BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023002
(289 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FNG6|C3H51_ARATH Zinc finger CCCH domain-containing protein 51 OS=Arabidopsis
thaliana GN=At5g06420 PE=2 SV=1
Length = 378
Score = 419 bits (1077), Expect = e-116, Method: Compositional matrix adjust.
Identities = 212/294 (72%), Positives = 249/294 (84%), Gaps = 12/294 (4%)
Query: 1 MAESGSGEA--QQAEQVCNFFRKPTKNKNIRKRTIREDE-DEDS-IESSVLQNLKKPTKP 56
MAE G+ + Q+++QVC FF+KPTK+KNIRKRTI DE D DS ESS+LQNLKK KP
Sbjct: 51 MAEFGNDNSNNQESQQVCTFFKKPTKSKNIRKRTIDADEEDGDSKSESSILQNLKKVAKP 110
Query: 57 DSKLYFSTGPSKRDTSADSNADSEKPIFQFESSKEIQVQHDSKATATLETETDFLRDSRA 116
DS LYFS+GPS R + A E+P+F ++SSKEIQVQ+DS ATATLETETDF +D+RA
Sbjct: 111 DSNLYFSSGPSTRTSGA-----PERPVFHYDSSKEIQVQNDSGATATLETETDFNQDARA 165
Query: 117 LREKVLKRSEEALKG--KASGDEKLYKGIHGYVDHKAGFRREHTVSSEKAGGSHGPLRAS 174
+RE+VLK+++ ALKG K + DEKLYKGIHGY DHKAGFRRE T+SSEKAGGSHGPLRAS
Sbjct: 166 IRERVLKKADHALKGNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGGSHGPLRAS 225
Query: 175 AHIRVTARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKARKRN 234
AHIRV+ARFDYQPDICKDYKETGYCGYGDSCKF+HDRGDYK GWQ+EKEWEEAEK RKRN
Sbjct: 226 AHIRVSARFDYQPDICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRKRN 285
Query: 235 LALGGGDSDEEGVGQSDDDDEDSLPFACFICRKPFVDPVVTKCKHYFCEHCALK 288
A+ G + D++ + D+DE++LPFACFICR+PF+DPVVTKCKHYFCEHCALK
Sbjct: 286 KAM-GVEDDDDEADKDSDEDENALPFACFICREPFLDPVVTKCKHYFCEHCALK 338
>sp|Q8GX84|C3H1_ARATH Zinc finger CCCH domain-containing protein 1 OS=Arabidopsis
thaliana GN=At1g01350 PE=2 SV=2
Length = 343
Score = 419 bits (1076), Expect = e-116, Method: Compositional matrix adjust.
Identities = 209/287 (72%), Positives = 247/287 (86%), Gaps = 7/287 (2%)
Query: 6 SGEAQQAEQVCNFFRKPTKNKNIRKRTIREDE-DEDS-IESSVLQNLKKPTKPDSKLYFS 63
+ + Q++QVC FF+KPTK+KNIRKRTI DE D DS ESS+LQNLKK KPDSKLYFS
Sbjct: 20 AAQETQSQQVCTFFKKPTKSKNIRKRTIDADEEDGDSKSESSILQNLKKVAKPDSKLYFS 79
Query: 64 TGPSKRDTSADSNADSEKPIFQFESSKEIQVQHDSKATATLETETDFLRDSRALREKVLK 123
+GPSK T+ ++ E+ +F ++SSKEIQVQ+DS ATATLETETDF +D+RA+RE+VLK
Sbjct: 80 SGPSKSSTT--TSGAPERSVFHYDSSKEIQVQNDSGATATLETETDFNQDARAIRERVLK 137
Query: 124 RSEEALKG--KASGDEKLYKGIHGYVDHKAGFRREHTVSSEKAGGSHGPLRASAHIRVTA 181
+++EALKG K + DEKLYKGIHGY DHKAGFRRE T+SSEKAGGSHGPLRASAHIRV+A
Sbjct: 138 KADEALKGNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGGSHGPLRASAHIRVSA 197
Query: 182 RFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKARKRNLALGGGD 241
RFDYQPDICKDYKETGYCGYGDSCKF+HDRGDYK GWQ+EKEWEEAEK RKRN A+ G +
Sbjct: 198 RFDYQPDICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRKRNKAM-GVE 256
Query: 242 SDEEGVGQSDDDDEDSLPFACFICRKPFVDPVVTKCKHYFCEHCALK 288
+++ + D+DE++LPFACFICR+PFVDPVVTKCKHYFCEHCALK
Sbjct: 257 DEDDEADKDSDEDENALPFACFICREPFVDPVVTKCKHYFCEHCALK 303
>sp|Q6K4V3|C3H15_ORYSJ Zinc finger CCCH domain-containing protein 15 OS=Oryza sativa
subsp. japonica GN=Os02g0301000 PE=2 SV=1
Length = 326
Score = 316 bits (810), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 183/284 (64%), Positives = 216/284 (76%), Gaps = 20/284 (7%)
Query: 15 VCNFFRKPTKNKNIRKRTIREDEDEDSIESSVLQNLKKPTKPDS--KLYFSTGPSKRDTS 72
VC+F RKP KN R +D+D S + + P S KL+FS S
Sbjct: 18 VCSFVRKPPKNIRKRPTAPAGSDDDDEDGSGAIAAARAKKAPSSTSKLFFS--------S 69
Query: 73 ADSNADSEKPIFQFESSKEIQVQHDSKATATLETETDFLRDSRALREKVLKRSEEALK-- 130
AD +++ + FQ+ESS+ IQ DS+ATATLETET+F RD+RA+RE+ LK++EE+LK
Sbjct: 70 ADGSSEPRR--FQYESSRTIQASTDSRATATLETETEFDRDARAIRERQLKQAEESLKKN 127
Query: 131 ------GKASGDEKLYKGIHGYVDHKAGFRREHTVSSEKAGGSHGPLRASAHIRVTARFD 184
SG ++YKGIHGY D+KAGFRREHTVSSEKAGGSHGPLRASAHIR++ARFD
Sbjct: 128 PSAPASSSGSGSGEVYKGIHGYTDYKAGFRREHTVSSEKAGGSHGPLRASAHIRLSARFD 187
Query: 185 YQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKARKRNLALGGGDSDE 244
YQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQ+EKEWEEAEKARKR +A+GG SD
