BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023003
(289 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225456573|ref|XP_002265768.1| PREDICTED: rhomboid protein 1, mitochondrial [Vitis vinifera]
Length = 333
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 174/339 (51%), Positives = 207/339 (61%), Gaps = 59/339 (17%)
Query: 1 MQRLLSLKQLASKSNFLKNPTNFTFSKP---FTCHPNVQKRPLSSFS-KHPFH------- 49
MQRL+SLK + S + F+KP HPN LS S H H
Sbjct: 1 MQRLISLKVASDISRRV-------FTKPSSLLHSHPNKTFFSLSQPSPTHHLHTTSLIPP 53
Query: 50 PTFSWRSQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSFFDGKVLFFRAQFPERSFA- 108
P F W S LS + F+ NP L ++F + L K+ +V F RAQFP RSF
Sbjct: 54 PHFPWPSHHGLSRSVYGFISNPTLLKQFLPTALLKGSSKTLAASRVGFLRAQFPRRSFGF 113
Query: 109 -----SFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSG 163
S+ RWRSWL +++VV GLIIAN AVFMLWRI+D +FM NNFTISLDNF SG
Sbjct: 114 SPSFDSYGRRWRSWLSGLSTNDVVLGLIIANVAVFMLWRISDHRFMLNNFTISLDNFKSG 173
Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
R+HTLITSAFSHID+ H++SNMIGLYFFGM+IGR GPE+LLKLY+AGA+ GSVFYLV+H
Sbjct: 174 RIHTLITSAFSHIDIGHLISNMIGLYFFGMNIGRVFGPEFLLKLYLAGAVVGSVFYLVHH 233
Query: 224 AFLAMSSKRQGMWVVDPSRTPA-----------------------------------LGV 248
AF+A SSK Q MW ++PS P LG+
Sbjct: 234 AFMAPSSKGQQMWSINPSAIPGLGASGAVNAIMLLDIFLFPRSTLYLEFFIPVPAILLGI 293
Query: 249 FLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 287
FLIGKDMLRIIEG+ ISGSAHLGGAAVAA+AW R+RRR
Sbjct: 294 FLIGKDMLRIIEGDDQISGSAHLGGAAVAAIAWTRLRRR 332
>gi|297734076|emb|CBI15323.3| unnamed protein product [Vitis vinifera]
Length = 362
Score = 296 bits (758), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 172/337 (51%), Positives = 205/337 (60%), Gaps = 59/337 (17%)
Query: 3 RLLSLKQLASKSNFLKNPTNFTFSKP---FTCHPNVQKRPLSSFS-KHPFH-------PT 51
RL+SLK + S + F+KP HPN LS S H H P
Sbjct: 32 RLISLKVASDISRRV-------FTKPSSLLHSHPNKTFFSLSQPSPTHHLHTTSLIPPPH 84
Query: 52 FSWRSQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSFFDGKVLFFRAQFPERSFA--- 108
F W S LS + F+ NP L ++F + L K+ +V F RAQFP RSF
Sbjct: 85 FPWPSHHGLSRSVYGFISNPTLLKQFLPTALLKGSSKTLAASRVGFLRAQFPRRSFGFSP 144
Query: 109 ---SFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRL 165
S+ RWRSWL +++VV GLIIAN AVFMLWRI+D +FM NNFTISLDNF SGR+
Sbjct: 145 SFDSYGRRWRSWLSGLSTNDVVLGLIIANVAVFMLWRISDHRFMLNNFTISLDNFKSGRI 204
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
HTLITSAFSHID+ H++SNMIGLYFFGM+IGR GPE+LLKLY+AGA+ GSVFYLV+HAF
Sbjct: 205 HTLITSAFSHIDIGHLISNMIGLYFFGMNIGRVFGPEFLLKLYLAGAVVGSVFYLVHHAF 264
Query: 226 LAMSSKRQGMWVVDPSRTPA-----------------------------------LGVFL 250
+A SSK Q MW ++PS P LG+FL
Sbjct: 265 MAPSSKGQQMWSINPSAIPGLGASGAVNAIMLLDIFLFPRSTLYLEFFIPVPAILLGIFL 324
Query: 251 IGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 287
IGKDMLRIIEG+ ISGSAHLGGAAVAA+AW R+RRR
Sbjct: 325 IGKDMLRIIEGDDQISGSAHLGGAAVAAIAWTRLRRR 361
>gi|224092178|ref|XP_002309495.1| predicted protein [Populus trichocarpa]
gi|222855471|gb|EEE93018.1| predicted protein [Populus trichocarpa]
Length = 242
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 137/236 (58%), Positives = 157/236 (66%), Gaps = 41/236 (17%)
Query: 92 DGKVLFFRAQFPER------SFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIAD 145
D KV FF A+F S S R WRSW + + VV GLIIAN AVFMLWRI D
Sbjct: 4 DCKVGFFIARFARGYSWSNLSLGSNRRGWRSWFNRLSADNVVLGLIIANAAVFMLWRIED 63
Query: 146 PKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLL 205
KFM NF ISLDNF SGR+HTL+TSAFSHID+ HI NMIGLYFFG +I RT GPE+LL
Sbjct: 64 QKFMMENFMISLDNFRSGRIHTLVTSAFSHIDIGHIAFNMIGLYFFGTNIARTFGPEFLL 123
Query: 206 KLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPA-------------------- 245
KLY+AGAIGGSVFYL++H ++ +SSK QGMW D SRTP
Sbjct: 124 KLYLAGAIGGSVFYLLHHGYMDLSSKGQGMWARDSSRTPGLGASGAVNAIMLLDIFLNPR 183
Query: 246 ---------------LGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRR 286
LG+FLIGKD+LR++EGNSNISGSAHLGGAAVAA+AWARI+R
Sbjct: 184 ATLYFDFIIPVPAILLGIFLIGKDLLRVMEGNSNISGSAHLGGAAVAAIAWARIKR 239
>gi|18394631|ref|NP_564058.1| RHOMBOID-like protein 12 [Arabidopsis thaliana]
gi|9795596|gb|AAF98414.1|AC026238_6 Hypothetical protein [Arabidopsis thaliana]
gi|13877607|gb|AAK43881.1|AF370504_1 Unknown protein [Arabidopsis thaliana]
gi|20148713|gb|AAM10247.1| unknown protein [Arabidopsis thaliana]
gi|21592397|gb|AAM64348.1| unknown [Arabidopsis thaliana]
gi|332191612|gb|AEE29733.1| RHOMBOID-like protein 12 [Arabidopsis thaliana]
Length = 336
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 143/283 (50%), Positives = 180/283 (63%), Gaps = 59/283 (20%)
Query: 48 FHPTFSWRSQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRK--SFFDGKVLFFRAQFPER 105
F P+ WRS++ R FF S L ++ K + + +V F +QFP++
Sbjct: 64 FDPSQLWRSEK---------------IRGFFASALGNKAVKLGNLVESRVGFIGSQFPKK 108
Query: 106 SF-----ASFRYR-WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDN 159
F + F+ R W+ WL+ +VV GL+IAN VF++WR+ + +FM NNF ISLDN
Sbjct: 109 GFEFQRFSGFQRRGWKHWLQGLSDRDVVLGLVIANAGVFVMWRVFNQQFMMNNFMISLDN 168
Query: 160 FLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFY 219
F SGRLHTLITSAFSHID+ HIVSNMIGLYFFG SI R GP++LLKLY+AGA+GGSVFY
Sbjct: 169 FKSGRLHTLITSAFSHIDIGHIVSNMIGLYFFGTSIARNFGPQFLLKLYLAGALGGSVFY 228
Query: 220 LVYHAFLAMSS-KRQGMWVVDPSRTPA--------------------------------- 245
L++HA++A +S K QG +V DPSRTP
Sbjct: 229 LIHHAYMAATSPKGQGAFVRDPSRTPGLGASGAVNAIMLLDIFLHPRATLYLEFFIPVPA 288
Query: 246 --LGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRR 286
LG+FLIGKD+LRI EGNSNISGSAHLGGAAVAA+AWARIR+
Sbjct: 289 MLLGIFLIGKDILRITEGNSNISGSAHLGGAAVAAIAWARIRK 331
>gi|297844814|ref|XP_002890288.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]
gi|297336130|gb|EFH66547.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]
Length = 336
Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 141/283 (49%), Positives = 177/283 (62%), Gaps = 59/283 (20%)
Query: 48 FHPTFSWRSQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRK--SFFDGKVLFFRAQFPER 105
F P+ WRS+ R FF + L ++ K + + +V F +QFP++
Sbjct: 64 FDPSQLWRSET---------------IRGFFATALGNKAVKLGNLVESRVGFIGSQFPKK 108
Query: 106 SFASFRYR------WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDN 159
F R+ W+ WL+ +VV GL+IANT VFM+WR+ + +FM NF ISLDN
Sbjct: 109 GFEFERFSGFQRRGWKHWLQGLSDRDVVLGLVIANTGVFMMWRVFNQQFMMKNFMISLDN 168
Query: 160 FLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFY 219
F SGRLHTLITSAFSHID+ HIVSNMIGLYFFG SI R GP++LLKLY+AGA+GGSVFY
Sbjct: 169 FTSGRLHTLITSAFSHIDIGHIVSNMIGLYFFGTSIARNFGPQFLLKLYLAGALGGSVFY 228
Query: 220 LVYHAFLAMSS-KRQGMWVVDPSRTPA--------------------------------- 245
L++HA++A +S K QG ++ DPSRTP
Sbjct: 229 LIHHAYMATTSPKGQGAFMRDPSRTPGLGASGAVNAIMLLDIFLHPTATLYLEFIIPVPA 288
Query: 246 --LGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRR 286
LG+FLIGKD+LRI EGNSNISGSAHLGGAAVAA+AWARIR+
Sbjct: 289 MLLGIFLIGKDILRITEGNSNISGSAHLGGAAVAAIAWARIRK 331
>gi|356513475|ref|XP_003525439.1| PREDICTED: uncharacterized protein C13E7.11-like [Glycine max]
Length = 336
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 137/269 (50%), Positives = 162/269 (60%), Gaps = 41/269 (15%)
Query: 41 SSFSKHPFHPTFSWRSQQSLSLKTHAFLFNPLLARRF-FTSLLSSQLRKSFFDGKV---L 96
S F HP H + S +S S K AFL P+++R F F LL R +
Sbjct: 53 SPFLTHPLH---HFHSCRSFSTKFRAFLSQPMISRHFAFNPLLRVSARSLQIGCRPSLHY 109
Query: 97 FFRAQFPERSFASFRYR-WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTI 155
F R F F R WRSWLR ++++V GLIIAN A+F+LWRIAD FM NFTI
Sbjct: 110 FIRHNFNFSHNHDFSRRSWRSWLRGLTANDMVLGLIIANVAIFLLWRIADQNFMIKNFTI 169
Query: 156 SLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGG 215
SLDNF SGRLHTLIT+AFSH+D HIVSNMIGLYFFGM+IGR GPE+LLKLY+AGA+GG
Sbjct: 170 SLDNFKSGRLHTLITNAFSHVDTWHIVSNMIGLYFFGMNIGRNFGPEFLLKLYLAGAVGG 229
Query: 216 SVFYLVYHAFLAMSSKRQGMWVVD----------------------PSRT---------P 244
SVFYL++ A+ A +SK +V P T P
Sbjct: 230 SVFYLIHQAYKAQTSKDWRTMIVSKELALGASGAVNAVMLLDIFLFPKATLYLDFFIPVP 289
Query: 245 A--LGVFLIGKDMLRIIEGNSNISGSAHL 271
A LG+FLIGKDMLRI+EGNS ISGSAHL
Sbjct: 290 AVLLGIFLIGKDMLRILEGNSQISGSAHL 318
>gi|449439341|ref|XP_004137444.1| PREDICTED: uncharacterized protein C13E7.11-like [Cucumis sativus]
Length = 336
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 152/336 (45%), Positives = 190/336 (56%), Gaps = 47/336 (13%)
Query: 1 MQRLLSLKQLASKSNFLKNPTNFTFSKPFT--CHPNVQKRPLSSFSKHPFHPTFSWRSQQ 58
M +L S K ++ SN N + F+ + Q SF P S
Sbjct: 1 MNKLFSRKLVSRLSNSYANSLDCKDCASFSTLVRTHNQNHLFGSFVTRPIQDHSRSWSSH 60
Query: 59 S-LSLKTHAFLFNPLLARRFFTSLLSSQLR---KSFFDGKVLFFRAQFPERSFA---SFR 111
+ K H F P++ +RF + ++ + KS + + LF F + F F
Sbjct: 61 RSFAQKIHGFFSVPVVGKRFIVNPSNTYFKGSMKSVVESRSLFTGTPFSKLKFQLKPGFV 120
Query: 112 YRW---RSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTL 168
++W RSW ++ +EVV GLIIAN AVF+LWRIADP FM+ NFTISL+N SGR+HTL
Sbjct: 121 HQWGGRRSWFQRLTPNEVVLGLIIANVAVFLLWRIADPIFMSKNFTISLENVRSGRIHTL 180
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAM 228
ITSAFSHID HIVSNM+GLYFFGM+IG G E+LLKLY+AGAIGGS FYL +H F A+
Sbjct: 181 ITSAFSHIDTGHIVSNMVGLYFFGMNIGNVFGSEFLLKLYLAGAIGGSAFYLAHHLFQAL 240
Query: 229 SSKRQGMWVVDPSR---------------------------------TPA--LGVFLIGK 253
SSK + W DP R PA LG+FLIGK
Sbjct: 241 SSKSRSFWGEDPVRAKGLGASGAVNAIMLLDIFLFPKATLYLQFFIPVPAILLGIFLIGK 300
Query: 254 DMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRGF 289
DMLR++E +S ISGSAHLGGAAVAALAWAR+RR F
Sbjct: 301 DMLRMLENDSQISGSAHLGGAAVAALAWARVRRGRF 336
>gi|147790859|emb|CAN61730.1| hypothetical protein VITISV_019858 [Vitis vinifera]
Length = 293
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 138/333 (41%), Positives = 170/333 (51%), Gaps = 87/333 (26%)
Query: 1 MQRLLSLKQLASKSN-FLKNPTNFTFSKPFTCHPNV-QKRP---LSSFSKHPFHPTFSWR 55
MQRL+SLK + S P++ S P+ ++ Q P L + S P P F W
Sbjct: 1 MQRLISLKVASDISRRVFTKPSSLLHSHPYKTFFSLSQPSPTHHLHTTSLIP-PPHFPWP 59
Query: 56 SQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSFFDGKVLFFRAQFPERSFA------S 109
S LS + F+ NP L ++F + L K+ +V F RAQFP RSF S
Sbjct: 60 SHHGLSRSVYGFISNPTLLKQFLPTALLKGSSKTLAASRVGFLRAQFPRRSFGFSPSFDS 119
Query: 110 FRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLI 169
+ RWRSWL +++VV GLIIAN AVFMLWRI+D +FM NNFTI
Sbjct: 120 YGRRWRSWLSGLSTNDVVLGLIIANVAVFMLWRISDHRFMLNNFTI-------------- 165
Query: 170 TSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMS 229
GR GPE+LLKLY+AGA+ GSVFYLV+HAF+A S
Sbjct: 166 --------------------------GRVFGPEFLLKLYLAGAVVGSVFYLVHHAFMAPS 199
Query: 230 SKRQGMWVVDPSRTPALG-----------------------------------VFLIGKD 254
SK Q MW ++PS P LG +FLIGKD
Sbjct: 200 SKGQQMWSINPSAIPGLGASGAVNAIMLLDIFLFPRSTLYLEFFIPVPAILLGIFLIGKD 259
Query: 255 MLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 287
MLRIIEG+ ISGSAHLGGAAVAA+AW R+RRR
Sbjct: 260 MLRIIEGDDQISGSAHLGGAAVAAIAWTRLRRR 292
>gi|255547155|ref|XP_002514635.1| conserved hypothetical protein [Ricinus communis]
gi|223546239|gb|EEF47741.1| conserved hypothetical protein [Ricinus communis]
Length = 195
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 107/186 (57%), Positives = 126/186 (67%), Gaps = 40/186 (21%)
Query: 143 IADPKFMANNFT----ISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRT 198
+ DP T ISLDNF SGR+HTLITSAFSHI++EHI+SNMIGLYFFG I R+
Sbjct: 11 VVDPSLYEQGGTLFGLISLDNFKSGRVHTLITSAFSHINLEHIISNMIGLYFFGTKIARS 70
Query: 199 LGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPA------------- 245
G EYLLKLY+AGAIGGS+FYLV+HAF+A+S+K MW +DPSRTP
Sbjct: 71 FGHEYLLKLYVAGAIGGSLFYLVHHAFMALSTKEHRMW-MDPSRTPGLGASGAVNAVMLL 129
Query: 246 ----------------------LGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWAR 283
LG+FLIGKD+LRIIEGNSNISGSAHLGGAAVAA+A+AR
Sbjct: 130 DIFLDPRATLYLNYIIPVPAILLGIFLIGKDVLRIIEGNSNISGSAHLGGAAVAAIAFAR 189
Query: 284 IRRRGF 289
I++ F
Sbjct: 190 IKKGRF 195
>gi|297839291|ref|XP_002887527.1| hypothetical protein ARALYDRAFT_316359 [Arabidopsis lyrata subsp.
lyrata]
gi|297333368|gb|EFH63786.1| hypothetical protein ARALYDRAFT_316359 [Arabidopsis lyrata subsp.
lyrata]
Length = 323
Score = 173 bits (438), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 152/259 (58%), Gaps = 52/259 (20%)
Query: 77 FFTSLLSSQLRKSF---FDGKVLFFRAQFPE------RSFASFRYR-WRSWLRQYGSSEV 126
F T+L ++ L+ F + +V FF +Q P + F F+ R W+SW+ G++ V
Sbjct: 65 FATTLGNTNLKLKFRNVLESRVGFFSSQLPSNGLIESKGFTGFQKRGWKSWIN--GANGV 122
Query: 127 VYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMI 186
V+GLIIAN AVF +WR+++ +M +F ++ +F SGR+HTLITS FS++ I+ NMI
Sbjct: 123 VFGLIIANVAVFTMWRVSNRWWMLKHFVLTTKSFTSGRIHTLITSGFSNVGTNQIILNMI 182
Query: 187 GLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTP-- 244
GLY+FG I RTLGP YLLKLY AGA+G SVF+L HA LA + K QG+ +D S+ P
Sbjct: 183 GLYYFGTRIARTLGPLYLLKLYFAGALGSSVFFLSNHALLA-TLKGQGVVTIDKSKLPYS 241
Query: 245 -----------AL-----------------------GVFLIGKDMLRIIEG-NSNISGSA 269
AL G+ +G +ML+I+EG N+NIS S+
Sbjct: 242 QLGADGSVFAIALLDMFLYPKVTTYFVLMLRVPVMGGILFLGLEMLKILEGKNNNISRSS 301
Query: 270 H--LGGAAVAALAWARIRR 286
+GG VAA+AWARIR+
Sbjct: 302 VRLMGGVVVAAMAWARIRK 320
>gi|294462624|gb|ADE76858.1| unknown [Picea sitchensis]
Length = 314
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/197 (47%), Positives = 121/197 (61%), Gaps = 36/197 (18%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM 185
VV+ LI N AVF LWR AD +FM NNF IS+DNFLSGR+HTL+T AFSHI +H++SNM
Sbjct: 115 VVWSLIGVNIAVFFLWRHADRRFMENNFKISVDNFLSGRVHTLLTCAFSHIMSDHLLSNM 174
Query: 186 IGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPA 245
IGLYFFG ++G LG EYLLKLY+AGA+GGS+ +L+ AF+ + +P TP
Sbjct: 175 IGLYFFGSAVGSFLGAEYLLKLYLAGALGGSIMFLINQAFIVPWLEGSSRKYYNPRYTPG 234
Query: 246 ------------------------------------LGVFLIGKDMLRIIEGNSNISGSA 269
LG +IG+D+ + +G++ ISG+A
Sbjct: 235 ALGASGAVNAIILLDIFLFPKAIHYLNFFIPVPAMLLGAIIIGRDLWMVKQGDTQISGAA 294
Query: 270 HLGGAAVAALAWARIRR 286
HLGGA VAALAWA+I+R
Sbjct: 295 HLGGALVAALAWAKIKR 311
>gi|226510359|ref|NP_001144703.1| uncharacterized protein LOC100277739 [Zea mays]
gi|195646010|gb|ACG42473.1| hypothetical protein [Zea mays]
Length = 328
Score = 163 bits (413), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 94/206 (45%), Positives = 120/206 (58%), Gaps = 36/206 (17%)
Query: 114 WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAF 173
W SW+ + V+ LI AN AVF+LWR+ADP FM +F ISLDNF SGRLHTL+TSAF
Sbjct: 123 WASWMES--ADGAVWMLIGANVAVFLLWRVADPGFMRKHFMISLDNFKSGRLHTLLTSAF 180
Query: 174 SHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQ 233
SH + H+ +NM GL+FFG SI GP +LLKLY+ GA+ GSVF+L+ AFLA +
Sbjct: 181 SHAEFNHLFANMFGLFFFGSSITNVFGPAFLLKLYVGGALTGSVFFLLEKAFLAYRKQDY 240
Query: 234 GMW---------------------------------VVDPSRTPALGVFLIGKDMLRIIE 260
W V P +G LIG D++R ++
Sbjct: 241 VGWDTSRAAELGASAAVNATMLLQIFLYPKGLVYIYFVIPVPAALMGAGLIGADLVR-LK 299
Query: 261 GNSNISGSAHLGGAAVAALAWARIRR 286
G+ ++SGSA LGGA VAAL WARIR+
Sbjct: 300 GHGDVSGSAPLGGALVAALVWARIRK 325
>gi|242054489|ref|XP_002456390.1| hypothetical protein SORBIDRAFT_03g035340 [Sorghum bicolor]
gi|241928365|gb|EES01510.1| hypothetical protein SORBIDRAFT_03g035340 [Sorghum bicolor]
Length = 328
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/208 (47%), Positives = 122/208 (58%), Gaps = 40/208 (19%)
Query: 114 WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAF 173
W W+ S+ V+ LI AN AVFMLWR+ADP FM +F ISLDN SGRLHTL+T+AF
Sbjct: 123 WAYWMESPDSA--VWMLIGANVAVFMLWRVADPGFMRRHFMISLDNLKSGRLHTLLTNAF 180
Query: 174 SHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQ 233
SH + H+ +NMIGLYFFG +I GP +LLKLY+ GA+ GSVF+L+ AFLA +
Sbjct: 181 SHAESNHLFANMIGLYFFGNNIANVFGPAFLLKLYVGGALTGSVFFLLEKAFLAHRKQDY 240
Query: 234 GMWVVDPSRTPALG------------VFL-----------------------IGKDMLRI 258
W D SR LG +FL IG D+LR
Sbjct: 241 EGW--DTSRVAGLGASAAVNATILLQIFLYPKGLVYLYFLIPVPAALMGAAIIGADLLR- 297
Query: 259 IEGNSNISGSAHLGGAAVAALAWARIRR 286
++ + +SGSAHLGGA VAAL WARIR+
Sbjct: 298 LKRHGEVSGSAHLGGALVAALMWARIRK 325
>gi|42563215|ref|NP_177553.3| Rhomboid-related intramembrane serine protease-like protein
[Arabidopsis thaliana]
gi|28392927|gb|AAO41899.1| unknown protein [Arabidopsis thaliana]
gi|332197433|gb|AEE35554.1| Rhomboid-related intramembrane serine protease-like protein
[Arabidopsis thaliana]
Length = 322
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 90/236 (38%), Positives = 131/236 (55%), Gaps = 48/236 (20%)
Query: 97 FFRAQFPERSFAS-----FRYR-WRSWLRQYGSSEVVYGLIIANTAVFMLWRI--ADPKF 148
FF ++ P F S F+ R W+SW+ G++ VV+GL+IAN AVF +WR+ D +
Sbjct: 84 FFSSELPSHGFESGGFTGFQKRGWKSWIN--GANGVVFGLVIANAAVFTMWRVLGKDNMW 141
Query: 149 MANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLY 208
M NF +S +F++GR+HTLITS FSH+ HI+ NM+GL +FG I R+ GP YLLKLY
Sbjct: 142 MVKNFMLSRYSFMTGRIHTLITSGFSHVGATHIILNMMGLCYFGARIARSFGPRYLLKLY 201
Query: 209 MAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPA----------------------- 245
AGA+GGSVF+L HA +S K Q + D + P
Sbjct: 202 FAGALGGSVFFLSSHALSVISLKGQRVVPKDQLKVPIGKLGANGPVYAITLLDMLLYPKV 261
Query: 246 -------------LGVFLIGKDMLRIIEG--NSNISGSAHLGGAAVAALAWARIRR 286
G++ +G ++++++EG N+ ++ LGG VA +AWARIR+
Sbjct: 262 TTYFGLMLRVPVFAGIYSLGLNIIKMLEGKNNNTLTSLDQLGGVVVAVIAWARIRK 317
>gi|79379813|ref|NP_177554.2| Rhomboid-related intramembrane serine protease family protein
[Arabidopsis thaliana]
gi|332197434|gb|AEE35555.1| Rhomboid-related intramembrane serine protease family protein
[Arabidopsis thaliana]
Length = 317
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 105/280 (37%), Positives = 144/280 (51%), Gaps = 63/280 (22%)
Query: 56 SQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSF---FDGKVLFFRAQFPERSFAS--- 109
S S S K H F F + L ++ L+ F + + FF ++ P F S
Sbjct: 55 SAVSRSAKVHGF---------FASKLGNTNLKLKFGNVMESRAGFFSSELPSHGFESGGF 105
Query: 110 --FRYR-WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH 166
F+ R W+SW+ G++ VV+GL+IAN AVF +WR++D +M + ++ F SG +H
Sbjct: 106 TGFQKRGWKSWIN--GANGVVFGLVIANAAVFTMWRVSDRSWMLSTYS-----FTSGYIH 158
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
TLITS FSHI I+ NMIG+ +FG I RTLGP YLLKLY AGA+GGSV +L YHA L
Sbjct: 159 TLITSGFSHIGTSQIILNMIGISYFGSRIARTLGPLYLLKLYFAGALGGSVCFLSYHALL 218
Query: 227 AMSSKRQGMWVVDPSRTPALGVFL-----------------------------------I 251
A + K +G+ + D T + L +
Sbjct: 219 A-TLKGEGVVIKDHQSTAPISQLLGADGSMFAIALLDMFIYPKVTTYFALMLRVHRIINL 277
Query: 252 GKDMLRIIEGNSN--ISGSAHLGGAAVAALAWARIRRRGF 289
G ++L I EG N S S LGG VAA+AWARI++ F
Sbjct: 278 GVEILNIPEGGPNHIASSSGQLGGVVVAAMAWARIKKGRF 317
>gi|52354227|gb|AAU44434.1| hypothetical protein AT1G74140 [Arabidopsis thaliana]
Length = 317
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 105/280 (37%), Positives = 144/280 (51%), Gaps = 63/280 (22%)
Query: 56 SQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSF---FDGKVLFFRAQFPERSFAS--- 109
S S S K H F F + L ++ L+ F + + FF ++ P F S
Sbjct: 55 SAVSRSAKVHGF---------FASKLGNTNLKLKFGNVMESRAGFFSSELPSHGFESGGF 105
Query: 110 --FRYR-WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH 166
F+ R W+SW+ G++ VV+GL+IAN AVF +WR++D +M + ++ F SG +H
Sbjct: 106 TGFQKRGWKSWIN--GANGVVFGLVIANAAVFTMWRVSDRSWMLSTYS-----FTSGYIH 158
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
TLITS FSHI I+ NMIG+ +FG I RTLGP YLLKLY AGA+GGSV +L YHA L
Sbjct: 159 TLITSGFSHIGTSQIILNMIGISYFGSRIARTLGPLYLLKLYFAGALGGSVCFLSYHALL 218
Query: 227 AMSSKRQGMWVVDPSRTPALGVFL-----------------------------------I 251
A + K +G+ + D T + L +
Sbjct: 219 A-TLKGEGVVIKDHQSTAPISQLLGADGSMFAIALLDMFIYPKVTTYFALMLRVHRIINL 277
Query: 252 GKDMLRIIEGNSN--ISGSAHLGGAAVAALAWARIRRRGF 289
G ++L I EG N S S LGG VAA+AWARI++ F
Sbjct: 278 GVEILNIPEGGPNHIASSSGQLGGVVVAAMAWARIKKGRF 317
>gi|186495287|ref|NP_001117599.1| Rhomboid-related intramembrane serine protease family protein
[Arabidopsis thaliana]
gi|332197438|gb|AEE35559.1| Rhomboid-related intramembrane serine protease family protein
[Arabidopsis thaliana]
Length = 320
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 105/283 (37%), Positives = 144/283 (50%), Gaps = 66/283 (23%)
Query: 56 SQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSF---FDGKVLFFRAQFPERSFAS--- 109
S S S K H F F + L ++ L+ F + + FF ++ P F S
Sbjct: 55 SAVSRSAKVHGF---------FASKLGNTNLKLKFGNVMESRAGFFSSELPSHGFESGGF 105
Query: 110 --FRYR-WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH 166
F+ R W+SW+ G++ VV+GL+IAN AVF +WR++D +M + ++ F SG +H
Sbjct: 106 TGFQKRGWKSWIN--GANGVVFGLVIANAAVFTMWRVSDRSWMLSTYS-----FTSGYIH 158
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
TLITS FSHI I+ NMIG+ +FG I RTLGP YLLKLY AGA+GGSV +L YHA L
Sbjct: 159 TLITSGFSHIGTSQIILNMIGISYFGSRIARTLGPLYLLKLYFAGALGGSVCFLSYHALL 218
Query: 227 AMSSKRQGMWVVDPSRTPALGVFL------------------------------------ 250
A + K +G+ + D T + L
Sbjct: 219 A-TLKGEGVVIKDHQSTAPISQLLGADGSMFAIALLDMFIYPKVTTYFALMLRVHVMFRI 277
Query: 251 --IGKDMLRIIEGNSN--ISGSAHLGGAAVAALAWARIRRRGF 289
+G ++L I EG N S S LGG VAA+AWARI++ F
Sbjct: 278 INLGVEILNIPEGGPNHIASSSGQLGGVVVAAMAWARIKKGRF 320
>gi|91806083|gb|ABE65770.1| hypothetical protein At1g74140 [Arabidopsis thaliana]
Length = 306
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 105/267 (39%), Positives = 145/267 (54%), Gaps = 54/267 (20%)
Query: 56 SQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSF---FDGKVLFFRAQFPERSFAS--- 109
S S S K H F F + L ++ L+ F + + FF ++ P F S
Sbjct: 55 SAVSRSAKVHGF---------FASKLGNTNLKLKFGNVMESRAGFFSSELPSHGFESGGF 105
Query: 110 --FRYR-WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH 166
F+ R W+SW+ G++ VV+GL+IAN AVF +WR++D +M + ++ F SG +H
Sbjct: 106 TGFQKRGWKSWIN--GANGVVFGLVIANAAVFTMWRVSDRSWMLSTYS-----FTSGYIH 158
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
TLITS FSHI I+ NMIG+ +FG I RTLGP YLLKLY AGA+GGSV +L YHA L
Sbjct: 159 TLITSGFSHIGTSQIILNMIGISYFGSRIARTLGPLYLLKLYFAGALGGSVCFLSYHALL 218
Query: 227 AMSSKRQGMWVVDPSRTPALGVFLIGKD-----------------------MLRI---IE 260
A + K +G+ + D T + L+G D MLR+
Sbjct: 219 A-TLKGEGVVIKDHQSTAPISQ-LLGADGSMFAIALLDMFIYPKVTTYFALMLRVHVMFG 276
Query: 261 GNSNI-SGSAHLGGAAVAALAWARIRR 286
G ++I S S LGG VAA+AWARI++
Sbjct: 277 GPNHIASSSGQLGGVVVAAMAWARIKK 303
>gi|145327237|ref|NP_001077820.1| Rhomboid-related intramembrane serine protease family protein
[Arabidopsis thaliana]
gi|332197437|gb|AEE35558.1| Rhomboid-related intramembrane serine protease family protein
[Arabidopsis thaliana]
Length = 306
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 105/267 (39%), Positives = 144/267 (53%), Gaps = 54/267 (20%)
Query: 56 SQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSF---FDGKVLFFRAQFPERSFAS--- 109
S S S K H F F + L ++ L+ F + + FF ++ P F S
Sbjct: 55 SAVSRSAKVHGF---------FASKLGNTNLKLKFGNVMESRAGFFSSELPSHGFESGGF 105
Query: 110 --FRYR-WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH 166
F+ R W+SW+ G++ VV+GL+IAN AVF +WR++D +M + ++ F SG +H
Sbjct: 106 TGFQKRGWKSWIN--GANGVVFGLVIANAAVFTMWRVSDRSWMLSTYS-----FTSGYIH 158
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
TLITS FSHI I+ NMIG+ +FG I RTLGP YLLKLY AGA+GGSV +L YHA L
Sbjct: 159 TLITSGFSHIGTSQIILNMIGISYFGSRIARTLGPLYLLKLYFAGALGGSVCFLSYHALL 218
Query: 227 AMSSKRQGMWVVDPSRTPALGVFLIGKD-----------------------MLR--IIEG 261
A + K +G+ + D T + L+G D MLR ++ G
Sbjct: 219 A-TLKGEGVVIKDHQSTAPISQ-LLGADGSMFAIALLDMFIYPKVTTYFALMLRVHVMFG 276
Query: 262 NSN--ISGSAHLGGAAVAALAWARIRR 286
N S S LGG VAA+AWARI++
Sbjct: 277 GPNHIASSSGQLGGVVVAAMAWARIKK 303
>gi|357136569|ref|XP_003569876.1| PREDICTED: rhomboid protein 1, mitochondrial-like [Brachypodium
distachyon]
Length = 325
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 116/208 (55%), Gaps = 39/208 (18%)
Query: 114 WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAF 173
W WL + ++ +I N AVF++W++ADP FM ++FT+SLDN SGRLHTL+TSAF
Sbjct: 119 WAHWLPS--ADGMLLTIISTNVAVFLIWQLADPSFMMDHFTVSLDNLKSGRLHTLLTSAF 176
Query: 174 SHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQ 233
SH H++ NMIGLYFFG SI GP +LLKLYMAGA+ GS F+L+ + S +Q
Sbjct: 177 SHRGNGHLLGNMIGLYFFGSSISSMFGPAFLLKLYMAGALVGSTFFLLEKTY--TSPPKQ 234
Query: 234 GMWVVDPSRTPALG------------VFL-----------------------IGKDMLRI 258
D SR ALG +FL IG D+LR+
Sbjct: 235 AYLEWDSSRNSALGASAAVNAIVLLKIFLNPKGLVYLYFLIPVPAALVGAAIIGFDLLRV 294
Query: 259 IEGNSNISGSAHLGGAAVAALAWARIRR 286
+ SGS+ LGG VAAL WARIR+
Sbjct: 295 SKEQGQASGSSPLGGTLVAALVWARIRK 322
>gi|326509755|dbj|BAJ87093.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 325
Score = 150 bits (378), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 93/211 (44%), Positives = 115/211 (54%), Gaps = 39/211 (18%)
Query: 111 RYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLIT 170
R W WL + +V L+ AN AV+MLW + DP FM +FT+SLDN SGRLHTL+T
Sbjct: 116 RVPWGRWLPS--ADGMVLMLMGANVAVYMLWHMVDPIFMKEHFTVSLDNVKSGRLHTLLT 173
Query: 171 SAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSS 230
SAFS H+ SNM+ LYFFG SI LGP +LLKLY+AGA+ GS FYLV AF+A
Sbjct: 174 SAFSQFVPGHLFSNMMCLYFFGSSISSMLGPAFLLKLYIAGALVGSTFYLVEKAFIAPRR 233
Query: 231 KRQGMWVVDPSRTPALG------------VFL-----------------------IGKDM 255
+ W D R+ +LG +FL IG D+
Sbjct: 234 QLYAGW--DMQRSNSLGASAAVNAIVLLHIFLKPKGRIYLYLLIPVPAAFVGAAWIGLDL 291
Query: 256 LRIIEGNSNISGSAHLGGAAVAALAWARIRR 286
R EG S ++HLGG VAAL WARIR+
Sbjct: 292 WRAKEGQGQTSAASHLGGTLVAALVWARIRK 322
>gi|218189102|gb|EEC71529.1| hypothetical protein OsI_03840 [Oryza sativa Indica Group]
Length = 327
Score = 143 bits (360), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 87/195 (44%), Positives = 105/195 (53%), Gaps = 39/195 (20%)
Query: 102 FPERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFL 161
FP S W WL + V L+ AN VFMLW +ADP FM +F ISLDNF
Sbjct: 106 FPSSSMFLSGVSWAKWLPS--ADGAVLMLVGANVGVFMLWHLADPSFMRRHFMISLDNFK 163
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
SGRLHTL+T+AFSH + H++SNMIGLYFFG SI GP +LLKLY+AGA+ GS F+L+
Sbjct: 164 SGRLHTLLTNAFSHAESGHLISNMIGLYFFGSSISNMFGPAFLLKLYVAGALAGSAFFLL 223
Query: 222 YHAFLAMSSKRQGMWVVDPSRTPA-----------------------------------L 246
AFLA + G W D SRTPA +
Sbjct: 224 EKAFLAPRRQFYGGW--DNSRTPALGASAAANAIILLDIFLYPKKLVYLYFFIPIPAAIM 281
Query: 247 GVFLIGKDMLRIIEG 261
G LIG D+LR+ EG
Sbjct: 282 GAILIGADLLRVKEG 296
>gi|413952349|gb|AFW84998.1| hypothetical protein ZEAMMB73_057083 [Zea mays]
Length = 328
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 92/206 (44%), Positives = 118/206 (57%), Gaps = 36/206 (17%)
Query: 114 WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAF 173
W SW+ + V+ LI AN AVF+LWR+ADP FM +F ISLDNF SGRLHTL+TSAF
Sbjct: 123 WASWMES--ADGAVWMLIGANVAVFLLWRVADPGFMRKHFMISLDNFKSGRLHTLLTSAF 180
Query: 174 SHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQ 233
SH + H+ +NM GL+FFG SI GP +LLKLY+ GA+ GSVF+L+ AFLA +
Sbjct: 181 SHAEFNHLFANMFGLFFFGSSITNVFGPAFLLKLYVGGALTGSVFFLLEKAFLAYRKQDY 240
Query: 234 GMW---------------------------------VVDPSRTPALGVFLIGKDMLRIIE 260
W V P +G LIG D++R ++
Sbjct: 241 VGWDTSRAAELGASAAVNATMLLQIFLYPKGLVYIYFVIPVPAALMGAGLIGADLVR-LK 299
Query: 261 GNSNISGSAHLGGAAVAALAWARIRR 286
+ ++SGSA LGGA AAL WARIR+
Sbjct: 300 RHGDVSGSAPLGGALAAALVWARIRK 325
>gi|115440105|ref|NP_001044332.1| Os01g0763100 [Oryza sativa Japonica Group]
gi|57900364|dbj|BAD87354.1| rhomboid family protein-like [Oryza sativa Japonica Group]
gi|113533863|dbj|BAF06246.1| Os01g0763100 [Oryza sativa Japonica Group]
Length = 308
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/192 (44%), Positives = 105/192 (54%), Gaps = 39/192 (20%)
Query: 109 SFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTL 168
S + R WL + V L+ AN VFMLW +ADP FM +F ISLDNF SGRLHTL
Sbjct: 97 SLQRRRTKWLPS--ADGAVLMLVGANVGVFMLWHLADPSFMRRHFMISLDNFKSGRLHTL 154
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAM 228
+T+AFSH + H++SNMIGLYFFG SI GP +LLKLY+AGA+ GS F+L+ AFLA
Sbjct: 155 LTNAFSHAESGHLISNMIGLYFFGSSISNMFGPAFLLKLYVAGALAGSAFFLLEKAFLAP 214
Query: 229 SSKRQGMWVVDPSRTPA-----------------------------------LGVFLIGK 253
+ G W D SRTPA +G LIG
Sbjct: 215 RRQFYGGW--DNSRTPALGASAAANAIILLDIFLYPKKLVYLYFFIPIPAAIMGAILIGA 272
Query: 254 DMLRIIEGNSNI 265
D+LR+ E NI
Sbjct: 273 DLLRVKETILNI 284
>gi|42572101|ref|NP_974141.1| Rhomboid-related intramembrane serine protease-like protein
[Arabidopsis thaliana]
gi|332197432|gb|AEE35553.1| Rhomboid-related intramembrane serine protease-like protein
[Arabidopsis thaliana]
Length = 296
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/156 (47%), Positives = 101/156 (64%), Gaps = 10/156 (6%)
Query: 97 FFRAQFPERSFAS-----FRYR-WRSWLRQYGSSEVVYGLIIANTAVFMLWRI--ADPKF 148
FF ++ P F S F+ R W+SW+ G++ VV+GL+IAN AVF +WR+ D +
Sbjct: 84 FFSSELPSHGFESGGFTGFQKRGWKSWIN--GANGVVFGLVIANAAVFTMWRVLGKDNMW 141
Query: 149 MANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLY 208
M NF +S +F++GR+HTLITS FSH+ HI+ NM+GL +FG I R+ GP YLLKLY
Sbjct: 142 MVKNFMLSRYSFMTGRIHTLITSGFSHVGATHIILNMMGLCYFGARIARSFGPRYLLKLY 201
Query: 209 MAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTP 244
AGA+GGSVF+L HA +S K Q + D + P
Sbjct: 202 FAGALGGSVFFLSSHALSVISLKGQRVVPKDQLKVP 237
>gi|12323818|gb|AAG51877.1|AC079678_7 hypothetical protein; 33567-31357 [Arabidopsis thaliana]
Length = 305
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 120/234 (51%), Gaps = 61/234 (26%)
Query: 97 FFRAQFPERSFAS-----FRYR-WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMA 150
FF ++ P F S F+ R W+SW+ G++ VV+GL+IAN AVF +WR+
Sbjct: 84 FFSSELPSHGFESGGFTGFQKRGWKSWIN--GANGVVFGLVIANAAVFTMWRVLGKD--- 138
Query: 151 NNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMA 210
N + +S +F++GR+HTLITS FSH+ HI+ NM+GL +FG +LY A
Sbjct: 139 NMWMLSRYSFMTGRIHTLITSGFSHVGATHIILNMMGLCYFGA------------RLYFA 186
Query: 211 GAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPA------------------------- 245
GA+GGSVF+L HA +S K Q + D + P
Sbjct: 187 GALGGSVFFLSSHALSVISLKGQRVVPKDQLKVPIGKLGANGPVYAITLLDMLLYPKVTT 246
Query: 246 -----------LGVFLIGKDMLRIIEG--NSNISGSAHLGGAAVAALAWARIRR 286
G++ +G ++++++EG N+ ++ LGG VA +AWARIR+
Sbjct: 247 YFGLMLRVPVFAGIYSLGLNIIKMLEGKNNNTLTSLDQLGGVVVAVIAWARIRK 300
>gi|52354229|gb|AAU44435.1| hypothetical protein AT1G74140 [Arabidopsis thaliana]
Length = 298
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 95/277 (34%), Positives = 128/277 (46%), Gaps = 82/277 (29%)
Query: 56 SQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSF---FDGKVLFFRAQFPERSFAS--- 109
S S S K H F F + L ++ L+ F + + FF ++ P F S
Sbjct: 55 SAVSRSAKVHGF---------FASKLGNTNLKLKFGNVMESRAGFFSSELPSHGFESGGF 105
Query: 110 --FRYR-WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH 166
F+ R W+SW+ G++ VV+GL+ S +F SG +H
Sbjct: 106 TGFQKRGWKSWIN--GANGVVFGLL------------------------STYSFTSGYIH 139
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
TLITS FSHI I+ NMIG+ +FG I RTLGP YLLKLY AGA+GGSV +L YHA L
Sbjct: 140 TLITSGFSHIGTSQIILNMIGISYFGSRIARTLGPLYLLKLYFAGALGGSVCFLSYHALL 199
Query: 227 AMSSKRQGMWVVDPSRTPALGVFL-----------------------------------I 251
A + K +G+ + D T + L +
Sbjct: 200 A-TLKGEGVVIKDHQSTAPISQLLGADGSMFAIALLDMFIYPKVTTYFALMLRVHRIINL 258
Query: 252 GKDMLRIIEGNSN--ISGSAHLGGAAVAALAWARIRR 286
G ++L I EG N S S LGG VAA+AWARI++
Sbjct: 259 GVEILNIPEGGPNHIASSSGQLGGVVVAAMAWARIKK 295
>gi|79321273|ref|NP_001031280.1| Rhomboid-related intramembrane serine protease family protein
[Arabidopsis thaliana]
gi|332197435|gb|AEE35556.1| Rhomboid-related intramembrane serine protease family protein
[Arabidopsis thaliana]
Length = 298
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 95/277 (34%), Positives = 128/277 (46%), Gaps = 82/277 (29%)
Query: 56 SQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSF---FDGKVLFFRAQFPERSFAS--- 109
S S S K H F F + L ++ L+ F + + FF ++ P F S
Sbjct: 55 SAVSRSAKVHGF---------FASKLGNTNLKLKFGNVMESRAGFFSSELPSHGFESGGF 105
Query: 110 --FRYR-WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH 166
F+ R W+SW+ G++ VV+GL+ S +F SG +H
Sbjct: 106 TGFQKRGWKSWIN--GANGVVFGLL------------------------STYSFTSGYIH 139
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
TLITS FSHI I+ NMIG+ +FG I RTLGP YLLKLY AGA+GGSV +L YHA L
Sbjct: 140 TLITSGFSHIGTSQIILNMIGISYFGSRIARTLGPLYLLKLYFAGALGGSVCFLSYHALL 199
Query: 227 AMSSKRQGMWVVDPSRTPALGVFL-----------------------------------I 251
A + K +G+ + D T + L +
Sbjct: 200 A-TLKGEGVVIKDHQSTAPISQLLGADGSMFAIALLDMFIYPKVTTYFALMLRVHRIINL 258
Query: 252 GKDMLRIIEGNSN--ISGSAHLGGAAVAALAWARIRR 286
G ++L I EG N S S LGG VAA+AWARI++
Sbjct: 259 GVEILNIPEGGPNHIASSSGQLGGVVVAAMAWARIKK 295
>gi|91806085|gb|ABE65771.1| hypothetical protein At1g74140 [Arabidopsis thaliana]
Length = 301
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 95/280 (33%), Positives = 128/280 (45%), Gaps = 85/280 (30%)
Query: 56 SQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSF---FDGKVLFFRAQFPERSFAS--- 109
S S S K H F F + L ++ L+ F + + FF ++ P F S
Sbjct: 55 SAVSRSAKVHGF---------FASKLGNTNLKLKFGNVMESRAGFFSSELPSHGFESGGF 105
Query: 110 --FRYR-WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH 166
F+ R W+SW+ G++ VV+GL+ S +F SG +H
Sbjct: 106 TGFQKRGWKSWIN--GANGVVFGLL------------------------STYSFTSGYIH 139
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
TLITS FSHI I+ NMIG+ +FG I RTLGP YLLKLY AGA+GGSV +L YHA L
Sbjct: 140 TLITSGFSHIGTSQIILNMIGISYFGSRIARTLGPLYLLKLYFAGALGGSVCFLSYHALL 199
Query: 227 AMSSKRQGMWVVDPSRTPALGVFL------------------------------------ 250
A + K +G+ + D T + L
Sbjct: 200 A-TLKGEGVVIKDHQSTAPISQLLGADGSMFAIALLDMFIYPKVTTYFALMLRVHVMFRI 258
Query: 251 --IGKDMLRIIEGNSN--ISGSAHLGGAAVAALAWARIRR 286
+G ++L I EG N S S LGG VAA+AWARI++
Sbjct: 259 INLGVEILNIPEGGPNHIASSSGQLGGVVVAAMAWARIKK 298
>gi|145327235|ref|NP_001077819.1| Rhomboid-related intramembrane serine protease family protein
[Arabidopsis thaliana]
gi|332197436|gb|AEE35557.1| Rhomboid-related intramembrane serine protease family protein
[Arabidopsis thaliana]
Length = 301
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 95/280 (33%), Positives = 128/280 (45%), Gaps = 85/280 (30%)
Query: 56 SQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSF---FDGKVLFFRAQFPERSFAS--- 109
S S S K H F F + L ++ L+ F + + FF ++ P F S
Sbjct: 55 SAVSRSAKVHGF---------FASKLGNTNLKLKFGNVMESRAGFFSSELPSHGFESGGF 105
Query: 110 --FRYR-WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH 166
F+ R W+SW+ G++ VV+GL+ S +F SG +H
Sbjct: 106 TGFQKRGWKSWIN--GANGVVFGLL------------------------STYSFTSGYIH 139
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
TLITS FSHI I+ NMIG+ +FG I RTLGP YLLKLY AGA+GGSV +L YHA L
Sbjct: 140 TLITSGFSHIGTSQIILNMIGISYFGSRIARTLGPLYLLKLYFAGALGGSVCFLSYHALL 199
Query: 227 AMSSKRQGMWVVDPSRTPALGVFL------------------------------------ 250
A + K +G+ + D T + L
Sbjct: 200 A-TLKGEGVVIKDHQSTAPISQLLGADGSMFAIALLDMFIYPKVTTYFALMLRVHVMFRI 258
Query: 251 --IGKDMLRIIEGNSN--ISGSAHLGGAAVAALAWARIRR 286
+G ++L I EG N S S LGG VAA+AWARI++
Sbjct: 259 INLGVEILNIPEGGPNHIASSSGQLGGVVVAAMAWARIKK 298
>gi|168002748|ref|XP_001754075.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694629|gb|EDQ80976.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 167
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 69/97 (71%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLY 189
L+ N AVF LW+ AD KFM NNF +S+++ LSGR+HT++TSAFS H++ NM+GLY
Sbjct: 1 LVGVNLAVFGLWQFADRKFMTNNFMVSVNSVLSGRIHTIVTSAFSQASFNHLIMNMLGLY 60
Query: 190 FFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
FFG + + G +LL LY+ G I GS+ +LVY AF+
Sbjct: 61 FFGTEVAQIFGGRWLLNLYLVGGIAGSIGHLVYCAFV 97
>gi|449486921|ref|XP_004157442.1| PREDICTED: uncharacterized protein LOC101226733 [Cucumis sativus]
Length = 140
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/137 (53%), Positives = 85/137 (62%), Gaps = 35/137 (25%)
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSR-- 242
M+GLYFFGM+IG G E+LLKLY+AGAIGGS FYL +H F A+SSK + W DP R
Sbjct: 1 MVGLYFFGMNIGNVFGSEFLLKLYLAGAIGGSAFYLAHHLFQALSSKSRSFWGEDPVRAK 60
Query: 243 -------------------------------TPA--LGVFLIGKDMLRIIEGNSNISGSA 269
PA LG+FLIGKDMLR++E +S ISGSA
Sbjct: 61 GLGASGAVNAIMLLDIFLFPKATLYLQFFIPVPAILLGIFLIGKDMLRMLENDSQISGSA 120
Query: 270 HLGGAAVAALAWARIRR 286
HLGGAAVAALAWAR+RR
Sbjct: 121 HLGGAAVAALAWARVRR 137
>gi|307105764|gb|EFN54012.1| hypothetical protein CHLNCDRAFT_136040 [Chlorella variabilis]
Length = 395
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 102/192 (53%), Gaps = 39/192 (20%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIV 182
S +V++GLI AN F LWR+A P M + T+S++ +GR+ T +T+AFSH DV H+
Sbjct: 60 SDKVLWGLIAANVGGFALWRLA-PNLMQTHATVSIEGLRAGRVWTALTAAFSHKDVYHLG 118
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF----------------- 225
+NM+GLYFFG +GR G + LL LYMAG + GS+ + ++ +
Sbjct: 119 ANMVGLYFFGRDVGRLFGGKRLLMLYMAGGVAGSLAHCGWYYYQACKTGEGRYGRARWFG 178
Query: 226 -----LAMSSKRQGMWVVD----PSRT---------PA--LGVFLIGKDMLRIIEGN-SN 264
L S+ + V D P+RT PA LGV + D+ ++G+ +
Sbjct: 179 FTPSALGASAAVNALTVCDILLYPTRTVLLYAIIPMPAALLGVLWLLNDVSGAMDGHRGH 238
Query: 265 ISGSAHLGGAAV 276
I+ + HLGGAA
Sbjct: 239 IAHAGHLGGAAT 250
>gi|255075983|ref|XP_002501666.1| predicted protein [Micromonas sp. RCC299]
gi|226516930|gb|ACO62924.1| predicted protein [Micromonas sp. RCC299]
Length = 303
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 99/195 (50%), Gaps = 28/195 (14%)
Query: 80 SLLSSQLRKSFFDGKVLFFRAQFPERS--FASFRYRWRS-----------WLRQYGSSEV 126
S+++ LR F DG L R P RS F +R +R L +
Sbjct: 30 SVVARDLR-CFKDGGSLL-RHGAPSRSRRFGYYRNDYRPPPPNNYRRAPPALPNMEGERM 87
Query: 127 VYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMI 186
++ ++ AN VF W DP+ M NF +S ++ +GR+HT++TSAFSH ++ H+ +NM+
Sbjct: 88 LWSIMGANAFVFACWHALDPRLMQQNFLVSEESVYAGRVHTIVTSAFSHYNLGHLGANML 147
Query: 187 GLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMS---------SKRQGMWV 237
LY+FG + R GP+YLL LY+AG + SV ++ + + S+R G W+
Sbjct: 148 ALYYFGRDLSRIFGPKYLLNLYLAGGVAASVTHVAWCRWERERRQSRRRGFISQRAGRWM 207
Query: 238 VDP----SRTPALGV 248
+ + PALG
Sbjct: 208 ENTAGYLTTPPALGA 222
>gi|12323817|gb|AAG51876.1|AC079678_6 hypothetical protein; 30326-27670 [Arabidopsis thaliana]
Length = 277
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 85/280 (30%), Positives = 117/280 (41%), Gaps = 103/280 (36%)
Query: 56 SQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSF---FDGKVLFFRAQFPERSFAS--- 109
S S S K H F F + L ++ L+ F + + FF ++ P F S
Sbjct: 55 SAVSRSAKVHGF---------FASKLGNTNLKLKFGNVMESRAGFFSSELPSHGFESGGF 105
Query: 110 --FRYR-WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH 166
F+ R W+SW+ G++ VV+GL+IAN AVF +WR++D +M
Sbjct: 106 TGFQKRGWKSWIN--GANGVVFGLVIANAAVFTMWRVSDRSWM----------------- 146
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
I RTLGP YLLKLY AGA+GGSV +L YHA L
Sbjct: 147 ----------------------------IARTLGPLYLLKLYFAGALGGSVCFLSYHALL 178
Query: 227 AMSSKRQGMWVVDPSRTPALGVFL-----------------------------------I 251
A + K +G+ + D T + L +
Sbjct: 179 A-TLKGEGVVIKDHQSTAPISQLLGADGSMFAIALLDMFIYPKVTTYFALMLRVHRIINL 237
Query: 252 GKDMLRIIEGNSN--ISGSAHLGGAAVAALAWARIRRRGF 289
G ++L I EG N S S LGG VAA+AWARI++ F
Sbjct: 238 GVEILNIPEGGPNHIASSSGQLGGVVVAAMAWARIKKGRF 277
>gi|303286161|ref|XP_003062370.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455887|gb|EEH53189.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 221
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 58/91 (63%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIV 182
++Y + +AN AVF W DP+FM NF +S ++ GR HTL+TSAFSH DV H+
Sbjct: 3 GEHMLYAIALANVAVFAAWHNLDPRFMRANFLVSEESIKRGRWHTLLTSAFSHRDVSHLA 62
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMAGAI 213
+NM+ LYFFG + R LGP LL LY+ +
Sbjct: 63 ANMLALYFFGRDVARALGPAALLNLYVVAGV 93
>gi|308801727|ref|XP_003078177.1| Integral membrane protease of the rhomboid family involved in
different forms of regulated intramembrane proteolysis
(ISS) [Ostreococcus tauri]
gi|116056628|emb|CAL52917.1| Integral membrane protease of the rhomboid family involved in
different forms of regulated intramembrane proteolysis
(ISS) [Ostreococcus tauri]
Length = 286
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 65/101 (64%), Gaps = 1/101 (0%)
Query: 123 SSEVVYGLIIANTAVFMLWRIA-DPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHI 181
++ ++GLI AN AV+ W ++ D +FM NF +S + GR HT++TSAFSH D+ H+
Sbjct: 56 ENQALWGLIAANGAVYYAWAVSEDTRFMRKNFMVSEEALARGRYHTMLTSAFSHFDLTHL 115
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
NMI LYFFG S+ G YLL LY G +G SV ++++
Sbjct: 116 GMNMIALYFFGKSVCERFGGRYLLTLYCVGGVGASVAHVLW 156
>gi|325179680|emb|CCA14078.1| serine protease family S54 putative [Albugo laibachii Nc14]
Length = 281
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 86/183 (46%), Gaps = 26/183 (14%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADPKF----MANNFTISLDNFLSGRLHTLITSAFSHIDV 178
S V++ LI++N V +W A + M +FT S ++ SGR +TL+T FSH V
Sbjct: 85 SDGVIHALILSNVMVTFMWASAITRQRKVRMLTHFTTSYEHLQSGRYYTLLTCVFSHAQV 144
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAI----------------------GGS 216
H+ +NM+GLYFFG + + LGP+ L LY++ + G+
Sbjct: 145 SHLFANMVGLYFFGRQVAQILGPKRFLYLYLSSGVVSSYAAVWEQRKSKKTILNLGASGA 204
Query: 217 VFYLVYHAFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEGNSNISGSAHLGGAAV 276
V + + L ++ + P GV IGKD + +++I AHLGGA
Sbjct: 205 VNAITALSVLTFPHSMVYIFGILPMPAWLFGVVFIGKDFYGWFQEDTHIGHFAHLGGAMC 264
Query: 277 AAL 279
A+
Sbjct: 265 GAV 267
>gi|145344872|ref|XP_001416948.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577174|gb|ABO95241.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 160
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
Query: 130 LIIANTAVFMLWRIA-DPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGL 188
LI N AV+ W D +FM NF +S + GR HT++TSAFSH D+ H+ NMI L
Sbjct: 1 LIGLNGAVYYAWATTEDGRFMRKNFMVSEEALAHGRWHTMLTSAFSHFDLTHLGMNMIAL 60
Query: 189 YFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMW 236
YFFG S+ G YLL LY G +G S ++ AF+ S ++G +
Sbjct: 61 YFFGRSVCERFGGRYLLTLYCVGGVGASAAHV---AFVEDSGAKRGYY 105
>gi|320169570|gb|EFW46469.1| hypothetical protein CAOG_04437 [Capsaspora owczarzaki ATCC 30864]
Length = 323
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 89/213 (41%), Gaps = 42/213 (19%)
Query: 115 RSWLRQYGS----SEVVYGLIIANTAVFMLWRIADP----------KFMANNFTISLDNF 160
R W R +G+ VV GL+ N VF L I D F+A NFT+ DN
Sbjct: 112 RGWFRNFGNRLQPKTVVIGLVGLNCTVFALQHIGDALRSQRDYRLSNFLALNFTLHWDNI 171
Query: 161 LSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL 220
R T+ T A +H D H++ NM+GLY FG+ + L P L +Y A G+ F L
Sbjct: 172 RRHRYWTMFTHALTHKDPMHLLMNMVGLYSFGLQVASYLSPARFLAVYFGAAGLGAAFEL 231
Query: 221 VY-------HAFLAMSSKRQGMW------------------VVDPSRTPALGVFLIGKDM 255
Y H+ + S G+ + P+ P LG+ + D+
Sbjct: 232 EYERRTQTRHSVIGASDAVLGLISLSVAMFPQSKASLFFLPIAIPTAIPLLGI--VAYDL 289
Query: 256 LRIIEGNSNISGSAHLGGAAVAALAWARIRRRG 288
R G + AHLGG A L + +R RG
Sbjct: 290 YRCATGVVYTASPAHLGGTAFGVLYYL-LRLRG 321
>gi|294879228|ref|XP_002768610.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239871281|gb|EER01328.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 277
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 69/126 (54%), Gaps = 5/126 (3%)
Query: 109 SFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTL 168
+RYR++ W+ + V +++ +++W A KFM NFT+S +N L GR HTL
Sbjct: 139 EWRYRYKRWIDEKTPYPVTTTMLLLAGVTYLVWGFAPSKFMNRNFTVSRENLLHGRFHTL 198
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAM 228
+T++ SH H++ N + ++ +G + R LG L+++ + A+ GS+ ++ L
Sbjct: 199 LTASLSHTSFTHLLVNSLVVFVYGSQLERLLGGPALIRIAITSAVAGSLGHI-----LTA 253
Query: 229 SSKRQG 234
S KR
Sbjct: 254 SDKRDA 259
>gi|392573164|gb|EIW66305.1| hypothetical protein TREMEDRAFT_72419 [Tremella mesenterica DSM
1558]
Length = 322
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 90/177 (50%), Gaps = 22/177 (12%)
Query: 72 LLARRFFTSLLSSQLRKSFFDGKVLFFRAQFPERSFASFRYRWRSWLRQYGSSEVVYGLI 131
L +R+ ++ S+++R+++F R P F R+ L Y S ++YG+I
Sbjct: 69 LPTQRYLSTSPSTRVRQTYFP------RTPRPPPGFIR---RFLRRLDSYPSIWIIYGII 119
Query: 132 IANTAVFMLWRIA--------DPK---FMANNFTISLDNFLSGRLHTLITSAFSHIDVEH 180
N VF+LW+ A DP +M NF +S N ++GR+ TLITS+FSH +H
Sbjct: 120 GLNVGVFLLWQYAWQSYTQFRDPSLYLWMNRNFVMSEANIMAGRIWTLITSSFSHSSGQH 179
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWV 237
I N +GLYF +G + LY++G + ++ L++H + + ++ WV
Sbjct: 180 IFINCLGLYFMAPLAASLIGSSAFIGLYLSGGVVAAITSLIWHRSVGVRDNKR--WV 234
>gi|405118782|gb|AFR93556.1| hypothetical protein CNAG_04056 [Cryptococcus neoformans var.
