI 205
>gi|253731810|ref|ZP_04865975.1| ribosomal protein S4e [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253724460|gb|EES93189.1| ribosomal protein S4e [Staphylococcus aureus subsp. aureus
USA300_TCH959]
Length = 268
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 6/151 (3%)
Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
D+ GG P AER R +S + E SD ++ + I F H LG+++
Sbjct: 66 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFEL-TLMEIEYPEKFVTLKHQHILGTLMS 123
Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 124 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181
Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+ +SLR+D + + SR+ LI
Sbjct: 182 KNESATVSSLRLDVVIKEMIRKSRTIAKQLI 212
>gi|374673974|dbj|BAL51865.1| hypothetical protein lilo_1869 [Lactococcus lactis subsp. lactis
IO-1]
Length = 230
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 4/123 (3%)
Query: 147 SDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELA 205
D DI + L I F SH LG+ LG G+ R+++GDII+ K Q V L
Sbjct: 52 EDFDI-SLLEINYASKFVELSHAQVLGTFLGQAGVKRQELGDIIVSDNK-IQVFVSKHLV 109
Query: 206 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 265
+ ++EK+G +V I L +L E + + +LRVD + + FK+SR+
Sbjct: 110 ESF-KAIEKIGRAAVKIQEISLESLVEETDKAVREVVLVDNLRVDKMIAVAFKISRNIAT 168
Query: 266 NLI 268
N++
Sbjct: 169 NML 171
>gi|406577797|ref|ZP_11053386.1| hypothetical protein GMD6S_06984 [Streptococcus sp. GMD6S]
gi|404459490|gb|EKA05846.1| hypothetical protein GMD6S_06984 [Streptococcus sp. GMD6S]
Length = 263
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 2/134 (1%)
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLIT 210
+A L I F+ SHG LG+I+ GI R+ GDI++ EK AQ V +
Sbjct: 90 MALLEICYPSKFEQLSHGKILGTIINQLGIDRKLFGDILVD-EKRAQIFVNRDFIPLFQD 148
Query: 211 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRY 270
+ K+G + VS P + + + +S R+DAL S+ KLSR++ LI
Sbjct: 149 GIRKIGRLPVSLEECPFTDRILSKIDYREREILVSSFRLDALLSSALKLSRNQTSQLIEK 208
Query: 271 SSLASLVQISAKAS 284
S+ + K+
Sbjct: 209 KSVQVNYHVVEKSD 222
>gi|357239718|ref|ZP_09127052.1| S4 domain protein [Streptococcus ictaluri 707-05]
gi|356751474|gb|EHI68626.1| S4 domain protein [Streptococcus ictaluri 707-05]
Length = 263
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 3/125 (2%)
Query: 146 TSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPEL 204
T D D+ A + I+ N F SH LG+++ GI R +GDI L + AQ ++ +L
Sbjct: 85 TEDFDM-ALVEISYNAKFNHLSHAQILGTLINELGIKRSLLGDIYLDLDY-AQIMISRKL 142
Query: 205 ADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKL 264
YL+ ++ K+ SV+ + L + + +SLR+D L + KLSRS+
Sbjct: 143 LPYLLGNISKIARASVTLKEVTFDQLVQGTAQEITLDLTVSSLRLDRLLATVLKLSRSQA 202
Query: 265 VNLIR 269
+ LI
Sbjct: 203 IKLIE 207
>gi|148267683|ref|YP_001246626.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
subsp. aureus JH9]
gi|150393741|ref|YP_001316416.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
subsp. aureus JH1]
gi|253314955|ref|ZP_04838168.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
subsp. aureus str. CF-Marseille]
gi|255005978|ref|ZP_05144579.2| RNA-binding S4 domain-containing protein [Staphylococcus aureus
subsp. aureus Mu50-omega]
gi|257795753|ref|ZP_05644732.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A9781]
gi|258415977|ref|ZP_05682247.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A9763]
gi|258419724|ref|ZP_05682691.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A9719]
gi|258438766|ref|ZP_05689919.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A9299]
gi|258444528|ref|ZP_05692857.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A8115]
gi|258447639|ref|ZP_05695783.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A6300]
gi|258454860|ref|ZP_05702824.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A5937]
gi|269202806|ref|YP_003282075.1| RNA-binding S4 domain protein [Staphylococcus aureus subsp. aureus
ED98]
gi|282892677|ref|ZP_06300912.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A8117]
gi|282929236|ref|ZP_06336811.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A10102]
gi|295407129|ref|ZP_06816930.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A8819]
gi|296276133|ref|ZP_06858640.1| RNA-binding S4 domain protein [Staphylococcus aureus subsp. aureus
MR1]
gi|297245985|ref|ZP_06929844.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A8796]
gi|384864418|ref|YP_005749777.1| S4 domain-containing protein [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|415691038|ref|ZP_11453277.1| RNA-binding S4 domain protein [Staphylococcus aureus subsp. aureus
CGS03]
gi|417651228|ref|ZP_12300991.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21172]
gi|417893418|ref|ZP_12537447.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21201]
gi|418424329|ref|ZP_12997452.1| hypothetical protein MQA_02001 [Staphylococcus aureus subsp. aureus
VRS1]
gi|418427326|ref|ZP_13000338.1| hypothetical protein MQC_00032 [Staphylococcus aureus subsp. aureus
VRS2]
gi|418430167|ref|ZP_13003083.1| hypothetical protein MQE_00031 [Staphylococcus aureus subsp. aureus
VRS3a]
gi|418433128|ref|ZP_13005908.1| hypothetical protein MQG_01683 [Staphylococcus aureus subsp. aureus
VRS4]
gi|418436803|ref|ZP_13008605.1| hypothetical protein MQI_00624 [Staphylococcus aureus subsp. aureus
VRS5]
gi|418439674|ref|ZP_13011382.1| hypothetical protein MQK_01343 [Staphylococcus aureus subsp. aureus
VRS6]
gi|418442727|ref|ZP_13014329.1| hypothetical protein MQM_00279 [Staphylococcus aureus subsp. aureus
VRS7]
gi|418445786|ref|ZP_13017262.1| hypothetical protein MQO_00032 [Staphylococcus aureus subsp. aureus
VRS8]
gi|418448730|ref|ZP_13020122.1| hypothetical protein MQQ_00804 [Staphylococcus aureus subsp. aureus
VRS9]
gi|418451554|ref|ZP_13022888.1| hypothetical protein MQS_00032 [Staphylococcus aureus subsp. aureus
VRS10]
gi|418454610|ref|ZP_13025872.1| hypothetical protein MQU_00497 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|418457486|ref|ZP_13028689.1| hypothetical protein MQW_00324 [Staphylococcus aureus subsp. aureus
VRS11b]
gi|418568958|ref|ZP_13133298.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21272]
gi|418654785|ref|ZP_13216681.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-99]
gi|418663139|ref|ZP_13224664.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-122]
gi|418878041|ref|ZP_13432276.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1165]
gi|418880868|ref|ZP_13435087.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1213]
gi|418883797|ref|ZP_13437992.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1769]
gi|418914288|ref|ZP_13468260.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIGC340D]
gi|424768621|ref|ZP_18195885.1| S4 domain protein [Staphylococcus aureus subsp. aureus CM05]
gi|443637330|ref|ZP_21121412.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21236]
gi|147740752|gb|ABQ49050.1| RNA-binding S4 domain protein [Staphylococcus aureus subsp. aureus
JH9]
gi|149946193|gb|ABR52129.1| RNA-binding S4 domain protein [Staphylococcus aureus subsp. aureus
JH1]
gi|257789725|gb|EEV28065.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A9781]
gi|257839313|gb|EEV63787.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A9763]
gi|257844309|gb|EEV68691.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A9719]
gi|257848025|gb|EEV72018.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A9299]
gi|257850021|gb|EEV73974.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A8115]
gi|257853830|gb|EEV76789.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A6300]
gi|257863243|gb|EEV86007.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A5937]
gi|262075096|gb|ACY11069.1| RNA-binding S4 domain protein [Staphylococcus aureus subsp. aureus
ED98]
gi|282589195|gb|EFB94292.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A10102]
gi|282764674|gb|EFC04799.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A8117]
gi|294967982|gb|EFG44010.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A8819]
gi|297177149|gb|EFH36403.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A8796]
gi|312829585|emb|CBX34427.1| S4 domain protein [Staphylococcus aureus subsp. aureus ECT-R 2]
gi|315130982|gb|EFT86966.1| RNA-binding S4 domain protein [Staphylococcus aureus subsp. aureus
CGS03]
gi|329727412|gb|EGG63868.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21172]
gi|341854803|gb|EGS95665.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21201]
gi|371978143|gb|EHO95393.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21272]
gi|375014610|gb|EHS08291.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-99]
gi|375034772|gb|EHS27922.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-122]
gi|377694163|gb|EHT18528.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1165]
gi|377714884|gb|EHT39082.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1769]
gi|377731761|gb|EHT55814.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1213]
gi|377757790|gb|EHT81678.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIGC340D]
gi|387718562|gb|EIK06520.1| hypothetical protein MQE_00031 [Staphylococcus aureus subsp. aureus
VRS3a]
gi|387718913|gb|EIK06869.1| hypothetical protein MQC_00032 [Staphylococcus aureus subsp. aureus
VRS2]
gi|387720632|gb|EIK08539.1| hypothetical protein MQA_02001 [Staphylococcus aureus subsp. aureus
VRS1]
gi|387725794|gb|EIK13392.1| hypothetical protein MQG_01683 [Staphylococcus aureus subsp. aureus
VRS4]
gi|387727907|gb|EIK15407.1| hypothetical protein MQI_00624 [Staphylococcus aureus subsp. aureus
VRS5]
gi|387730777|gb|EIK18135.1| hypothetical protein MQK_01343 [Staphylococcus aureus subsp. aureus
VRS6]
gi|387735714|gb|EIK22824.1| hypothetical protein MQO_00032 [Staphylococcus aureus subsp. aureus
VRS8]
gi|387737392|gb|EIK24458.1| hypothetical protein MQM_00279 [Staphylococcus aureus subsp. aureus
VRS7]
gi|387737946|gb|EIK25000.1| hypothetical protein MQQ_00804 [Staphylococcus aureus subsp. aureus
VRS9]
gi|387744435|gb|EIK31199.1| hypothetical protein MQS_00032 [Staphylococcus aureus subsp. aureus
VRS10]
gi|387745725|gb|EIK32475.1| hypothetical protein MQU_00497 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|387747218|gb|EIK33927.1| hypothetical protein MQW_00324 [Staphylococcus aureus subsp. aureus
VRS11b]
gi|402348512|gb|EJU83498.1| S4 domain protein [Staphylococcus aureus subsp. aureus CM05]
gi|408423395|emb|CCJ10806.1| S4 domain protein [Staphylococcus aureus subsp. aureus ST228]
gi|408425385|emb|CCJ12772.1| S4 domain protein [Staphylococcus aureus subsp. aureus ST228]
gi|408427373|emb|CCJ14736.1| S4 domain protein [Staphylococcus aureus subsp. aureus ST228]
gi|408429360|emb|CCJ26525.1| S4 domain protein [Staphylococcus aureus subsp. aureus ST228]
gi|408431348|emb|CCJ18663.1| S4 domain protein [Staphylococcus aureus subsp. aureus ST228]
gi|408433342|emb|CCJ20627.1| S4 domain protein [Staphylococcus aureus subsp. aureus ST228]
gi|408435333|emb|CCJ22593.1| S4 domain protein [Staphylococcus aureus subsp. aureus ST228]
gi|408437318|emb|CCJ24561.1| S4 domain protein [Staphylococcus aureus subsp. aureus ST228]
gi|443405911|gb|ELS64501.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21236]
Length = 268
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 6/151 (3%)
Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
D+ GG P AER R +S + E SD ++ + I F H LG+++
Sbjct: 66 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFEL-TLMEIEYPEKFVTLKHQHILGTLMS 123
Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 124 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181
Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+ +SLR+D + + SR+ LI
Sbjct: 182 KNESATVSSLRLDVVIKEMIRKSRTIAKQLI 212
>gi|21282803|ref|NP_645891.1| hypothetical protein MW1074 [Staphylococcus aureus subsp. aureus
MW2]
gi|49486031|ref|YP_043252.1| hypothetical protein SAS1125 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|87159985|ref|YP_493782.1| hypothetical protein SAUSA300_1085 [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|88194897|ref|YP_499697.1| hypothetical protein SAOUHSC_01156 [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|161509365|ref|YP_001575024.1| hypothetical protein USA300HOU_1128 [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|221140637|ref|ZP_03565130.1| hypothetical protein SauraJ_03241 [Staphylococcus aureus subsp.
aureus str. JKD6009]
gi|253733570|ref|ZP_04867735.1| ribosomal protein S4e [Staphylococcus aureus subsp. aureus TCH130]
gi|258451889|ref|ZP_05699910.1| conserved hypothetical protein [Staphylococcus aureus A5948]
gi|282919972|ref|ZP_06327701.1| conserved hypothetical protein [Staphylococcus aureus A9765]
gi|284024115|ref|ZP_06378513.1| hypothetical protein Saura13_05969 [Staphylococcus aureus subsp.
aureus 132]
gi|294848184|ref|ZP_06788931.1| hypothetical protein SKAG_00243 [Staphylococcus aureus A9754]
gi|297208167|ref|ZP_06924597.1| S4 domain-containing protein YlmH [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|300912245|ref|ZP_07129688.1| S4 domain-containing protein YlmH [Staphylococcus aureus subsp.
aureus TCH70]
gi|379014382|ref|YP_005290618.1| hypothetical protein SAVC_05120 [Staphylococcus aureus subsp.
aureus VC40]
gi|384861785|ref|YP_005744505.1| S4 RNA binding domain protein [Staphylococcus aureus subsp. aureus
str. JKD6008]
gi|384869724|ref|YP_005752438.1| MW1074 protein [Staphylococcus aureus subsp. aureus T0131]
gi|415688517|ref|ZP_11452207.1| hypothetical protein CGSSa01_04105 [Staphylococcus aureus subsp.
aureus CGS01]
gi|417650017|ref|ZP_12299797.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21189]
gi|417655639|ref|ZP_12305349.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21193]
gi|417901463|ref|ZP_12545339.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21266]
gi|418280910|ref|ZP_12893732.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21178]
gi|418286371|ref|ZP_12899017.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21209]
gi|418316104|ref|ZP_12927548.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21340]
gi|418321928|ref|ZP_12933267.1| S4 domain protein [Staphylococcus aureus subsp. aureus VCU006]
gi|418579021|ref|ZP_13143116.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1114]
gi|418657802|ref|ZP_13219557.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-111]
gi|418903399|ref|ZP_13457440.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1770]
gi|418925423|ref|ZP_13479325.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG2018]
gi|422743419|ref|ZP_16797403.1| S4 domain protein [Staphylococcus aureus subsp. aureus MRSA177]
gi|422745579|ref|ZP_16799518.1| S4 domain protein [Staphylococcus aureus subsp. aureus MRSA131]
gi|424785020|ref|ZP_18211823.1| hypothetical protein CN79_1133 [Staphylococcus aureus CN79]
gi|440708384|ref|ZP_20889050.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21282]
gi|440734636|ref|ZP_20914248.1| S4 domain-containing protein YlmH [Staphylococcus aureus subsp.
aureus DSM 20231]
gi|448740325|ref|ZP_21722305.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
KT/314250]
gi|21204241|dbj|BAB94939.1| MW1074 [Staphylococcus aureus subsp. aureus MW2]
gi|49244474|emb|CAG42902.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|87125959|gb|ABD20473.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87202455|gb|ABD30265.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|160368174|gb|ABX29145.1| hypothetical protein USA300HOU_1128 [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|253728440|gb|EES97169.1| ribosomal protein S4e [Staphylococcus aureus subsp. aureus TCH130]
gi|257860497|gb|EEV83324.1| conserved hypothetical protein [Staphylococcus aureus A5948]
gi|282594688|gb|EFB99672.1| conserved hypothetical protein [Staphylococcus aureus A9765]
gi|294824984|gb|EFG41406.1| hypothetical protein SKAG_00243 [Staphylococcus aureus A9754]
gi|296886906|gb|EFH25809.1| S4 domain-containing protein YlmH [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|300886491|gb|EFK81693.1| S4 domain-containing protein YlmH [Staphylococcus aureus subsp.