Sbjct: 188 YQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQIEKEWEEAEKARKRRIAMGGDGSDY 247
Query: 245 EGVGQSDDDDEDSLPFACFICRKPFVDPVVTKCKHYFCEHCALK 288
E + DDDDE++LPFAC+ICR+PFVDPVVTKCKHYFCEHCALK
Sbjct: 248 EAGEEDDDDDEEALPFACYICREPFVDPVVTKCKHYFCEHCALK 291
>sp|O15541|R113A_HUMAN RING finger protein 113A OS=Homo sapiens GN=RNF113A PE=1 SV=1
Length = 343
Score = 174 bits (442), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 93/193 (48%), Positives = 127/193 (65%), Gaps = 18/193 (9%)
Query: 97 DSKATATLETETDFLRDSRALREKVLKRSEEALKGKASGDEKLYKGIHGYVDHKAGFRRE 156
D ATA E +T+ RD++A+ E+ K EE L+GK D+K+Y+GI+ Y K ++
Sbjct: 113 DMGATAVYELDTEKERDAQAIFERSQKIQEE-LRGKE--DDKIYRGINNY--QKYMKPKD 167
Query: 157 HTVSSEKAGGSH-GPLRASAHIRVTARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYK 215
++ + +G GP+RA H+R T R+DYQPDICKDYKETG+CG+GDSCKF+HDR DYK
Sbjct: 168 TSMGNASSGMVRKGPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYK 227
Query: 216 SGWQMEKEWEEAEKARKRNLALGGGDSDEEGVGQSDDDDEDSLPFACFICRKPFVDPVVT 275
GWQ+E+E +E G ++E DD+E +PF CFICR+ F +PVVT
Sbjct: 228 HGWQIERELDEGRY----------GVYEDENYEVGSDDEE--IPFKCFICRQSFQNPVVT 275
Query: 276 KCKHYFCEHCALK 288
KC+HYFCE CAL+
Sbjct: 276 KCRHYFCESCALQ 288
>sp|Q67ER4|R113A_BOVIN RING finger protein 113A OS=Bos taurus GN=RNF113A PE=2 SV=1
Length = 343
Score = 174 bits (441), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 92/193 (47%), Positives = 127/193 (65%), Gaps = 18/193 (9%)
Query: 97 DSKATATLETETDFLRDSRALREKVLKRSEEALKGKASGDEKLYKGIHGYVDHKAGFRRE 156
D ATA E +T+ RD++A+ E+ K EE L+G+ D+K+Y+GI+ Y K ++
Sbjct: 113 DMGATAVYELDTEKERDAQAIFERSQKIQEE-LRGQE--DDKIYRGINNY--QKFMKPKD 167
Query: 157 HTVSSEKAGGSH-GPLRASAHIRVTARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYK 215
++ + +G GP+RA H+R T R+DYQPDICKDYKETG+CG+GDSCKF+HDR DYK
Sbjct: 168 TSMGNASSGMVRKGPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYK 227
Query: 216 SGWQMEKEWEEAEKARKRNLALGGGDSDEEGVGQSDDDDEDSLPFACFICRKPFVDPVVT 275
GWQ+E+E +E G + + VG DE+ +PF CFICR+ F +PVVT
Sbjct: 228 HGWQIERELDEGR--------YGVYEDENYEVG----SDEEEIPFKCFICRQTFQNPVVT 275
Query: 276 KCKHYFCEHCALK 288
KC+HYFCE CAL+
Sbjct: 276 KCRHYFCESCALQ 288
>sp|Q8IZP6|R113B_HUMAN RING finger protein 113B OS=Homo sapiens GN=RNF113B PE=1 SV=3
Length = 322
Score = 174 bits (441), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 106/289 (36%), Positives = 162/289 (56%), Gaps = 26/289 (8%)
Query: 9 AQQAEQVCNF-FRKPTKN--KNIRKRTIREDEDEDSIES-----SVLQNLKKPTKPDSKL 60
A QA+QVC F F+KP + +RKR + E +S S +V Q + +P
Sbjct: 11 ADQADQVCTFLFKKPGRKGAAGLRKRPACDPEHGESSSSGDEGDTVAQPPRVAPRPRGLH 70
Query: 61 YFSTGPSKRDTSADSNADSEKPIFQFESSKEIQVQHDSKATATLETETDFLRDSRALREK 120
+ ++ +S +++ S + D ATA E +T+ + + K
Sbjct: 71 SWQKAAHGDRRGEEAAPESLDVVYRSTRSAKPVGPEDMGATADFEQDTEKEHHTPTIL-K 129
Query: 121 VLKRSEEALKGKASGDEKLYKGIHGYVDHKAGFRREHTVSSEKAGGSH-GPLRASAHIRV 179
+R +EAL+G+ + +Y+GIH Y+ + ++ ++ + +G + GP+RA H+R
Sbjct: 130 CSQRVQEALRGREH--DHIYRGIHSYLRYLKP--KDTSMGNSSSGMARKGPIRAPGHLRA 185
Query: 180 TARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKARKRNLALGG 239
T R+DYQPDICKDYKETG+CG+GDSCKF+HDR DYK GW++E+E EE +
Sbjct: 186 TVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKLGWEIERELEEG------RYCICE 239
Query: 240 GDSDEEGVGQSDDDDEDSLPFACFICRKPFVDPVVTKCKHYFCEHCALK 288
++ E G +E+ +PF CFICR+ F +PVVTKC+HYFCE CAL+
Sbjct: 240 DENHEVG------SEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALE 282
>sp|O17917|RN113_CAEEL RING finger protein 113 homolog OS=Caenorhabditis elegans
GN=rnf-113 PE=2 SV=2
Length = 384
Score = 162 bits (411), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 111/288 (38%), Positives = 153/288 (53%), Gaps = 38/288 (13%)
Query: 17 NFFRKPTKNKN--IRKRTIREDEDEDSIESSVLQNLKKPTKP--------DSKLYFSTGP 66
+ FRKP K +RK+ DED+DS V+Q ++ T P D+ +
Sbjct: 2 DLFRKPKKRNAPVVRKKESSSDEDQDSEVKDVIQKRRR-TNPMVQSTKQLDASTRRADNS 60