grubii H99]
Length = 335
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 61/112 (54%), Gaps = 11/112 (9%)
Query: 125 EVVYGLIIANTAVFMLWRIA--------DPK---FMANNFTISLDNFLSGRLHTLITSAF 173
+VYGLI N AVF+LW+ A DP F+ NNF ++ N SGR+ TL+TSAF
Sbjct: 125 TLVYGLIGINGAVFLLWQYALSSAQRFRDPSLLYFLRNNFILNEVNVFSGRIWTLVTSAF 184
Query: 174 SHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
SH + HI N +GLYF + +G L LY+ + S+ L YH F
Sbjct: 185 SHSNGTHIFVNCLGLYFLAPAAASIMGSASFLGLYLGAGVFSSLVSLGYHRF 236
>gi|321248479|ref|XP_003191142.1| hypothetical protein CGB_A0390C [Cryptococcus gattii WM276]
gi|317457609|gb|ADV19355.1| hypothetical protein CNB05400 [Cryptococcus gattii WM276]
Length = 307
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 61/112 (54%), Gaps = 11/112 (9%)
Query: 125 EVVYGLIIANTAVFMLWRIA--------DPK---FMANNFTISLDNFLSGRLHTLITSAF 173
+VYGLI N AVF+LW+ A DP F+ NNF ++ N SGR+ TL+TSAF
Sbjct: 125 TLVYGLIGINGAVFLLWQYALSSAQRFRDPSLLYFLRNNFILNEVNVFSGRIWTLVTSAF 184
Query: 174 SHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
SH + HI N +GLYF + +G L LY+ + S+ L YH F
Sbjct: 185 SHSNGTHIFVNCLGLYFLAPAAASIMGSASFLGLYLGAGVFSSLVSLGYHRF 236
>gi|146162537|ref|XP_001009676.2| Rhomboid family protein [Tetrahymena thermophila]
gi|146146309|gb|EAR89431.2| Rhomboid family protein [Tetrahymena thermophila SB210]
Length = 239
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 100/234 (42%), Gaps = 46/234 (19%)
Query: 81 LLSSQLRKSFFDGKVLFFRAQFPERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFML 140
LL S +FF G + QF F YR ++ V Y L+ AN VF L
Sbjct: 21 LLQSNQPSNFFQG----MKPQFNYNRVNQFFYRM--------NNPVTYSLLGANLLVFGL 68
Query: 141 W--RIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRT 198
+ R+ P +NFT+ R HTL T +F+H ++ H+ +NMIGLYFFG I
Sbjct: 69 YQFRVIKPSTFIDNFTLGQKQINQHRYHTLATYSFAHTNLMHLGANMIGLYFFGKFIENQ 128
Query: 199 LGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRT--------------- 243
G L KLY GA+ G +F L L + KR + S +
Sbjct: 129 FGSRALAKLYFGGALLGGIFIL-----LDLYKKRSNQIHIGASASISAIVTNFTLNFPRL 183
Query: 244 ---------PA--LGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRR 286
PA LG+ ++ + ++ N ++S HLGG L++ +++
Sbjct: 184 TVYFFFIPMPAWVLGILILLQSVV-FYGDNGSVSHQGHLGGIVFGGLSYFLMKK 236
>gi|449018432|dbj|BAM81834.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
10D]
Length = 322
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 4/110 (3%)
Query: 115 RSWLRQYGSSEVVYGLIIANTAVFMLW--RIADPKFMANNFTISLDNFLSGRLHTLITSA 172
RSW + G + LI+ N V++ W R P FM +F SL++ +GR HTL+TS+
Sbjct: 7 RSWASREG--RTILSLILLNGLVYLAWKSRPGGPPFMWRHFACSLESLYAGRTHTLLTSS 64
Query: 173 FSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
SH+ H++ NM L FG+ + + LGP L LY GA S L+Y
Sbjct: 65 ISHMGFLHLLGNMFLLANFGLDVCKVLGPSRFLTLYAGGAFLSSAMSLLY 114
>gi|424512911|emb|CCO66495.1| predicted protein [Bathycoccus prasinos]
Length = 339
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADP-KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHI 181
+ VV+ LI ANTAV++ W+ + K M +F +S + +G HT +T+AFSH H+
Sbjct: 118 DTSVVWMLIGANTAVYLAWQEPENFKTMRTHFLVSESSLANGYWHTALTAAFSHNSFNHL 177
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
NM LYFFG + G YLL LY+ G + S+ ++ Y +
Sbjct: 178 FGNMFTLYFFGRDVALACGGAYLLNLYLVGGVVSSLAHVGYERY 221
>gi|167525533|ref|XP_001747101.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774396|gb|EDQ88025.1| predicted protein [Monosiga brevicollis MX1]
Length = 310
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 55/102 (53%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM 185
Y LI NTAVF LW + P +M +F S N+ GR +TL+T++FSH + H+ NM
Sbjct: 67 TTYTLIGINTAVFSLWHLQPPHWMIQHFATSEQNWSEGRWYTLLTASFSHQSLMHLAVNM 126
Query: 186 IGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
L F + LG LL LY+ G +G S+ ++ LA
Sbjct: 127 FVLNSFAPPVAAVLGSAGLLTLYLVGGLGASLAHIYESQELA 168
>gi|403416136|emb|CCM02836.1| predicted protein [Fibroporia radiculosa]
Length = 332
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 11/132 (8%)
Query: 103 PERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIA--------DPKF---MAN 151
P R S +R L +++G++ N VF++W +A DP F M
Sbjct: 111 PPRRLQSLWQTFRRKLDSTPPEAIMWGVLALNGVVFVMWHLASIKYRSAGDPGFYRWMIE 170
Query: 152 NFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAG 211
NFT+S N SGR+ TL+TS SH D H++ N + YF ++ LG L LY++G
Sbjct: 171 NFTVSAHNISSGRIWTLLTSCISHEDSSHLLFNALTYYFMAPAVLPMLGNASFLALYLSG 230
Query: 212 AIGGSVFYLVYH 223
+ SV + +H
Sbjct: 231 GLFASVASVFWH 242
>gi|428186653|gb|EKX55503.1| hypothetical protein GUITHDRAFT_50364, partial [Guillardia theta
CCMP2712]
Length = 153
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
Query: 130 LIIANTAVFMLWRIADPKFMA-NNFTISLDNFLSG-RLHTLITSAFSHIDVEHIVSNMIG 187
+I AN VF+LW+ + ++M N+FT+S L +LHTL T+ FSH H+V+NM+
Sbjct: 1 IIGANCVVFVLWQNRNLQYMMWNHFTVSTSGVLQDFKLHTLFTAIFSHPHFWHLVANMVT 60
Query: 188 LYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
L+FFG LG + L+LY+AG + S+ ++++
Sbjct: 61 LWFFGAECLTFLGAQRFLQLYLAGGLTSSICHVLW 95
>gi|428186510|gb|EKX55360.1| hypothetical protein GUITHDRAFT_52711, partial [Guillardia theta
CCMP2712]
Length = 157
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 133 ANTAVFMLWR-IADPKFMANNFTISLDNFL-SGRLHTLITSAFSHIDVEHIVSNMIGLYF 190
N VF +W+ ++ +FMA NF IS GR HT+ITS FSH D H+ +NM L+F
Sbjct: 4 VNVVVFCMWQNLSWRRFMAKNFAISTAAVTQEGRFHTIITSFFSHYDWVHLGANMCCLWF 63
Query: 191 FGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
FG R LG L LY+ G + S+F +++
Sbjct: 64 FGAETLRILGGRKFLALYVGGGLVSSIFQVLW 95
>gi|353235267|emb|CCA67283.1| hypothetical protein PIIN_01116 [Piriformospora indica DSM 11827]
Length = 211
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 63/112 (56%), Gaps = 10/112 (8%)
Query: 113 RWRSWLRQYGSSEVVYGLIIANTAVFMLWRIA-------DP---KFMANNFTISLDNFLS 162
R+R + + +VYG++ N +F + +A DP K+M N T S +N
Sbjct: 3 RFRFFFHRIPGDWLVYGIMGTNVLIFFCFGVAETAFKNGDPQLLKWMYENSTSSAENIRQ 62
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIG 214
GRL TL+TSAF+H +H+ N +GL+ F ++ ++LG LK+Y+ GAIG
Sbjct: 63 GRLWTLVTSAFAHQATDHLFMNTLGLWMFCPAVAQSLGSYAFLKVYLTGAIG 114
>gi|255714867|ref|XP_002553715.1| KLTH0E05390p [Lachancea thermotolerans]
gi|238935097|emb|CAR23278.1| KLTH0E05390p [Lachancea thermotolerans CBS 6340]
Length = 334
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 124 SEVVYGLIIANTAVFMLWRIADP-KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIV 182
S +VYGLI N VF LWR+ +F+ + D+ S +LI SAFSH +V H+
Sbjct: 132 SSLVYGLIGLNCGVFALWRVPQCWRFLQRYMLLEKDHIYSK--WSLIGSAFSHQEVWHLG 189
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
NM+ L+ FG ++ LGP + LY+ A+ GS+ L Y
Sbjct: 190 MNMLALWSFGTTVATMLGPANFMSLYLNSALAGSLLSLWY 229
>gi|409050225|gb|EKM59702.1| hypothetical protein PHACADRAFT_86988 [Phanerochaete carnosa
HHB-10118-sp]
Length = 317
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 11/118 (9%)
Query: 117 WLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMAN-----------NFTISLDNFLSGRL 165
WL S+ + +G++ N AVF W++ + ++ NFT+S+ N +SGR+
Sbjct: 109 WLDSIPSNTIFWGVLGINGAVFCAWQLGAALYQSSGNASLYIALRKNFTVSMQNLMSGRV 168
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
TL+T++FSH + HI +N YF + + LG L LY+ G I SV L ++
Sbjct: 169 WTLLTASFSHEGMMHIFTNAFTFYFMAPPVLQFLGTSGFLALYLGGGIFCSVVSLWWN 226
>gi|389747060|gb|EIM88239.1| rhomboid-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 314
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 60/127 (47%), Gaps = 11/127 (8%)
Query: 103 PERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADP-----------KFMAN 151
P RS F R +L S VVYG++ N VF W +A KFMA
Sbjct: 82 PRRSGLGFFTSLRRFLDGIPPSFVVYGIMALNGIVFAGWWVAIDALKRTRDQTLYKFMAE 141
Query: 152 NFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAG 211
NFT S N+ +GR T +TS FSH HI+ N + YF ++ LG L LY+ G
Sbjct: 142 NFTSSKMNYEAGRWWTALTSCFSHQSFSHILFNGMTFYFMAPAVASILGTSSFLFLYLGG 201
Query: 212 AIGGSVF 218
I S+F
Sbjct: 202 GIFSSLF 208
>gi|302694325|ref|XP_003036841.1| hypothetical protein SCHCODRAFT_47819 [Schizophyllum commune H4-8]
gi|300110538|gb|EFJ01939.1| hypothetical protein SCHCODRAFT_47819 [Schizophyllum commune H4-8]
Length = 180
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 58/96 (60%), Gaps = 3/96 (3%)
Query: 142 RIADPKFMAN---NFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRT 198
R DP +A+ N+T S +N +GR+ TL+TSAFSH ++ H+ NM YF G ++ +
Sbjct: 10 RSGDPSLLASMYRNWTGSWENLKAGRVWTLVTSAFSHSEMGHLFMNMFTFYFMGSAVAQM 69
Query: 199 LGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQG 234
LGP++ L LY+ A+ + + + +++ +S+ G
Sbjct: 70 LGPKHFLTLYLFSAVTSCLGSIAWESYVGRNSRGLG 105
>gi|358059401|dbj|GAA94807.1| hypothetical protein E5Q_01461 [Mixia osmundae IAM 14324]
Length = 266
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 8/111 (7%)
Query: 123 SSEVVYGLIIANTAVFMLWRIA-DPKF-------MANNFTISLDNFLSGRLHTLITSAFS 174
+ ++Y L+ AN VF W+ A +P M FTIS N GR +TLITS FS
Sbjct: 64 TKPLLYSLVGANILVFGAWQYAKEPGAPRGMLARMMRTFTISWHNLQQGRWYTLITSCFS 123
Query: 175 HIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+ + H+ +N+I L F + + +G L LYMA + G V L +A+
Sbjct: 124 QMSLAHLAANLITLVSFAPLVMQVVGNTRFLSLYMAAGLSGGVLQLASNAY 174
>gi|336386238|gb|EGO27384.1| hypothetical protein SERLADRAFT_382112 [Serpula lacrymans var.
lacrymans S7.9]
Length = 321
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 11/108 (10%)
Query: 117 WLRQYGSSEVVYGLIIANTAVFMLWRIADP-----------KFMANNFTISLDNFLSGRL 165
W+ +S + YG+I N VF+ W+ A +F+ +NF + + N SGR+
Sbjct: 113 WIESIPNSVIFYGIIGLNVGVFLTWQAATATWQQTGDTSLIRFLRDNFVVEMRNISSGRI 172
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAI 213
TL+TS FSH D H + N + +F ++ + LG L LY G I
Sbjct: 173 WTLVTSCFSHRDFSHALFNGLTFFFMAPAVMQMLGKTRFLGLYFIGGI 220
>gi|393215578|gb|EJD01069.1| rhomboid-domain-containing protein [Fomitiporia mediterranea
MF3/22]
Length = 330
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 13/132 (9%)
Query: 113 RWRSWLRQYGSSEVVYGLIIANTAVFMLWRIA-------DPKF---MANNFTISLDNFLS 162
R+R W Q+ S +V+G+I N VF+ W+ A DP M+ N S N
Sbjct: 117 RFRRWFDQFPSEFIVWGIIGINGVVFLAWQYAIDRAKNGDPSLLIIMSRNVQNSWRNIRE 176
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
GRL ++I S FSH + HI+ N + YF I +G + LY G I S+ L+
Sbjct: 177 GRLWSIIGSTFSHNNAGHILLNCMSFYFMAPPIVNLIGNTSFMTLYFFGGISCSMLSLLL 236
Query: 223 HAFLAMSSKRQG 234
+ + SKR G
Sbjct: 237 NKTV---SKRDG 245
>gi|449487060|ref|XP_004157483.1| PREDICTED: uncharacterized protein LOC101232438 [Cucumis sativus]
Length = 185
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 55/97 (56%), Gaps = 9/97 (9%)
Query: 63 KTHAFLFNPLLARRFFTSLLSSQLR---KSFFDGKVLFFRAQFPERSFA---SFRYRW-- 114
K H F P++ +RF + ++ + KS + + LF F + F F ++W
Sbjct: 66 KIHGFFSVPVVGKRFIVNPSNTYFKGSMKSVVESRSLFTGTPFSKLKFQLKPGFVHQWGG 125
Query: 115 -RSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMA 150
RSW ++ +EVV GLIIAN AVF+LWRIADP FM+
Sbjct: 126 RRSWFQRLTPNEVVLGLIIANVAVFLLWRIADPIFMS 162
>gi|393246360|gb|EJD53869.1| rhomboid-domain-containing protein [Auricularia delicata TFB-10046
SS5]
Length = 293
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 126 VVYGLIIANTAVFMLWRIADP-----------KFMANNFTISLDNFLSGRLHTLITSAFS 174
VVY ++ NT VF W +A +FM NFT SL N SGR+ TL+TS FS
Sbjct: 90 VVYAILGVNTVVFGAWYMAKNAYTYQNDWRPLQFMLQNFTASLANLSSGRIWTLLTSCFS 149
Query: 175 HIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
H + H N +YF + + LGP + YM I S+ + Y
Sbjct: 150 HEALWHFGLNSACIYFMAPGVCQVLGPGTFIAFYMTTGIISSLTSVAY 197
>gi|452823614|gb|EME30623.1| rhomboid-like protein isoform 2 [Galdieria sulphuraria]
Length = 349
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 100 AQFPERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIAD-PKFMANNFTISLD 158
+ F E S ++R R GS ++ L+ N V++ W+I F++ +FT SL
Sbjct: 71 SMFNELSDMAYRRVKRDLKTPEGS--LLLALVGMNAVVYLAWKIPSFVPFLSRHFTCSLS 128
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGA 212
GR+HTL+T FSH H+ SNM L FG + R + PE LY+AG
Sbjct: 129 TVKGGRVHTLLTCNFSHAGFFHLFSNMFLLMHFGSDVCRIITPERFFVLYLAGG 182
>gi|452823615|gb|EME30624.1| rhomboid-like protein isoform 1 [Galdieria sulphuraria]
Length = 343
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 100 AQFPERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIAD-PKFMANNFTISLD 158
+ F E S ++R R GS ++ L+ N V++ W+I F++ +FT SL
Sbjct: 71 SMFNELSDMAYRRVKRDLKTPEGS--LLLALVGMNAVVYLAWKIPSFVPFLSRHFTCSLS 128
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGA 212
GR+HTL+T FSH H+ SNM L FG + R + PE LY+AG
Sbjct: 129 TVKGGRVHTLLTCNFSHAGFFHLFSNMFLLMHFGSDVCRIITPERFFVLYLAGG 182
>gi|392592913|gb|EIW82239.1| hypothetical protein CONPUDRAFT_54971, partial [Coniophora puteana
RWD-64-598 SS2]
Length = 177
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 142 RIADP---KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRT 198
R DP KFM +FT+S +N +GR+ T++T AFSH D H + N + L+F S+
Sbjct: 1 RGGDPSLLKFMYKHFTVSYENLRAGRIWTVLTGAFSHSDTSHALMNGLSLFFIAPSVLAL 60
Query: 199 LGPEYLLKLYMAGAIGGSV 217
L P L LY++GA+G S+
Sbjct: 61 LSPPRFLALYISGALGASL 79
>gi|384486321|gb|EIE78501.1| hypothetical protein RO3G_03205 [Rhizopus delemar RA 99-880]
Length = 158
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 61/120 (50%), Gaps = 11/120 (9%)
Query: 124 SEVVYGLIIANTAVFMLWRIADP-----------KFMANNFTISLDNFLSGRLHTLITSA 172
++V++ +I N VF++W A FM +FT+S +F SGR +TL+TSA
Sbjct: 4 NKVLWTIIGTNLGVFLVWTYAKNSYSQFGDARWLNFMYRHFTVSEASFDSGRYYTLLTSA 63
Query: 173 FSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKR 232
FSH + H+ NM LY G + +GP L LY + S+ L Y ++ S +R
Sbjct: 64 FSHNLLPHLGMNMFVLYSMGQGVLEAIGPSRFLLLYAGAGLCASLTTLAYKKYIRPSLER 123
>gi|365765697|gb|EHN07204.1| Pcp1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 346
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
+VY L+ N AVF LW++ + + ++++ ++ ++I SAFSH + H+ N
Sbjct: 144 NLVYALLGINVAVFGLWQLPKCWRFLQKYMLLQKDYVTSKI-SIIGSAFSHQEFWHLGMN 202
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
M+GL+ FG S+ LG LYM AI GS+F L Y
Sbjct: 203 MLGLWSFGTSLATMLGASNFFSLYMNSAIAGSLFSLWY 240
>gi|342321150|gb|EGU13085.1| Hypothetical Protein RTG_00611 [Rhodotorula glutinis ATCC 204091]
Length = 338
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 59/124 (47%), Gaps = 11/124 (8%)
Query: 114 WRSWLRQYGSSEVVYGLIIANTAVFMLW--------RIADP---KFMANNFTISLDNFLS 162
WR + +V LI N AV+ W R D +F+ +NFT+S NF
Sbjct: 127 WRDRINSIPPMWMVGVLIALNLAVYAAWQYGFELARRFRDASWLRFLQDNFTVSWHNFTQ 186
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
GR+ TL+TS FSH HI+ NM+ L+FF + LG + LY+ + S L +
Sbjct: 187 GRVWTLLTSTFSHEATGHILINMLSLFFFAPGVITLLGNTGFISLYVFAGVTASAVSLFF 246
Query: 223 HAFL 226
+ F
Sbjct: 247 NRFF 250
>gi|390601280|gb|EIN10674.1| rhomboid-domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 314
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 86/211 (40%), Gaps = 25/211 (11%)
Query: 49 HPTFSWRSQQSLSLKTHAFLFNPLLARR--FFTSLLSSQLRKSFFDGKVLFFRAQFPERS 106
H FS S+ S ++ + F + + ARR F SL ++ SF K RA +
Sbjct: 27 HYAFSALSRVSPAVVSGQFFSSRVCARRTIFSPSLSTASGSGSFTSWKAYILRATHRDYR 86
Query: 107 FASFR------------YRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKF------ 148
ASF + + S + + +I AN VF+ W+ A +F
Sbjct: 87 PASFEERLRSSRGGGGGSGGPGFFNRIPSQVIFWSIIAANGVVFVGWQYAKAQFETGRNT 146
Query: 149 -----MANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
M NN T S +N SGR+ T +TS FSH D+ HI N +F ++ LG
Sbjct: 147 GPMIWMLNNVTSSWNNINSGRIWTPLTSCFSHSDLAHIFVNGFSFFFMAPTVLSLLGNAR 206
Query: 204 LLKLYMAGAIGGSVFYLVYHAFLAMSSKRQG 234
+ LY G I S L + A QG
Sbjct: 207 FIGLYFGGGIISSAVSLAWSAKAGRDRPSQG 237
>gi|145492260|ref|XP_001432128.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124399237|emb|CAK64731.1| unnamed protein product [Paramecium tetraurelia]
Length = 221
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 130 LIIANTAVFMLWRIA--DPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIG 187
LI N V+ LW D FM +FT+ + LHT IT +FSH + H++ NM+
Sbjct: 47 LIGINVGVYALWHFPAFDKNFMYKHFTLHPGSMSLRELHTFITYSFSHQNTLHLLFNMVT 106
Query: 188 LYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
YFFG +I G + LL +Y+AGA+ G +
Sbjct: 107 FYFFGRTIEAYFGSKRLLAVYLAGALVGGL 136
>gi|170088108|ref|XP_001875277.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650477|gb|EDR14718.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 273
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 63/137 (45%), Gaps = 12/137 (8%)
Query: 88 KSFFDGKVLFFRAQFPERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPK 147
+SFF R RS +S R+ + +L Q + + YG+I N VF +W ++ K
Sbjct: 38 RSFFTSTPSSLRYHPLPRSHSS-RHNFFGFLDQIPQNTIFYGIIGLNATVFAMWFMSTQK 96
Query: 148 F-----------MANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIG 196
+ M NFT S N SGR+ T +TS FSH D HI N YF +
Sbjct: 97 YKQEHDPSALVWMHQNFTNSWQNISSGRIWTPVTSCFSHKDFGHIFFNGFTFYFMAQPVL 156
Query: 197 RTLGPEYLLKLYMAGAI 213
+ LG L LY+ G +
Sbjct: 157 QMLGGRSFLFLYIGGGL 173
>gi|145499170|ref|XP_001435571.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124402704|emb|CAK68174.1| unnamed protein product [Paramecium tetraurelia]
Length = 221
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 130 LIIANTAVFMLWRI--ADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIG 187
LI N V+ LW D FM +FT+ + LHT IT +FSH + H++ NM+
Sbjct: 47 LIGINVGVYALWHFPAVDKNFMYRHFTLHPGSMNIRELHTFITYSFSHQNTLHLLFNMVT 106
Query: 188 LYFFGMSIGRTLGPEYLLKLYMAGAIGGS 216
YFFG +I G + LL +Y+AGA+ G
Sbjct: 107 FYFFGRTIEAYFGSKRLLAIYLAGALVGG 135
>gi|301121082|ref|XP_002908268.1| serine protease family S54, putative [Phytophthora infestans T30-4]
gi|262103299|gb|EEY61351.1| serine protease family S54, putative [Phytophthora infestans T30-4]
Length = 285
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 52/105 (49%), Gaps = 17/105 (16%)
Query: 126 VVYGLIIANTAVFMLW-RIADP----------------KFMANNFTISLDNFLSGRLHTL 168
VV GLI AN AV + W R P + M +FT S + GR +TL
Sbjct: 76 VVLGLISANAAVTIGWMRTQAPSPRHPAQQLRSFQPSMRTMLTHFTTSTQHLQDGRYYTL 135
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAI 213
+TS FS + H+ +NM+GLYFFG + LG L LY+A +
Sbjct: 136 LTSMFSQATLGHLGANMLGLYFFGRQLCDLLGHRKFLGLYLASGV 180
>gi|407923843|gb|EKG16906.1| Peptidase S54 rhomboid [Macrophomina phaseolina MS6]
Length = 267
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 88/228 (38%), Gaps = 63/228 (27%)
Query: 120 QYGSSEVVYGLIIANTAVFMLWRIADPKF------------------------------M 149
Q+ S +Y + NTAVF W+ AD +
Sbjct: 39 QHASQRWLYTFLGLNTAVFAAWKYADNTIPFDLKAAFSPETYRQIAKYVQLDKRRLWQGL 98
Query: 150 ANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFG---MSIGRTLGPEYLLK 206
N F D+ GR T IT+AFSH D+ H V NM+ L FG ++ + P L
Sbjct: 99 VNQFVFKTDDPERGRWWTCITAAFSHKDLPHFVFNMLALKSFGDALIAYVPRINPASFLT 158
Query: 207 LYMAGAIGGSV-FYL------------------------VYHAFLAMSSKRQGMWVVDPS 241
LY+ + GS+ FY A +A ++K Q ++ P
Sbjct: 159 LYLGAGLAGSLGFYYQKKAQGNRQQSAAIGASGAVSGLAATMALIAPNAKWQFAFI--PI 216
Query: 242 RTPALGVF--LIGKDMLRIIEGNSNISGSAHLGGAAV-AALAWARIRR 286
PA +F I D + + NS + S H+GGAA AA W +RR
Sbjct: 217 GIPAWAMFSAYIAYDAFYLNDPNSRVGHSGHIGGAAFGAAYYWLVVRR 264
>gi|401625685|gb|EJS43683.1| pcp1p [Saccharomyces arboricola H-6]
Length = 346
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
+VY L+ N AVF LW++ + + + +S + ++I SAFSH + H+ N
Sbjct: 144 NLVYALLGINVAVFGLWQLPKCWRFLQKYMLLQKDHISSKF-SIIGSAFSHQEFWHLGMN 202
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
M+ L+ FG S+ TLG LYM AI GS+F L Y
Sbjct: 203 MLALWSFGTSLSVTLGASNFFSLYMNSAIAGSLFSLWY 240
>gi|6321538|ref|NP_011615.1| Pcp1p [Saccharomyces cerevisiae S288c]
gi|1723691|sp|P53259.1|PCP1_YEAST RecName: Full=Rhomboid protein 1, mitochondrial; AltName:
Full=Mitochondrial distribution and morphology protein
37; AltName: Full=Processing of cytochrome c peroxidase
protein 1; Flags: Precursor
gi|1323155|emb|CAA97104.1| unnamed protein product [Saccharomyces cerevisiae]
gi|151943378|gb|EDN61691.1| rhomboid protease [Saccharomyces cerevisiae YJM789]
gi|190406879|gb|EDV10146.1| rhomboid protease [Saccharomyces cerevisiae RM11-1a]
gi|256269416|gb|EEU04713.1| Pcp1p [Saccharomyces cerevisiae JAY291]
gi|259146603|emb|CAY79860.1| Pcp1p [Saccharomyces cerevisiae EC1118]
gi|285812294|tpg|DAA08194.1| TPA: Pcp1p [Saccharomyces cerevisiae S288c]
gi|323348615|gb|EGA82859.1| Pcp1p [Saccharomyces cerevisiae Lalvin QA23]
gi|323354923|gb|EGA86755.1| Pcp1p [Saccharomyces cerevisiae VL3]
Length = 346
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
+VY L+ N AVF LW++ + + ++++ ++ ++I SAFSH + H+ N
Sbjct: 144 NLVYALLGINVAVFGLWQLPKCWRFLQKYMLLQKDYVTSKI-SIIGSAFSHQEFWHLGMN 202
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
M+ L+ FG S+ LG LYM AI GS+F L Y
Sbjct: 203 MLALWSFGTSLATMLGASNFFSLYMNSAIAGSLFSLWY 240
>gi|392299357|gb|EIW10451.1| Pcp1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 346
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
+VY L+ N AVF LW++ + + ++++ ++ ++I SAFSH + H+ N
Sbjct: 144 NLVYALLGINVAVFGLWQLPKCWRFLQKYMLLQKDYVTSKI-SIIGSAFSHQEFWHLGMN 202
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
M+ L+ FG S+ LG LYM AI GS+F L Y
Sbjct: 203 MLALWSFGTSLATMLGASNFFSLYMNSAIAGSLFSLWY 240
>gi|349578313|dbj|GAA23479.1| K7_Pcp1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 346
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
+VY L+ N AVF LW++ + + ++++ ++ ++I SAFSH + H+ N
Sbjct: 144 NLVYALLGINVAVFGLWQLPKCWRFLQKYMLLQKDYVTSKI-SIIGSAFSHQEFWHLGMN 202
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
M+ L+ FG S+ LG LYM AI GS+F L Y
Sbjct: 203 MLALWSFGTSLATMLGASNFFSLYMNSAIAGSLFSLWY 240
>gi|390333097|ref|XP_003723640.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like [Strongylocentrotus purpuratus]
gi|390333099|ref|XP_781024.2| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like isoform 1 [Strongylocentrotus
purpuratus]
Length = 356
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 104 ERSFASFRYRWRSWL-RQYGSSEVVYGLIIANTAVFMLWRI-ADPKFMANNFTISLDNFL 161
ER R W R G+ +VV G+++AN AVF WRI A FM F S +
Sbjct: 127 ERKQGELREMMNQWYSRLSGTQKVVLGIVVANVAVFAFWRIPAMQHFMIQWF--SANPAA 184
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS 216
S +I S FSH + H+ NM L+ F SIG LG E L +Y++ + S
Sbjct: 185 SATCLPMILSVFSHHSLWHLGVNMYVLWSFSGSIGSVLGKEQFLAMYLSAGVWAS 239
>gi|406699052|gb|EKD02271.1| hypothetical protein A1Q2_03418 [Trichosporon asahii var. asahii
CBS 8904]
Length = 327
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 11/95 (11%)
Query: 130 LIIANTAVFMLW--------RIADPK---FMANNFTISLDNFLSGRLHTLITSAFSHIDV 178
++ N AVF+ W R DP M NF +++ N +GR+ LITS FSH+
Sbjct: 130 ILAINIAVFLGWQYAINTYERFGDPSAYYTMLKNFILNVPNMQAGRIWVLITSCFSHMTT 189
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAI 213
HI+ N IGL+F G ++ LG L Y+ I
Sbjct: 190 THILVNSIGLWFAGPAVASILGTSGYLLFYLGAGI 224
>gi|207345124|gb|EDZ72047.1| YGR101Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 257
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
+VY L+ N AVF LW++ + + ++++ ++ ++I SAFSH + H+ N
Sbjct: 144 NLVYALLGINVAVFGLWQLPKCWRFLQKYMLLQKDYVTSKI-SIIGSAFSHQEFWHLGMN 202
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
M+ L+ FG S+ LG LYM AI GS+F L Y
Sbjct: 203 MLALWSFGTSLATMLGASNFFSLYMNSAIAGSLFSLWY 240
>gi|443894789|dbj|GAC72136.1| integral membrane protease of the rhomboid family [Pseudozyma
antarctica T-34]
Length = 406
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 58/130 (44%), Gaps = 12/130 (9%)
Query: 115 RSWLRQYGSSEVVYGLIIANTAVFMLW--------RIADPK---FMANNFTISLDNFLSG 163
R W R + + V+ +I NT VF+ W R ADP+ M+ NF N G
Sbjct: 191 RFWSR-FDARAVILAVIGVNTLVFVGWAWARENMQRFADPRAMITMSKNFLSGEINMREG 249
Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
R TL+TS FSH H++ NM+ L F + GP L LY G I SV +V
Sbjct: 250 RWWTLLTSCFSHEAPMHLLFNMVTLGFMSPPVVALTGPTMFLVLYCGGGIISSVVSMVGK 309
Query: 224 AFLAMSSKRQ 233
+R+
Sbjct: 310 RVFETEEQRR 319
>gi|320164531|gb|EFW41430.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 451
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 123 SSEVVYGLIIANTAVFMLWRI-ADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHI 181
S ++++G++ NT VF WRI A FM NNF L + SGR + SAFSH D H
Sbjct: 238 SVKLMWGIVGLNTLVFAAWRIPALLPFMYNNF---LSHPGSGRALPKLLSAFSHRDPVHF 294
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
NM LY FG + LG E + L++ A+G S+ +Y
Sbjct: 295 GINMFALYGFGQVSQQDLGSEQFVALFLTAAVGSSLASHLY 335
>gi|330841208|ref|XP_003292594.1| hypothetical protein DICPUDRAFT_157323 [Dictyostelium purpureum]
gi|325077157|gb|EGC30889.1| hypothetical protein DICPUDRAFT_157323 [Dictyostelium purpureum]
Length = 326
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 60/123 (48%), Gaps = 13/123 (10%)
Query: 110 FRYRWRSWLRQYG--------SSEVVYGLIIANTAVFMLWRIADP----KFMANNFTISL 157
F + +SW R+ +S ++Y LI NTA F+ D + + F +SL
Sbjct: 87 FEFNDKSWSREQKERYFNSTKTSNIIYVLIGINTAAFLYINSNDDYSFQRQIDRGFLLSL 146
Query: 158 DNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
DNF S L TLITS F+H H + NM+GLY G + T+G LYMA I +
Sbjct: 147 DNFFSQPL-TLITSFFAHKSFGHFLFNMVGLYTIGPMVLSTIGASSFFGLYMASGIASGL 205
Query: 218 FYL 220
+L
Sbjct: 206 GFL 208
>gi|156357624|ref|XP_001624315.1| predicted protein [Nematostella vectensis]
gi|156211085|gb|EDO32215.1| predicted protein [Nematostella vectensis]
Length = 221
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 50/89 (56%)
Query: 129 GLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGL 188
G+I NT VF+LW+I P+ A+ + + + + T++TS FSH+D H+ NM L
Sbjct: 14 GIIFVNTVVFLLWKIPAPRMQASMWRWFISHPIIASPVTILTSCFSHMDFWHLAINMYVL 73
Query: 189 YFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
+ F +I LG E + Y++G + S+
Sbjct: 74 WSFAPTIQALLGREQFIAFYLSGGMFASL 102
>gi|323309049|gb|EGA62278.1| Pcp1p [Saccharomyces cerevisiae FostersO]
gi|323333532|gb|EGA74926.1| Pcp1p [Saccharomyces cerevisiae AWRI796]
Length = 237
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
+VY L+ N AVF LW++ + + ++++ ++ ++I SAFSH + H+ N
Sbjct: 35 NLVYALLGINVAVFGLWQLPKCWRFLQKYMLLQKDYVTSKI-SIIGSAFSHQEFWHLGMN 93
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
M+ L+ FG S+ LG LYM AI GS+F L Y
Sbjct: 94 MLALWSFGTSLATMLGASNFFSLYMNSAIAGSLFSLWY 131
>gi|401841107|gb|EJT43635.1| PCP1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 346
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 125 EVVYGLIIANTAVFMLWRIADP-KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVS 183
+VY L+ N AVF LW++ KF+ + D+ S ++I SAFSH + H+
Sbjct: 144 NLVYALLGINVAVFGLWQLPKCWKFLQKYMLLQKDHITSK--FSIIGSAFSHQEFWHLGM 201
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
NM+ L+ FG+S+ LG LY+ AI GS+F L Y
Sbjct: 202 NMLALWSFGVSLSTMLGASNFFSLYINSAIAGSMFSLWY 240
>gi|353235265|emb|CCA67281.1| hypothetical protein PIIN_01114 [Piriformospora indica DSM 11827]
Length = 203
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 86/182 (47%), Gaps = 37/182 (20%)
Query: 126 VVYGLIIANTAVFMLWRIADP----------KFMANNFTISLDNFLSGRLHTLITSAFSH 175
+VYG+I N +VF+ + A K+MA NFT S N GR+ TL+TSAF+H
Sbjct: 8 LVYGIIGINISVFLCFYAAKSTFKRGDARSLKWMAENFTFSAGNIRQGRIWTLVTSAFAH 67
Query: 176 IDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH---------AFL 226
H++ N +GL+ + LG L +Y+AGA+G S+ ++ A
Sbjct: 68 HSTIHLLMNTLGLWRL-RPDAQYLGSYSFLTVYLAGAVGSSLASAYWNQNHPVHGMGASG 126
Query: 227 AMSSKRQGMWVVDPSRTPAL------------GVFLIGKDMLRIIEGN---SNISGSAHL 271
AM++ + M + P + L G+FL D+ R+ G+ ++I H+
Sbjct: 127 AMNAVKSFMACMTPRSSVTLFGIPMSLWVAEAGIFL--YDLYRVESGSRRLTSIGFEGHI 184
Query: 272 GG 273
GG
Sbjct: 185 GG 186
>gi|395330567|gb|EJF62950.1| rhomboid-domain-containing protein [Dichomitus squalens LYAD-421
SS1]
Length = 315
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 11/112 (9%)
Query: 113 RWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKF-----------MANNFTISLDNFL 161
R+R L + + +G+I N VF+ W+ A K+ M N+F S DN
Sbjct: 103 RFRDRLNAIPGNVLFWGIIGLNGVVFVSWQWAWAKYKSMGDASSYIWMRNHFIASADNIK 162
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAI 213
+GR +TL+T+ FSH D HI+ N YF + LG L LY+ G I
Sbjct: 163 AGRWYTLLTACFSHADTSHILFNGFTFYFVAPLVISILGNAGFLSLYLGGGI 214
>gi|443685589|gb|ELT89143.1| hypothetical protein CAPTEDRAFT_153017 [Capitella teleta]
Length = 236
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 100 AQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIADPKFMANNFTISLD 158
++F +S FR R W E V G+I N AVF+LWR+A M F S
Sbjct: 5 SEFTAKS-GQFRNRMNFWFGSLQPGEKVAAGIIAVNVAVFLLWRVAPATVMYKWFAAS-- 61
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAI 213
+ + ++ S+FSH HI++NM L+ F + LGPE LL Y++ +
Sbjct: 62 PYTTTSCWPMLFSSFSHYSPLHILANMCVLWSFAAPVSHRLGPEQLLAFYLSAGV 116
>gi|367015702|ref|XP_003682350.1| hypothetical protein TDEL_0F03280 [Torulaspora delbrueckii]
gi|359750012|emb|CCE93139.1| hypothetical protein TDEL_0F03280 [Torulaspora delbrueckii]
Length = 341
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 57/104 (54%), Gaps = 3/104 (2%)
Query: 120 QYGSSEVVYGLIIANTAVFMLWRIA-DPKFMANNFTISLDNFLSGRLHTLITSAFSHIDV 178
++ S +VYGL+ N VF LW++ + + + + D+ S ++I SAFSH ++
Sbjct: 134 KHNPSHMVYGLLGINAVVFGLWQLPRNWRILQRYMMLEKDHIYSK--WSVIGSAFSHQEL 191
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
H+ NM+ L+ FG S+ LG LYM A+ GS+F L Y
Sbjct: 192 WHLGMNMLALWSFGTSLASILGASNFFSLYMNSAVAGSLFSLWY 235
>gi|388582242|gb|EIM22547.1| hypothetical protein WALSEDRAFT_68015 [Wallemia sebi CBS 633.66]
Length = 243
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 122 GSSEVVYGLIIANTAVFMLWRIADPK---FMANNFTISLDNFLSGRLHTLITSAFSHIDV 178
G++ VYG+ + + A + R DPK FM NFT S N SGR+ TL+TS+F H +
Sbjct: 54 GANVAVYGVFVFSDAQWK--RFNDPKWMRFMLKNFTASWYNISSGRIWTLVTSSFLHTRL 111
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL 220
+ ++ NM+ YF LG L LY G + S L
Sbjct: 112 DSLIFNMLTFYFMAPQAIAMLGARTFLMLYCGGGLAASAVTL 153
>gi|348680946|gb|EGZ20762.1| hypothetical protein PHYSODRAFT_298749 [Phytophthora sojae]
Length = 267
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 84/206 (40%), Gaps = 44/206 (21%)
Query: 126 VVYGLIIANTAVFMLW-RIADP----------------KFMANNFTISLDNFLSGRLHTL 168
VV GLI N M W R P + M +FT S + GR +TL
Sbjct: 58 VVLGLISVNAVTTMAWLRAQAPSPRHPAQRLRSFKPSMRTMLTHFTTSTQHLQEGRYYTL 117
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAI---GGSVFY------ 219
+T+ FS + H+ +NM+GLYFFG + LG L LY+A + +VF
Sbjct: 118 LTAMFSQATLGHLGANMLGLYFFGRQMCDVLGHRKFLGLYLASGVLSSAAAVFEQHLSGR 177
Query: 220 LVYHAFLAMSSKRQGMWVVD----PSRT---------PA--LGVFLIGKDMLR-IIEGNS 263
L Y+ L S G+ + P T PA G I KD + +
Sbjct: 178 LSYN--LGASGAVNGITAMSILLFPHGTLLIFGIVPMPAWLAGSLFIFKDAYSFVTDRQD 235
Query: 264 NISGSAHLGGAAVAALAWARIRRRGF 289
I AHL GA + + + +RR GF
Sbjct: 236 GIGHVAHLSGAFIGGVYYYYLRRGGF 261
>gi|444319963|ref|XP_004180638.1| hypothetical protein TBLA_0E00580 [Tetrapisispora blattae CBS 6284]
gi|387513681|emb|CCH61119.1| hypothetical protein TBLA_0E00580 [Tetrapisispora blattae CBS 6284]
Length = 353
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 125 EVVYGLIIANTAVFMLWRIADP-KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVS 183
E+VY L+ N A+F LW + KF+ + N S ++I S+FSH + H+
Sbjct: 151 ELVYTLLGINCAIFGLWHVPRCWKFLQKYMLLQKTNIQSK--WSIIGSSFSHQEFWHLGF 208
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
NM+ L+ FG+S+ LG LYM AI GS+F L Y
Sbjct: 209 NMLALWSFGISLANMLGVSNFFSLYMNSAIAGSLFSLWY 247
>gi|58264256|ref|XP_569284.1| hypothetical protein CNB05400 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57223934|gb|AAW41977.1| hypothetical protein CNB05400 [Cryptococcus neoformans var.
