BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022999
         (289 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P71020|YLMH_BACSU Putative RNA-binding protein YlmH OS=Bacillus subtilis (strain 168)
           GN=ylmH PE=4 SV=1
          Length = 257

 Score = 72.8 bits (177), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 95/194 (48%), Gaps = 11/194 (5%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLS 138
           +   LE  R    +  +  +DFL P   +E ++  A+   ADV     GGY +AER R +
Sbjct: 16  IDQALEWKRIVQEQYRMKLTDFLDP---REQVILSAVTGQADVGLAFSGGYDRAERKR-A 71

Query: 139 VGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
           +  PE +T   SD ++  A ++     F    H   LG+++G G+ R+K GDI+   E  
Sbjct: 72  ILFPEYITPEESDFEL-QAFNVRYADKFVSVDHRSLLGALMGIGLKRQKFGDIVF-SETA 129

Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASA 255
            Q +V  + AD++   L + G  +VS  +I L  L       +      +SLR+DA+ ++
Sbjct: 130 VQLIVSADTADFVAAQLTQAGKAAVSLEKIDLSDLNIPAVDVEIRDDTVSSLRLDAVCAS 189

Query: 256 GFKLSRSKLVNLIR 269
             + SR K   L++
Sbjct: 190 MSRQSRQKSQTLVK 203


>sp|Q9GZM7|TINAL_HUMAN Tubulointerstitial nephritis antigen-like OS=Homo sapiens
           GN=TINAGL1 PE=1 SV=1
          Length = 467

 Score = 34.3 bits (77), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 143 EALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDI 188
           E    DPD++ A++  GN+G+Q  +H  F G  L  GI R ++G I
Sbjct: 138 EPCLVDPDMIKAIN-QGNYGWQAGNHSAFWGMTLDEGI-RYRLGTI 181


>sp|Q99JR5|TINAL_MOUSE Tubulointerstitial nephritis antigen-like OS=Mus musculus
           GN=Tinagl1 PE=1 SV=1
          Length = 466

 Score = 33.9 bits (76), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 143 EALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDI 188
           E    DPD++ A++  GN+G+Q  +H  F G  L  GI R ++G I
Sbjct: 137 EPCLVDPDMIKAIN-RGNYGWQAGNHSAFWGMTLDEGI-RYRLGTI 180


>sp|P79202|CP11A_SHEEP Cholesterol side-chain cleavage enzyme, mitochondrial OS=Ovis aries
           GN=CYP11A1 PE=1 SV=1
          Length = 520

 Score = 32.0 bits (71), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 42  TFPTSLRHTASGIRHLIQAVKGNFDDLLKGVGDKNAIEEVKHILEMARRASS----RREV 97
            +P  L H     + L++ VK N  ++L G  D  ++    H+ EMAR  +     R+EV
Sbjct: 296 NYPGILYHLLKSEKMLLEDVKANITEMLAGGVDTTSMTLQWHLYEMARSLNVQEMLRKEV 355

Query: 98  LHS 100
           L++
Sbjct: 356 LNA 358


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.135    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,087,660
Number of Sequences: 539616
Number of extensions: 4217754
Number of successful extensions: 10702
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 10697
Number of HSP's gapped (non-prelim): 14
length of query: 289
length of database: 191,569,459
effective HSP length: 116
effective length of query: 173
effective length of database: 128,974,003
effective search space: 22312502519
effective search space used: 22312502519
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)