Query: 67 SKRDTSADSNADSEKPIFQFESSKEIQVQ--HDSKATATLETETDFLRDSRALREKVLKR 124
S +D N D F +S + D ATATLE +TD+ D++A E+V ++
Sbjct: 61 SDDSDDSDDNQDIAVATHSFAASGDAGPSGPRDQGATATLEVDTDYSHDAQAQFERVQQQ 120
Query: 125 SEEALK--GKASGDEKLYKGIHGYVDHKAGFRREHTVSSEKAGGSH--GPLRASAHIRVT 180
+E ++ GK LYKG Y +A + T A G + GP+RA +R T
Sbjct: 121 LKEGVEKDGKI-----LYKGSALYGAKEA----KDTAKGNAASGYNRVGPVRAPQFLRQT 171
Query: 181 ARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKARKRNLALGGG 240
R+D+ PDICKDYKETG+C +GDSCKF+HDR DYK GW++++E+E + G
Sbjct: 172 VRWDFAPDICKDYKETGFCTFGDSCKFVHDRSDYKHGWEIDEEYEAGK--------YGAE 223
Query: 241 DSDEEGVGQSDDDDEDSLPFACFICRKPFVDPVVTKCKHYFCEHCALK 288
D + + D D+ P CFIC PFVDP+VTKCKHYFC CALK
Sbjct: 224 DDANYEIHEGD----DTFPEDCFICGNPFVDPIVTKCKHYFCTGCALK 267
>sp|Q4P400|CWC24_USTMA Pre-mRNA-splicing factor CWC24 OS=Ustilago maydis (strain 521 /
FGSC 9021) GN=CWC24 PE=3 SV=1
Length = 355
Score = 161 bits (408), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 94/247 (38%), Positives = 123/247 (49%), Gaps = 32/247 (12%)
Query: 50 LKKPTKPDSKLYFSTGPSKRDTSADSNADSEKPIFQFESSKEIQVQHDSKATATLETETD 109
+KK + + L STG R + D EK E V D A L + +
Sbjct: 68 IKKKRRSANPLVQSTGRVYRKLKLSGSLDGEK---------ENSVDADESGDAGLTSSSI 118
Query: 110 FLRDSRALREKVLKRSEEAL--------KGKASGDEKLYKGIHGYVDHKAGFRREHTVSS 161
+ +RE + S+ L G S + LY+G Y A F R
Sbjct: 119 ASSSLQKMREDATRNSDWDLDTAGTLKETGVTSNSDGLYRGAKSY----ASFTRTRDDGC 174
Query: 162 EKAGGSHGPLRASAHIRVTARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQME 221
S GP+R + +R T+ DYQPD+CKDYKETGYCG+GD+CKF+HDR DY +GWQ++
Sbjct: 175 SSKMRSRGPIRQTTTVRTTSLIDYQPDVCKDYKETGYCGFGDTCKFLHDRSDYLAGWQLD 234
Query: 222 KEWEEAEKARKRNLALGGGDSDEEGVGQSDDDDEDSLPFACFICRKPFVDPVVTKCKHYF 281
+ + R+ L SD E D D ED +PFAC ICRK F DPVVT+C HYF
Sbjct: 235 VLPNSSSRTRENML------SDPE-----DSDTEDDIPFACLICRKAFTDPVVTRCAHYF 283
Query: 282 CEHCALK 288
C CA+K
Sbjct: 284 CSSCAIK 290
>sp|Q55G16|RN113_DICDI RING finger protein 113 homolog OS=Dictyostelium discoideum
GN=rnf113 PE=4 SV=1
Length = 355
Score = 154 bits (390), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 108/162 (66%), Gaps = 5/162 (3%)
Query: 127 EALKGKASGDEKLYKGIHGYVDHKAGFRREHTVSSEKAGGSH-GPLRASAHIRVTARFDY 185
E G + D+ +Y+G+ Y + F + + + K GG GP++ S +++ R D+
Sbjct: 155 EGSGGSDNNDDGIYRGMKSY----STFVEKKSDLTYKGGGVKAGPMKTSTTFKLSNRIDH 210
Query: 186 QPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKARKRNLALGGGDSDEE 245
QPD+CKDYK+TG C +GD+CKF+HDR DYKSGWQ++KE+EE +K ++ N G +++ +
Sbjct: 211 QPDVCKDYKQTGQCTFGDACKFLHDRSDYKSGWQIDKEYEEEQKQKRLNNINGIKNNNND 270
Query: 246 GVGQSDDDDEDSLPFACFICRKPFVDPVVTKCKHYFCEHCAL 287
DD ++ PFACFIC+K +VDPV TKCKH+FCE CAL
Sbjct: 271 NKNNDDDKEQQQFPFACFICKKQYVDPVQTKCKHFFCEDCAL 312
>sp|Q9P6R8|CWC24_SCHPO Pre-mRNA-splicing factor cwf24 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cwf24 PE=1 SV=1
Length = 533
Score = 142 bits (359), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 123/212 (58%), Gaps = 26/212 (12%)
Query: 85 QFESS--KEIQVQHDSKATATLET--ETDFLRDSRALREKVLKRSEEALKGKASGDEKLY 140
QFE+S K+I V++ S +AT E+ T + RE +L R L +++ +L+
Sbjct: 85 QFENSALKDINVEYQSNLSATGESVNTTTVSAINEDTREVILGRPSPKLANQSTLPTELF 144
Query: 141 KGIHGY---VDHKAGFRREHTVSSEKAGGSHGPLRAS--AHIRVTARFDYQPDICKDYKE 195
+ + Y + + F ++ V GP+ +S + +R+ DYQPD+CKDYK
Sbjct: 145 QSQNDYSRFLPKRKDFEKKSQV---------GPVLSSNASTVRMNTIIDYQPDVCKDYKL 195
Query: 196 TGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKARKRNLALGGGDSDEEGVGQSDDDDE 255
TGYCGYGD+CKF+H R DYK+GWQ+++EW+ ++ K+ G EEG+ + ++ +
Sbjct: 196 TGYCGYGDTCKFLHMREDYKAGWQLDREWDSVQEKYKK------GAKLEEGMVK--NEKK 247
Query: 256 DSLPFACFICRKPFVDPVVTKCKHYFCEHCAL 287
+ +PF C IC+K + P+ T C H+FCE CA+
Sbjct: 248 EDIPFVCLICKKDYRSPIATTCGHHFCEQCAI 279
>sp|Q5AVC5|CWC24_EMENI Pre-mRNA-splicing factor cwc24 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cwc24
PE=3 SV=1
Length = 332