neoformans JEC21]
Length = 330
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 77/177 (43%), Gaps = 28/177 (15%)
Query: 72 LLARRFFTSLLSSQLRKSFFDGKVLFFRAQF---------PERSFASFRYRWRSWLRQYG 122
LL +R FTS +S +R ++F + P F R R + +
Sbjct: 85 LLTKRSFTSSTNSLIRSTYFPRGGRSGGNGYGSGGGGPQGPWAWFTRLRRR----IDRIP 140
Query: 123 SSEVVYGLIIANTAVFMLWRIA--------------DPKFMANNFTISLDNFLSGRLHTL 168
+ +VYGLI N AVF+LW+ A M++ + L + + R TL
Sbjct: 141 TMTLVYGLIGINGAVFLLWQYALSSASTSFPGECRCISPLMSHLEHVHLADETTSRW-TL 199
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+TSAFSH + HI N +GLYF + +G L LY+ + S+ L YH F
Sbjct: 200 VTSAFSHSNGTHIFVNCLGLYFLAPAAASIMGSASFLGLYLGAGVFSSLVSLGYHRF 256
>gi|281200772|gb|EFA74990.1| rhomboid family protein [Polysphondylium pallidum PN500]
Length = 342
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 148 FMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKL 207
FM NFT+S N L R +TL+T+AFSH D++H + NM+GLY G S+ G L L
Sbjct: 161 FMYKNFTLSTQN-LRERPYTLLTAAFSHNDLQHFLFNMLGLYTIGGSLLAATGTPLFLGL 219
Query: 208 YMAGAIGGSVFY 219
Y+ GA+ S Y
Sbjct: 220 YLGGAVFSSFIY 231
>gi|242005576|ref|XP_002423640.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212506800|gb|EEB10902.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 348
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 107/272 (39%), Gaps = 59/272 (21%)
Query: 55 RSQQSLSLKTHAFLFNPLLARRFFTSLLSSQ-----------LRKSFFDGKVLFFRAQFP 103
S QS SL FLF + + F Q L+K++ K++ +R +
Sbjct: 68 NSHQSFSLLWKPFLFTAIFSGASFAGTAIWQYENIRKKAFLLLQKNWITDKLVVYRQK-- 125
Query: 104 ERSFASFRYRWRS-----WLRQYGSSEVVYGLIIANTAVFMLWRIAD-PKFMANNFTISL 157
+Y+WR W R ++ + N+ VF+ W++ FM F S
Sbjct: 126 -------KYKWRQEFNKLWNRLTEGEKLFVPICFINSLVFLAWKVKKFQPFMIKYFCSS- 177
Query: 158 DNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAI---- 213
F +I S FSH H+ +NM LY F S LG E L LY+AGA+
Sbjct: 178 -PFNEAVCWPMILSTFSHYSFFHLAANMYVLYSFSTSGVEDLGKEQFLGLYLAGAVISSF 236
Query: 214 ------------------GGSVFYLVYHAFLAMSSKRQGM----WVVDPSRTPALGVFLI 251
G++ +V + + + + W+V + A G+ +I
Sbjct: 237 TSYLYKICRSQHTLSIGASGAIMAMVAYVCVKYPDAKLSIILLPWIV---FSAASGIKII 293
Query: 252 -GKDMLRIIEGNSNISGSAHLGGAAVAALAWA 282
D+L I+ G + +AHLGG ++ L W
Sbjct: 294 MSLDVLGILRGWAYFDHAAHLGG-SLCGLGWC 324
>gi|410084152|ref|XP_003959653.1| hypothetical protein KAFR_0K01640 [Kazachstania africana CBS 2517]
gi|372466245|emb|CCF60518.1| hypothetical protein KAFR_0K01640 [Kazachstania africana CBS 2517]
Length = 343
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
Query: 126 VVYGLIIANTAVFMLWRIADP-KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
+VY L+ NTA+F LW++ +F+ + D+ S +++ SAFSH + H+ N
Sbjct: 143 LVYILLGINTAIFGLWQLPRCWRFLQKYMLLQKDHIQSK--WSIVGSAFSHQEFWHLGFN 200
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMS 229
M+ L+ FG S+ LG LYM AI GS+F L Y MS
Sbjct: 201 MLALWSFGTSLASMLGTSNFFSLYMNSAIAGSLFSLWYPKIARMS 245
>gi|432916076|ref|XP_004079280.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like [Oryzias latipes]
Length = 383
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 74/175 (42%), Gaps = 27/175 (15%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSG-RLHTLITSAFSHIDVEHIVS 183
+ V G+I NTAV WRI P N N +S R +I S+FSH + H+V+
Sbjct: 164 KTVTGIIAINTAVLCCWRI--PSMQRNMIKYFTSNPVSKTRCLPMILSSFSHYSIIHMVA 221
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYM-AGAIGGSVFYLV------YHAFLAMSSKRQGMW 236
NM L+ F I LG E L +Y+ AG I V Y+ +H L S +
Sbjct: 222 NMYVLWTFSSGIVSLLGKEQFLAVYLSAGVISTMVSYICKTATGRFHPSLGASGAVMAVL 281
Query: 237 VVDPSRTPA--LGVF---------------LIGKDMLRIIEGNSNISGSAHLGGA 274
++ P LG+ L+ D + +I G +AHLGGA
Sbjct: 282 AAVCAKVPEAKLGIIFLPMFTFSAGNALKALVALDTVGLILGWRLFDHAAHLGGA 336
>gi|196003924|ref|XP_002111829.1| hypothetical protein TRIADDRAFT_55255 [Trichoplax adhaerens]
gi|190585728|gb|EDV25796.1| hypothetical protein TRIADDRAFT_55255 [Trichoplax adhaerens]
Length = 327
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 81/185 (43%), Gaps = 20/185 (10%)
Query: 61 SLKTHAFLFNPLLARRFFTSLLSSQLRKSFFDGKVLFFRAQFPERSF---------ASFR 111
+L T F+F+ + FT + ++ K G + R + P + F FR
Sbjct: 71 NLVTKPFIFSVAVCAVSFTGAIIAEYEKMRSLGIMGLSRIRGPFKDFFQDFTRYKNGEFR 130
Query: 112 YRWRSWLRQYGSSEVVYGLIIA-NTAVFMLWRIADPK---FMANNFTISLDNFLSGRLHT 167
+ W S V IIA N VF LW+I PK FM FT +N SGR T
Sbjct: 131 RKLNRWWNSLPDSRKVATTIIAINAGVFALWKI--PKLFPFMVRWFT---NNPASGRSIT 185
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
L+TS FSH D H+ NM L+ F LG E Y++ + S+ +YH LA
Sbjct: 186 LLTSTFSHFDWWHLGMNMFVLWNFAPLACDILGKEQFFATYISAGVFASLGQNLYH--LA 243
Query: 228 MSSKR 232
+ S R
Sbjct: 244 IRSTR 248
>gi|134107704|ref|XP_777463.1| hypothetical protein CNBB0370 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260155|gb|EAL22816.1| hypothetical protein CNBB0370 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 339
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 77/177 (43%), Gaps = 28/177 (15%)
Query: 72 LLARRFFTSLLSSQLRKSFFDGKVLFFRAQF---------PERSFASFRYRWRSWLRQYG 122
LL +R FTS +S +R ++F + P F R R + +
Sbjct: 85 LLTKRSFTSSTNSLIRSTYFPRGGRSGGNGYGSGGGGPQGPWAWFTRLRRR----IDRIP 140
Query: 123 SSEVVYGLIIANTAVFMLWRIA--------------DPKFMANNFTISLDNFLSGRLHTL 168
+ +VYGLI N AVF+LW+ A M++ + L + + R TL
Sbjct: 141 TMTLVYGLIGINGAVFLLWQYALSSASTSFPGECRCISPLMSHLEHVHLADETTSRW-TL 199
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+TSAFSH + HI N +GLYF + +G L LY+ + S+ L YH F
Sbjct: 200 VTSAFSHSNGTHIFVNCLGLYFLAPAAASIMGSASFLGLYLGAGVFSSLVSLGYHRF 256
>gi|50288543|ref|XP_446701.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526009|emb|CAG59628.1| unnamed protein product [Candida glabrata]
Length = 341
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 120 QYGSSEVVYGLIIANTAVFMLWRIADP-KFMANNFTISLDNFLSGRLHTLITSAFSHIDV 178
++ ++VY ++ N VF +WRI +F+ + D+ S ++ SAFSH +
Sbjct: 134 KHNPKDLVYAILGTNLLVFGMWRIPQCWRFLQKYMLLQKDHMASK--WAIVGSAFSHQEF 191
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
H+ NM+ L+ FG S+ LG LYM AI GS+F L Y
Sbjct: 192 WHLGMNMLALWSFGTSLASILGTANFFSLYMNSAIAGSLFSLWY 235
>gi|449304247|gb|EMD00255.1| hypothetical protein BAUCODRAFT_64340 [Baudoinia compniacensis UAMH
10762]
Length = 254
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 62/110 (56%), Gaps = 10/110 (9%)
Query: 121 YGSSE-VVYGLIIANTAVFMLWRIAD-------PKFMANNFTISLDNFLSGRLHTLITSA 172
Y S+E V++ LI N AVF W+ A K + N T+SL NF +GR TL+T+A
Sbjct: 31 YTSAENVIWTLISLNIAVFGTWQYARYTQNSKLIKQLKENATLSLANFEAGRYWTLLTAA 90
Query: 173 FSHIDVEHIVSNMIGLYFFG--MSIGRTLGPEYLLKLYMAGAIGGSVFYL 220
FSH + HI+ NM+ L FG +S +G ++L L + A+ GS +L
Sbjct: 91 FSHTEWWHILFNMMSLRAFGSILSFFPGVGGGHILALSVGSALAGSGGWL 140
>gi|254580427|ref|XP_002496199.1| ZYRO0C12760p [Zygosaccharomyces rouxii]
gi|238939090|emb|CAR27266.1| ZYRO0C12760p [Zygosaccharomyces rouxii]
Length = 363
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 124 SEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVS 183
S +VYG++ N AVF LW+ + + N++ + +LI SAFSH + H+
Sbjct: 160 SHMVYGILGLNLAVFGLWQFPRYWRFLQRYMLLEKNYVYSK-WSLIGSAFSHQEFWHLGM 218
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
NM+ L+ FG S+ +G LYM AI GS+F L Y
Sbjct: 219 NMLALWSFGTSLSYMIGASNFFSLYMNCAISGSLFSLWY 257
>gi|71009442|ref|XP_758274.1| hypothetical protein UM02127.1 [Ustilago maydis 521]
gi|46098016|gb|EAK83249.1| hypothetical protein UM02127.1 [Ustilago maydis 521]
Length = 392
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 11/119 (9%)
Query: 126 VVYGLIIANTAVFMLW--------RIADPK---FMANNFTISLDNFLSGRLHTLITSAFS 174
V+Y +I N VF+ W R +DP+ F++ NF L N GR T++TS S
Sbjct: 187 VLYTIIALNVLVFVGWMYASESLRRFSDPRAYIFLSKNFLSGLTNVSDGRWWTMLTSCVS 246
Query: 175 HIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQ 233
H ++ H + NM+ L F + GP + LY + S+ ++ A + +++++
Sbjct: 247 HEELNHFLLNMVSLAFMAPPVLALTGPTTFVLLYFGAGMVSSIVSMIGKALVPPATQQK 305
>gi|367001270|ref|XP_003685370.1| hypothetical protein TPHA_0D03000 [Tetrapisispora phaffii CBS 4417]
gi|357523668|emb|CCE62936.1| hypothetical protein TPHA_0D03000 [Tetrapisispora phaffii CBS 4417]
Length = 346
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 53/102 (51%), Gaps = 7/102 (6%)
Query: 124 SEVVYGLIIANTAVFMLWRIADPK---FMANNFTISLDNFLSGRLHTLITSAFSHIDVEH 180
+ ++Y L+ N VFM+W+ PK F+ + N S +LI SAFSH + H
Sbjct: 142 THLIYTLLGINAVVFMMWQ--SPKSWRFLQRYMLLEKSNIYSK--WSLIGSAFSHQEFWH 197
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
+ NM+ L+ FG S+ LG LYM AI GS+F L Y
Sbjct: 198 LGMNMLALWSFGTSLATMLGVSNFFSLYMNSAIVGSLFSLWY 239
>gi|156837355|ref|XP_001642705.1| hypothetical protein Kpol_359p8 [Vanderwaltozyma polyspora DSM
70294]
gi|156113265|gb|EDO14847.1| hypothetical protein Kpol_359p8 [Vanderwaltozyma polyspora DSM
70294]
Length = 348
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 53/100 (53%), Gaps = 3/100 (3%)
Query: 124 SEVVYGLIIANTAVFMLWRI-ADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIV 182
S +VY ++ N VF LW++ + +F+ + N S +LI SAFSH + H+
Sbjct: 145 SHLVYTILGLNVVVFGLWQLPKNWRFLQRYMLLEKSNIYSK--WSLIGSAFSHQEGWHLA 202
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
NM+ L+ FG S+ LG LYM A+G S+F L Y
Sbjct: 203 MNMLALWSFGTSLCSMLGASNFFSLYMNSALGASLFSLWY 242
>gi|212543197|ref|XP_002151753.1| rhomboid family protein, putative [Talaromyces marneffei ATCC
18224]
gi|210066660|gb|EEA20753.1| rhomboid family protein, putative [Talaromyces marneffei ATCC
18224]
Length = 567
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 2/115 (1%)
Query: 112 YRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITS 171
Y R W ++ + GL+ N V+MLW++ M N + IS+ L +++ S
Sbjct: 340 YYKRMWKDIPPAAATIMGLMATNVGVWMLWKLPPAWRMLNQYFISVP--LYPYAMSVVGS 397
Query: 172 AFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
FSH +H+++N + L+ G+ + +G L LY+A + GS+ L H L
Sbjct: 398 VFSHQQFKHLLTNTVILWLIGLRLHDEIGRGNFLSLYLASGVVGSLISLTSHVLL 452
>gi|375011064|ref|YP_004988052.1| hypothetical protein [Owenweeksia hongkongensis DSM 17368]
gi|359346988|gb|AEV31407.1| putative membrane protein [Owenweeksia hongkongensis DSM 17368]
Length = 270
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 24/172 (13%)
Query: 131 IIANTAVFMLWRIADPKFMANNFTISLDNFLSGR-LHTLITSAFSHIDVEHIVSNMIGLY 189
+IA + L + F+ + +T + L G+ + +I+S F H+D H++ NM+ L+
Sbjct: 10 LIAANVIISLQGFKNRAFL-DKWTFEVGKILGGKEYYRMISSGFVHVDGNHLLFNMLSLF 68
Query: 190 FFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH--------------------AFLAMS 229
FF +I R+LG E LL +Y + GS+F LV H A +A+
Sbjct: 69 FFAGNIERSLGIEGLLAVYFGSLLAGSLFSLVVHRNSPGYRAVGASGAVSGVVFAAIALF 128
Query: 230 SKRQGMWVVDPSRTPA--LGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAAL 279
+ + P PA G+ + + I N+ AHLGGA V L
Sbjct: 129 PGMKLGLLFLPIFFPAWVFGLGFVAYSIYGIRSQRDNVGHEAHLGGAIVGLL 180
>gi|302306353|ref|NP_982633.2| AAR092Wp [Ashbya gossypii ATCC 10895]
gi|299788476|gb|AAS50457.2| AAR092Wp [Ashbya gossypii ATCC 10895]
gi|374105832|gb|AEY94743.1| FAAR092Wp [Ashbya gossypii FDAG1]
Length = 335
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 53/102 (51%), Gaps = 7/102 (6%)
Query: 124 SEVVYGLIIANTAVFMLWRIADPKF---MANNFTISLDNFLSGRLHTLITSAFSHIDVEH 180
+ + Y +I N VF LW+ P+F + + D+ S +LI SAFSH + H
Sbjct: 132 AHLTYAIIGLNCVVFGLWQ--RPRFWLPLQRYALLQKDHIYSK--WSLIGSAFSHQEFWH 187
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
NMI L+ FG S+ +LGP LYM A+G S+F L Y
Sbjct: 188 FGMNMICLWSFGTSLAMSLGPANFASLYMNSALGASLFSLWY 229
>gi|365992034|ref|XP_003672845.1| hypothetical protein NDAI_0L01170 [Naumovozyma dairenensis CBS 421]
gi|410729917|ref|XP_003671137.2| hypothetical protein NDAI_0G01180 [Naumovozyma dairenensis CBS 421]
gi|401779956|emb|CCD25894.2| hypothetical protein NDAI_0G01180 [Naumovozyma dairenensis CBS 421]
Length = 362
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 125 EVVYGLIIANTAVFMLWRIA-DPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVS 183
+VY L+ N VF LW+I + F+ + N S ++I SAFSH + H+
Sbjct: 150 HLVYTLLGLNLFVFTLWQIPRNWHFLQKYMLLQKSNIQSN--WSIIGSAFSHQEFWHLGM 207
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPS 241
NM+ L+ FG ++ LG LYM AI GS+F L Y R G+ V+ PS
Sbjct: 208 NMLALWSFGTTLSTVLGASGFFSLYMNSAIMGSLFSLWYPRI-----ARMGLLVMGPS 260
>gi|291240596|ref|XP_002740208.1| PREDICTED: presenilin associated, rhomboid-like isoform 1
preproprotein-like [Saccoglossus kowalevskii]
Length = 358
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 107 FASFRYRWRSWLRQYGSSEVV-YGLIIANTAVFMLWRIADPKF-MANNFTISLDNFLSGR 164
F +FR + W + + V G+I AN VF W++ ++ M N F + + + R
Sbjct: 132 FGNFREKINDWYNKLPEGQCVALGIITANVLVFSAWKVPALQYTMLNWFACNPASRV--R 189
Query: 165 LHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
++ + FSH V HI+ NM L+ F S+ GPE L +Y+ + S F V
Sbjct: 190 CIPMVLATFSHFTVWHILVNMYVLWSFSSSVSEMFGPEQFLAMYLTAGVWSSFFSYV 246
>gi|297526073|ref|YP_003668097.1| Rhomboid family protein [Staphylothermus hellenicus DSM 12710]
gi|297254989|gb|ADI31198.1| Rhomboid family protein [Staphylothermus hellenicus DSM 12710]
Length = 268
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 12/136 (8%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADPKFMANNFT-----------ISLDNFLSGRLHTLITS 171
S V +I+ NT VF+L I +P+ + T I + RL T+ T+
Sbjct: 19 SPVVTLSIILVNTVVFILMYI-EPQLLVPGATNVYEVQRQLAMIPIAIVRGERLWTIFTA 77
Query: 172 AFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSK 231
F+H D+ H++ NMI L+FFG + + + L Y G I VF+++ +
Sbjct: 78 MFTHADIYHLLGNMIFLFFFGGPVESVMSRKRYLLFYFLGGIMADVFHILSITIIPSHYL 137
Query: 232 RQGMWVVDPSRTPALG 247
G +++P TP LG
Sbjct: 138 ITGKTIINPWVTPTLG 153
>gi|393230710|gb|EJD38312.1| hypothetical protein AURDEDRAFT_116565 [Auricularia delicata
TFB-10046 SS5]
Length = 394
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 102 FPERSFASFRYRW-----RSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTIS 156
PER F RW S++ Q S V + AN AVF+ WR P+ +
Sbjct: 120 LPERLQGLFALRWPFDKAESFIYQRDSFRVATAITAANVAVFLAWRC--PRLWRSLGRHG 177
Query: 157 LDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFG 192
+ + LSGR +TL T+ F H DV HI N +YFF
Sbjct: 178 IHHGLSGRSYTLFTAGFCHTDVFHIACNTACIYFFA 213
>gi|363752139|ref|XP_003646286.1| hypothetical protein Ecym_4420 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889921|gb|AET39469.1| hypothetical protein Ecym_4420 [Eremothecium cymbalariae
DBVPG#7215]
Length = 337
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 54/102 (52%), Gaps = 7/102 (6%)
Query: 124 SEVVYGLIIANTAVFMLWRIADPKF---MANNFTISLDNFLSGRLHTLITSAFSHIDVEH 180
+ + Y LI N AVF LW++ P+F + + D+ S +LI SAFSH + H
Sbjct: 134 THLPYALIGINCAVFGLWQL--PRFWLPLQRYALLQKDHIYSK--WSLIGSAFSHQEFWH 189
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
NM+ L+ FG S+ LGP LY+ AI GS+F L Y
Sbjct: 190 FGMNMMCLWSFGTSLAVMLGPANFTSLYLNSAIAGSLFSLWY 231
>gi|124004456|ref|ZP_01689301.1| rhomboid family protein [Microscilla marina ATCC 23134]
gi|123990028|gb|EAY29542.1| rhomboid family protein [Microscilla marina ATCC 23134]
Length = 300
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
T++T AFSH D+ HIV NM+ LY+FGM + L + L+ LY+ GA+ G+V Y++ + F
Sbjct: 63 TVLTYAFSHHDLLHIVFNMLTLYWFGMLVSEYLNSKRLISLYVLGALAGAVSYILIYNF 121
>gi|256425572|ref|YP_003126225.1| rhomboid family protein [Chitinophaga pinensis DSM 2588]
gi|256040480|gb|ACU64024.1| Rhomboid family protein [Chitinophaga pinensis DSM 2588]
Length = 292
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 94/204 (46%), Gaps = 41/204 (20%)
Query: 108 ASFRYRWRSWLRQYGSSE------VVYGLIIANTAVFMLWRIADPK-----FMANNFTIS 156
SF R WLRQ + V+ L++ V+++ +IA F+A+N +I
Sbjct: 4 TSFSADIRYWLRQGNTINLLLFWNVIVFLVVG--IVYLIGKIAPSTGFISLFIADNLSIH 61
Query: 157 LDNFLSGRLH-TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGG 215
+ F R L+T F+H + HI+ NM+ LY+FG LG + +L LY+ G I G
Sbjct: 62 SNVFAFLRKPWGLVTYMFTHFEFLHILFNMLNLYWFGNIFRSFLGNQRILPLYLLGGIAG 121
Query: 216 SVFYLVYH--------------------AFLAMSSK----RQGMWVVDPSRTPALGVFLI 251
+ YL+ + +A ++K G+ ++ R L + +I
Sbjct: 122 GLAYLLVYNLVFGGANVPMIGASASVMAILIACATKLPNYEIGLLLIGTIRLKWLAIIVI 181
Query: 252 GKDMLRIIEGNSNISG-SAHLGGA 274
D++ + +G NI G +AH+GGA
Sbjct: 182 VLDLVSLTQG--NIGGITAHMGGA 203
>gi|126314472|ref|XP_001377876.1| PREDICTED: presenilin associated, rhomboid-like [Monodelphis
domestica]
Length = 378
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 7/137 (5%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K +F + P++ FR R W + V G+I AN VF LWR+
Sbjct: 128 QSYFDGVKADWFDSITPQKE-GDFRKRVNKWWNTLTDGQRTVTGIIAANVFVFCLWRVPS 186
Query: 146 -PKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYL 204
+ M FT S + ++ S FSH + H+++NM L+ F SI LG E
Sbjct: 187 LQRSMIKYFTSSPAS--KALCSPMLLSTFSHFSLFHMMANMYVLWSFSTSIVSILGKEQF 244
Query: 205 LKLYM-AGAIGGSVFYL 220
+ +Y+ AG I V Y+
Sbjct: 245 VAVYLSAGVISTFVSYV 261
>gi|422323890|ref|ZP_16404927.1| hypothetical protein HMPREF0737_00037 [Rothia mucilaginosa M508]
gi|353344683|gb|EHB88984.1| hypothetical protein HMPREF0737_00037 [Rothia mucilaginosa M508]
Length = 270
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 89/201 (44%), Gaps = 40/201 (19%)
Query: 100 AQFPERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDN 159
A P RSF + R W + Y LI+ N V+ L +I +++ N +S +
Sbjct: 61 ASSPTRSFIA-----RHW-------HITYTLILINVVVYGLQQIIPFRWVYNLGAMSGPS 108
Query: 160 FLSGRLHTLITSAFSHI--DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIG--- 214
G + LIT F H D H+V NMI L+ FG+S+ R +G L +YMA +G
Sbjct: 109 VHRGEYYRLITHGFLHSQNDPMHLVWNMIYLFIFGVSLERMMGRWKFLFVYMAATLGAGF 168
Query: 215 ---------------GSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRII 259
G V+ L F+ + +RQ T L + LIG D+++ +
Sbjct: 169 SVYIFDYYSRTVGASGGVYGLYGAFFVILLLRRQ-------KDTARLFMLLIGIDVVQSL 221
Query: 260 EGNSNISGSAHLGGAAVAALA 280
+ +IS + H GG ALA
Sbjct: 222 F-HPHISLAGHFGGLVSGALA 241
>gi|366993543|ref|XP_003676536.1| hypothetical protein NCAS_0E01050 [Naumovozyma castellii CBS 4309]
gi|342302403|emb|CCC70175.1| hypothetical protein NCAS_0E01050 [Naumovozyma castellii CBS 4309]
Length = 348
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
+VYG++ N VF LW++ + + + ++ + +LI SAFSH + H+ N
Sbjct: 137 SLVYGILGVNFLVFGLWQLPRCWPLLQKYMLLSKTHVTSKW-SLIGSAFSHQEFWHLGMN 195
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
M+ L+ FG S+ + LG LYM AI GS+F L Y
Sbjct: 196 MLALWSFGTSLVQVLGVSDFFSLYMGSAITGSLFSLWY 233
>gi|126465643|ref|YP_001040752.1| rhomboid family protein [Staphylothermus marinus F1]
gi|126014466|gb|ABN69844.1| Rhomboid family protein [Staphylothermus marinus F1]
Length = 262
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 12/129 (9%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFT-----------ISLDNFLSGRLHTLITSAFSHIDV 178
+I+ N VF+L I +P+ + T I + RL T+ T+ F+H D+
Sbjct: 20 IILINIVVFILMYI-EPQLLVPGATNAYEVQRQLAMIPIAIVRGERLWTIFTAMFTHADI 78
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVV 238
H++ NMI L+FFG + +G + L Y G I +F+++ + G ++
Sbjct: 79 YHLLGNMIFLFFFGGPVESVMGRKRYLLFYFLGGIMADIFHILSITIIPSQYLITGKIII 138
Query: 239 DPSRTPALG 247
+P TP LG
Sbjct: 139 NPWVTPTLG 147
>gi|242785950|ref|XP_002480704.1| rhomboid family protein, putative [Talaromyces stipitatus ATCC
10500]
gi|218720851|gb|EED20270.1| rhomboid family protein, putative [Talaromyces stipitatus ATCC
10500]
Length = 629
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 2/115 (1%)
Query: 112 YRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITS 171
Y R W ++ + G+I N +V+MLW+I M N + IS+ L +++ S
Sbjct: 401 YGTRMWRDIPPAAATILGIIATNVSVWMLWKIPPAWRMLNRYFISVP--LYPYAMSVVGS 458
Query: 172 AFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
FSH +H+++N + L+ G+ + +G L LY++ + GS L H L
Sbjct: 459 IFSHQQFKHLLTNTVILWLIGLRLHDEIGRGNFLSLYLSSGVIGSFVSLTSHVLL 513
>gi|283782497|ref|YP_003373252.1| rhomboid family protein [Pirellula staleyi DSM 6068]
gi|283440950|gb|ADB19392.1| Rhomboid family protein [Pirellula staleyi DSM 6068]
Length = 290
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 88/203 (43%), Gaps = 39/203 (19%)
Query: 119 RQYGSSEVVYGLIIAN-TAVFMLWRIADPKFMANNFTIS-----LDNFLSGR----LHTL 168
R Y E YG +AN +A L + ++A+ T S + + LS LH L
Sbjct: 6 RDYIRDETPYGGGLANFSATVQLMIVCGVIYLADLLTTSNGKHYISDTLSVNATSFLHPL 65
Query: 169 -----ITSAFSH-IDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
+T+ F H HI+ NMIGLYFFG +I G L+ Y+ + S+F+ V
Sbjct: 66 EWWKFLTAGFVHSARPSHIIGNMIGLYFFGTAIEGRSGRWEFLRFYLLAIVFSSIFWCVT 125
Query: 223 HAFLA--MSSKRQGMWVVD----------PSRTPAL-----------GVFLIGKDMLRII 259
+ +S+ R V P T L G+ +IG D+L++
Sbjct: 126 EYYFGNPLSTARGASGGVTAVVILYCLLYPRSTILLMMFIPMPAWLAGILIIGGDVLQLQ 185
Query: 260 EGNSNISGSAHLGGAAVAALAWA 282
+NI+ +AH+GGA A W+
Sbjct: 186 NQGANIAFTAHIGGALFALAYWS 208
>gi|255326467|ref|ZP_05367549.1| rhomboid family protein [Rothia mucilaginosa ATCC 25296]
gi|255296507|gb|EET75842.1| rhomboid family protein [Rothia mucilaginosa ATCC 25296]
Length = 270
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 88/201 (43%), Gaps = 40/201 (19%)
Query: 100 AQFPERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDN 159
A P RSF + R W + Y LI+ N V+ L I ++M N +S
Sbjct: 61 ASSPTRSFIA-----RHW-------HITYTLILINVVVYGLQLIIPFRWMYNLGMMSGPR 108
Query: 160 FLSGRLHTLITSAFSHI--DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMA------- 210
G + LIT F H D H+V NMI L+ FG+S+ R +G L +YMA
Sbjct: 109 VHHGEYYRLITHGFVHSQNDPMHMVWNMIYLFIFGVSLERMMGRWKFLFVYMAATLGAGL 168
Query: 211 ---------GAIG--GSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRII 259
GA+G G V+ L F+ + +RQ T L + LIG +++ +
Sbjct: 169 SVYLFDYYRGAVGASGGVYGLYGAFFVILLLRRQ-------KDTARLFMLLIGIGVVQSL 221
Query: 260 EGNSNISGSAHLGGAAVAALA 280
+ NIS + H GG ALA
Sbjct: 222 F-HPNISHAGHFGGLVSGALA 241
>gi|401889124|gb|EJT53064.1| hypothetical protein A1Q1_00071 [Trichosporon asahii var. asahii
CBS 2479]
Length = 168
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%)
Query: 149 MANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLY 208
M NF +++ N +GR+ LITS FSH+ HI+ N IGL+F G ++ LG L Y
Sbjct: 1 MLKNFILNVPNMQAGRIWVLITSCFSHMTTTHILVNSIGLWFAGPAVASILGTSGYLLFY 60
Query: 209 MAGAI 213
+ I
Sbjct: 61 LGAGI 65
>gi|66811524|ref|XP_639942.1| rhomboid family protein [Dictyostelium discoideum AX4]
gi|60466888|gb|EAL64932.1| rhomboid family protein [Dictyostelium discoideum AX4]
Length = 341
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 7/107 (6%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADP----KFMANNFTISLDNFLSGRLHTLITSAFSHIDV 178
SS V+Y +I N A++M D + + NF +SLDNF S + TL+TS F+H D
Sbjct: 142 SSSVIYAIIGINVAIWMFLNSDDSYSFQRMIGKNFMLSLDNFKSQPI-TLLTSMFAHTDG 200
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
H++ M LY G ++ +LG +YM I V +L F
Sbjct: 201 FHLL--MFALYSLGPNVLYSLGSSAFFGMYMGAGILSGVGFLAVQKF 245
>gi|228472109|ref|ZP_04056875.1| transmembrane rhomboid family protein [Capnocytophaga gingivalis
ATCC 33624]
gi|228276312|gb|EEK15036.1| transmembrane rhomboid family protein [Capnocytophaga gingivalis
ATCC 33624]
Length = 268
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 87/199 (43%), Gaps = 38/199 (19%)
Query: 115 RSWLRQYGSSEVVYGLIIANTAVFML-------WRIADPKFMANNFTISLD-NFLSGRLH 166
R W + S +VY LI++ ++L W+ DP F+ + F +S D + L +
Sbjct: 7 RIWGKH--SLSLVYILIVSYLCGYILPQLFAFLWQRTDP-FVRDLFALSQDFSQLLQQPW 63
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T IT +F H H N I LYF G+ P+ L +Y+AG + G +F+++ +A
Sbjct: 64 TAITYSFFHASFIHCFFNAIMLYFVGILFMNLFTPKRFLGIYIAGVVAGGLFFMLTYAIF 123
Query: 227 AMSSKRQ-----------GMWVVDPSRTP---------------ALGVFLIGKDMLRIIE 260
+ + R+ + + + TP LGV ++ D+L I
Sbjct: 124 PVFAHREDYLLGGSAGIMAVLIFLTTYTPTLRIYLFGVWAVPLWVLGVLMVATDLLSIPI 183
Query: 261 GNSNISGSAHLGGAAVAAL 279
N+ AHLGGA V L
Sbjct: 184 SNAG-GHIAHLGGALVGIL 201
>gi|50307513|ref|XP_453736.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642870|emb|CAH00832.1| KLLA0D15224p [Kluyveromyces lactis]
Length = 343
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 5/104 (4%)
Query: 124 SEVVYGLIIANTAVFMLWRIADPKFMA--NNFTISLDNFLSGRLHTLITSAFSHIDVEHI 181
+ + Y +I N AVF LW++ P+F + + + + + +L+ SAFSH + H+
Sbjct: 139 THLPYAIIGINLAVFGLWQL--PRFWGPLQRYALLQKDHIYSKW-SLLGSAFSHQEFWHL 195
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
NMI L+ FG S+ LGP LY+ AI GS+F L Y F
Sbjct: 196 GMNMICLFSFGTSLVTMLGPGNFTSLYLNSAIAGSLFSLWYPRF 239
>gi|290996388|ref|XP_002680764.1| predicted protein [Naegleria gruberi]
gi|284094386|gb|EFC48020.1| predicted protein [Naegleria gruberi]
Length = 446
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 7/137 (5%)
Query: 118 LRQYGSSEVVYGLI---IANTAVFMLWRIADPK----FMANNFTISLDNFLSGRLHTLIT 170
++ Y + V++GL IA+ + ++ P+ F + T+SL+N R HTLIT
Sbjct: 155 IKDYYRAPVLWGLSAIHIASYTALVALQLKSPRRYARFFERHMTVSLNNLYEKRFHTLIT 214
Query: 171 SAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSS 230
S F+H + + ++++ + F G S+ L LL +Y AI G + +Y FL
Sbjct: 215 SIFAHKNALSLATSVLAINFVGCSLKEFLSDSTLLSIYFGSAILGVLAASMYGVFLVNYF 274
Query: 231 KRQGMWVVDPSRTPALG 247
+R M V T G
Sbjct: 275 RRNMMMRVQLIHTGKFG 291
>gi|404443258|ref|ZP_11008430.1| rhomboid family protein [Mycobacterium vaccae ATCC 25954]
gi|403655930|gb|EJZ10759.1| rhomboid family protein [Mycobacterium vaccae ATCC 25954]
Length = 289
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 55/107 (51%), Gaps = 4/107 (3%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM 185
V Y LI N +F L ++A P + + G L+ L+TSAF H V HI NM
Sbjct: 79 VTYVLIAVNLVMFAL-QMASPN-LERALGLWPPAAADGELYRLVTSAFLHFSVTHIAFNM 136
Query: 186 IGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS--VFYLVYHAFLAMSS 230
+ LYF G + LG + LY+ A+GGS V+ L ++A A +S
Sbjct: 137 LALYFVGPPLEHALGRLRFVALYLLSALGGSVLVYLLTFNALTAGAS 183
>gi|47216517|emb|CAG02168.1| unnamed protein product [Tetraodon nigroviridis]
Length = 352
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 74/184 (40%), Gaps = 28/184 (15%)
Query: 117 WLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHT-LITSAFSH 175
WL V G++ AN VF+ WR+ P + N S L T +I S+FSH
Sbjct: 138 WLSLTEGQRTVTGILAANALVFLCWRV--PALQPSMIRYFTSNPASKSLCTPMILSSFSH 195
Query: 176 IDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGG--------------SVFYLV 221
H+ +NM L+ F S LG E + +Y++ AI S+ +L
Sbjct: 196 FSFLHMAANMYVLWSFSTSAVSMLGREQFVAVYLSAAIMAVLAAVCTKMPEAKLSIIFLP 255
Query: 222 YHAFLA---MSSKRQG--MWVVDPSRTPALGV------FLIGKDMLRIIEGNSNISGSAH 270
F A SS G V DP R +L ++ D ++ G +AH
Sbjct: 256 MFTFTASNVRSSAPSGRLAGVCDPQRPSSLSPPPQALKAIVAMDAAGVVLGWRFFDHAAH 315
Query: 271 LGGA 274
LGGA
Sbjct: 316 LGGA 319
>gi|387219679|gb|AFJ69548.1| hypothetical protein NGATSA_3032200, partial [Nannochloropsis
gaditana CCMP526]
Length = 133
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 149 MANNFTISLDNFLS-GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKL 207
M NFT+S + GR+HTL T+ FSH H++ N + LYFFG LG L L
Sbjct: 1 MVENFTVSGVGVVEHGRIHTLFTAMFSHQSFTHLLVNCVTLYFFGAEAAVLLGARRFLNL 60
Query: 208 YMAGAIGGSV 217
Y AG + S+
Sbjct: 61 YFAGGLASSL 70
>gi|452837823|gb|EME39764.1| hypothetical protein DOTSEDRAFT_47325 [Dothistroma septosporum
NZE10]
Length = 201
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 33/45 (73%)
Query: 148 FMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFG 192
F+ +NF +S+D+ +GR HTL+T AFSH+++ H NM GL+ FG
Sbjct: 6 FLTDNFMLSVDSIKAGRYHTLLTCAFSHVELGHFAFNMFGLFTFG 50
>gi|254574090|ref|XP_002494154.1| Mitochondrial serine protease [Komagataella pastoris GS115]
gi|238033953|emb|CAY71975.1| Mitochondrial serine protease [Komagataella pastoris GS115]
gi|328354027|emb|CCA40424.1| rhomboid-like protein [Komagataella pastoris CBS 7435]
Length = 312
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
Query: 124 SEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVS 183
S +VY LI N AVF LW+ + + + + L+ ++I SAFSH D HI
Sbjct: 113 SLLVYSLIGINAAVFALWKAPQYWRVLSRYGL-LEKDARFNKWSMIGSAFSHQDFWHIGM 171
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSS 230
NM+ LY FG ++ +G L +Y+ GA+ S+ L Y +SS
Sbjct: 172 NMLALYSFGTTVASYVGASNFLIMYLNGAVLSSLASLAYPVLAGVSS 218
>gi|255037557|ref|YP_003088178.1| rhomboid family protein [Dyadobacter fermentans DSM 18053]
gi|254950313|gb|ACT95013.1| Rhomboid family protein [Dyadobacter fermentans DSM 18053]
Length = 304
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 13/121 (10%)
Query: 119 RQYGSSE-VVYGLIIANTAVFM---LWRIADPKFMANNFTISLDNFLS---------GRL 165
R++ SE + +I+ NTAVF+ L +I ++N + N L +
Sbjct: 10 REFAKSENALVKIILVNTAVFLILLLMKIVLTLSQSSNVYALVINMLQLPAATQEFIYKP 69
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
TLIT F+H D+ HI+ NM+ LY+FG + LG + ++ LY+ G I G + Y+V +
Sbjct: 70 WTLITYFFTHDDIFHILFNMLFLYWFGKLVDEYLGAKRVIALYLLGGIAGGLIYIVLYNL 129
Query: 226 L 226
L
Sbjct: 130 L 130
>gi|328541739|ref|YP_004301848.1| peptidase, S54 (Rhomboid) family [Polymorphum gilvum SL003B-26A1]
gi|326411491|gb|ADZ68554.1| Peptidase, S54 (Rhomboid) family, putative [Polymorphum gilvum
SL003B-26A1]
Length = 231
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 88/210 (41%), Gaps = 54/210 (25%)
Query: 126 VVYGLIIANTAVFMLWRIA---------------------DPKFMANNFTISLDNFLSGR 164
V + LI+AN A F+L + A D K +A + + N
Sbjct: 19 VTWSLILANCAAFLLLQGAGLGETAQASAYSYGLIPSVLFDIKDLAPDLAVVPGN----- 73
Query: 165 LHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL---- 220
TL+T AF H DV H+ NM+ L+ FG ++ LG L Y+A A+ G Y
Sbjct: 74 -ATLVTYAFLHADVWHLAGNMLFLWVFGDNVEDALGHLRYLLFYLACAVAGGFAYAALDP 132
Query: 221 ---------------VYHAFLAMSSKRQGMWVVDPSRTP-------ALGVFLIGKDMLRI 258
+ A+L + + + +WV+ R P ALG ++ + +
Sbjct: 133 NSDVPLIGASAAGAGIVAAYLILHPRVR-VWVLVLGRVPLPIPALWALGAWIAFQVFNVL 191
Query: 259 IEGNSNISGSAHLGGAAVAALAWARIRRRG 288
+S ++ SAH+GG A A+ +RRRG
Sbjct: 192 FVQDSQVAWSAHVGGIAAGAVLVVFLRRRG 221
>gi|262200065|ref|YP_003271273.1| rhomboid family protein [Gordonia bronchialis DSM 43247]
gi|262083412|gb|ACY19380.1| Rhomboid family protein [Gordonia bronchialis DSM 43247]
Length = 303
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 77/189 (40%), Gaps = 16/189 (8%)
Query: 111 RYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFL------SGR 164
R RW S + + V Y LI+ N VF L N + D L G
Sbjct: 65 RRRWSSAVAG-DTPYVTYALIVINLIVFGLCVAEAGITNPGNAALMSDGSLVKGIVGEGE 123
Query: 165 LHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA 224
L+T+ F H V H+ NMI LY G + R LG L +Y+ +GGS +++ A
Sbjct: 124 YWRLLTAGFLHFSVMHVAVNMISLYIIGRDLERALGTYRYLAVYLISLLGGSAAVMLFEA 183
Query: 225 FLAMSSKRQG---------MWVVDPSRTPALGVFLIGKDMLRIIEGNSNISGSAHLGGAA 275
++ G + +V +R PA V +I + + IS AHLGG A
Sbjct: 184 DNVQTAGASGAIYGLIGAMLVIVLKARVPATPVLVIIGFNVVLSVSLPGISLMAHLGGLA 243
Query: 276 VAALAWARI 284
A A I
Sbjct: 244 FGVAATAAI 252
>gi|392589747|gb|EIW79077.1| hypothetical protein CONPUDRAFT_145250 [Coniophora puteana
RWD-64-598 SS2]
Length = 443
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 116 SWLRQYGSSEVVYGLIIANTAVFMLWRIADPK-FMANNFTISLDNFLSGRLHTLITSAFS 174
+WL + V + L AN AV++LWR+ + FM+ +FT + LSGR +TL+TS FS
Sbjct: 165 AWLNAHEGRRVCWTLCAANAAVWVLWRVPRLQGFMSRSFT---HHPLSGRSYTLLTSVFS 221
Query: 175 HIDVEHIVSNMIGLYFFGMS 194
H H+ +N L FG +
Sbjct: 222 HKSFLHLAANSFALASFGTA 241
>gi|449685783|ref|XP_002168423.2| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like [Hydra magnipapillata]
Length = 307
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 66/151 (43%), Gaps = 19/151 (12%)
Query: 80 SLLSSQLRKSFFDGKVLFFRAQFPERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFM 139
S L+ + + + K L FR + E W W R +V +I NT VF+
Sbjct: 68 SKLTDKFSRGHGNNKALIFRNKLNE---------W--WNRLSYGQKVTVCIISLNTCVFL 116
Query: 140 LWRIADP-KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRT 198
W+I +FM N F S N R L+ S FSH + H +NM L+ F I
Sbjct: 117 CWKITPAHRFMKNWFLCSPTN---KRCSPLLLSVFSHSEAWHFFTNMFVLWSFSPLIQSV 173
Query: 199 LGPEYLLKLYMAGAIGGSVFYLVYHAFLAMS 229
LG E L Y+ GG+ L+ H FL +S
Sbjct: 174 LGTEQFLAFYLT---GGTFASLISH-FLKVS 200
>gi|115402097|ref|XP_001217125.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114188971|gb|EAU30671.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 562
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 3/110 (2%)
Query: 115 RSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKF-MANNFTISLDNFLSGRLHTLITSAF 173
R W ++ + +I N +F LWR+ P + + N + I++ + R +L+ + F
Sbjct: 341 RLWPSVPPAAATIMTIIGMNVGIFALWRLWPPAWRLLNRYFITVTAY--PRPLSLVGNVF 398
Query: 174 SHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
SH V H+ +NM L+ G + +G L LY+A + GS L+YH
Sbjct: 399 SHQTVRHLAANMFVLWVVGTKVHDEIGRGNFLALYLASGVFGSFTSLLYH 448
>gi|313677402|ref|YP_004055398.1| rhomboid family protein [Marivirga tractuosa DSM 4126]
gi|312944100|gb|ADR23290.1| Rhomboid family protein [Marivirga tractuosa DSM 4126]
Length = 302
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 56/102 (54%), Gaps = 4/102 (3%)
Query: 140 LWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTL 199
L+ I D +F L+ F+ R T+IT AFSH HI+ NM+ LY+FGM + + L
Sbjct: 48 LYAIVDAQF---TIPPDLERFIY-RPWTIITYAFSHAGFFHILMNMLVLYWFGMLVSQYL 103
Query: 200 GPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPS 241
G L+ LY+ GA+ G+V +++ + + + R +V S
Sbjct: 104 GSAKLVNLYVLGALAGAVIFILAYNLIPFLADRTTSGMVGAS 145
>gi|448122960|ref|XP_004204574.1| Piso0_000427 [Millerozyma farinosa CBS 7064]
gi|448125226|ref|XP_004205132.1| Piso0_000427 [Millerozyma farinosa CBS 7064]
gi|358249765|emb|CCE72831.1| Piso0_000427 [Millerozyma farinosa CBS 7064]
gi|358350113|emb|CCE73392.1| Piso0_000427 [Millerozyma farinosa CBS 7064]
Length = 335
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Query: 125 EVVYGLIIANTAVFMLWRIAD-PKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVS 183
+VYG+I N AVF +WR+ +F+ +S D S +++ SAFSH H+
Sbjct: 138 AIVYGIIAINCAVFGMWRLPQFSRFLMRYGLLSKDGMYSA--WSMLGSAFSHQSFSHLFV 195
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
NM L+ FG SI +G L L++ A+ S +VY
Sbjct: 196 NMFVLHSFGTSICAMIGAANFLTLFLNSAVVSSFVSIVY 234
>gi|440893528|gb|ELR46263.1| Presenilins-associated rhomboid-like protein, mitochondrial [Bos
grunniens mutus]
Length = 355
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 84/198 (42%), Gaps = 20/198 (10%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 127 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVFVFCLWRVPS 185
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 186 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 242
Query: 204 LLKLYM-AGAIGGSVFYLV------YHAFLAMSSKRQGMWVVDPSRTPALGVFLIGKDML 256
+ +Y+ AG I V Y+ Y L S + ++ P + +I M
Sbjct: 243 FMAVYLSAGVISNFVSYVCKVATGRYGPSLGASGAIMTVLAAVCTKIPEGRLAIIFLPMF 302
Query: 257 RIIEGNSNISGSAHLGGA 274
GN HLGGA
Sbjct: 303 TFTAGNVT-----HLGGA 315
>gi|402860811|ref|XP_003894813.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial [Papio anubis]
Length = 420
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 66/138 (47%), Gaps = 9/138 (6%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 129 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVLVFCLWRVPS 187
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 188 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 244
Query: 204 LLKLYM-AGAIGGSVFYL 220
+ LY+ AG I V Y+
Sbjct: 245 FMALYLSAGVISNFVSYV 262
>gi|223935890|ref|ZP_03627805.1| Rhomboid family protein [bacterium Ellin514]
gi|223895491|gb|EEF61937.1| Rhomboid family protein [bacterium Ellin514]
Length = 282
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 57/134 (42%), Gaps = 23/134 (17%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL----- 220
H L+TSAF H + H+ NM GLY FG I GP L +Y AG IGG + L
Sbjct: 47 HRLVTSAFLHANWRHLFFNMFGLYAFGRLIESIHGPLMFLSIYFAGIIGGDLLALWLHRN 106
Query: 221 -VYHAFLAMSSKRQGMWVVDPSRTPALGV----------------FLIGKDMLRIIEGNS 263
Y A+ A S G+ P +GV + + I+G
Sbjct: 107 HEYRAYGA-SGGVCGIVFAAIFLFPGIGVSMMFIPISIPGWLYVVIFLTSEFHGTIKGKD 165
Query: 264 NISGSAHLGGAAVA 277
N+ AHLGGA ++
Sbjct: 166 NVGHDAHLGGAIIS 179
>gi|403270005|ref|XP_003926990.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial [Saimiri boliviensis boliviensis]
Length = 379
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 90/214 (42%), Gaps = 30/214 (14%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 129 QSYFDGIKADWLDSIRPQKK-GDFRKEINKWWNHLSDGQRTVTGIIAANVLVFCLWRVPS 187
Query: 146 PK-FMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYL 204
K M FT S + + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 188 LKRTMTRYFTSSPASKV--LCSPMLLSTFSHFSLIHMAANMYVLWSFSSSIVNLLGQEQF 245
Query: 205 LKLYM-AGAIGGSVFYLV------YHAFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLR 257
+ +Y+ AG I V Y+ Y L S + ++ P + +I ML
Sbjct: 246 MAVYLSAGVISNFVSYVCKVATGRYGPSLGASGAIMTVLAAVCTKMPEGRLAIIFLPMLT 305
Query: 258 IIEGNS-------NISG----------SAHLGGA 274
GN+ + +G +AHLGGA
Sbjct: 306 FTAGNALKAIIAMDTAGLILGWKVFDHAAHLGGA 339
>gi|296224680|ref|XP_002758155.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like isoform 1 [Callithrix jacchus]
Length = 379
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 66/139 (47%), Gaps = 9/139 (6%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 129 QSYFDGIKADWLDSIRPQKK-GDFRKEINKWWNNLSDGQRTVTGIIAANVLVFCLWRVPS 187
Query: 146 PK-FMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
K M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 188 LKRTMTRYFT---SNPASKVLCSPMLLSTFSHFSLIHMAANMYVLWSFSSSIVNLLGQEQ 244
Query: 204 LLKLYM-AGAIGGSVFYLV 221
+ +Y+ AG I V Y+
Sbjct: 245 FMAMYLSAGVISNFVSYVC 263
>gi|348682858|gb|EGZ22674.1| hypothetical protein PHYSODRAFT_492126 [Phytophthora sojae]
Length = 349
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 15/140 (10%)
Query: 59 SLSLKTHAFLFNPLLARRFFTSLLSSQLRKSFFDGKVLFFRAQFPERSFASFRYRWRSWL 118
++ L + + LL ++ + +R + D + LF+R R F W
Sbjct: 65 TMGLVSGGIIATSLLHKQEESGDFKGLIRNLYGDAEDLFYRGN--GRQFDD------PWF 116
Query: 119 RQYGSSEVVYGLIIANTAVFMLWRIA-----DPKFMANNFTISLDNFLSG-RLHTLITSA 172
+ + V +I ANT VF LWR++ +FM +F S D + G R HTL+TSA
Sbjct: 117 ED-NNKKAVASIIAANTLVFGLWRVSFRNARLHQFMWRHFASSYDAVVYGKRFHTLLTSA 175
Query: 173 FSHIDVEHIVSNMIGLYFFG 192
FSHI H NM L+ FG
Sbjct: 176 FSHITFPHFGINMFMLWEFG 195
>gi|333025703|ref|ZP_08453767.1| putative rhomboid family protein [Streptomyces sp. Tu6071]
gi|332745555|gb|EGJ75996.1| putative rhomboid family protein [Streptomyces sp. Tu6071]
Length = 341
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 79/177 (44%), Gaps = 27/177 (15%)
Query: 130 LIIANTAVFMLWR-IADPKFMANNFTI-----------SLDNFLSGRLHTLITSAFSHID 177
LI N AVF+L + + D + + ++ + L G + L+T+AF H +
Sbjct: 131 LIALNLAVFLLVQAVPDQQRLLDDLEMLGRALPYYGADHLVGVAEGEWYRLLTAAFLHQE 190
Query: 178 VEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQG--- 234
+ HI NM+ L+F G +I LG L LY+ A+GGSV ++ A A S G
Sbjct: 191 IWHIAVNMLSLWFLGPAIESMLGRARFLALYLIAAVGGSVASYLFAAPNAASLGASGAIF 250
Query: 235 ---------MWVVDPSRTPALGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWA 282
+ V P + + +I L I G SNI+ AH+GG V L A
Sbjct: 251 GLFGATGILVLRVRADVRPFVALLVIN---LIITFGWSNIAWQAHIGGLVVGVLVAA 304
>gi|62122777|ref|NP_001014320.1| presenilins-associated rhomboid-like protein, mitochondrial
precursor [Danio rerio]
gi|82178438|sp|Q58EK4.1|PARL_DANRE RecName: Full=Presenilins-associated rhomboid-like protein,
mitochondrial; Flags: Precursor
gi|61402545|gb|AAH91865.1| Zgc:112986 [Danio rerio]
gi|182889200|gb|AAI64781.1| Zgc:112986 protein [Danio rerio]
Length = 383
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 125 EVVYGLIIANTAVFMLWRI-ADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVS 183
+ V G+I NT V WR+ A +F+ FT + + R ++ S+FSH V H+V
Sbjct: 168 KTVTGIIALNTVVLCCWRVPAMQRFLVKYFTSNPAS--KTRCLPMVLSSFSHYSVIHMVV 225
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAI 213
NM L+ F SI LG E L LY++G +
Sbjct: 226 NMYVLWTFSSSIVSLLGREQFLALYLSGGV 255
>gi|160900746|ref|YP_001566328.1| rhomboid family protein [Delftia acidovorans SPH-1]
gi|160366330|gb|ABX37943.1| Rhomboid family protein [Delftia acidovorans SPH-1]
Length = 496
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 33/52 (63%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
T IT+AF H+D H+V NM+ L+ FG S+ LG L Y+ GA+GGSV
Sbjct: 152 TWITAAFLHVDTSHLVGNMLFLFMFGFSVELMLGRGTYLLFYLLGAVGGSVL 203
>gi|318057482|ref|ZP_07976205.1| hypothetical protein SSA3_06048 [Streptomyces sp. SA3_actG]
Length = 341
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 79/177 (44%), Gaps = 27/177 (15%)
Query: 130 LIIANTAVFMLWR-IADPKFMANNFTI-----------SLDNFLSGRLHTLITSAFSHID 177
LI N AVF+L + + D + + ++ + L G + L+T+AF H +
Sbjct: 131 LIALNLAVFLLVQAVPDQQRLLDDLEMLGRALPYYGADHLVGVAEGEWYRLLTAAFLHQE 190
Query: 178 VEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQG--- 234
+ HI NM+ L+F G +I LG L LY+ A+GGSV ++ A A S G
Sbjct: 191 IWHIAVNMLSLWFLGPAIESMLGRARFLALYLIAAVGGSVASYLFAAPNAASLGASGAIF 250
Query: 235 ---------MWVVDPSRTPALGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWA 282
+ V P + + +I L I G SNI+ AH+GG V L A
Sbjct: 251 GLFGATGILVLRVRADVRPFVALLVIN---LIITFGWSNIAWQAHIGGLVVGVLVAA 304
>gi|315446599|ref|YP_004079478.1| hypothetical protein Mspyr1_51170 [Mycobacterium gilvum Spyr1]
gi|315264902|gb|ADU01644.1| uncharacterized membrane protein [Mycobacterium gilvum Spyr1]
Length = 279
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 76/170 (44%), Gaps = 15/170 (8%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM 185
V Y LI N F L ++A P + F + G ++ L+TSAF H + H+ NM
Sbjct: 69 VTYALIGINLLAFAL-QMASPG-LQRAFGLWSPAVADGEMYRLLTSAFLHFGLTHLAFNM 126
Query: 186 IGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS--VFYLVYHAFLAMSSKR-----QGMWVV 238
+ LYF G + LG + LY+ A+GGS V+ L ++A A +S +VV
Sbjct: 127 LALYFVGPPLEAALGRARFVTLYLVSALGGSVLVYLLTFNALTAGASGAVFGLFGATFVV 186
Query: 239 ------DPSRTPALGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWA 282
D A+ V + L + + NIS H+GG AL A
Sbjct: 187 GRKLNMDVRSVMAIIVLNLAFTFLIPLFTSQNISWQGHIGGLVTGALVAA 236
>gi|408785632|ref|ZP_11197375.1| hypothetical protein C241_04762 [Rhizobium lupini HPC(L)]
gi|424912365|ref|ZP_18335742.1| putative membrane protein [Rhizobium leguminosarum bv. viciae USDA
2370]
gi|392848396|gb|EJB00919.1| putative membrane protein [Rhizobium leguminosarum bv. viciae USDA
2370]
gi|408488527|gb|EKJ96838.1| hypothetical protein C241_04762 [Rhizobium lupini HPC(L)]
Length = 257
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 69/151 (45%), Gaps = 33/151 (21%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T IT AF H+D H+ NM+ L+ FG ++ LG L Y+A AI G++F H F+
Sbjct: 75 TAITYAFLHLDFWHLAGNMLFLWVFGDNVEDALGHFRFLIFYLACAIAGALF----HGFV 130
Query: 227 AMSSK----------------------RQGMWVVDPSRTP-ALGVFL-----IGKDMLRI 258
A +S+ + +WV+ R P L F+ IG+ L +
Sbjct: 131 APTSEGPLIGASGAVSGVVAAYFLLHPKVRVWVLVLMRIPLPLPAFIPLALWIGQQFLML 190
Query: 259 IEG-NSNISGSAHLGGAAVAALAWARIRRRG 288
G N+S AH+GG A+ +RRRG
Sbjct: 191 ALGLEENVSWGAHVGGILAGAIMVIFMRRRG 221
>gi|301098061|ref|XP_002898124.1| serine protease family S54, putative [Phytophthora infestans T30-4]
gi|262105485|gb|EEY63537.1| serine protease family S54, putative [Phytophthora infestans T30-4]
Length = 344
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 66/146 (45%), Gaps = 21/146 (14%)
Query: 59 SLSLKTHAFLFNPLLARRFFTSLLSSQLRKSFFDGKVLFFRA---QFPERSFASFRYRWR 115
SL L + + ++ ++ + +R + D LF+ + QF E
Sbjct: 60 SLGLVSGGIIVTSVVNKQEEDTDFKEAIRNLYGDANDLFYSSNGRQFGE----------- 108
Query: 116 SWLRQYGSSEVVYGLIIANTAVFMLWRIA-----DPKFMANNFTISLDNFLSG-RLHTLI 169
SW + + V LI ANT VF LWR + +FM +F S D + G R HTL+
Sbjct: 109 SWYEDT-NKKAVAALIAANTLVFGLWRASFRNARLHQFMWRHFASSYDAVVYGKRFHTLL 167
Query: 170 TSAFSHIDVEHIVSNMIGLYFFGMSI 195
TSAFSHI H NM L+ FG I
Sbjct: 168 TSAFSHITFPHFGINMFMLWEFGPHI 193
>gi|398343437|ref|ZP_10528140.1| intramembrane serine protease [Leptospira inadai serovar Lyme str.
10]
Length = 199
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 130 LIIANTAVFMLWRI-ADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGL 188
+ I TA F L+ + +P+ + + GR +TLITSAF H D+ H++ NMI L
Sbjct: 5 ITIGITAAFSLYALMGNPELLEKFLLRPFRDSRQGRYYTLITSAFLHSDIFHLMFNMITL 64
Query: 189 YFFGMSIGRTLGPEYLLKLYMAGAIGGS 216
YFFG ++ T+G + +Y+A + S
Sbjct: 65 YFFGPAVEYTIGGLGFVGIYLAAILAAS 92
>gi|308050685|ref|YP_003914251.1| rhomboid family protein [Ferrimonas balearica DSM 9799]
gi|307632875|gb|ADN77177.1| Rhomboid family protein [Ferrimonas balearica DSM 9799]
Length = 348
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 87/187 (46%), Gaps = 33/187 (17%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMA---NNFTISLDNFLSGR-LHTLITSAFSHIDVEHI 181
+VY LI+ N A F L +A P +M +N T+ D ++G+ L +L+T+ F H V H+
Sbjct: 141 LVYLLILINVAQFGL-ELAYPNWMQWTYDNLTLRPDQVMAGQQLWSLLTNMFIHGSVAHL 199
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV----------------------FY 219
+ NM LY G ++ LG L +Y+A + G V +
Sbjct: 200 LGNMYFLYVVGDNLEDVLGRWRFLAIYLACGLVGGVAQVLSDPGSDIPILGASGAVAGLF 259
Query: 220 LVYHAFLAMSSKRQGMWVVDPSRTPA--LGVFLIGKDMLRIIEGNSNISGSAHLGG---A 274
+Y + +S +W+ +PA G++L+ +++ +++ ++ AH+GG
Sbjct: 260 GMYLMWFRHASLTFMLWIFQKKLSPAWFFGIWLV-INVIGVVQQGEGVAYWAHIGGFISG 318
Query: 275 AVAALAW 281
V +AW
Sbjct: 319 LVVGIAW 325
>gi|295674543|ref|XP_002797817.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280467|gb|EEH36033.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 576
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADPKF-MANNFTISLDNFLSGRLHTLITSAFSHIDVEHI 181
++ V GLI AN +F LWR P + M N + IS+ L +++ S FSH +H+
Sbjct: 354 AAATVIGLIGANFLIFALWRGFPPSWRMLNRYFISVP--LYPHSISVVGSVFSHQQFQHL 411
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+NM+ L+F G I + LG L LY++ + S+ L H
Sbjct: 412 AANMLILWFVGTRIHQELGRGDFLSLYLSSGVFASLTSLTVHVL 455
>gi|387763188|ref|NP_001248478.1| presenilins-associated rhomboid-like protein, mitochondrial [Macaca
mulatta]
gi|90083314|dbj|BAE90739.1| unnamed protein product [Macaca fascicularis]
gi|380789625|gb|AFE66688.1| presenilins-associated rhomboid-like protein, mitochondrial isoform
1 preproprotein [Macaca mulatta]
gi|383419761|gb|AFH33094.1| presenilins-associated rhomboid-like protein, mitochondrial isoform
1 preproprotein [Macaca mulatta]
gi|384944096|gb|AFI35653.1| presenilins-associated rhomboid-like protein, mitochondrial isoform
1 preproprotein [Macaca mulatta]
Length = 379
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 66/138 (47%), Gaps = 9/138 (6%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 129 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVLVFCLWRVPS 187
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 188 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 244
Query: 204 LLKLYM-AGAIGGSVFYL 220
+ LY+ AG I V Y+
Sbjct: 245 FMALYLSAGVISNFVSYV 262
>gi|348668511|gb|EGZ08335.1| hypothetical protein PHYSODRAFT_434799 [Phytophthora sojae]
Length = 87
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAI 213
+TL+T+ FS + + H+ +NM+GLYFFG I LGP L LY+ G +
Sbjct: 2 YTLLTAMFSQMSLGHLGANMLGLYFFGRQIAEVLGPRRFLYLYLVGGV 49
>gi|11066250|gb|AAG28519.1|AF197937_1 presenilins associated rhomboid-like protein [Homo sapiens]
Length = 379
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 66/138 (47%), Gaps = 9/138 (6%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 129 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVLVFCLWRVPS 187
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 188 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 244
Query: 204 LLKLYM-AGAIGGSVFYL 220
+ +Y+ AG I V YL
Sbjct: 245 FMAVYLSAGVISNFVSYL 262
>gi|425737376|ref|ZP_18855649.1| hypothetical protein C273_03260 [Staphylococcus massiliensis S46]
gi|425482724|gb|EKU49880.1| hypothetical protein C273_03260 [Staphylococcus massiliensis S46]
Length = 484
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Query: 124 SEVVYGLIIANTAVFMLWRIADPKFMANNFTISLD-----NFLSGRLHTLITSAFSHIDV 178
S + YGLI+ N ++ L I + I L N + G H LITS F H++
Sbjct: 156 SPITYGLILLNVIIWALINILHHNEFTDLKLIDLGALAHFNVVHGEWHRLITSMFLHLNF 215
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
EHI+ NM+ L+ FG + LG + +YM I G++ L +
Sbjct: 216 EHILFNMLSLFIFGKLLESILGSWRMFGVYMLSGIIGNLVTLAF 259
>gi|410970908|ref|XP_004001528.1| PREDICTED: LOW QUALITY PROTEIN: presenilins-associated
rhomboid-like protein, mitochondrial [Felis catus]
Length = 379
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 9/139 (6%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 129 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVXVFCLWRVPS 187
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 188 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 244
Query: 204 LLKLYM-AGAIGGSVFYLV 221
+ +Y+ AG I V Y+
Sbjct: 245 FMAVYLSAGVISNFVSYVC 263
>gi|402080617|gb|EJT75762.1| hypothetical protein GGTG_05692 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 323
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 20/117 (17%)
Query: 126 VVYGLIIANTAVFMLWRIADPK-------------------FMANNFTISLDNFLSGRLH 166
VV G+ AN AV+ W +A + +M NF +S +N L GR
Sbjct: 98 VVLGVAGANVAVYYWWWLARREGPHNSPWSTRWSRTTEKLDWMRENFVLSAENVLQGRWW 157
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFG-MSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
TL+TSAFSH D H+ NM+ +F M++ G L L + A+ S L++
Sbjct: 158 TLLTSAFSHYDTVHLAVNMMVFHFSATMALELGFGAARLAFLSLGSALTASAASLLH 214
>gi|440750147|ref|ZP_20929391.1| Rhomboid family protein [Mariniradius saccharolyticus AK6]
gi|436481188|gb|ELP37369.1| Rhomboid family protein [Mariniradius saccharolyticus AK6]
Length = 263
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 16/101 (15%)
Query: 126 VVYGLIIAN-TAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
VV ++ N +A+F L+ I P+F+ F +T F H D H+ SN
Sbjct: 21 VVATYVMPNLSAIFALYHIQSPRFIPTQF---------------LTYMFMHADGWHLFSN 65
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
M GL+ FG + +GP+ LL L+M +G V Y Y +F
Sbjct: 66 MFGLFVFGPLLEEFIGPKKLLTLWMVCGVGAGVLYSGYTSF 106
>gi|145239077|ref|XP_001392185.1| rhomboid family protein [Aspergillus niger CBS 513.88]
gi|134076688|emb|CAK45219.1| unnamed protein product [Aspergillus niger]
Length = 581
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Query: 115 RSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFS 174
R W S+ V +I NTA+F LW + N + IS+ + + L+ + FS
Sbjct: 358 RLWPNIPRSAATVGTIIGINTAIFALWWFPPCWRLFNRYLISIPANPNPPVR-LLGNIFS 416
Query: 175 HIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
H +H++SNM+ L+F G + +G L LY+A + GS L H +A
Sbjct: 417 HQYPKHLISNMLFLWFIGTKLHDEIGRGEFLSLYIASGVVGSFVTLTAHCLMA 469
>gi|281424725|ref|ZP_06255638.1| rhomboid family protein [Prevotella oris F0302]
