BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023000
(289 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WYS|A Chain A, Solution Structure Of The First Zf-An1 Domain Of Mouse
Riken Cdna 2310008m20 Protein
Length = 75
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 30/43 (69%)
Query: 8 DLGKHCSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKA 50
D+G+HC + C+Q DFLPF CD C +FCL+HRS + H C +
Sbjct: 12 DIGQHCQVQHCRQRDFLPFVCDGCSGIFCLEHRSKDSHGCSEV 54
>pdb|1WFE|A Chain A, Solution Structure Of The 2nd Zf-An1 Domain Of Mouse
Riken Cdna 2310008m20 Protein
Length = 86
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 13 CSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQCPKAE 51
CS C ++ + C C K FCL HR + H C K E
Sbjct: 28 CSFKGCTDVELVAVICPYCEKNFCLRHRHQSDHDCEKLE 66
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 97 KKRKCPVRGCKEILVFSNTIKCRDCTVDHCLKHRFAPDHSCPGPKKLDTGFAFMSLLNRS 156
K C +GC ++ + + + C C + CL+HR DH C + A L RS
Sbjct: 24 KSYSCSFKGCTDVELVA--VICPYCEKNFCLRHRHQSDHDCEKLEVAKPRMAATQKLVRS 81
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 33.9 bits (76), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 225 CPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHG 284
CP CG RF + HV + HD G+ +P + C C +GF P L H+++ H
Sbjct: 38 CPVCGLRFKRKDRMSYHV-RSHD--GSVGKPYI----CQSCGKGFSRPDHLNGHIKQVHS 90
Query: 285 GTSRA 289
G S
Sbjct: 91 GPSSG 95
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 225 CPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHG 284
CP+CG FS L E H R+ +P CP+C + F D L H +R H
Sbjct: 24 CPECGKSFSRSDHLAE-----HQRTHTGEKPY----KCPECGKSFSDKKDLTRH-QRTHT 73
Query: 285 G 285
G
Sbjct: 74 G 74
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
Query: 225 CPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHG 284
CP+CG FS L + H R+ +P CP+C + F L H +R H
Sbjct: 80 CPECGKSFSQRANL-----RAHQRTHTGEKPY----ACPECGKSFSQLAHLRAH-QRTHT 129
Query: 285 G 285
G
Sbjct: 130 G 130
>pdb|1X4V|A Chain A, Solution Structure Of The Zf-An1 Domain From Human
Hypothetical Protein Loc130617
Length = 63
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 13 CSLPDCKQIDFLPFTCDCCHKVFCLDHRSYNQHQC 47
C C+Q + + TC+ C + FC+ HR H C
Sbjct: 15 CERAGCRQREMMKLTCERCSRNFCIKHRHPLDHDC 49
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 100 KCPVRGCKEILVFSNTIKCRDCTVDHCLKHRFAPDHSCPG 139
KC GC++ + + C C+ + C+KHR DH C G
Sbjct: 14 KCERAGCRQREMM--KLTCERCSRNFCIKHRHPLDHDCSG 51
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 10/61 (16%)
Query: 225 CPQCGARFSSVTTLIEHVEKIHDRSGNQARPKVTVDVCPKCSQGFCDPVALVEHVERDHG 284
CP+CG FS + L + H R+ +P CP+C + F L +H +R H
Sbjct: 7 CPECGKSFSQSSNL-----QKHQRTHTGEKP----YKCPECGKSFSQSSDLQKH-QRTHT 56
Query: 285 G 285
G
Sbjct: 57 G 57
>pdb|1DZJ|A Chain A, Porcine Odorant Binding Protein Complexed With
2-Amino-4-Butyl-5-Propylselenazole
pdb|1DZJ|B Chain B, Porcine Odorant Binding Protein Complexed With
2-Amino-4-Butyl-5-Propylselenazole
pdb|1DZK|A Chain A, Porcine Odorant Binding Protein Complexed With Pyrazine
(2-Isobutyl-3-Metoxypyrazine)
pdb|1DZK|B Chain B, Porcine Odorant Binding Protein Complexed With Pyrazine
(2-Isobutyl-3-Metoxypyrazine)
pdb|1DZM|A Chain A, Porcine Odorant Binding Protein Complexed With Benzoic
Acid Phenylmethylester
pdb|1DZM|B Chain B, Porcine Odorant Binding Protein Complexed With Benzoic
Acid Phenylmethylester
pdb|1DZP|A Chain A, Porcine Odorant Binding Protein Complexed With
Diphenylmethanone
pdb|1DZP|B Chain B, Porcine Odorant Binding Protein Complexed With
Diphenylmethanone
pdb|1E00|A Chain A, Porcine Odorant Binding Protein Complexed With
2,6-Dimethyl- 7-Octen-2-Ol
pdb|1E00|B Chain B, Porcine Odorant Binding Protein Complexed With
2,6-Dimethyl- 7-Octen-2-Ol
pdb|1E02|A Chain A, Porcine Odorant Binding Protein Complexed With Undecanal
pdb|1E02|B Chain B, Porcine Odorant Binding Protein Complexed With Undecanal
pdb|1E06|A Chain A, Porcine Odorant Binding Protein Complexed With 5-Methyl-2-
(1-Methylethyl)phenol
pdb|1E06|B Chain B, Porcine Odorant Binding Protein Complexed With 5-Methyl-2-
(1-Methylethyl)phenol
pdb|1HQP|A Chain A, Crystal Structure Of A Truncated Form Of Porcine Odorant-
Binding Protein
Length = 157
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 159 EEPKPKQSPATSSTKWTSSFLNAA 182
+EP+P+Q P S KW +S++ ++
Sbjct: 1 QEPQPEQDPFELSGKWITSYIGSS 24
>pdb|3K1Q|C Chain C, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
Length = 1196
Score = 27.3 bits (59), Expect = 9.6, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 224 LCPQCGARFSSVTTLIEHVEKIH--DRSGNQARPKV 257
+C C ARFS+++ L EH+ H D S A P +
Sbjct: 100 VCNVCNARFSTMSALSEHLRSDHRDDASTLLATPMI 135
>pdb|3IYL|X Chain X, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|Y Chain Y, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 1214
Score = 27.3 bits (59), Expect = 10.0, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 224 LCPQCGARFSSVTTLIEHVEKIH--DRSGNQARPKV 257
+C C ARFS+++ L EH+ H D S A P +
Sbjct: 118 VCNVCNARFSTMSALSEHLRSDHRDDASTLLATPMI 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,639,436
Number of Sequences: 62578
Number of extensions: 322422
Number of successful extensions: 675
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 642
Number of HSP's gapped (non-prelim): 43
length of query: 289
length of database: 14,973,337
effective HSP length: 98
effective length of query: 191
effective length of database: 8,840,693
effective search space: 1688572363
effective search space used: 1688572363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)