aureus TCH70]
gi|302751014|gb|ADL65191.1| S4 RNA binding domain protein [Staphylococcus aureus subsp. aureus
str. JKD6008]
gi|315196921|gb|EFU27264.1| hypothetical protein CGSSa01_04105 [Staphylococcus aureus subsp.
aureus CGS01]
gi|320140994|gb|EFW32841.1| S4 domain protein [Staphylococcus aureus subsp. aureus MRSA131]
gi|320143050|gb|EFW34840.1| S4 domain protein [Staphylococcus aureus subsp. aureus MRSA177]
gi|329313859|gb|AEB88272.1| MW1074 protein [Staphylococcus aureus subsp. aureus T0131]
gi|329725026|gb|EGG61522.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21189]
gi|329728857|gb|EGG65278.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21193]
gi|341845302|gb|EGS86504.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21266]
gi|365167011|gb|EHM58488.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21178]
gi|365167079|gb|EHM58555.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21209]
gi|365224543|gb|EHM65808.1| S4 domain protein [Staphylococcus aureus subsp. aureus VCU006]
gi|365241775|gb|EHM82510.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21340]
gi|374363079|gb|AEZ37184.1| hypothetical protein SAVC_05120 [Staphylococcus aureus subsp.
aureus VC40]
gi|375039966|gb|EHS32876.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-111]
gi|377697048|gb|EHT21403.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1114]
gi|377742414|gb|EHT66399.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1770]
gi|377744492|gb|EHT68469.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG2018]
gi|421956430|gb|EKU08759.1| hypothetical protein CN79_1133 [Staphylococcus aureus CN79]
gi|436431664|gb|ELP29017.1| S4 domain-containing protein YlmH [Staphylococcus aureus subsp.
aureus DSM 20231]
gi|436504967|gb|ELP40928.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21282]
gi|445548970|gb|ELY17216.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
KT/314250]
Length = 268
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 6/151 (3%)
Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
D+ GG P AER R +S + E SD ++ + I F H LG+++
Sbjct: 66 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFEL-TLMEIDYPEKFVTLKHQHILGTLMS 123
Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 124 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181
Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+ +SLR+D + + SR+ LI
Sbjct: 182 KNESATVSSLRLDVVIKEMIRKSRTIAKQLI 212
>gi|314933367|ref|ZP_07840732.1| YlmH protein [Staphylococcus caprae C87]
gi|313653517|gb|EFS17274.1| YlmH protein [Staphylococcus caprae C87]
Length = 262
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 5/151 (3%)
Query: 120 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILG 177
D+ V G P AER R + P + P+ ++ L I F H LG+++
Sbjct: 59 DMLKVNFYGGPYAERKRAIIA-PSYYEAQPEDFELSLLRIDYPEKFVSIHHQHVLGTLMS 117
Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
GI RE++GDII+ G+ QF++ L Y++ L ++ +V IP+ +
Sbjct: 118 LGIEREQLGDIIVAGD--IQFVLTERLESYIMFELNRIKGATVKLNSIPIKDMIQSEENW 175
Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K T +++R+D + SR+ LI
Sbjct: 176 KIHSTTVSAMRLDVVLKDMIHKSRNIAKQLI 206
>gi|293365886|ref|ZP_06612589.1| S4 domain-containing protein YlmH [Streptococcus oralis ATCC 35037]
gi|307702291|ref|ZP_07639249.1| S4 domain protein [Streptococcus oralis ATCC 35037]
gi|291315564|gb|EFE56014.1| S4 domain-containing protein YlmH [Streptococcus oralis ATCC 35037]
gi|307624094|gb|EFO03073.1| S4 domain protein [Streptococcus oralis ATCC 35037]
Length = 263
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 2/134 (1%)
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLIT 210
+A L I F+ SHG LG+I+ GI R+ GDI++ EK AQ V +
Sbjct: 90 MALLEICYPSKFEQLSHGKILGTIINQLGIDRKLFGDILVD-EKRAQIFVNRDFIPLFQD 148
Query: 211 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRY 270
+ K+G + VS P + + + +S R+DAL S+ KLSR++ LI
Sbjct: 149 GIRKIGRLPVSLEECPFTDRILSKIDYREREILVSSFRLDALLSSALKLSRNQTSQLIEK 208
Query: 271 SSLASLVQISAKAS 284
S+ + K+
Sbjct: 209 KSVQVNYHVVEKSD 222
>gi|262048764|ref|ZP_06021646.1| hypothetical protein SAD30_1594 [Staphylococcus aureus D30]
gi|262051690|ref|ZP_06023909.1| hypothetical protein SA930_1517 [Staphylococcus aureus 930918-3]
gi|259160425|gb|EEW45450.1| hypothetical protein SA930_1517 [Staphylococcus aureus 930918-3]
gi|259163220|gb|EEW47780.1| hypothetical protein SAD30_1594 [Staphylococcus aureus D30]
Length = 212
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 6/151 (3%)
Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
D+ GG P AER R +S + E SD ++ + I F H LG+++
Sbjct: 10 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFEL-TLMEIDYPEKFVTLKHQHILGTLMS 67
Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 68 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 125
Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+ +SLR+D + + SR+ LI
Sbjct: 126 KNESATVSSLRLDVVIKEMIRKSRTIAKQLI 156
>gi|417895603|ref|ZP_12539585.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21235]
gi|341841500|gb|EGS82957.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21235]
Length = 210
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 6/151 (3%)
Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
D+ GG P AER R +S + E SD D+ + I F H LG+++
Sbjct: 8 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFDL-TLIEIDYPEKFITLKHQHILGTLMS 65
Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 66 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 123
Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K +SLR+D + + SR+ LI
Sbjct: 124 KIESATVSSLRLDVVIKEMIRKSRTIAKQLI 154
>gi|15924181|ref|NP_371715.1| hypothetical protein SAV1191 [Staphylococcus aureus subsp. aureus
Mu50]
gi|15926774|ref|NP_374307.1| hypothetical protein SA1034 [Staphylococcus aureus subsp. aureus
N315]
gi|156979512|ref|YP_001441771.1| hypothetical protein SAHV_1181 [Staphylococcus aureus subsp. aureus
Mu3]
gi|387150334|ref|YP_005741898.1| hypothetical protein SA2981_1149 [Staphylococcus aureus 04-02981]
gi|13700990|dbj|BAB42286.1| SA1034 [Staphylococcus aureus subsp. aureus N315]
gi|14246961|dbj|BAB57353.1| YlmH [Staphylococcus aureus subsp. aureus Mu50]
gi|156721647|dbj|BAF78064.1| hypothetical protein SAHV_1181 [Staphylococcus aureus subsp. aureus
Mu3]
gi|285816873|gb|ADC37360.1| hypothetical protein, contains S4-like RNA binding domain
[Staphylococcus aureus 04-02981]
Length = 212
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 6/151 (3%)
Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
D+ GG P AER R +S + E SD ++ + I F H LG+++
Sbjct: 10 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFEL-TLMEIEYPEKFVTLKHQHILGTLMS 67
Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 68 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 125
Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+ +SLR+D + + SR+ LI
Sbjct: 126 KNESATVSSLRLDVVIKEMIRKSRTIAKQLI 156
>gi|450137355|ref|ZP_21871594.1| hypothetical protein SMU89_01932 [Streptococcus mutans NLML1]
gi|449235429|gb|EMC34387.1| hypothetical protein SMU89_01932 [Streptococcus mutans NLML1]
Length = 262
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 78/175 (44%), Gaps = 12/175 (6%)
Query: 100 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 154
++FL P V+K S++ KL + + +E RL + + E +D I +
Sbjct: 37 TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91
Query: 155 LSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
L I N F H LG+++ GI R +GDII+Q E AQ + + YL +
Sbjct: 92 LEINYNSKFNQLIHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150
Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K+G +V IP + + +S+R+D + + KLSR + LI
Sbjct: 151 KIGKAAVVFEEIPFERQITSQSHIREMNVLVSSMRLDKIIATVLKLSRRQANQLI 205
>gi|15673847|ref|NP_268022.1| hypothetical protein L118668 [Lactococcus lactis subsp. lactis
Il1403]
gi|385831350|ref|YP_005869163.1| S4 domain-containing RNA-binding protein [Lactococcus lactis subsp.
lactis CV56]
gi|12724897|gb|AAK05963.1|AE006416_8 hypothetical protein L118668 [Lactococcus lactis subsp. lactis
Il1403]
gi|326407358|gb|ADZ64429.1| S4 domain-containing RNA-binding protein [Lactococcus lactis subsp.
lactis CV56]
Length = 263
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 82/186 (44%), Gaps = 5/186 (2%)
Query: 85 LEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEA 144
LE R V+ + FL P + +++ L +V+ + + E ++ +
Sbjct: 22 LEWINRVEESYSVISTFFLNPREV-DTLKTLANKRNVQIFSSEELARTELVKIILAPDFY 80
Query: 145 LTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVP 202
+ D + L I F SH LG+ LG G+ R+++GDII+ K Q V
Sbjct: 81 VLDREDFDICLLEINYASKFVELSHAQVLGTFLGQAGVKRQELGDIIVSDNK-IQVFVSK 139
Query: 203 ELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRS 262
L + ++EK+G ++ I L L E + + +LRVD + + FK+SR+
Sbjct: 140 HLVESF-KAIEKIGRAAIKIQEISLENLVEETDKAVREVVLVDNLRVDKMIAVAFKISRN 198
Query: 263 KLVNLI 268
N++
Sbjct: 199 IATNML 204
>gi|187779880|ref|ZP_02996353.1| hypothetical protein CLOSPO_03476 [Clostridium sporogenes ATCC
15579]
gi|187773505|gb|EDU37307.1| hypothetical protein CLOSPO_03476 [Clostridium sporogenes ATCC
15579]
Length = 256
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 98/202 (48%), Gaps = 15/202 (7%)
Query: 74 DKNAIEEVKHILEMARRA----SSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGY 129
+K IE+ +L++ +A + +++ S F T + K S L + ++K G +
Sbjct: 8 NKVNIEDKSLLLDIYNKAILAEKTGKQLFSSYFCTNNICKVSC-ELAQFLNLKIDIFGVF 66
Query: 130 PQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
AER +G T D IV + I N F H DFLG++ GI REK+GD++
Sbjct: 67 KDAER--QIIGFNVYDTEDFPIVL-VKINYNSKFVNLEHKDFLGALTSLGIKREKMGDLV 123
Query: 190 LQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFK---TIEAS 246
L+ + + +L +Y+ +L+ + RI + L+ + +F+ I +S
Sbjct: 124 LK-QNSCYVPIYEDLYEYIYMNLDHIAKAP---CRIEKMDLKTQVIPEFNFQEKSIIVSS 179
Query: 247 LRVDALASAGFKLSRSKLVNLI 268
R D++ ++ +SR+K ++LI
Sbjct: 180 NRADSIVASLCNISRTKALDLI 201
>gi|419781845|ref|ZP_14307659.1| S4 domain protein [Streptococcus oralis SK610]
gi|383183903|gb|EIC76435.1| S4 domain protein [Streptococcus oralis SK610]
Length = 263
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 2/123 (1%)
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLIT 210
+A L I F+ SHG LG+I+ GI R+ GDI++ EK AQ V +
Sbjct: 90 MALLEICYPSKFEQLSHGKILGTIINQLGIDRKLFGDILV-DEKRAQIFVNRDFIPLFQD 148
Query: 211 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRY 270
+ K+G + VS P + + + +S R+DAL S+ KLSR++ LI
Sbjct: 149 GIRKIGRLPVSLEECPFTDRILSKIDYREREILVSSFRLDALLSSALKLSRNQTSQLIEK 208
Query: 271 SSL 273
S+
Sbjct: 209 KSV 211
>gi|335429598|ref|ZP_08556496.1| hypothetical protein HLPCO_11493 [Haloplasma contractile SSD-17B]
gi|334889608|gb|EGM27893.1| hypothetical protein HLPCO_11493 [Haloplasma contractile SSD-17B]
Length = 255
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 15/149 (10%)
Query: 127 GGYPQAERCRLSVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGY AER R + P +T +I V I N + +H + LGS++ + R
Sbjct: 59 GGYEDAERKRCFIC-PSYMTIYDEIFDVKCYKIEYNKRYVDLNHQNVLGSLMALKVDRSL 117
Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYE-----PPRTKS 239
GDII F V E+ + ++T + VG + P+ +Y+ + K
Sbjct: 118 FGDIIFDEHDDCYFFVSKEIENLILTEFKTVG-------KYPISLKDYQGKVNYRKKYKL 170
Query: 240 FKTIEASLRVDALASAGFKLSRSKLVNLI 268
+ I +S+R+D + S+ +SR++ LI
Sbjct: 171 REVIVSSIRLDTVISSVLNVSRNQASELI 199
>gi|315613570|ref|ZP_07888477.1| S4 domain-containing protein YlmH [Streptococcus sanguinis ATCC
49296]
gi|315314261|gb|EFU62306.1| S4 domain-containing protein YlmH [Streptococcus sanguinis ATCC
49296]
Length = 263
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 2/123 (1%)
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLIT 210
+A L I F+ SHG LG+I+ GI R+ GDI++ EK AQ V +
Sbjct: 90 MALLEICYPSKFEQLSHGKILGTIINQLGIDRKLFGDILV-DEKRAQIFVNRDFIPLFQD 148
Query: 211 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRY 270
+ K+G + VS P + + + +S R+DAL S+ KLSR++ LI
Sbjct: 149 GIRKIGRLPVSLEECPFTDRIISKIDYREREILVSSFRLDALLSSALKLSRNQTSQLIEK 208
Query: 271 SSL 273
S+
Sbjct: 209 KSV 211
>gi|294501007|ref|YP_003564707.1| RNA binding protein [Bacillus megaterium QM B1551]
gi|294350944|gb|ADE71273.1| RNA binding protein [Bacillus megaterium QM B1551]
Length = 257
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 78/183 (42%), Gaps = 10/183 (5%)
Query: 94 RREVLH------SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 147
+ +VLH +DFL P + + +V+ GG P AER R ++ +P+
Sbjct: 22 KEDVLHQYSPKLTDFLDPREQQIVTAIVGTEGEVQVSFDGGQPFAERKR-ALLYPDYYVP 80
Query: 148 DPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELA 205