gi|281401095|gb|EFB31926.1| rhomboid family protein [Prevotella oris F0302]
Length = 319
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDN------FLSGRLH--TLITSAFSHIDVEHI 181
LI+ A M+W FM I L+N FL+ H L+T F H ++EHI
Sbjct: 12 LIVNVVAFLMMWIFQGMNFMGGG-PIDLNNIFGLHFFLASDFHFYQLVTYMFMHANLEHI 70
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
NM L+ FGM + GP L Y+ IG VF
Sbjct: 71 FFNMFALWMFGMVVENVWGPRKFLFYYILCGIGAGVF 107
>gi|384252113|gb|EIE25590.1| rhomboid-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 283
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 74/181 (40%), Gaps = 26/181 (14%)
Query: 119 RQYGSSEVVYGLIIANTAVFMLWRI-ADPKFMANNFTISLDNFLSGRLHTLITSAFSHID 177
R+ + V+Y +I AN V +LWRI A FM N + L L R T +TS FSH
Sbjct: 3 RKQDTKRVLYSIIAANVGVSLLWRIPALQGFMLRNAVLQLPP-LRTRPWTFLTSNFSHAG 61
Query: 178 VEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF-YL---------------- 220
H+ NM+ L FG + G + Y++ + S+ YL
Sbjct: 62 TLHLAVNMLALSSFGSVVAEDFGAYHFAAFYLSAGLASSMTAYLARLRRGSGGRSLGASG 121
Query: 221 -VYHAFLA---MSSKRQGMWVVDPSRTPALGV---FLIGKDMLRIIEGNSNISGSAHLGG 273
VY F A M QG ++ P LG L+ D ++ G + HLGG
Sbjct: 122 AVYACFAATALMHPDAQGAFIFLPGIPIRLGDLLPLLMCFDAAGVLLGWRYLDHFGHLGG 181
Query: 274 A 274
A
Sbjct: 182 A 182
>gi|440470952|gb|ELQ39991.1| phosphatidylinositol phospholipase C [Magnaporthe oryzae Y34]
gi|440488279|gb|ELQ68010.1| phosphatidylinositol phospholipase C [Magnaporthe oryzae P131]
Length = 709
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 143 IADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYF-FGMSIGRTLGP 201
I+ K+M NFT+S N GR TLITSAFSH D H++ NM+ L F ++ LGP
Sbjct: 127 ISQLKWMLENFTLSRKNIEEGRWWTLITSAFSHKDPFHLLFNMLSLRFGVEAALHTGLGP 186
Query: 202 EYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGM 235
+L L A+ S L A + R G+
Sbjct: 187 LRVLLLATGAALSSSYASLWDGATRKHGADRAGL 220
>gi|403214049|emb|CCK68550.1| hypothetical protein KNAG_0B01030 [Kazachstania naganishii CBS
8797]
Length = 374
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
E VY L+ N A+F LW++ + + L S ++I SAFSH + H+ N
Sbjct: 172 EFVYTLLGINIAIFGLWQLPRCWNFLQRYML-LQKGHSSSSWSIIGSAFSHQEFWHLGMN 230
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
M+ L+ FG S+ LG LYM AIGGS+F L Y
Sbjct: 231 MLALWSFGTSLATMLGTSNFFSLYMNSAIGGSLFSLWY 268
>gi|119496153|ref|XP_001264850.1| rhomboid family protein, putative [Neosartorya fischeri NRRL 181]
gi|119413012|gb|EAW22953.1| rhomboid family protein, putative [Neosartorya fischeri NRRL 181]
Length = 568
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Query: 115 RSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFS 174
R W ++ + ++ AN +F+LW+ M N + IS+ F L +++ + FS
Sbjct: 349 RLWPDMPPAAATAFAIMGANLTIFLLWKFPPAWRMLNRYFISVP-FKPHPL-SIVGNVFS 406
Query: 175 HIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
H +H++ NM+ L+F G + +G L LYMA GS+ L H +
Sbjct: 407 HQQFKHMLLNMLMLWFIGTKLHDDIGRGNFLGLYMAAGAFGSMLSLTGHVLM 458
>gi|171914466|ref|ZP_02929936.1| Rhomboid family protein [Verrucomicrobium spinosum DSM 4136]
Length = 323
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 82/188 (43%), Gaps = 45/188 (23%)
Query: 130 LIIANTAVFMLWRIADPKF---MANNFT-------ISLDNFLSGRLHTLITSAFSHIDVE 179
L+I N AVF+L M + T SL L GR+ TL+T F H ++
Sbjct: 28 LVIINVAVFVLQVFGVGSSVVVMPDGTTDWQPWGAFSLQALLQGRVWTLVTHMFVHGNLF 87
Query: 180 HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY-------HAFLAMSSKR 232
H+V N + L+F G + +GP Y L +Y +GG+ ++ HA + S+
Sbjct: 88 HLVCNCLMLFFSGKGLQSLVGPRYFLYIYFIAGLGGAFLEVLVGWMAGQQHAVIGASAAV 147
Query: 233 QGMWV-----------------VDPSR----TPALGVFLIGK-----DMLRIIEGNSNIS 266
G++V + P R T AL V + +MLR+I ++ ++
Sbjct: 148 IGVFVAMAVMLPQEVVTAMISLIIPVRVRMWTLALVVMGVSAVLGVLEMLRVI--DTGVA 205
Query: 267 GSAHLGGA 274
AHLGGA
Sbjct: 206 HFAHLGGA 213
>gi|389628520|ref|XP_003711913.1| hypothetical protein MGG_13226 [Magnaporthe oryzae 70-15]
gi|351644245|gb|EHA52106.1| hypothetical protein MGG_13226 [Magnaporthe oryzae 70-15]
Length = 324
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 74/180 (41%), Gaps = 37/180 (20%)
Query: 143 IADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYF-FGMSIGRTLGP 201
I+ K+M NFT+S N GR TLITSAFSH D H++ NM+ L F ++ LGP
Sbjct: 127 ISQLKWMLENFTLSRKNIEEGRWWTLITSAFSHKDPFHLLFNMLSLRFGVEAALHTGLGP 186
Query: 202 EYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQG-------------------------MW 236
+L L A+ S L A + R G M+
Sbjct: 187 LRVLLLATGAALSSSYASLWDGATRKHGADRAGLGASGIVQGFLAAMALTRPWMQVSLMF 246
Query: 237 VVDPSRTPALGVFLIGKDM--LRIIEGNSN---ISGS-----AHLGGAAVAALAW-ARIR 285
+ P P + D L I N + SGS AHLGG+A AL W R+R
Sbjct: 247 IPIPVSLPIVWGLFTAWDFYNLHIARQNGDSPSASGSVVGYAAHLGGSAFGALYWFVRLR 306
>gi|318080696|ref|ZP_07988028.1| hypothetical protein SSA3_29396 [Streptomyces sp. SA3_actF]
Length = 248
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 78/174 (44%), Gaps = 27/174 (15%)
Query: 130 LIIANTAVFMLWR-IADPKFMANNFTI-----------SLDNFLSGRLHTLITSAFSHID 177
LI N AVF+L + + D + + ++ + L G + L+T+AF H +
Sbjct: 38 LIALNLAVFLLVQAVPDQQRLLDDLEMLGRALPYYGADHLVGVAEGEWYRLLTAAFLHQE 97
Query: 178 VEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQG--- 234
+ HI NM+ L+F G +I LG L LY+ A+GGSV ++ A A S G
Sbjct: 98 IWHIAVNMLSLWFLGPAIESMLGRARFLALYLIAAVGGSVASYLFAAPNAASLGASGAIF 157
Query: 235 ---------MWVVDPSRTPALGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAAL 279
+ V P + + +I L I G SNI+ AH+GG V L
Sbjct: 158 GLFGATGILVLRVRADVRPFVALLVIN---LIITFGWSNIAWQAHIGGLVVGVL 208
>gi|344282589|ref|XP_003413056.1| PREDICTED: LOW QUALITY PROTEIN: presenilins-associated
rhomboid-like protein, mitochondrial-like [Loxodonta
africana]
Length = 519
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 9/139 (6%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN V LWR+
Sbjct: 129 QSYFDGLKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVIVCCLWRVPS 187
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 188 LQRTMVRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 244
Query: 204 LLKLYM-AGAIGGSVFYLV 221
+ +Y+ AG I V Y+
Sbjct: 245 FMAVYLSAGVISNFVSYMC 263
>gi|358370941|dbj|GAA87551.1| rhomboid family protein [Aspergillus kawachii IFO 4308]
Length = 581
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Query: 115 RSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFS 174
R W S+ V +I N A+F LW + N + IS+ + L L+ + FS
Sbjct: 358 RLWPNIPRSAATVGTIIGINMAIFALWWFPPCWRLFNRYLISIPANPNPPLR-LLGNIFS 416
Query: 175 HIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
H +H++SNM+ L+F G + +G L LY+A + GS L H +A
Sbjct: 417 HQYPKHLISNMVFLWFIGTKLHDEIGRGEFLSLYIASGVVGSFVTLTAHCLMA 469
>gi|317140969|ref|XP_001818512.2| rhomboid family protein [Aspergillus oryzae RIB40]
gi|391869875|gb|EIT79065.1| integral membrane protease of the rhomboid family [Aspergillus
oryzae 3.042]
Length = 564
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 115 RSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKF-MANNFTISLDNFLSGRLHTLITSAF 173
R W ++ V +I N VF+LW++ P + + N I++ + R +LI + F
Sbjct: 345 RLWPDVPPAAATVMAIIGTNVGVFLLWKLCPPAWRLLNRHFITVAAY--PRPLSLIGNVF 402
Query: 174 SHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS 216
SH V H+ NM+ L+F G + +G L LY+A + GS
Sbjct: 403 SHQTVNHLALNMVVLWFVGTRLHDEIGRGNFLALYLASGVFGS 445
>gi|301759795|ref|XP_002915746.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like isoform 1 [Ailuropoda melanoleuca]
gi|281354055|gb|EFB29639.1| hypothetical protein PANDA_003760 [Ailuropoda melanoleuca]
Length = 379
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 65/138 (47%), Gaps = 7/138 (5%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 129 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVFVFCLWRVPS 187
Query: 146 -PKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYL 204
+ M FT S + + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 188 LQRTMIRYFTSSPASKV--LCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQF 245
Query: 205 LKLYM-AGAIGGSVFYLV 221
+ +Y+ AG I V Y+
Sbjct: 246 MAVYLSAGVISNFVSYVC 263
>gi|426217826|ref|XP_004003153.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial isoform 1 [Ovis aries]
Length = 377
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 9/139 (6%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 127 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVFVFCLWRVPS 185
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 186 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 242
Query: 204 LLKLYM-AGAIGGSVFYLV 221
+ +Y+ AG I V Y+
Sbjct: 243 FMAVYLSAGVISNFVSYVC 261
>gi|417399931|gb|JAA46946.1| Putative presenilin associated rhomboid-like isoform 2 [Desmodus
rotundus]
Length = 379
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 9/139 (6%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 129 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVFVFCLWRVPS 187
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 188 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 244
Query: 204 LLKLYM-AGAIGGSVFYLV 221
+ +Y+ AG I V Y+
Sbjct: 245 FMAVYLSAGVISNFVSYVC 263
>gi|327350805|gb|EGE79662.1| rhomboid family protein [Ajellomyces dermatitidis ATCC 18188]
Length = 583
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADPKF-MANNFTISLDNFLSGRLHTLITSAFSHIDVEHI 181
++ V GLI AN +F +WR P + M N + IS+ L +++ S FSH H+
Sbjct: 363 AAATVIGLIGANVLIFAMWRAVPPAWRMLNRYFISVP--LYPYSISIVGSIFSHQQFRHL 420
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+NM+ L+F G + LG L LY + + S+ L H
Sbjct: 421 GANMLILWFIGTRLHEELGRADFLSLYFSAGVIASLTSLTAHVL 464
>gi|83766367|dbj|BAE56510.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 551
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 115 RSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKF-MANNFTISLDNFLSGRLHTLITSAF 173
R W ++ V +I N VF+LW++ P + + N I++ + R +LI + F
Sbjct: 332 RLWPDVPPAAATVMAIIGTNVGVFLLWKLCPPAWRLLNRHFITVAAY--PRPLSLIGNVF 389
Query: 174 SHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS 216
SH V H+ NM+ L+F G + +G L LY+A + GS
Sbjct: 390 SHQTVNHLALNMVVLWFVGTRLHDEIGRGNFLALYLASGVFGS 432
>gi|395536467|ref|XP_003770237.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial [Sarcophilus harrisii]
Length = 392
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 65/137 (47%), Gaps = 7/137 (5%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FD K + + P++ FR + W + V G+I AN VF LWR+
Sbjct: 142 QSYFDAVKADWLDSLSPQKE-GEFRKQVNKWWNTLSDGQRTVTGIIAANVFVFCLWRV-- 198
Query: 146 PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYL 204
P + N S L T ++ S FSH + H+++NM L+ F SI LG E
Sbjct: 199 PSLQRSMIKYFTSNPASKALCTPMLLSTFSHFSLLHMMANMYVLWSFSTSIVSILGKEQF 258
Query: 205 LKLYM-AGAIGGSVFYL 220
+ +Y+ AG I V Y+
Sbjct: 259 VAVYLSAGVISTFVSYV 275
>gi|239609879|gb|EEQ86866.1| rhomboid family protein [Ajellomyces dermatitidis ER-3]
Length = 570
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADPKF-MANNFTISLDNFLSGRLHTLITSAFSHIDVEHI 181
++ V GLI AN +F +WR P + M N + IS+ + +++ S FSH H+
Sbjct: 350 AAATVIGLIGANVLIFAMWRAVPPAWRMLNRYFISVPLYPYS--ISIVGSIFSHQQFRHL 407
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+NM+ L+F G + LG L LY + + S+ L H
Sbjct: 408 GANMLILWFIGTRLHEELGRADFLSLYFSAGVIASLTSLTAHVL 451
>gi|436833411|ref|YP_007318627.1| Rhomboid family protein [Fibrella aestuarina BUZ 2]
gi|384064824|emb|CCG98034.1| Rhomboid family protein [Fibrella aestuarina BUZ 2]
Length = 306
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T++T +F+H D HI+ NM+ LY+FG I LG L+ LY+ GA+GG + Y V + +
Sbjct: 71 TVLTYSFTHYDPFHILWNMVFLYWFGRLIEEYLGSRRLVGLYIMGALGGGLCYFVAYNLV 130
Query: 227 AMSSKRQGMWVVDPSRTPALGV 248
+ + G V+ + AL V
Sbjct: 131 PYFNNQVGGQVLLGASGAALSV 152
>gi|324513031|gb|ADY45374.1| Presenilins-associated rhomboid-like protein [Ascaris suum]
Length = 338
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 10/148 (6%)
Query: 90 FFDGKVLFFRAQFPERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPK-F 148
F+D V FF ++ F W W+R + + ++ ANTA+F+LW++ + F
Sbjct: 100 FWDETVDFFGVSAQQQQI--FADEW--WVRMSDGQKTSFYILAANTAIFLLWKVKTLEPF 155
Query: 149 MANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLY-FFGMSIGRTLGPEYLLK 206
M FT +++ S L +I SAFSH H+ NM LY F G+SI R LG + +
Sbjct: 156 MWRWFT---NSYASKALCLPMILSAFSHSHWLHLGINMYVLYSFAGVSIDRFLGLDQFMA 212
Query: 207 LYMAGAIGGSVFYLVYHAFLAMSSKRQG 234
Y+ A S+ L++ + S + G
Sbjct: 213 FYVTAASISSLTSLLHKCAIGSSVRALG 240
>gi|354495102|ref|XP_003509671.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like [Cricetulus griseus]
Length = 311
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 72/153 (47%), Gaps = 12/153 (7%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ R W + V G+I ANT VF LWR+
Sbjct: 127 QSYFDGIKADWLDSIRPQKE-GDLRKEINKWWNSLSDGQRTVTGIIAANTLVFCLWRVPS 185
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 186 LNRTMMRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 242
Query: 204 LLKLYM-AGAIGGSVFYLVYHA---FLAMSSKR 232
+ +Y+ AG I V Y+ A + AMS K
Sbjct: 243 FVAVYLSAGVISNFVSYVCKVATGRYGAMSFKE 275
>gi|254446868|ref|ZP_05060343.1| peptidase, S54 (rhomboid) family, putative [Verrucomicrobiae
bacterium DG1235]
gi|198256293|gb|EDY80602.1| peptidase, S54 (rhomboid) family, putative [Verrucomicrobiae
bacterium DG1235]
Length = 297
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 130 LIIANTAVFMLWRIAD----PKFMANNFTISLDNFLSGRLHTLITSAFSHIDVE----HI 181
+I AN AVF+L I D P ++ N F D+ SG + T IT +F H H+
Sbjct: 22 IIGANIAVFVLQNIFDREGGPGYIGNFFAFHSDSLQSGMIWTPITYSFLHKVSNGLPLHL 81
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
+ NM+G++F G ++ LG L+LY + G++ + V
Sbjct: 82 IGNMLGVFFLGRAVLPVLGQSRFLQLYFGASFVGAILWFV 121
>gi|238485031|ref|XP_002373754.1| rhomboid family protein, putative [Aspergillus flavus NRRL3357]
gi|220701804|gb|EED58142.1| rhomboid family protein, putative [Aspergillus flavus NRRL3357]
Length = 492
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 115 RSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKF-MANNFTISLDNFLSGRLHTLITSAF 173
R W ++ V +I N VF+LW++ P + + N I++ + R +LI + F
Sbjct: 345 RLWPDVPPAAATVMAIIGTNVGVFLLWKLCPPAWRLLNRHFITVAAY--PRPLSLIGNVF 402
Query: 174 SHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS 216
SH V H+ NM+ L+F G + +G L LY+A + GS
Sbjct: 403 SHQTVNHLALNMVVLWFVGTRLHDEIGRGNFLALYLASGVFGS 445
>gi|291400361|ref|XP_002716535.1| PREDICTED: presenilin associated, rhomboid-like isoform 1
[Oryctolagus cuniculus]
Length = 377
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 9/139 (6%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 127 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVFVFCLWRVPS 185
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 186 LQRTMIKYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 242
Query: 204 LLKLYM-AGAIGGSVFYLV 221
+ +Y+ AG I V Y+
Sbjct: 243 FMAVYLSAGVISNFVSYVC 261
>gi|442770672|gb|AGC71381.1| putative Rhomboid family protein [uncultured bacterium
A1Q1_fos_1815]
Length = 281
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 84/186 (45%), Gaps = 29/186 (15%)
Query: 121 YGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISL---DNFLSGRLHTLITSAFSH-- 175
+ + V+ LII N A++++ + P+ ++L D+ L L +T F+H
Sbjct: 21 WSNRSVISWLIIINVALYVIDILVSPRTHDVTEFLALHSSDSNLPWMLWRTLTYGFAHSP 80
Query: 176 IDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQG- 234
+V H+ NM+GL+ G ++ G L++Y+ + G +L+ H++ + G
Sbjct: 81 YNVFHLFWNMLGLWMLGRAVEELYGKWEFLRIYLVAVVLGGAGWLLRHSWSGETGVVLGA 140
Query: 235 ---------------------MWVVDPSRTPALGVFLIGKDMLRIIEGNSNISGSAHLGG 273
+W V P+ +GVFL+ ++++ + SNI+ HL G
Sbjct: 141 SGAVCCVEMLFILNFPRVILMIWGVIPTPAWLVGVFLVAGNLIQ--DSRSNIAIDVHLIG 198
Query: 274 AAVAAL 279
A AA+
Sbjct: 199 IAFAAV 204
>gi|397524084|ref|XP_003832040.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial isoform 1 [Pan paniscus]
Length = 379
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 66/138 (47%), Gaps = 9/138 (6%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 129 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVLVFCLWRVPS 187
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 188 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 244
Query: 204 LLKLYM-AGAIGGSVFYL 220
+ +Y+ AG I V Y+
Sbjct: 245 FMAVYLSAGVISNFVSYV 262
>gi|197102162|ref|NP_001126768.1| presenilins-associated rhomboid-like protein, mitochondrial
precursor [Pongo abelii]
gi|62511102|sp|Q5R5H4.1|PARL_PONAB RecName: Full=Presenilins-associated rhomboid-like protein,
mitochondrial; AltName: Full=Mitochondrial
intramembrane-cleaving protease PARL; Contains: RecName:
Full=P-beta; Short=Pbeta; Flags: Precursor
gi|55732584|emb|CAH92992.1| hypothetical protein [Pongo abelii]
Length = 379
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 66/138 (47%), Gaps = 9/138 (6%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 129 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVLVFCLWRVPS 187
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 188 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 244
Query: 204 LLKLYM-AGAIGGSVFYL 220
+ +Y+ AG I V Y+
Sbjct: 245 FMAVYLSAGVISNFVSYV 262
>gi|332214918|ref|XP_003256582.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial isoform 1 [Nomascus leucogenys]
Length = 379
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 66/138 (47%), Gaps = 9/138 (6%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 129 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVLVFCLWRVPS 187
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 188 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 244
Query: 204 LLKLYM-AGAIGGSVFYL 220
+ +Y+ AG I V Y+
Sbjct: 245 FMAVYLSAGVISNFVSYV 262
>gi|426343052|ref|XP_004038132.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial isoform 1 [Gorilla gorilla gorilla]
Length = 379
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 66/138 (47%), Gaps = 9/138 (6%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 129 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVLVFCLWRVPS 187
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 188 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 244
Query: 204 LLKLYM-AGAIGGSVFYL 220
+ +Y+ AG I V Y+
Sbjct: 245 FMAVYLSAGVISNFVSYV 262
>gi|389774391|ref|ZP_10192510.1| hypothetical protein UU7_01252 [Rhodanobacter spathiphylli B39]
gi|388437990|gb|EIL94745.1| hypothetical protein UU7_01252 [Rhodanobacter spathiphylli B39]
Length = 204
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLY 189
L+IAN AVF+L ++ + N L + L G + ++TSAF H + HI NMI LY
Sbjct: 12 LLIANVAVFLLQQVMGQVLLLNFALWPLGSGLFG-VWQIVTSAFMHGSLTHIAFNMIALY 70
Query: 190 FFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL 220
FG +I RT G Y AI S+ L
Sbjct: 71 MFGGTIERTFGARNFTLYYFVCAISASLLQL 101
>gi|328868749|gb|EGG17127.1| hypothetical protein DFA_08109 [Dictyostelium fasciculatum]
Length = 188
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 149 MANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLY 208
M NFT+S N L R +TL+T+AFSH D+ H+ SNM L FG + LG + LY
Sbjct: 1 MLENFTLSPRN-LEERPYTLLTAAFSHKDLGHLCSNMYSLNAFGPLMINALGTPLFVSLY 59
Query: 209 MAGAIGGSVFYLV 221
A+ S+ YLV
Sbjct: 60 FGAAVFSSLVYLV 72
>gi|74003236|ref|XP_545224.2| PREDICTED: presenilin associated, rhomboid-like isoform 2 [Canis
lupus familiaris]
Length = 379
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 9/139 (6%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 129 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVFVFCLWRVPS 187
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 188 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 244
Query: 204 LLKLYM-AGAIGGSVFYLV 221
+ +Y+ AG I V Y+
Sbjct: 245 FMAVYLSAGVISNFVSYVC 263
>gi|20127652|ref|NP_061092.3| presenilins-associated rhomboid-like protein, mitochondrial isoform
1 preproprotein [Homo sapiens]
gi|143811433|sp|Q9H300.2|PARL_HUMAN RecName: Full=Presenilins-associated rhomboid-like protein,
mitochondrial; AltName: Full=Mitochondrial intramembrane
cleaving protease PARL; Contains: RecName: Full=P-beta;
Short=Pbeta; Flags: Precursor
gi|15559382|gb|AAH14058.1| Presenilin associated, rhomboid-like [Homo sapiens]
gi|119598718|gb|EAW78312.1| presenilin associated, rhomboid-like, isoform CRA_b [Homo sapiens]
gi|123993533|gb|ABM84368.1| presenilin associated, rhomboid-like [synthetic construct]
gi|124000479|gb|ABM87748.1| presenilin associated, rhomboid-like [synthetic construct]
Length = 379
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 66/138 (47%), Gaps = 9/138 (6%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 129 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVLVFCLWRVPS 187
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 188 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 244
Query: 204 LLKLYM-AGAIGGSVFYL 220
+ +Y+ AG I V Y+
Sbjct: 245 FMAVYLSAGVISNFVSYV 262
>gi|225678271|gb|EEH16555.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 585
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADPKF-MANNFTISLDNFLSGRLHTLITSAFSHIDVEHI 181
++ V GLI AN +F LWR P + M N + IS+ L +++ S FSH +H+
Sbjct: 363 AAATVIGLIGANFLIFALWRGFPPSWRMLNRYFISVP--LYPHSISVVGSVFSHQQFQHL 420
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+NM+ L+F G + + LG L LY++ + S+ L H
Sbjct: 421 AANMLILWFVGTRLHQELGRGDFLSLYLSSGVFASLTSLTVHVL 464
>gi|325287716|ref|YP_004263506.1| peptidase S54, rhomboid domain-containing protein [Cellulophaga
lytica DSM 7489]
gi|324323170|gb|ADY30635.1| Peptidase S54, rhomboid domain protein [Cellulophaga lytica DSM
7489]
Length = 215
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 76/170 (44%), Gaps = 29/170 (17%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLY 189
+IIA +F L + D F + S+ +G+ + TS F H+D+ HI NM LY
Sbjct: 9 VIIALNIIFTLKGLKDTSFF-ERYKFSIGGIKAGQKERMFTSGFLHVDISHIFFNMFTLY 67
Query: 190 FFGMSIGRTLGPEYLLKLYMA-------------------GAIG--GSVFYLVYHAFLAM 228
FF + +GP Y + +Y+ A+G G+V ++Y A L
Sbjct: 68 FFANVVIAYMGPLYFVLMYVISLLAGSLLALFFHKDEPYYSAVGASGAVTGILYAAILLE 127
Query: 229 SSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEGN----SNISGSAHLGGA 274
+ R G+ + P PA VF IG +L I G NI +AH GGA
Sbjct: 128 PNMRLGIMFI-PIPMPAY-VFGIGY-LLYSIYGMKKRIGNIGHTAHFGGA 174
>gi|261198913|ref|XP_002625858.1| rhomboid family protein [Ajellomyces dermatitidis SLH14081]
gi|239595010|gb|EEQ77591.1| rhomboid family protein [Ajellomyces dermatitidis SLH14081]
Length = 570
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADPKF-MANNFTISLDNFLSGRLHTLITSAFSHIDVEHI 181
++ V GLI AN +F +WR P + M N + IS+ + +++ S FSH H+
Sbjct: 350 AAATVIGLIGANVLIFAMWRAVPPAWRMLNRYFISVPLYPYS--ISIVGSIFSHQQFRHL 407
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+NM+ L+F G + LG L LY + + S+ L H
Sbjct: 408 GANMLILWFIGTRLHEELGRADFLSLYFSAGVIASLTSLTAHVL 451
>gi|149731148|ref|XP_001496736.1| PREDICTED: presenilin associated, rhomboid-like isoform 1 [Equus
caballus]
Length = 379
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 9/139 (6%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 129 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVFVFCLWRVPS 187
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 188 LQRTMVRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 244
Query: 204 LLKLYM-AGAIGGSVFYLV 221
+ +Y+ AG I V Y+
Sbjct: 245 FMAVYLSAGVISTFVSYVC 263
>gi|114590628|ref|XP_001135897.1| PREDICTED: presenilin associated, rhomboid-like isoform 4 [Pan
troglodytes]
gi|410213876|gb|JAA04157.1| presenilin associated, rhomboid-like [Pan troglodytes]
gi|410248060|gb|JAA11997.1| presenilin associated, rhomboid-like [Pan troglodytes]
gi|410291898|gb|JAA24549.1| presenilin associated, rhomboid-like [Pan troglodytes]
gi|410337999|gb|JAA37946.1| presenilin associated, rhomboid-like [Pan troglodytes]
Length = 379
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 66/138 (47%), Gaps = 9/138 (6%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 129 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVLVFCLWRVPS 187
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 188 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 244
Query: 204 LLKLYM-AGAIGGSVFYL 220
+ +Y+ AG I V Y+
Sbjct: 245 FMAVYLSAGVISNFVSYV 262
>gi|350629377|gb|EHA17750.1| hypothetical protein ASPNIDRAFT_38635 [Aspergillus niger ATCC 1015]
Length = 503
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Query: 115 RSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFS 174
R W S+ V +I NTA+F LW + N + IS+ + + L+ + FS
Sbjct: 280 RLWPNIPRSAATVGTIIGINTAIFALWWFPPCWRLFNRYLISIPANPNPPVR-LLGNIFS 338
Query: 175 HIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
H +H++SNM+ L+F G + +G L LY+A + GS L H +A
Sbjct: 339 HQYPKHLISNMLFLWFIGTKLHDEIGRGEFLSLYIASGVVGSFVTLTAHCLMA 391
>gi|120406695|ref|YP_956524.1| rhomboid family protein [Mycobacterium vanbaalenii PYR-1]
gi|119959513|gb|ABM16518.1| Rhomboid family protein [Mycobacterium vanbaalenii PYR-1]
Length = 290
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 55/107 (51%), Gaps = 4/107 (3%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM 185
V Y LI N +F L ++A P + + G L+ L+TSAF H V HI NM
Sbjct: 80 VTYALIGLNLLMFAL-QMASPD-LDRALGLWPPAAADGELYRLLTSAFLHFSVTHIAFNM 137
Query: 186 IGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS--VFYLVYHAFLAMSS 230
+ LYF G + LG + LY+ A+GGS V+ L ++A A +S
Sbjct: 138 LALYFVGAPLEFALGRLRFVALYLFSALGGSVLVYLLTFNALTAGAS 184
>gi|86142879|ref|ZP_01061301.1| putative transmembrane rhomboid family protein [Leeuwenhoekiella
blandensis MED217]
gi|85830324|gb|EAQ48783.1| putative transmembrane rhomboid family protein [Leeuwenhoekiella
blandensis MED217]
Length = 297
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 37/189 (19%)
Query: 120 QYGSSEVVYGLIIANTAV---FML--WRIADPKFMANNFTISLDNFLSGRL----HTLIT 170
Q+ ++ +V LI+ N V FML W + +++ F++ D GRL +L+T
Sbjct: 9 QFKTANIVVKLIVINVLVWIGFMLLEWMLNSGAILSHWFSLPTD---LGRLIIQPWSLLT 65
Query: 171 SAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAI-GGSVFYLVYHAF---- 225
AF H HI NM+ LY+FG + + L +Y+ GA+ GG +F L Y+ F
Sbjct: 66 YAFLHAGFWHIFWNMLILYWFGQIVLNLFTEKRFLTIYLLGALSGGVLFVLAYNLFPVLI 125
Query: 226 ------LAMSSKRQGMWVVDPSRTPA--------------LGVFLIGKDMLRIIEGNSNI 265
+ S+ + + + + TP +GVF++ D+++I +
Sbjct: 126 TSSAYLVGASAAVRAIMIFIAAYTPNTEVRVIFFNVKLWHIGVFVVLTDLIQIPSSGNAG 185
Query: 266 SGSAHLGGA 274
AH+GGA
Sbjct: 186 GLLAHVGGA 194
>gi|121702153|ref|XP_001269341.1| rhomboid family protein, putative [Aspergillus clavatus NRRL 1]
gi|119397484|gb|EAW07915.1| rhomboid family protein, putative [Aspergillus clavatus NRRL 1]
Length = 568
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 115 RSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH--TLITSA 172
R W ++ V +I N A+++LW + + N + I++ + R +++ S
Sbjct: 348 RMWPDIPPAAATVLAIIGGNLAIYLLWCLPPAWRLLNRYFINV----AARPQPISIVGSV 403
Query: 173 FSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
FSH V+H+ NM+ L+F G + +G L LYMA GS+ L H L
Sbjct: 404 FSHQQVQHLGVNMLMLWFIGTRLHDDIGRGQFLGLYMAAGAFGSMASLTVHVLLG 458
>gi|392969396|ref|ZP_10334811.1| Rhomboid family protein [Fibrisoma limi BUZ 3]
gi|387841590|emb|CCH56869.1| Rhomboid family protein [Fibrisoma limi BUZ 3]
Length = 307
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 53/106 (50%), Gaps = 12/106 (11%)
Query: 130 LIIANTAVFMLWRIADPKF-MANN--------FTISLDNFLSGRLH---TLITSAFSHID 177
LI+ NT VF+ +A MAN +++ LS LH TL T F+H D
Sbjct: 22 LILVNTVVFLTLLLARVGLTMANQPGTYDFILAQLTIPATLSAFLHKPWTLFTYFFTHQD 81
Query: 178 VEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
+ HI+ NM+ LY+FG I LG L+ LY G + G YL+ +
Sbjct: 82 IFHILYNMLFLYWFGRLIDEYLGNRRLVGLYFLGGLAGGALYLLMY 127
>gi|110287782|sp|Q2KHV4.1|PARL_BOVIN RecName: Full=Presenilins-associated rhomboid-like protein,
mitochondrial; AltName: Full=Mitochondrial intramembrane
cleaving protease PARL; Contains: RecName: Full=P-beta;
Short=Pbeta; Flags: Precursor
gi|86826405|gb|AAI12870.1| Presenilin associated, rhomboid-like [Bos taurus]
gi|296491236|tpg|DAA33299.1| TPA: presenilins-associated rhomboid-like protein, mitochondrial
precursor [Bos taurus]
Length = 377
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 9/139 (6%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 127 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVFVFCLWRVPS 185
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 186 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 242
Query: 204 LLKLYM-AGAIGGSVFYLV 221
+ +Y+ AG I V Y+
Sbjct: 243 FMAVYLSAGVISTFVSYVC 261
>gi|350591766|ref|XP_003483328.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like isoform 1 [Sus scrofa]
Length = 379
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 65/139 (46%), Gaps = 9/139 (6%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 129 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVFVFCLWRVPS 187
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 188 LQRTMIRYFT---SNPASKVLCAPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 244
Query: 204 LLKLYM-AGAIGGSVFYLV 221
+ +Y+ AG I V Y+
Sbjct: 245 FMAVYLSAGVISNFVSYVC 263
>gi|126667892|ref|ZP_01738858.1| rhomboid family protein [Marinobacter sp. ELB17]
gi|126627708|gb|EAZ98339.1| rhomboid family protein [Marinobacter sp. ELB17]
Length = 225
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 84/192 (43%), Gaps = 29/192 (15%)
Query: 117 WLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHI 176
WL S+E+ GL+I + + + +A+ LD G++ LIT F H
Sbjct: 41 WLTAMSSNELAAGLMIVDPRQYEWFSLAE------RLNALLDTLSKGQVWRLITPDFLHF 94
Query: 177 DVEHIVSNMIGLYFFGMSI----GRTL-------------GPEYLLKLYMAGAIGGSVFY 219
HI+ N + L+F G I GRT G +YL+ + G + G V+
Sbjct: 95 SWPHIIFNSVMLWFLGSQIEFIDGRTRLLVLALVASLLSNGLQYLVTGPLFGGLSGVVYA 154
Query: 220 LVYHAFLAMSSKRQGMWVVDPSR-TPALGVFLIGKDMLRIIEGNSNISGSAHLGG---AA 275
++ + +L S +R + P+ T AL ++G L + G N++ AHLGG
Sbjct: 155 IMGYCWL--SQRRLPRFQFPPALITFALAWMVLGFTPLPNMLGMGNMANEAHLGGFVAGL 212
Query: 276 VAALAWARIRRR 287
+ A+ W RR
Sbjct: 213 IVAVLWPPPGRR 224
>gi|110665602|gb|ABG81447.1| presenilin associated, rhomboid-like preproprotein [Bos taurus]
gi|119936502|gb|ABM06139.1| presenilin associated, rhomboid-like isoform 1 preproprotein [Bos
taurus]
Length = 376
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 9/139 (6%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 126 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVFVFCLWRVPS 184
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 185 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 241
Query: 204 LLKLYM-AGAIGGSVFYLV 221
+ +Y+ AG I V Y+
Sbjct: 242 FMAVYLSAGVISTFVSYVC 260
>gi|453381363|dbj|GAC84026.1| rhomboid family protein [Gordonia paraffinivorans NBRC 108238]
Length = 294
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 10/117 (8%)
Query: 126 VVYGLIIANTAVFMLWRI--------ADPKFMANNFTISLDNFLSGRLHTLITSAFSHID 177
V YGLI N VF+L A P F + S + SG L+T+ F H
Sbjct: 70 VTYGLIAVNVLVFLLCAAQAGFGDPGAAPLFAEGDLLKS--DVASGEYWRLLTAGFLHFS 127
Query: 178 VEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQG 234
V HI NM+ LY G + LG L +Y+ +GGS +++ A A+++ G
Sbjct: 128 VMHIAVNMLSLYILGRDLELALGMFRYLAIYLIALLGGSAAVMLFEADRAVTAGASG 184
>gi|328771971|gb|EGF82010.1| hypothetical protein BATDEDRAFT_86744 [Batrachochytrium
dendrobatidis JAM81]
Length = 396
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 17/149 (11%)
Query: 92 DGKVLFFRAQF---PERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWR------ 142
D V FR+ F +R ++ W+ + +V ++I N AV ++W
Sbjct: 141 DWPVSLFRSNFRNNTQRELSNQNRDVFQWMEDW--KKVFAIILIINIAVLLMWNSARFMA 198
Query: 143 -----IADPKFMANNFTISLDN-FLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIG 196
++ ++M ++FT+S F RL T +T FSH D+ H NM LY F +
Sbjct: 199 VSMNDVSSLRWMVDHFTVSAKGLFQEHRLWTAMTCCFSHSDLLHFGMNMFVLYSFIQPVV 258
Query: 197 RTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+LG + LY+ IG S+ ++ A+
Sbjct: 259 LSLGVSTFIGLYLVSGIGSSLASALHIAY 287
>gi|239637639|ref|ZP_04678611.1| rhomboid family protein [Staphylococcus warneri L37603]
gi|239596857|gb|EEQ79382.1| rhomboid family protein [Staphylococcus warneri L37603]
Length = 484
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 77/170 (45%), Gaps = 24/170 (14%)
Query: 124 SEVVYGLIIANTAVFMLW-----RIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDV 178
S + Y LII+N A+++ R +D K + + N + G + L+TS F H +
Sbjct: 157 SPITYILIISNVALWLCMILYFNRFSDIKLLDVGGLVHF-NVVHGEWYRLVTSMFLHYNF 215
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA-----------FLA 227
EHI+ NM+ LY FG + LG +L +Y+ I G+ L ++ F
Sbjct: 216 EHILMNMLSLYIFGKIVESVLGSWKMLAIYLFAGIFGNFVSLSFNTTTISVGASGAIFGL 275
Query: 228 MSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG----NSNISGSAHLGG 273
+ S +++ +G LI L I+ G SNI+ AHLGG
Sbjct: 276 IGSIFAILYLSKTFDKKVIGQLLIA---LVILIGLSLFMSNINVMAHLGG 322
>gi|388854089|emb|CCF52239.1| uncharacterized protein [Ustilago hordei]
Length = 350
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 55/125 (44%), Gaps = 14/125 (11%)
Query: 108 ASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLW--------RIADPK---FMANNFTIS 156
AS R+ S L Q S V+Y L+ N VF+ W + +D + F+ NF
Sbjct: 132 ASLDTRFFSGLPQ---SFVLYTLLALNFLVFISWLYASETLRKFSDSRPFIFLCKNFLSG 188
Query: 157 LDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS 216
N GR T+ITS SH + H + NMI L F + GP L LY + S
Sbjct: 189 WLNLSEGRWWTMITSCLSHAQLGHFLVNMISLSFMAPPVLALTGPSTFLALYFGAGVASS 248
Query: 217 VFYLV 221
+ ++
Sbjct: 249 IVSMI 253
>gi|374585119|ref|ZP_09658211.1| Rhomboid family protein [Leptonema illini DSM 21528]
gi|373873980|gb|EHQ05974.1| Rhomboid family protein [Leptonema illini DSM 21528]
Length = 283
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 7/105 (6%)
Query: 130 LIIANTAVFML---WRIADPKFMANNF----TISLDNFLSGRLHTLITSAFSHIDVEHIV 182
L+IANT + +L W +++P F F + +F GR++ +TS F H H++
Sbjct: 10 LVIANTGIHILLFWWAVSNPGFYIQGFYDQWGLVPADFWHGRVYQPLTSMFLHGGWLHLL 69
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
NMI L+ G +I T+G LY+ + G++F +V+ + L
Sbjct: 70 VNMIALWSLGTAIEMTVGAMRFGLLYIFSGLTGALFVVVFQSDLG 114
>gi|62751512|ref|NP_001015596.1| presenilins-associated rhomboid-like protein, mitochondrial
precursor [Bos taurus]
gi|59857717|gb|AAX08693.1| presenilin associated, rhomboid-like [Bos taurus]
Length = 377
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 9/139 (6%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 127 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVFVFCLWRVPS 185
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 186 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 242
Query: 204 LLKLYM-AGAIGGSVFYLV 221
+ +Y+ AG I V Y+
Sbjct: 243 FMAVYLSAGVISTFVSYVC 261
>gi|169618004|ref|XP_001802416.1| hypothetical protein SNOG_12187 [Phaeosphaeria nodorum SN15]
gi|111059479|gb|EAT80599.1| hypothetical protein SNOG_12187 [Phaeosphaeria nodorum SN15]
Length = 276
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 72/173 (41%), Gaps = 32/173 (18%)
Query: 147 KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFG--MSIGRTLGPEYL 204
KFM N D + HTL+TS F+H ++ H+ +NM Y+ G + + P L
Sbjct: 101 KFMRNMSCNLTDVLHNNAYHTLLTSTFTHFNLFHLAANMFTTYYLGQFLCYAPVITPGRL 160
Query: 205 LKLYMAGAIGGSVFYL----------------------------VYHAFLAMSSKRQGMW 236
L + + + GSV YL A LA S+K Q ++
Sbjct: 161 LTIAIGAGLTGSVGYLWQRYLSTGAKGVDYRRGVGFSGALMGVISVAACLAPSAKVQ-LY 219
Query: 237 VVDPSRTPALGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRGF 289
+ P AL V D + + NS I+ S HLGG A LA+ +R RG
Sbjct: 220 GIVPVPLWALVVGYAAYDGYYLNDNNSRIAHSGHLGGLAF-GLAYYVLRLRGL 271
>gi|406605375|emb|CCH43174.1| Rhomboid protein 1, mitochondrial [Wickerhamomyces ciferrii]
Length = 335
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
++YGLI N VF LW+I + + + + + + + +LI SAFSH + H+ N
Sbjct: 135 HLIYGLIGLNLLVFGLWQIPRNYRILSRYALLEKDIIYSK-WSLIGSAFSHQEGWHLAMN 193
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
M+ LY FG S+ +G + LY+ GA+ S+ ++Y
Sbjct: 194 MLALYSFGTSLISMIGSSNFMILYLNGALLSSMASILY 231
>gi|418300399|ref|ZP_12912224.1| hypothetical protein ATCR1_22786 [Agrobacterium tumefaciens
CCNWGS0286]
gi|355533672|gb|EHH02996.1| hypothetical protein ATCR1_22786 [Agrobacterium tumefaciens
CCNWGS0286]
Length = 257
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 67/147 (45%), Gaps = 25/147 (17%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH--- 223
T+IT AF H+D H+ NM+ L+ FG ++ LG L Y+A AI G++F+ V
Sbjct: 75 TVITYAFLHLDFWHLAGNMLFLWVFGDNVEDALGHFRFLIFYLACAIVGALFHGVVSPTS 134
Query: 224 --AFLAMSSKRQG-------------MWVVDPSRTP-ALGVFL-----IGKDMLRIIEG- 261
+ S G +WV+ R P L F+ IG+ L + G
Sbjct: 135 EGPLIGASGAVSGVVAAYFLLHPRVRVWVLVLMRIPLPLPAFIPLALWIGQQFLMLALGL 194
Query: 262 NSNISGSAHLGGAAVAALAWARIRRRG 288
N+S AH+GG A+ +RRRG
Sbjct: 195 EENVSWGAHVGGIIAGAILVVFMRRRG 221
>gi|299747341|ref|XP_001836967.2| hypothetical protein CC1G_00103 [Coprinopsis cinerea okayama7#130]
gi|298407475|gb|EAU84584.2| hypothetical protein CC1G_00103 [Coprinopsis cinerea okayama7#130]
Length = 262
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 87/221 (39%), Gaps = 46/221 (20%)
Query: 103 PERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKF-----------MAN 151
P+R + F L + V+YG++ N VF W ++ K+ M
Sbjct: 44 PKRGYLDF-------LDRIPQKTVMYGILGVNGLVFGAWYMSQQKYKYERDPSAYLWMHQ 96
Query: 152 NFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAG 211
+FT S N GR TL+TS FSH D+ HI N +F + + +G + + LYM
Sbjct: 97 HFTSSWQNLRQGRYWTLLTSCFSHQDMAHIFFNGFTFFFTAPVVLQMIGSKRFIFLYMGC 156
Query: 212 AIGGSVFYLVY---------------------HAFLAMSSKRQGMWVVDPSRTPAL---- 246
+ S L+Y +FLA ++ ++ PA
Sbjct: 157 GLVSSAASLLYARYVDKRDRPSLGASGAIYSVTSFLACAAPTLSFYIYGIIPVPAWLLVS 216
Query: 247 GVFLIGKDMLRIIEGN-SNISGSAHLGGAAVAALAWARIRR 286
G+F D + ++ + HLGG A A ++ +RR
Sbjct: 217 GIF--AWDAYKTVQDKRGTVDTIGHLGGLAAGAASYIVLRR 255
>gi|323451184|gb|EGB07062.1| hypothetical protein AURANDRAFT_15696, partial [Aureococcus
anophagefferens]
Length = 111
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
HTL+TSAFSH D H++ NM+ L+FFG + +G + L +Y + + L +A
Sbjct: 2 HTLVTSAFSHSDGWHLLGNMVTLFFFGPEVVGAIGARHFLAVYFGAGLTANCAQLAANAL 61
Query: 226 LAMSSKRQGMW 236
S+R W
Sbjct: 62 --EDSRRHAYW 70
>gi|259488294|tpe|CBF87629.1| TPA: rhomboid family protein, putative (AFU_orthologue;
AFUA_1G09150) [Aspergillus nidulans FGSC A4]
Length = 571
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 3/112 (2%)
Query: 115 RSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKF-MANNFTISLDNFLSGRLHTLITSAF 173
R W ++ V +I N +F+LWR P + + N + IS+ + R+ L+ + F
Sbjct: 350 RMWPSLPPAAATVSAIIGLNVGIFVLWRAWPPAWRLLNRYFISVAAY--PRVFGLVGNVF 407
Query: 174 SHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
SH + H+ NM L+FFG + +G L LY+A + GS L H
Sbjct: 408 SHQHLMHLGINMSVLWFFGTKLHDEIGRGNFLALYIASGVFGSFASLTMHVL 459
>gi|145221663|ref|YP_001132341.1| rhomboid family protein [Mycobacterium gilvum PYR-GCK]
gi|145214149|gb|ABP43553.1| Rhomboid family protein [Mycobacterium gilvum PYR-GCK]
Length = 279
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM 185
V Y LI N F L ++A P + F + G ++ L+TSAF H + H+ NM
Sbjct: 69 VTYALIGINLLAFAL-QMASPG-LQRAFGLWSPAVADGEMYRLLTSAFLHFGLTHLAFNM 126
Query: 186 IGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
+ LYF G + LG + LY+ A+GGSV LVY
Sbjct: 127 LALYFVGPPLEAALGRARFITLYLVSALGGSV--LVY 161
>gi|219118201|ref|XP_002179880.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408933|gb|EEC48866.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 327
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 81/192 (42%), Gaps = 42/192 (21%)
Query: 133 ANTAVFMLWRI-ADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFF 191
A+ AVFMLWR+ A + +F ++ N SGRL TL S+ SHI H+ N+ L
Sbjct: 123 ASLAVFMLWRVPAVRPILQKHFVVNRLNLQSGRLLTLFLSSVSHIGFYHLAVNIAALLSL 182
Query: 192 GMSIGRTLGPEY---LLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPA--- 245
G + R L + L L + A SV AFLA+ QG + T A
Sbjct: 183 GPVVQRMLFSQSRWPLWPLIVGAASVSSV------AFLALDRSGQGSCLGLSGVTVALLA 236
Query: 246 ----------LGVFLIGKDMLR------------------IIEGNSNISGSAHLGGAAVA 277
LG+ L G +R + + +S ++ SAHLGG +
Sbjct: 237 VFARMYPTHVLGILLAGVIPIRLQASQLLQLVFIWSLFGSVAQIHSQVAHSAHLGG-ILF 295
Query: 278 ALAWARIRRRGF 289
LA+ + +R F
Sbjct: 296 GLAYCEVWKRRF 307
>gi|335037404|ref|ZP_08530710.1| hypothetical protein AGRO_4719 [Agrobacterium sp. ATCC 31749]
gi|333791069|gb|EGL62460.1| hypothetical protein AGRO_4719 [Agrobacterium sp. ATCC 31749]
Length = 257
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 85/207 (41%), Gaps = 48/207 (23%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLD---------NFLSGRLH------TLIT 170
V GLI+ N V++ + AN + L +L L T++T
Sbjct: 19 VTIGLIVINVLVWLFTGVLASDVQANAAALGLGFIPAVVFDYAYLEPALQVVPDDLTVVT 78
Query: 171 SAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSS 230
AF H+D H+ NM+ L+ FG ++ LG L Y+ AI G++F H F+A +S
Sbjct: 79 YAFLHLDFWHLAGNMLFLWVFGDNVEDALGHFRFLIFYLVCAIAGALF----HGFVAPTS 134
Query: 231 K----------------------RQGMWVVDPSRTP-ALGVFL-----IGKDMLRIIEG- 261
+ R +WV+ R P L F+ IG+ L + G
Sbjct: 135 EGPLIGASGAVSGVVAAYFLLHPRVRVWVLVLMRIPLPLPAFIPLALWIGQQFLMLALGL 194
Query: 262 NSNISGSAHLGGAAVAALAWARIRRRG 288
N+S AH+GG A+ +RR G
Sbjct: 195 EENVSWGAHVGGILAGAIMVIFMRRPG 221
>gi|340521983|gb|EGR52216.1| predicted protein [Trichoderma reesei QM6a]
Length = 563
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 9/124 (7%)
Query: 111 RYRWRSWLRQYGSSEVVYGLIIA-NTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLI 169
RYR R+ +S G +IA N V++ WRI + N + I + + R TL
Sbjct: 332 RYRL---FREVSTSHATVGALIAINALVYLGWRIPPLWSLFNRYMIFV--VATVRPITLF 386
Query: 170 TSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYM-AGAIG--GSVFYLVYHAFL 226
T+AFSH + H++ NM+ L+F G + +G L LY+ G++G GS+ +L
Sbjct: 387 TAAFSHTKLSHLLVNMVPLWFVGTCLHDEIGRADFLALYLGCGSVGFLGSLITYTLRGWL 446
Query: 227 AMSS 230
++S
Sbjct: 447 TVTS 450
>gi|351709631|gb|EHB12550.1| Presenilins-associated rhomboid-like protein, mitochondrial
[Heterocephalus glaber]
Length = 378
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 67/139 (48%), Gaps = 9/139 (6%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRI-A 144
+S+FDG K + + P++ R W + V G+I AN VF LWR+ A
Sbjct: 129 QSYFDGVKADWLDSIRPQKK-GDLRKEINKWWNNLSDGQRTVTGIITANVLVFCLWRVPA 187
Query: 145 DPKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S+FSH + H+ +NM L+ F SI LG E
Sbjct: 188 LQRTMIRYFT---SNPASKVLCSPMLLSSFSHFSLFHMAANMYVLWSFSSSIVSILGQEQ 244
Query: 204 LLKLYM-AGAIGGSVFYLV 221
+ +Y+ AG I V Y+
Sbjct: 245 FMAVYLSAGVISNFVSYVC 263
>gi|390444463|ref|ZP_10232240.1| rhomboid family protein [Nitritalea halalkaliphila LW7]
gi|389664470|gb|EIM75962.1| rhomboid family protein [Nitritalea halalkaliphila LW7]
Length = 265
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 15/104 (14%)
Query: 122 GSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHI 181
GS VV ++ A+ L+ I P+F+ + I+ F H D H+
Sbjct: 18 GSFLVVSFILPELQAILALYYIQSPRFIPTQY---------------ISYMFMHADGWHL 62
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
SNM+GL+ FG + ++LGP+ LL L+M +G + Y Y +F
Sbjct: 63 FSNMLGLFVFGPLLEQSLGPKRLLTLWMVCGVGSGLLYSGYTSF 106
>gi|348582666|ref|XP_003477097.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like isoform 1 [Cavia porcellus]
Length = 379
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 9/139 (6%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ R W + V G+I AN VF LWR+
Sbjct: 129 QSYFDGVKADWLDSIRPQKK-GDLRKEINKWWNNLSDGQRTVTGIITANVLVFCLWRVPS 187
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L ++ S+FSH + H+ +NM L+ F SI LG E
Sbjct: 188 LQRTMIRYFT---SNPASKVLCAPMLLSSFSHFSLLHMAANMYVLWSFSSSIVNILGQEQ 244
Query: 204 LLKLYM-AGAIGGSVFYLV 221
+ +Y+ AG I V Y+
Sbjct: 245 FMAVYLSAGVISNFVSYVC 263
>gi|322698483|gb|EFY90253.1| rhomboid family protein [Metarhizium acridum CQMa 102]
Length = 575
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 62/124 (50%), Gaps = 9/124 (7%)
Query: 111 RYRWRSWLRQYGSSEVVYGLIIA-NTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLI 169
RYR LR ++ G +IA N VF+ WR+ + N + I + + R TL
Sbjct: 332 RYRL---LRDVSTAHATVGTLIALNALVFLGWRVPPLWSLFNKYMIFV--VATVRPPTLF 386
Query: 170 TSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYM-AGAIG--GSVFYLVYHAFL 226
T+ FSH + H++ NM+ L+F G ++ LG L LY+ GA G GS+ +L
Sbjct: 387 TAVFSHTRLSHMLVNMVPLWFIGTALHEELGRADFLTLYLGCGAAGFLGSLVTYTLRGWL 446
Query: 227 AMSS 230
++S
Sbjct: 447 TVTS 450
>gi|330932530|ref|XP_003303814.1| hypothetical protein PTT_16175 [Pyrenophora teres f. teres 0-1]
gi|311319957|gb|EFQ88103.1| hypothetical protein PTT_16175 [Pyrenophora teres f. teres 0-1]
Length = 275
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 14/115 (12%)
Query: 119 RQYGSSEVVYGLIIANTAVFML-----------WRIADPKFMANNFTISLDNFLSGRLHT 167
R+ + V+Y LI N AV+ +++ KF+ T++L F +G
Sbjct: 62 RETANRAVLYTLIGTNVAVYGYAMYLKQQAMQGYQLPFVKFL-QKMTLNLSEFQNGSYLP 120
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFG--MSIGRTLGPEYLLKLYMAGAIGGSVFYL 220
++TS F+HID+ HI SNM YF G ++ T+ P L + + + GS+ YL
Sbjct: 121 ILTSTFTHIDIGHIFSNMFTGYFLGSFLASAPTITPLRYLTIAIGSGLAGSIGYL 175
>gi|325955051|ref|YP_004238711.1| peptidase S54, rhomboid domain-containing protein [Weeksella virosa
DSM 16922]
gi|323437669|gb|ADX68133.1| Peptidase S54, rhomboid domain protein [Weeksella virosa DSM 16922]
Length = 297
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 80/200 (40%), Gaps = 33/200 (16%)
Query: 120 QYGSSEVVYGLIIANTAVFMLWRIAD-------PKFMANNFTI--SLDNFLSGRLHTLIT 170
+Y S + LI N F I P F +N S N L ++ T
Sbjct: 12 KYKSGNIATKLIYINIIFFFTILIVGFVLKKIFPSFQIDNIIALSSQPNALIKHPWSIFT 71
Query: 171 SAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL---------- 220
AF H ++ H+ NM+ LY+ R + L Y+ G +GG++FY
Sbjct: 72 YAFLHGELWHLFLNMLLLYYISSMFLRYFRDQDFLTFYILGILGGALFYCLFAGYFSSGS 131
Query: 221 ---------VYHAFLAMSSKRQGMWV---VDPSRTPALGV--FLIGKDMLRIIEGNSNIS 266
+Y F + S + V P+ P L + FL+G D+ +II+G ++
Sbjct: 132 SYLVGSSAAIYATFFGLVSYNPKIPVRLLFFPNSFPILYIAFFLLGLDVYQIIDGRNSGG 191
Query: 267 GSAHLGGAAVAALAWARIRR 286
+H GGAAV L + +
Sbjct: 192 SLSHFGGAAVGYLYMKQFEK 211
>gi|322708891|gb|EFZ00468.1| rhomboid family protein [Metarhizium anisopliae ARSEF 23]
Length = 574
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 62/124 (50%), Gaps = 9/124 (7%)
Query: 111 RYRWRSWLRQYGSSEVVYGLIIA-NTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLI 169
RYR LR ++ G +IA N VF+ WR+ + N + I + + R TL
Sbjct: 332 RYRL---LRDVSTAHATVGTLIALNALVFLGWRVPPLWPLFNKYMIFV--VATVRPPTLF 386
Query: 170 TSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYM-AGAIG--GSVFYLVYHAFL 226
T+ FSH + H++ NM+ L+F G ++ LG L LY+ GA G GS+ +L
Sbjct: 387 TAVFSHTRLSHMLVNMVPLWFIGTALHEELGRADFLALYLGCGAAGFLGSLVTYTLRGWL 446
Query: 227 AMSS 230
++S
Sbjct: 447 TVTS 450
>gi|182415306|ref|YP_001820372.1| rhomboid family protein [Opitutus terrae PB90-1]
gi|177842520|gb|ACB76772.1| Rhomboid family protein [Opitutus terrae PB90-1]
Length = 297
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 7/107 (6%)
Query: 124 SEVVYGLIIANTAVF----MLWRIADPKFMANNFT-ISLDNFLSGRLHTLITSAFSHIDV 178
+ V+ LI A A+F +LWR+ + + + +S+ N +GR+ TL+T +F H
Sbjct: 17 TTVLTWLISAIVAMFVLQHLLWRLFNADTLLDQLLGLSVANLKAGRIWTLVTYSFLHSKA 76
Query: 179 E--HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
HI++N++GLYF G + LG L LY A G +L H
Sbjct: 77 NFLHIIANLLGLYFVGRVLLPVLGSRRFLGLYAAAVGLGGALWLGTH 123
>gi|222619290|gb|EEE55422.1| hypothetical protein OsJ_03549 [Oryza sativa Japonica Group]
Length = 145
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 45/103 (43%), Gaps = 37/103 (35%)
Query: 194 SIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPA-------- 245
I GP +LLKLY+AGA+ GS F+L+ AFLA + G W D SRTPA
Sbjct: 14 QISNMFGPAFLLKLYVAGALAGSAFFLLEKAFLAPRRQFYGGW--DNSRTPALGASAAAN 71
Query: 246 ---------------------------LGVFLIGKDMLRIIEG 261
+G LIG D+LR+ EG
Sbjct: 72 AIILLDIFLYPKKLVYLYFFIPIPAAIMGAILIGADLLRVKEG 114
>gi|332291110|ref|YP_004429719.1| rhomboid family protein [Krokinobacter sp. 4H-3-7-5]
gi|332169196|gb|AEE18451.1| Rhomboid family protein [Krokinobacter sp. 4H-3-7-5]
Length = 294
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 34/188 (18%)
Query: 120 QYGSSEVVYGLIIANTAVFMLWRIA------DPKFMANNFTISLD--NFLSGRLHTLITS 171
+Y ++ + LI+ N AV++L+ I F + F + D FL + +++T
Sbjct: 9 KYSTANIAIKLIVINVAVYLLFNIIPWISGLGSDFFSRYFVLPSDFVRFLQ-QPWSILTY 67
Query: 172 AFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAI-GGSVFYLVYH------- 223
AF H H+ NM+ LY F + + + +Y+ GAI GG++F L+Y+
Sbjct: 68 AFLHAGFGHLFWNMVWLYVFSRFVLNIFSEKKFIAIYLLGAIAGGTLFALLYNVLPAFRG 127
Query: 224 --AFLAMSSKRQGMWVVDPSRTPA--------------LGVFLIGKDMLRIIEGNSNISG 267
L S+ + V + TP + VF++ +D+L + GN+
Sbjct: 128 TGVLLGASAAVNAIVVFIGTYTPNAEIRIFTFNIKLWWIAVFVVLRDLLMLDSGNAG-GL 186
Query: 268 SAHLGGAA 275
+HLGGAA
Sbjct: 187 ISHLGGAA 194
>gi|398348471|ref|ZP_10533174.1| intramembrane serine protease [Leptospira broomii str. 5399]
Length = 199
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 130 LIIANTAVFMLWRI-ADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGL 188
+ I TA F L+ + +P+ + + GR +TLITSAF H D+ H++ NMI L
Sbjct: 5 ITIGITAAFSLYALMGNPELLEKFLLRPFRDSREGRYYTLITSAFLHSDIFHLMFNMITL 64
Query: 189 YFFGMSIGRTLGPEYLLKLYMAGAIGGS 216
YFFG ++ T+G + +Y + S
Sbjct: 65 YFFGPAVEYTIGGLGFVGIYFTAILAAS 92
>gi|224000738|ref|XP_002290041.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973463|gb|EED91793.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 314
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 86/198 (43%), Gaps = 32/198 (16%)
Query: 121 YGSSEVVYGLIIANTAVFMLWRIADP----KFMANNFTISLDNFL-SGRLHTLITSAFSH 175
Y S ++ +++ +F+LW+ K + N+F S N + R + LITSAFSH
Sbjct: 96 YKLSPTLWNGTLSSIVLFLLWQFPTSSKVSKILQNHFVCSRRNVVVKKRFYALITSAFSH 155
Query: 176 IDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAG--AIGGSVFYL------------- 220
HI NM FG S+ + L + + G A+ GS+ +L
Sbjct: 156 ASFHHIAVNMYAFLNFGPSVKQVLASQGVALWPFVGLAAVFGSLVFLALDNGSGSCIGLS 215
Query: 221 -VYHAFLAMSS----KRQGMWVVD--PSRTPALGVF--LIG---KDMLRIIEGNSNISGS 268
V A LA S ++ +V P PA +F L+G ++ ++ G SN++ S
Sbjct: 216 GVTLALLAFDSMVYPSKELRMIVSFIPIHLPAYYLFIGLLGFSVAGVMGLVGGRSNVAHS 275
Query: 269 AHLGGAAVAALAWARIRR 286
HLGG L + RR
Sbjct: 276 THLGGLVFGRLFYEAYRR 293
>gi|167527528|ref|XP_001748096.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773514|gb|EDQ87153.1| predicted protein [Monosiga brevicollis MX1]