Score = 142 bits (357), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 76/181 (41%), Positives = 109/181 (60%), Gaps = 22/181 (12%)
Query: 117 LREKVL---KRSEEALKGKASGDEKLYKGIHGYVDHKAGFRREHTVSSEKAGGSHGPLRA 173
L EK L R+ A G A + YKG Y F +++ + K + GP++A
Sbjct: 100 LNEKNLLGTTRARPAATG-ADAPDGTYKGAANYQS----FIQKNPNAPAK---TFGPIKA 151
Query: 174 SAHIRVTARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKARKR 233
++R DY PD+CKDYK TGYCG+GDSCKF H R DYK GW+++++WE + K +
Sbjct: 152 PTNVRTVTFMDYAPDVCKDYKLTGYCGFGDSCKFSHMREDYKQGWELDRDWEVSTKGKN- 210
Query: 234 NLALGGGDSDEEGVGQSDDDDE------DSLPFACFICRKPFVDPVVTKCKHYFCEHCAL 287
LGG + G GQ+ +D++ +++PFAC IC+KP+ +P+VTKC HYFCE CAL
Sbjct: 211 ---LGGKVVSQRG-GQAGEDEDDEEEQLENIPFACIICKKPYQNPIVTKCGHYFCESCAL 266
Query: 288 K 288
+
Sbjct: 267 Q 267
>sp|P0CQ64|CWC24_CRYNJ Pre-mRNA-splicing factor CWC24 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=CWC24 PE=3 SV=1
Length = 329
Score = 140 bits (354), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 91/273 (33%), Positives = 140/273 (51%), Gaps = 30/273 (10%)
Query: 20 RKPTKNKNIRKRTIREDEDEDSIESSVLQNLKKPTKPDSKLYFSTGPSKRDTSADSNADS 79
R+P +++ R+ D ++ S+ N+ +P + G +R T+A++ +
Sbjct: 17 RRPAQSRQRRRSPSPLDPVAEASASASGSNVVRPERKSLANPLVQGTKRRRTNANNEEEE 76
Query: 80 EKP---IFQFESSKEIQVQHDSKATATLETETDFL-RDSRALREKVLKRSEEALKGKASG 135
+ + +F+ + E + AT + D D + R+K ++ E+ G+
Sbjct: 77 DGVGGGLDEFDYAAEGGLTRKGDELATRANDWDLEDVDGQGQRDKKVRLDED---GEIVT 133
Query: 136 DEKLYKGIHGYVDHKAGFRREHTVSSEKAGGSHGPLRASAHIRVTARFDYQPDICKDYKE 195
D+ LY+G Y+ RE K+G P++A++H+R DYQPD+CKDYKE
Sbjct: 134 DDGLYRGASAYL-PTINKTRETLDKKMKSG----PIKATSHVRTITLMDYQPDVCKDYKE 188
Query: 196 TGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKARKRNLALGGGDSDEEGVGQSDDDDE 255
TG+CGYGDSCKF+HDRGDY +GWQ++K EE + + E
Sbjct: 189 TGFCGYGDSCKFLHDRGDYLAGWQLDKLPEEGVREVEEEDE------------------E 230
Query: 256 DSLPFACFICRKPFVDPVVTKCKHYFCEHCALK 288
+ +PFAC ICR+PF PVVTKC HYFC CA K
Sbjct: 231 EEVPFACLICRQPFTQPVVTKCGHYFCMGCAAK 263
>sp|P0CQ65|CWC24_CRYNB Pre-mRNA-splicing factor CWC24 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=CWC24 PE=3
SV=1
Length = 329
Score = 140 bits (354), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 91/273 (33%), Positives = 140/273 (51%), Gaps = 30/273 (10%)
Query: 20 RKPTKNKNIRKRTIREDEDEDSIESSVLQNLKKPTKPDSKLYFSTGPSKRDTSADSNADS 79
R+P +++ R+ D ++ S+ N+ +P + G +R T+A++ +
Sbjct: 17 RRPAQSRQRRRSPSPLDPVAEASASASGSNVVRPERKSLANPLVQGTKRRRTNANNEEEE 76
Query: 80 EKP---IFQFESSKEIQVQHDSKATATLETETDFL-RDSRALREKVLKRSEEALKGKASG 135
+ + +F+ + E + AT + D D + R+K ++ E+ G+
Sbjct: 77 DGVGGGLDEFDYAAEGGLTRKGDELATRANDWDLEDVDGQGQRDKKVRLDED---GEIVT 133
Query: 136 DEKLYKGIHGYVDHKAGFRREHTVSSEKAGGSHGPLRASAHIRVTARFDYQPDICKDYKE 195
D+ LY+G Y+ RE K+G P++A++H+R DYQPD+CKDYKE
Sbjct: 134 DDGLYRGASAYL-PTINKTRETLDKKMKSG----PIKATSHVRTITLMDYQPDVCKDYKE 188
Query: 196 TGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKARKRNLALGGGDSDEEGVGQSDDDDE 255
TG+CGYGDSCKF+HDRGDY +GWQ++K EE + + E
Sbjct: 189 TGFCGYGDSCKFLHDRGDYLAGWQLDKLPEEGVREVEEEDE------------------E 230
Query: 256 DSLPFACFICRKPFVDPVVTKCKHYFCEHCALK 288
+ +PFAC ICR+PF PVVTKC HYFC CA K
Sbjct: 231 EEVPFACLICRQPFTQPVVTKCGHYFCMGCAAK 263
>sp|Q4WUA0|CWC24_ASPFU Pre-mRNA-splicing factor cwc24 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=cwc24
PE=3 SV=1
Length = 339
Score = 134 bits (337), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 86/125 (68%), Gaps = 5/125 (4%)
Query: 169 GPLRASAHIRVTARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAE 228
GP++A ++R D+ PD+CKD+K+TG+CG+GDSCKF+H R DYK GW++++EWE
Sbjct: 155 GPIKAPTNVRTVTVMDFAPDVCKDWKQTGFCGFGDSCKFLHAREDYKQGWELDREWEIGT 214
Query: 229 KARK---RNLALGGGDSD--EEGVGQSDDDDEDSLPFACFICRKPFVDPVVTKCKHYFCE 283
K ++ R ++ GD+ E+ D++ +S+PFAC IC+ + P+VTKC HYFCE
Sbjct: 215 KGKQLSGRVVSKRSGDAKTAEDDEDDDDEELLESIPFACIICKSSYKSPIVTKCGHYFCE 274
Query: 284 HCALK 288
CAL+
Sbjct: 275 SCALQ 279