+ + N+ F H LGS + G+ R K GDI++ G+ Q + E++
Sbjct: 81 ESEDFQLHMYELNYPKKFVTIEHPQVLGSAMSLGLRRSKFGDILVAGD-DIQLVAAEEIS 139
Query: 206 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 265
Y+ +L +G VS + I L +S+R+D L S LSR K+
Sbjct: 140 SYIEMNLTSIGKAKVSLSSIQREQLHVVKEELIEHVYTVSSMRLDVLLSTIHNLSRQKVQ 199
Query: 266 NLI 268
I
Sbjct: 200 PFI 202
>gi|389815970|ref|ZP_10207207.1| hypothetical protein A1A1_04062 [Planococcus antarcticus DSM 14505]
gi|388465464|gb|EIM07781.1| hypothetical protein A1A1_04062 [Planococcus antarcticus DSM 14505]
Length = 261
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 81/176 (46%), Gaps = 14/176 (7%)
Query: 100 SDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAAL 155
+DFL P + E++M +DV+ ++ G + AER R L + E D I
Sbjct: 35 TDFLDPRQRFIVEAVMGS---SDVEMMSSGVFKNAERQRVLLYPSYFEPQQEDFSI-TVF 90
Query: 156 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 215
+ F H D LGS++ G+ R K GDI + E+ Q V+ E++ YL ++
Sbjct: 91 ELKYPSKFVNLRHPDILGSLMSLGLDRSKFGDIRIDNER-VQLAVMNEISPYLESNFISA 149
Query: 216 GNVSV---SCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
V + T I L E +S+ +S+R+D + S+ + +SR K LI
Sbjct: 150 AKVKIQLNEVTEIEQLIDTSEEWTEESYTV--SSMRLDTVMSSVYNISRQKASALI 203
>gi|386714188|ref|YP_006180511.1| hypothetical protein HBHAL_2889 [Halobacillus halophilus DSM 2266]
gi|384073744|emb|CCG45237.1| conserved hypothetical protein [Halobacillus halophilus DSM 2266]
Length = 257
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 4/166 (2%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
SDFL P + D GG QAER R + + + D + L +
Sbjct: 34 SDFLNPREQDIVKAVMGNHPDFNFGLSGGKDQAERKRAIIAPEYEIIEEEDYQLTMLEAS 93
Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 218
F H D LG+ + GI REK+GD++++ + Q + E++DY+ + V
Sbjct: 94 YPAKFVTLEHPDVLGAFMSLGIRREKLGDLVVK-DGVIQIITDQEISDYIRMNFTGVKRA 152
Query: 219 SVSCTRIPL-LALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 263
+V+ PL LE E T+ +SLR+D L + +SR K
Sbjct: 153 TVNFEEKPLSQMLESEETWVMKNTTV-SSLRLDVLVKEIYGMSRKK 197
>gi|256545129|ref|ZP_05472495.1| YlmH protein [Anaerococcus vaginalis ATCC 51170]
gi|256399170|gb|EEU12781.1| YlmH protein [Anaerococcus vaginalis ATCC 51170]
Length = 255
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 95/197 (48%), Gaps = 16/197 (8%)
Query: 72 VGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQ 131
V DK+ +K + + ++ R+ + S FL P + + + K+ +++ V
Sbjct: 10 VEDKSVKANIKKAISLLEKSFYTRKEVSSFFLNPFEI-SVLNDIAKINNIEIVFLSCNES 68
Query: 132 AERCRLSVGHPEALTSDP-DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
+ER ++ V +P + + D ++ L N H D LG++L G+ R IGDI +
Sbjct: 69 SER-QIFVANPYSNEINTRDYISVLKFKKN----NIKHPDVLGALLNLGLERNDIGDIYV 123
Query: 191 QGEKGAQFLVVPELADYLITSLEKVGN--VSVSCTRIPLLALEYEPPRTKSFKT--IEAS 246
G+ +F+V+ + D++ +L K+ N V++ + +L L P+ + +S
Sbjct: 124 -GDDICEFVVLNKDKDFVKFNLSKIKNERVNIDFKKDNILNL----PKIDYIENRGFVSS 178
Query: 247 LRVDALASAGFKLSRSK 263
LR+D + S LSRSK
Sbjct: 179 LRLDNIVSEFINLSRSK 195
>gi|419818690|ref|ZP_14342638.1| hypothetical protein GMD4S_09320, partial [Streptococcus sp. GMD4S]
gi|404461223|gb|EKA07199.1| hypothetical protein GMD4S_09320, partial [Streptococcus sp. GMD4S]
Length = 281
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 2/134 (1%)
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLIT 210
+A L I F+ SHG LG+I+ GI R+ GDI++ EK AQ V +
Sbjct: 108 MALLEICYPSKFEQLSHGKILGTIINQLGIDRKLFGDILVD-EKRAQIFVNRDFIPLFQD 166
Query: 211 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRY 270
+ K+G + VS P + + + +S R+DAL S+ KLSR++ LI
Sbjct: 167 GIRKIGRLPVSLEECPFTDRILSKIDYREREILVSSFRLDALLSSALKLSRNQASQLIEK 226
Query: 271 SSLASLVQISAKAS 284
S+ + K+
Sbjct: 227 KSVQVNYHVVEKSD 240
>gi|256846326|ref|ZP_05551783.1| RNA binding protein [Fusobacterium sp. 3_1_36A2]
gi|256718095|gb|EEU31651.1| RNA binding protein [Fusobacterium sp. 3_1_36A2]
Length = 241
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 103/214 (48%), Gaps = 23/214 (10%)
Query: 78 IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
+E++++ +++A + + V++S+ P S + K + +K +G E+ L
Sbjct: 5 LEKIENYIKLAEKTDT---VIYSNQFFPV----SQLNNLKYSGMKFSFKGLNEDCEKKLL 57
Query: 138 SVGHPEALTSD----PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGE 193
+V +PE T D P V I F H +LG+IL GI RE +GD+I++
Sbjct: 58 AV-YPEYFTEDYLYFP--VKYFKIIKKSKFINLEHKHYLGNILSLGIKREILGDLIVKNN 114
Query: 194 KGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVD 250
+ +++ + D+L +L ++ + + I E + P+ + FK + +SLR+D
Sbjct: 115 ECYG-IILENMFDFLKENLLRINSSPIEIIEIT----ERDVPQNE-FKELNIRLSSLRLD 168
Query: 251 ALASAGFKLSRSKLVNLIRYSSLASLVQISAKAS 284
+L S LSR+ VN I ++ +I + S
Sbjct: 169 SLVSELTNLSRALSVNYIDLGNVQVNYEIQREKS 202
>gi|331269359|ref|YP_004395851.1| YlmH protein [Clostridium botulinum BKT015925]
gi|329125909|gb|AEB75854.1| YlmH protein, putative [Clostridium botulinum BKT015925]
Length = 261
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 90/180 (50%), Gaps = 14/180 (7%)
Query: 97 VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSV---GHPEALTSDPDIVA 153
+ ++F +P + K+ ++ L K G + +++R +S+ + + + P V
Sbjct: 35 IYFNEFYSPTIWKK-LLNLSSKIRCKIGTYGIFQESDRRAISILSNYDDDEMYNYP--VK 91
Query: 154 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
L+I F H DFLG+++ GI REK+GD+I+ E V ++A+++ +L
Sbjct: 92 LLNIINMSAFSKLKHSDFLGALMSLGIKREKLGDLIVD-EDECYVPVCSDIAEFIQNNLT 150
Query: 214 KVGNVSVSCTRIPLLALEYE---PPRTKSFKT-IEASLRVDALASAGFKLSRSKLVNLIR 269
++G S ++ +L E P KT I +S R+D++ +A +SRS ++I+
Sbjct: 151 RIGK---SPCKVKILDHYDENQIPEHKFQVKTIIVSSCRLDSIVAALGGISRSNSEDMIK 207
>gi|414157071|ref|ZP_11413371.1| hypothetical protein HMPREF9186_01791 [Streptococcus sp. F0442]
gi|410868387|gb|EKS16352.1| hypothetical protein HMPREF9186_01791 [Streptococcus sp. F0442]
Length = 263
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 88/201 (43%), Gaps = 12/201 (5%)
Query: 74 DKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA---DVKAVAQGGYP 130
+++ E + +E++ R R V + FL P + L +A ++ A
Sbjct: 11 NRDDHEFIDRCIELSERVIERYSVEVTGFLNP----HQVAILRNVASSYQLQVFASSDEQ 66
Query: 131 QAERCRLSVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGD 187
+ E ++ VG P+ DP+ +A L + F +H LG+I+ G+ R+ GD
Sbjct: 67 KMEYAKVIVG-PDYYQLDPNDFDLALLEMVYASKFHHLTHSQVLGTIVHQLGVERKSFGD 125
Query: 188 IILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASL 247
I L + Q V Y + ++K+ V V +PL ++ + +S
Sbjct: 126 I-LTSDGKIQVFVERRFVPYFMDHIQKISRVPVKLKEVPLSQQLVIEEDSQHRDILVSSF 184
Query: 248 RVDALASAGFKLSRSKLVNLI 268
R+D + +A FKLSRS+ L+
Sbjct: 185 RLDKVIAATFKLSRSQASQLV 205
>gi|419814631|ref|ZP_14339401.1| hypothetical protein GMD2S_05075 [Streptococcus sp. GMD2S]
gi|404471572|gb|EKA16081.1| hypothetical protein GMD2S_05075 [Streptococcus sp. GMD2S]
Length = 263
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 2/134 (1%)
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLIT 210
+A L I F+ SHG LG+I+ GI R+ GDI++ EK AQ V +
Sbjct: 90 MALLEICYPSKFEQLSHGKILGTIINQLGIDRKLFGDILVD-EKRAQIFVNRDFIPLFQD 148
Query: 211 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRY 270
+ K+G + VS P + + + +S R+DAL S+ KLSR++ LI
Sbjct: 149 GIRKIGRLPVSLEERPFTDRILSKIDYREREILVSSFRLDALLSSALKLSRNQASQLIEK 208
Query: 271 SSLASLVQISAKAS 284
S+ + K+
Sbjct: 209 KSVQVNYHVVEKSD 222
>gi|151221313|ref|YP_001332135.1| hypothetical protein NWMN_1101 [Staphylococcus aureus subsp. aureus
str. Newman]
gi|150374113|dbj|BAF67373.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
str. Newman]
Length = 268
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 6/145 (4%)
Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
D+ GG P AER R +S + E SD ++ + + I F H LG+++
Sbjct: 66 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFEL-SLMQIDYPEKFVTLKHQHILGTLMS 123
Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 124 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181
Query: 238 KSFKTIEASLRVDALASAGFKLSRS 262
K+ +SLR+D + + SR+
Sbjct: 182 KNESATVSSLRLDVVIKYLIRKSRT 206
>gi|387879109|ref|YP_006309412.1| hypothetical protein Spaf_0590 [Streptococcus parasanguinis FW213]
gi|419800611|ref|ZP_14325884.1| S4 domain protein [Streptococcus parasanguinis F0449]
gi|385694545|gb|EIG25140.1| S4 domain protein [Streptococcus parasanguinis F0449]
gi|386792564|gb|AFJ25599.1| hypothetical protein Spaf_0590 [Streptococcus parasanguinis FW213]
Length = 263
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 82/196 (41%), Gaps = 12/196 (6%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERC 135
E + +E++ R R V + FL P + L +A ++ A E
Sbjct: 16 EFIDRCIELSERVMERYSVEVTGFLNP----HQVTILRNVAASYQLQVFASSDEQNMEYA 71
Query: 136 RLSVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQG 192
++ V P+ DP+ +A L + F SH LG+I+ G+ R+ GDI L
Sbjct: 72 KVIVA-PDYYQLDPNDFDLALLEMVYASKFHHLSHSQVLGTIVHQLGVERKSFGDI-LTS 129
Query: 193 EKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDAL 252
+ Q V Y + ++K+ V V +PL ++ + +S R+D +
Sbjct: 130 DGKIQVFVEQRFVHYFMDHIQKISRVPVRLREVPLSEQMIVEEESQQRDILVSSFRLDKV 189
Query: 253 ASAGFKLSRSKLVNLI 268
+ FKLSRS+ LI
Sbjct: 190 IAGTFKLSRSQASQLI 205
>gi|227499566|ref|ZP_03929673.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
gi|227218325|gb|EEI83579.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
Length = 255
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 8/154 (5%)
Query: 69 LKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGG 128
L + DK+ +K + + RA R L S FL P +E + ++ K ++ GG
Sbjct: 7 LNFIKDKSKKSTIKKAISILERAFYSRNELSSFFL-DPYEREVIESIAKKNNIDLTFIGG 65
Query: 129 YPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDI 188
+ +AER + + D + LS F + H D LG+++ G+ RE IGDI
Sbjct: 66 HSEAERKIFVANYYYLPLNLHDYIEILS----FNCKDIKHPDVLGALISLGLDRESIGDI 121
Query: 189 -ILQGEKGAQFLVVPELADYLITSLEKVGNVSVS 221
+L G+ +F ++ A+++ +L K+ N S+
Sbjct: 122 SVLDGK--VEFALLASEANFVKYNLSKIKNESID 153
>gi|406659214|ref|ZP_11067352.1| S4 domain-containing protein YlmH [Streptococcus iniae 9117]
gi|405577323|gb|EKB51471.1| S4 domain-containing protein YlmH [Streptococcus iniae 9117]
Length = 263
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 93/197 (47%), Gaps = 15/197 (7%)
Query: 78 IEEVKHILEMARRASSRREVLH-SDFLTPPVLKESMMALEKLAD--VKAVAQGGYPQAER 134
IE++K +++ + VLH +DFL P ++ +A +A + + Q+E
Sbjct: 19 IEKIKDVIQKVDQTY----VLHVTDFLNP---RQITIAKNVVAHSGLHCYSSTDSFQSEY 71
Query: 135 CRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQG 192
RL + + D ++ L + + F H LG+++ GI R IGDI+++
Sbjct: 72 GRLIIAPDYYQLDEADFEISLLEMRYHAKFNQLKHSQILGTLINELGIKRSLIGDILVE- 130
Query: 193 EKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE-ASLRVDA 251
E AQ +V L Y + ++ ++ SVS I + + P S + +SLR+D
Sbjct: 131 EGYAQLMVCQHLLSYFLGNITRIARTSVSLKEIDF-SKQIIPKMQASMVDVTVSSLRIDR 189
Query: 252 LASAGFKLSRSKLVNLI 268
L ++ KLSR + + LI
Sbjct: 190 LMASILKLSRHQAIKLI 206
>gi|419780730|ref|ZP_14306571.1| S4 domain protein [Streptococcus oralis SK100]
gi|383184903|gb|EIC77408.1| S4 domain protein [Streptococcus oralis SK100]
Length = 263
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 2/123 (1%)
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLIT 210
+A L I F+ SHG LG+I+ GI R+ GDI++ EK AQ V +
Sbjct: 90 MALLEICYPSKFEQLSHGKILGTIINQLGIDRKLFGDILV-DEKRAQIFVNRDFIPLFQD 148
Query: 211 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRY 270
+ K+G + VS P + + + +S R+DAL S+ KLSR++ LI
Sbjct: 149 GIRKIGRLPVSLEERPFTDRILSKIDYREREVLVSSFRLDALLSSALKLSRNQASQLIEK 208
Query: 271 SSL 273
S+
Sbjct: 209 KSV 211
>gi|322375671|ref|ZP_08050183.1| YlmH protein [Streptococcus sp. C300]
gi|321279379|gb|EFX56420.1| YlmH protein [Streptococcus sp. C300]
Length = 263
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 2/123 (1%)
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLIT 210
+A L I F+ SHG LG+I+ GI R+ GDI++ EK AQ V +
Sbjct: 90 MALLEICYPSKFEQLSHGKILGTIINQLGIDRKLFGDILV-DEKRAQIFVNRDFIPLFQD 148
Query: 211 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRY 270
+ K+G + VS P + + + +S R+DAL S+ KLSR++ LI
Sbjct: 149 GIRKIGRLPVSLEERPFTDRILSKIDYREREILVSSFRLDALLSSALKLSRNQTSQLIEK 208
Query: 271 SSL 273
S+
Sbjct: 209 KSV 211
>gi|258423765|ref|ZP_05686651.1| conserved hypothetical protein [Staphylococcus aureus A9635]
gi|418307404|ref|ZP_12919117.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21194]
gi|257845997|gb|EEV70025.1| conserved hypothetical protein [Staphylococcus aureus A9635]
gi|365245671|gb|EHM86287.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21194]
Length = 268
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 6/151 (3%)
Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
D+ GG P ER R +S + E SD D+ + I F H LG+++
Sbjct: 66 DLNVSFYGG-PNVERKRAIISPNYYEPKESDFDL-TLMEIDYPEKFVTLKHQHILGTLMS 123
Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 124 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181
Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K +SLR+D + + SR+ LI
Sbjct: 182 KIESATVSSLRLDVVIKEMIRKSRTIAKQLI 212
>gi|418888981|ref|ZP_13443117.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1524]
gi|377754491|gb|EHT78400.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1524]
Length = 259
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 6/151 (3%)
Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
D+ GG P ER R +S + E SD D+ + I F H LG+++
Sbjct: 57 DLNVSFYGG-PNVERKRAIISPNYYEPKESDFDL-TLMEIDYPEKFVTLKHQHILGTLMS 114
Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 115 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 172
Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K +SLR+D + + SR+ LI
Sbjct: 173 KIESATVSSLRLDVVIKEMIRKSRTIAKQLI 203
>gi|402574193|ref|YP_006623536.1| hypothetical protein Desmer_3829 [Desulfosporosinus meridiei DSM
13257]
gi|402255390|gb|AFQ45665.1| hypothetical protein Desmer_3829 [Desulfosporosinus meridiei DSM
13257]
Length = 265
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 97/216 (44%), Gaps = 22/216 (10%)
Query: 54 IRHLIQAVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLK--ES 111
+RHLI +LK DK A E H+L+ S+ + FL+ + ES
Sbjct: 1 MRHLIDR------SVLKYWVDKEARLEAAHLLDQVNLVLSKEFQQVTPFLSFAMRDWIES 54
Query: 112 MMALEKLADVKAVAQGGYPQAERCRLSVG-HPEALTSDPDIVAALSITGNFGFQPCSHGD 170
++ E LA +A+GG P AER R+ +G + + + ++ LS+ H
Sbjct: 55 VLRKEHLA---YLAEGGLPDAERVRIIMGAKGDIMKPEQAEISLLSVRATNLRAKLEHHQ 111
Query: 171 FLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG----NVSVSCTRIP 226
LGS++G G+ R+ GD I G+ G E+ L+ + G NVS+S IP
Sbjct: 112 ILGSLMGLGLRRDLFGD-IQAGQSGFYVATTLEIVPVLLNQWTEAGREKINVSIS-EGIP 169
Query: 227 LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRS 262
L P + + S R+DA+ + F +SRS
Sbjct: 170 DLL----PGLGEERRITVNSSRLDAVIANAFGVSRS 201
>gi|403667697|ref|ZP_10932997.1| hypothetical protein KJC8E_02927 [Kurthia sp. JC8E]
Length = 263
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 78/174 (44%), Gaps = 9/174 (5%)
Query: 101 DFLTPPVLKESMMALEKLADVKAVAQGGYP-QAERCRLSVGHPEALT--SDPDIVAALSI 157
DFL P +K + K DV G + ER R + +P + D + L +
Sbjct: 36 DFLDPRQVKIIEAIIGKNEDVHFSVDGAFGGNVERVR-GMLYPSYIVPVKDDFQLCVLGV 94
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
F H D LG++L GI R K GDI + E QF+V E+ADY+ +L +G
Sbjct: 95 RYASKFVQLKHPDVLGALLHLGIDRTKFGDIRIDSEM-VQFVVAQEVADYVRANLTTIGK 153
Query: 218 VSVSCTRIPLLAL--EYEPPRTKSFKTIEASLRVDALASAGF-KLSRSKLVNLI 268
+ + L E P +S T +SLR+D + ++ + +SR K LI
Sbjct: 154 SKATIIEVSEQQLIGESNDPWLESVVTT-SSLRLDTVIASCYPSISRQKAAMLI 206
>gi|417892121|ref|ZP_12536178.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21200]
gi|341851407|gb|EGS92336.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21200]
Length = 259
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 6/151 (3%)
Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
D+ GG P ER R +S + E SD D+ + I F H LG+++
Sbjct: 57 DLNVSFYGG-PNVERKRAIISPNYYEPKESDFDL-TLMEIDYPEKFVTLKHQHILGTLMS 114
Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 115 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 172
Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K +SLR+D + + SR+ LI
Sbjct: 173 KIESATVSSLRLDVVIKEMIRKSRTIAKQLI 203
>gi|386319543|ref|YP_006015706.1| RNA-binding S4 domain-containing protein [Staphylococcus
pseudintermedius ED99]
gi|323464714|gb|ADX76867.1| RNA-binding S4 domain protein [Staphylococcus pseudintermedius
ED99]
Length = 256
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 83/185 (44%), Gaps = 4/185 (2%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
E++ ++L+ R+A ++ + + FL P + + D+ GG AERCR
Sbjct: 13 EQIDYLLDKVRQAETQYAPVLTYFLDPRGQYMLEVIVGSFNDLHVSFDGG-RDAERCRAV 71
Query: 139 VGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
+ S D + + I F H LG+++ GI RE++GDII+ + Q
Sbjct: 72 IAPSYYEPSRDDFELTLIEIDYPTKFVTLQHQHVLGTLMSLGIEREQVGDIIVA--ERIQ 129
Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
F++ +L Y++ L ++ ++ IP + ++ + ++ R+D +
Sbjct: 130 FVLTKQLESYIMLELTRIKGATIKLHVIPFEDMIQSEEYWETHEATVSATRLDVVLKEMI 189
Query: 258 KLSRS 262
+ SR+
Sbjct: 190 RKSRT 194
>gi|326693772|ref|ZP_08230777.1| S4 domain-containing protein [Leuconostoc argentinum KCTC 3773]
Length = 263
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
+A L I F H LG+++ GI R +GDI+ Q ++ Q +V ++ Y+ +
Sbjct: 92 LAVLEINYPTKFTELHHAAILGALMHAGIKRTVVGDILGQDQRW-QIIVDSKMLTYIQQT 150
Query: 212 LEKVGNVSVSCTRIPLL-ALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+ +G V ++ +PL A+ + ++F T+ SLR+DA+ +A F + RS LI
Sbjct: 151 VTMIGRVKITWMVLPLTQAITAQDDWEETF-TLLPSLRLDAVIAATFDIPRSLAKTLI 207
>gi|169335053|ref|ZP_02862246.1| hypothetical protein ANASTE_01459 [Anaerofustis stercorihominis DSM
17244]
gi|169257791|gb|EDS71757.1| S4 domain protein [Anaerofustis stercorihominis DSM 17244]
Length = 247
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 168 HGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPL 227
H D LGSIL + R K+GDI + + + V ++++L++ L K+G +V+ +
Sbjct: 93 HQDVLGSILSLSVDRSKVGDINILDDH-IEIFVYDTISEFLVSELTKIGGNNVTFYECDI 151
Query: 228 LALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 263
P+ K I S+R+DA+ FKLSR++
Sbjct: 152 NEASVIEPKFKELNIIVPSMRLDAVIGNIFKLSRNE 187
>gi|340751680|ref|ZP_08688490.1| RNA binding protein [Fusobacterium mortiferum ATCC 9817]
gi|340562105|gb|EEO35691.2| RNA binding protein [Fusobacterium mortiferum ATCC 9817]
Length = 257
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 13/123 (10%)
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
V +T F+ H +LG+I+ GI RE +GD+I++ + +V E+ D+L+ +
Sbjct: 89 VKYFKVTNRSKFKELEHKHYLGTIMSLGIKRELMGDLIVEDD-SCYGIVSEEIFDFLVDN 147
Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE-----ASLRVDALASAGFKLSRSKLVN 266
L++VG R P+ E + S K E +S+R+D + S SRSK +
Sbjct: 148 LKEVG-------RNPVTVEEVNRSQVPSLKFEELIDSVSSVRLDNIVSVMINNSRSKGLE 200
Query: 267 LIR 269
LI
Sbjct: 201 LIE 203
>gi|227877329|ref|ZP_03995402.1| ribosomal protein S4e [Lactobacillus crispatus JV-V01]
gi|256848735|ref|ZP_05554169.1| cell-division protein [Lactobacillus crispatus MV-1A-US]
gi|227863185|gb|EEJ70631.1| ribosomal protein S4e [Lactobacillus crispatus JV-V01]
gi|256714274|gb|EEU29261.1| cell-division protein [Lactobacillus crispatus MV-1A-US]
Length = 266
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 81/187 (43%), Gaps = 10/187 (5%)
Query: 94 RREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD--I 151
+ E + +DFL P K +++ D GGYP AE+ R+ + E L P
Sbjct: 34 KHEPILTDFLDPG--KRAILRTIVGNDAFVQEYGGYPNAEKKRVYLSE-EWLNLRPSDYQ 90
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
+ I F ++ LG++ +GI GDII + QF E+ ++
Sbjct: 91 IQPYEIEYPQKFTKINYSVILGTLANSGIDTSIFGDIINDNQGKWQFFTKKEITEFFEEQ 150
Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFK--TIEASLRVDALASAGFKLSRSKLVNLIR 269
++++G V P+ E P S + I AS+R+DA+ S + SR ++ +I
Sbjct: 151 IDRIGRAKVKLR--PISFKEVLVPEDDSIEKTKIVASMRIDAVLSGISRQSRGQIQKMIN 208
Query: 270 YSSLASL 276
S L L
Sbjct: 209 -SQLVKL 214
>gi|225018391|ref|ZP_03707583.1| hypothetical protein CLOSTMETH_02338 [Clostridium methylpentosum
DSM 5476]
gi|224948809|gb|EEG30018.1| hypothetical protein CLOSTMETH_02338 [Clostridium methylpentosum
DSM 5476]
Length = 249
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 64/123 (52%), Gaps = 13/123 (10%)
Query: 148 DPDI----VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE 203
+PD+ +A+L+ G+ SH DFLGS++G I R+ +GD I GE F V
Sbjct: 73 EPDLAEFPIASLTAEYPVGY-ALSHRDFLGSLMGLQIKRDAVGD-IFPGEGWCVFFVRES 130
Query: 204 LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVDALASAGFKLS 260
+ + ++ L KVG V V +P + +E P F+ + ASLR+D + + +LS
Sbjct: 131 VREVVLEQLTKVGRVGVRI--VP--GIRHELPSHAKFEPVSGTVASLRLDCVVALLSRLS 186
Query: 261 RSK 263
R K
Sbjct: 187 REK 189
>gi|429761447|ref|ZP_19293872.1| S4 domain protein [Anaerostipes hadrus DSM 3319]
gi|429183700|gb|EKY24741.1| S4 domain protein [Anaerostipes hadrus DSM 3319]
Length = 251
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 80/184 (43%), Gaps = 5/184 (2%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
K ++E+ +A ++ ++ FL ++LA + GG+ R + G
Sbjct: 9 KRLMELCEKAYNQNIYTYTHFLNEYEQSIYQDMKQELAYAHPILVGGHKYFTRAVVMFGS 68
Query: 142 PEALTSD---PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
E P + A +S + + SH D+LG+++ GI R IGDI++ G + A
Sbjct: 69 EELFGYQGEVPVVCARISPVFDKFAEELSHRDYLGALMNLGIERHLIGDILIDG-RYAYI 127
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
+ + + L++V + V + Y + K + AS+R+D L S F
Sbjct: 128 FCMEHIIGVIKEQLDQVRHTRVFVEEVSWEETGY-VQKYKKKEGFVASMRLDVLVSQAFS 186
Query: 259 LSRS 262
LSR+
Sbjct: 187 LSRN 190
>gi|225868958|ref|YP_002744906.1| hypothetical protein SZO_13920 [Streptococcus equi subsp.
zooepidemicus]
gi|225702234|emb|CAW99980.1| conserved hypothetical protein [Streptococcus equi subsp.
zooepidemicus]
Length = 264
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 98/213 (46%), Gaps = 17/213 (7%)
Query: 81 VKHILEMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
++ +L++ R + + +DFL P +LK + A +++ + Y +E R+
Sbjct: 19 IERMLDLIARVEANYLLEVTDFLNPREVTILKGLVAA----TNLQCFSSTDYYPSEYGRV 74
Query: 138 SVGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGE 193
V P+ SD D+ A + +T N F +H LG+++ GI R +GDI + E
Sbjct: 75 IVA-PDYYCLDKSDFDL-ALIEVTYNAKFNQLTHAQILGTLINELGIKRALLGDIFV--E 130
Query: 194 KG-AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE-ASLRVDA 251
G AQ ++ +L Y + ++ K+ V I L L + I +SLRVD
Sbjct: 131 IGHAQVMINRQLLSYCLGTIAKIARARVKLKEIDLDQLLNLTTNQQVLADIMVSSLRVDR 190
Query: 252 LASAGFKLSRSKLVNLIRYSSLASLVQISAKAS 284
L + K SR++ + L+ + Q+ KAS
Sbjct: 191 LIATVLKQSRNQAIRLVEAGKVKVNYQLVTKAS 223
>gi|415683779|ref|ZP_11448981.1| hypothetical protein CGSSa00_05208 [Staphylococcus aureus subsp.
aureus CGS00]
gi|315194077|gb|EFU24470.1| hypothetical protein CGSSa00_05208 [Staphylococcus aureus subsp.
aureus CGS00]
Length = 268
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 6/151 (3%)
Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
D+ GG P AER R +S + E SD D+ + I F H LG+++
Sbjct: 66 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFDL-TLMEIDYPEKFVTLKHQHILGTLMS 123
Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
GI RE++GDII+ + QF++ L +++ L+ + SV IP+ +
Sbjct: 124 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQCIKGASVKLYTIPVTDMIQSNENW 181
Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K +SLR+D + + SR+ LI
Sbjct: 182 KIESATVSSLRLDVVIKEMIRKSRTIAKQLI 212
>gi|322392783|ref|ZP_08066241.1| S4 domain-containing protein YlmH [Streptococcus peroris ATCC
700780]
gi|321144361|gb|EFX39764.1| S4 domain-containing protein YlmH [Streptococcus peroris ATCC
700780]
Length = 261
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 10/183 (5%)
Query: 103 LTPPVLKESMMALEKLA---DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
LTP + + LE L ++K + Y +E R+ + S D +A L I
Sbjct: 35 LTPFINPHQVYILETLGNNREIKTFSSTSYVPSEYARVLLAPDYFAPSLEDFEMALLEIE 94
Query: 159 GNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
+ FQ +H LG++L GI R+ GDI++ E+ AQ +V ++K+
Sbjct: 95 YSSKFQQLTHSKILGTVLNRLGIDRKLFGDILV-TEQKAQIIVDQRFTTLFQDGIQKISK 153
Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSLASLV 277
+ VS + + + + +SLR+D+ S+ KLSRS+ NL+ LV
Sbjct: 154 LPVSLVERSFSDIIKSKDGYQEREVLVSSLRLDSFLSSILKLSRSQTSNLVE----KKLV 209
Query: 278 QIS 280
Q++
Sbjct: 210 QVN 212
>gi|225870034|ref|YP_002745981.1| hypothetical protein SEQ_0625 [Streptococcus equi subsp. equi 4047]
gi|225699438|emb|CAW92932.1| conserved hypothetical protein [Streptococcus equi subsp. equi
4047]
Length = 264
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 94/211 (44%), Gaps = 13/211 (6%)
Query: 81 VKHILEMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
++ +L++ R + + +DFL P +LK + A +++ + Y +E R+
Sbjct: 19 IERMLDLIARVEANYLLEVTDFLNPREVTILKGLVAA----TNLQCFSSTDYYPSEYGRV 74
Query: 138 SVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG 195
V D +A + +T N F +H LG+++ GI R +GDI + E G
Sbjct: 75 IVAPDYYCLDKADFDLALIEVTYNAKFNQLTHAQILGTLINELGIKRALLGDIFV--EIG 132
Query: 196 -AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE-ASLRVDALA 253
AQ ++ +L Y + ++ K+ V I L L + I +SLRVD L
Sbjct: 133 HAQVMINRQLLSYCLGTIAKIAKARVKLKEIDLDQLLNLTANQQVLTDIMVSSLRVDRLI 192
Query: 254 SAGFKLSRSKLVNLIRYSSLASLVQISAKAS 284
+ K SR++ + L+ + Q+ KAS
Sbjct: 193 ATVLKQSRNQAIRLVEAGKVKVNYQLVTKAS 223
>gi|414563542|ref|YP_006042503.1| conserved hypothetical protein [Streptococcus equi subsp.