Length = 395
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 54/97 (55%), Gaps = 8/97 (8%)
Query: 134 NTAVFMLWRIAD-PKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFG 192
N VF+LWR+ + +F+ NF + LSGRL ++ + SH D H + NMI F
Sbjct: 202 NAVVFLLWRLPNMQRFLLRNF---MHAPLSGRLTQMVGANISHKDAIHFLFNMIAFQSFA 258
Query: 193 MSI--GRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
+ + G+ G E+L L AG +G SV +V HAF+A
Sbjct: 259 VCVKNGQLTGGEFLALLGWAG-LGSSVASMV-HAFVA 293
>gi|114799025|ref|YP_759062.1| S54 family peptidase [Hyphomonas neptunium ATCC 15444]
gi|114739199|gb|ABI77324.1| peptidase, S54 (rhomboid) family [Hyphomonas neptunium ATCC 15444]
Length = 204
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 33/56 (58%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
G H LI+S F H++ H+ NM GLY FG I LG L +Y+A IGGSV+
Sbjct: 45 GEWHRLISSGFLHVNGPHLFLNMYGLYMFGPVIEHVLGGVNFLIIYLASLIGGSVW 100
>gi|384487892|gb|EIE80072.1| hypothetical protein RO3G_04777 [Rhizopus delemar RA 99-880]
Length = 157
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIV 182
S + + LI N+ VF+ W+I + + + + L + R TL+TS FSH + H
Sbjct: 4 SEKTLSTLIALNSIVFLAWQIPRLTPLMSQWFMHLPG--TKRNVTLLTSCFSHQEFFHFT 61
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
NM+GL+ FG I G E + +Y++ IG +V
Sbjct: 62 LNMVGLWSFGRVIHDHFGREQFVAMYLSAGIGANV 96
>gi|67521830|ref|XP_658976.1| hypothetical protein AN1372.2 [Aspergillus nidulans FGSC A4]
gi|40746399|gb|EAA65555.1| hypothetical protein AN1372.2 [Aspergillus nidulans FGSC A4]
Length = 448
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 3/112 (2%)
Query: 115 RSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKF-MANNFTISLDNFLSGRLHTLITSAF 173
R W ++ V +I N +F+LWR P + + N + IS+ + R+ L+ + F
Sbjct: 227 RMWPSLPPAAATVSAIIGLNVGIFVLWRAWPPAWRLLNRYFISVAAY--PRVFGLVGNVF 284
Query: 174 SHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
SH + H+ NM L+FFG + +G L LY+A + GS L H
Sbjct: 285 SHQHLMHLGINMSVLWFFGTKLHDEIGRGNFLALYIASGVFGSFASLTMHVL 336
>gi|410031402|ref|ZP_11281232.1| hypothetical protein MaAK2_19469 [Marinilabilia sp. AK2]
Length = 312
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 31/149 (20%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH--- 223
+++T F H + HI+ NM+ LY+FG+ + + LG L LY+ G I G+VFY+V +
Sbjct: 72 SILTYMFFHEGLFHILFNMLFLYWFGLLVDQYLGSRKLTNLYVLGGIAGAVFYVVMYNIS 131
Query: 224 -------AFLAMSSKRQGMWVV-------DPSRTPALGVFLIGKDMLRII---------- 259
F M G++ V P+ T L L+G ++ I
Sbjct: 132 PHFSEVLPFAKMLGASAGVYAVVVGAATLSPNTTFHL--LLLGPVKIKYIAIFYVVIAFV 189
Query: 260 -EGNSNISGS-AHLGGAAVAALAWARIRR 286
SN G AHLGGAA+ ++R+
Sbjct: 190 NSAGSNAGGELAHLGGAAMGYFYITQLRK 218
>gi|393241997|gb|EJD49517.1| hypothetical protein AURDEDRAFT_182989 [Auricularia delicata
TFB-10046 SS5]
Length = 359
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 100 AQFPERSFASFRYRW----RSWLR-QYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFT 154
+ PER + RW +L+ Q S +V G+ + N +VF+ R P+ N
Sbjct: 45 SPLPERLRGNGALRWPFDNAEYLKYQLDSFQVATGITVINLSVFLAPRC--PRLWGNLGR 102
Query: 155 ISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFG 192
+ + LSGR +TL T+ F HIDV H+ N +YFF
Sbjct: 103 HMIHHGLSGRSYTLFTAGFCHIDVFHLACNTACIYFFA 140
>gi|56971807|gb|AAH88226.1| Psarl protein, partial [Rattus norvegicus]
Length = 363
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 66/139 (47%), Gaps = 9/139 (6%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ + R W + V G+I AN VF LWR+
Sbjct: 113 QSYFDGIKADWLDSIRPQKE-GNLRKEINKWWNSLSDGQRTVTGIIAANALVFCLWRVPS 171
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 172 LHRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSTSIVNILGQEQ 228
Query: 204 LLKLYM-AGAIGGSVFYLV 221
+ +Y+ AG I V Y+
Sbjct: 229 FVAVYLSAGVISNFVSYVC 247
>gi|355709305|gb|AES03547.1| presenilin associated, rhomboid-like protein [Mustela putorius
furo]
Length = 340
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 9/139 (6%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ R W + V G+I AN VF LWR+
Sbjct: 96 QSYFDGIKADWLDSIRPQKE-GDIRKEINKWWNNLSDGQRTVTGIIAANVFVFCLWRVPS 154
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 155 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 211
Query: 204 LLKLYM-AGAIGGSVFYLV 221
+ +Y+ AG I V Y+
Sbjct: 212 FMAVYLSAGVISNFVSYVC 230
>gi|283457103|ref|YP_003361666.1| membrane protein [Rothia mucilaginosa DY-18]
gi|283133081|dbj|BAI63846.1| uncharacterized membrane protein [Rothia mucilaginosa DY-18]
Length = 303
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 77/170 (45%), Gaps = 30/170 (17%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHI--DVEHIV 182
+ Y LI+ N A++ L +I ++M N+ + G + LI+ F H D H+V
Sbjct: 107 HITYTLILINVAMYGLQQIIPNRWMVNHGMMWWPYVQHGEYYRLISYGFLHSQNDPMHLV 166
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYM-------------------AGAIGGSVFYLVYH 223
NMI L+ FG+S+ R +G L +Y+ AGA GG Y +Y
Sbjct: 167 WNMIYLFIFGVSLERMMGRWKFLVVYLGSIVFGAFGVHVLTPSTSVAGASGG--VYGLYG 224
Query: 224 AFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEGNSNISGSAHLGG 273
AFL + R+ T L + LIG +++ N NIS + H GG
Sbjct: 225 AFLVILLLRK------QKDTARLFMLLIGIGVVQSFF-NPNISHACHAGG 267
>gi|417643203|ref|ZP_12293263.1| peptidase, S54 family [Staphylococcus warneri VCU121]
gi|330685982|gb|EGG97605.1| peptidase, S54 family [Staphylococcus epidermidis VCU121]
Length = 405
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 76/173 (43%), Gaps = 30/173 (17%)
Query: 124 SEVVYGLIIANTAVFMLW-----RIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDV 178
S V Y LII+N +++ R +D K + + N + G + L+TS F H +
Sbjct: 157 SPVTYILIISNVILWLCMILYFNRFSDIKLLDVGGLVHF-NVVHGEWYRLVTSMFLHFNF 215
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYM-AGAIG-----------------GSVFYL 220
EHI+ NM+ LY FG + LG +L +Y+ AG G G++F L
Sbjct: 216 EHILMNMLSLYIFGKIVESVLGSWKMLAIYLFAGIFGNFVSLSFNTTTISVGASGAIFGL 275
Query: 221 VYHAFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEGNSNISGSAHLGG 273
+ F + + V AL V LIG + SNI+ AHLGG
Sbjct: 276 IGSIFAILYLSKTFDKRVIGQLLIAL-VILIGLSLFM-----SNINVMAHLGG 322
>gi|54261813|ref|NP_001005767.1| presenilins-associated rhomboid-like protein, mitochondrial
precursor [Mus musculus]
gi|62511107|sp|Q5XJY4.1|PARL_MOUSE RecName: Full=Presenilins-associated rhomboid-like protein,
mitochondrial; AltName: Full=Mitochondrial
intramembrane-cleaving protease PARL; Contains: RecName:
Full=P-beta; Short=Pbeta; Flags: Precursor
gi|53236985|gb|AAH83153.1| Presenilin associated, rhomboid-like [Mus musculus]
gi|74196057|dbj|BAE30581.1| unnamed protein product [Mus musculus]
gi|148665146|gb|EDK97562.1| presenilin associated, rhomboid-like [Mus musculus]
Length = 377
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 66/139 (47%), Gaps = 9/139 (6%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ + R W + V G+I AN VF LWR+
Sbjct: 127 QSYFDGIKADWLDSIRPQKE-GNLRKEINKWWNSLSDGQRTVTGIIAANALVFCLWRVPS 185
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 186 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 242
Query: 204 LLKLYM-AGAIGGSVFYLV 221
+ +Y+ AG I V Y+
Sbjct: 243 FVAVYLSAGVISNFVSYVC 261
>gi|109639153|ref|NP_001030326.1| presenilins-associated rhomboid-like protein, mitochondrial
precursor [Rattus norvegicus]
gi|118582201|sp|Q3B8P0.1|PARL_RAT RecName: Full=Presenilins-associated rhomboid-like protein,
mitochondrial; AltName: Full=Mitochondrial
intramembrane-cleaving protease PARL; Contains: RecName:
Full=P-beta; Short=Pbeta; Flags: Precursor
gi|77748257|gb|AAI05908.1| Presenilin associated, rhomboid-like [Rattus norvegicus]
gi|149019841|gb|EDL77989.1| rCG36805 [Rattus norvegicus]
gi|165970636|gb|AAI58565.1| Presenilin associated, rhomboid-like [Rattus norvegicus]
Length = 377
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 66/139 (47%), Gaps = 9/139 (6%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ + R W + V G+I AN VF LWR+
Sbjct: 127 QSYFDGIKADWLDSIRPQKE-GNLRKEINKWWNSLSDGQRTVTGIIAANALVFCLWRVPS 185
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 186 LHRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSTSIVNILGQEQ 242
Query: 204 LLKLYM-AGAIGGSVFYLV 221
+ +Y+ AG I V Y+
Sbjct: 243 FVAVYLSAGVISNFVSYVC 261
>gi|445059551|ref|YP_007384955.1| hypothetical protein A284_05970 [Staphylococcus warneri SG1]
gi|443425608|gb|AGC90511.1| hypothetical protein A284_05970 [Staphylococcus warneri SG1]
Length = 484
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 124 SEVVYGLIIANTAVFMLW-----RIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDV 178
S V Y LII+N +++ R +D K + + N + G + L+TS F H +
Sbjct: 157 SPVTYILIISNVILWLCMILYFNRFSDIKLLDVGGLVHF-NVVHGEWYRLVTSMFLHFNF 215
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS 216
EHI+ NM+ LY FG + LG +L +Y+ I G+
Sbjct: 216 EHILMNMLSLYIFGKIVESVLGSWKMLAIYLFAGIFGN 253
>gi|320589187|gb|EFX01649.1| rhomboid family protein [Grosmannia clavigera kw1407]
Length = 886
Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIV 182
++ V GL+ AN AV++LWR+ + N + I + + R +L+ + FSH H++
Sbjct: 661 ATTTVLGLVAANVAVWLLWRVPPAWRLLNRYMIVVP--ATPRPLSLVGAMFSHQKTSHLL 718
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMA 210
+N+ ++F G+ + +G L++Y A
Sbjct: 719 ANVAFVWFIGLRLHDEIGRAAFLEVYFA 746
>gi|336246507|gb|AEI27594.1| rhomboid-7-like protein, partial [Trichoplusia ni]
Length = 284
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 113 RWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPK-FMANNFTISLDNFLSGRLHTLITS 171
+W + LR S +V Y ++ AN VF WR+ + FM F + S R ++ S
Sbjct: 133 KWWNSLRD--SEKVFYPILAANVLVFGCWRVRSLQPFMVKYFCSNPSG--SSRCLPMLLS 188
Query: 172 AFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
FSH H+ +NM LY F + +LG E + +Y++ + S +Y L
Sbjct: 189 TFSHYSALHLAANMYVLYSFMPAAVASLGKEQFVAMYLSAGVVSSFASFLYKVLL 243
>gi|154288258|ref|XP_001544924.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150408565|gb|EDN04106.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 565
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADPKF-MANNFTISLDNFLSGRLHTLITSAFSHIDVEHI 181
++ V GLI N ++ +WR P + M N + IS+ + ++I S FSH + H+
Sbjct: 441 AAATVIGLIGTNVLIYAMWRAVPPAWRMLNRYFISVPLYPYS--VSIIGSIFSHQQIRHL 498
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+NM+ L+F G + LG L LY + S+ L H
Sbjct: 499 GANMLILWFIGTRLHEELGRADFLSLYFSSGAIASLTSLAAHVL 542
>gi|330816995|ref|YP_004360700.1| rhomboid family protein [Burkholderia gladioli BSR3]
gi|327369388|gb|AEA60744.1| rhomboid family protein [Burkholderia gladioli BSR3]
Length = 190
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 30/189 (15%)
Query: 128 YGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIG 187
+ LI+AN AVF++ + P + + F + + R+ L++ + H V H+ NM+G
Sbjct: 3 FALILANVAVFLVELLVGPSLV-DRFALWPATSEAFRVWQLLSYSLLHAGVVHLTYNMMG 61
Query: 188 LYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL----------------------VYHAF 225
L FG + R LG L LY+ + G + L V A+
Sbjct: 62 LALFGRDLERLLGSARFLVLYVCSVLAGGLAQLAVEQATSTAATPTVGASAGVFGVLAAY 121
Query: 226 LAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEGNSNISGS---AHLGG--AAVAALA 280
KR+ + + P P + +F+ G ++ ++ G S +G AHLGG A+A L
Sbjct: 122 AVRLPKRRVILLFPPIAMP-VWLFVTGYALVELLSGVSGDAGVAHFAHLGGMLGAIACLM 180
Query: 281 -WARIRRRG 288
W R G
Sbjct: 181 LWRPARASG 189
>gi|441521785|ref|ZP_21003443.1| rhomboid family protein [Gordonia sihwensis NBRC 108236]
gi|441458723|dbj|GAC61404.1| rhomboid family protein [Gordonia sihwensis NBRC 108236]
Length = 248
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 50/119 (42%), Gaps = 12/119 (10%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHT----------LITSAFSH 175
V YGLI N A F+ + +N + G L T L+TS F H
Sbjct: 28 VTYGLIAVNLAAFI--AVVLQAGGTSNLLLKSSIMQQGALVTGLGLENEYWRLLTSGFLH 85
Query: 176 IDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQG 234
+ H+ NMI LY G + R LGP L +Y+ G GGS + LA ++ G
Sbjct: 86 WSILHVAMNMISLYLIGADLERVLGPARYLAVYLIGLFGGSAAVVALGPELAATAGASG 144
>gi|290996734|ref|XP_002680937.1| predicted protein [Naegleria gruberi]
gi|284094559|gb|EFC48193.1| predicted protein [Naegleria gruberi]
Length = 219
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 130 LIIANTAVFMLWRI-ADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGL 188
LI N AVF+L I + M +S+ N GRLHTL+TS F+H D+ HI NM L
Sbjct: 28 LIALNVAVFVLSNIFLTREEMVTYLGVSVHNLREGRLHTLLTSMFTHSDLLHIFMNMYAL 87
Query: 189 YFFGMSIG---RTLGPEYLLKLYMAGAIGGSVFYL 220
G + R L P Y+ G +G SV+ L
Sbjct: 88 SQIGRMMPMTRRLLWPGYIF----CGLVGSSVYIL 118
>gi|355746857|gb|EHH51471.1| hypothetical protein EGM_10844 [Macaca fascicularis]
Length = 379
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 65/138 (47%), Gaps = 9/138 (6%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 129 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVLVFCLWRVPS 187
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S F+H + H+ +N L+ F SI LG E
Sbjct: 188 LQRTMIRYFT---SNPASKVLCSPMLLSTFNHFSLFHMAANTYVLWSFSSSIVNILGQEQ 244
Query: 204 LLKLYM-AGAIGGSVFYL 220
+ LY+ AG I V Y+
Sbjct: 245 FMALYLSAGVISNFVSYV 262
>gi|50547587|ref|XP_501263.1| YALI0B23364p [Yarrowia lipolytica]
gi|49647129|emb|CAG83516.1| YALI0B23364p [Yarrowia lipolytica CLIB122]
Length = 356
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 126 VVYGLIIANTAVFMLWRIADP---KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIV 182
++ +I N A F+LW+ +P +FM N + R LI SAFSH + H
Sbjct: 153 MISAIIGVNAAFFLLWKSGNPWIIRFMFENMLLKTGPGF--RPAQLIGSAFSHQEFWHFF 210
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMAGAI 213
NM LY FG+ + T+G + +YM +
Sbjct: 211 VNMFVLYQFGIPVAMTMGSAWFCHMYMTSVV 241
>gi|159185813|ref|NP_357018.2| hypothetical protein Atu3594 [Agrobacterium fabrum str. C58]
gi|159140947|gb|AAK89803.2| conserved hypothetical protein [Agrobacterium fabrum str. C58]
Length = 257
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 84/205 (40%), Gaps = 48/205 (23%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLD---------NFLSGRLH------TLIT 170
V GLI+ N V++ + AN + L +L L T++T
Sbjct: 19 VTIGLIVINVLVWLFTGVLASDVQANAAALGLGFIPAVVFDYAYLEPALQVVPDDLTVVT 78
Query: 171 SAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSS 230
AF H+D H+ NM+ L+ FG ++ LG L Y+ AI G++F H F+A +S
Sbjct: 79 YAFLHLDFWHLAGNMLFLWVFGDNVEDALGHFRFLIFYLVCAIAGALF----HGFVAPTS 134
Query: 231 K----------------------RQGMWVVDPSRTP-ALGVFL-----IGKDMLRIIEG- 261
+ R +WV+ R P L F+ IG+ L + G
Sbjct: 135 EGPLIGASGAVSGVVAAYFLLHPRVRVWVLVLMRIPLPLPAFIPLALWIGQQFLMLALGL 194
Query: 262 NSNISGSAHLGGAAVAALAWARIRR 286
N+S AH+GG A+ +RR
Sbjct: 195 EQNVSWGAHVGGILAGAIMVIFMRR 219
>gi|290976014|ref|XP_002670736.1| predicted protein [Naegleria gruberi]
gi|284084298|gb|EFC37992.1| predicted protein [Naegleria gruberi]
Length = 415
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 83/199 (41%), Gaps = 35/199 (17%)
Query: 126 VVYGLIIANTAVFMLWR--IADPKF---MANNFTISLDNFLSGRLHTLITSAFSHIDVEH 180
V++G+I N A+ ++ + P+F + + T+S+ N L R HTL+TS F H D H
Sbjct: 140 VIWGIIGLNCAMMLMVKGFKRSPRFHDFYSKHLTVSVHNLLKRRYHTLLTSTFVHGDWLH 199
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAI-----------------------GGSV 217
+ M GLY G +GP L Y+ + GS+
Sbjct: 200 LGFCMYGLYNMGSLTYDLMGPTTFLLFYLGAGMTASMGSSLLKLITKNYYQRSVGSSGSI 259
Query: 218 FYLVYHAFLAMSSKRQGMWVV---DP----SRTPALGVFLIGKDMLRIIEGNSNISGSAH 270
F +V+ ++ ++ M ++ D + T L ++ +G+ + I + H
Sbjct: 260 FAIVFAGLNVITFEKAKMNLIFLPDSWGGFNATYFLPLYFVGEILYNIFSRRVKLDTGGH 319
Query: 271 LGGAAVAALAWARIRRRGF 289
L GA LA ++ + +
Sbjct: 320 LSGALAGYLALEAMKNQSY 338
>gi|410925795|ref|XP_003976365.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like [Takifugu rubripes]
Length = 366
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 117 WLRQYGSSEVVYGLIIANTAVFMLWRI-ADPKFMANNFTISLDNFLSGRLHT-LITSAFS 174
WL V G+I +N VF+ WRI A + M FT N S L T +I S+FS
Sbjct: 151 WLSLSEGQRTVTGIIASNALVFLCWRIPALQRSMIRYFT---SNPASKTLCTPMILSSFS 207
Query: 175 HIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYM-AGAIGGSVFY 219
H H+ +NM L+ F S LG E + +Y+ AG I V Y
Sbjct: 208 HFSFLHMAANMYVLWSFSTSAVSMLGREQFMAVYLSAGVISSFVSY 253
>gi|161522943|ref|YP_001585872.1| rhomboid family protein [Burkholderia multivorans ATCC 17616]
gi|189348227|ref|YP_001941423.1| membrane protein [Burkholderia multivorans ATCC 17616]
gi|160346496|gb|ABX19580.1| Rhomboid family protein [Burkholderia multivorans ATCC 17616]
gi|189338365|dbj|BAG47433.1| uncharacterized membrane protein [Burkholderia multivorans ATCC
17616]
Length = 197
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 84/199 (42%), Gaps = 48/199 (24%)
Query: 128 YGLIIANTAVFMLWRIADPKFMANNFTISLDNFL------SGRLHT-------LITSAFS 174
Y LI+ N AVF IA+ A+ + + +D F G T L+T +
Sbjct: 3 YALILVNVAVF----IAE----ASGWPMLIDQFALWPPARPGAPATPGFHVWQLLTYSVL 54
Query: 175 HIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL-------------- 220
H + HI NM GLY FG + R LG L LY+A + G++ L
Sbjct: 55 HASLAHIAFNMFGLYMFGRDVERVLGRARFLALYLASVLAGAITQLAVIRALPPSDAPTV 114
Query: 221 -----VYHAFLAMS---SKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG----NSNISGS 268
V+ A +A + KR+ + + P PA +F G + ++ G S ++
Sbjct: 115 GASAGVFGALIAYAVLFPKRRVVLLFPPVPMPAW-LFATGYALTELLSGLSGDTSGVAHF 173
Query: 269 AHLGGAAVAALAWARIRRR 287
AHLGG A + A R+R
Sbjct: 174 AHLGGMLGALVCLAFWRKR 192
>gi|373461836|ref|ZP_09553572.1| hypothetical protein HMPREF9944_01836 [Prevotella maculosa OT 289]
gi|371950954|gb|EHO68805.1| hypothetical protein HMPREF9944_01836 [Prevotella maculosa OT 289]
Length = 319
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%)
Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
RL+ L+T F H +EHI NM L+ FGM + GP+ L Y+A IG +F
Sbjct: 53 RLYQLVTYMFMHASLEHIFFNMFALWMFGMVVENVWGPKKFLFYYIACGIGAGLF 107
>gi|396586115|ref|ZP_10486089.1| peptidase, S54 family [Actinomyces sp. ICM47]
gi|395546456|gb|EJG14095.1| peptidase, S54 family [Actinomyces sp. ICM47]
Length = 241
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 11/115 (9%)
Query: 115 RSWLRQ------YGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDN-FLSGRLHT 167
R W+RQ G+ V Y A A+ +L +A F + +++L FL R T
Sbjct: 8 RGWVRQASRAAQMGAPVVTY----AMMAICILMYLATWVFPSLKSSLALVPLFLMSRPWT 63
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
++T AF H + HI+ NM+ LY+ G +I LG L +Y+ A+GGS F L +
Sbjct: 64 ILTGAFLHGGLLHILFNMLSLYWVGRAIEPVLGWWRFLTVYLLSALGGSAFILAW 118
>gi|241895032|ref|ZP_04782328.1| S54 family peptidase [Weissella paramesenteroides ATCC 33313]
gi|241871750|gb|EER75501.1| S54 family peptidase [Weissella paramesenteroides ATCC 33313]
Length = 225
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 65/140 (46%), Gaps = 24/140 (17%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIG------------ 214
LIT+ F H+ H++ NMI LY+ G + + LG +Y + A IG
Sbjct: 62 LITAGFLHVTFMHLILNMITLYYVGRLLEQYLGSLKYFIGYITAIIIGSLNSLAFGSITA 121
Query: 215 ------GSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEGNSNISGS 268
G +F L FL +QG W+ ++ LG+F+I L I G +NI+ S
Sbjct: 122 ISAGASGGIFGLFGMIFLLGLLDKQGFWL---TQAKTLGIFVILS--LIPIFGGTNIAIS 176
Query: 269 AHLGGAAVAALAWARIRRRG 288
AH+GG A L + RRG
Sbjct: 177 AHIGGLASGFLIAPLLLRRG 196
>gi|383821590|ref|ZP_09976832.1| hypothetical protein MPHLEI_19664 [Mycobacterium phlei RIVM601174]
gi|383332932|gb|EID11395.1| hypothetical protein MPHLEI_19664 [Mycobacterium phlei RIVM601174]
Length = 248
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM 185
V Y LI N VF+L + P F F + G + L+TSAF H + HI+ NM
Sbjct: 38 VTYTLIAVNVLVFLLQAVL-PGF-TREFVLQPYAVADGEFYRLLTSAFLHYGLTHILFNM 95
Query: 186 IGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
LY G ++ LG + LY A+GGSV LVY
Sbjct: 96 WALYVVGPALEAALGRLRFVGLYALSALGGSV--LVY 130
>gi|189194767|ref|XP_001933722.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187979286|gb|EDU45912.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 268
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 14/115 (12%)
Query: 119 RQYGSSEVVYGLIIANTAVFML-----------WRIADPKFMANNFTISLDNFLSGRLHT 167
++ + V+Y LI N AVF +++ KFM +++L F +G
Sbjct: 56 QETANKAVLYALIGTNVAVFGYAMYLKQQAMQGYQLPFVKFM-QKMSLNLSEFQNGSYLP 114
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFG--MSIGRTLGPEYLLKLYMAGAIGGSVFYL 220
++T+ F+HID+ H+ SNM +YF G ++ + P L + + + GS+ YL
Sbjct: 115 ILTANFTHIDIGHVFSNMFSVYFLGSFLASAPPITPLRYLTIAIGSGVAGSIGYL 169
>gi|189220422|ref|YP_001941062.1| membrane associated serine protease [Methylacidiphilum infernorum
V4]
gi|189187280|gb|ACD84465.1| Membrane associated serine protease [Methylacidiphilum infernorum
V4]
Length = 240
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 38/165 (23%)
Query: 153 FTISLDNFLSGRLHTLITSAFSHIDVE--HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMA 210
F ++ D L GRL +T AF H +VE H+++N I +YF G + + LG L L++
Sbjct: 55 FALTTDGVLHGRLWEFLTYAFLHDEVEPPHLLTNAIVIYFLGNQLEKVLGHLRLALLFLG 114
Query: 211 GAIGGSVFY-----------------LVYHAFLAMSSKRQGMWV--------VDPSR--- 242
GAI G + + +V+ LA + Q +W+ +D +R
Sbjct: 115 GAISGGLGWYFFGGPMHEHGLIGASGVVFSFLLAFAFCLQEIWIRSIIFNQDIDSNRFIF 174
Query: 243 --------TPALGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAAL 279
+ VF+I + + + + + S +AHL GA L
Sbjct: 175 NPNFFLIIQVLVLVFVIFEALCVVFDIPTGSSHTAHLAGAIFGYL 219
>gi|420236439|ref|ZP_14740922.1| hypothetical protein A200_01381 [Parascardovia denticolens IPLA
20019]
gi|391880266|gb|EIT88760.1| hypothetical protein A200_01381 [Parascardovia denticolens IPLA
20019]
Length = 266
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 82/200 (41%), Gaps = 48/200 (24%)
Query: 117 WLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANN---------FTISLDNFLSGRLHT 167
WL ++ + +I+ VF W IA+ + N F + D L+ T
Sbjct: 35 WLYEWRNGGTNMTVILIALCVF-FWLIAEILYFTNRPALAVYESAFVLRSDQSLA-HPWT 92
Query: 168 LITSAFSH-IDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL------ 220
L+T F H ID+ HI NM+ LY G+S+ + LG L LY+ +G SV +L
Sbjct: 93 LLTVLFMHSIDISHIFFNMVSLYLAGLSLEKMLGHWEFLALYLVSGLGASVAFLLSALAS 152
Query: 221 ---------------VYHAFLAM------SSKRQGMWVVDPSRTPALGVFLIGKDMLRII 259
++ F AM S RQ W S LG+ L+ +
Sbjct: 153 GPSSAVASMIGASGAIFGLFGAMVVTALKSPGRQNAW----SMVVFLGLILVVPMLF--- 205
Query: 260 EGNSNISGSAHLGGAAVAAL 279
S ++ AHLGG AV AL
Sbjct: 206 --GSGVAWQAHLGGFAVGAL 223
>gi|124506221|ref|XP_001351708.1| rhomboid protease ROM9 [Plasmodium falciparum 3D7]
gi|23504636|emb|CAD51515.1| rhomboid protease ROM9 [Plasmodium falciparum 3D7]
Length = 488
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 55/139 (39%), Gaps = 31/139 (22%)
Query: 117 WLRQYGSSEVVYGLIIANTAVFMLWRIADP------------------------------ 146
+L Y S V Y LI+ + V+ LW IA+P
Sbjct: 259 FLYHYKLSPVTYTLILLHIFVYFLWNIAEPSRNSYNYYYINNFKHNNYNNKNKYTSPLLS 318
Query: 147 -KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLL 205
M F+ SL N +L+TL+T+ SH ++ + N I LY+ G ++ + +
Sbjct: 319 TDTMYKYFSCSLQNLKEKKLYTLVTNLISHNTIQSFLLNTISLYYIGTALEKIIQSRNFF 378
Query: 206 KLYMAGAIGGSVFYLVYHA 224
Y+ + S ++YH
Sbjct: 379 ITYLISGVLSSYIQILYHK 397
>gi|294786262|ref|ZP_06751516.1| rhomboid family protein [Parascardovia denticolens F0305]
gi|315225796|ref|ZP_07867584.1| rhomboid family membrane protein [Parascardovia denticolens DSM
10105 = JCM 12538]
gi|294485095|gb|EFG32729.1| rhomboid family protein [Parascardovia denticolens F0305]
gi|315119928|gb|EFT83060.1| rhomboid family membrane protein [Parascardovia denticolens DSM
10105 = JCM 12538]
Length = 266
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 61/141 (43%), Gaps = 37/141 (26%)
Query: 167 TLITSAFSH-IDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL----- 220
TL+T F H ID+ HI NM+ LY G+S+ R LG L LY+ +G SV +L
Sbjct: 92 TLLTVLFMHSIDISHIFFNMVSLYLAGLSLERMLGHWEFLALYLVSGLGASVAFLLSALA 151
Query: 221 ----------------VYHAFLAM------SSKRQGMWVVDPSRTPALGVFLIGKDMLRI 258
++ F AM S RQ W S LG+ L+ +
Sbjct: 152 SGPSSAVASMIGASGAIFGLFGAMVVTALKSPGRQNAW----SMVVFLGLILVVPMLF-- 205
Query: 259 IEGNSNISGSAHLGGAAVAAL 279
S ++ AHLGG AV AL
Sbjct: 206 ---GSGVAWQAHLGGFAVGAL 223
>gi|390444462|ref|ZP_10232239.1| rhomboid family protein [Nitritalea halalkaliphila LW7]
gi|389664469|gb|EIM75961.1| rhomboid family protein [Nitritalea halalkaliphila LW7]
Length = 323
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 31/140 (22%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
TL T F H + HI+ NM+ LY+FG+ + LG L +Y+ G + G+ YL+ +
Sbjct: 72 TLFTYMFLHEGIFHILFNMLFLYWFGLIVNEYLGSRKLANIYVLGGLAGAALYLLIYNIS 131
Query: 227 AM-----SSKRQ------------GMWVVDPSRTPALGVFLIGKDMLRII---------- 259
M SS R G +DP+RT L ++G ++ I
Sbjct: 132 PMFSESVSSSRMLGASAGVYAVVVGAATLDPNRTFQL--LILGPVKIKYIALFYVIIAFA 189
Query: 260 -EGNSNISGS-AHLGGAAVA 277
+N G AHLGGAA+
Sbjct: 190 NSAGANAGGELAHLGGAAMG 209
>gi|294941960|ref|XP_002783326.1| hypothetical protein Pmar_PMAR023448 [Perkinsus marinus ATCC 50983]
gi|239895741|gb|EER15122.1| hypothetical protein Pmar_PMAR023448 [Perkinsus marinus ATCC 50983]
Length = 698
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 14/103 (13%)
Query: 129 GLIIANTAVFMLWRIADPKF-------------MANNFTISLDNFLSGRLHTLITSAFSH 175
G+++ N AV+ WR F + NNFT S ++ GR H I FSH
Sbjct: 101 GMVLLNCAVYGAWRCTALSFRVTPRGGERLRRLLMNNFTCSWEDMAKGRWHQSILYGFSH 160
Query: 176 IDVEHIVSNMIGLYFFGMSI-GRTLGPEYLLKLYMAGAIGGSV 217
I H + N LYF G + R + +Y++G G+V
Sbjct: 161 ITFPHFIFNTWLLYFIGCPLYDRLRNEKEFGAVYVSGLFAGAV 203
>gi|431796162|ref|YP_007223066.1| hypothetical protein Echvi_0781 [Echinicola vietnamensis DSM 17526]
gi|430786927|gb|AGA77056.1| putative membrane protein [Echinicola vietnamensis DSM 17526]
Length = 263
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%)
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+T F H + H++SNM GL+ FG + + LGP+ LL L+M +G V Y Y AF
Sbjct: 50 LTYMFMHAGLWHLISNMFGLFIFGPLLEQFLGPKKLLTLWMVCGVGAGVLYSGYTAF 106
>gi|395212597|ref|ZP_10399870.1| rhomboid family protein [Pontibacter sp. BAB1700]
gi|394457114|gb|EJF11307.1| rhomboid family protein [Pontibacter sp. BAB1700]
Length = 305
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 29/148 (19%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T+I+ F+H HI+ NM+ LY+FG I LG + LL LY+ G I G + Y++ + +
Sbjct: 70 TIISYFFTHEGFLHIIFNMLNLYWFGQLIREYLGEKKLLSLYILGGIAGGLLYILSYNLI 129
Query: 227 AMSSKRQG----------------------------MWVVDPSRTPALGVFLIGKDMLRI 258
+ R + ++ P R + FL+ +
Sbjct: 130 PYFADRAAYAVMIGASASVLAVVVAAATLIPNYTFNLLIIGPVRIKYIAAFLVILSISGA 189
Query: 259 IEGNSNISGSAHLGGAAVAALAWARIRR 286
I N+ AHLGGA L +++R
Sbjct: 190 IGDNAG-GNIAHLGGALFGWLFIKQLQR 216
>gi|343429100|emb|CBQ72674.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 378
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 11/94 (11%)
Query: 126 VVYGLIIANTAVFMLW--------RIADPK---FMANNFTISLDNFLSGRLHTLITSAFS 174
V+Y +I N VF W + +DP+ FM+ NF N GR T++TS S
Sbjct: 174 VLYTIIALNVLVFGSWLYAAESMRKFSDPRMYLFMSKNFLSGYLNVQQGRWWTMLTSCVS 233
Query: 175 HIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLY 208
H ++H + NM+ L F + GP + LY
Sbjct: 234 HETLDHFLLNMVSLAFMAPPVLALTGPTTFVLLY 267
>gi|352081010|ref|ZP_08951888.1| Rhomboid family protein [Rhodanobacter sp. 2APBS1]
gi|389798976|ref|ZP_10201983.1| hypothetical protein UUC_14538 [Rhodanobacter sp. 116-2]
gi|351683051|gb|EHA66135.1| Rhomboid family protein [Rhodanobacter sp. 2APBS1]
gi|388444005|gb|EIM00132.1| hypothetical protein UUC_14538 [Rhodanobacter sp. 116-2]
Length = 205
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 48/96 (50%), Gaps = 11/96 (11%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTI---SLDNFLSGRLHT--LITSAFSHIDVEHIVSN 184
L+IAN AVF L +F+A F + +L SG ++TSAF H V HI+ N
Sbjct: 12 LLIANVAVFFL------QFVAGQFLLLHFALWPLGSGLFEVWQIVTSAFMHGGVTHIMFN 65
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL 220
M+ LY FG +I RT G Y AI S+ L
Sbjct: 66 MLALYMFGGTIERTFGAREFTVYYFVCAIVASLLQL 101
>gi|226290684|gb|EEH46168.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 581
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADPKF-MANNFTISLDNFLSGRLHTLITSAFSHIDVEHI 181
++ V GLI AN +F LWR P + M N + IS+ L +++ S FSH +H+
Sbjct: 362 AAATVIGLIGANFLIFALWRGFPPSWRMLNRYFISVP--LYPHSISVVGSVFSHQQFQHL 419
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+NM+ L+F G R LG L LY++ + S+ L H
Sbjct: 420 AANMLILWFVGT---RQLGRGDFLSLYLSSGVFASLTSLTVHVL 460
>gi|70995032|ref|XP_752282.1| rhomboid family protein [Aspergillus fumigatus Af293]
gi|66849917|gb|EAL90244.1| rhomboid family protein, putative [Aspergillus fumigatus Af293]
gi|159131038|gb|EDP56151.1| rhomboid family protein, putative [Aspergillus fumigatus A1163]
Length = 568
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 2/111 (1%)
Query: 115 RSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFS 174
R W ++ + ++ AN +F+LW+ M N + IS+ +++ + FS
Sbjct: 349 RMWPDMPPAAATAFAIMGANLTIFLLWKFPPAWRMLNRYFISVP--FKPHALSIVGNVFS 406
Query: 175 HIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
H +H+ NM+ L+F G + +G L L+MA GS+ L H
Sbjct: 407 HQQFKHMSLNMLMLWFIGTKLHDDIGRGNFLGLFMAAGAFGSMVSLTGHVL 457
>gi|257064883|ref|YP_003144555.1| membrane protein [Slackia heliotrinireducens DSM 20476]
gi|256792536|gb|ACV23206.1| uncharacterized membrane protein [Slackia heliotrinireducens DSM
20476]
Length = 267
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 130 LIIANTAVFMLWRI---ADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMI 186
LI+ N VF + + + N ++ + L G+ +TLITS F H + H++ NMI
Sbjct: 14 LIVINVVVFAVLEVLGMTQGYTLYNAGVLTTSSLLDGQYYTLITSMFLHGGLMHLLCNMI 73
Query: 187 GLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
+Y+ G I GP L +Y I G +
Sbjct: 74 TMYYIGTVIEDVFGPVRFLIIYFLSGIAGGL 104
>gi|431838821|gb|ELK00750.1| Presenilins-associated rhomboid-like protein, mitochondrial
[Pteropus alecto]
Length = 466
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 72/166 (43%), Gaps = 20/166 (12%)
Query: 126 VVYGLIIANTAVFMLWRIAD-PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVS 183
V G+I AN VF LWR+ + M FT N S L + ++ S FSH + H+ +
Sbjct: 235 TVTGIIAANVFVFCLWRVPSLQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAA 291
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYM-AGAIGGSVFYLV------YHAFLAMSSKRQGMW 236
NM L+ F SI LG E + +Y+ AG I V Y+ Y L S +
Sbjct: 292 NMYVLWSFSSSIVNILGQEQFMAMYLSAGVISSFVSYVCKVATGRYGPSLGASGAIMTVL 351
Query: 237 VVDPSRTPALGVFLIGKDMLRIIEGNSNI--------SGSAHLGGA 274
++ P + +I M GN +I +AHLGGA
Sbjct: 352 AAVCTKIPEGRLAIIFLPMFTFTAGNVSIFTMGWKFFDHAAHLGGA 397
>gi|326383928|ref|ZP_08205612.1| Rhomboid family protein [Gordonia neofelifaecis NRRL B-59395]
gi|326197387|gb|EGD54577.1| Rhomboid family protein [Gordonia neofelifaecis NRRL B-59395]
Length = 248
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 29/49 (59%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS 216
L+TS F H V HI NMI LY G + R LGP L +Y+ G +GGS
Sbjct: 78 LLTSGFLHWSVVHIAMNMISLYLIGADLERVLGPVRYLAVYLIGLLGGS 126
>gi|110636442|ref|YP_676649.1| rhomboid family membrane protein [Cytophaga hutchinsonii ATCC
33406]
gi|110279123|gb|ABG57309.1| rhomboid family membrane protein [Cytophaga hutchinsonii ATCC
33406]
Length = 264
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSG-RLHTLITSAFSHIDVEHIVSNMIGL 188
L+I N +F L I D + ++ I + G + ++T+ F H D H+ NM+GL
Sbjct: 11 LLIINVVLFALSYIFDNQLHLYHYLILHGVYAEGFAAYQIVTNIFMHADFRHLFGNMLGL 70
Query: 189 YFFGMSIGRTLGPEYLLKLYMAGAIGGSVFY 219
YFFG + LG + L LY +G + Y
Sbjct: 71 YFFGPLLEHFLGFKKFLILYFVCGVGAGLLY 101
>gi|300088399|ref|YP_003758921.1| rhomboid family protein [Dehalogenimonas lykanthroporepellens
BL-DC-9]
gi|299528132|gb|ADJ26600.1| Rhomboid family protein [Dehalogenimonas lykanthroporepellens
BL-DC-9]
Length = 191
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHI--DVEHIVSNMIG 187
LI N +F++ + P + +S F S R T+ITS F H HI+ NM+
Sbjct: 17 LIGVNVVIFLI-TLVSPG-IVEQLAVSQSAFTS-RPWTVITSMFVHSTSSYTHILFNMLA 73
Query: 188 LYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
LYFFG + +T+G +L +Y G I GS+F+++ F
Sbjct: 74 LYFFGSYLIQTIGERAMLAIYFIGGIVGSLFFIMLQPF 111
>gi|300742642|ref|ZP_07072663.1| rhomboid family protein [Rothia dentocariosa M567]
gi|300381827|gb|EFJ78389.1| rhomboid family protein [Rothia dentocariosa M567]
Length = 261
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLD-NFLSGRLHTLITSAFSHI--DVEHIV 182
V Y LI N V++L I ++ + F + D +G + ++TS F H D HIV
Sbjct: 75 VTYTLIGINVVVYLLQLIIPQYWVYSMFALKWDYTEFTGEYYRVLTSGFLHSQNDYSHIV 134
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS 216
NM+ LY FG+++ + +G L +Y+ +GGS
Sbjct: 135 MNMLSLYIFGIALEQMMGWWRYLLVYLLSIVGGS 168
>gi|327267316|ref|XP_003218448.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like [Anolis carolinensis]
Length = 355
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 62/135 (45%), Gaps = 7/135 (5%)
Query: 82 LSSQLRKSFFDGKVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFML 140
L ++++ F D + + P++ FR + + W + V G+I AN VF L
Sbjct: 105 LKARVQNYFEDARADWMDRIRPQKRL-KFRKQVKLWWDSLSRGQRAVSGIIAANVLVFCL 163
Query: 141 WRIAD-PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRT 198
WRI + M FT N S L + ++ S FSH H+ +NM L+ F SI
Sbjct: 164 WRIPSLHRIMITYFT---SNPASHALCSPMLLSTFSHFSFLHMAANMYVLWSFSTSIVSL 220
Query: 199 LGPEYLLKLYMAGAI 213
LG E + LY + +
Sbjct: 221 LGREQFMALYFSAGV 235
>gi|348523033|ref|XP_003449028.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like [Oreochromis niloticus]
Length = 378
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 66/145 (45%), Gaps = 15/145 (10%)
Query: 88 KSFFDGKVLFFRAQFPERSFASFRYRWRSWLRQYGSS-----EVVYGLIIANTAVFMLWR 142
+S+FD RA + E+ R R + Q+ +S V G+I AN VF WR
Sbjct: 120 QSYFDE----LRADWLEKVRPQKRGDIRKEINQWWNSLSEGQRTVTGIIAANAIVFCCWR 175
Query: 143 IAD-PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLG 200
+ +FM FT N S L + +I S FSH H+ +NM L+ F S LG
Sbjct: 176 VPSLQRFMIRYFTA---NPASRTLCSPMILSTFSHFSFFHMAANMYVLWSFSTSAVSMLG 232
Query: 201 PEYLLKLYM-AGAIGGSVFYLVYHA 224
E + +Y+ AG I V Y+ A
Sbjct: 233 REQFMAVYLSAGVISTFVSYVCKMA 257
>gi|347524076|ref|YP_004781646.1| Rhomboid family protein [Pyrolobus fumarii 1A]
gi|343460958|gb|AEM39394.1| Rhomboid family protein [Pyrolobus fumarii 1A]
Length = 254
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFT-----ISLDNFL---SGRLHTLITSAFSHIDVEHI 181
LI N A+F++ +A A+++ L FL LH L+T F H ++H+
Sbjct: 21 LIAVNVAIFIIGVLAPGLLGAHSYNEIVLKYGLVPFLLVNGVELHRLLTHMFLHGGLDHL 80
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSS--KRQGMWVVD 239
+ NM+ LY FG +I T+GP L Y+ G + F+++ A + + + VD
Sbjct: 81 LGNMLFLYIFGDNIEATMGPARYLAFYVIGGLVAVAFHVLSIAMMPPEALLNYRSFTGVD 140
Query: 240 PSRTPALG 247
P PA+G
Sbjct: 141 PWLVPAIG 148
>gi|311112557|ref|YP_003983779.1| rhomboid family protein [Rothia dentocariosa ATCC 17931]
gi|310944051|gb|ADP40345.1| rhomboid family protein [Rothia dentocariosa ATCC 17931]
Length = 261
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLD-NFLSGRLHTLITSAFSHI--DVEHIV 182
V Y LI N V++L I ++ + F + D +G + ++TS F H D HIV
Sbjct: 75 VTYTLIGINVVVYLLQLIIPQYWVYSMFALKWDYTEFTGEYYRVLTSGFLHSQNDYSHIV 134
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS 216
NM+ LY FG+++ + +G L +Y+ +GGS
Sbjct: 135 MNMLSLYIFGIALEQMMGWWRYLLVYLLSIVGGS 168
>gi|388583817|gb|EIM24118.1| hypothetical protein WALSEDRAFT_42280 [Wallemia sebi CBS 633.66]
Length = 216
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 126 VVYGLIIANTAVFMLWRIADP---KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIV 182
V G+I N+ +F W++ +P FM +F + D LHT++TS FSH + H+
Sbjct: 7 TVAGIIALNSVIFFAWQVPNPVLRSFMKRHFLHAHDT----PLHTMLTSVFSHRSIAHLG 62
Query: 183 SNMIGLYFFG 192
NM+ LY FG
Sbjct: 63 FNMLALYSFG 72
>gi|320041393|gb|EFW23326.1| conserved hypothetical protein [Coccidioides posadasii str.
Silveira]
Length = 575
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADPKF-MANNFTISLDNFLSGRLHTLITSAFSHIDVEHI 181
++ GLI AN VF++W+ P + M N + IS+ L + I S FSH + H+
Sbjct: 362 AAATAIGLIGANVTVFLMWKAFPPAWRMLNRYFISVP--LYPYSLSTIGSVFSHQQLRHL 419
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+NM L+F G + +G L LY++ + S+ L H
Sbjct: 420 GANMFILWFIGTRLHDEVGRGDFLALYLSSGVIASLTSLAAHVL 463
>gi|332298948|ref|YP_004440870.1| rhomboid family protein [Treponema brennaborense DSM 12168]
gi|332182051|gb|AEE17739.1| Rhomboid family protein [Treponema brennaborense DSM 12168]
Length = 213
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 86/185 (46%), Gaps = 33/185 (17%)
Query: 121 YGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTL---ITSAFSHID 177
Y +S ++ G+ N VF+L + PK ++ +SL+ R H +T F H
Sbjct: 16 YNASFIIIGV---NVLVFVLTYL-YPKLLSY---LSLNVVYVVRYHMYWQPLTYMFVHGS 68
Query: 178 VEHIVSNMIGLYFFGMSIGRTLG-PEYLLKLYMAGAIGGSVFYLVYHA-----FLAMSS- 230
HI+ NM+G++FFG+++ R +G E+LL + +G + G + + +Y+A FL +S
Sbjct: 69 FSHILFNMLGIFFFGVAVERAIGSKEFLLLYFCSGILCGVISFAIYYATGTFVFLMGASG 128
Query: 231 ---------------KRQGMWVVDPSRTPALGVFLIGKDML-RIIEGNSNISGSAHLGGA 274
R +W + P P L G ++ ++ ++ AHL G
Sbjct: 129 AIYALLLTYAVIFPRSRIFIWGILPIPAPLLIAIYAGIEIASQLFSLRDGVAHMAHLTGF 188
Query: 275 AVAAL 279
AVA L
Sbjct: 189 AVAWL 193
>gi|70726368|ref|YP_253282.1| hypothetical protein SH1367 [Staphylococcus haemolyticus JCSC1435]
gi|68447092|dbj|BAE04676.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 485
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 126 VVYGLIIANTAVFMLWRI-----ADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEH 180
+ YGLII N ++++ + +D K + + N + G + LITS F H + EH
Sbjct: 158 MTYGLIIINVLIWLIMILYLNHFSDVKLLDLGGLVHF-NVVHGEWYRLITSMFLHFNFEH 216
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS 216
I+ NM+ L+ FG + +GP +L +Y+ + G+
Sbjct: 217 ILMNMLSLFIFGKIVESIVGPLRMLGIYVISGLLGN 252
>gi|392564923|gb|EIW58100.1| hypothetical protein TRAVEDRAFT_167519 [Trametes versicolor
FP-101664 SS1]
Length = 446
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 126 VVYGLIIANTAVFMLWRIAD-PKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
+ + + N AVF+ WR+ FM +FT N LSGR +TL+TS FSH H+ N
Sbjct: 172 MCWAIGAVNCAVFLAWRVPRWGAFMMRSFT---HNPLSGRSYTLLTSTFSHEGFFHLAFN 228
Query: 185 MIGLYFFGMSIGRTL 199
+ L FG + G+ L
Sbjct: 229 CLALASFGSAAGQQL 243
>gi|198459459|ref|XP_001361382.2| GA21446 [Drosophila pseudoobscura pseudoobscura]
gi|198136697|gb|EAL25960.2| GA21446 [Drosophila pseudoobscura pseudoobscura]
Length = 349
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 6/129 (4%)
Query: 99 RAQFPERSFASFRYRWRSWLRQYGSSEVVYG-LIIANTAVFMLWRIADPKFMANNFTISL 157
R+ S++ + R + + E V+ + + N VF LWR+ P+ A T
Sbjct: 117 RSLVERSSWSQLKLEIRQYWDNLNTGEKVFAPICLVNLLVFGLWRV--PRLRATMITYFT 174
Query: 158 DNFLSGRLHT--LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGG 215
N + R+ + S FSH HI +NM L+ F + +LG E L LYM+ +
Sbjct: 175 SN-PAARIVCWPMFLSTFSHYSAMHIFANMYVLHSFANAAASSLGKEQFLALYMSAGVFS 233
Query: 216 SVFYLVYHA 224
S+ ++Y A
Sbjct: 234 SLISILYKA 242
>gi|389807333|ref|ZP_10204075.1| hypothetical protein UUA_06833 [Rhodanobacter thiooxydans LCS2]
gi|388444412|gb|EIM00524.1| hypothetical protein UUA_06833 [Rhodanobacter thiooxydans LCS2]
Length = 205
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHT--LITSAFSHIDVEHIVSNMIG 187
L+IAN AVF L +A +F+ +F +L SG ++TSAF H + HI NM+
Sbjct: 12 LLIANVAVFFLQYVAG-QFLLLHF--ALWPLGSGLFEVWQIVTSAFMHGSITHIAFNMLA 68
Query: 188 LYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL 220
LY FG +I RT G Y AI S+ L
Sbjct: 69 LYMFGGTIERTFGAREFTIYYFTCAIVASLLQL 101
>gi|293193637|ref|ZP_06609859.1| rhomboid family protein [Actinomyces odontolyticus F0309]
gi|292819869|gb|EFF78872.1| rhomboid family protein [Actinomyces odontolyticus F0309]
Length = 292
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
T++T AF H + HI+ NM+ LY+ G +I LG L LY+ A+GGS F LV+
Sbjct: 114 TVLTGAFLHGGIMHILFNMLSLYWVGRAIEPVLGRWRFLTLYLVSALGGSAFILVW 169
>gi|427787773|gb|JAA59338.1| Putative integral membrane prote [Rhipicephalus pulchellus]
Length = 309
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 14/142 (9%)
Query: 89 SFFDGKVL-FFRAQFPERSFASFRYRW---RSWLRQY---------GSSEVVYGLIIANT 135
SF V + R + R+ S R+ W R LRQ + V YGLI AN
Sbjct: 54 SFLGAAVWQYERMRREARAIVSQRWTWEPKRGSLRQQLNTWWHSIPEGNRVAYGLIAANA 113
Query: 136 AVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSI 195
VF+LWR+ + + + +S L + S FSH + H+ +NM+ L F +
Sbjct: 114 VVFLLWRVPQMEPIMLRYFVSHPASKPLCL-PMFLSTFSHHSLFHLAANMVVLNSFAPTA 172
Query: 196 GRTLGPEYLLKLYMAGAIGGSV 217
LG E L +Y++G + S+
Sbjct: 173 VALLGREQFLAMYVSGGVVSSL 194
>gi|363580109|ref|ZP_09312919.1| transmembrane rhomboid family protein [Flavobacteriaceae bacterium
HQM9]
Length = 306
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 83/202 (41%), Gaps = 39/202 (19%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADP---------KFMANNFTISLDNF-LSGRLHTLITSA 172
+ V+Y +II N VF+ + + + +F+ N F D F + TLIT
Sbjct: 13 QASVLYKVIIINVLVFVFFPVLNTIGFLFDTNLEFVKNWFAFPHDIFSYIYKPWTLITYG 72
Query: 173 FSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAG-AIGGSVFYLVYHAFLAMSSK 231
F H HI+ NM+ LYFFG L +Y G +GG V+ L Y+ F A S+
Sbjct: 73 FLHSGFRHILFNMLYLYFFGQVFLNIHNGRRFLNVYFLGIVVGGLVYMLSYNLFPAFSTV 132
Query: 232 RQGMWV-----------VDPSRTPA----------------LGVFLIGKDMLRIIEGNSN 264
+ V ++P + V L+ D++ I GN+
Sbjct: 133 HSSVLVGASAAVNAVMVAATVQSPNYSFKLMFLPFTFKLWWITVALLFFDVINIPNGNAG 192
Query: 265 ISGSAHLGGAAVAALAWARIRR 286
AHLGGA + L ++++
Sbjct: 193 -GHLAHLGGALIGYLYMTQLQK 213
>gi|162449650|ref|YP_001612017.1| hypothetical protein sce1379 [Sorangium cellulosum So ce56]
gi|161160232|emb|CAN91537.1| hypothetical protein sce1379 [Sorangium cellulosum So ce56]
Length = 565
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 51/112 (45%), Gaps = 22/112 (19%)
Query: 119 RQYGSSEVVYGLIIANTAVFM-------------LWRIADPKFMANNFTISLDNFLSGRL 165
R GS V L+IA A+ LWR+ AN S + G L
Sbjct: 174 RLRGSRRVTATLMIACAALLAVSYAFGSGTHEAALWRMG-----AN----SGEAVRHGEL 224
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
+ L+ SAF H D H+ NM+ L+ FG + LGP L LY A A+GGS+
Sbjct: 225 YRLLASAFLHADPMHLFVNMLALWSFGPMLEALLGPRRFLLLYGASALGGSL 276
>gi|328868857|gb|EGG17235.1| hypothetical protein DFA_08225 [Dictyostelium fasciculatum]
Length = 463
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 7/106 (6%)
Query: 120 QYGSSEVVYGLIIA-NTAVFMLWRIADPKFMA---NNFTISLDNFLSGRLHTLITSAFSH 175
Q S V G IIA N +++L + +P F A ++F S+ N S L L+ S FSH
Sbjct: 198 QIKESWKVLGTIIAINGIIYLL--LQNPAFFAKYGSHFLCSVSNVTSHPL-CLVLSNFSH 254
Query: 176 IDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
+ H + NM+GL+ FG S +G L LYM G + GS+ ++
Sbjct: 255 LQPLHFLFNMVGLWSFGQSAHDYMGTLPFLALYMGGGMVGSMSSII 300
>gi|358386936|gb|EHK24531.1| hypothetical protein TRIVIDRAFT_178163 [Trichoderma virens Gv29-8]
Length = 555
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 62/124 (50%), Gaps = 9/124 (7%)
Query: 111 RYRWRSWLRQYGSSEVVYGLIIA-NTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLI 169
RYR R+ +S G +I N V++ WRI + N + I + + R TL
Sbjct: 326 RYRL---FREVSTSHATVGALIGINALVYLGWRIPPLWALFNRYMIFV--VATVRPVTLF 380
Query: 170 TSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYM-AGAIG--GSVFYLVYHAFL 226
T+AFSH + H++ NM+ L+F G + +G L LY+ G++G GS+ +L
Sbjct: 381 TAAFSHTKLSHLLVNMVPLWFVGTCLHDEIGRADFLALYLGCGSMGFLGSLVTYTLRGWL 440
Query: 227 AMSS 230
++S
Sbjct: 441 TVTS 444
>gi|315427037|dbj|BAJ48654.1| rhomboid family protein [Candidatus Caldiarchaeum subterraneum]
gi|343485705|dbj|BAJ51359.1| rhomboid family protein [Candidatus Caldiarchaeum subterraneum]
Length = 227
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMA-NNFTISLDN----FLSGR-LHTLITSAFSHIDV 178
+V+ +I+AN V++ I +A N F +S L+G+ L +LI+ F H+D
Sbjct: 11 RLVFVIIVANIVVWLFINIVFTNQVALNRFLLSFGAVPFFILNGQNLLSLISYMFIHVDF 70
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA 224
HI NM L+ FG + LG L +Y + +VF+++Y+A
Sbjct: 71 LHIFLNMYALFLFGRDVEERLGSALFLVVYFLSGVVAAVFHMIYYA 116
>gi|397671735|ref|YP_006513270.1| peptidase, S54 family [Propionibacterium propionicum F0230a]
gi|395143082|gb|AFN47189.1| peptidase, S54 family [Propionibacterium propionicum F0230a]
Length = 272
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%)
Query: 158 DNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
+ SG ++T+AF+H+DV HI NM+ LY G + LG L LY+ A+ GS
Sbjct: 100 EGVASGAWWQVLTNAFTHLDVIHIAFNMVALYVLGPQLESVLGRARFLALYLVSALTGSA 159
Query: 218 FYLVYHA 224
+ + A
Sbjct: 160 AVVWFSA 166
>gi|153005609|ref|YP_001379934.1| rhomboid family protein [Anaeromyxobacter sp. Fw109-5]
gi|152029182|gb|ABS26950.1| Rhomboid family protein [Anaeromyxobacter sp. Fw109-5]
Length = 369
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Query: 126 VVYGLIIANTAVFML----WRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHI 181
V + L AN + F L ADP+ + + +G L+T+ F H H+
Sbjct: 24 VTWALAAANVSFFALVLSRGDAADPELLVRLGALERSRVWAGEPWRLVTAGFLHGGWHHL 83
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
N+ L G + R LGP L LY+A +G S L+ H
Sbjct: 84 AMNLGALLLAGPIVERGLGPARFLGLYLASVVGASAASLLAH 125
>gi|374604833|ref|ZP_09677783.1| hypothetical protein PDENDC454_17738 [Paenibacillus dendritiformis
C454]
gi|374389541|gb|EHQ60913.1| hypothetical protein PDENDC454_17738 [Paenibacillus dendritiformis
C454]
Length = 199
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 97/203 (47%), Gaps = 38/203 (18%)
Query: 111 RYR-WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFT-------ISLDNFLS 162
RY WRS+++Q+ + + LIIAN A+F++ + +N T + ++ + S
Sbjct: 5 RYENWRSYIKQFPVTTL---LIIANVAMFIVLALNGGS--QDNMTLFRFGAVLKMEPYAS 59
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIG-GSVFYL 220
L T+ F H +H++ NM L+ F + R LG +Y + ++G +G G+ YL
Sbjct: 60 -ETWRLATAMFLHSGFQHLLFNMFALFVFAPPMERILGSFKYAVLYLLSGLLGNGAALYL 118
Query: 221 ----------------VYHAFLAMSSKRQGMWVVD-PSRTPALGVFLIGKDMLRIIEGNS 263
VY A+L ++ ++ W +D SR + + IG +I G
Sbjct: 119 SEWGTLAVGASGAIYGVYGAYLFIAIFQR--WALDQASRKTIMIILGIGIVQSFVITG-- 174
Query: 264 NISGSAHLGGAAVAALAWARIRR 286
IS SAHLGG A L +A ++R
Sbjct: 175 -ISWSAHLGGLAAGFLLYAVLQR 196
>gi|375090618|ref|ZP_09736932.1| hypothetical protein HMPREF9708_01322 [Facklamia languida CCUG
37842]
gi|374565379|gb|EHR36650.1| hypothetical protein HMPREF9708_01322 [Facklamia languida CCUG
37842]
Length = 228
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
G + L+T+AF HI EH++ N + +YF G + R +G L L+M +IGG++F
Sbjct: 55 GEWYRLVTAAFIHIGFEHLLFNNLSIYFIGQDLERLMGHLRLFGLFMIASIGGNIF 110
>gi|441501523|ref|ZP_20983625.1| Rhomboid family protein [Fulvivirga imtechensis AK7]
gi|441434686|gb|ELR68128.1| Rhomboid family protein [Fulvivirga imtechensis AK7]
Length = 308
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 31/141 (21%)
Query: 167 TLITSAFSHI--DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA 224
TL+T AF+H D+ HI+ NM+ Y+F I LG + ++ LY+ GA+ G + YL+ +
Sbjct: 73 TLVTYAFAHSLSDIFHILFNMLVFYWFAKLIIEYLGSDKVISLYVLGALAGGIAYLMVYN 132
Query: 225 FLAMSSKRQG----------------------------MWVVDPSRTPALGVFLIGKDML 256
+ + R G + + P R + F I L
Sbjct: 133 LIPFYAARSGFGGMVGASAAVYAVVVAAATLIPNYTFFLLFLGPVRIKYIAAFYIVLSFL 192
Query: 257 RIIEGNSNISGSAHLGGAAVA 277
+ GN+ AHLGGA +
Sbjct: 193 GSV-GNNAGGNIAHLGGALIG 212
>gi|359789134|ref|ZP_09292090.1| rhomboid family protein [Mesorhizobium alhagi CCNWXJ12-2]
gi|359254992|gb|EHK57945.1| rhomboid family protein [Mesorhizobium alhagi CCNWXJ12-2]
Length = 256
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 82/205 (40%), Gaps = 47/205 (22%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMA--------------NNFTISLDNFLSGRLHTLITS 171
V +GLI N VF++ + +F + +S + + T IT
Sbjct: 19 VTFGLIGLNVLVFLITGLGSEEFTGAAVYGLGYIPSVAFDTVELSPELVIVPEDMTYITY 78
Query: 172 AFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSK 231
AF H D H+ NM+ L+ FG ++ LG L Y+ AIGG+ H ++A S+
Sbjct: 79 AFLHGDFFHLAGNMLFLWVFGDNVEDALGHFRFLVFYLLCAIGGAAV----HGWIAPDSQ 134
Query: 232 ----------------------RQGMWVVD----PSRTPA---LGVFLIGKDMLRIIEGN 262
R +WV+ P R PA LG+++ + + + G
Sbjct: 135 IPLIGASGAIAGIVAAYLILHPRVKIWVLAFGRIPLRIPAYLTLGLWIAFQFTMLALGGE 194
Query: 263 SNISGSAHLGGAAVAALAWARIRRR 287
IS + H GG A+ +RRR
Sbjct: 195 DQISWACHAGGIITGAVLVMILRRR 219
>gi|330836099|ref|YP_004410740.1| Peptidase S54, rhomboid domain-containing protein [Sphaerochaeta
coccoides DSM 17374]
gi|329748002|gb|AEC01358.1| Peptidase S54, rhomboid domain protein [Sphaerochaeta coccoides DSM
17374]
Length = 255
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 83/214 (38%), Gaps = 36/214 (16%)
Query: 102 FPERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANN-----FTIS 156
FP + A + + + Y + LII N VF+L P + +T
Sbjct: 24 FPLATLADMKNSFLNRRLGYSYANYTLRLIIVNILVFILTEYIYPSGYVLSGGQLYYTPG 83
Query: 157 LDNFLS--------GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP-EYLLKL 207
+ +L+ G + I+ F H V HI+ NM+GL+ FG + R +G E+LL
Sbjct: 84 VTYYLAMRPALVMKGYVWQFISYMFVHSGVSHILFNMLGLFIFGSMVERRIGSREFLLFY 143
Query: 208 YMAGAIGGSVFYLVYHA-------FLAMSSKRQGMWV---------------VDPSRTPA 245
+ G + G ++ Y A + S G+ + + P R P
Sbjct: 144 MLTGIVSGVFSFIAYMAAGTSAVSLVGASGVIYGIMLMFATFFPDARIFVFGIFPVRAPM 203
Query: 246 LGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAAL 279
L + ++ I G N++ HL G VA L
Sbjct: 204 LVIIYFAIELFSQIRGGGNVAHLTHLAGLGVAYL 237
>gi|15639966|ref|NP_219419.1| glpG protein, [Treponema pallidum subsp. pallidum str. Nichols]
gi|189026205|ref|YP_001933977.1| protein GlpG [Treponema pallidum subsp. pallidum SS14]
gi|338706929|ref|YP_004673697.1| rhomboid family protein [Treponema paraluiscuniculi Cuniculi A]
gi|378974570|ref|YP_005223178.1| rhomboid family protein [Treponema pallidum subsp. pertenue str.
Gauthier]
gi|378975627|ref|YP_005224237.1| rhomboid family protein [Treponema pallidum subsp. pallidum DAL-1]
gi|378982479|ref|YP_005230786.1| rhomboid family protein [Treponema pallidum subsp. pertenue str.
CDC2]
gi|408502828|ref|YP_006870272.1| rhomboid family protein [Treponema pallidum subsp. pallidum str.
Mexico A]
gi|3323304|gb|AAC65937.1| glpG protein, putative [Treponema pallidum subsp. pallidum str.
Nichols]
gi|189018780|gb|ACD71398.1| possible protein GlpG [Treponema pallidum subsp. pallidum SS14]
gi|335344990|gb|AEH40906.1| rhomboid family protein [Treponema paraluiscuniculi Cuniculi A]
gi|374678898|gb|AEZ59190.1| rhomboid family protein [Treponema pallidum subsp. pertenue str.
CDC2]
gi|374679967|gb|AEZ60258.1| rhomboid family protein [Treponema pallidum subsp. pertenue str.
Gauthier]
gi|374681027|gb|AEZ61317.1| rhomboid family protein [Treponema pallidum subsp. pallidum DAL-1]
gi|408476191|gb|AFU66956.1| rhomboid family protein [Treponema pallidum subsp. pallidum str.