>sp|Q7SDY3|CWC24_NEUCR Pre-mRNA-splicing factor cwc-24 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=cwc-24 PE=3 SV=1
Length = 405
Score = 132 bits (332), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 58/132 (43%), Positives = 82/132 (62%), Gaps = 12/132 (9%)
Query: 169 GPLRASAHIRVTARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAE 228
GP++A ++IR D PD+CKDYK+TG+CG+GD+CKF+H R DY GWQ++KEWE
Sbjct: 206 GPIKAPSNIRTITITDMAPDVCKDYKQTGFCGFGDNCKFLHAREDYAHGWQLDKEWENVT 265
Query: 229 KARKRNLALGGGDSDEEGVGQS-----------DDDDEDSLPFACFICRKPFVD-PVVTK 276
K +K +D ++ ++ +++PFAC ICR P+ + PVVT+
Sbjct: 266 KGKKNLQGTVVASADRRNKPKNTAEEEEDADAAEEALLENIPFACIICRGPYSNSPVVTR 325
Query: 277 CKHYFCEHCALK 288
C HYFCE CALK
Sbjct: 326 CGHYFCEACALK 337
>sp|Q6CB23|CWC24_YARLI Pre-mRNA-splicing factor CWC24 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=CWC24 PE=3 SV=1
Length = 256
Score = 126 bits (316), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/117 (50%), Positives = 74/117 (63%), Gaps = 3/117 (2%)
Query: 171 LRASAHIRVTARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKA 230
L+AS++I+ T DYQPD+CKDYK TG+CGYGDSCKF+H R DYK+GWQ+E+EWE +
Sbjct: 118 LKASSNIKSTTSQDYQPDVCKDYKLTGFCGYGDSCKFLHMREDYKAGWQIEREWEIKNRE 177
Query: 231 RKRNLALGGGDSDEEGVGQSDDDDEDSLPFACFICRKPFVDPVVTKCKHYFCEHCAL 287
GG D + D +P C IC+ F PVVT+C HYFCE C L
Sbjct: 178 DDPPRDAGGVSRDADTATSRAD---SGIPDTCPICQGEFKSPVVTQCCHYFCEKCFL 231
>sp|P53769|CWC24_YEAST Pre-mRNA-splicing factor CWC24 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=CWC24 PE=1 SV=1
Length = 259
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 71/118 (60%), Gaps = 17/118 (14%)
Query: 171 LRASAHIRVTARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKA 230
+ +IR T D+QPD+CKDYK+TGYCGYGDSCKF+H R D+K+GW++ +EW A+K
Sbjct: 125 INQPTNIRTTVLMDFQPDVCKDYKQTGYCGYGDSCKFLHSRDDFKTGWKLNQEW-NADKE 183
Query: 231 RKRNLALGGGDSDEEGVGQSDDDDEDSLPFACFICRKPFVDPVVTKCKHYFCEHCALK 288
+ + L D + +PF C +C++ + PVVT C HYFC C K
Sbjct: 184 DSKAVTL----------------DLEKIPFKCTLCKEDYKSPVVTNCGHYFCGSCFAK 225
>sp|Q752S4|CWC24_ASHGO Pre-mRNA-splicing factor CWC24 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=CWC24
PE=3 SV=1
Length = 250
Score = 119 bits (297), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 69/111 (62%), Gaps = 21/111 (18%)
Query: 175 AHIRVTARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKARKRN 234
+++R DYQPD+CKDY++TG+CGYGDSCKF+H R D+++GW++ +EW+
Sbjct: 92 SNVRTRVVMDYQPDVCKDYRQTGFCGYGDSCKFLHSRDDFRAGWRLNEEWK--------- 142
Query: 235 LALGGGDSDEEGVGQSDDDDEDSLPFACFICRKPFVDPVVTKCKHYFCEHC 285
VGQ++ D DS+PF C +CR + PV T+C HYFC C
Sbjct: 143 ------------VGQTEARDLDSIPFRCVLCRGHYRAPVRTRCGHYFCGGC 181
>sp|Q6CSS6|CWC24_KLULA Pre-mRNA-splicing factor CWC24 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=CWC24 PE=3 SV=1
Length = 229
Score = 112 bits (279), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 71/126 (56%), Gaps = 19/126 (15%)
Query: 163 KAGGSHGPLRASAHIRVTARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEK 222
K G P+ S +++ DYQPDICKD+++TGYCGYGDSCKF+H R D GW++
Sbjct: 91 KVSGFVKPV--SKNMKTVTITDYQPDICKDFQKTGYCGYGDSCKFLHSRDDVAGGWKLNT 148
Query: 223 EWEEAEKARKRNLALGGGDSDEEGVGQSDDDDEDSLPFACFICRKPFVDPVVTKCKHYFC 282
+W+ +E + + + +PF CF+C+K + PVVTKC HYFC
Sbjct: 149 DWKV-----------------DETQEKEVLKELEEIPFRCFLCKKEYTSPVVTKCNHYFC 191
Query: 283 EHCALK 288
C +K
Sbjct: 192 SSCFMK 197
>sp|Q6FXX1|CWC24_CANGA Pre-mRNA-splicing factor CWC24 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=CWC24 PE=3 SV=1
Length = 226
Score = 111 bits (278), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 72/120 (60%), Gaps = 20/120 (16%)
Query: 166 GSHGPLRASAHIRVTARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWE 225
S ++ +A++R T D+QPD+CKD+K+TGYCGYGDSCKF+H R D+K+GW + +W+
Sbjct: 89 ASSKKIQQAANLRNTILTDFQPDVCKDFKQTGYCGYGDSCKFLHSRDDFKAGWTLATDWK 148