zooepidemicus ATCC 35246]
gi|338846607|gb|AEJ24819.1| conserved hypothetical protein [Streptococcus equi subsp.
zooepidemicus ATCC 35246]
Length = 264
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 94/211 (44%), Gaps = 13/211 (6%)
Query: 81 VKHILEMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
++ +L++ R + + +DFL P +LK + A +++ + Y +E R+
Sbjct: 19 IERMLDLIARVEANYLLEVTDFLNPREVTILKGLVAA----TNLQCFSSTDYYPSEYGRV 74
Query: 138 SVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG 195
V D +A + +T N F +H LG+++ GI R +GDI + E G
Sbjct: 75 IVAPDYYCLDKADFDLALIEVTYNAKFNQLTHAQILGTLINELGIKRALLGDIFV--EIG 132
Query: 196 -AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE-ASLRVDALA 253
AQ ++ +L Y + ++ K+ V I L L + I +SLRVD L
Sbjct: 133 HAQVMINRQLLSYCLGTIAKIARARVKLKEIDLDQLLNLTANQQVLTDIMVSSLRVDRLI 192
Query: 254 SAGFKLSRSKLVNLIRYSSLASLVQISAKAS 284
+ K SR++ + L+ + Q+ KAS
Sbjct: 193 ATVLKQSRNQAIRLVEAGKVKVNYQLVTKAS 223
>gi|418039120|ref|ZP_12677429.1| hypothetical protein LLCRE1631_02236 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|354692480|gb|EHE92303.1| hypothetical protein LLCRE1631_02236 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
Length = 219
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 4/123 (3%)
Query: 147 SDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELA 205
D DI L I F SH LG+ LG G+ R+++GDII+ K Q V L
Sbjct: 41 EDFDI-CLLEINYASKFVELSHAQVLGTFLGQAGVKRQELGDIIVSDNK-IQVFVSKHLV 98
Query: 206 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 265
+ ++EK+G ++ I L L E + + +LRVD + + FK+SR+
Sbjct: 99 ESF-KAIEKIGRAAIKIQEISLENLVEETDKAVREVVLVDNLRVDKMIAVAFKISRNIAT 157
Query: 266 NLI 268
N++
Sbjct: 158 NML 160
>gi|420185503|ref|ZP_14691595.1| YlmH protein [Staphylococcus epidermidis NIHLM040]
gi|394254489|gb|EJD99458.1| YlmH protein [Staphylococcus epidermidis NIHLM040]
Length = 220
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 5/143 (3%)
Query: 128 GYPQAERCRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKI 185
G P AER R + P P+ ++ F H LG+++ GI R+++
Sbjct: 25 GGPHAERKRAIIA-PLYFKPQPEDFELTLFELHYPKKFVTIQHQHVLGTLMSLGIQRDQL 83
Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
GDII+ GE QF++ +L Y+I+ L ++ SV IP + K T +
Sbjct: 84 GDIIV-GE-DIQFVLTKQLESYIISELTRIKGASVKLNSIPTEDMIQSEENWKVHSTTVS 141
Query: 246 SLRVDALASAGFKLSRSKLVNLI 268
+LR+D + SR+ LI
Sbjct: 142 ALRLDVVLKEMIHKSRNIAQQLI 164
>gi|332708243|ref|ZP_08428225.1| uncharacterized S4-like domain protein [Moorea producens 3L]
gi|332352967|gb|EGJ32525.1| uncharacterized S4-like domain protein [Moorea producens 3L]
Length = 182
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 219 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
+V RI L L+ + P+ K T EAS+R+DA+ASAGF +SRSK+V+ I
Sbjct: 79 TVKTQRIDLSELKVKEPKKKLRTTTEASMRLDAIASAGFGMSRSKMVDFI 128
>gi|322389018|ref|ZP_08062588.1| S4 domain-containing protein YlmH [Streptococcus parasanguinis ATCC
903]
gi|321144323|gb|EFX39731.1| S4 domain-containing protein YlmH [Streptococcus parasanguinis ATCC
903]
Length = 263
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 83/196 (42%), Gaps = 12/196 (6%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERC 135
E + +E++ R R V + FL P + L +A ++ A + E
Sbjct: 16 EFIDRCIELSERVVERYSVEVTGFLNP----HQVTILRNVAASYQLQVFASSDEQKMEYA 71
Query: 136 RLSVGHPEALTSDP-DI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQG 192
++ V P+ DP D +A L + F +H LG+I+ G+ R+ GDI L
Sbjct: 72 KVIVA-PDYYQLDPSDFDLALLEMVYASKFHHLTHSQVLGTIVHQLGVERKSFGDI-LTS 129
Query: 193 EKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDAL 252
E Q V Y + ++K+ V V +PL ++ + +S R+D +
Sbjct: 130 EGKIQVFVEQRFVAYFMDHIQKISRVPVKLREVPLSEQMIVEEESQQRDILVSSYRLDKV 189
Query: 253 ASAGFKLSRSKLVNLI 268
+ FKLSRS+ LI
Sbjct: 190 IAGTFKLSRSQASQLI 205
>gi|302874637|ref|YP_003843270.1| RNA binding protein [Clostridium cellulovorans 743B]
gi|307690751|ref|ZP_07633197.1| RNA binding protein [Clostridium cellulovorans 743B]
gi|302577494|gb|ADL51506.1| RNA binding protein [Clostridium cellulovorans 743B]
Length = 255
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 12/117 (10%)
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVP---ELADYL 208
V L I + FQ H D+LGSI+ GI R K+GD+I+ VP ++A Y+
Sbjct: 86 VKVLLIKTSNKFQRVEHKDYLGSIMSLGIKRSKLGDLIVID----NLCYVPCTEDIASYI 141
Query: 209 ITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTI--EASLRVDALASAGFKLSRSK 263
I S+ K+ N +I +L+ P + + + SLRVD++ S +SRSK
Sbjct: 142 IDSISKIKNTPC---KIEILSSYDNLPEYQYDELVITTTSLRVDSVVSGITGISRSK 195
>gi|418325065|ref|ZP_12936275.1| S4 domain protein [Staphylococcus epidermidis VCU071]
gi|365228971|gb|EHM70143.1| S4 domain protein [Staphylococcus epidermidis VCU071]
Length = 220
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 5/143 (3%)
Query: 128 GYPQAERCRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKI 185
G P AER R + P P+ + F H LG+++ GI R+++
Sbjct: 25 GGPHAERKRAIIA-PLYFKPQPEDFELTLFELQYPKKFVTIQHQHVLGTLMSLGIQRDQL 83
Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
GDII+ GE QF++ +L Y+I+ L ++ SV IP + K T +
Sbjct: 84 GDIIV-GE-DIQFVLTKQLESYIISELTRIKGASVKLNSIPTEDMIQSEENWKVHSTTVS 141
Query: 246 SLRVDALASAGFKLSRSKLVNLI 268
+LR+D + SR+ LI
Sbjct: 142 ALRLDVVLKEMIHKSRNIAQQLI 164
>gi|420209529|ref|ZP_14714966.1| YlmH protein [Staphylococcus epidermidis NIHLM003]
gi|394278976|gb|EJE23288.1| YlmH protein [Staphylococcus epidermidis NIHLM003]
Length = 220
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 5/143 (3%)
Query: 128 GYPQAERCRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKI 185
G P AER R + P P+ + F H LG+++ GI R+++
Sbjct: 25 GGPHAERKRAIIA-PLYFKPQPEDFELTLFELQYPKKFVTIQHQHVLGTLMSLGIQRDQL 83
Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
GDII+ GE QF++ +L Y+I+ L ++ SV IP + K T +
Sbjct: 84 GDIIV-GE-DIQFVLTKQLESYIISELTRIKGASVKLNSIPTKDMIQSEENWKVHSTTVS 141
Query: 246 SLRVDALASAGFKLSRSKLVNLI 268
+LR+D + SR+ LI
Sbjct: 142 ALRLDVVLKEMIHKSRNIAQQLI 164
>gi|417941038|ref|ZP_12584325.1| S4 domain protein [Streptococcus oralis SK313]
gi|343388331|gb|EGV00917.1| S4 domain protein [Streptococcus oralis SK313]
Length = 252
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 87/197 (44%), Gaps = 16/197 (8%)
Query: 85 LEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAV---AQGGYPQAERCRLSVGH 141
LE RR E + LTP + L LA + + G + E R+ + +
Sbjct: 23 LEWIRRV----EDTYVPVLTPFINPHQEQILRVLAGTYGLGCQSSGDFLPTESVRVLL-Y 77
Query: 142 PEALTSDPDI----VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGA 196
P+ +P+I +A L I F+ SHG LG+I+ GI R+ GDI++ EK A
Sbjct: 78 PDYF--EPEISDFEMALLEICYPSKFEQLSHGKILGTIINQLGIDRKLFGDILVD-EKRA 134
Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
Q V + + ++G + VS P + + + +S R+DAL S+
Sbjct: 135 QIFVNRDFIPLFQDGIRRIGRLPVSLEERPFTDRIISKIDFREREILVSSFRLDALLSSA 194
Query: 257 FKLSRSKLVNLIRYSSL 273
KLSR++ LI S+
Sbjct: 195 LKLSRNQTSQLIEKKSV 211
>gi|420169734|ref|ZP_14676312.1| YlmH protein [Staphylococcus epidermidis NIHLM070]
gi|394243034|gb|EJD88408.1| YlmH protein [Staphylococcus epidermidis NIHLM070]
Length = 174
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 5/143 (3%)
Query: 128 GYPQAERCRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKI 185
G P AER R + P P+ + F H LG+++ GI R+++
Sbjct: 25 GGPHAERKRAIIA-PLYFKPQPEDFELTLFELQYPKKFVTIQHQHVLGTLMSLGIQRDQL 83
Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
GDII+ GE QF++ +L Y+I+ L ++ SV IP + K T +
Sbjct: 84 GDIIV-GE-DIQFVLTKQLESYIISELTRIKGASVKLNSIPTKDMIQSEENWKVHSTTVS 141
Query: 246 SLRVDALASAGFKLSRSKLVNLI 268
+LR+D + SR+ LI
Sbjct: 142 ALRLDVVLKEMIHKSRNIAQQLI 164
>gi|339641535|ref|ZP_08662979.1| S4 domain protein [Streptococcus sp. oral taxon 056 str. F0418]
gi|339454804|gb|EGP67419.1| S4 domain protein [Streptococcus sp. oral taxon 056 str. F0418]
Length = 264
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 133 ERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQ 191
E C L V +P F +H G+++ G+ R GDI+++
Sbjct: 90 ELCLLEVNYPSK------------------FHQLTHAQIFGTLMNRLGLDRRTFGDILVE 131
Query: 192 GEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDA 251
E AQ LV + I ++ K+ V V+ I L + + + S + +S+R+D
Sbjct: 132 -ETRAQVLVDKRFTQFFIDNITKIAKVPVTLKEISLSEILHTHESSDSKDILVSSMRLDK 190
Query: 252 LASAGFKLSRSKLVNLI 268
L ++ FKLSR+ LI
Sbjct: 191 LVASTFKLSRNIASQLI 207
>gi|317498471|ref|ZP_07956765.1| S4 domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA]
gi|316894164|gb|EFV16352.1| S4 domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA]
Length = 251
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 80/184 (43%), Gaps = 5/184 (2%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
K ++E+ +A ++ ++ FL ++LA + GG+ R + G
Sbjct: 9 KRLMELCEKAYNQNIYTYTHFLNEYEQSIYQDMKQELAYAHPILVGGHKYFTRAVVMFGS 68
Query: 142 PEALTSD---PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
E P + A +S + + SH D+LG+++ GI R IGDI++ G + A
Sbjct: 69 EELFGYQGEVPVVCARISPVFDKFAEELSHRDYLGALMNLGIERYLIGDILIDG-RYAYI 127
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
+ + + L++V + V + Y + K + AS+R+D L S F
Sbjct: 128 FCMEHIIGVIKEQLDQVRHTRVFVEEVSWEETGY-VQKYKKKEGFVASMRLDVLVSQAFS 186
Query: 259 LSRS 262
LSR+
Sbjct: 187 LSRN 190
>gi|420165270|ref|ZP_14671974.1| YlmH protein [Staphylococcus epidermidis NIHLM088]
gi|394236437|gb|EJD81971.1| YlmH protein [Staphylococcus epidermidis NIHLM088]
Length = 220
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 65/143 (45%), Gaps = 5/143 (3%)
Query: 128 GYPQAERCRLSVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
G P AER R + P P+ ++ + F H LG+++ GI R+++
Sbjct: 25 GGPHAERKRAIIA-PLYFKPQPEDFELSLFELQYPKKFVTIQHQHVLGTLMSLGIQRDQL 83
Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
GDII+ GE QF++ +L Y+I+ L ++ SV IP + K T +
Sbjct: 84 GDIIV-GE-DIQFVLTKQLESYIISELTRIKGASVKLNSIPTEDMIQSEENWKVHSTTVS 141
Query: 246 SLRVDALASAGFKLSRSKLVNLI 268
+LR+D + SR+ LI
Sbjct: 142 ALRLDVVLKEMIHKSRNIAQQLI 164
>gi|293366844|ref|ZP_06613520.1| S4 domain-containing protein YlmH [Staphylococcus epidermidis
M23864:W2(grey)]
gi|417660116|ref|ZP_12309707.1| S4 domain protein [Staphylococcus epidermidis VCU045]
gi|417909732|ref|ZP_12553465.1| S4 domain protein [Staphylococcus epidermidis VCU037]
gi|417910811|ref|ZP_12554527.1| S4 domain protein [Staphylococcus epidermidis VCU105]
gi|418616643|ref|ZP_13179567.1| S4 domain protein [Staphylococcus epidermidis VCU120]
gi|418622161|ref|ZP_13184917.1| S4 domain protein [Staphylococcus epidermidis VCU123]
gi|418628976|ref|ZP_13191492.1| S4 domain protein [Staphylococcus epidermidis VCU127]
gi|420163469|ref|ZP_14670216.1| YlmH protein [Staphylococcus epidermidis NIHLM095]
gi|420167548|ref|ZP_14674200.1| YlmH protein [Staphylococcus epidermidis NIHLM087]
gi|420182861|ref|ZP_14688994.1| YlmH protein [Staphylococcus epidermidis NIHLM049]
gi|420187603|ref|ZP_14693623.1| YlmH protein [Staphylococcus epidermidis NIHLM039]
gi|420194071|ref|ZP_14699900.1| YlmH protein [Staphylococcus epidermidis NIHLM021]
gi|420197083|ref|ZP_14702807.1| YlmH protein [Staphylococcus epidermidis NIHLM020]
gi|420211917|ref|ZP_14717273.1| YlmH protein [Staphylococcus epidermidis NIHLM001]
gi|420214328|ref|ZP_14719607.1| YlmH protein [Staphylococcus epidermidis NIH05005]
gi|420216158|ref|ZP_14721380.1| YlmH protein [Staphylococcus epidermidis NIH05001]
gi|420222017|ref|ZP_14726942.1| S4 domain protein [Staphylococcus epidermidis NIH08001]
gi|420224879|ref|ZP_14729717.1| S4 domain protein [Staphylococcus epidermidis NIH06004]
gi|420226982|ref|ZP_14731755.1| S4 domain protein [Staphylococcus epidermidis NIH05003]
gi|420229304|ref|ZP_14734010.1| S4 domain protein [Staphylococcus epidermidis NIH04003]
gi|291319145|gb|EFE59515.1| S4 domain-containing protein YlmH [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329734440|gb|EGG70753.1| S4 domain protein [Staphylococcus epidermidis VCU045]
gi|341652341|gb|EGS76129.1| S4 domain protein [Staphylococcus epidermidis VCU037]