Mexico A]
Length = 208
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 81/192 (42%), Gaps = 29/192 (15%)
Query: 120 QYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH-TLITSAFSHIDV 178
+Y + V L++AN AVF++ + + + L + R++ + T F H V
Sbjct: 9 RYSYTNVTLSLVLANGAVFVITSLVESLGIYLALVPGLVRY--HRMYWQIFTYQFVHSGV 66
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYM-------AGAIG----------------G 215
H++ NM+GL FFG +I + +G +L Y+ AGA G
Sbjct: 67 WHLLFNMLGLVFFGQTIEKKMGSSEMLLFYLLVGTLCGAGACAAYLCVGRLNVLLLGASG 126
Query: 216 SVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEGNSNISGSAHLGGAA 275
S+F +++ + + +W V P P L V I ++ + N+S HL G
Sbjct: 127 SIFAILFLFSVMFPTALIYLWGVIPIPAPLLIVGYILFEIFDLFFSRDNVSHLTHLLG-- 184
Query: 276 VAALAWARIRRR 287
AW IR R
Sbjct: 185 -VLFAWGYIRIR 195
>gi|256847477|ref|ZP_05552923.1| rhomboid family protein [Lactobacillus coleohominis 101-4-CHN]
gi|256716141|gb|EEU31116.1| rhomboid family protein [Lactobacillus coleohominis 101-4-CHN]
Length = 220
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 161 LSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL 220
L G+ L+T+ F HI ++H+V NM+ LYF GM + G +L +Y+ + G++F +
Sbjct: 49 LQGQWWRLLTAGFLHIGIQHLVINMLTLYFLGMYVETLFGHWRMLVIYLVSVVSGNLFSM 108
Query: 221 VYH 223
V
Sbjct: 109 VMQ 111
>gi|448521119|ref|XP_003868430.1| Pcp1 protein [Candida orthopsilosis Co 90-125]
gi|380352770|emb|CCG25526.1| Pcp1 protein [Candida orthopsilosis]
Length = 354
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 118 LRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISL-DNFLSGRLHTLITSAFSHI 176
L+QY + +V+G+I N AVF++WR+ + + I DN S TL+ SAFSH
Sbjct: 148 LKQYPQA-LVWGIIAINGAVFLMWRVPQLQRFTMQYAILFKDNIQSP--WTLLWSAFSHQ 204
Query: 177 DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMS 229
H NM+ F +S+ LG +Y+ A+ S L FL S
Sbjct: 205 SFAHFFINMLCFQSFAVSLVGILGVSNFTIMYLNAAVLSSFASLAIPMFLGSS 257
>gi|397576168|gb|EJK50102.1| hypothetical protein THAOC_30966 [Thalassiosira oceanica]
Length = 527
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Query: 114 WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGR-LHTLITSA 172
W++ G + ++ + + N AV+ L + P+ A S D L GR LH LIT
Sbjct: 195 WQTAEPTMGETTLIGKIFLVNIAVYGLQTLM-PQLTAWGAKRS-DLLLEGRQLHRLITPV 252
Query: 173 FSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
F H + H+VSN L G ++ GP L Y+ + G++F V
Sbjct: 253 FLHGGIGHLVSNSYSLKSMGNNVEGAFGPARTLATYLVSGVAGNIFSAV 301
>gi|328862958|gb|EGG12058.1| putative presenilin associated, rhomboid-like protein [Melampsora
larici-populina 98AG31]
Length = 464
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 125 EVVYGLIIANTAVFMLWRIAD-PKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVS 183
++ L +AN +F+LW++ +M +NFT N LSG+ HT++TS FS H
Sbjct: 223 QICLVLALANLPIFLLWQLPRMTSYMTSNFT---HNPLSGKSHTILTSVFSQASALHFGF 279
Query: 184 NMIGLYFFGMSIGRTL 199
NM+ LY G + +L
Sbjct: 280 NMMALYSIGSTAHDSL 295
>gi|440750148|ref|ZP_20929392.1| Rhomboid family protein [Mariniradius saccharolyticus AK6]
gi|436481189|gb|ELP37370.1| Rhomboid family protein [Mariniradius saccharolyticus AK6]
Length = 307
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 27/147 (18%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH--- 223
T++T F H + HI+ NM+ LY+FGM + LG L +Y+ G I G + YL +
Sbjct: 72 TVMTYMFFHEGIFHILFNMLFLYWFGMLLHEYLGSRKLANIYILGGIAGGLLYLTMYNIS 131
Query: 224 ----------AFLAMSSKRQGMWVVDPSRTPALGVF--LIGKDMLRII------------ 259
L S+ + V + +P F L+G ++ I
Sbjct: 132 PFFAEVLPIAKMLGASAGVYAIVVAAATLSPNTTFFLLLLGPVKIKYIAIFYVFIAFANS 191
Query: 260 EGNSNISGSAHLGGAAVAALAWARIRR 286
GN+ AHLGGAA+ L ++R+
Sbjct: 192 AGNNAGGELAHLGGAALGYLYVIQLRK 218
>gi|365760608|gb|EHN02317.1| Pcp1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 287
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 125 EVVYGLIIANTAVFMLWRIADP-KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVS 183
+VY L+ N AVF LW++ KF+ + D+ S ++I SAFSH + H+
Sbjct: 144 NLVYALLGINVAVFGLWQLPKCWKFLQKYMLLQKDHITSK--FSIIGSAFSHQEFWHLGM 201
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
NM+ L+ FG+S+ LG + + G F
Sbjct: 202 NMLALWSFGVSLSTMLGASNFFPCILIVLLQGPCF 236
>gi|343085187|ref|YP_004774482.1| rhomboid family protein [Cyclobacterium marinum DSM 745]
gi|342353721|gb|AEL26251.1| Rhomboid family protein [Cyclobacterium marinum DSM 745]
Length = 263
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF-LA 227
+T F H D H+ SNM GL+ FG + + LGP+ LL L+M +G V Y Y A+ +
Sbjct: 50 VTYMFMHADFWHLFSNMFGLFIFGPLLEQFLGPKKLLILWMVCGVGSGVLYSGYVAYNMG 109
Query: 228 MSSKRQGMWVVDPS 241
+ R + DP
Sbjct: 110 QLNDRIEAFSEDPD 123
>gi|416935319|ref|ZP_11933944.1| uncharacterized membrane protein [Burkholderia sp. TJI49]
gi|325525203|gb|EGD03072.1| uncharacterized membrane protein [Burkholderia sp. TJI49]
Length = 197
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 83/199 (41%), Gaps = 48/199 (24%)
Query: 128 YGLIIANTAVFMLWRIADPKFMANNFTISLDNFL-----------SGRLHT--LITSAFS 174
Y LI+ N AVF IA+ A+ + + +D F + H L+T +
Sbjct: 3 YALILVNVAVF----IAE----ASGWPMLIDQFALWPPARPGAPATPDFHVWQLLTYSVL 54
Query: 175 HIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL-------------- 220
H + HI NM GLY FG + LG L LY+A + G++ L
Sbjct: 55 HASLAHIAFNMFGLYMFGRDVEHVLGRARFLALYLASVLAGAITQLAVIRALPPSDAPTV 114
Query: 221 -----VYHAFLAMS---SKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG----NSNISGS 268
V+ A +A + KR+ + + P PA +F G + ++ G S ++
Sbjct: 115 GASAGVFGALIAYAVLFPKRRVVLLFPPVPMPAW-LFATGYALTELLSGLSGDTSGVAHF 173
Query: 269 AHLGGAAVAALAWARIRRR 287
AHLGG A + A R+R
Sbjct: 174 AHLGGMLGALVCLAFWRKR 192
>gi|315658175|ref|ZP_07911047.1| rhomboid family protein [Staphylococcus lugdunensis M23590]
gi|315496504|gb|EFU84827.1| rhomboid family protein [Staphylococcus lugdunensis M23590]
Length = 489
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 124 SEVVYGLIIAN-----TAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDV 178
S Y LI N + + +L R ++ K + + N + G + LITS F H +
Sbjct: 160 SPATYSLITINIVIWLSMILLLNRFSNIKLLEMGGLVHF-NVVHGEWYRLITSMFLHFNF 218
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS 216
EHI+ NM+ L+ FG + +GP +L LY+ + G+
Sbjct: 219 EHILMNMLSLFIFGKIVEAIIGPMKMLILYIISGLFGN 256
>gi|449547817|gb|EMD38784.1| hypothetical protein CERSUDRAFT_112528 [Ceriporiopsis subvermispora
B]
Length = 433
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 40/59 (67%), Gaps = 4/59 (6%)
Query: 134 NTAVFMLWRIADPK-FMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFF 191
N AVF+LWRI + FM ++FT + LSG+ +T++TS FSH + H+ ++I LY+F
Sbjct: 183 NIAVFLLWRIPRLQSFMTSHFT---HDPLSGKAYTMLTSLFSHKNPLHMAISLISLYYF 238
>gi|289550680|ref|YP_003471584.1| membrane peptidase [Staphylococcus lugdunensis HKU09-01]
gi|385784306|ref|YP_005760479.1| rhomboid family protein [Staphylococcus lugdunensis N920143]
gi|418413982|ref|ZP_12987198.1| hypothetical protein HMPREF9308_00363 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
gi|289180212|gb|ADC87457.1| Putative membrane peptidase [Staphylococcus lugdunensis HKU09-01]
gi|339894562|emb|CCB53844.1| rhomboid family protein [Staphylococcus lugdunensis N920143]
gi|410877620|gb|EKS25512.1| hypothetical protein HMPREF9308_00363 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
Length = 485
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS 216
N + G + LITS F H + EHI+ NM+ L+ FG + +GP +L LY+ + G+
Sbjct: 195 NVVHGEWYRLITSMFLHFNFEHILMNMLSLFIFGKIVEAIIGPMKMLILYIISGLFGN 252
>gi|110636443|ref|YP_676650.1| hypothetical protein CHU_0016 [Cytophaga hutchinsonii ATCC 33406]
gi|110279124|gb|ABG57310.1| conserved hypothetical protein [Cytophaga hutchinsonii ATCC 33406]
Length = 290
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 167 TLITSAFSHIDVE--HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA 224
TLIT AFSH HI NM+GLY+FG I +G L+ LY GA+ G YL+ +
Sbjct: 66 TLITYAFSHDTPNPFHIFFNMLGLYWFGGLIREYVGGRRLISLYFIGALVGVALYLICYN 125
Query: 225 FLAMSSKR 232
++ +R
Sbjct: 126 YIPFYMER 133
>gi|418635278|ref|ZP_13197657.1| peptidase, S54 family [Staphylococcus lugdunensis VCU139]
gi|374842000|gb|EHS05452.1| peptidase, S54 family [Staphylococcus lugdunensis VCU139]
Length = 485
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS 216
N + G + LITS F H + EHI+ NM+ L+ FG + +GP +L LY+ + G+
Sbjct: 195 NVVHGEWYRLITSMFLHFNFEHILMNMLSLFIFGKIVEAIIGPMKMLILYIISGLFGN 252
>gi|255939660|ref|XP_002560599.1| Pc16g02270 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585222|emb|CAP92897.1| Pc16g02270 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 575
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM 185
V ++ AN AV +LW+ P + N + F L +I S FSH H+ +NM
Sbjct: 360 TVGAIVAANVAVTLLWKYIPPAWKLLNRYFVIVPFYPSSL-GMIGSTFSHQTWRHLGTNM 418
Query: 186 IGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
+ L G + +G L +Y A + GSVF L L
Sbjct: 419 MVLGLMGTRVHDEIGRGNFLAIYFASGVMGSVFSLTRSVIL 459
>gi|378973504|ref|YP_005222110.1| rhomboid family protein [Treponema pallidum subsp. pertenue str.
SamoaD]
gi|374677829|gb|AEZ58122.1| rhomboid family protein [Treponema pallidum subsp. pertenue str.
SamoaD]
Length = 208
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 81/192 (42%), Gaps = 29/192 (15%)
Query: 120 QYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH-TLITSAFSHIDV 178
+Y + V L++AN AVF++ + + + L + R++ + T F H V
Sbjct: 9 RYSYTNVTLSLVLANGAVFVITSLVESLGIYLALVPGLVRY--HRMYWQIFTYQFVHSGV 66
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYM-------AGAIG----------------G 215
H++ NM+GL FFG +I + +G +L Y+ AGA G
Sbjct: 67 WHLLFNMLGLVFFGQTIEKKMGSSEMLLFYLLVGTLCGAGACAAYLCVGRLNVLLLGASG 126
Query: 216 SVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEGNSNISGSAHLGGAA 275
S+F +++ + + +W V P P L V I ++ + N+S HL G
Sbjct: 127 SIFAILFLFSVMFPTALIYLWGVIPIPAPLLIVGYILFEIFDLFFSRDNLSHLTHLLG-- 184
Query: 276 VAALAWARIRRR 287
AW IR R
Sbjct: 185 -VLFAWGYIRIR 195
>gi|327405503|ref|YP_004346341.1| Rhomboid family protein [Fluviicola taffensis DSM 16823]
gi|327321011|gb|AEA45503.1| Rhomboid family protein [Fluviicola taffensis DSM 16823]
Length = 295
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 23/134 (17%)
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA---- 224
+TS FSH + H++ NMI LYF G + ++ +Y+ G I G +F ++ H
Sbjct: 75 VTSIFSHFEFFHLLFNMIFLYFIGGIFKQFFSDRRMVHVYVWGGIVGGIFEVIAHQVTNQ 134
Query: 225 --------------FLAMSSKRQGMWV----VDPSRTPALGVFLIGKDMLRIIEGNSNIS 266
F+AM+ R + V + P + + + +G ++L++ + + I+
Sbjct: 135 YPVVIGASGSIMALFIAMAVYRPNIEVRLFGIIPVKLYIIALIYLGSEILQMTQIDG-IA 193
Query: 267 GSAHLGGAAVAALA 280
AH+GGA + L+
Sbjct: 194 HFAHIGGALIGLLS 207
>gi|420172602|ref|ZP_14679101.1| rhomboid family protein [Staphylococcus epidermidis NIHLM067]
gi|394241763|gb|EJD87172.1| rhomboid family protein [Staphylococcus epidermidis NIHLM067]
Length = 486
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 76/171 (44%), Gaps = 18/171 (10%)
Query: 126 VVYGLIIANTAVFM-----LWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEH 180
+ Y LI+ N +++ L R +D K + + N + G + LI+S F H + EH
Sbjct: 159 ITYTLILINIVIWLCMILYLNRFSDVKLLEVGGLVHF-NVVHGEWYRLISSMFLHFNFEH 217
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA-----------FLAMS 229
I+ NM+ L+ FG + +G +L +Y+ + G+ L ++ F +
Sbjct: 218 ILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIG 277
Query: 230 SKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG-NSNISGSAHLGGAAVAAL 279
S M++ +G LI +L + SNI+ AHLGG + L
Sbjct: 278 SIFVIMYLSKNFNKKMIGQLLIALVVLIVFSLFMSNINIMAHLGGFIIGVL 328
>gi|156402832|ref|XP_001639794.1| predicted protein [Nematostella vectensis]
gi|156226924|gb|EDO47731.1| predicted protein [Nematostella vectensis]
Length = 294
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%)
Query: 149 MANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLY 208
+ +F S N GRL+TL+TS F+H ++H + NM L G + R G ++ L +
Sbjct: 57 LGKHFAFSPRNLEDGRLYTLVTSIFNHGGMDHFIGNMSILIPVGHDVHRRFGRKHFLAAF 116
Query: 209 MAGAIGGSVFYLVYHAF 225
+ G + G++ L + +
Sbjct: 117 IGGGVAGNLAQLAEYVY 133
>gi|390600031|gb|EIN09426.1| hypothetical protein PUNSTDRAFT_66729 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 297
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 115 RSWLRQYGSSEVVYGLIIANTAVFMLWRIADPK-FMANNFTISLDNFLSGRLHTLITSAF 173
+ WL + + + NTA++M W++ + M +FT N LSG +T++TS F
Sbjct: 32 QPWLDANEGRRTCWKICMVNTAIWMAWQVPRLQPLMQRHFT---HNPLSGLSYTILTSMF 88
Query: 174 SHIDVEHIVSNMIGLYFFGMSIG 196
SH + H+++N + L FG + G
Sbjct: 89 SHRSLLHLIANCMALSSFGSAAG 111
>gi|340914661|gb|EGS18002.1| hypothetical protein CTHT_0060150 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 590
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSH-IDVEHI 181
++ V LI+AN V++ W I P + N LD + R H ++TS FSH + V+H+
Sbjct: 373 AAATVGALILANVLVWIAWHIP-PCWPILNRHFLLDVAVP-RAHGVLTSMFSHQVLVKHL 430
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
+ NM+GL+ FG+ + +G L Y + + + L Y
Sbjct: 431 LPNMVGLWVFGVGLHDDVGRGNFLATYFSSGVLAMLGTLCY 471
>gi|11498616|ref|NP_069844.1| hypothetical protein AF1011 [Archaeoglobus fulgidus DSM 4304]
gi|2649584|gb|AAB90231.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
Length = 330
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 118 LRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTIS--LDNFLSGRLHTLITSAFSH 175
L +YG++ V LII F+ I P M F + LD L+ LITS F H
Sbjct: 128 LMKYGANNTV--LIICTILFFI--SIVAPYEMVEIFALHPRLDVLLAMPWQ-LITSMFLH 182
Query: 176 IDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
++ H NM L FFG + R LG L+++ + G+V Y+ Y
Sbjct: 183 VEFWHFFVNMFVLLFFGTELERRLGDRKYLEIFFVSGLAGNVGYIAY 229
>gi|154508338|ref|ZP_02043980.1| hypothetical protein ACTODO_00835 [Actinomyces odontolyticus ATCC
17982]
gi|153797972|gb|EDN80392.1| peptidase, S54 family [Actinomyces odontolyticus ATCC 17982]
Length = 231
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
T++T AF H + HI+ NM+ LY+ G +I LG L LY+ A+GGS F LV+
Sbjct: 53 TVLTGAFLHGGIMHILFNMLSLYWVGRAIEPVLGRWRFLTLYLVSALGGSAFILVW 108
>gi|402223532|gb|EJU03596.1| hypothetical protein DACRYDRAFT_64551 [Dacryopinax sp. DJM-731 SS1]
Length = 389
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
Query: 130 LIIANTAVFMLWRIADPK-FMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGL 188
++ N A+FM W+I + FMA++F L + LSG+ +TL+TSAFSH + H+ NM L
Sbjct: 157 IVCLNAAIFMGWQIPILRHFMASHF---LHSPLSGKSYTLLTSAFSHQGLVHMGFNMFAL 213
Query: 189 YFFGMSIGRTLGPE 202
FG + LG +
Sbjct: 214 VSFGSAAFDWLGTQ 227
>gi|326334502|ref|ZP_08200713.1| rhomboid family protein [Capnocytophaga sp. oral taxon 338 str.
F0234]
gi|325693271|gb|EGD35199.1| rhomboid family protein [Capnocytophaga sp. oral taxon 338 str.
F0234]
Length = 277
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 81/195 (41%), Gaps = 36/195 (18%)
Query: 126 VVYGLIIANTAVFM-------LWRIADPKFMANNFTISLD-NFLSGRLHTLITSAFSHID 177
VVY L++ ++ LW+ P F+ + F +S + L G+ TL+T +F H
Sbjct: 24 VVYILLVGYLCGYLFPSIIAFLWQTTVP-FIRDMFALSQSFSALMGKPWTLLTYSFFHTS 82
Query: 178 VEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQ---- 233
H NM+ LYF G+ P+ L +Y G I G +F+++ + + S+R+
Sbjct: 83 FGHWFFNMVMLYFVGILFMNLFPPKRFLGIYAMGIIMGGLFFILTYQLFPVFSQREDFLL 142
Query: 234 -------GMWVVDPSRTP---------------ALGVFLIGKDMLRIIEGNSNISGSAHL 271
+ + + TP LG LI D+ I N+ AHL
Sbjct: 143 GASAGIMAVLIFLSTYTPFYRIYLFRIFSLPLWILGALLIIIDLASIPISNAG-GHIAHL 201
Query: 272 GGAAVAALAWARIRR 286
GGA L ++R
Sbjct: 202 GGALAGCLYALYLKR 216
>gi|256425736|ref|YP_003126389.1| rhomboid family protein [Chitinophaga pinensis DSM 2588]
gi|256040644|gb|ACU64188.1| Rhomboid family protein [Chitinophaga pinensis DSM 2588]
Length = 280
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGL 188
LI+ N AV ++ + N ++ +D L + + LITS F H+ H+ NM+ L
Sbjct: 11 LIVVNIAVS--YKGLKDRSFFNKYSFEVDRILIEKDYKRLITSGFLHVSWMHLFFNMVSL 68
Query: 189 YFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
+ F S+ LGP L LY A +GG++ L+ H
Sbjct: 69 FLFSNSLEVKLGPTAYLTLYFASLVGGNLLSLLIH 103
>gi|433650924|ref|YP_007295926.1| putative membrane protein [Mycobacterium smegmatis JS623]
gi|433300701|gb|AGB26521.1| putative membrane protein [Mycobacterium smegmatis JS623]
Length = 287
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM 185
+ Y LI N +F+L + P + ++ + + +G + L+TSAF H + H++ NM
Sbjct: 76 ITYTLIAINVVMFVL-QTVSPN-LQSDLVLRSPSVATGDWYRLVTSAFLHYGIAHLLFNM 133
Query: 186 IGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
LY G S+ LG LY A+GGSV LVY
Sbjct: 134 YALYIMGPSLESWLGRLRFSALYAMSALGGSV--LVY 168
>gi|335357178|ref|ZP_08549048.1| rhomboid family integral membrane protein [Lactobacillus animalis
KCTC 3501]
Length = 224
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNF----LSGRLHTLITSAFSHIDVEHI 181
V YGLI N VF+ ++ A N + + G L L T F HI +EH+
Sbjct: 10 VTYGLIAVNLLVFIGMTLSGGTQNAVNLIAWGAKYNPLIIQGELWRLFTPMFIHIGLEHL 69
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
N++ LYF G+ + + G L LY+ +GG++
Sbjct: 70 ALNLLTLYFLGVQLEQLFGKWRFLALYLISGVGGNIL 106
>gi|323135805|ref|ZP_08070888.1| Rhomboid family protein [Methylocystis sp. ATCC 49242]
gi|322398896|gb|EFY01415.1| Rhomboid family protein [Methylocystis sp. ATCC 49242]
Length = 280
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 14/117 (11%)
Query: 118 LRQYGSSEVVYGLIIANTAVFMLW---RIADPKFMANNFTI---------SLDNFLSGRL 165
+R+ V + LI N VF+L DP + F + +L +++ G
Sbjct: 11 MRRLRRPIVNWTLIALNVVVFLLVYSEAFGDPLTLIRGFAVIPRVLFGEATLADWIVGPP 70
Query: 166 H--TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL 220
TL+TS F H V HI SNM+ LY FG ++ +G + L Y++ +G VFY+
Sbjct: 71 APLTLLTSLFFHSSVLHIASNMLFLYVFGDNVEDAMGSLHYLLFYLSCGVGAGVFYV 127
>gi|308198056|ref|XP_001386804.2| predicted protein [Scheffersomyces stipitis CBS 6054]
gi|149388834|gb|EAZ62781.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 325
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 124 SEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHT---LITSAFSHIDVEH 180
S VY LI N VF++WR+ + + I + + RL T ++ S+FSH H
Sbjct: 124 SNFVYALIALNGGVFLMWRVPALSRFVHKYAIVVKD----RLQTNWAMLGSSFSHQSFMH 179
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAI 213
+ NM L FG S+ T+G LY+ A+
Sbjct: 180 LFVNMFVLQSFGTSLAVTVGVANFTVLYLNAAV 212
>gi|358398676|gb|EHK48027.1| hypothetical protein TRIATDRAFT_47554 [Trichoderma atroviride IMI
206040]
Length = 517
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 5/108 (4%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM 185
V LI N V++ WR+ + N + I + + R TL T+AFSH + H++ NM
Sbjct: 299 TVAALIGINALVYLGWRVPPLWRLFNKYMIFV--VATVRPVTLFTAAFSHTKLSHLLVNM 356
Query: 186 IGLYFFGMSIGRTLGPEYLLKLYM-AGAIG--GSVFYLVYHAFLAMSS 230
+ L+F G + +G L LY+ G++G GS+ +L ++S
Sbjct: 357 VPLWFVGTCLHDEIGRADFLALYLGCGSVGFLGSLITYTLRGWLTVTS 404
>gi|359406802|ref|ZP_09199455.1| peptidase, S54 family [Prevotella stercorea DSM 18206]
gi|357554895|gb|EHJ36590.1| peptidase, S54 family [Prevotella stercorea DSM 18206]
Length = 310
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHT--LITSAFSHIDVEHIVS 183
+ L+I N VF+ + + N + L FL+ H L T F+H HI
Sbjct: 7 ITKNLLIVNVVVFLATYLFRTMGVDLNNVLGLHFFLAPDFHIYQLFTYMFAHGGFSHIFF 66
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
NM L+ FG + RT GP+ L Y+ +G +F
Sbjct: 67 NMFALWMFGCIVERTWGPKKFLTYYIVCGVGAGLF 101
>gi|392866144|gb|EAS28756.2| rhomboid family protein [Coccidioides immitis RS]
Length = 575
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADPKF-MANNFTISLDNFLSGRLHTLITSAFSHIDVEHI 181
++ GLI AN VF++W+ P + M N + IS+ L + I S FSH + H+
Sbjct: 362 AAATAIGLIGANVTVFLMWKAFPPAWRMLNRYFISVP--LYPYSLSTIGSVFSHQQLRHL 419
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+NM L+F G + +G L LY++ S+ L H
Sbjct: 420 GANMFILWFIGTRLHDEVGRGDFLALYLSSGAIASLTSLAAHVL 463
>gi|299529356|ref|ZP_07042794.1| Rhomboid-like protein [Comamonas testosteroni S44]
gi|298722605|gb|EFI63524.1| Rhomboid-like protein [Comamonas testosteroni S44]
Length = 500
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 80/192 (41%), Gaps = 36/192 (18%)
Query: 130 LIIANTAVFMLWRIADPKFMANN--------FTISLDNFLSGRLHTLITSAFSHIDVEHI 181
+I AN W+ A F + +++S +N + TS F H H+
Sbjct: 116 VITANHPRHAQWQAARAAFAPHEPRGSFTERWSMSYENGAGWQPLQAFTSIFLHGSTSHL 175
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA--------MSSKRQ 233
+ NM+ L+ FG ++ LG L Y+ G IG S+F L+++A + S
Sbjct: 176 LGNMVFLFLFGFTLELALGAFTYLAFYVIGGIGASLFALMFYASMGGYGLGASGAISALM 235
Query: 234 GMWVV-----------------DPSRTPALGVFLI--GKDMLRIIEGNSNISGSAHLGGA 274
M+ V + +R PAL + + G ++L+ + G ++ AH GG
Sbjct: 236 AMYAVMYRMRRIRFFYMLLFYFNYARWPALIMLPVWMGVELLQHLLGGKQVAYMAHFGGL 295
Query: 275 AVAA-LAWARIR 285
A L W+ +R
Sbjct: 296 LTGALLMWSYMR 307
>gi|310793927|gb|EFQ29388.1| rhomboid family protein [Glomerella graminicola M1.001]
Length = 566
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 133 ANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFG 192
AN V + WR+ N + + + R T++T+ FSH + H+ +NM+GL+F G
Sbjct: 353 ANALVSLAWRVPPLWRFLNRYFVLVHGM--PRAVTMLTANFSHSSLGHLATNMVGLWFVG 410
Query: 193 MSIGRTLGPEYLLKLYMA-GAIG--GSVFYLVYHAFLAMSS 230
++ +G L +Y+A GA+G GS+ L +S+
Sbjct: 411 TALHDEVGRANFLAIYLASGAVGLLGSLTVFTLRGLLTVST 451
>gi|406876561|gb|EKD26088.1| hypothetical protein ACD_79C01375G0003 [uncultured bacterium]
Length = 189
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 22/176 (12%)
Query: 127 VYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMI 186
V+ L+ N +F+L K +N + N R + L+TS F H++ H+ N+
Sbjct: 12 VFTLVTINIVIFILM-----KLFSNELSFLFLNTSDVRWYQLLTSIFCHLEYSHLSGNLF 66
Query: 187 GLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV--YHA--FLAMSSKRQGMWVVD--- 239
LY FG I G ++ Y+ IG ++F LV +H+ ++ S G++ +
Sbjct: 67 FLYIFGRLIEEQEGTMGVVVSYLICGIGANLFTLVLNFHSGYYIGASGAIFGLFTISMLI 126
Query: 240 ---PSRTPALGVFLIGKDMLRII-------EGNSNISGSAHLGGAAVAALAWARIR 285
P T + +F++ +L I + NIS +H+ G+ V L +R
Sbjct: 127 KFKPRFTNIIEIFILTPFVLGYIITELKSLNNSDNISHESHIYGSIVGVLLIIGLR 182
>gi|258650339|ref|YP_003199495.1| rhomboid family protein [Nakamurella multipartita DSM 44233]
gi|258553564|gb|ACV76506.1| Rhomboid family protein [Nakamurella multipartita DSM 44233]
Length = 292
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
SG L+TS F H ++ H+ +NM+ LY+ G+ + R LG +L +Y+ +G SV L+
Sbjct: 108 SGEYWRLLTSGFLHGNLVHLATNMLSLYWLGIPLERILGRGRMLTIYLISLLGASVSVLL 167
Query: 222 YHAFLAMSSKRQG 234
+ A ++++ G
Sbjct: 168 FSAPVSLTIGASG 180
>gi|302669450|ref|YP_003829410.1| peptidase [Butyrivibrio proteoclasticus B316]
gi|302393923|gb|ADL32828.1| membrane-associated peptidase rhomboid family [Butyrivibrio
proteoclasticus B316]
Length = 216
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 6/130 (4%)
Query: 119 RQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDV 178
+ Y SS V L+I N +F+L + P + G H L+T+ F H D+
Sbjct: 18 KIYKSSYVTIALVIINAVIFVLGSMFFPFIYTIGVMYTPSVLQDGEYHRLVTAMFLHQDI 77
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVV 238
H+ +NM+ L G I LG +YMA I G++ + Y + + WV
Sbjct: 78 NHLFNNMMILLLVGAIIENYLGHVAYGIMYMAAGIFGNLLSMAYEV------RNEVTWVS 131
Query: 239 DPSRTPALGV 248
+ +G+
Sbjct: 132 LGASGAVMGI 141
>gi|317504626|ref|ZP_07962593.1| rhomboid family protein [Prevotella salivae DSM 15606]
gi|315664247|gb|EFV03947.1| rhomboid family protein [Prevotella salivae DSM 15606]
Length = 319
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 10/102 (9%)
Query: 126 VVYGLIIANTAVFML-WRIADPKFMANNFTISLDN------FLSG--RLHTLITSAFSHI 176
V L++ N F+L W + FM I L+N FL+ + + L T F H
Sbjct: 7 VTKNLLLINVIAFILMWLLQRVSFMGGT-PIDLNNIFGLHFFLATDFQFYQLFTYMFMHA 65
Query: 177 DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
++EHI NM L+ FGM + GP L Y+ IG +F
Sbjct: 66 NLEHIFFNMFALWMFGMVVEHVWGPRRFLFYYIICGIGAGIF 107
>gi|383767403|ref|YP_005446385.1| rhomboid family protein [Phycisphaera mikurensis NBRC 102666]
gi|381387672|dbj|BAM04488.1| rhomboid family protein [Phycisphaera mikurensis NBRC 102666]
Length = 310
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 72/187 (38%), Gaps = 48/187 (25%)
Query: 130 LIIANTAVFMLWRI---------ADP----KFMANNFTISLDNFLSGRLHTLITSAFSHI 176
LI+ N AVF+L I ADP F N L+ + +T F H
Sbjct: 37 LIVINAAVFLLAGIFGGSARADGADPLRWGYFSVNKAIWGLE------VWRFLTYQFLHA 90
Query: 177 DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA------------ 224
D HI+ NMIGLYFFG + R LG L Y+ + G+V V
Sbjct: 91 DFFHILFNMIGLYFFGPLLERELGRRAFLAFYLLCGVSGAVIATVLGTLFGPTIMHPDAP 150
Query: 225 FLAMSSKRQGMWVVDPSRTPALGVFL----------------IGKDMLRIIEGNSNISG- 267
+ S G+ R P L V L +G L ++ G+ N G
Sbjct: 151 LVGASGALFGILAAAAVRFPHLRVQLLIPPIPMSMRTMALVFLGIAALSVLVGSRNAGGE 210
Query: 268 SAHLGGA 274
+AHLGGA
Sbjct: 211 AAHLGGA 217
>gi|343085188|ref|YP_004774483.1| rhomboid family protein [Cyclobacterium marinum DSM 745]
gi|342353722|gb|AEL26252.1| Rhomboid family protein [Cyclobacterium marinum DSM 745]
Length = 308
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 17/111 (15%)
Query: 122 GSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHI 181
G SE Y II+ F + A P+F+ +TI I+ F H HI
Sbjct: 44 GGSETTYRSIIS----FFMMPAAIPQFLMQPWTI-------------ISYMFLHEGFLHI 86
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKR 232
+ NM+ LY+FG+ + LG L+ LY+ G I G + Y+V + S R
Sbjct: 87 IFNMLFLYWFGLLVQEYLGSRKLVNLYILGGIAGGLLYMVLYNIAPYFSDR 137
>gi|348500832|ref|XP_003437976.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like [Oreochromis niloticus]
Length = 387
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 70/175 (40%), Gaps = 27/175 (15%)
Query: 125 EVVYGLIIANTAVFMLWRIAD-PKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVS 183
+ V G+I N AV WRI + M FT + + R + S+FSH + H+V+
Sbjct: 164 KTVTGIIALNAAVLCCWRIPSMQRSMLKYFTSNPAS--KTRCLPMALSSFSHYSIIHMVA 221
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYM-AGAIGGSVFYLVYHAF------LAMSSKRQGMW 236
NM L+ F I LG E L +Y+ AG + V Y A L S +
Sbjct: 222 NMYVLWIFSSGIVSLLGKEQFLAVYLSAGVVSTMVSYTCKAATGRLYPSLGASGAVMAVL 281
Query: 237 VVDPSRTPA--LGVF---------------LIGKDMLRIIEGNSNISGSAHLGGA 274
S+ P LG+ L+ D ++ G +AHLGGA
Sbjct: 282 AAICSKMPEAKLGIIFLPMVTFTAGTALKVLVAADTAGLLLGWRLFDHAAHLGGA 336
>gi|334880686|emb|CCB81452.1| integral membrane protein [Lactobacillus pentosus MP-10]
gi|339636895|emb|CCC15711.1| integral membrane protein [Lactobacillus pentosus IG1]
Length = 227
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 6/106 (5%)
Query: 115 RSWLRQYGSSEVVYGLIIANTAVFML-WRIADPKFMANNFTISLDN--FLSGRLHTLITS 171
R W + ++++ G+ +A VF++ W + D + N + +N +G+ IT
Sbjct: 6 RWWQMEPAITQIILGITVA---VFLIEWLMGDGATLVFNAIGAKNNQAIAAGQWWRFITP 62
Query: 172 AFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
F H+ + HI N + +YF GM I G +L LYM G I G++
Sbjct: 63 MFLHMGLTHIALNGVVIYFMGMQIEAMYGHWRMLALYMLGGISGNI 108
>gi|222151439|ref|YP_002560595.1| hypothetical protein MCCL_1192 [Macrococcus caseolyticus JCSC5402]
gi|222120564|dbj|BAH17899.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 482
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 7/100 (7%)
Query: 124 SEVVYGLIIANTAVFMLWRIA----DPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVE 179
S + Y +I+ N +F+L I + + + + ++ NF+ G + +ITS F H DV+
Sbjct: 158 SPLTYLIILLNVVIFLLMSIVQHIHEVEMIIDKGGLTHFNFVHGDYYRVITSIFIHFDVQ 217
Query: 180 HIVSNMIGLYFFGMSIGRTLGP--EYLLKLYMAGAIGGSV 217
H++ NM+ L FG + L P +YL ++ G IG +
Sbjct: 218 HLLYNMMTLLIFG-KLVEYLYPRWQYLCIYFIGGIIGNLI 256
>gi|390943212|ref|YP_006406973.1| hypothetical protein Belba_1611 [Belliella baltica DSM 15883]
gi|390416640|gb|AFL84218.1| putative membrane protein [Belliella baltica DSM 15883]
Length = 309
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
+++T F H + HI+ NM+ LY+FGM + LG L LY+ G I G++FY++ +
Sbjct: 72 SILTYMFLHEGIFHILFNMLFLYWFGMLVNEYLGSRKLANLYILGGIAGALFYVLMY 128
>gi|187920241|ref|YP_001889272.1| rhomboid family protein [Burkholderia phytofirmans PsJN]
gi|187718679|gb|ACD19902.1| Rhomboid family protein [Burkholderia phytofirmans PsJN]
Length = 198
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 82/191 (42%), Gaps = 35/191 (18%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSG----RLHTLITSAFSHIDVEHIVSNM 185
L++ NTA F++ ++ DP + F + SG + L+T +F H + H+ NM
Sbjct: 5 LVVLNTAAFLIEQL-DPDRLIGLFALWPATSSSGVPAFHIWQLLTYSFLHANFMHLAVNM 63
Query: 186 IGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL----------------------VYH 223
GLY FG + T+G +L+ LY + G++ L +
Sbjct: 64 FGLYMFGRDVESTIGRAHLVLLYFTSVLSGALLQLAVGLADVTVRAPAIGASAGVFGLLV 123
Query: 224 AFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG----NSNISGSAHLG---GAAV 276
+ + +R+ + + P PA +F +L ++ G S I+ AH+G GAAV
Sbjct: 124 GYALLFPRRRVILLFPPVPMPAW-LFATCYGVLELVLGVAGAQSGIAHFAHVGGMLGAAV 182
Query: 277 AALAWARIRRR 287
L W R R
Sbjct: 183 LLLHWMRAPSR 193
>gi|288682824|ref|NP_001165755.1| presenilin associated, rhomboid-like [Xenopus (Silurana)
tropicalis]
gi|157422963|gb|AAI53676.1| Unknown (protein for MGC:180490) [Xenopus (Silurana) tropicalis]
Length = 353
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 7/137 (5%)
Query: 88 KSFFDGKVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD- 145
KS+ D + + +FR + W + V G+I+ N VF LWR+
Sbjct: 105 KSYLDDIQADWLEKLRPPKHGAFRKQVNEWWNSLSEGQKTVSGIIVLNGLVFCLWRVPSL 164
Query: 146 PKFMANNFTISLDNFLSGRLH-TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYL 204
+ M FT N S L +I S FSH + H+ +NM L+ F SI LG E
Sbjct: 165 QRTMIRYFT---SNPASRSLCLPMIFSTFSHFSLFHMAANMYVLWSFSTSIVSILGKEQF 221
Query: 205 LKLYM-AGAIGGSVFYL 220
L +Y+ AG + + Y+
Sbjct: 222 LAVYLSAGTVSTFISYV 238
>gi|399928108|ref|ZP_10785466.1| rhomboid family protein [Myroides injenensis M09-0166]
Length = 215
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 21/134 (15%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV---- 217
SG ++ +++S F H+D H + NM+ LYFFG + +GP Y L +Y I G++
Sbjct: 41 SGEIYRIVSSGFLHVDWMHFMFNMLTLYFFGDLVLYAVGPIYFLLIYFVSMIVGNMITYQ 100
Query: 218 FY-----------------LVYHAFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIE 260
FY ++Y + + G++ + P + + + + + +
Sbjct: 101 FYQNVPNYRAVGASGAIMGILYASIMMNPDMMLGVFFIIPMPSYVFAILYLLYSVYGMRK 160
Query: 261 GNSNISGSAHLGGA 274
+ I SAH+GGA
Sbjct: 161 QSDGIGHSAHIGGA 174
>gi|213407032|ref|XP_002174287.1| presenilins-associated rhomboid-like protein [Schizosaccharomyces
japonicus yFS275]
gi|212002334|gb|EEB07994.1| presenilins-associated rhomboid-like protein [Schizosaccharomyces
japonicus yFS275]
Length = 298
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 7/110 (6%)
Query: 118 LRQYGSSEVVYGLIIANTAVFMLWRIAD----PKFMANNFTISLDNFLSGRLHTLITSAF 173
+ Q S ++V ++ N AV +LW++ +F+ + +TI N + L +++ SAF
Sbjct: 76 IHQPSSKKIVLSIVGVNAAVLLLWKLRPYGKVVRFL-DRYTIM--NPVRTTLPSMLLSAF 132
Query: 174 SHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
SH H NMI Y F S+ +GP L + + ++ + +H
Sbjct: 133 SHQSNWHFAVNMIAFYSFAPSVVDVMGPNQFLAFFTTSVLASNLVSIFHH 182
>gi|86743118|ref|YP_483518.1| rhomboid-like protein [Frankia sp. CcI3]
gi|86569980|gb|ABD13789.1| Rhomboid-like protein [Frankia sp. CcI3]
Length = 275
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 13/174 (7%)
Query: 119 RQYGSSEVVYGLIIA----NTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFS 174
RQ ++++ GL +A A + R +F + I + + + L+T+AF
Sbjct: 63 RQGLVTQILIGLCVAAYILQGAPGLTGRGTFNRFTGDFAMIGIRIAADDQYYRLLTAAFL 122
Query: 175 HIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF-YLVYHAFLAMSSKRQ 233
H V HI+ NM LY G + LG L L++AGA+GG+ Y++ F
Sbjct: 123 HAGVLHILFNMYALYLLGFQLEAILGRARYLALFVAGALGGNTLSYVLGDGFTVSVGAST 182
Query: 234 GMW--------VVDPSRTPALGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAAL 279
++ + R + + ++ L I SNI HLGG AV A+
Sbjct: 183 AIFAFFAAYYIIARRLRVDSRQILIVLGINLAITFSFSNIDKWGHLGGLAVGAI 236
>gi|239814367|ref|YP_002943277.1| rhomboid family protein [Variovorax paradoxus S110]
gi|239800944|gb|ACS18011.1| Rhomboid family protein [Variovorax paradoxus S110]
Length = 492
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%)
Query: 146 PKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLL 205
P +++ D + T IT+AF H D H++ NM+ L+ FG S+ LG L
Sbjct: 132 PASFTQRWSLDHDKGAEPKPWTWITAAFLHADTGHLLGNMLFLFLFGFSVELALGRGTYL 191
Query: 206 KLYMAGAIGGSVF 218
Y+ GA G S+
Sbjct: 192 AFYLLGAAGSSLL 204
>gi|444429847|ref|ZP_21225028.1| rhomboid family protein [Gordonia soli NBRC 108243]
gi|443889267|dbj|GAC66749.1| rhomboid family protein [Gordonia soli NBRC 108243]
Length = 268
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 23/166 (13%)
Query: 129 GLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGL 188
GL + N+ +F+ W + P G+ L TS F H+ V HI NM+ L
Sbjct: 64 GLQVLNSPLFLDWSLYKPAIA------------DGQYWRLFTSGFLHLSVIHIAGNMLAL 111
Query: 189 YFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQG---------MWVVD 239
Y G + LG + +Y+ GGS F +++ + A+++ G + V+
Sbjct: 112 YILGRDLELALGIPRYVAVYVTSLFGGSAFVMLFESDTAVTAGASGAIYGLMGAILVVLL 171
Query: 240 PSR-TPALGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARI 284
+R +P + +IG +++ I IS AH+GG A+A A I
Sbjct: 172 KARLSPVPVLSIIGLNIVLSIA-IPGISIWAHIGGLVFGAVATAGI 216
>gi|425736005|ref|ZP_18854315.1| Rhomboid family protein [Brevibacterium casei S18]
gi|425478939|gb|EKU46122.1| Rhomboid family protein [Brevibacterium casei S18]
Length = 208
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 168 LITSAFSHIDVE--HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
L+T A H H+++NMIGL+FFG + R LG L +Y+ GAIGGSV L+
Sbjct: 36 LLTVALVHEQPSPIHLLANMIGLFFFGSFVERALGRGRFLAVYLLGAIGGSVMVLL 91
>gi|417860785|ref|ZP_12505840.1| hypothetical protein Agau_L100167 [Agrobacterium tumefaciens F2]
gi|338821189|gb|EGP55158.1| hypothetical protein Agau_L100167 [Agrobacterium tumefaciens F2]
Length = 257
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 84/205 (40%), Gaps = 48/205 (23%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLD---------NFLSGRLH------TLIT 170
V GLI+ N V++ + AN + L +L L T++T
Sbjct: 19 VTIGLIVVNVLVWLFTGVLASDVQANAAALGLGFIPAVVFDYAYLEPALQVVPDDLTVMT 78
Query: 171 SAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSS 230
AF H+D H+ NM+ L+ FG ++ LG L Y+A AI G++ H F+A +S
Sbjct: 79 YAFLHLDFWHLAGNMLFLWVFGDNVEDALGHFRFLIFYIACAIAGALL----HGFVAPTS 134
Query: 231 K----------------------RQGMWVVDPSRTP-ALGVFL-----IGKDMLRIIEG- 261
+ + +WV+ R P L F+ IG+ L + G
Sbjct: 135 EGPLIGASGAVSGVVAAYFLLHPKVRVWVLVFMRIPLPLPAFIPLALWIGQQFLMLALGL 194
Query: 262 NSNISGSAHLGGAAVAALAWARIRR 286
N+S AH+GG A+ +RR
Sbjct: 195 EENVSWGAHVGGILAGAIMVIFMRR 219
>gi|383809416|ref|ZP_09964936.1| peptidase, S54 family [Rothia aeria F0474]
gi|383447768|gb|EID50745.1| peptidase, S54 family [Rothia aeria F0474]
Length = 257
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNF-LSGRLHTLITSAFSHI--DVE 179
+ + Y LI N V++L I ++ N F D S + ITS F H D
Sbjct: 72 NPNITYTLIGINVVVYLLQWIIPNYWVYNEFAYKADWVAYSHEYYRAITSGFLHSQNDPS 131
Query: 180 HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS--VFYLVYHAFLAMSS 230
H++ NM+ LY FG +I + +G L +Y+ +GGS V+ L HA + +S
Sbjct: 132 HLLLNMVSLYLFGAAIEKMIGNWRYLLVYLTAILGGSAAVWVLEPHAVVVGAS 184
>gi|307943483|ref|ZP_07658827.1| rhomboid family protein [Roseibium sp. TrichSKD4]
gi|307773113|gb|EFO32330.1| rhomboid family protein [Roseibium sp. TrichSKD4]
Length = 226
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 64/149 (42%), Gaps = 29/149 (19%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL------ 220
++ T AF H DV H+ NM+ L+ FG +I LG Y+ A G +FY
Sbjct: 75 SIFTYAFLHGDVWHLGGNMLFLWVFGDNIEDALGHVRYFFFYLLCAAAGGLFYTLANFGS 134
Query: 221 -------------VYHAFLAMSSKRQGMWVVDPSRTP-------ALGVFLIGKDMLRIIE 260
V A+L + K +WV+ R P LG F +G + +
Sbjct: 135 DVPLVGASGAVAGVVGAYLVLHPKVM-IWVLALGRFPVPIPAGLVLG-FWVGYQVFNAVF 192
Query: 261 G-NSNISGSAHLGGAAVAALAWARIRRRG 288
G S+I+ SAH+GG L +RRRG
Sbjct: 193 GPESHIAWSAHIGGILAGCLLVVFMRRRG 221
>gi|118591392|ref|ZP_01548790.1| hypothetical protein SIAM614_27133 [Stappia aggregata IAM 12614]
gi|118436064|gb|EAV42707.1| hypothetical protein SIAM614_27133 [Stappia aggregata IAM 12614]
Length = 230
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 27/148 (18%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL------ 220
+++T +F H H++ NM+ L+ FG ++ +G L Y+ AI G + Y
Sbjct: 75 SVVTYSFLHGSFMHLIGNMLFLWVFGDNVEDAVGHLRYLLFYLLCAIAGGLAYASLDVNS 134
Query: 221 -------------VYHAFLAMSSKRQGMWVVDPSRTP-------ALGVFLIGKDMLRIIE 260
V A+L M R +WV+ R P LG +++ + + +I
Sbjct: 135 DVPLIGASGAVSGVVAAYL-MLHPRVKVWVLALGRIPLRLSAVWLLGGWIVYQIVNAVIA 193
Query: 261 GNSNISGSAHLGGAAVAALAWARIRRRG 288
+S+I+ AH+GG AL RRRG
Sbjct: 194 SDSDIAWIAHIGGMVAGALLIVFFRRRG 221
>gi|228476169|ref|ZP_04060877.1| rhomboid family protein [Staphylococcus hominis SK119]
gi|228269992|gb|EEK11472.1| rhomboid family protein [Staphylococcus hominis SK119]
Length = 485
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 124 SEVVYGLIIANTAVFMLWRI-----ADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDV 178
S + Y LI N +++ +I +D K + + N + G + LITS F H +
Sbjct: 156 SPMTYTLIAINVLIWLYMKIYLNHFSDIKLLDVGGLVHF-NVVHGEWYRLITSMFLHFNF 214
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS 216
EHI+ NM+ L+ FG + +GP +L +Y+ + G+
Sbjct: 215 EHILMNMLSLFIFGKIVETIVGPYKMLGIYLISGLFGN 252
>gi|427390838|ref|ZP_18885244.1| hypothetical protein HMPREF9233_00747 [Actinobaculum massiliae
ACS-171-V-Col2]
gi|425732574|gb|EKU95382.1| hypothetical protein HMPREF9233_00747 [Actinobaculum massiliae
ACS-171-V-Col2]
Length = 221
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 57/131 (43%), Gaps = 25/131 (19%)
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAM 228
I+SAF+H H++ NM L+ GM + R +G + LY AIGG+VF L L
Sbjct: 56 ISSAFAHSGFWHLIFNMYALWLMGMFLERAIGRWRFVMLYALAAIGGNVFVL-----LTA 110
Query: 229 SSKRQGMWV-VDPSRTPALGVF-------------------LIGKDMLRIIEGNSNISGS 268
S G W V + G+F +IG +++ NIS
Sbjct: 111 SEDTMGWWTGVVGASGAVFGLFGALFVVQRHLGRNDVQLLVIIGINLVIGFMPGMNISWQ 170
Query: 269 AHLGGAAVAAL 279
+H+GG V A+
Sbjct: 171 SHVGGLIVGAI 181
>gi|418619999|ref|ZP_13182810.1| peptidase, S54 family [Staphylococcus hominis VCU122]
gi|374823562|gb|EHR87557.1| peptidase, S54 family [Staphylococcus hominis VCU122]
Length = 485
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 124 SEVVYGLIIANTAVFMLWRI-----ADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDV 178
S + Y LI N +++ +I +D K + + N + G + LITS F H +
Sbjct: 156 SPMTYTLIAINVLIWLYMKIYLNHFSDIKLLDVGGLVHF-NVVHGEWYRLITSMFLHFNF 214
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS 216
EHI+ NM+ L+ FG + +GP +L +Y+ + G+
Sbjct: 215 EHILMNMLSLFIFGKIVETIVGPYKMLGIYLISGLFGN 252
>gi|195172754|ref|XP_002027161.1| GL20022 [Drosophila persimilis]
gi|194112974|gb|EDW35017.1| GL20022 [Drosophila persimilis]
Length = 349
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 6/129 (4%)
Query: 99 RAQFPERSFASFRYRWRSWLRQYGSSEVVYG-LIIANTAVFMLWRIADPKFMANNFTISL 157
R+ S++ + R + E V+ + + N VF LWR+ P+ A T
Sbjct: 117 RSLVERSSWSQLKLEIRQHWDNLNTGEKVFAPICLVNLLVFGLWRV--PRLRATMITYFT 174
Query: 158 DNFLSGRLHT--LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGG 215
N + R+ + S FSH HI +NM L+ F + +LG E L LYM+ +
Sbjct: 175 SN-PAARIVCWPMFLSTFSHYSAMHIFANMYVLHSFANAAATSLGKEQFLALYMSAGVFS 233
Query: 216 SVFYLVYHA 224
S+ ++Y A
Sbjct: 234 SLISILYKA 242
>gi|339246831|ref|XP_003375049.1| peptidase, S54 family [Trichinella spiralis]
gi|316971689|gb|EFV55435.1| peptidase, S54 family [Trichinella spiralis]
Length = 1196
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 17/109 (15%)
Query: 125 EVVYGLIIANTAVFMLWRIADPK--------FMANNFTISLDNFLSGRLHTLITSAFSHI 176
+ + G+I N AV++ W++ PK FM F SL +I S FSHI
Sbjct: 155 KAIGGIIALNVAVYLAWKV--PKLHPLLKRYFMCGYFGASL-------CTPMIYSVFSHI 205
Query: 177 DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+ H+ NM L+ FG ++ R G E + LY+ S+ L+ A
Sbjct: 206 NFLHMAVNMYVLWSFGPTLVRLTGLEQFVALYLTSGAVSSMCSLIIKAI 254
>gi|314936330|ref|ZP_07843677.1| rhomboid family protein [Staphylococcus hominis subsp. hominis C80]
gi|313654949|gb|EFS18694.1| rhomboid family protein [Staphylococcus hominis subsp. hominis C80]
Length = 485
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 124 SEVVYGLIIANTAVFMLWRI-----ADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDV 178
S + Y LI N +++ +I +D K + + N + G + LITS F H +
Sbjct: 156 SPMTYTLIAINVLIWLYMKIYLNHFSDIKLLDVGGLVHF-NVVHGEWYRLITSMFLHFNF 214
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS 216
EHI+ NM+ L+ FG + +GP +L +Y+ + G+
Sbjct: 215 EHILMNMLSLFIFGKIVETIVGPYKMLGIYLISGLFGN 252
>gi|260641830|ref|ZP_05859099.1| rhomboid family protein [Bacteroides finegoldii DSM 17565]
gi|260624579|gb|EEX47450.1| peptidase, S54 family [Bacteroides finegoldii DSM 17565]
Length = 309
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 74/177 (41%), Gaps = 32/177 (18%)
Query: 129 GLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH---TLITSAFSHIDVEHIVSNM 185
G+ + T + + R+ + + +L L G +H +L T F H + HI+ NM
Sbjct: 35 GIFVIGTLIHVFLRLFEVNTLDIFNIFALPASLVGFIHQPWSLFTYMFMHAGILHILFNM 94
Query: 186 IGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV-YHAFLAMSSKRQGMWVVDPS--- 241
+ LY+FG ++L LY+ G I G + Y+V Y+ F SS+ G +V S
Sbjct: 95 LWLYWFGSLFLYFFSAKHLRGLYILGGICGGLLYMVAYNVFPLFSSQVTGATLVGASASV 154
Query: 242 ------------------------RTPALGVFLIGKDMLRIIEGNSNISGSAHLGGA 274
R L + +IG D+L I N+ AHLGGA
Sbjct: 155 LAIVAATAYREPNYRVQLFLFGAVRLKYLALVVIGIDVLSITSSNAG-GHIAHLGGA 210
>gi|294656917|ref|XP_459243.2| DEHA2D17380p [Debaryomyces hansenii CBS767]
gi|199431837|emb|CAG87416.2| DEHA2D17380p [Debaryomyces hansenii CBS767]
Length = 337
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 127 VYGLIIANTAVFMLWRIAD-PKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM 185
VY LI N AVF++WR+ +F+ + DN S +++ +AFSH ++ H+ NM
Sbjct: 139 VYSLIAVNGAVFLMWRVPQFSRFLTRYGLLVKDNMYSS--WSMVGAAFSHQNLGHLFVNM 196
Query: 186 IGLYFFGMSIGRTLGPEYLLKLYMAGAI 213
L FG ++ +G +Y+ A+
Sbjct: 197 FVLQSFGTTLCAAIGVTNFAIMYLNSAV 224
>gi|42525643|ref|NP_970741.1| rhomboid [Treponema denticola ATCC 35405]
gi|422340835|ref|ZP_16421776.1| rhomboid family protein [Treponema denticola F0402]
gi|449103871|ref|ZP_21740614.1| hypothetical protein HMPREF9730_01511 [Treponema denticola AL-2]
gi|449106028|ref|ZP_21742720.1| hypothetical protein HMPREF9729_00985 [Treponema denticola ASLM]
gi|449108116|ref|ZP_21744760.1| hypothetical protein HMPREF9722_00456 [Treponema denticola ATCC
33520]
gi|449110633|ref|ZP_21747233.1| hypothetical protein HMPREF9735_00282 [Treponema denticola ATCC
33521]
gi|449114556|ref|ZP_21751033.1| hypothetical protein HMPREF9721_01551 [Treponema denticola ATCC
35404]
gi|449118805|ref|ZP_21755206.1| hypothetical protein HMPREF9725_00671 [Treponema denticola H1-T]
gi|449121194|ref|ZP_21757546.1| hypothetical protein HMPREF9727_00306 [Treponema denticola MYR-T]
gi|449124938|ref|ZP_21761255.1| hypothetical protein HMPREF9723_01299 [Treponema denticola OTK]
gi|449129942|ref|ZP_21766170.1| hypothetical protein HMPREF9724_00835 [Treponema denticola SP37]
gi|451967767|ref|ZP_21920996.1| hypothetical protein HMPREF9728_00162 [Treponema denticola US-Trep]
gi|41815654|gb|AAS10622.1| rhomboid family protein [Treponema denticola ATCC 35405]
gi|325475239|gb|EGC78424.1| rhomboid family protein [Treponema denticola F0402]
gi|448940621|gb|EMB21526.1| hypothetical protein HMPREF9723_01299 [Treponema denticola OTK]
gi|448944577|gb|EMB25455.1| hypothetical protein HMPREF9724_00835 [Treponema denticola SP37]
gi|448951420|gb|EMB32233.1| hypothetical protein HMPREF9727_00306 [Treponema denticola MYR-T]
gi|448951833|gb|EMB32642.1| hypothetical protein HMPREF9725_00671 [Treponema denticola H1-T]
gi|448956181|gb|EMB36943.1| hypothetical protein HMPREF9721_01551 [Treponema denticola ATCC
35404]
gi|448960007|gb|EMB40724.1| hypothetical protein HMPREF9735_00282 [Treponema denticola ATCC
33521]
gi|448961966|gb|EMB42660.1| hypothetical protein HMPREF9722_00456 [Treponema denticola ATCC
33520]
gi|448964324|gb|EMB44996.1| hypothetical protein HMPREF9730_01511 [Treponema denticola AL-2]
gi|448966596|gb|EMB47251.1| hypothetical protein HMPREF9729_00985 [Treponema denticola ASLM]
gi|451703553|gb|EMD57919.1| hypothetical protein HMPREF9728_00162 [Treponema denticola US-Trep]
Length = 209
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 59/141 (41%), Gaps = 26/141 (18%)
Query: 170 TSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIGGSVFYLVYHA---- 224
T F H D H+ NM+ L+FFG+ + R +G E++L + G IGG + +LVY A
Sbjct: 58 TYQFVHGDFFHLAFNMLALFFFGVPVERKIGTKEFILYYLLIGTIGGILSFLVYAATGFY 117
Query: 225 ---FLAMSSKRQG---------------MWVVDPSRTPALGVFLIGKDMLRIIEGNSNIS 266
+ S G +W V P P L ++G ++ +I S
Sbjct: 118 TITLIGASGAIFGVLLLYAVLYPNSVIYIWGVIPVPAPLL---ILGYAVIELISIFSIGD 174
Query: 267 GSAHLGGAAVAALAWARIRRR 287
G AHL W IR R
Sbjct: 175 GVAHLTHFIGLIAGWVYIRIR 195
>gi|117558447|gb|AAI25773.1| LOC100036610 protein [Xenopus (Silurana) tropicalis]
Length = 324
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 7/137 (5%)
Query: 88 KSFFDGKVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD- 145
KS+ D + + +FR + W + V G+I+ N VF LWR+
Sbjct: 76 KSYLDDIQADWLEKLRPPKHGAFRKQVNEWWNSLSEGQKTVSGIIVLNGLVFCLWRVPSL 135
Query: 146 PKFMANNFTISLDNFLSGRLH-TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYL 204
+ M FT N S L +I S FSH + H+ +NM L+ F SI LG E
Sbjct: 136 QRTMIRYFT---SNPASRSLCLPMIFSTFSHFSLFHMAANMYVLWSFSTSIVSILGKEQF 192
Query: 205 LKLYM-AGAIGGSVFYL 220
L +Y+ AG + + Y+
Sbjct: 193 LAVYLSAGTVSTFISYV 209
>gi|397612848|gb|EJK61912.1| hypothetical protein THAOC_17510, partial [Thalassiosira oceanica]
Length = 434
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Query: 114 WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGR-LHTLITSA 172
W++ G + ++ + + N AV+ L + P+ A S D L GR LH LIT
Sbjct: 206 WQTAEPTMGETTLIGKIFLVNIAVYGLQTLM-PQLTAWGAKRS-DLLLEGRQLHRLITPV 263
Query: 173 FSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
F H + H+V+N L G ++ GP L Y+ + G++F V
Sbjct: 264 FLHGGIGHLVANSYSLKSMGNNVEGAFGPARTLATYLVSGVAGNIFSAV 312
>gi|282879046|ref|ZP_06287806.1| peptidase, S54 (rhomboid) family protein [Prevotella buccalis ATCC
35310]
gi|281298780|gb|EFA91189.1| peptidase, S54 (rhomboid) family protein [Prevotella buccalis ATCC
35310]
Length = 304
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
R++ L+T F H EHI NM L+ FG + R GP+ L Y++ IG +F
Sbjct: 46 RIYQLVTYMFMHASFEHIFFNMFALWMFGCVVERVWGPKKFLFYYISCGIGAGLF 100
>gi|380016976|ref|XP_003692443.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like [Apis florea]
Length = 338
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 3/126 (2%)
Query: 110 FRYRWRSWLRQYGSSEVVY-GLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTL 168
+R++ +W R E ++ + N VF+ W I P F + N S R +
Sbjct: 116 WRHKMETWWRNLSEGERIFVPICFLNVLVFLSWHI--PAFRPTMYRYFCSNPTSNRCWPM 173
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAM 228
+ FSH + H++ NM LY F LG E L LY+ + S +Y A + +
Sbjct: 174 LFVTFSHYSLLHLIINMYVLYDFCKIAVTELGREQFLALYLTSGVVSSFSSYLYKATVGI 233
Query: 229 SSKRQG 234
G
Sbjct: 234 KDPSLG 239
>gi|375138853|ref|YP_004999502.1| hypothetical protein [Mycobacterium rhodesiae NBB3]
gi|359819474|gb|AEV72287.1| putative membrane protein [Mycobacterium rhodesiae NBB3]
Length = 282
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 50/113 (44%), Gaps = 10/113 (8%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNF----LSGRLHTLITSAFSHIDVEHI 181
V Y LI N A+F L + M++ L F G + LI+SAF H HI
Sbjct: 71 VTYVLIAVNVAMFAL------QMMSSELQRGLVLFSPAVADGEWYRLISSAFLHYGPTHI 124
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQG 234
+ NM LY G + LG LY+ A+GGSV + A A ++ G
Sbjct: 125 LFNMWALYVVGPPLEAALGRLRFASLYLVSALGGSVLVYLLSALGAQTAGASG 177
>gi|124004455|ref|ZP_01689300.1| rhomboid family protein [Microscilla marina ATCC 23134]
gi|123990027|gb|EAY29541.1| rhomboid family protein [Microscilla marina ATCC 23134]
Length = 322
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%)
Query: 124 SEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVS 183
+ +V GL+I N VF ++ T+ F + L+T F H D H++
Sbjct: 5 TPIVRGLLIINVFVFFADSFISKDALSIYGTLWYVEFPEFKPWQLLTHMFLHADFFHLLG 64
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
NM+GL+FFG + + G Y A GG+ F +V
Sbjct: 65 NMMGLFFFGPWLEQNWGARNFFIFYFACGFGGAAFQMV 102
>gi|264680766|ref|YP_003280676.1| Rhomboid-like protein [Comamonas testosteroni CNB-2]
gi|262211282|gb|ACY35380.1| Rhomboid-like protein [Comamonas testosteroni CNB-2]
Length = 500
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 71/163 (43%), Gaps = 28/163 (17%)
Query: 151 NNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMA 210
+++S +N + TS F H H++ NM+ L+ FG ++ LG L Y+
Sbjct: 145 ERWSMSYENGAGWQPLQAFTSIFLHGSTSHLLGNMVFLFLFGFTLELALGAFTYLAFYVI 204
Query: 211 GAIGGSVFYLVYHAFLA--------MSSKRQGMWVV-----------------DPSRTPA 245
G IG S+F L+++A + S M+ V + +R PA
Sbjct: 205 GGIGASLFALMFYAGMGGYGLGASGAISALMAMYAVMYRMRRIRFFYMLLFYFNYARWPA 264
Query: 246 LGVFLI--GKDMLRIIEGNSNISGSAHLGGAAVAA-LAWARIR 285
L + + G ++L+ + G ++ AH GG A L W+ +R
Sbjct: 265 LIMLPVWMGVELLQHLLGGKQVAYMAHFGGLLTGALLMWSYMR 307
>gi|256419907|ref|YP_003120560.1| rhomboid family protein [Chitinophaga pinensis DSM 2588]
gi|256034815|gb|ACU58359.1| Rhomboid family protein [Chitinophaga pinensis DSM 2588]
Length = 277
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 14/150 (9%)
Query: 126 VVYGLIIANTAVFMLWR-----IADPKFMANNFTISLDNFLSGRL---HTLITSAFSHID 177
V+ L+I N VF+ + +P+++ + F + ++ RL H L+T F H
Sbjct: 15 VIKNLLIINALVFLAQSTMGEFLGNPRYIEDTFAL---HYWGSRLFKPHQLVTHLFMHGS 71
Query: 178 VEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWV 237
H+ +NM L+ FG ++ GP+ L YM +G + L + L + R
Sbjct: 72 FGHLFTNMFTLWMFGATLENIWGPKRFLIFYMVCGLGAA---LCHMGVLTYENVRLAHDA 128
Query: 238 VDPSRTPALGVFLIGKDMLRIIEGNSNISG 267
+ P L F I D + GN G
Sbjct: 129 REFINNPTLTNFRILDDRFDLDAGNFAAEG 158
>gi|260906986|ref|ZP_05915308.1| Rhomboid family protein [Brevibacterium linens BL2]
Length = 235
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 29/42 (69%)
Query: 180 HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
H+++NMIGL+FFG I R LG L +Y+ G +GGSV LV
Sbjct: 77 HLLANMIGLFFFGSFIERALGRWRFLTIYLLGTVGGSVMVLV 118
>gi|392945858|ref|ZP_10311500.1| putative membrane protein [Frankia sp. QA3]
gi|392289152|gb|EIV95176.1| putative membrane protein [Frankia sp. QA3]
Length = 341
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 147 KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLK 206
F F I++D+ + + L+T+AF H V HI+ NM LY G + LG L
Sbjct: 165 DFAMIGFRIAVDD----QYYRLLTAAFLHAGVLHILFNMYALYLLGFQLEAILGRARYLG 220
Query: 207 LYMAGAIGGSVF 218
L++AGA+GG+
Sbjct: 221 LFVAGAVGGNTL 232
>gi|378715572|ref|YP_005280461.1| rhomboid family protein [Gordonia polyisoprenivorans VH2]
gi|375750275|gb|AFA71095.1| rhomboid family protein [Gordonia polyisoprenivorans VH2]
Length = 302
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 76/183 (41%), Gaps = 36/183 (19%)
Query: 128 YGLIIANTAVFMLWRIADPKFMANNFTISLD-----------NFLSGRLHTLITSAFSHI 176
Y LI N VF A + A++F + + N G+ L+T+ F H
Sbjct: 79 YTLIAINVVVF-----AYTIYAAHSFNVEVSGPLLHGELVRGNVFLGQYWRLLTAGFLHY 133
Query: 177 DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQG-- 234
+ H+ NMI LY G + LG + +YM +GGS ++ + A S+ G
Sbjct: 134 SLIHLAVNMISLYILGRDLEIALGIGRFVMVYMTALLGGSAAVMIAQSNEARSAGASGAI 193
Query: 235 ------MWVV----DPSRTPALGVFLIGKDMLRIIEGNSNISGSAHLGG-----AAVAAL 279
M +V S P L + I M I G IS +AH+GG AA AAL
Sbjct: 194 YGLMGAMLIVVLRLRVSPAPVLTIIAINLVMSFSIPG---ISLAAHVGGLVFGAAATAAL 250
Query: 280 AWA 282
W+
Sbjct: 251 IWS 253
>gi|302336842|ref|YP_003802048.1| rhomboid family protein [Spirochaeta smaragdinae DSM 11293]
gi|301634027|gb|ADK79454.1| Rhomboid family protein [Spirochaeta smaragdinae DSM 11293]
Length = 214
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 15/116 (12%)
Query: 110 FRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGR--LHT 167
FRYR+ + +G+II N VF ++ P+ + +T + + G+
Sbjct: 11 FRYRYYN---------AAFGIIIVNI-VFFVFNTISPQ--SRYYTALIPGLIIGKGFYWQ 58
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLG-PEYLLKLYMAGAIGGSVFYLVY 222
T F+H ++ HI NM+GL+FFG + R +G E+LL + G + G ++VY
Sbjct: 59 FFTYMFTHANISHIFFNMLGLFFFGTQVERRIGSSEFLLFYLLTGFLAGLFSFIVY 114
>gi|47228277|emb|CAG07672.1| unnamed protein product [Tetraodon nigroviridis]
Length = 376
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 73/175 (41%), Gaps = 27/175 (15%)
Query: 125 EVVYGLIIANTAVFMLWRIAD-PKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVS 183
+ V G++ N V WRI + M FT + + + ++ S+FSH + H+++
Sbjct: 164 KTVTGIVAVNAVVLCCWRIPIMQRSMIKYFTSNPAS--KTKCLPMVLSSFSHYSLIHMMA 221
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYM-AGAIGGSVFYLVYHAF------LAMSSKRQGMW 236
NM L+ F I LG E L +Y+ AG I V Y+ A L S +
Sbjct: 222 NMYVLWTFSSGIVSLLGKEQFLAVYLSAGVISTMVSYMCKTATGRLYPSLGASGAVMAVL 281
Query: 237 VVDPSRTPA--LGVF---------------LIGKDMLRIIEGNSNISGSAHLGGA 274
++ P LG+ LI D + +I G + +AHLGGA
Sbjct: 282 AAVCAKVPEAKLGIIFLPTVTFSAGSALKALIAIDTMGLILGWRLLDHAAHLGGA 336
>gi|357044108|ref|ZP_09105792.1| hypothetical protein HMPREF9138_02264 [Prevotella histicola F0411]
gi|355367658|gb|EHG15086.1| hypothetical protein HMPREF9138_02264 [Prevotella histicola F0411]
Length = 320
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 14/100 (14%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSG--------RLHTLITSAFSHID 177
V L+I N VF+ ++ N I L+N S R+ L+T F H
Sbjct: 7 VTKNLLIINILVFI------ATYVLNGLNIDLNNIFSLHFFLASDFRIWQLVTYMFMHGG 60
Query: 178 VEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
V HI+ NM L+ FGM + GP+ L YM IG +
Sbjct: 61 VMHILMNMFMLWMFGMVVENVWGPKKFLFYYMVCGIGAGL 100
>gi|406662505|ref|ZP_11070600.1| Rhomboid family protein [Cecembia lonarensis LW9]
gi|405553578|gb|EKB48783.1| Rhomboid family protein [Cecembia lonarensis LW9]
Length = 312
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 31/149 (20%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH--- 223
+++T F H + HI+ NM+ LY+FG+ + + LG L LY+ G + G+V Y++ +
Sbjct: 72 SILTYMFFHEGLFHILFNMLFLYWFGLLVDQYLGSRKLANLYILGGLAGAVLYVLMYNIS 131
Query: 224 -------AFLAMSSKRQGMWVV-------DPSRTPALGVFLIGKDMLRII---------- 259
F M G++ V P+ T L L+G ++ I
Sbjct: 132 PHFSEVLPFAKMLGASAGVYAVVVGAATLAPNTTFQL--LLLGPVKIKYIAIFYVVIAFV 189
Query: 260 -EGNSNISGS-AHLGGAAVAALAWARIRR 286
SN G AHLGGAA+ ++R+
Sbjct: 190 NSAGSNAGGELAHLGGAAMGYFYVTQLRK 218
>gi|359687144|ref|ZP_09257145.1| intramembrane serine protease [Leptospira licerasiae serovar
Varillal str. MMD0835]
gi|418750461|ref|ZP_13306747.1| peptidase, S54 family [Leptospira licerasiae str. MMD4847]
gi|418757302|ref|ZP_13313490.1| peptidase, S54 family [Leptospira licerasiae serovar Varillal str.