Query: 226 EAEKARKRNLALGGGDSDEEGVGQSDDDDEDSLPFACFICRKPFVDPVVTKCKHYFCEHC 285
E Q ++ ++++PF C +C++ + PV T C HYFC+ C
Sbjct: 149 IDE--------------------QKEETRKEAVPFKCVLCKESYERPVKTNCGHYFCQKC 188
>sp|Q6BYU0|CWC24_DEBHA Pre-mRNA-splicing factor CWC24 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=CWC24 PE=3 SV=2
Length = 232
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 73/131 (55%), Gaps = 21/131 (16%)
Query: 160 SSEKAGG--SHGPLRASA-HIRVTARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKS 216
+++K+ G S GP++ I+ T D+QPD+CKD+ +TGYCGYGD+CKF+H R + K
Sbjct: 85 TTDKSAGEKSVGPIKPPPISIKTTTITDFQPDVCKDFLQTGYCGYGDTCKFLHIRDESKQ 144
Query: 217 GWQMEKEWEEAEKARKRNLALGGGDSDEEGVGQSDDDDEDSLPFACFICRKPFVDPVVTK 276
+EKEWE + +K D ++ +P+ C +C K + PV T+
Sbjct: 145 RKPIEKEWETVTEQQK------------------PDKSKEQVPYRCVLCSKDYTSPVKTE 186
Query: 277 CKHYFCEHCAL 287
C H FC+ C +
Sbjct: 187 CNHLFCQKCFM 197
>sp|Q5ACW2|CWC24_CANAL Pre-mRNA-splicing factor CWC24 OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=CWC24 PE=3 SV=1
Length = 216
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 73/130 (56%), Gaps = 22/130 (16%)
Query: 158 TVSSEKAGGSHGPLRASAHIRVTARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSG 217
VS + G PL +A+I+ T D+QPD+CKD+++ GYCGYGD+CKF+H R + +
Sbjct: 74 VVSQKSKKGELKPL--AANIKTTIITDFQPDVCKDFQQIGYCGYGDTCKFLHVRDESRQK 131
Query: 218 WQMEKEWEEAEKARKRNLALGGGDSDEEGVGQSDDDDEDSLPFACFICRKPFVDPVVTKC 277
++K+WE +G GQ + +++ +PF C +C+ + P+ T+C
Sbjct: 132 IPIKKDWE-----------IG---------GQKEVKEKEDIPFKCVLCKSDYKSPIKTEC 171
Query: 278 KHYFCEHCAL 287
H FC+ C L
Sbjct: 172 GHIFCKACFL 181
>sp|Q02084|A33_PLEWA Zinc-binding protein A33 OS=Pleurodeles waltl PE=1 SV=2
Length = 625
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 227 AEKARKRNLALGGGDSDEEGVGQSDDDDEDSLPFACFICRKPFVDPVVTKCKHYFCEHC 285
A ++ KR + G GD + V +DD + L C +CR F +PV+ +C H FC+HC
Sbjct: 130 AARSNKRKIEDGDGDQKKRKVDDEEDDFTEDL--TCPLCRSLFKEPVILECGHNFCKHC 186
>sp|Q9FKA7|ORTH1_ARATH E3 ubiquitin-protein ligase ORTHRUS 1 OS=Arabidopsis thaliana
GN=ORTH1 PE=1 SV=1
Length = 617
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 219 QMEKEWEEAEKARKRNLALGGGDSDEEGVGQSDDDDEDSLPFACFICRKPFVDPVVTKCK 278
Q ++ EAEKA+KR + GG D GV D++++ L C IC + P+ T C
Sbjct: 91 QADETLTEAEKAKKRQKLMSGGGDD--GV---DEEEKKKLEIFCSICIQLPERPITTPCG 145
Query: 279 HYFCEHC 285
H FC C
Sbjct: 146 HNFCLKC 152
Score = 35.4 bits (80), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 260 FACFICRKPFVDPVVTKCKHYFCEHC 285
F+C ICR+ PV T C H FC+ C
Sbjct: 493 FSCQICREVLSLPVTTPCAHNFCKAC 518
>sp|Q6Q0C0|TRAF7_HUMAN E3 ubiquitin-protein ligase TRAF7 OS=Homo sapiens GN=TRAF7 PE=1
SV=1
Length = 670
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 254 DEDSLPFACFICRKPFVDPVVTKCKHYFCEHCALK 288
++ S+ C +C F DPV+T C H FC CALK
Sbjct: 123 EQPSVKLCCQLCCSVFKDPVITTCGHTFCRRCALK 157
>sp|Q6BLM3|RAD18_DEBHA Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=RAD18 PE=3 SV=2
Length = 491
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 233 RNLALGGGDSDEEGVGQSDDDDEDSLPFACFICRKPFVDPVVTKCKHYFCEHC 285
+NL SD E + + DSL C+IC++ PV+T C H FC HC
Sbjct: 8 KNLQNVTDPSDWEPTKLPNLKELDSLQ-RCYICKEFLKAPVITSCNHTFCSHC 59
>sp|Q922B6|TRAF7_MOUSE E3 ubiquitin-protein ligase TRAF7 OS=Mus musculus GN=Traf7 PE=1
SV=1
Length = 594
Score = 40.4 bits (93), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 254 DEDSLPFACFICRKPFVDPVVTKCKHYFCEHCALK 288
++ S+ C +C F DPV+T C H FC CALK
Sbjct: 47 EQPSVKLCCQLCCSVFKDPVITTCGHTFCRRCALK 81
>sp|Q17RB8|LONF1_HUMAN LON peptidase N-terminal domain and RING finger protein 1 OS=Homo
sapiens GN=LONRF1 PE=2 SV=2
Length = 773
Score = 39.7 bits (91), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Query: 235 LALGGGDSDEEGVGQSDDDDEDSLPFACFICRKPFVDPVVTKCKHYFCEHC 285
+L GD EE + SD F C +C + F +PV T C H FC++C
Sbjct: 460 FSLAYGDIPEELIDVSD--------FECSLCMRLFFEPVTTPCGHSFCKNC 502