gi|341654999|gb|EGS78735.1| S4 domain protein [Staphylococcus epidermidis VCU105]
gi|374820721|gb|EHR84797.1| S4 domain protein [Staphylococcus epidermidis VCU120]
gi|374827536|gb|EHR91398.1| S4 domain protein [Staphylococcus epidermidis VCU123]
gi|374834970|gb|EHR98601.1| S4 domain protein [Staphylococcus epidermidis VCU127]
gi|394235158|gb|EJD80732.1| YlmH protein [Staphylococcus epidermidis NIHLM095]
gi|394237576|gb|EJD83062.1| YlmH protein [Staphylococcus epidermidis NIHLM087]
gi|394249324|gb|EJD94537.1| YlmH protein [Staphylococcus epidermidis NIHLM049]
gi|394256045|gb|EJE00981.1| YlmH protein [Staphylococcus epidermidis NIHLM039]
gi|394265890|gb|EJE10536.1| YlmH protein [Staphylococcus epidermidis NIHLM020]
gi|394266769|gb|EJE11394.1| YlmH protein [Staphylococcus epidermidis NIHLM021]
gi|394280427|gb|EJE24708.1| YlmH protein [Staphylococcus epidermidis NIHLM001]
gi|394283693|gb|EJE27858.1| YlmH protein [Staphylococcus epidermidis NIH05005]
gi|394290048|gb|EJE33918.1| S4 domain protein [Staphylococcus epidermidis NIH08001]
gi|394292608|gb|EJE36350.1| YlmH protein [Staphylococcus epidermidis NIH05001]
gi|394294282|gb|EJE37968.1| S4 domain protein [Staphylococcus epidermidis NIH06004]
gi|394297483|gb|EJE41080.1| S4 domain protein [Staphylococcus epidermidis NIH05003]
gi|394299070|gb|EJE42621.1| S4 domain protein [Staphylococcus epidermidis NIH04003]
Length = 220
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 5/143 (3%)
Query: 128 GYPQAERCRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKI 185
G P AER R + P P+ + F H LG+++ GI R+++
Sbjct: 25 GGPHAERKRAIIA-PLYFKPQPEDFELTLFELQYPKKFVTIQHQHVLGTLMSLGIQRDQL 83
Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
GDII+ GE QF++ +L Y+I+ L ++ SV IP + K T +
Sbjct: 84 GDIIV-GE-DIQFVLTKQLESYIISELTRIKGASVKLNSIPTEDMIQSEENWKVHSTTVS 141
Query: 246 SLRVDALASAGFKLSRSKLVNLI 268
+LR+D + SR+ LI
Sbjct: 142 ALRLDVVLKEMIHKSRNIAQQLI 164
>gi|306824771|ref|ZP_07458115.1| S4 domain-containing protein YlmH [Streptococcus sp. oral taxon 071
str. 73H25AP]
gi|417793712|ref|ZP_12440983.1| S4 domain protein [Streptococcus oralis SK255]
gi|304432982|gb|EFM35954.1| S4 domain-containing protein YlmH [Streptococcus sp. oral taxon 071
str. 73H25AP]
gi|334272140|gb|EGL90510.1| S4 domain protein [Streptococcus oralis SK255]
Length = 263
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Query: 163 FQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVS 221
F+ SHG LG+I+ GI R+ GDI++ EK AQ V + + K+G + VS
Sbjct: 101 FEQLSHGKILGTIINQLGIDRKLFGDILV-DEKRAQIFVNRDFIPLFQDGIRKIGRLPVS 159
Query: 222 CTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSL 273
P + + + +S R+DAL S+ KLSR++ LI S+
Sbjct: 160 LEERPFTDRIISKIDFREREILVSSFRLDALLSSALKLSRNQTSQLIEKKSV 211
>gi|251810621|ref|ZP_04825094.1| ribosomal protein S4e [Staphylococcus epidermidis BCM-HMP0060]
gi|282876378|ref|ZP_06285245.1| S4 domain protein [Staphylococcus epidermidis SK135]
gi|417645978|ref|ZP_12295863.1| S4 domain protein [Staphylococcus epidermidis VCU144]
gi|417913413|ref|ZP_12557080.1| S4 domain protein [Staphylococcus epidermidis VCU109]
gi|418603427|ref|ZP_13166812.1| S4 domain protein [Staphylococcus epidermidis VCU041]
gi|418609817|ref|ZP_13172951.1| S4 domain protein [Staphylococcus epidermidis VCU065]
gi|420202094|ref|ZP_14707689.1| YlmH protein [Staphylococcus epidermidis NIHLM018]
gi|420206488|ref|ZP_14711998.1| YlmH protein [Staphylococcus epidermidis NIHLM008]
gi|421607307|ref|ZP_16048553.1| hypothetical protein B440_03118 [Staphylococcus epidermidis
AU12-03]
gi|251805781|gb|EES58438.1| ribosomal protein S4e [Staphylococcus epidermidis BCM-HMP0060]
gi|281295403|gb|EFA87930.1| S4 domain protein [Staphylococcus epidermidis SK135]
gi|329729990|gb|EGG66381.1| S4 domain protein [Staphylococcus epidermidis VCU144]
gi|341655695|gb|EGS79419.1| S4 domain protein [Staphylococcus epidermidis VCU109]
gi|374406153|gb|EHQ77056.1| S4 domain protein [Staphylococcus epidermidis VCU065]
gi|374407596|gb|EHQ78449.1| S4 domain protein [Staphylococcus epidermidis VCU041]
gi|394270067|gb|EJE14590.1| YlmH protein [Staphylococcus epidermidis NIHLM018]
gi|394278327|gb|EJE22644.1| YlmH protein [Staphylococcus epidermidis NIHLM008]
gi|406657099|gb|EKC83492.1| hypothetical protein B440_03118 [Staphylococcus epidermidis
AU12-03]
Length = 220
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 5/143 (3%)
Query: 128 GYPQAERCRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKI 185
G P AER R + P P+ + F H LG+++ GI R+++
Sbjct: 25 GGPHAERKRAIIA-PLYFKPQPEDFELTLFELQYPKKFVTIQHQHVLGTLMSLGIQRDQL 83
Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
GDII+ GE QF++ +L Y+I+ L ++ SV IP + K T +
Sbjct: 84 GDIIV-GE-DIQFVLTKQLESYIISELTRIKGASVKLNSIPTEDMIQSEENWKVHSTTVS 141
Query: 246 SLRVDALASAGFKLSRSKLVNLI 268
+LR+D + SR+ LI
Sbjct: 142 ALRLDVVLKEMIHKSRNIAQQLI 164
>gi|323489507|ref|ZP_08094734.1| hypothetical protein GPDM_09180 [Planococcus donghaensis MPA1U2]
gi|323396638|gb|EGA89457.1| hypothetical protein GPDM_09180 [Planococcus donghaensis MPA1U2]
Length = 261
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 12/175 (6%)
Query: 100 SDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAAL 155
+DFL P + E++M DV+ + G + AER R L + E D +I
Sbjct: 35 TDFLDPRQRFIVEAVMGS---TDVRMMTSGVFKDAERQRVLLYPSYFEPQQEDFNI-TVF 90
Query: 156 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 215
+ F H D LGSI+ G+ R K GDI + ++ Q V+ E+ YL ++
Sbjct: 91 ELKYPSKFVNLRHPDILGSIMSLGLDRSKFGDIRIDNDR-VQLAVMNEIGPYLQSNFVSA 149
Query: 216 GNVSVSCTRIPLLA--LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
V V + L +E T+ T+ +S+R+D + S+ + +SR K LI
Sbjct: 150 AKVKVQLNEVTDLTEMIETSEEWTEESYTV-SSMRLDTVMSSVYNISRQKAAALI 203
>gi|418624936|ref|ZP_13187596.1| S4 domain protein [Staphylococcus epidermidis VCU125]
gi|420172808|ref|ZP_14679306.1| YlmH protein [Staphylococcus epidermidis NIHLM067]
gi|374826201|gb|EHR90109.1| S4 domain protein [Staphylococcus epidermidis VCU125]
gi|394241485|gb|EJD86899.1| YlmH protein [Staphylococcus epidermidis NIHLM067]
Length = 220
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 5/143 (3%)
Query: 128 GYPQAERCRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKI 185
G P AER R + P P+ + F H LG+++ GI R+++
Sbjct: 25 GGPHAERKRAIIA-PLYFKPQPENFELTLFELQYPKKFVTIQHQHVLGTLMSLGIQRDQL 83
Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
GDII+ GE QF++ +L Y+I+ L ++ SV IP + K T +
Sbjct: 84 GDIIV-GE-DIQFVLTKQLESYIISELTRIKGASVKLNSIPTEDMIQSEENWKVHSTTVS 141
Query: 246 SLRVDALASAGFKLSRSKLVNLI 268
+LR+D + SR+ LI
Sbjct: 142 ALRLDVVLKEMIHKSRNIAQQLI 164
>gi|414158875|ref|ZP_11415167.1| hypothetical protein HMPREF9188_01441 [Streptococcus sp. F0441]
gi|410868858|gb|EKS16822.1| hypothetical protein HMPREF9188_01441 [Streptococcus sp. F0441]
Length = 263
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Query: 163 FQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVS 221
F+ SHG LG+I+ GI R+ GDI++ EK AQ V + + K+G + VS
Sbjct: 101 FEQLSHGKILGTIINQLGIDRKLFGDILV-DEKRAQIFVNRDFIPLFQDGIRKIGRLPVS 159
Query: 222 CTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSL 273
P + + + +S R+DAL S+ KLSR++ LI S+
Sbjct: 160 LEERPFTDRIISKIDFREREILVSSFRLDALLSSALKLSRNQTSQLIEKKSV 211
>gi|441471829|emb|CCQ21584.1| Putative RNA-binding protein ylmH [Listeria monocytogenes]
Length = 177
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 4/141 (2%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 157
+DFL P + + ++ GG AER R + +P+ T ++ D +A I
Sbjct: 35 TDFLDPRQRFITETVIGGYDEINVQFFGGVAHAERRRALI-YPDYYTPTEADFEIALFHI 93
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
F +H LG+++ G+ R+ GDI+ G + Q LV + DYL LEK+G
Sbjct: 94 RYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGTE-WQLLVESTMKDYLTLQLEKIGK 152
Query: 218 VSVSCTRIPLLALEYEPPRTK 238
V+V L Y R +
Sbjct: 153 VNVMLEETDLANAVYALGRNR 173
>gi|421487487|ref|ZP_15934890.1| S4 domain protein [Streptococcus oralis SK304]
gi|400370914|gb|EJP23894.1| S4 domain protein [Streptococcus oralis SK304]
Length = 263
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Query: 163 FQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVS 221
F+ SHG LG+I+ GI R+ GDI++ EK AQ V + + K+G + VS
Sbjct: 101 FEQLSHGKILGTIINQLGIDRKLFGDILV-DEKRAQIFVNRDFIPLFQDGIRKIGRLPVS 159
Query: 222 CTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSL 273
P + + + +S R+DAL S+ KLSR++ LI S+
Sbjct: 160 LEERPFTDRIISKIDFREREILVSSFRLDALLSSALKLSRNQTSQLIEKKSV 211
>gi|167765520|ref|ZP_02437584.1| hypothetical protein CLOSS21_00014 [Clostridium sp. SS2/1]
gi|167712705|gb|EDS23284.1| S4 domain protein [Clostridium sp. SS2/1]
gi|291558988|emb|CBL37788.1| Uncharacterized conserved protein, contains S4-like domain
[butyrate-producing bacterium SSC/2]
Length = 251
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 84/188 (44%), Gaps = 13/188 (6%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
K ++E+ +A ++ ++ FL ++LA + GG+ R + G
Sbjct: 9 KRLMELCEKAYNQNIYTYTHFLNEYEQSIYQDMKQELAYAHPILVGGHKYFTRAVVMFGS 68
Query: 142 PEALTSD---PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
E P + A +S + + SH D+LG+++ GI R IGDI++ G + A
Sbjct: 69 EELFGYQGEVPVVCARISPVFDKFAEELSHRDYLGALMNLGIERHLIGDILIDG-RYAYI 127
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPP-RTKSFKTIE---ASLRVDALAS 254
+ + + L++ V TR+ + + +E + +K E AS+R+D L S
Sbjct: 128 FCMEHIIGVIKEQLDQ-----VRYTRVFVEEVSWEETGYVQKYKKKEGFVASMRLDVLVS 182
Query: 255 AGFKLSRS 262
F LSR+
Sbjct: 183 QAFSLSRN 190
>gi|223043737|ref|ZP_03613780.1| YlmH protein [Staphylococcus capitis SK14]
gi|417907086|ref|ZP_12550862.1| S4 domain protein [Staphylococcus capitis VCU116]
gi|222442834|gb|EEE48936.1| YlmH protein [Staphylococcus capitis SK14]
gi|341596717|gb|EGS39308.1| S4 domain protein [Staphylococcus capitis VCU116]
Length = 262
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 5/143 (3%)
Query: 128 GYPQAERCRLSVG--HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
G P AER R + + EA D ++ + L I F H LG+++ GI RE++
Sbjct: 67 GGPYAERKRAIIAPSYYEAQVEDFEL-SLLRIDYPEKFVSIQHQHVLGTLMSLGIEREQL 125
Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
GDII+ + QF++ L Y++ L ++ +V IP+ + K T +
Sbjct: 126 GDIIVADD--IQFVLTERLESYIMFELNRIKGATVKLNSIPIKDMIQSKENWKIQSTTVS 183
Query: 246 SLRVDALASAGFKLSRSKLVNLI 268
++R+D + SR+ LI
Sbjct: 184 AMRLDVVLKDMIHKSRNIAKQLI 206
>gi|441474965|emb|CCQ24719.1| Putative RNA-binding protein ylmH [Listeria monocytogenes N53-1]
Length = 175
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 4/130 (3%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 157
+DFL P + + ++ GG AER R + +P+ T ++ D +A I
Sbjct: 35 TDFLDPRQRFITETVIGGYDEINVQFFGGVAHAERRRALI-YPDYYTPTEADFEIALFHI 93
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
F +H LG+++ G+ R+ GDI+ G + Q LV + DYL LEK+G
Sbjct: 94 RYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGTE-WQLLVESTMKDYLTLQLEKIGK 152
Query: 218 VSVSCTRIPL 227
V+V L
Sbjct: 153 VNVMLEETDL 162
>gi|418606280|ref|ZP_13169568.1| DivIVA protein [Staphylococcus epidermidis VCU057]
gi|374408673|gb|EHQ79485.1| DivIVA protein [Staphylococcus epidermidis VCU057]
Length = 446
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Query: 163 FQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSC 222
F H LG+++ GI R+++GDII+ GE QF++ +L Y+I+ L ++ SV
Sbjct: 61 FVTIQHQHVLGTLMSLGIQRDQLGDIIV-GE-DIQFVLTKQLESYIISELTRIKGASVKL 118
Query: 223 TRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
IP + K T ++LR+D + SR+ LI
Sbjct: 119 NSIPTEDMIQSEENWKVHSTTVSALRLDVVLKEMIHKSRNIAQQLI 164
>gi|418126312|ref|ZP_12763218.1| hypothetical protein SPAR86_1683 [Streptococcus pneumoniae GA44511]
gi|353796252|gb|EHD76597.1| hypothetical protein SPAR86_1683 [Streptococcus pneumoniae GA44511]
Length = 261
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 98/218 (44%), Gaps = 15/218 (6%)