VAR 010]
gi|384116973|gb|EIE03230.1| peptidase, S54 family [Leptospira licerasiae serovar Varillal str.
VAR 010]
gi|404273064|gb|EJZ40384.1| peptidase, S54 family [Leptospira licerasiae str. MMD4847]
Length = 202
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMA 210
G +TL TS F H D H+ NM+ LYFFG + LGP + LY+A
Sbjct: 41 EGNYYTLATSGFVHADFSHLFFNMLTLYFFGRHVDMVLGPLGFMGLYLA 89
>gi|395819378|ref|XP_003783069.1| PREDICTED: LOW QUALITY PROTEIN: presenilins-associated
rhomboid-like protein, mitochondrial-like [Otolemur
garnettii]
Length = 518
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 7/138 (5%)
Query: 88 KSFFDGKVLFFRAQFPERSFASFRYRWRSWLRQYGS-SEVVYGLIIANTAVFMLWRIAD- 145
+S+FDG + + FR W + V G+I A+ VF +WR+
Sbjct: 269 QSYFDGIKADWSDSIKPQKEGDFRKEINKWWNNLSDGQQTVTGIIAADIFVFCVWRVPSL 328
Query: 146 PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYL 204
+ M FT N S L + ++ S FSH + H+ +NM L+ F S G E
Sbjct: 329 QRTMIRYFT---SNPASKVLCSPMLLSTFSHFSIFHMAANMSVLWSFSPSKVNIXGQEQF 385
Query: 205 LKLYM-AGAIGGSVFYLV 221
+ +Y+ AG I V Y+
Sbjct: 386 MAVYLSAGVISNFVSYMC 403
>gi|385805283|ref|YP_005841681.1| peptidase, family S54 [Fervidicoccus fontis Kam940]
gi|383795146|gb|AFH42229.1| peptidase, family S54 [Fervidicoccus fontis Kam940]
Length = 241
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIGGSVFYL 220
RL T+ T+ F H D+ H++ NM+ LY FG SI LG +YLL +++G G ++FY+
Sbjct: 64 RLWTIFTAMFIHTDIVHVLGNMLFLYIFGDSIEIALGKVKYLLFYFLSGT-GAALFYV 120
>gi|260940587|ref|XP_002614593.1| hypothetical protein CLUG_05371 [Clavispora lusitaniae ATCC 42720]
gi|238851779|gb|EEQ41243.1| hypothetical protein CLUG_05371 [Clavispora lusitaniae ATCC 42720]
Length = 380
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 124 SEVVYGLIIANTAVFMLWRI-ADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIV 182
+ +V+ LI N A F+ W+ ++MA + DN S + +L+ SAFSH + H++
Sbjct: 183 NALVFTLIGLNVAGFLAWKSPVGSRYMARYGLLVKDNVAS--VFSLLGSAFSHQEGMHLL 240
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMAGAI 213
NM+ LY FG ++ +G L +Y+ A+
Sbjct: 241 FNMLMLYSFGSTLCGYVGASNFLTMYLNSAV 271
>gi|399545579|ref|YP_006558887.1| Rhomboid protease glpG [Marinobacter sp. BSs20148]
gi|399160911|gb|AFP31474.1| Rhomboid protease glpG [Marinobacter sp. BSs20148]
Length = 226
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 26/175 (14%)
Query: 117 WLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHI 176
WL +E+ GL++ + + + +AD LD G++ LIT F H
Sbjct: 41 WLTSMSRNELATGLMVIDPRQYEWFSLAD------RLNALLDTLSKGQVWRLITPDFLHF 94
Query: 177 DVEHIVSNMIGLYFFGMSI----GRTL-------------GPEYLLKLYMAGAIGGSVFY 219
HI+ N + L+F G + GRT G +YL+ + G + G V+
Sbjct: 95 SWPHIIFNSVMLWFLGSQVEFIDGRTRLLVLALVASLLSNGLQYLVTGPLFGGLSGVVYA 154
Query: 220 LVYHAFLAMSSKRQGMWVVDPSR-TPALGVFLIGKDMLRIIEGNSNISGSAHLGG 273
++ + +L S +R + P+ T AL ++G L + G N++ AHLGG
Sbjct: 155 IMGYCWL--SQRRLPRFQFPPALITFALAWMVLGFTPLPNMLGMGNMANEAHLGG 207
>gi|333912953|ref|YP_004486685.1| rhomboid family protein [Delftia sp. Cs1-4]
gi|333743153|gb|AEF88330.1| Rhomboid family protein [Delftia sp. Cs1-4]
Length = 498
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 30/52 (57%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
T ITSAF H H+V NM+ L+ FG S+ LG L Y+ GA+G S+
Sbjct: 152 TWITSAFLHASTGHLVGNMLFLFMFGFSVELALGRATYLLFYLLGAVGASLL 203
>gi|418621400|ref|ZP_13184176.1| peptidase, S54 family [Staphylococcus epidermidis VCU123]
gi|374829344|gb|EHR93148.1| peptidase, S54 family [Staphylococcus epidermidis VCU123]
Length = 394
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 18/165 (10%)
Query: 126 VVYGLIIANTAVFM-----LWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEH 180
+ Y LI+ N +++ L R +D K + + N + G + LI+S F H + EH
Sbjct: 159 ITYTLILINIVIWLCMILYLNRFSDVKLLEVGGLVHF-NVVHGEWYRLISSMFLHFNFEH 217
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA-----------FLAMS 229
I+ NM+ L+ FG + +G +L +Y+ + G+ L ++ F +
Sbjct: 218 ILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIG 277
Query: 230 SKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG-NSNISGSAHLGG 273
S M++ +G LI +L + SNI+ AHLGG
Sbjct: 278 SIFVIMYLSKNFNKKMIGQLLIALVVLIVFSLFMSNINIMAHLGG 322
>gi|299142060|ref|ZP_07035194.1| rhomboid family protein [Prevotella oris C735]
gi|298576522|gb|EFI48394.1| rhomboid family protein [Prevotella oris C735]
Length = 289
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 160 FLSGRLH--TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
FL+ H L+T F H ++EHI NM L+ FGM + GP L Y+ IG V
Sbjct: 17 FLASDFHFYQLVTYMFMHANLEHIFFNMFALWMFGMVVENVWGPRKFLFYYILCGIGAGV 76
Query: 218 F 218
F
Sbjct: 77 F 77
>gi|124513622|ref|XP_001350167.1| rhomboid protease ROM6, putative [Plasmodium falciparum 3D7]
gi|23615584|emb|CAD52576.1| rhomboid protease ROM6, putative [Plasmodium falciparum 3D7]
Length = 569
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 12/80 (15%)
Query: 131 IIANTAVFMLWRIADP-------KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVS 183
++ N +F+ WRI++ FM NF S +N +HT+ITS+ SHI H +
Sbjct: 269 LLCNGLIFITWRISEVLINKRLFHFMCRNFICSYNNIKQKYIHTIITSSISHITFPHFLF 328
Query: 184 NMIGLYFFGMSIGRT-LGPE 202
NM Y +I T L PE
Sbjct: 329 NMWAFY----TITNTLLSPE 344
>gi|120435156|ref|YP_860842.1| transmembrane rhomboid family protein [Gramella forsetii KT0803]
gi|117577306|emb|CAL65775.1| transmembrane rhomboid family protein [Gramella forsetii KT0803]
Length = 299
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 28/147 (19%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV-YHAF 225
++IT +F H + HI+SNM+ LYF G+ P LL Y G I G++ Y++ Y+ F
Sbjct: 67 SIITYSFLHSGIWHILSNMLILYFSGIYFLNYFSPRRLLNYYFLGVIIGALVYMLSYNLF 126
Query: 226 -----------LAMSSKRQGMWVVDPSRTPALGV---------------FLIGKDMLRII 259
+ S+ + + + P + V FL+ D+++I
Sbjct: 127 PAFQGTGRSYLMGASAGVMAVLIGIATHIPNMRVRLMIIGNIKFWWIAAFLLVLDIIQIP 186
Query: 260 EGNSNISGSAHLGGAAVAALAWARIRR 286
GN+ AHLGGAA+ L ++++
Sbjct: 187 MGNAG-GHLAHLGGAALGYLYTNQLKK 212
>gi|307719843|ref|YP_003875375.1| rhomboid family protein [Spirochaeta thermophila DSM 6192]
gi|306533568|gb|ADN03102.1| rhomboid family protein [Spirochaeta thermophila DSM 6192]
Length = 213
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 61/141 (43%), Gaps = 23/141 (16%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIGG----- 215
G + L++ F+H HI+ NM+GL+FFG+ + R +G E+LL + G G
Sbjct: 53 GGMVWQLVSYMFAHASFNHILFNMLGLFFFGLQVEREMGSREFLLFYFFTGIFAGLVSLL 112
Query: 216 --------SVFYL-----VYHAFLAMSS----KRQGMWVVDPSRTPALGVFLIGKDMLRI 258
VF L VY LA ++ R ++ + P P L + ++L
Sbjct: 113 VYWLSGAYGVFLLGASGVVYGVLLAFATFYPRARIFLFGIFPVPAPYLVIGYTAIELLAQ 172
Query: 259 IEGNSNISGSAHLGGAAVAAL 279
N++ HL G A A L
Sbjct: 173 FGAQDNVAHLTHLAGFAGAYL 193
>gi|366089319|ref|ZP_09455792.1| membrane-associated serine protease [Lactobacillus acidipiscis KCTC
13900]
Length = 217
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 128 YGLIIANTAVFMLWRIADPKFMANN---FTISLDNFLS-GRLHTLITSAFSHIDVEHIVS 183
Y LII N V++L +A N F ++ + G L T F HI ++HIV
Sbjct: 11 YFLIIINIIVYLLMTVAGGSENTNVLVFFGAKVNQLIGQGEWWRLFTPMFIHIGLQHIVL 70
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
NM+ LYF G+ I G + LY+ +GG++
Sbjct: 71 NMVTLYFIGIQIEAVFGKWRFVILYLISGLGGNI 104
>gi|307200222|gb|EFN80516.1| Presenilins-associated rhomboid-like protein, mitochondrial
[Harpegnathos saltator]
Length = 223
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 4/127 (3%)
Query: 110 FRYRWRSWLRQYGSSEVVY-GLIIANTAVFMLWRI-ADPKFMANNFTISLDNFLSGRLHT 167
+R + +W R + V+ ++ NT VF+ WR+ A K M F + + +S
Sbjct: 1 WRAKMETWWRNLTEGQRVFVPILFLNTIVFLAWRVPAFQKTMVRYFCSNPASSVS--CWP 58
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
++ S FSH ++ H+ +NM L+ F I TLG E + LY++ + + +Y L
Sbjct: 59 MVFSTFSHYNIFHLAANMFVLHSFSSLIVSTLGKEQFVALYLSSGVVSNFVSYIYKTILK 118
Query: 228 MSSKRQG 234
+ G
Sbjct: 119 LPVMSLG 125
>gi|406662506|ref|ZP_11070601.1| Rhomboid family protein [Cecembia lonarensis LW9]
gi|405553579|gb|EKB48784.1| Rhomboid family protein [Cecembia lonarensis LW9]
Length = 237
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 15/90 (16%)
Query: 136 AVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSI 195
A F L+ I +FM F +T F H D H+ SNM GL+ FG +
Sbjct: 6 AFFALYYIHSNRFMPTQF---------------LTYMFMHADGWHLFSNMFGLFIFGPLL 50
Query: 196 GRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+ LGP+ LL L++ +G + Y Y A+
Sbjct: 51 EQFLGPKKLLTLWLVCGVGSGLLYSGYTAY 80
>gi|237718984|ref|ZP_04549465.1| rhomboid family protein [Bacteroides sp. 2_2_4]
gi|229451762|gb|EEO57553.1| rhomboid family protein [Bacteroides sp. 2_2_4]
Length = 301
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 65/150 (43%), Gaps = 30/150 (20%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV-YHAF 225
+L T F H + HI+ NM+ LY+FG ++L LY+ G I G + Y+V Y+ F
Sbjct: 68 SLFTYMFMHAGILHILFNMLWLYWFGSLFLYFFSAKHLRGLYVLGGICGGLLYMVAYNVF 127
Query: 226 LAMSSKRQGMWVVDPS---------------------------RTPALGVFLIGKDMLRI 258
SS+ G +V S R L + +IG D+L I
Sbjct: 128 PLFSSQVTGATLVGASASVLAIVAATAYREPNYRVQLFLFGAIRLKYLALVVIGIDVLSI 187
Query: 259 IEGNSNISGSAHLGGAAVAALAWARIRRRG 288
N+ AHLGG A+A L +A +G
Sbjct: 188 TSSNAG-GHIAHLGG-ALAGLWFAASLNKG 215
>gi|386347942|ref|YP_006046191.1| rhomboid family protein [Spirochaeta thermophila DSM 6578]
gi|339412909|gb|AEJ62474.1| Rhomboid family protein [Spirochaeta thermophila DSM 6578]
Length = 213
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 61/141 (43%), Gaps = 23/141 (16%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIGG----- 215
G + L++ F+H HI+ NM+GL+FFG+ + R +G E+LL + G G
Sbjct: 53 GGMVWQLVSYMFAHASFNHILFNMLGLFFFGLQVEREMGSREFLLFYFFTGIFAGLVSLL 112
Query: 216 --------SVFYL-----VYHAFLAMSS----KRQGMWVVDPSRTPALGVFLIGKDMLRI 258
VF L VY LA ++ R ++ + P P L + ++L
Sbjct: 113 VYWLSGAYGVFLLGASGVVYGVLLAFATFYPRARIFLFGIFPVPAPYLVIGYTAIELLAQ 172
Query: 259 IEGNSNISGSAHLGGAAVAAL 279
N++ HL G A A L
Sbjct: 173 FGAQDNVAHLTHLAGFAGAYL 193
>gi|423300722|ref|ZP_17278746.1| hypothetical protein HMPREF1057_01887 [Bacteroides finegoldii
CL09T03C10]
gi|408472609|gb|EKJ91135.1| hypothetical protein HMPREF1057_01887 [Bacteroides finegoldii
CL09T03C10]
Length = 301
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 58/136 (42%), Gaps = 29/136 (21%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV-YHAF 225
+L T F H + HI+ NM+ LY+FG ++L LY+ G I G + Y+V Y+ F
Sbjct: 68 SLFTYMFMHAGILHILFNMLWLYWFGSLFLYFFSAKHLRGLYILGGICGGLLYMVAYNVF 127
Query: 226 LAMSSKRQGMWVVDPS---------------------------RTPALGVFLIGKDMLRI 258
SS+ G +V S R L + +IG D+L I
Sbjct: 128 PLFSSQVPGTTLVGASASVLAVVAATAYREPNYRVQLLLFGAVRLKYLALVVIGIDVLSI 187
Query: 259 IEGNSNISGSAHLGGA 274
N+ AHLGGA
Sbjct: 188 TSSNAG-GHIAHLGGA 202
>gi|325185827|emb|CCA20333.1| serine protease family S54 putative [Albugo laibachii Nc14]
Length = 285
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 127 VYGLIIANTAVFMLWRIA-----DPKFMANNFTISLDN-FLSGRLHTLITSAFSHIDVEH 180
+ ++ N VF LWR++ ++M +F S D F+ R HTL+TSAFS + H
Sbjct: 77 IVAILGVNCVVFGLWRVSFYHRGMHRWMWRHFACSYDAVFMGKRFHTLVTSAFSQNTLPH 136
Query: 181 IVSNMIGLYFFGMSI 195
+ NM L+ FG I
Sbjct: 137 LAINMFMLWEFGSQI 151
>gi|390943213|ref|YP_006406974.1| hypothetical protein Belba_1612 [Belliella baltica DSM 15883]
gi|390416641|gb|AFL84219.1| putative membrane protein [Belliella baltica DSM 15883]
Length = 263
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%)
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+T F H + H+ SNM GL+ FG + + LGP+ LL L+M IG + Y Y+AF
Sbjct: 50 LTYMFMHANGWHLFSNMFGLFVFGPLLEQFLGPKKLLILWMVCGIGSGLLYSGYNAF 106
>gi|374600022|ref|ZP_09673024.1| Rhomboid family protein [Myroides odoratus DSM 2801]
gi|423325185|ref|ZP_17303026.1| hypothetical protein HMPREF9716_02383 [Myroides odoratimimus CIP
103059]
gi|373911492|gb|EHQ43341.1| Rhomboid family protein [Myroides odoratus DSM 2801]
gi|404607194|gb|EKB06728.1| hypothetical protein HMPREF9716_02383 [Myroides odoratimimus CIP
103059]
Length = 274
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 60/136 (44%), Gaps = 21/136 (15%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
GR T I+ +F H + H++ NMI L+F L +Y+ GA+GGS+ Y +
Sbjct: 60 GRFWTFISYSFVHATIWHLLLNMIMLFFVSNLFFTFFTTRQFLFVYLPGALGGSILYYIS 119
Query: 223 HAFLAMSSKRQGM-------WVVDPSRTPALGV--FLIGKDMLRIIEG-----------N 262
F AM S G + S P + V L+G+ + I G +
Sbjct: 120 ALFFAMGSGLVGASAAVMAPLIAVASFAPQMEVRLALLGRIKMIYIAGFIILIDLFQLSS 179
Query: 263 SNISGS-AHLGGAAVA 277
SN+ G AHLGGA V
Sbjct: 180 SNVGGHLAHLGGALVG 195
>gi|328791984|ref|XP_395657.3| PREDICTED: rhomboid-7 [Apis mellifera]
Length = 237
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 3/126 (2%)
Query: 110 FRYRWRSWLRQYGSSEVVY-GLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTL 168
+R++ +W R E ++ + N VF+ W I P F + N S R +
Sbjct: 15 WRHKMETWWRNLSEGERIFVPICFLNVLVFLSWHI--PAFRPTMYRYFCSNPTSNRCWPM 72
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAM 228
+ FSH + H++ NM LY F LG E L LY+ + S +Y A + +
Sbjct: 73 LFVTFSHYSLLHLIINMYVLYDFCKIAVTELGREQFLALYLTSGVVSSFSSYLYKASVGI 132
Query: 229 SSKRQG 234
G
Sbjct: 133 KDPSLG 138
>gi|332665288|ref|YP_004448076.1| rhomboid family protein [Haliscomenobacter hydrossis DSM 1100]
gi|332334102|gb|AEE51203.1| Rhomboid family protein [Haliscomenobacter hydrossis DSM 1100]
Length = 324
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 16/132 (12%)
Query: 111 RYRWRSWLRQYGSSEVVYGLIIANTAVFML-------------WRIADPKFMA--NNFTI 155
R W R++ V +I+ N AVF+ W+ F + F +
Sbjct: 3 RSIWEDLKREFNYGNAVTRIILVNVAVFVGINLVNIGLYLFNGWKADSTAFKQFLDYFCM 62
Query: 156 SLD-NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIG 214
S D F+ +IT+ FSH HI+ NMI + G +G LG + +L +Y+ G I
Sbjct: 63 SSDWKFVLFHPWVIITNMFSHYSFSHILWNMIFYHMCGRIVGDLLGNKRVLPIYLMGGIA 122
Query: 215 GSVFYLVYHAFL 226
G+ + + L
Sbjct: 123 GAAMFFITENLL 134
>gi|386384848|ref|ZP_10070191.1| hypothetical protein STSU_17454 [Streptomyces tsukubaensis
NRRL18488]
gi|385667692|gb|EIF91092.1| hypothetical protein STSU_17454 [Streptomyces tsukubaensis
NRRL18488]
Length = 299
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
G+ + L+TS F H D+ HI NM+ L+F G + LG L LY+ +GG VF
Sbjct: 132 DGQWYRLLTSVFLHQDLSHIAFNMLALWFLGRMVEPALGRSRFLVLYLLSGLGGDVF 188
>gi|381179391|ref|ZP_09888244.1| Rhomboid family protein [Treponema saccharophilum DSM 2985]
gi|380768686|gb|EIC02672.1| Rhomboid family protein [Treponema saccharophilum DSM 2985]
Length = 229
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 58/146 (39%), Gaps = 36/146 (24%)
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL-VYHAFLA 227
+T F H +++H+ NM+GL FFGM + R LG + + +Y+ + +F + VY+A L
Sbjct: 65 LTYMFMHGNIQHLFFNMLGLLFFGMQVERALGSKEFVMMYLVVGVLSGLFSVGVYYA-LG 123
Query: 228 MSSKRQGM----------------------------------WVVDPSRTPALGVFLIGK 253
QGM W V P P L +
Sbjct: 124 AYMISQGMYPYTYLVSLVGASGAIYGILLAYAVIFPRSRIFVWFVIPVPAPILVIAYAVI 183
Query: 254 DMLRIIEGNSNISGSAHLGGAAVAAL 279
+ + G SN++ HL G A A L
Sbjct: 184 EFVSQFTGGSNVAHQTHLAGFAFAFL 209
>gi|262198763|ref|YP_003269972.1| rhomboid family protein [Haliangium ochraceum DSM 14365]
gi|262082110|gb|ACY18079.1| Rhomboid family protein [Haliangium ochraceum DSM 14365]
Length = 371
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
TL++S F H D+ H++ NM+ L+ +G ++ LGP + +Y+A GG+V L Y AFL
Sbjct: 61 TLLSSMFLHADIWHLLGNMLYLWIYGDNVEHRLGPLGYIGVYLA---GGAVATLSYAAFL 117
Query: 227 A 227
+
Sbjct: 118 S 118
>gi|110635361|ref|YP_675569.1| rhomboid-like protein [Chelativorans sp. BNC1]
gi|110286345|gb|ABG64404.1| Rhomboid-like protein [Chelativorans sp. BNC1]
Length = 237
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 65/151 (43%), Gaps = 33/151 (21%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T +T +F H D+ H+ NM+ L+ FG ++ LG L Y+A + G+ H +
Sbjct: 74 TYVTYSFLHGDIFHLGGNMLFLWVFGDNVEDALGHLRYLAFYLACTVAGAFL----HGLV 129
Query: 227 AMSSK----------------------RQGMWVVD----PSRTPALGVFL--IGKDMLRI 258
A S+ R +WV+ P R PA V L IG L
Sbjct: 130 APDSQAPLIGASGAVAGVIAAYLILHPRVKLWVLAFARIPVRLPAYIVLLLWIGSQFLMF 189
Query: 259 -IEGNSNISGSAHLGGAAVAALAWARIRRRG 288
++ + IS SAH+GG A+ +RR+G
Sbjct: 190 AVDRENQISWSAHIGGILAGAVLVVIMRRQG 220
>gi|423291417|ref|ZP_17270265.1| hypothetical protein HMPREF1069_05308 [Bacteroides ovatus
CL02T12C04]
gi|392663417|gb|EIY56967.1| hypothetical protein HMPREF1069_05308 [Bacteroides ovatus
CL02T12C04]
Length = 301
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 58/136 (42%), Gaps = 29/136 (21%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV-YHAF 225
+L T F H + HI+ NM+ LY+FG ++L LY+ G I G + Y+V Y+ F
Sbjct: 68 SLFTYMFMHAGILHILFNMLWLYWFGSLFLYFFSAKHLRGLYVLGGICGGLLYMVAYNVF 127
Query: 226 LAMSSKRQGMWVVDPS---------------------------RTPALGVFLIGKDMLRI 258
SS+ G +V S R L + +IG D+L I
Sbjct: 128 PLFSSQVTGATLVGASASVLAIVAATAYREPDYRVQLFLFGAIRLKYLALVVIGIDVLSI 187
Query: 259 IEGNSNISGSAHLGGA 274
N+ AHLGGA
Sbjct: 188 TSSNAG-GHIAHLGGA 202
>gi|418576075|ref|ZP_13140221.1| hypothetical protein SSME_12770 [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
gi|379325137|gb|EHY92269.1| hypothetical protein SSME_12770 [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
Length = 489
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 124 SEVVYGLIIANTAVFM-----LWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDV 178
S V Y LII N +++ L R +D K + + N + G + LITS F H +
Sbjct: 160 SPVTYALIILNVVIWLFMVLFLNRSSDLKLLDVGGLVHF-NVVHGEWYRLITSIFLHYNF 218
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS 216
EHI+ NM+ L+ FG + +G + +Y+ + G+
Sbjct: 219 EHILMNMLSLFIFGKIVESIVGHWRMFVIYLVAGLFGN 256
>gi|418405979|ref|ZP_12979299.1| hypothetical protein AT5A_02115 [Agrobacterium tumefaciens 5A]
gi|358007892|gb|EHK00215.1| hypothetical protein AT5A_02115 [Agrobacterium tumefaciens 5A]
Length = 257
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 83/205 (40%), Gaps = 48/205 (23%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLD---------NFLSGRLH------TLIT 170
V GLI+ N V++ + AN + L +L L T++T
Sbjct: 19 VTIGLIVVNVLVWLFTGVLASDVQANAAALGLGFIPAVVFDYAYLEPALQVVPDDLTVVT 78
Query: 171 SAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSS 230
AF H+D H+ NM+ L+ FG ++ LG L Y+A AI G++ H F+A S
Sbjct: 79 YAFLHLDFWHMAGNMLFLWVFGDNVEDALGHFRFLIFYIACAIAGALL----HGFVAPMS 134
Query: 231 K----------------------RQGMWVVDPSRTP-ALGVFL-----IGKDMLRIIEG- 261
+ + +WV+ R P L F+ IG+ L + G
Sbjct: 135 EGPLIGASGAVSGVVAAYFLLHPKVRVWVLVFMRIPLPLPAFIPLALWIGQQFLMLALGL 194
Query: 262 NSNISGSAHLGGAAVAALAWARIRR 286
N+S AH+GG A+ +RR
Sbjct: 195 EENVSWGAHVGGILAGAVMVIFMRR 219
>gi|392553138|ref|ZP_10300275.1| rhomboid-like protein [Pseudoalteromonas spongiae UST010723-006]
Length = 360
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 126 VVYGLIIANTAVFMLW--RIADPKFMANNFTISLDNFLSGR-LHTLITSAFSHIDVEHIV 182
V + LI N +F + I F+ NF + + +G+ + TL+T F H V H+V
Sbjct: 153 VNWSLIAINILIFCAYFFNIESFGFVLENFALRPADVNNGQEIWTLLTCVFLHGSVMHLV 212
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
NM LY G ++ LG + L Y+ IG S+F LV
Sbjct: 213 GNMYFLYIIGDNLEDALGHKKYLMYYLICGIGASLFSLV 251
>gi|300767209|ref|ZP_07077121.1| S54 family peptidase [Lactobacillus plantarum subsp. plantarum ATCC
14917]
gi|380032412|ref|YP_004889403.1| membrane-bound protease, rhomboid family [Lactobacillus plantarum
WCFS1]
gi|418275176|ref|ZP_12890499.1| membrane-bound protease, rhomboid family [Lactobacillus plantarum
subsp. plantarum NC8]
gi|300495028|gb|EFK30184.1| S54 family peptidase [Lactobacillus plantarum subsp. plantarum ATCC
14917]
gi|342241655|emb|CCC78889.1| membrane-bound protease, rhomboid family [Lactobacillus plantarum
WCFS1]
gi|376008727|gb|EHS82056.1| membrane-bound protease, rhomboid family [Lactobacillus plantarum
subsp. plantarum NC8]
Length = 227
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
Query: 115 RSWLRQYGSSEVVYGLIIANTAVFML-WRIADPKFMANNFTISLDN--FLSGRLHTLITS 171
R W + ++V+ G+ +A VF++ W + D + N + +N +G+ L+T
Sbjct: 6 RWWQTEPAITQVLLGITVA---VFLVEWLMGDGAMLVFNSLGAKNNQAIAAGQWWRLVTP 62
Query: 172 AFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
F H+ + HI N + +YF GM I G +L +Y+ G I G++
Sbjct: 63 MFLHMGLTHIALNGVVIYFMGMQIEAMYGHWRMLAIYILGGISGNI 108
>gi|160884104|ref|ZP_02065107.1| hypothetical protein BACOVA_02080 [Bacteroides ovatus ATCC 8483]
gi|293368712|ref|ZP_06615317.1| peptidase, S54 (rhomboid) family protein [Bacteroides ovatus SD CMC
3f]
gi|336412652|ref|ZP_08593005.1| hypothetical protein HMPREF1017_00113 [Bacteroides ovatus
3_8_47FAA]
gi|423293420|ref|ZP_17271547.1| hypothetical protein HMPREF1070_00212 [Bacteroides ovatus
CL03T12C18]
gi|156110446|gb|EDO12191.1| peptidase, S54 family [Bacteroides ovatus ATCC 8483]
gi|292636177|gb|EFF54664.1| peptidase, S54 (rhomboid) family protein [Bacteroides ovatus SD CMC
3f]
gi|335942698|gb|EGN04540.1| hypothetical protein HMPREF1017_00113 [Bacteroides ovatus
3_8_47FAA]
gi|392678363|gb|EIY71771.1| hypothetical protein HMPREF1070_00212 [Bacteroides ovatus
CL03T12C18]
Length = 301
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 58/136 (42%), Gaps = 29/136 (21%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV-YHAF 225
+L T F H + HI+ NM+ LY+FG ++L LY+ G I G + Y+V Y+ F
Sbjct: 68 SLFTYMFMHAGILHILFNMLWLYWFGSLFLYFFSAKHLRGLYVLGGICGGLLYMVAYNVF 127
Query: 226 LAMSSKRQGMWVVDPS---------------------------RTPALGVFLIGKDMLRI 258
SS+ G +V S R L + +IG D+L I
Sbjct: 128 PLFSSQVAGATLVGASASVLAIVAATAYREPNYRVQLFLFGAIRLKYLALVVIGIDVLSI 187
Query: 259 IEGNSNISGSAHLGGA 274
N+ AHLGGA
Sbjct: 188 TSSNAG-GHIAHLGGA 202
>gi|418411961|ref|ZP_12985227.1| hypothetical protein HMPREF9281_00831 [Staphylococcus epidermidis
BVS058A4]
gi|410891544|gb|EKS39341.1| hypothetical protein HMPREF9281_00831 [Staphylococcus epidermidis
BVS058A4]
Length = 486
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 18/165 (10%)
Query: 126 VVYGLIIANTAVFM-----LWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEH 180
+ Y LI+ N +++ L R +D K + + N + G + LI+S F H + EH
Sbjct: 159 ITYTLILINIVIWLCMILYLNRFSDVKLLEVGGLVHF-NVVHGEWYRLISSMFLHFNFEH 217
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA-----------FLAMS 229
I+ NM+ L+ FG + +G +L +Y+ + G+ L ++ F +
Sbjct: 218 ILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIG 277
Query: 230 SKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG-NSNISGSAHLGG 273
S M++ +G LI +L + SNI+ AHLGG
Sbjct: 278 SIFVIMYLSKNFNKKMIGQLLIALVVLIVFSLFMSNINIMAHLGG 322
>gi|359765361|ref|ZP_09269192.1| rhomboid family protein [Gordonia polyisoprenivorans NBRC 16320]
gi|359317295|dbj|GAB22025.1| rhomboid family protein [Gordonia polyisoprenivorans NBRC 16320]
Length = 264
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 76/183 (41%), Gaps = 36/183 (19%)
Query: 128 YGLIIANTAVFMLWRIADPKFMANNFTISLD-----------NFLSGRLHTLITSAFSHI 176
Y LI N VF A + A++F + + N G+ L+T+ F H
Sbjct: 41 YTLIAINVVVF-----AYTIYAAHSFNVEVSGPLLHGELVRGNVFLGQYWRLLTAGFLHY 95
Query: 177 DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQG-- 234
+ H+ NMI LY G + LG + +YM +GGS ++ + A S+ G
Sbjct: 96 SLIHLAVNMISLYILGRDLEIALGIGRFVMVYMTALLGGSAAVMIAQSNEARSAGASGAI 155
Query: 235 ------MWVV----DPSRTPALGVFLIGKDMLRIIEGNSNISGSAHLGG-----AAVAAL 279
M +V S P L + I M I G IS +AH+GG AA AAL
Sbjct: 156 YGLMGAMLIVVLRLRVSPAPVLTIIAINLVMSFSIPG---ISLAAHVGGLVFGAAATAAL 212
Query: 280 AWA 282
W+
Sbjct: 213 IWS 215
>gi|336404295|ref|ZP_08584993.1| hypothetical protein HMPREF0127_02306 [Bacteroides sp. 1_1_30]
gi|295085557|emb|CBK67080.1| Uncharacterized membrane protein (homolog of Drosophila rhomboid)
[Bacteroides xylanisolvens XB1A]
gi|335943623|gb|EGN05462.1| hypothetical protein HMPREF0127_02306 [Bacteroides sp. 1_1_30]
Length = 301
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 58/136 (42%), Gaps = 29/136 (21%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV-YHAF 225
+L T F H + HI+ NM+ LY+FG ++L LY+ G I G + Y+V Y+ F
Sbjct: 68 SLFTYMFMHAGILHILFNMLWLYWFGSLFLYFFSAKHLRGLYVLGGICGGLLYMVAYNVF 127
Query: 226 LAMSSKRQGMWVVDPS---------------------------RTPALGVFLIGKDMLRI 258
SS+ G +V S R L + +IG D+L I
Sbjct: 128 PLFSSQVAGATLVGASASVLAIVAATAYREPNYRVQLFLFGAIRLKYLALVVIGIDVLSI 187
Query: 259 IEGNSNISGSAHLGGA 274
N+ AHLGGA
Sbjct: 188 TSSNAG-GHIAHLGGA 202
>gi|420211212|ref|ZP_14716586.1| rhomboid family protein [Staphylococcus epidermidis NIHLM001]
gi|394281665|gb|EJE25891.1| rhomboid family protein [Staphylococcus epidermidis NIHLM001]
Length = 486
Score = 44.7 bits (104), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 18/165 (10%)
Query: 126 VVYGLIIANTAVFM-----LWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEH 180
+ Y LI+ N +++ L R +D K + + N + G + LI+S F H + EH
Sbjct: 159 ITYTLILINIVIWLCMILYLNRFSDVKLLEVGGLVHF-NVVHGEWYRLISSMFLHFNFEH 217
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA-----------FLAMS 229
I+ NM+ L+ FG + +G +L +Y+ + G+ L ++ F +
Sbjct: 218 ILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIG 277
Query: 230 SKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG-NSNISGSAHLGG 273
S M++ +G LI +L + SNI+ AHLGG
Sbjct: 278 SIFVIMYLSKNFNKKMIGQLLIALVVLIVFSLFMSNINIMAHLGG 322
>gi|414160916|ref|ZP_11417179.1| hypothetical protein HMPREF9310_01553 [Staphylococcus simulans
ACS-120-V-Sch1]
gi|410876595|gb|EKS24493.1| hypothetical protein HMPREF9310_01553 [Staphylococcus simulans
ACS-120-V-Sch1]
Length = 485
Score = 44.7 bits (104), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 101/255 (39%), Gaps = 45/255 (17%)
Query: 46 HPFHPTFS-WRSQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSFFDGKVLFFRAQFPE 104
HP H F+ R+QQ L LKT L NP++ T L S Q K+ K + E
Sbjct: 99 HPIHMNFNVIRNQQDL-LKT---LPNPII-----TKLYSRQNDKTSLYYKKRLYSNNPIE 149
Query: 105 RSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLD------ 158
+ F + V Y LI N +++ + F + LD
Sbjct: 150 KYMLKF-------------APVTYSLIAINIIIWLFMFLIINAFTNRSL---LDWGGLVH 193
Query: 159 -NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
N + G ++ LI+S F H + EHI+ NM+ L+ FG + G +L +Y I G++
Sbjct: 194 FNVVHGEIYRLISSMFIHFNFEHILMNMLSLFIFGKLVEAIAGHWKMLGIYFISGIFGNI 253
Query: 218 FYLVYH----------AFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG--NSNI 265
L A + + + TP + + L+G L + +N+
Sbjct: 254 VSLALDTNSISVGASGAIFGLIGSLFAIMYLSKQYTPKMLLQLVGVLALLTVFSLFMANV 313
Query: 266 SGSAHLGGAAVAALA 280
+ AHLGG LA
Sbjct: 314 NIYAHLGGFIGGLLA 328
>gi|420163079|ref|ZP_14669826.1| rhomboid family protein [Staphylococcus epidermidis NIHLM095]
gi|420167946|ref|ZP_14674598.1| rhomboid family protein [Staphylococcus epidermidis NIHLM087]
gi|394234768|gb|EJD80342.1| rhomboid family protein [Staphylococcus epidermidis NIHLM095]
gi|394237974|gb|EJD83460.1| rhomboid family protein [Staphylococcus epidermidis NIHLM087]
Length = 486
Score = 44.7 bits (104), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 18/165 (10%)
Query: 126 VVYGLIIANTAVFM-----LWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEH 180
+ Y LI+ N +++ L R +D K + + N + G + LI+S F H + EH
Sbjct: 159 ITYTLILINIVIWLCMILYLNRFSDVKLLEVGGLVHF-NVVHGEWYRLISSMFLHFNFEH 217
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA-----------FLAMS 229
I+ NM+ L+ FG + +G +L +Y+ + G+ L ++ F +
Sbjct: 218 ILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIG 277
Query: 230 SKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG-NSNISGSAHLGG 273
S M++ +G LI +L + SNI+ AHLGG
Sbjct: 278 SIFVIMYLSKNFNKKMIGQLLIALVVLIVFSLFMSNINIMAHLGG 322
>gi|410031401|ref|ZP_11281231.1| hypothetical protein MaAK2_19464 [Marinilabilia sp. AK2]
Length = 263
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 15/90 (16%)
Query: 136 AVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSI 195
A F L+ I +FM F +T F H D H+ SNM GL+ FG +
Sbjct: 32 AFFALYYIHSNRFMPTQF---------------LTYMFMHADGWHLFSNMFGLFIFGPLL 76
Query: 196 GRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+ LGP+ LL L++ +G + Y Y A+
Sbjct: 77 EQFLGPKKLLTLWLVCGVGSGLLYSGYTAY 106
>gi|209878672|ref|XP_002140777.1| rhomboid family protein [Cryptosporidium muris RN66]
gi|209556383|gb|EEA06428.1| rhomboid family protein [Cryptosporidium muris RN66]
Length = 315
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 23/147 (15%)
Query: 92 DGKVLFFRAQFPERSFASFRYRWRSWLRQYGSSEVVYGLIIA----------NTAVFMLW 141
+ KV+ ++P F +S L G+ E Y I+ N VF LW
Sbjct: 8 NSKVVPLITKYPILDFGKLYMSHKSALFTQGTHE--YNRIMVDRYTNLLNTINVVVFSLW 65
Query: 142 RIADP------KFMANNFTISLDNF---LSGRLHTLITSAFSHIDVEHIVSNMIGLYFFG 192
R A KF+ NFT ++ + +++T +TS SHI + H++SN+ L
Sbjct: 66 RYAINSNLSMLKFLERNFTCNISDSSYSFQKKIYTPLTSGVSHITLSHLLSNLWALNTII 125
Query: 193 MSIGR--TLGPEYLLKLYMAGAIGGSV 217
S+ R ++ + ++ LY AG+I G++
Sbjct: 126 NSLKRDNSIKGKDIILLYAAGSISGAI 152
>gi|73662516|ref|YP_301297.1| hypothetical protein SSP1207 [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72495031|dbj|BAE18352.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 485
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 124 SEVVYGLIIANTAVFM-----LWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDV 178
S V Y LII N +++ L R +D K + + N + G + LITS F H +
Sbjct: 156 SPVTYALIILNVVIWLFMVLFLNRSSDLKLLDIGGLVHF-NVVHGEWYRLITSIFLHYNF 214
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS 216
EHI+ NM+ L+ FG + +G + +Y+ + G+
Sbjct: 215 EHILMNMLSLFIFGKIVESIVGHWRMFVIYLVAGLFGN 252
>gi|420187246|ref|ZP_14693267.1| rhomboid family protein [Staphylococcus epidermidis NIHLM039]
gi|394256225|gb|EJE01158.1| rhomboid family protein [Staphylococcus epidermidis NIHLM039]
Length = 486
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 18/165 (10%)
Query: 126 VVYGLIIANTAVFM-----LWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEH 180
+ Y LI+ N +++ L R +D K + + N + G + LI+S F H + EH
Sbjct: 159 ITYTLILINIVIWLCMILYLNRFSDVKLLEVGGLVHF-NVVHGEWYRLISSMFLHFNFEH 217
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA-----------FLAMS 229
I+ NM+ L+ FG + +G +L +Y+ + G+ L ++ F +
Sbjct: 218 ILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIG 277
Query: 230 SKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG-NSNISGSAHLGG 273
S M++ +G LI +L + SNI+ AHLGG
Sbjct: 278 SIFVIMYLSKNFNKKMIGQLLIALVVLIVFSLFMSNINIMAHLGG 322
>gi|392533728|ref|ZP_10280865.1| rhomboid-like protein [Pseudoalteromonas arctica A 37-1-2]
Length = 361
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 77/180 (42%), Gaps = 38/180 (21%)
Query: 126 VVYGLIIANTAVFMLWRIADPKF--MANNFTISLDNFLSG-RLHTLITSAFSHIDVEHIV 182
V GLI+ NT +F L+ + F + +NF ++ + G L T++T F H + H+V
Sbjct: 154 VTRGLIVLNTLIFALYFLNPSSFSYVIDNFAMTPADLSKGNELWTVLTCVFLHGSIMHLV 213
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMA------------------------GAIGGSV- 217
NM LY G ++ LG + L Y+A GAI G
Sbjct: 214 GNMYFLYIVGDNLEDVLGHKRFLLWYLACGLLASFASYIVSPMSNIPGVGASGAIAGLFG 273
Query: 218 FYLVY--HAFLAMSSKRQGMWVVDPSRTPALGVFLI--GKDMLRIIEGNSNISGSAHLGG 273
YL++ HA L M+V+ + A+ F I G ++ + G I AH+GG
Sbjct: 274 MYLIWFRHASLTF------MFVIYQKKLSAVWFFAIWLGFNIFGAVTGPDGIDYGAHIGG 327
>gi|299144761|ref|ZP_07037829.1| rhomboid family protein [Bacteroides sp. 3_1_23]
gi|298515252|gb|EFI39133.1| rhomboid family protein [Bacteroides sp. 3_1_23]
Length = 296
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 58/136 (42%), Gaps = 29/136 (21%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV-YHAF 225
+L T F H + HI+ NM+ LY+FG ++L LY+ G I G + Y+V Y+ F
Sbjct: 68 SLFTYMFMHAGILHILFNMLWLYWFGSLFLYFFSAKHLRGLYVLGGICGGLLYMVAYNVF 127
Query: 226 LAMSSKRQGMWVVDPS---------------------------RTPALGVFLIGKDMLRI 258
SS+ G +V S R L + +IG D+L I
Sbjct: 128 PLFSSQVAGATLVGASASVLAIVAATAYREPNYRVQLFLFGAIRLKYLALVVIGIDVLSI 187
Query: 259 IEGNSNISGSAHLGGA 274
N+ AHLGGA
Sbjct: 188 TSSNAG-GHIAHLGGA 202
>gi|336262207|ref|XP_003345888.1| hypothetical protein SMAC_06289 [Sordaria macrospora k-hell]
gi|380088959|emb|CCC13071.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 329
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 8/90 (8%)
Query: 152 NFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM---IGLYFFGMSIGRTLGPEYLLKLY 208
+ TISLDN G T+ TSA SH ++EHI NM I L G+++G + G L +
Sbjct: 147 HLTISLDNLAQGSWWTMFTSAVSHQNLEHIGKNMLTFISLATMGINMGLSNG--QLFCVC 204
Query: 209 MAGAIGGS---VFYLVYHAFLAMSSKRQGM 235
+ A+ GS +++ V S+RQG+
Sbjct: 205 LGSAVSGSMAQLWHFVRKVEGDRQSRRQGI 234
>gi|408492452|ref|YP_006868821.1| membrane protein, rhomboid family [Psychroflexus torquis ATCC
700755]
gi|408469727|gb|AFU70071.1| membrane protein, rhomboid family [Psychroflexus torquis ATCC
700755]
Length = 295
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 28/147 (19%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T+IT AF H + H++SNM+ LYF G +L LY+ GAI G++ Y + + L
Sbjct: 67 TIITYAFMHSGIFHVLSNMLILYFSGKFFLTYFSGRRMLNLYLLGAICGALVYALSYNLL 126
Query: 227 ------------AMSSKRQGMWVVDPSRTPALGV---------------FLIGKDMLRII 259
S+ V ++ P L V FL+ D+++I
Sbjct: 127 PAFSGTGRSYLIGASASVMATLVATATQAPNLQVRLFFLGNLKLWWIAAFLVVLDVVQIP 186
Query: 260 EGNSNISGSAHLGGAAVAALAWARIRR 286
N AHLGGA + L ++++
Sbjct: 187 LSNPG-GHLAHLGGAFIGYLYIVQLKK 212
>gi|418606637|ref|ZP_13169907.1| peptidase, S54 family [Staphylococcus epidermidis VCU057]
gi|374407413|gb|EHQ78275.1| peptidase, S54 family [Staphylococcus epidermidis VCU057]
Length = 477
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 18/165 (10%)
Query: 126 VVYGLIIANTAVFM-----LWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEH 180
+ Y LI+ N +++ L R +D K + + N + G + LI+S F H + EH
Sbjct: 159 ITYTLILINIVIWLCMILYLNRFSDVKLLEVGGLVHF-NVVHGEWYRLISSMFLHFNFEH 217
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA-----------FLAMS 229
I+ NM+ L+ FG + +G +L +Y+ + G+ L ++ F +
Sbjct: 218 ILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIG 277
Query: 230 SKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG-NSNISGSAHLGG 273
S M++ +G LI +L + SNI+ AHLGG
Sbjct: 278 SIFVIMYLSKNFNKKMIGQLLIALVVLIVFSLFMSNINIMAHLGG 322
>gi|156548506|ref|XP_001605844.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like isoform 1 [Nasonia vitripennis]
gi|345486034|ref|XP_003425391.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like isoform 2 [Nasonia vitripennis]
Length = 341
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 18/162 (11%)
Query: 79 TSLLSSQLRKSFFDGKVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAV 137
T L ++R + F G F+ + + + +R + R W E + Y + AN V
Sbjct: 89 TILEYERIRANTFKGYKNFYWSS--KATVIGWRAQTRDWWSNLSEGERMWYFICFANVLV 146
Query: 138 FMLWRIA--DP---KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFG 192
F+ WRI P K+ + N S+ ++ S FSH ++ H+ +NM L+ F
Sbjct: 147 FLAWRIPTWQPIMLKYFSTNPASSVTCL------PMVLSMFSHYNLWHLAANMYVLHSFS 200
Query: 193 MSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQG 234
+ LG E+ L +Y++ + S+F Y L KR G
Sbjct: 201 GAAVSYLGREHFLAVYLSSGVISSMFSNTYKILL----KRHG 238
>gi|27468153|ref|NP_764790.1| hypothetical protein SE1235 [Staphylococcus epidermidis ATCC 12228]
gi|57867074|ref|YP_188690.1| rhomboid family protein [Staphylococcus epidermidis RP62A]
gi|251810965|ref|ZP_04825438.1| S54 family peptidase [Staphylococcus epidermidis BCM-HMP0060]
gi|282876025|ref|ZP_06284892.1| peptidase, S54 (rhomboid) family protein [Staphylococcus
epidermidis SK135]
gi|293366490|ref|ZP_06613167.1| rhomboid family protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|417646984|ref|ZP_12296833.1| peptidase, S54 family [Staphylococcus epidermidis VCU144]
gi|417656060|ref|ZP_12305751.1| peptidase, S54 family [Staphylococcus epidermidis VCU028]
gi|417659640|ref|ZP_12309240.1| peptidase, S54 family [Staphylococcus epidermidis VCU045]
gi|417908746|ref|ZP_12552503.1| peptidase, S54 family [Staphylococcus epidermidis VCU037]
gi|417912278|ref|ZP_12555973.1| peptidase, S54 family [Staphylococcus epidermidis VCU105]
gi|417913747|ref|ZP_12557410.1| peptidase, S54 family [Staphylococcus epidermidis VCU109]
gi|418609437|ref|ZP_13172589.1| peptidase, S54 family [Staphylococcus epidermidis VCU065]
gi|418612797|ref|ZP_13175821.1| peptidase, S54 family [Staphylococcus epidermidis VCU117]
gi|418616300|ref|ZP_13179225.1| peptidase, S54 family [Staphylococcus epidermidis VCU120]
gi|418625262|ref|ZP_13187915.1| peptidase, S54 family [Staphylococcus epidermidis VCU125]
gi|418626366|ref|ZP_13188978.1| peptidase, S54 family [Staphylococcus epidermidis VCU126]
gi|418629382|ref|ZP_13191890.1| peptidase, S54 family [Staphylococcus epidermidis VCU127]
gi|418665219|ref|ZP_13226669.1| peptidase, S54 family [Staphylococcus epidermidis VCU081]
gi|419771673|ref|ZP_14297719.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-K]
gi|420165544|ref|ZP_14672235.1| rhomboid family protein [Staphylococcus epidermidis NIHLM088]
gi|420170258|ref|ZP_14676819.1| rhomboid family protein [Staphylococcus epidermidis NIHLM070]
gi|420183211|ref|ZP_14689344.1| rhomboid family protein [Staphylococcus epidermidis NIHLM049]
gi|420194847|ref|ZP_14700644.1| rhomboid family protein [Staphylococcus epidermidis NIHLM021]
gi|420197429|ref|ZP_14703153.1| rhomboid family protein [Staphylococcus epidermidis NIHLM020]
gi|420201679|ref|ZP_14707289.1| rhomboid family protein [Staphylococcus epidermidis NIHLM018]
gi|420206132|ref|ZP_14711642.1| rhomboid family protein [Staphylococcus epidermidis NIHLM008]
gi|420209055|ref|ZP_14714493.1| rhomboid family protein [Staphylococcus epidermidis NIHLM003]
gi|420214009|ref|ZP_14719289.1| rhomboid family protein [Staphylococcus epidermidis NIH05005]
gi|420221664|ref|ZP_14726591.1| peptidase, S54 family [Staphylococcus epidermidis NIH08001]
gi|420225746|ref|ZP_14730573.1| peptidase, S54 family [Staphylococcus epidermidis NIH06004]
gi|420227336|ref|ZP_14732107.1| peptidase, S54 family [Staphylococcus epidermidis NIH05003]
gi|420229653|ref|ZP_14734358.1| peptidase, S54 family [Staphylococcus epidermidis NIH04003]
gi|420234711|ref|ZP_14739271.1| peptidase, S54 family [Staphylococcus epidermidis NIH051475]
gi|421606956|ref|ZP_16048207.1| rhomboid family protein [Staphylococcus epidermidis AU12-03]
gi|27315699|gb|AAO04834.1|AE016748_68 conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228]
gi|57637732|gb|AAW54520.1| rhomboid family protein [Staphylococcus epidermidis RP62A]
gi|251805475|gb|EES58132.1| S54 family peptidase [Staphylococcus epidermidis BCM-HMP0060]
gi|281295050|gb|EFA87577.1| peptidase, S54 (rhomboid) family protein [Staphylococcus
epidermidis SK135]
gi|291319259|gb|EFE59628.1| rhomboid family protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329725333|gb|EGG61816.1| peptidase, S54 family [Staphylococcus epidermidis VCU144]
gi|329735277|gb|EGG71569.1| peptidase, S54 family [Staphylococcus epidermidis VCU045]
gi|329737310|gb|EGG73564.1| peptidase, S54 family [Staphylococcus epidermidis VCU028]
gi|341651289|gb|EGS75094.1| peptidase, S54 family [Staphylococcus epidermidis VCU105]
gi|341654769|gb|EGS78507.1| peptidase, S54 family [Staphylococcus epidermidis VCU109]
gi|341656107|gb|EGS79830.1| peptidase, S54 family [Staphylococcus epidermidis VCU037]
gi|374407651|gb|EHQ78503.1| peptidase, S54 family [Staphylococcus epidermidis VCU065]
gi|374409194|gb|EHQ79994.1| peptidase, S54 family [Staphylococcus epidermidis VCU081]
gi|374817874|gb|EHR82049.1| peptidase, S54 family [Staphylococcus epidermidis VCU117]
gi|374821126|gb|EHR85193.1| peptidase, S54 family [Staphylococcus epidermidis VCU120]
gi|374825404|gb|EHR89340.1| peptidase, S54 family [Staphylococcus epidermidis VCU125]
gi|374832800|gb|EHR96505.1| peptidase, S54 family [Staphylococcus epidermidis VCU126]
gi|374834085|gb|EHR97745.1| peptidase, S54 family [Staphylococcus epidermidis VCU127]
gi|383360492|gb|EID37887.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-K]
gi|394235345|gb|EJD80917.1| rhomboid family protein [Staphylococcus epidermidis NIHLM088]
gi|394240596|gb|EJD86019.1| rhomboid family protein [Staphylococcus epidermidis NIHLM070]
gi|394249674|gb|EJD94887.1| rhomboid family protein [Staphylococcus epidermidis NIHLM049]
gi|394263907|gb|EJE08628.1| rhomboid family protein [Staphylococcus epidermidis NIHLM021]
gi|394266236|gb|EJE10882.1| rhomboid family protein [Staphylococcus epidermidis NIHLM020]
gi|394271947|gb|EJE16426.1| rhomboid family protein [Staphylococcus epidermidis NIHLM018]
gi|394277971|gb|EJE22288.1| rhomboid family protein [Staphylococcus epidermidis NIHLM008]
gi|394279283|gb|EJE23591.1| rhomboid family protein [Staphylococcus epidermidis NIHLM003]
gi|394283931|gb|EJE28092.1| rhomboid family protein [Staphylococcus epidermidis NIH05005]
gi|394290290|gb|EJE34154.1| peptidase, S54 family [Staphylococcus epidermidis NIH08001]
gi|394293180|gb|EJE36903.1| peptidase, S54 family [Staphylococcus epidermidis NIH06004]
gi|394297267|gb|EJE40870.1| peptidase, S54 family [Staphylococcus epidermidis NIH05003]
gi|394298947|gb|EJE42502.1| peptidase, S54 family [Staphylococcus epidermidis NIH04003]
gi|394303954|gb|EJE47364.1| peptidase, S54 family [Staphylococcus epidermidis NIH051475]
gi|406657425|gb|EKC83813.1| rhomboid family protein [Staphylococcus epidermidis AU12-03]
Length = 486
Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 18/165 (10%)
Query: 126 VVYGLIIANTAVFM-----LWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEH 180
+ Y LI+ N +++ L R +D K + + N + G + LI+S F H + EH
Sbjct: 159 ITYTLILINIVIWLCMILYLNRFSDVKLLEVGGLVHF-NVVHGEWYRLISSMFLHFNFEH 217
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA-----------FLAMS 229
I+ NM+ L+ FG + +G +L +Y+ + G+ L ++ F +
Sbjct: 218 ILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIG 277
Query: 230 SKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG-NSNISGSAHLGG 273
S M++ +G LI +L + SNI+ AHLGG
Sbjct: 278 SIFVIMYLSKNFNKKMIGQLLIALVVLIVFSLFMSNINIMAHLGG 322
>gi|392568913|gb|EIW62087.1| hypothetical protein TRAVEDRAFT_163861 [Trametes versicolor
FP-101664 SS1]
Length = 313
Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 11/99 (11%)
Query: 113 RWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMAN-----------NFTISLDNFL 161
R R+ + S+ + +G+I N VF+ W +A K+ + NFT S +N
Sbjct: 100 RLRARINAIPSNYIFWGIIGLNGLVFVSWNLAWAKYQSTGDASSYLWLRRNFTSSAENMQ 159
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLG 200
GR T++TS FSH HI+ N YF + LG
Sbjct: 160 GGRWWTVVTSCFSHESSMHILFNGFTYYFMAPLVLSILG 198
>gi|418605748|ref|ZP_13169055.1| peptidase, S54 family [Staphylococcus epidermidis VCU041]
gi|420220495|ref|ZP_14725454.1| rhomboid family protein [Staphylococcus epidermidis NIH04008]
gi|420232065|ref|ZP_14736707.1| peptidase, S54 family [Staphylococcus epidermidis NIH051668]
gi|374401451|gb|EHQ72524.1| peptidase, S54 family [Staphylococcus epidermidis VCU041]
gi|394285848|gb|EJE29914.1| rhomboid family protein [Staphylococcus epidermidis NIH04008]
gi|394301787|gb|EJE45241.1| peptidase, S54 family [Staphylococcus epidermidis NIH051668]
Length = 486
Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 18/165 (10%)
Query: 126 VVYGLIIANTAVFM-----LWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEH 180
+ Y LI+ N +++ L R +D K + + N + G + LI+S F H + EH
Sbjct: 159 ITYTLILINIVIWLCMILYLNRFSDVKLLEVGGLVHF-NVVHGEWYRLISSMFLHFNFEH 217
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA-----------FLAMS 229
I+ NM+ L+ FG + +G +L +Y+ + G+ L ++ F +
Sbjct: 218 ILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGTIFGLIG 277
Query: 230 SKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG-NSNISGSAHLGG 273
S M++ +G LI +L + SNI+ AHLGG
Sbjct: 278 SIFVIMYLSKNFNKKMIGQLLIALVVLIVFSLFMSNINIMAHLGG 322
>gi|392954466|ref|ZP_10320017.1| hypothetical protein WQQ_40890 [Hydrocarboniphaga effusa AP103]
gi|391857123|gb|EIT67654.1| hypothetical protein WQQ_40890 [Hydrocarboniphaga effusa AP103]