>sp|Q8BVP1|TRIML_MOUSE Probable E3 ubiquitin-protein ligase TRIML1 OS=Mus musculus
GN=Triml1 PE=1 SV=1
Length = 470
Score = 39.3 bits (90), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 242 SDEEGVGQSDDDDEDSLPFACFICRKPFVDPVVTKCKHYFCEHCALK 288
S+ E + +D + CFIC F PV T+C H FC C LK
Sbjct: 2 SNHEKMSTTDLMENLREELTCFICLDYFSSPVTTECGHSFCLMCLLK 48
>sp|Q91829|RAG1_XENLA V(D)J recombination-activating protein 1 OS=Xenopus laevis GN=rag1
PE=2 SV=1
Length = 1045
Score = 38.5 bits (88), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 261 ACFICRKPFVDPVVTKCKHYFCEHCALK 288
+C +C DPV T CKH FC C LK
Sbjct: 293 SCLVCEHILSDPVQTSCKHLFCRICILK 320
>sp|Q6J6J0|BRCA1_PONPY Breast cancer type 1 susceptibility protein homolog OS=Pongo
pygmaeus GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 38.5 bits (88), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 260 FACFICRKPFVDPVVTKCKHYFCEHCALKV 289
C IC + +PV TKC H FC+ C LK+
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKL 51
>sp|P38398|BRCA1_HUMAN Breast cancer type 1 susceptibility protein OS=Homo sapiens
GN=BRCA1 PE=1 SV=2
Length = 1863
Score = 38.5 bits (88), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 260 FACFICRKPFVDPVVTKCKHYFCEHCALKV 289
C IC + +PV TKC H FC+ C LK+
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKL 51
>sp|Q9GKK8|BRCA1_PANTR Breast cancer type 1 susceptibility protein homolog OS=Pan
troglodytes GN=BRCA1 PE=2 SV=2
Length = 1863
Score = 38.5 bits (88), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 260 FACFICRKPFVDPVVTKCKHYFCEHCALKV 289
C IC + +PV TKC H FC+ C LK+
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKL 51
>sp|Q864U1|BRCA1_BOVIN Breast cancer type 1 susceptibility protein homolog OS=Bos taurus
GN=BRCA1 PE=1 SV=1
Length = 1849
Score = 38.1 bits (87), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 260 FACFICRKPFVDPVVTKCKHYFCEHCALKV 289
C IC + +PV TKC H FC+ C LK+
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKL 51
>sp|Q6J6I8|BRCA1_GORGO Breast cancer type 1 susceptibility protein homolog OS=Gorilla
gorilla gorilla GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 38.1 bits (87), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 260 FACFICRKPFVDPVVTKCKHYFCEHCALKV 289
C IC + +PV TKC H FC+ C LK+
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKL 51
>sp|Q95153|BRCA1_CANFA Breast cancer type 1 susceptibility protein homolog OS=Canis
familiaris GN=BRCA1 PE=3 SV=1
Length = 1878
Score = 38.1 bits (87), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 260 FACFICRKPFVDPVVTKCKHYFCEHCALKV 289
C IC + +PV TKC H FC+ C LK+
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKL 51
>sp|P19474|RO52_HUMAN E3 ubiquitin-protein ligase TRIM21 OS=Homo sapiens GN=TRIM21 PE=1
SV=1
Length = 475
Score = 38.1 bits (87), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 261 ACFICRKPFVDPVVTKCKHYFCEHCALKV 289
C IC PFV+PV +C H FC+ C +V
Sbjct: 15 TCPICLDPFVEPVSIECGHSFCQECISQV 43
>sp|Q6J6I9|BRCA1_MACMU Breast cancer type 1 susceptibility protein homolog OS=Macaca
mulatta GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 38.1 bits (87), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 260 FACFICRKPFVDPVVTKCKHYFCEHCALKV 289
C IC + +PV TKC H FC C LK+
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCRFCMLKL 51
>sp|P48754|BRCA1_MOUSE Breast cancer type 1 susceptibility protein homolog OS=Mus musculus
GN=Brca1 PE=1 SV=3
Length = 1812
Score = 38.1 bits (87), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 260 FACFICRKPFVDPVVTKCKHYFCEHCALKV 289
C IC + +PV TKC H FC+ C LK+
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKL 51
>sp|Q8N9V2|TRIML_HUMAN Probable E3 ubiquitin-protein ligase TRIML1 OS=Homo sapiens
GN=TRIML1 PE=1 SV=1
Length = 468
Score = 37.7 bits (86), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 260 FACFICRKPFVDPVVTKCKHYFCEHCALK 288
CFIC F PV T+C H FC C L+