Query: 70 KGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA---Q 126
KG+ +IE+ + L+ + E ++ FLTP + L+ LA +A
Sbjct: 3 KGIYQHFSIED-RPFLDKGMEWIKKVEDSYAPFLTPFINPHQEKLLKILAKTYGLACSSS 61
Query: 127 GGYPQAERCRLSVGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAR 182
G + +E R+ + +P+ SD +I + N F+ +H LG+++ GI R
Sbjct: 62 GEFVSSEYVRVLL-YPDYFQPEFSDFEISLQEIVYSN-KFEHLTHAKILGTVINQLGIER 119
Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 242
+ GDI++ E+ AQ ++ + L+K+G + VS P + + +
Sbjct: 120 KLFGDILVDEER-AQIMINQQFLLLFQDGLKKIGRIPVSLEECPFTEKIDKIEQCRELDL 178
Query: 243 IEASLRVDALASAGFKLSRSKLVNLIRYSSLASLVQIS 280
+S R+D L S KLSR++ LI LVQ++
Sbjct: 179 TVSSFRLDVLLSNVLKLSRNQANQLIE----KKLVQVN 212
>gi|417936982|ref|ZP_12580288.1| S4 domain protein [Streptococcus infantis X]
gi|343399424|gb|EGV11946.1| S4 domain protein [Streptococcus infantis X]
Length = 261
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 88/194 (45%), Gaps = 12/194 (6%)
Query: 93 SRREVLHSDFLTPPVLKESMMALEKLAD---VKAVAQGGYPQAERCRLSVGHPEALT-SD 148
S+ E ++ L+P + + LE L + +K + Y +E R+ + P+ T S
Sbjct: 25 SQVEEHYAPILSPFINPHQVFILETLGNNRGIKVFSSTSYISSEYARVILA-PDYFTPSL 83
Query: 149 PDI-VAALSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELAD 206
D + L I FQ +H LG++L GI R+ GDI++ EK AQ +V
Sbjct: 84 EDFEMTLLEIVYPSKFQQLTHSKILGTVLNRLGIDRKLFGDILVTEEK-AQIIVDRRFTT 142
Query: 207 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 266
++K+ + VS P + + + + +SLR+D S+ KLSRS+
Sbjct: 143 LFQDGIQKISELPVSLVERPFSDMIESKDDYQEKEVLVSSLRLDTFLSSILKLSRSQTSA 202
Query: 267 LIRYSSLASLVQIS 280
L+ LVQ++
Sbjct: 203 LVE----KKLVQVN 212
>gi|433463299|ref|ZP_20420858.1| hypothetical protein D479_16904 [Halobacillus sp. BAB-2008]
gi|432187809|gb|ELK45066.1| hypothetical protein D479_16904 [Halobacillus sp. BAB-2008]
Length = 263
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 78/169 (46%), Gaps = 10/169 (5%)
Query: 100 SDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS 156
+DFL P ++ M+ L D+ +GG ER R ++ P+ P+ +
Sbjct: 34 TDFLDP---RQQMIVKTILGNDPDLIYGMEGGGASNERKR-AILAPDYEILAPEDYQLVL 89
Query: 157 ITGNF--GFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 214
+ ++ F H D LG+ + GI REK+GD+I++ K Q + E+++Y+ +L
Sbjct: 90 LEASYPDKFVTLEHRDVLGAFMSLGIRREKLGDLIVRDGK-IQIIAASEISEYIKMNLTG 148
Query: 215 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 263
V +V P AL ++ +SLR+D L + +SR K
Sbjct: 149 VKRSNVQFEEKPFSALLESDEEWAERESTVSSLRLDVLVKEIYGMSRKK 197
>gi|333448148|ref|ZP_08483090.1| S4 domain-containing protein [Leuconostoc inhae KCTC 3774]
Length = 257
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
+A L I F H LG+ + GI RE IGD IL +K Q +V ++ Y+ +
Sbjct: 92 LAVLEIKYPVKFAELHHSMILGAFMSAGIKREVIGD-ILSNDKKWQVIVDAKMITYIQQT 150
Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
++K+G + + L + + +SLR+D S F +SRS +LI
Sbjct: 151 VQKIGRIKIELIARDLKDVIAVHDDWNEIFLLLSSLRIDTTISMAFNISRSVAKSLI 207
>gi|262282736|ref|ZP_06060504.1| S4 domain-containing protein [Streptococcus sp. 2_1_36FAA]
gi|262262027|gb|EEY80725.1| S4 domain-containing protein [Streptococcus sp. 2_1_36FAA]
Length = 264
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 82/190 (43%), Gaps = 12/190 (6%)
Query: 85 LEMARRASSRREVLHSDFLTPPVLKESMMALEKLAD---VKAVAQGGYPQAERCRLSVG- 140
LE+ +R + + F+ P K LE LA+ ++ Y +E R+ +
Sbjct: 24 LELIQRVEDTYSLEVTHFINPHQAK----ILESLANKYQLQTFVSSDYFPSEWVRVIIAP 79
Query: 141 -HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQF 198
+ + D D+ L I FQ +H G+++ G+ R GDI+++ ++ AQ
Sbjct: 80 SYYQLDKEDFDL-TLLEIVYPSKFQQLTHSQIFGTLMNRLGLDRRTFGDILVEKDR-AQV 137
Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
LV + I + K+ V + L S + + +S+R+D L ++ FK
Sbjct: 138 LVDKRFTQFFIDHISKIAKTPVKLKEVGFERLLRVQEAQVSKEILASSMRLDKLIASSFK 197
Query: 259 LSRSKLVNLI 268
LSRS LI
Sbjct: 198 LSRSDASQLI 207
>gi|242373477|ref|ZP_04819051.1| ribosomal protein S4e [Staphylococcus epidermidis M23864:W1]
gi|242348840|gb|EES40442.1| ribosomal protein S4e [Staphylococcus epidermidis M23864:W1]
Length = 259
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 6/151 (3%)
Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
D+ GG P AER R ++ + E D +I + L I F H LG+++
Sbjct: 57 DLNVTYNGG-PHAERKRAIIAPSYYEPQEEDYEI-SLLQIDYPEKFVNIQHQHVLGTLMS 114
Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
GI R+++GDI++ E QF++ L Y++ L ++ +V IP+ +
Sbjct: 115 LGIERDQLGDIMIGDE--IQFILTKRLESYIMFELTRIKGATVKLNSIPIKDMIQSEENW 172
Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
K ++LR+D + + SR+ LI
Sbjct: 173 KIQSATVSALRLDVVLKDMIRKSRNIAKQLI 203
>gi|409386151|ref|ZP_11238616.1| hypothetical protein, contains S4-like RNA binding domain
[Lactococcus raffinolactis 4877]
gi|399206561|emb|CCK19531.1| hypothetical protein, contains S4-like RNA binding domain
[Lactococcus raffinolactis 4877]
Length = 265
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 77/174 (44%), Gaps = 5/174 (2%)
Query: 100 SDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALS 156
+DFL P + +++ + +D++ + E ++ + + D +A L
Sbjct: 36 TDFLNPRQVFILTTLVQGQHASDIQMFTSSAIAETEYVKVILAPTYYQLENADFELACLQ 95
Query: 157 ITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 215
I F H LG++LG TG+ R KIGDI++ + AQ V +LA + S+ K+
Sbjct: 96 IDFASKFVTLKHSQILGTLLGETGLERSKIGDIVVH-DTFAQVFVDAKLATLIADSIHKI 154
Query: 216 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIR 269
V I + + + +SLR+D + F +SR+ NLI+
Sbjct: 155 ARSGVRIREIDVTKFVSTTEQAVTKTVTLSSLRLDKAIATVFNMSRNLAQNLIQ 208
>gi|315658522|ref|ZP_07911394.1| S4 domain-containing protein YlmH [Staphylococcus lugdunensis
M23590]
gi|385784647|ref|YP_005760820.1| hypothetical protein SLUG_17090 [Staphylococcus lugdunensis
N920143]
gi|418414322|ref|ZP_12987537.1| hypothetical protein HMPREF9308_00702 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
gi|418637505|ref|ZP_13199824.1| S4 domain protein [Staphylococcus lugdunensis VCU139]
gi|315496851|gb|EFU85174.1| S4 domain-containing protein YlmH [Staphylococcus lugdunensis
M23590]
gi|339894903|emb|CCB54204.1| conserved hypothetical protein [Staphylococcus lugdunensis N920143]
gi|374838751|gb|EHS02286.1| S4 domain protein [Staphylococcus lugdunensis VCU139]
gi|410876929|gb|EKS24826.1| hypothetical protein HMPREF9308_00702 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
Length = 264
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 4/150 (2%)
Query: 120 DVKAVAQGG-YPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT 178
D++ GG Y + +R ++ + E D ++ L I F H LG+++
Sbjct: 62 DIQVAFNGGLYAERQRAIIAPSYYEPRVEDFEL-CCLEIDYPEKFVTLQHQHVLGTLMSL 120
Query: 179 GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK 238
GI RE++GDI + QF++ +L Y++ L ++ +V IPL + K
Sbjct: 121 GIEREQVGDI--HVAQRIQFVLTRQLESYIMMELTRIKGATVKLNSIPLQDMIQSEENWK 178
Query: 239 SFKTIEASLRVDALASAGFKLSRSKLVNLI 268
T +++R+D + SRS LI
Sbjct: 179 IQHTTVSAMRLDVVLKDMIHKSRSIAKQLI 208
>gi|300173567|ref|YP_003772733.1| S4 domain-containing protein [Leuconostoc gasicomitatum LMG 18811]
gi|299887946|emb|CBL91914.1| S4 domain protein [Leuconostoc gasicomitatum LMG 18811]
Length = 263
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
+A L I F H LG+ + GI RE IGD IL +K Q +V ++ Y+ +
Sbjct: 92 LAVLEIKYPVKFAELHHSMILGAFMSAGIKREVIGD-ILSNDKKWQVIVDAKMITYIQQT 150
Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
++K+G + + L + + +SLR+D S F +SRS +LI
Sbjct: 151 VQKIGRIKIELIARDLKDVIAVHDDWNEIFLLLSSLRIDTTISMAFNISRSVAKSLI 207
>gi|306829909|ref|ZP_07463096.1| S4 domain-containing protein YlmH [Streptococcus mitis ATCC 6249]
gi|304427920|gb|EFM31013.1| S4 domain-containing protein YlmH [Streptococcus mitis ATCC 6249]
Length = 263
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Query: 163 FQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVS 221
F+ SHG LG+I+ GI R+ GDI++ EK AQ V + + K+G + VS
Sbjct: 101 FEQLSHGKILGTIINQLGIDRKLFGDILV-DEKRAQIFVNRDFIPLFQDGIIKIGRLPVS 159
Query: 222 CTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSL 273
P + + + +S R+DAL S+ KLSR++ LI S+
Sbjct: 160 LEERPFTDRIKSKIDYREREILVSSFRLDALLSSALKLSRNQTSQLIEKKSV 211
>gi|401684481|ref|ZP_10816360.1| S4 domain protein [Streptococcus sp. BS35b]
gi|418974565|ref|ZP_13522475.1| S4 domain protein [Streptococcus oralis SK1074]
gi|383348992|gb|EID26944.1| S4 domain protein [Streptococcus oralis SK1074]
gi|400185725|gb|EJO19951.1| S4 domain protein [Streptococcus sp. BS35b]
Length = 263
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Query: 163 FQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVS 221
F+ SHG LG+I+ GI R+ GDI++ EK AQ V + + ++G + VS
Sbjct: 101 FEQLSHGKILGTIINQLGIDRKLFGDILV-DEKRAQIFVNRDFIPLFQDGIRRIGRLPVS 159
Query: 222 CTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSL 273
P + + + +S R+DAL S+ KLSR++ LI S+
Sbjct: 160 LEERPFTDRIISKIDFREREILVSSFRLDALLSSALKLSRNQTSQLIEKKSV 211
>gi|418411611|ref|ZP_12984878.1| hypothetical protein HMPREF9281_00482 [Staphylococcus epidermidis
BVS058A4]
gi|410892337|gb|EKS40131.1| hypothetical protein HMPREF9281_00482 [Staphylococcus epidermidis
BVS058A4]
Length = 220
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 5/143 (3%)
Query: 128 GYPQAERCRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKI 185
G P AER R + P P+ + F H LG+++ GI R+++
Sbjct: 25 GGPYAERKRAIIA-PLYFKPQPEDFELTLFELQYPKKFVTIQHQHVLGTLMSLGIQRDQL 83
Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
GDII+ GE QF++ +L Y+I+ L ++ SV IP + K T +
Sbjct: 84 GDIIV-GE-DIQFVLTKQLESYIISELTRIKGASVKLNSIPTEDMIQSEENWKVHSTTVS 141
Query: 246 SLRVDALASAGFKLSRSKLVNLI 268
+LR+D + SR+ LI
Sbjct: 142 ALRLDVVLKEMIHKSRNIAQQLI 164
>gi|420198977|ref|ZP_14704661.1| YlmH protein [Staphylococcus epidermidis NIHLM031]
gi|394272663|gb|EJE17113.1| YlmH protein [Staphylococcus epidermidis NIHLM031]
Length = 220
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 5/143 (3%)
Query: 128 GYPQAERCRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKI 185
G P AER R + P P+ + F H LG+++ GI R+++
Sbjct: 25 GGPHAERKRAIIA-PLYFKPQPEDFELTLFELQYPKKFVTIQHQHVLGTLMSLGIQRDQL 83
Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
GDII+ GE QF++ +L Y+I+ L ++ +V IP + K T +
Sbjct: 84 GDIIV-GE-DIQFVLTKQLESYIISELTRIKGATVKLNSIPTEDMIQSEENWKVHSTTVS 141
Query: 246 SLRVDALASAGFKLSRSKLVNLI 268
+LR+D + SR+ LI
Sbjct: 142 ALRLDVVLKEMIHKSRNIAQQLI 164
>gi|419429862|ref|ZP_13970026.1| hypothetical protein SPAR25_1554 [Streptococcus pneumoniae GA11856]
gi|419527998|ref|ZP_14067541.1| S4 domain protein [Streptococcus pneumoniae GA17719]
gi|379550040|gb|EHZ15142.1| hypothetical protein SPAR25_1554 [Streptococcus pneumoniae GA11856]
gi|379566151|gb|EHZ31142.1| S4 domain protein [Streptococcus pneumoniae GA17719]
Length = 252
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 98/218 (44%), Gaps = 15/218 (6%)
Query: 70 KGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA---Q 126
KG+ +IE+ + L+ + E ++ FLTP + L+ LA +A
Sbjct: 3 KGIYQHFSIED-RPFLDKGMEWIKKVEDSYAPFLTPFINPHQEKLLKILAKTYGIACSSS 61
Query: 127 GGYPQAERCRLSVGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAR 182
G + +E R+ + +P+ SD +I + N F+ +H LG+++ GI R
Sbjct: 62 GEFVSSEYVRVLL-YPDYFQPEFSDFEISLQEIVYSN-KFEHLTHAKILGTVINQLGIER 119
Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 242
+ GDI++ E+ AQ ++ + L+K+G + VS P + + +
Sbjct: 120 KLFGDILVDEER-AQIMINQQFLLLFQDGLKKIGRIPVSLEERPFTEKIDKLEQYRELNL 178
Query: 243 IEASLRVDALASAGFKLSRSKLVNLIRYSSLASLVQIS 280
+S R+D L S KLSR++ LI LVQ++
Sbjct: 179 SVSSFRLDVLLSNVLKLSRNQANQLIE----KKLVQVN 212
>gi|225861490|ref|YP_002742999.1| YlmH protein [Streptococcus pneumoniae Taiwan19F-14]
gi|387788710|ref|YP_006253778.1| YlmH protein [Streptococcus pneumoniae ST556]
gi|417313140|ref|ZP_12099852.1| hypothetical protein SPAR5_1539 [Streptococcus pneumoniae GA04375]
gi|418085654|ref|ZP_12722833.1| hypothetical protein SPAR90_1559 [Streptococcus pneumoniae GA47281]
gi|418094453|ref|ZP_12731580.1| hypothetical protein SPAR110_1581 [Streptococcus pneumoniae
GA49138]