Sbjct: 14 LTCFICLDYFSSPVTTECGHSFCLVCLLR 42
>sp|Q91XL2|LNX2_MOUSE Ligand of Numb protein X 2 OS=Mus musculus GN=Lnx2 PE=1 SV=2
Length = 687
Score = 37.7 bits (86), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
Query: 248 GQSDDDDEDSLPFACFICRKPFVDPVVTKCKHYFCEHC 285
G+ DDD C IC +P + P+ T C H FC C
Sbjct: 43 GEVDDD------LVCHICLQPLLQPLDTPCGHTFCHKC 74
>sp|P86449|TR43C_MOUSE Tripartite motif-containing protein 43C OS=Mus musculus GN=Trim43c
PE=2 SV=1
Length = 446
Score = 37.7 bits (86), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 252 DDDEDSLPFACFICRKPFVDPVVTKCKHYFCEHCAL 287
D E++L C IC+ F+DPV +C H FCE C L
Sbjct: 8 DPQEETL--TCSICQGIFMDPVYLRCGHKFCETCLL 41
>sp|Q338N2|C3H62_ORYSJ Zinc finger CCCH domain-containing protein 62 OS=Oryza sativa
subsp. japonica GN=Os10g0391300 PE=2 SV=2
Length = 702
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 190 CKDYKETGYCGYGDSCKFMHD 210
C Y++ G+C YG++CKFMHD
Sbjct: 680 CFIYQQQGWCPYGENCKFMHD 700
>sp|Q6L5G1|C3H39_ORYSJ Zinc finger CCCH domain-containing protein 39 OS=Oryza sativa
subsp. japonica GN=Os05g0576300 PE=2 SV=1
Length = 343
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 14/83 (16%)
Query: 135 GDEKLYKGIHGY--VDHKAGFRREHTVSSEKAGGSHGPLRASAHIRVTARFDYQPDICKD 192
G ++++ GI G +HK G ++E P V + ++ ++C
Sbjct: 229 GSQRVFVGIDGAEGGEHKVGVKKEE------------PPMGGLEFEVYNQGMFKTELCNK 276
Query: 193 YKETGYCGYGDSCKFMHDRGDYK 215
++ETG C YGD C+F H + +
Sbjct: 277 WEETGACPYGDQCQFAHGVAELR 299
>sp|P86448|TR43B_MOUSE Tripartite motif-containing protein 43B OS=Mus musculus GN=Trim43b
PE=2 SV=1
Length = 445
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 252 DDDEDSLPFACFICRKPFVDPVVTKCKHYFCEHCAL 287
D E++L C IC+ F++PV KC H FCE C L
Sbjct: 8 DPQEETL--TCSICQGIFMNPVYLKCGHKFCEACLL 41
>sp|Q803C1|RNF8_DANRE E3 ubiquitin-protein ligase RNF8 OS=Danio rerio GN=rnf8 PE=2 SV=1
Length = 485
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 244 EEGVGQSDDDDEDSLPFACFICRKPFVDPVVTKCKHYFCEHC 285
EE V Q + E L C IC + F++ V C H FC+HC
Sbjct: 376 EEVVTQMTEVLESEL--QCSICSELFIEAVTLNCAHSFCQHC 415
>sp|Q8C0E3|TRI47_MOUSE Tripartite motif-containing protein 47 OS=Mus musculus GN=Trim47
PE=2 SV=2
Length = 641
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 259 PFACFICRKPFVDPVVTKCKHYFCEHC 285
PF+C IC +P +PV C H FC C
Sbjct: 6 PFSCPICLEPLREPVTLPCGHNFCLAC 32
>sp|Q3TL54|TR43A_MOUSE Tripartite motif-containing protein 43A OS=Mus musculus GN=Trim43a
PE=2 SV=1
Length = 445
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 252 DDDEDSLPFACFICRKPFVDPVVTKCKHYFCEHCAL 287
D E++L C IC+ F++PV +C H FCE C L
Sbjct: 8 DPQEETL--TCSICQSIFMNPVYLRCGHKFCEACLL 41
>sp|Q96LD4|TRI47_HUMAN Tripartite motif-containing protein 47 OS=Homo sapiens GN=TRIM47
PE=1 SV=2
Length = 638
Score = 37.0 bits (84), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 259 PFACFICRKPFVDPVVTKCKHYFCEHC 285
PF+C IC +P +PV C H FC C
Sbjct: 6 PFSCPICLEPLREPVTLPCGHNFCLAC 32
>sp|P15919|RAG1_MOUSE V(D)J recombination-activating protein 1 OS=Mus musculus GN=Rag1
PE=1 SV=2
Length = 1040
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 260 FACFICRKPFVDPVVTKCKHYFCEHCALK 288
+C IC DPV T CKH FC C L+
Sbjct: 288 ISCQICEHILADPVETSCKHLFCRICILR 316
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.131 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,781,617
Number of Sequences: 539616
Number of extensions: 4968413
Number of successful extensions: 17531
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 185
Number of HSP's that attempted gapping in prelim test: 16949
Number of HSP's gapped (non-prelim): 701
length of query: 289
length of database: 191,569,459
effective HSP length: 116
effective length of query: 173
effective length of database: 128,974,003
effective search space: 22312502519
effective search space used: 22312502519
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)