gi|418119110|ref|ZP_12756067.1| hypothetical protein SPAR54_1151 [Streptococcus pneumoniae GA18523]
gi|418142176|ref|ZP_12778989.1| hypothetical protein SPAR30_1563 [Streptococcus pneumoniae GA13455]
gi|418151167|ref|ZP_12787913.1| hypothetical protein SPAR37_1580 [Streptococcus pneumoniae GA14798]
gi|418164957|ref|ZP_12801625.1| hypothetical protein SPAR45_1593 [Streptococcus pneumoniae GA17371]
gi|418171799|ref|ZP_12808423.1| hypothetical protein SPAR58_1584 [Streptococcus pneumoniae GA19451]
gi|418228169|ref|ZP_12854786.1| hypothetical protein SPAR135_1553 [Streptococcus pneumoniae
3063-00]
gi|419438700|ref|ZP_13978768.1| hypothetical protein SPAR6_1636 [Streptococcus pneumoniae GA13499]
gi|419449449|ref|ZP_13989445.1| hypothetical protein SPAR132_1529 [Streptococcus pneumoniae
4075-00]
gi|419502314|ref|ZP_14041998.1| hypothetical protein SPAR102_1560 [Streptococcus pneumoniae
GA47628]
gi|419519373|ref|ZP_14058979.1| hypothetical protein SPAR156_1525 [Streptococcus pneumoniae
GA08825]
gi|225726507|gb|ACO22358.1| YlmH protein [Streptococcus pneumoniae Taiwan19F-14]
gi|327389848|gb|EGE88193.1| hypothetical protein SPAR5_1539 [Streptococcus pneumoniae GA04375]
gi|353756363|gb|EHD36964.1| hypothetical protein SPAR90_1559 [Streptococcus pneumoniae GA47281]
gi|353764949|gb|EHD45497.1| hypothetical protein SPAR110_1581 [Streptococcus pneumoniae
GA49138]
gi|353791062|gb|EHD71443.1| hypothetical protein SPAR54_1151 [Streptococcus pneumoniae GA18523]
gi|353806427|gb|EHD86701.1| hypothetical protein SPAR30_1563 [Streptococcus pneumoniae GA13455]
gi|353814377|gb|EHD94603.1| hypothetical protein SPAR37_1580 [Streptococcus pneumoniae GA14798]
gi|353828789|gb|EHE08925.1| hypothetical protein SPAR45_1593 [Streptococcus pneumoniae GA17371]
gi|353835536|gb|EHE15630.1| hypothetical protein SPAR58_1584 [Streptococcus pneumoniae GA19451]
gi|353880564|gb|EHE60379.1| hypothetical protein SPAR135_1553 [Streptococcus pneumoniae
3063-00]
gi|379138452|gb|AFC95243.1| YlmH protein [Streptococcus pneumoniae ST556]
gi|379537107|gb|EHZ02292.1| hypothetical protein SPAR6_1636 [Streptococcus pneumoniae GA13499]
gi|379600527|gb|EHZ65308.1| hypothetical protein SPAR102_1560 [Streptococcus pneumoniae
GA47628]
gi|379622067|gb|EHZ86703.1| hypothetical protein SPAR132_1529 [Streptococcus pneumoniae
4075-00]
gi|379641210|gb|EIA05748.1| hypothetical protein SPAR156_1525 [Streptococcus pneumoniae
GA08825]
Length = 261
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 98/218 (44%), Gaps = 15/218 (6%)
Query: 70 KGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA---Q 126
KG+ +IE+ + L+ + E ++ FLTP + L+ LA +A
Sbjct: 3 KGIYQHFSIED-RPFLDKGMEWIKKVEDSYAPFLTPFINPHQEKLLKILAKTYGIACSSS 61
Query: 127 GGYPQAERCRLSVGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAR 182
G + +E R+ + +P+ SD +I + N F+ +H LG+++ GI R
Sbjct: 62 GEFVSSEYVRVLL-YPDYFQPEFSDFEISLQEIVYSN-KFEHLTHAKILGTVINQLGIER 119
Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 242
+ GDI++ E+ AQ ++ + L+K+G + VS P + + +
Sbjct: 120 KLFGDILVDEER-AQIMINQQFLLLFQDGLKKIGRIPVSLEERPFTEKIDKLEQYRELNL 178
Query: 243 IEASLRVDALASAGFKLSRSKLVNLIRYSSLASLVQIS 280
+S R+D L S KLSR++ LI LVQ++
Sbjct: 179 SVSSFRLDVLLSNVLKLSRNQANQLIE----KKLVQVN 212
>gi|15903549|ref|NP_359099.1| hypothetical protein spr1506 [Streptococcus pneumoniae R6]
gi|15459167|gb|AAL00310.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
Length = 283
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 100/222 (45%), Gaps = 15/222 (6%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
D + KG+ +IE+ + L+ + E ++ FLTP + L+ LA +A
Sbjct: 21 DRMNKGIYQHFSIED-RPFLDKGMEWIKKVEDSYAPFLTPFINPHQEKLLKILAKTYGLA 79
Query: 126 ---QGGYPQAERCRLSVGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGT- 178
G + +E R+ + +P+ SD +I + N F+ +H LG+++
Sbjct: 80 CSSSGEFVSSEYVRVLL-YPDYFQPEFSDFEISLQEIVYSN-KFEYLTHAKILGTVINQL 137
Query: 179 GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK 238
GI R+ GDI++ E+ AQ ++ + L+K+G + VS P + + +
Sbjct: 138 GIERKLFGDILVDEER-AQIMINQQFLLLFQDGLKKIGRIPVSLEERPFTEKIDKLEQYR 196
Query: 239 SFKTIEASLRVDALASAGFKLSRSKLVNLIRYSSLASLVQIS 280
+S R+D L S KLSR++ LI LVQ++
Sbjct: 197 ELDLSVSSFRLDVLLSNVLKLSRNQANQLIE----KKLVQVN 234
>gi|257066413|ref|YP_003152669.1| RNA-binding S4 domain-containing protein [Anaerococcus prevotii DSM
20548]
gi|256798293|gb|ACV28948.1| RNA-binding S4 domain protein [Anaerococcus prevotii DSM 20548]
Length = 255
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 94/212 (44%), Gaps = 29/212 (13%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
+ +K K+ I++ ILE R +++EV S F P ++ + + ++ ++ V
Sbjct: 8 NFVKDKAKKSNIKKAISILE--RGFYTKQEV--SSFFLDPFERKVIKDIARINNIDIVFV 63
Query: 127 GGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 186
G + ER + + + + LS F H D LG+++ GI R IG
Sbjct: 64 GANDKCERKIFVANYYYLPIEESNYIKVLS----FDSSDIKHPDVLGALIHMGIDRNSIG 119
Query: 187 DIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYE-PPRTKSFKTIE- 244
DI + E +F+V+ E AD++ +L +RI ++ E K K IE
Sbjct: 120 DISIL-EDSVEFVVLEEEADFIKYNL----------SRIKREGIDIEIKEECKLNKAIED 168
Query: 245 --------ASLRVDALASAGFKLSRSKLVNLI 268
+SLR+D + S+ SRSK +LI
Sbjct: 169 YILSTSFISSLRLDNIVSSLVNTSRSKAKDLI 200
>gi|291546180|emb|CBL19288.1| hypothetical protein CK1_11040 [Ruminococcus sp. SR1/5]
Length = 142
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 65/136 (47%), Gaps = 15/136 (11%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKE----SMMALEKLADVKAVAQGGYPQAERCR 136
VK I E+A A R +DFL L E + KL V A GGY AER +
Sbjct: 8 VKRIRELANLAYQRDITTFTDFLN---LNERNILNSQNFHKLG-VTAEGFGGYENAER-Q 62
Query: 137 LSVGHPEAL--TSDP--DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQG 192
+ HP+AL T D D + F + +H D+LG+IL G+ R +GDI+++
Sbjct: 63 MVAFHPDALAFTWDYPIDCIRLEPKAVKFS-EDLTHRDYLGAILNLGVDRSVVGDILIE- 120
Query: 193 EKGAQFLVVPELADYL 208
+ A F + ++ D+
Sbjct: 121 DHTASFFCLRQMTDFF 136
>gi|118443110|ref|YP_878020.1| YlmH protein [Clostridium novyi NT]
gi|118133566|gb|ABK60610.1| YlmH protein, putative [Clostridium novyi NT]
Length = 261
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 77/153 (50%), Gaps = 15/153 (9%)
Query: 125 AQGGYPQAERCRLSV---GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIA 181
A G + +++R +S+ E + + P + + I F+ H DFLG+++ G+
Sbjct: 62 AFGIFKESDRRVISILGAYDHEEIYNYP--IELIRIDNKSTFKKLKHSDFLGALMAQGLK 119
Query: 182 REKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFK 241
REK GD+I++G+ + +++ ++I ++ K+G S I Y+ +F+
Sbjct: 120 REKFGDLIVKGD-SCYVPICSDISQFIIDNVTKIGKNPCSIKIIN----HYDGNEVPTFQ 174
Query: 242 TIE-----ASLRVDALASAGFKLSRSKLVNLIR 269
E +S+R+D++ +A LSR +LI+
Sbjct: 175 FQEKSVVISSMRLDSIVAALSGLSRGNSEDLIK 207
>gi|149001946|ref|ZP_01826900.1| YlmH protein [Streptococcus pneumoniae SP14-BS69]
gi|419458251|ref|ZP_13998193.1| hypothetical protein SPAR1_1705 [Streptococcus pneumoniae GA02254]
gi|147759755|gb|EDK66745.1| YlmH protein [Streptococcus pneumoniae SP14-BS69]
gi|379529915|gb|EHY95156.1| hypothetical protein SPAR1_1705 [Streptococcus pneumoniae GA02254]
Length = 261
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 100/218 (45%), Gaps = 15/218 (6%)
Query: 70 KGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQ 126
KG+ +IE+ + L+ + E ++ FLTP P ++ + L K + ++
Sbjct: 3 KGIYQHFSIED-RPFLDKRMEWIKKVEDSYAPFLTPFINPHQEKLLKILAKTYGLACISS 61
Query: 127 GGYPQAERCRLSVGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAR 182
G + +E R+ + +P+ SD +I + N F+ +H LG+++ GI R
Sbjct: 62 GEFVSSEYVRVLL-YPDYFQPEFSDFEISLQEIVYSN-KFEYLTHAKILGTVINQLGIER 119
Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 242
+ GDI++ E+ AQ ++ + L+K+G + VS P + + +
Sbjct: 120 KLFGDILVDEER-AQIMINQQFLLLFQDGLKKIGRIPVSLEERPFTEKIDKLEQYRELDL 178
Query: 243 IEASLRVDALASAGFKLSRSKLVNLIRYSSLASLVQIS 280
+S R+D L S KLSR++ LI LVQ++
Sbjct: 179 SVSSFRLDVLLSNVLKLSRNQANQLIE----KKLVQVN 212
>gi|312867091|ref|ZP_07727301.1| S4 domain protein [Streptococcus parasanguinis F0405]
gi|311097220|gb|EFQ55454.1| S4 domain protein [Streptococcus parasanguinis F0405]
Length = 263
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 82/196 (41%), Gaps = 12/196 (6%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERC 135
E + +E++ R R V + FL P + L +A ++ A + E
Sbjct: 16 EFIDRCIELSERVVERYSVEVTGFLNP----HQVTILRNVAASYQLQVFASSDEQKMEYA 71
Query: 136 RLSVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQG 192
++ V P+ DP +A L + F +H LG+I+ G+ R+ GDI L
Sbjct: 72 KVIVA-PDYYQLDPSDFDLALLEMVYASKFHHLTHSQVLGTIVHQLGVERKSFGDI-LTS 129
Query: 193 EKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDAL 252
+ Q V Y + ++K+ V V +PL ++ + +S R+D +
Sbjct: 130 DGKIQVFVEQRFVPYFMDHIQKISRVPVKLREVPLSEQMIVEEESQQRDILVSSYRLDKV 189
Query: 253 ASAGFKLSRSKLVNLI 268
+ FKLSRS+ LI
Sbjct: 190 IAGTFKLSRSQASQLI 205
>gi|296110598|ref|YP_003620979.1| cell division protein () [Leuconostoc kimchii IMSNU 11154]
gi|339490310|ref|YP_004704815.1| cell division protein [Leuconostoc sp. C2]
gi|295832129|gb|ADG40010.1| cell division protein (putative) [Leuconostoc kimchii IMSNU 11154]
gi|338851982|gb|AEJ30192.1| cell division protein (putative) [Leuconostoc sp. C2]
Length = 264
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 73/168 (43%), Gaps = 15/168 (8%)
Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAE--RCRLSVGHPEALTSDPDIVAALSITG 159
FL P + + D+ G P AE R ++ E SD ++ A L I
Sbjct: 41 FLNPREQYILQTCVNRAKDLVVQFNGVVPHAESQRAFIAPSFYEIELSDFEL-ALLEIKY 99
Query: 160 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 219
F H LGS + GI R IGD IL + Q +V ++ Y+ ++EK+G V
Sbjct: 100 PVKFTELHHATILGSFMSAGIERAVIGD-ILSHQDQWQIVVDAKMVTYIQQTVEKIGRV- 157
Query: 220 VSCTRIPLLA--LEYEPPRTKS----FKTIEASLRVDALASAGFKLSR 261
RI L+ L++ P + + +SLR+D SA F +SR
Sbjct: 158 ----RITLMEQNLDHIPVTDRDDWDEVFLLLSSLRIDTAVSAAFDISR 201
>gi|331265956|ref|YP_004325586.1| hypothetical protein SOR_0583 [Streptococcus oralis Uo5]
gi|326682628|emb|CBZ00245.1| conserved hypothetical protein [Streptococcus oralis Uo5]
Length = 263
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 58/123 (47%), Gaps = 2/123 (1%)
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLIT 210
+A L I F+ SHG LG+I+ GI R+ GDI++ EK AQ V
Sbjct: 90 MALLEICYPSKFEQLSHGKILGTIINQLGIDRKLFGDILV-DEKRAQIFVNRAFIPLFQD 148
Query: 211 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIRY 270
+ K+G + VS P + + + +S R+DAL S+ KLSR++ LI
Sbjct: 149 GIRKIGRLPVSLEERPFTDRILSKIDYREREILVSSFRLDALLSSVLKLSRNQTSQLIEK 208
Query: 271 SSL 273
S+
Sbjct: 209 KSV 211
>gi|419768698|ref|ZP_14294814.1| YlmH family protein [Staphylococcus aureus subsp. aureus IS-250]
gi|383359524|gb|EID36947.1| YlmH family protein [Staphylococcus aureus subsp. aureus IS-250]
Length = 174
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 62/143 (43%), Gaps = 5/143 (3%)
Query: 128 GYPQAERCRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKI 185
G P AER R + P P+ + F H LG+++ GI R+++
Sbjct: 25 GGPHAERKRAIIA-PLYFKPQPEDFELTLFELQYPKKFVTIQHQHVLGTLMSLGIQRDQL 83
Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
GDII+ GE QF++ +L Y+I L ++ SV IP + K T +
Sbjct: 84 GDIIV-GE-DIQFVLTKQLESYIIFELTRIKGASVKLNSIPTEDMIQSEENWKVHSTTVS 141
Query: 246 SLRVDALASAGFKLSRSKLVNLI 268
+LR+D + SR+ LI
Sbjct: 142 ALRLDVVLKEMIHKSRNIAQQLI 164
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.135 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,268,931,306
Number of Sequences: 23463169
Number of extensions: 173046879
Number of successful extensions: 449064
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 595
Number of HSP's that attempted gapping in prelim test: 447321
Number of HSP's gapped (non-prelim): 1170
length of query: 289
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 148
effective length of database: 9,050,888,538
effective search space: 1339531503624
effective search space used: 1339531503624
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 76 (33.9 bits)