Length = 189
Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 124 SEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSG-RLHTLITSAFSHIDVEHIV 182
+ V Y L+ N VF L ++ DP+ + + +L SG +IT AF H V H+
Sbjct: 2 TPVTYLLLGINIVVFGL-QLQDPQSLLPGY--ALWPLGSGFAPWQIITCAFLHGSVGHLA 58
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
+NM GL+ FG + R +G + LYMA + S+
Sbjct: 59 ANMFGLWMFGRDVEREIGSARFVNLYMASVVTASL 93
>gi|332027836|gb|EGI67898.1| Presenilins-associated rhomboid-like protein, mitochondrial
[Acromyrmex echinatior]
Length = 332
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 8/130 (6%)
Query: 105 RSFASFRYRWRS-----WLRQYGSSEVVYGLIIANTAVFMLWRIAD-PKFMANNFTISLD 158
R F R W+S W ++ + NT +F+LWR+ K M F +
Sbjct: 101 RQFRIKRTGWKSEMEAWWQNLTEGQKMFVPICFINTVIFLLWRVPTLQKTMVRYFCANPA 160
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
+ S +++ S FSH + H+ +NM L+ F LG E L LY++ + S
Sbjct: 161 S--SASCWSMVLSTFSHYSIIHLAANMYVLHSFSTIAVTALGKEQFLALYLSSGVISSFA 218
Query: 219 YLVYHAFLAM 228
VY + M
Sbjct: 219 SHVYKSIFGM 228
>gi|270307582|ref|YP_003329640.1| rhomboid [Dehalococcoides sp. VS]
gi|270153474|gb|ACZ61312.1| rhomboid [Dehalococcoides sp. VS]
Length = 190
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 37/58 (63%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA 224
T+ITS F H D+ H+ +NMI LYFFG ++ + + L ++ G + GS+ +++ +A
Sbjct: 50 TIITSLFVHADLWHLFANMITLYFFGNALLQMINQRSWLIIFFGGGLAGSLLFILLNA 107
>gi|344301141|gb|EGW31453.1| hypothetical protein SPAPADRAFT_62024 [Spathaspora passalidarum
NRRL Y-27907]
Length = 328
Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
+V+ ++ N VF++W++ + + I + L + T++ SAFSH HI+ N
Sbjct: 129 ALVWSIVALNAVVFLMWKVPSLQRYTMQYGIMFKDNLQS-VWTMLGSAFSHQSFGHILVN 187
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAI 213
M L FG ++ LG LY+ A+
Sbjct: 188 MFALQSFGTTLCAVLGVANFTILYLNSAV 216
>gi|320162418|ref|YP_004175643.1| rhomboid family protein [Anaerolinea thermophila UNI-1]
gi|319996272|dbj|BAJ65043.1| rhomboid family protein [Anaerolinea thermophila UNI-1]
Length = 258
Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISL---DNFL--SGRLHTLITSAFSHIDVEH 180
V Y L+ V++L ++ P F + +++ N L G LIT F H+ + H
Sbjct: 38 VTYILLGVTVGVYLLQMLSRPLF-GYDLLLAMGAKSNTLIQQGEFWRLITPMFLHVSLPH 96
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
I NM LY FG+S+ R G L LY G +GG V
Sbjct: 97 IAFNMYALYAFGVSLERHYGRRRFLLLYFIGGLGGVVL 134
>gi|319954281|ref|YP_004165548.1| peptidase s54, rhomboid domain protein [Cellulophaga algicola DSM
14237]
gi|319422941|gb|ADV50050.1| Peptidase S54, rhomboid domain protein [Cellulophaga algicola DSM
14237]
Length = 251
Score = 44.7 bits (104), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 3/110 (2%)
Query: 124 SEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVS 183
+E V LII N +F + +A M F + + R+ +IT F H HI+
Sbjct: 5 TEAVKHLIIINV-LFFVATLAIGDQMYEWFALWFPKNENFRIWQVITHMFMHGGPAHILF 63
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL--VYHAFLAMSSK 231
NM GL+ FG S+ LG + L LY + +G ++F L Y+ +L + S+
Sbjct: 64 NMFGLWMFGSSVEEYLGKKQFLFLYFSAGLGAALFQLGFYYYEYLPIHSE 113
>gi|73540854|ref|YP_295374.1| rhomboid-like protein [Ralstonia eutropha JMP134]
gi|72118267|gb|AAZ60530.1| Rhomboid-like protein [Ralstonia eutropha JMP134]
Length = 155
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
L+T F H ++ H+ NM+GL+ FG S+ +LGP +L +Y+A + + L ++A
Sbjct: 61 LLTYGFLHANLAHLAFNMLGLWMFGRSVEASLGPGRMLAVYLASLVSAGLIQLAVLGYIA 120
>gi|399524860|ref|ZP_10765362.1| peptidase, S54 family [Atopobium sp. ICM58]
gi|398373815|gb|EJN51650.1| peptidase, S54 family [Atopobium sp. ICM58]
Length = 292
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
T++T AF H + HI+ NM+ LY+ G +I +G L LY+ A+GGS F + +
Sbjct: 114 TVLTGAFLHGGITHILFNMLSLYWVGRAIEPAMGRWRFLALYLVSALGGSAFIIAW 169
>gi|425774376|gb|EKV12684.1| Rhomboid family protein, putative [Penicillium digitatum PHI26]
gi|425776886|gb|EKV15084.1| Rhomboid family protein, putative [Penicillium digitatum Pd1]
Length = 529
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLY 189
++ AN AV +LW+ P + N + F L +I S FSH H+ +NM+ L
Sbjct: 318 IVAANVAVTLLWKYIPPAWKLLNRYFVIVPFYPSSL-GMIGSTFSHQTWRHLGTNMMVLG 376
Query: 190 FFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
G + +G L +Y A + GSVF L
Sbjct: 377 LMGTRVHDEIGRGNFLAIYFASGVMGSVFSLT 408
>gi|410924341|ref|XP_003975640.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like [Takifugu rubripes]
Length = 380
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 71/174 (40%), Gaps = 27/174 (15%)
Query: 126 VVYGLIIANTAVFMLWRIAD-PKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
V G+I N V WRI + M FT + + + +I S+FSH + H+++N
Sbjct: 165 TVTGIIAVNAVVLCCWRIPIMQRSMIKYFTSNPAS--KTKCLPMILSSFSHYSIIHMMAN 222
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYM-AGAIGGSVFYLV------YHAFLAMSSKRQGMWV 237
M L+ F I LG E L +Y+ AG I V Y+ + L S +
Sbjct: 223 MYVLWTFSSGIVSLLGKEQFLAVYLSAGVISTMVSYICKTTTGRLYPSLGASGAVMAVLA 282
Query: 238 VDPSRTPA--LGVF---------------LIGKDMLRIIEGNSNISGSAHLGGA 274
++ P LG+ LI D +I G + +AHLGGA
Sbjct: 283 AVCTKVPEAKLGIIFLPMLTFSAGSALKALIAIDAAGLILGWRLLDHAAHLGGA 336
>gi|381399873|ref|ZP_09924890.1| Rhomboid family protein [Microbacterium laevaniformans OR221]
gi|380772836|gb|EIC06523.1| Rhomboid family protein [Microbacterium laevaniformans OR221]
Length = 281
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 74/176 (42%), Gaps = 27/176 (15%)
Query: 122 GSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHI 181
G V Y L+I + +++ I N + L+T H + HI
Sbjct: 75 GKPVVTYTLVIVTSVFYLIGLIPGIGLYVQNLLAFHAQLAYVQPWRLLTVTLVHASIFHI 134
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPS 241
NM+ L+ G S+ LG L LY+ A+GGSV A LA ++ WVV S
Sbjct: 135 AFNMLALWALGRSLEPLLGRWRFLALYLLSALGGSVL----TALLAPNT-----WVVGAS 185
Query: 242 RT--PALG-VFLIGKDM------LRIIEG---------NSNISGSAHLGGAAVAAL 279
LG +F+IG+ + + ++ G SNI+ AH+GG V AL
Sbjct: 186 GAVWGLLGAMFVIGRHLGANVTAIAVLLGINLVITFLPGSNIAWQAHIGGGLVGAL 241
>gi|344232149|gb|EGV64028.1| rhomboid-domain-containing protein [Candida tenuis ATCC 10573]
Length = 286
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 124 SEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHT---LITSAFSHIDVEH 180
S ++Y +I AN VF++W+ +P F+ F + ++++ L+ SAFSH H
Sbjct: 83 SWLIYSIIAANGLVFLMWK--NPNFI--TFMSRYGLLVKDKMYSNWSLLGSAFSHQSFMH 138
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAI 213
I NM L FG S+ LG L +Y+ A+
Sbjct: 139 IFVNMFVLQSFGTSLCAMLGATNFLVMYLNSAV 171
>gi|344175988|emb|CCA87141.1| putative rhomboid protease [Ralstonia syzygii R24]
Length = 543
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 26/128 (20%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
L+++ F H V H+V N+IGLY G+++ R GP L +Y+ + GS L + A A
Sbjct: 230 LLSATFLHAGVLHLVINVIGLYATGIAVERIYGPAAYLLIYLGAGLLGSALSLSFAAQHA 289
Query: 228 MSSKRQ-------GMWVVDPSR----TPA---------LGVFLIGKDMLRIIEG--NSNI 265
+ G W+V R PA LG+F+ + +++G +
Sbjct: 290 IGVGASGAVFGVAGAWLVAICRYRGQMPATLSKRLLTQLGMFV----LYSLVQGLTKPGV 345
Query: 266 SGSAHLGG 273
+AH+GG
Sbjct: 346 DNAAHIGG 353
>gi|118431630|ref|NP_148231.2| subfamily S26B peptidase [Aeropyrum pernix K1]
gi|116062954|dbj|BAA80882.2| putative subfamily S26B peptidase [Aeropyrum pernix K1]
Length = 253
Score = 44.3 bits (103), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
RL+T+ TS F H HI+ NM+ LY FG +I LG + LY+ +G VF++
Sbjct: 66 RLYTVFTSMFLHGSWAHILGNMLYLYIFGDNIESILGRARYIILYIGSGLGAVVFHIASI 125
Query: 224 AFLAMSS-KRQGMWVVDPSRTPALG 247
AF+ + + +P PA+G
Sbjct: 126 AFMPSEALINAALSSANPWMIPAVG 150
>gi|84687870|ref|ZP_01015738.1| rhomboid family protein [Maritimibacter alkaliphilus HTCC2654]
gi|84664125|gb|EAQ10621.1| rhomboid family protein [Rhodobacterales bacterium HTCC2654]
Length = 244
Score = 44.3 bits (103), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 118 LRQYGSSE----VVYGLIIANTAVFMLWRIADPKFMANNF---TISLDNFLSGR-LHTLI 169
+R + SE V Y L+ N VF+ D + + F + + SG L TLI
Sbjct: 4 IRDHNPSERTPFVTYILVAINVVVFLGQLGLDDRALGEAFWTWGVVPERITSGNGLETLI 63
Query: 170 TSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
TS F H HI NM+ L+ FG ++ LG L Y+A +G ++F ++
Sbjct: 64 TSQFLHSGFWHIAGNMLFLWIFGDNLEDELGHFGFLVFYLASGVGAAMFQIL 115
>gi|449126889|ref|ZP_21763164.1| hypothetical protein HMPREF9733_00567 [Treponema denticola SP33]
gi|448945092|gb|EMB25967.1| hypothetical protein HMPREF9733_00567 [Treponema denticola SP33]
Length = 209
Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 58/141 (41%), Gaps = 26/141 (18%)
Query: 170 TSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIGGSVFYLVYHA---- 224
T F H D H+ NM+ L+FFG+ + R +G E++L + G I G + +LVY A
Sbjct: 58 TYQFVHGDFFHLAFNMLALFFFGVPVERKIGTKEFILYYLLIGTIDGVLSFLVYAATGFY 117
Query: 225 ---FLAMSSKRQG---------------MWVVDPSRTPALGVFLIGKDMLRIIEGNSNIS 266
+ S G +W V P P L ++G ++ +I S
Sbjct: 118 IISLVGASGAIFGVLLLYAVIYPNSVVYLWAVIPVPAPLL---ILGYAVIELISIFSVGD 174
Query: 267 GSAHLGGAAVAALAWARIRRR 287
G AHL W IR R
Sbjct: 175 GVAHLTHFIGLLAGWVYIRIR 195
>gi|365925240|ref|ZP_09448003.1| rhomboid family integral membrane protein [Lactobacillus mali KCTC
3596 = DSM 20444]
gi|420266562|ref|ZP_14769020.1| Integral membrane protein, Rhomboid family [Lactobacillus mali KCTC
3596 = DSM 20444]
gi|394425142|gb|EJE98158.1| Integral membrane protein, Rhomboid family [Lactobacillus mali KCTC
3596 = DSM 20444]
Length = 216
Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 12/100 (12%)
Query: 126 VVYGLIIANTAVFMLWRIADP--------KFMANNFTISLDNFLSGRLHTLITSAFSHID 177
V Y L+ N VF+L +A +F A T+ ++G+ LIT F HI
Sbjct: 7 VTYTLLGINVLVFILMTLAGGSQSVGVLVEFGAKVNTL----IVAGQWWRLITPMFLHIG 62
Query: 178 VEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
EHIV NMI LYF G+ + LG L +Y+ I G++
Sbjct: 63 FEHIVLNMITLYFVGIQLENILGRGRFLAVYLVSGIAGNL 102
>gi|396483794|ref|XP_003841791.1| similar to Integral membrane protease of the rhomboid family
involved in different forms of regulated intramembrane
proteolysis (ISS) [Leptosphaeria maculans JN3]
gi|312218366|emb|CBX98312.1| similar to Integral membrane protease of the rhomboid family
involved in different forms of regulated intramembrane
proteolysis (ISS) [Leptosphaeria maculans JN3]
Length = 264
Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 91/246 (36%), Gaps = 47/246 (19%)
Query: 71 PLLARRFFTSLLSSQLRKSFFDGKVLFFRAQFPERSFASFRYRWRSWL-RQYGSSEVVYG 129
PL + FT L ++F+ R Q P R S Y + + + V+Y
Sbjct: 10 PLRSLPSFTPSRPRPLPRNFYP------RTQIPPRPRLSRSYETNPFASHEKANMRVLYA 63
Query: 130 LIIANTAVF-MLWRIADPKFMAN---------NFTISLDNFLSGRLHTLITSAFSHIDVE 179
L+ N +VF + + N N +++LD+ G L TS F+HID+
Sbjct: 64 LMAVNVSVFGYAIYVREAARQGNKQPWLHFIRNMSLNLDDVRQGHWWLLFTSTFTHIDLS 123
Query: 180 HIVSNMIGLYFFGMSIGR--TLGPEYLLKLYMAGAIGGSVFYLV-------------YHA 224
HI SN+ ++F G + R + P + M + GS +L Y
Sbjct: 124 HIFSNLFTVFFLGRFLARHPIITPTRYFVIAMGSGLSGSFGWLANRYAQERNPLSRKYVR 183
Query: 225 FLAMSSKRQGMWVVDPSRTPALGVFLIG---------------KDMLRIIEGNSNISGSA 269
L S G+ V P+ V L G D + + S + +
Sbjct: 184 GLGFSGVVMGISSVAACLMPSAKVHLYGIIPVPMWALVAGYAAYDGYYLNDETSKVGHAG 243
Query: 270 HLGGAA 275
HLGG+A
Sbjct: 244 HLGGSA 249
>gi|389795854|ref|ZP_10198963.1| hypothetical protein UU9_16426 [Rhodanobacter fulvus Jip2]
gi|388430185|gb|EIL87379.1| hypothetical protein UU9_16426 [Rhodanobacter fulvus Jip2]
Length = 217
Score = 44.3 bits (103), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 80/184 (43%), Gaps = 43/184 (23%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTI---SLDNFL---SGRLHT-------LITSAFSHI 176
L+IAN VF+L ++ + + F + D+ + SG L + L++ AF H
Sbjct: 12 LLIANVVVFLLQQVFG-EMLLQYFALWPWGPDHVMQLSSGALASVGFRPWQLVSYAFMHG 70
Query: 177 DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAI----------------------- 213
V HI+ NMI LY FG I RT G + Y AI
Sbjct: 71 GVTHILFNMIALYMFGGVIERTFGARNFVIYYFVCAIVAAVAQLIVVQWFTHGFYPTLGA 130
Query: 214 GGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG----NSNISGSA 269
G+VF L+ AF + + M + P PA +F+IG ++ ++ G + ++ A
Sbjct: 131 SGAVFGLLL-AFGMLYPHEKVMLIFLPVPMPAW-LFVIGYALVELVMGVTSTQAGVAHFA 188
Query: 270 HLGG 273
HLGG
Sbjct: 189 HLGG 192
>gi|422323889|ref|ZP_16404926.1| hypothetical protein HMPREF0737_00036 [Rothia mucilaginosa M508]
gi|353344682|gb|EHB88983.1| hypothetical protein HMPREF0737_00036 [Rothia mucilaginosa M508]
Length = 276
Score = 44.3 bits (103), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 13/162 (8%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHI--DVEHIV 182
+ Y LI+ N A++ L +I +++ + I G + +I+ F H+ D H+V
Sbjct: 79 HITYTLILINVAMYGLQQIIPNEWVVRHGNIWWPYVQHGEYYRVISYGFLHMQHDPMHLV 138
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMW------ 236
NMI L+ +G+S+ R +G L +Y+ I G++ V ++ G++
Sbjct: 139 WNMISLFIYGVSLERMMGRWKFLVVYLGSIIFGALGVYVLAPGTSVVGASGGLFGLMGSF 198
Query: 237 -----VVDPSRTPALGVFLIGKDMLRIIEGNSNISGSAHLGG 273
+ T + V + +++ I SNIS + H GG
Sbjct: 199 LTLLIIRKQKDTARVFVMITAPNIIYSIMTPSNISHACHAGG 240
>gi|431796163|ref|YP_007223067.1| hypothetical protein Echvi_0782 [Echinicola vietnamensis DSM 17526]
gi|430786928|gb|AGA77057.1| putative membrane protein [Echinicola vietnamensis DSM 17526]
Length = 306
Score = 44.3 bits (103), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 27/147 (18%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA-- 224
++ T F H + HI+ NM+ LY+FG+ + LG L LY+ G + G+V Y++ +
Sbjct: 72 SIFTYMFMHEGIFHILFNMLFLYWFGLLVQEYLGSRKLANLYILGGLAGAVLYVIMYNVA 131
Query: 225 -----------FLAMSSKRQGMWVVDPSRTP--ALGVFLIGKDMLRII-----------E 260
L S+ + V + TP + L+G ++ I
Sbjct: 132 PYFIEQRDAALMLGASAGVYAIVVGAATLTPDTTFHLLLLGPVKIKYIAIFYVVIAFANS 191
Query: 261 GNSNISGS-AHLGGAAVAALAWARIRR 286
+N G AHLGGAA+ L +R+
Sbjct: 192 TGANAGGELAHLGGAAIGYLYITMLRK 218
>gi|23099378|ref|NP_692844.1| hypothetical protein OB1923 [Oceanobacillus iheyensis HTE831]
gi|22777607|dbj|BAC13879.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 518
Score = 44.3 bits (103), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 161 LSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
+ G L+TS F HI HI+ NM+ L++ G ++ R G L +Y G I GS+
Sbjct: 226 MEGEWWRLLTSMFLHIGFVHILMNMVALFYLGTAVERIFGRTRFLVIYFLGGIAGSI 282
>gi|441518028|ref|ZP_20999756.1| hypothetical protein GOHSU_24_00060 [Gordonia hirsuta DSM 44140 =
NBRC 16056]
gi|441455057|dbj|GAC57717.1| hypothetical protein GOHSU_24_00060 [Gordonia hirsuta DSM 44140 =
NBRC 16056]
Length = 244
Score = 44.3 bits (103), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Query: 126 VVYGLIIANTAVF---MLWRIADPKF--MANNFTISLDNFLSGRLHTLITSAFSHIDVEH 180
V YGLI N +F M + + K + N+ + + L L+TS F H V H
Sbjct: 26 VTYGLIAVNLVLFAAAMAQSVGNAKASSIMNDGALYSNRHLVFEYWRLLTSGFLHSSVPH 85
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
+ NMI LY G + R GP L +Y+ GGS L++
Sbjct: 86 LALNMISLYIVGRELERLFGPARYLTIYLMSLFGGSAAVLLFQ 128
>gi|441514647|ref|ZP_20996463.1| rhomboid family protein [Gordonia amicalis NBRC 100051]
gi|441450558|dbj|GAC54424.1| rhomboid family protein [Gordonia amicalis NBRC 100051]
Length = 294
Score = 44.3 bits (103), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 60/142 (42%), Gaps = 11/142 (7%)
Query: 101 QFPERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLW----RIADPK----FMANN 152
Q P R R+ L + G V Y LI N VF+L DP F + +
Sbjct: 46 QTPAFGDRGIRRMARTRLSE-GKPYVTYTLIGINILVFLLCVAQAGFGDPGAATIFSSGD 104
Query: 153 FTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGA 212
S + +G L+TS F H V H+ NM+ LY G + LG L +Y+
Sbjct: 105 LLKS--DVAAGEYWRLLTSGFLHFSVMHVAVNMLSLYILGRDLELALGMARYLAVYLIAL 162
Query: 213 IGGSVFYLVYHAFLAMSSKRQG 234
+GGS +++ A+++ G
Sbjct: 163 LGGSAAVMLFENDRALTAGASG 184
>gi|341819922|emb|CCC56137.1| s54 family peptidase [Weissella thailandensis fsh4-2]
Length = 225
Score = 44.3 bits (103), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 26/141 (18%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIG------------- 214
+IT+ F H+ + H+V NMI LY+ G + + G Y+A A+G
Sbjct: 62 MITAGFLHVTLMHLVLNMITLYYVGRLLEQYFGSVRYFIGYIA-AVGLGSLNSLAFGSAN 120
Query: 215 -------GSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEGNSNISG 267
G +F L FL +QG W+ ++ LG+F+I ++ +I G SNI+
Sbjct: 121 AISAGASGGIFGLFGMIFLMGLLDKQGFWL---AQAKTLGLFVI-LSLIPVI-GGSNIAI 175
Query: 268 SAHLGGAAVAALAWARIRRRG 288
SAH+GG A L + ++G
Sbjct: 176 SAHIGGLAGGFLLAPLLLKKG 196
>gi|254556483|ref|YP_003062900.1| hypothetical protein JDM1_1316 [Lactobacillus plantarum JDM1]
gi|308180426|ref|YP_003924554.1| integral membrane protein [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|448821092|ref|YP_007414254.1| Membrane-bound protease, rhomboid family [Lactobacillus plantarum
ZJ316]
gi|254045410|gb|ACT62203.1| integral membrane protein [Lactobacillus plantarum JDM1]
gi|308045917|gb|ADN98460.1| integral membrane protein [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|448274589|gb|AGE39108.1| Membrane-bound protease, rhomboid family [Lactobacillus plantarum
ZJ316]
Length = 227
Score = 44.3 bits (103), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
Query: 115 RSWLRQYGSSEVVYGLIIANTAVFML-WRIADPKFMANNFTISLDN--FLSGRLHTLITS 171
R W + ++V+ G+ +A VF++ W + D + N + +N +G+ L+T
Sbjct: 6 RWWQTEPAITQVLLGITVA---VFLVEWLMGDGAMLIFNSLGAKNNQAIAAGQWWRLVTP 62
Query: 172 AFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
F H+ + HI N + +YF GM I G +L +Y+ G I G++
Sbjct: 63 MFLHMGLTHIALNGVVIYFMGMQIEAMYGHWRMLAIYILGGISGNI 108
>gi|399926186|ref|ZP_10783544.1| rhomboid family protein [Myroides injenensis M09-0166]
Length = 284
Score = 44.3 bits (103), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 21/129 (16%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
TL+T +F H + H++ NM+ LYF + L Y+ GA+ G +F+L+ FL
Sbjct: 65 TLLTYSFIHAGIVHLILNMLVLYFVYQLFRTFFNDKQFLTCYLLGAMVGGIFFLIGSLFL 124
Query: 227 AMSSKRQG--MWVVDP-----SRTPALGV--FLIGK----------DMLRIIE-GNSNIS 266
+ S G V+ P + +P + V L+G+ +L II+ +SNI
Sbjct: 125 PVGSVLVGASAAVIAPLIGLVTYSPNMEVRLMLVGRVKIWYIAAFIILLDIIQLSSSNIG 184
Query: 267 GS-AHLGGA 274
G AHLGGA
Sbjct: 185 GHLAHLGGA 193
>gi|418630551|ref|ZP_13193032.1| peptidase, S54 family [Staphylococcus epidermidis VCU128]
gi|374837741|gb|EHS01304.1| peptidase, S54 family [Staphylococcus epidermidis VCU128]
Length = 486
Score = 44.3 bits (103), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 24/168 (14%)
Query: 126 VVYGLIIANTAVFM-----LWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEH 180
+ Y LI+ N +++ L R +D K + + N + G + LI+S F H + EH
Sbjct: 159 ITYTLILINIVIWLCMILYLNRFSDVKLLEVGGLVHF-NVVHGEWYRLISSMFLHFNFEH 217
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA-----------FLAMS 229
I+ NM+ L+ FG + +G +L +Y+ + G+ L ++ F +
Sbjct: 218 ILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTSTISVGASGAIFGLIG 277
Query: 230 SKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG----NSNISGSAHLGG 273
S M++ +G LI L ++ G SNI+ AHLGG
Sbjct: 278 SIFVIMYLSKNFNKKMIGQLLIA---LVVLIGFSLFMSNINIMAHLGG 322
>gi|383115324|ref|ZP_09936082.1| hypothetical protein BSGG_2794 [Bacteroides sp. D2]
gi|313695259|gb|EFS32094.1| hypothetical protein BSGG_2794 [Bacteroides sp. D2]
Length = 301
Score = 44.3 bits (103), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 57/136 (41%), Gaps = 29/136 (21%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV-YHAF 225
+L T F H + HI+ NM+ LY+FG ++L LY+ G I G Y+V Y+ F
Sbjct: 68 SLFTYMFMHAGILHILFNMLWLYWFGSLFLYFFSAKHLRGLYVLGGICGGFLYMVAYNVF 127
Query: 226 LAMSSKRQGMWVVDPS---------------------------RTPALGVFLIGKDMLRI 258
SS+ G +V S R L + +IG D+L I
Sbjct: 128 PLFSSQVAGATLVGASASVLAIVAATAYREPNYRVQLFLFGAIRLKYLALIVIGIDVLSI 187
Query: 259 IEGNSNISGSAHLGGA 274
N+ AHLGGA
Sbjct: 188 TSSNAG-GHIAHLGGA 202
>gi|242242821|ref|ZP_04797266.1| rhomboid family protein [Staphylococcus epidermidis W23144]
gi|420174687|ref|ZP_14681135.1| rhomboid family protein [Staphylococcus epidermidis NIHLM061]
gi|420192300|ref|ZP_14698160.1| rhomboid family protein [Staphylococcus epidermidis NIHLM023]
gi|242233722|gb|EES36034.1| rhomboid family protein [Staphylococcus epidermidis W23144]
gi|394244591|gb|EJD89926.1| rhomboid family protein [Staphylococcus epidermidis NIHLM061]
gi|394261511|gb|EJE06308.1| rhomboid family protein [Staphylococcus epidermidis NIHLM023]
Length = 486
Score = 44.3 bits (103), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 24/168 (14%)
Query: 126 VVYGLIIANTAVFM-----LWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEH 180
+ Y LI+ N +++ L R +D K + + N + G + LI+S F H + EH
Sbjct: 159 ITYTLILINIVIWLCMILYLNRFSDVKLLEVGGLVHF-NVVHGEWYRLISSMFLHFNFEH 217
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA-----------FLAMS 229
I+ NM+ L+ FG + +G +L +Y+ + G+ L ++ F +
Sbjct: 218 ILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTSTISVGASGAIFGLIG 277
Query: 230 SKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG----NSNISGSAHLGG 273
S M++ +G LI L ++ G SNI+ AHLGG
Sbjct: 278 SIFVIMYLSKNFNKKMIGQLLIA---LVVLIGFSLFMSNINIMAHLGG 322
>gi|416125288|ref|ZP_11595886.1| rhomboid family protein [Staphylococcus epidermidis FRI909]
gi|420178246|ref|ZP_14684579.1| rhomboid family protein [Staphylococcus epidermidis NIHLM057]
gi|420180055|ref|ZP_14686315.1| rhomboid family protein [Staphylococcus epidermidis NIHLM053]
gi|319400885|gb|EFV89104.1| rhomboid family protein [Staphylococcus epidermidis FRI909]
gi|394246872|gb|EJD92124.1| rhomboid family protein [Staphylococcus epidermidis NIHLM057]
gi|394251487|gb|EJD96572.1| rhomboid family protein [Staphylococcus epidermidis NIHLM053]
Length = 486
Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 24/168 (14%)
Query: 126 VVYGLIIANTAVFM-----LWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEH 180
+ Y LI+ N +++ L R +D K + + N + G + LI+S F H + EH
Sbjct: 159 ITYTLILINIVIWLCMILYLNRFSDVKLLEVGGLVHF-NVVHGEWYRLISSMFLHFNFEH 217
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA-----------FLAMS 229
I+ NM+ L+ FG + +G +L +Y+ + G+ L ++ F +
Sbjct: 218 ILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTSTISVGASGAIFGLIG 277
Query: 230 SKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG----NSNISGSAHLGG 273
S M++ +G LI L ++ G SNI+ AHLGG
Sbjct: 278 SIFVIMYLSKNFNKKMIGQLLIA---LVVLIGFSLFMSNINIMAHLGG 322
>gi|418325502|ref|ZP_12936708.1| peptidase, S54 family [Staphylococcus epidermidis VCU071]
gi|365228104|gb|EHM69289.1| peptidase, S54 family [Staphylococcus epidermidis VCU071]
Length = 486
Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 18/165 (10%)
Query: 126 VVYGLIIANTAVFM-----LWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEH 180
+ Y LI+ N +++ L R +D K + + N + G + LI+S F H + EH
Sbjct: 159 ITYTLILINIVIWLCMILYLNRFSDVKLLEVGGLVHF-NVVHGEWYRLISSMFLHFNFEH 217
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA-----------FLAMS 229
I+ NM+ L+ FG + +G +L +Y+ + G+ L ++ F +
Sbjct: 218 ILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIG 277
Query: 230 SKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG-NSNISGSAHLGG 273
S M++ +G LI +L + SNI+ AHLGG
Sbjct: 278 SIFVIMYLSKNFNKKMIGQLLIALFVLIVFSLFMSNINIMAHLGG 322
>gi|418614697|ref|ZP_13177659.1| peptidase, S54 family [Staphylococcus epidermidis VCU118]
gi|374819233|gb|EHR83361.1| peptidase, S54 family [Staphylococcus epidermidis VCU118]
Length = 486
Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 24/168 (14%)
Query: 126 VVYGLIIANTAVFM-----LWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEH 180
+ Y LI+ N +++ L R +D K + + N + G + LI+S F H + EH
Sbjct: 159 ITYTLILINIVIWLCMILYLNRFSDVKLLEVGGLVHF-NVVHGEWYRLISSMFLHFNFEH 217
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA-----------FLAMS 229
I+ NM+ L+ FG + +G +L +Y+ + G+ L ++ F +
Sbjct: 218 ILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTSTISVGASGAIFGLIG 277
Query: 230 SKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG----NSNISGSAHLGG 273
S M++ +G LI L ++ G SNI+ AHLGG
Sbjct: 278 SIFVIMYLSKNFNKKMIGQLLIA---LVVLIGFSLFMSNINIMAHLGG 322
>gi|111226097|ref|YP_716891.1| hypothetical protein FRAAL6764 [Frankia alni ACN14a]
gi|111153629|emb|CAJ65387.1| Hypothetical protein; putative membrane protein [Frankia alni
ACN14a]
Length = 252
Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 147 KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLK 206
F F I+ D+ + + L+T+AF H V HI+ NM LY G + LG L
Sbjct: 76 DFAMIGFRIAADD----QYYRLLTAAFLHAGVLHILFNMYALYLLGFQLEAILGRARYLG 131
Query: 207 LYMAGAIGGSVF 218
L++AGA+GG+
Sbjct: 132 LFVAGAVGGNTL 143
>gi|372208678|ref|ZP_09496480.1| peptidase S54, rhomboid domain-containing protein
[Flavobacteriaceae bacterium S85]
Length = 238
Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 7/124 (5%)
Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
R+ LIT F H + H+ NMIGLYF G + + G L Y++ IG S+ +L+
Sbjct: 45 RIWQLITGIFMHGSISHLFFNMIGLYFLGTPMLQLWGKNRFLFFYLSAGIGASLIFLLER 104
Query: 224 AFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLR-IIEGNSNISGSAHLGGAA-----VA 277
L + + + ++ G+F K I+E + I G+ LG + +A
Sbjct: 105 Q-LEFQNAMSELLAMGATKEELYGLFSDTKSFQNPIMETANRIYGTRLLGASGAIFGLLA 163
Query: 278 ALAW 281
A W
Sbjct: 164 AFGW 167
>gi|224476658|ref|YP_002634264.1| hypothetical protein Sca_1171 [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222421265|emb|CAL28079.1| putative membrane protein [Staphylococcus carnosus subsp. carnosus
TM300]
Length = 486
Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLD-----NFLSGRLHTLITSAFSHIDVEH 180
V YGLI N V++ + F ++ I L N + G + L+TS F H + EH
Sbjct: 158 VTYGLITINIIVWLFMFLVLNAF-SDTRLIDLGGLVHFNVVHGEWYRLVTSMFLHFNFEH 216
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
I+ NM+ L+ FG + +G +L +Y+ I G++
Sbjct: 217 ILMNMLSLFIFGKLVEAIVGHWKMLGIYLISGIFGNL 253
>gi|420184523|ref|ZP_14690632.1| rhomboid family protein [Staphylococcus epidermidis NIHLM040]
gi|394257174|gb|EJE02096.1| rhomboid family protein [Staphylococcus epidermidis NIHLM040]
Length = 486
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 18/165 (10%)
Query: 126 VVYGLIIANTAVFM-----LWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEH 180
+ Y LI+ N +++ L R +D K + + N + G + LI+S F H + EH
Sbjct: 159 ITYTLILINIVIWLCMILYLNRFSDVKLLEVGGLVHF-NVVHGEWYRLISSMFLHFNFEH 217
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA-----------FLAMS 229
I+ NM+ L+ FG + +G +L +Y+ + G+ L ++ F +
Sbjct: 218 ILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIG 277
Query: 230 SKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG-NSNISGSAHLGG 273
S M++ +G LI +L + SNI+ AHLGG
Sbjct: 278 SIFVIMYLSKNFNKKMIGQLLIALFVLIVFSLFMSNINIMAHLGG 322
>gi|289208543|ref|YP_003460609.1| rhomboid family protein [Thioalkalivibrio sp. K90mix]
gi|288944174|gb|ADC71873.1| Rhomboid family protein [Thioalkalivibrio sp. K90mix]
Length = 205
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 131 IIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYF 190
IIA T +W P+ + G LIT F H D H+ NMI L+F
Sbjct: 11 IIAGTVATSVWAWQRPRVL-ERMIYWPPAVARGEYWRLITHGFIHADGTHLAFNMITLFF 69
Query: 191 FGMSIGRTLGPEYLLKLYMAGAIGGSVFYL 220
FGM++ R L PE G +G FYL
Sbjct: 70 FGMAMERVLVPE-------IGVLGFVAFYL 92
>gi|119720561|ref|YP_921056.1| rhomboid family protein [Thermofilum pendens Hrk 5]
gi|119525681|gb|ABL79053.1| Rhomboid family protein [Thermofilum pendens Hrk 5]
Length = 444
Score = 43.9 bits (102), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 16/130 (12%)
Query: 124 SEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSG------RLHTLITSAFSHID 177
+ V G+I+ N AV+++ + ++ ++ F+ L+ L TS F H +
Sbjct: 17 APVTLGIILVNVAVYLVSSYENGFLAVSDAWVNAFAFVPAYFARPEHLYRLFTSMFLHAN 76
Query: 178 VEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWV 237
+ HI NM+ LY FG S+ LG E LY A I SVF + AFL +
Sbjct: 77 LAHIFFNMLYLYTFGKSVEAVLGSERYFLLYFASGILASVF---HTAFLPIEGASSAF-- 131
Query: 238 VDPSRTPALG 247
PALG
Sbjct: 132 -----VPALG 136
>gi|332716382|ref|YP_004443848.1| hypothetical protein AGROH133_11895 [Agrobacterium sp. H13-3]
gi|325063067|gb|ADY66757.1| hypothetical protein AGROH133_11895 [Agrobacterium sp. H13-3]
Length = 257
Score = 43.9 bits (102), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 33/149 (22%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T++T AF H+D H+ NM+ L+ FG ++ LG L Y+A AI G++ H F+
Sbjct: 75 TVVTYAFLHLDFWHMAGNMLFLWVFGDNVEDALGHFRFLIFYIACAIAGALL----HGFV 130
Query: 227 AMSSK----------------------RQGMWVVDPSRTP-ALGVFL-----IGKDMLRI 258
A S+ + +WV+ R P L F+ IG+ L +
Sbjct: 131 APMSEGPLIGASGAVSGVVAAYFLLHPKVRVWVLVFMRIPLPLPAFIPLALWIGQQFLML 190
Query: 259 IEG-NSNISGSAHLGGAAVAALAWARIRR 286
G N+S AH+GG A+ +RR
Sbjct: 191 ALGLEENVSWGAHVGGILAGAVMVIFMRR 219
>gi|420199483|ref|ZP_14705161.1| rhomboid family protein [Staphylococcus epidermidis NIHLM031]
gi|394272265|gb|EJE16734.1| rhomboid family protein [Staphylococcus epidermidis NIHLM031]
Length = 486
Score = 43.9 bits (102), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 24/168 (14%)
Query: 126 VVYGLIIANTAVFM-----LWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEH 180
+ Y LI+ N +++ L R +D K + + N + G + LI+S F H + EH
Sbjct: 159 ITYTLILINIVIWLCMILYLNRFSDVKLLEVGGLVHF-NVVHGEWYRLISSMFLHFNFEH 217
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA-----------FLAMS 229
I+ NM+ L+ FG + +G +L +Y+ + G+ L ++ F +
Sbjct: 218 ILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTSTISVGASGAIFGLIG 277
Query: 230 SKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG----NSNISGSAHLGG 273
S M++ +G LI L ++ G SNI+ AHLGG
Sbjct: 278 SIFVIMYLSKNFNKKMIGQLLIA---LVVLIGFSLFMSNINIMAHLGG 322
>gi|386319193|ref|YP_006015356.1| rhomboid family protein [Staphylococcus pseudintermedius ED99]
gi|323464364|gb|ADX76517.1| rhomboid family protein [Staphylococcus pseudintermedius ED99]
Length = 479
Score = 43.9 bits (102), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
N + G + LITS F HI+ +H++ NM+ L+ FG + +GP +L Y+ I G++
Sbjct: 195 NVVHGEWYRLITSMFLHIEFQHLLLNMLSLFIFGKLVEAFIGPLKMLGTYILSGIIGNLI 254
Query: 219 YL 220
L
Sbjct: 255 SL 256
>gi|319892596|ref|YP_004149471.1| membrane peptidase [Staphylococcus pseudintermedius HKU10-03]
gi|317162292|gb|ADV05835.1| Putative membrane peptidase, contains TPR repeat domain protein
[Staphylococcus pseudintermedius HKU10-03]
Length = 479
Score = 43.9 bits (102), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
N + G + LITS F HI+ +H++ NM+ L+ FG + +GP +L Y+ I G++
Sbjct: 195 NVVHGEWYRLITSMFLHIEFQHLLLNMLSLFIFGKLVEAFIGPLKMLGTYILSGIIGNLI 254
Query: 219 YL 220
L
Sbjct: 255 SL 256
>gi|242373854|ref|ZP_04819428.1| S54 family peptidase [Staphylococcus epidermidis M23864:W1]
gi|242348408|gb|EES40010.1| S54 family peptidase [Staphylococcus epidermidis M23864:W1]
Length = 303
Score = 43.9 bits (102), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 128 YGLIIANTAVFM-----LWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIV 182
Y LII N +++ L R +D K + + N + G + LITS F H + EHI+
Sbjct: 161 YLLIIINVVIWLCMILYLNRFSDVKLLDVGGLVHF-NVVHGEWYRLITSMFLHFNFEHIL 219
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS 216
NM+ L+ FG + +G +L +Y + G+
Sbjct: 220 MNMLSLFIFGKIVESIVGSWRMLIIYFISGLFGN 253
>gi|156936920|ref|YP_001434716.1| rhomboid family protein [Ignicoccus hospitalis KIN4/I]
gi|156565904|gb|ABU81309.1| Rhomboid family protein [Ignicoccus hospitalis KIN4/I]
Length = 258
Score = 43.9 bits (102), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
R +TL+T + H +EHI NM+ LY FG ++ LG L LY+ +G VF+L+
Sbjct: 75 REYTLLTHMWLHGSLEHIAGNMLFLYIFGDNVEAVLGRRGYLALYLLSGLGAVVFHLL-S 133
Query: 224 AFLAMSSKRQGMWVVDPSRTPALG 247
L S +P TPA+G
Sbjct: 134 VMLTPSIILNPYLRQNPWLTPAIG 157
>gi|418633195|ref|ZP_13195612.1| peptidase, S54 family [Staphylococcus epidermidis VCU129]
gi|420190163|ref|ZP_14696107.1| rhomboid family protein [Staphylococcus epidermidis NIHLM037]
gi|420204465|ref|ZP_14710023.1| rhomboid family protein [Staphylococcus epidermidis NIHLM015]
gi|374840014|gb|EHS03521.1| peptidase, S54 family [Staphylococcus epidermidis VCU129]
gi|394259054|gb|EJE03924.1| rhomboid family protein [Staphylococcus epidermidis NIHLM037]
gi|394273475|gb|EJE17906.1| rhomboid family protein [Staphylococcus epidermidis NIHLM015]
Length = 486
Score = 43.9 bits (102), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 24/168 (14%)
Query: 126 VVYGLIIANTAVFM-----LWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEH 180
+ Y LI+ N +++ L R +D K + + N + G + LI+S F H + EH
Sbjct: 159 ITYTLILINIVIWLCMILYLNRFSDVKLLEVGGLVHF-NVVHGEWYRLISSMFLHFNFEH 217
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA-----------FLAMS 229
I+ NM+ L+ FG + +G +L +Y+ + G+ L ++ F +
Sbjct: 218 ILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTSTISVGASGAIFGLIG 277
Query: 230 SKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG----NSNISGSAHLGG 273
S M++ +G LI L ++ G SNI+ AHLGG
Sbjct: 278 SIFVIMYLSKNFNKKMIGQLLIA---LVVLIGFSLFMSNINIMAHLGG 322
>gi|402831919|ref|ZP_10880589.1| peptidase, S54 family [Capnocytophaga sp. CM59]
gi|402280352|gb|EJU29063.1| peptidase, S54 family [Capnocytophaga sp. CM59]
Length = 266
Score = 43.9 bits (102), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 74/177 (41%), Gaps = 33/177 (18%)
Query: 140 LWRIADP---KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIG 196
LW+I P ++A +SL L+ R T +T +F H H V N I LYF G+
Sbjct: 37 LWQIETPFVRDYLALWQHVSL---LAKRPWTWLTYSFFHASFLHSVFNAIMLYFVGVLFM 93
Query: 197 RTLGPEYLLKLYMAGAIGGSVFYLVYHA-----------FLAMSSKRQGMWVVDPSRTPA 245
P+ L +Y+ G + G + ++V ++ L S+ + + TP+
Sbjct: 94 NLFTPKRFLAIYIGGVVAGGLLFMVLYSLLPAFAGHDDYLLGASAGIMAPLICLATYTPS 153
Query: 246 LGVFLIGK---------------DMLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 287
++L G D++ I GN+ AHLGGA V L ++ R
Sbjct: 154 YRIYLFGVFSLPLWSIGALMVLIDLVSIPIGNAG-GHIAHLGGALVGFLYACHLKGR 209
>gi|319948114|ref|ZP_08022278.1| rhomboid family protein [Dietzia cinnamea P4]
gi|319438225|gb|EFV93181.1| rhomboid family protein [Dietzia cinnamea P4]
Length = 244
Score = 43.9 bits (102), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNF--------LSGRLHTLITSAFSHIDVEHI 181
LI AN AV++ MAN+ + + + L+TSAF H H+
Sbjct: 24 LITANLAVYVATAAQARSIMANSASALFETTALFPPMVAVRDEWWRLLTSAFQHFGPMHL 83
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
+ NM L+ G+ I R++G L LY+ A+GGSV
Sbjct: 84 LLNMYMLWILGLGIERSIGHARFLGLYLVSALGGSV 119
>gi|377564810|ref|ZP_09794121.1| rhomboid family protein [Gordonia sputi NBRC 100414]
gi|377527964|dbj|GAB39286.1| rhomboid family protein [Gordonia sputi NBRC 100414]
Length = 234
Score = 43.9 bits (102), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 67/172 (38%), Gaps = 15/172 (8%)
Query: 128 YGLIIANTAVFMLWRIADPKFMAN------NFTISLDNFLSGRLHTLITSAFSHIDVEHI 181
Y LI N +F L I F A + + + +G L+T+ F H V HI
Sbjct: 15 YALIAVNVVIFALCVIQAKSFDAGLAPLFQHGDLVRADVANGEYWRLLTAGFLHFTVMHI 74
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQG------- 234
NMI LY G + LG L +Y GGS +++ A S+ G
Sbjct: 75 ALNMISLYILGRDLETALGHSRFLMVYFIALFGGSAAVMLFEAGNVRSAGASGAIYGLMG 134
Query: 235 --MWVVDPSRTPALGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARI 284
+ +V +R GV I L IS +AH+GG A A A +
Sbjct: 135 AMLVIVVKARISPTGVITIIVINLVFSVTMPGISLAAHVGGLVFGAAATAAV 186
>gi|154483847|ref|ZP_02026295.1| hypothetical protein EUBVEN_01551 [Eubacterium ventriosum ATCC
27560]
gi|149735338|gb|EDM51224.1| peptidase, S54 family [Eubacterium ventriosum ATCC 27560]
Length = 201
Score = 43.9 bits (102), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 77/186 (41%), Gaps = 33/186 (17%)
Query: 130 LIIANTAVFMLWR----IADPKFM-ANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
L+ N VF++ ++M A+ + + D F +G+ + ++TS F H EH+++N
Sbjct: 16 LVAINVVVFLVMEFFGSTESGEYMYAHGASYAPDIFENGQWYRILTSMFMHFGAEHLINN 75
Query: 185 MIGLYFFGMSIGRTLG-PEYLLKLYMAGAIGGSV--------------------FYLVYH 223
M+ LY G I G +YL+ ++ G GG + + ++
Sbjct: 76 MVMLYILGYQIEENFGRVKYLITYFICGIAGGIISSGIEMITGEYSISAGASGAIFGIFG 135
Query: 224 AFLAMSSK-RQGMWVVDPSRTPALGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWA 282
L M K R+ + V R L + ++ +M + AHLGGA +
Sbjct: 136 VLLVMIFKSRKQLGQVSAPRLILLFILMVFGNM------QEGVDWMAHLGGAVTGVVIAL 189
Query: 283 RIRRRG 288
I R G
Sbjct: 190 AIYRPG 195
>gi|392948666|ref|ZP_10314270.1| membrane-bound protease, rhomboid family [Lactobacillus pentosus
KCA1]
gi|392436103|gb|EIW14023.1| membrane-bound protease, rhomboid family [Lactobacillus pentosus
KCA1]
Length = 218
Score = 43.9 bits (102), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 124 SEVVYGLIIANTAVFML-WRIADPKFMANNFTISLDN--FLSGRLHTLITSAFSHIDVEH 180
++++ G+ +A VF++ W I D + N + +N +G+ IT F H+ + H
Sbjct: 6 TQIILGITVA---VFLIEWLIGDGATLVFNAIGAKNNQAIAAGQWWRFITPMFLHMGLTH 62
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
I N + +YF GM I G +L LYM G I G++
Sbjct: 63 IALNGVVIYFMGMQIEAMYGHWRMLALYMLGGISGNI 99
>gi|347831994|emb|CCD47691.1| hypothetical protein [Botryotinia fuckeliana]
Length = 598
Score = 43.9 bits (102), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM 185
V LI+ANT V LWR+ M N + + + + R ++I FSH H + NM
Sbjct: 390 TVSALILANTMVLFLWRVPPCWTMLNKYFMIIPAY--PRALSMIGGVFSHQAFTHFLPNM 447
Query: 186 IGLYFFGMSIGRTLGPEYLLKLY 208
+ L FG+ + +G L LY
Sbjct: 448 VFLAIFGVDLHDEVGRANFLSLY 470
>gi|339260682|ref|XP_003368283.1| conserved hypothetical protein [Trichinella spiralis]
gi|316962732|gb|EFV48749.1| conserved hypothetical protein [Trichinella spiralis]
Length = 268
Score = 43.9 bits (102), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 17/105 (16%)
Query: 129 GLIIANTAVFMLWRIADPK--------FMANNFTISLDNFLSGRLHTLITSAFSHIDVEH 180
G+I N AV++ W++ PK FM F SL +I S FSHI+ H
Sbjct: 139 GIIALNVAVYLAWKV--PKLHPLLKRYFMCGYFGASLCT-------PMIYSVFSHINFLH 189
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+ NM L+ FG ++ R G E + LY+ S+ L+ A
Sbjct: 190 MAVNMYVLWSFGPTLVRLTGLEQFVALYLTSGAVSSMCSLIIKAI 234
>gi|284162630|ref|YP_003401253.1| rhomboid family protein [Archaeoglobus profundus DSM 5631]
gi|284012627|gb|ADB58580.1| Rhomboid family protein [Archaeoglobus profundus DSM 5631]
Length = 225
Score = 43.9 bits (102), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
+ITS F H D H+ NM L+FFG + R LG L ++ A I G++ YLVY AFL
Sbjct: 75 IITSIFVHADFWHLFINMFVLFFFGNELERRLGERKYLIIFFASGIAGNLAYLVY-AFL 132
>gi|17549744|ref|NP_523084.1| hypothetical protein RS04802 [Ralstonia solanacearum GMI1000]
gi|17431999|emb|CAD18676.1| probable membrane transmembrane protein [Ralstonia solanacearum
GMI1000]
Length = 569
Score = 43.9 bits (102), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA 224
L+++ F H V H+ NMIGLY G+++ R GP L +Y+ + GS L + A
Sbjct: 256 LLSATFLHAGVLHLAVNMIGLYAAGVTVERIYGPVAYLLIYLGAGLLGSALSLSFAA 312
>gi|120436400|ref|YP_862086.1| rhomboid family protein [Gramella forsetii KT0803]
gi|117578550|emb|CAL67019.1| rhomboid family protein [Gramella forsetii KT0803]
Length = 215
Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 67/166 (40%), Gaps = 21/166 (12%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLY 189
L+I V + ++ + N + ++ + G + ++TS F H+D H+ NM+ LY
Sbjct: 9 LVIIGVNVLISFKGFSDQAFFNKYKFNVADIKGGAKYQILTSGFLHVDTSHLFVNMLTLY 68
Query: 190 FFGMSIGRTLGPEYLLKLYMAG-------------------AIG--GSVFYLVYHAFLAM 228
FF + +G L +Y+ A+G G+V ++Y A L
Sbjct: 69 FFANVVIYGIGTTAFLLIYIGSLLFGNLVSYFFHKKDYQYTAVGASGAVMGILYSAILLQ 128
Query: 229 SSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEGNSNISGSAHLGGA 274
G++ V P G+ + + + NI AH GGA
Sbjct: 129 PDMTLGLFFVIPVPAYVFGIGYLFYTIYGMKRRTDNIGHDAHFGGA 174
>gi|430005333|emb|CCF21134.1| conserved membrane protein of unknown function [Rhizobium sp.]
Length = 248
Score = 43.9 bits (102), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 33/151 (21%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T +T AF H+D H+ SNM+ L+ FG ++ LG L Y+ A G++ HA +
Sbjct: 74 TYVTYAFIHLDFWHLASNMVFLWVFGDNVEDALGHVRFLVFYLLCAAAGAML----HAVI 129
Query: 227 AMSSK----------------------RQGMWVVDPSRTP-------ALGVFLIGKDMLR 257
A +S+ R +WV+ R P L ++L+ + +
Sbjct: 130 APASEGPLIGASGAISGVVAAYFILHPRVRLWVLVLFRIPLPFPAFIPLTLWLLQQFAML 189
Query: 258 IIEGNSNISGSAHLGGAAVAALAWARIRRRG 288
++ + +S AH+GG A+ +RR+G
Sbjct: 190 ALDLDGMVSWGAHVGGILAGAILILFMRRKG 220
>gi|423349693|ref|ZP_17327349.1| hypothetical protein HMPREF9156_00887 [Scardovia wiggsiae F0424]
gi|393702809|gb|EJD65012.1| hypothetical protein HMPREF9156_00887 [Scardovia wiggsiae F0424]
Length = 302
Score = 43.9 bits (102), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 164 RLHTLITSAFSHI--DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
R T++T+ F H D HI+ NMI LY GM + R LG L LY+ GSV Y++
Sbjct: 114 RPWTMLTNLFLHAVPDPSHILFNMISLYIGGMMLERLLGHWEFLALYLISGFAGSVMYVI 173
Query: 222 YHAF 225
+ +
Sbjct: 174 WWTY 177
>gi|418048760|ref|ZP_12686847.1| Peptidase S54, rhomboid domain protein [Mycobacterium rhodesiae
JS60]
gi|353189665|gb|EHB55175.1| Peptidase S54, rhomboid domain protein [Mycobacterium rhodesiae
JS60]
Length = 248
Score = 43.9 bits (102), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 122 GSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHI 181
G V YGLI N +F+L K + + G + L+TSAF H H+
Sbjct: 35 GQPLVTYGLIAVNVVMFVLQM--TSKNLERELVLWAPGVAGGEYYRLVTSAFMHYGALHL 92
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
+ NM LY G + LG LY A+GGSV LVY
Sbjct: 93 LFNMWALYVIGPPLESWLGRLRFGALYALSALGGSV--LVY 131
>gi|321465959|gb|EFX76957.1| hypothetical protein DAPPUDRAFT_306013 [Daphnia pulex]
Length = 253
Score = 43.9 bits (102), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 6/114 (5%)
Query: 108 ASFRYRWRSWLRQYGSSE---VVYGLIIANTAVFMLWRI-ADPKFMANNFTISLDNFLSG 163
SFR + W +E + Y +++ANT V + WRI A +FM + F + F
Sbjct: 26 GSFRNQMNHWWNSQNMTEGQKLFYCILLANTTVLLAWRIPALTQFMISYFCS--NPFARA 83
Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
++ S FSH H +NM LY F + +G E L Y++ + S+
Sbjct: 84 VCWPMVFSTFSHHSFLHFGANMYVLYSFMNATTHYMGKEQFLAFYLSAGVISSL 137
>gi|406669543|ref|ZP_11076813.1| hypothetical protein HMPREF9707_00716 [Facklamia ignava CCUG 37419]
gi|405583239|gb|EKB57207.1| hypothetical protein HMPREF9707_00716 [Facklamia ignava CCUG 37419]
Length = 228
Score = 43.9 bits (102), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Query: 126 VVYGLIIANTAVF--MLWRIADPK----FMANNFTISLDNFLSGRLHTLITSAFSHIDVE 179
V YGLI N AV+ ML+ + + S +L IT++F HI E
Sbjct: 14 VTYGLITLNIAVYGWMLYHYRTTESIDALIQTGAMYSPLVYLQNEWWRFITASFIHIGFE 73
Query: 180 HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
H + NMI LYF G I LG +Y+ +GG++F
Sbjct: 74 HFIFNMITLYFLGKDIEALLGHFNFSCIYLFACVGGNLF 112
>gi|432952460|ref|XP_004085084.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like [Oryzias latipes]
Length = 364
Score = 43.9 bits (102), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 126 VVYGLIIANTAVFMLWRIAD-PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVS 183
V G+I N AVF+ WR+ + M FT N S L + ++ S FSH H+ +
Sbjct: 151 TVTGIIAVNAAVFLCWRVPSLQRSMVKYFT---SNPASKTLCSPMLLSTFSHFSFFHMAA 207
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYM-AGAIGGSVFYL 220
NM L+ F S LG E + +Y+ AG + V Y+
Sbjct: 208 NMYVLWSFSSSAVSMLGREQFMAVYLSAGVVSSFVSYV 245
>gi|296268056|ref|YP_003650688.1| rhomboid family protein [Thermobispora bispora DSM 43833]
gi|296090843|gb|ADG86795.1| Rhomboid family protein [Thermobispora bispora DSM 43833]
Length = 286
Score = 43.5 bits (101), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 69/161 (42%), Gaps = 16/161 (9%)
Query: 142 RIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVE---HIVSNMIGLYFFGMSIGRT 198
+ DP+ + + + + G LITSAF H HI+ NM LY G + R
Sbjct: 96 EVLDPERVISAYGMWSIGVYQGEWWRLITSAFLHAPPPSFWHILFNMWALYVIGPDLERL 155
Query: 199 LGPEYLLKLYMAGAIGGSV-FYLVYHAFLAMSSKRQGMW-----VVDPSRTPALGV-FLI 251
LG LY+ A+GGSV YL A L S G++ V T GV +LI
Sbjct: 156 LGSARFAALYLLSALGGSVAIYLFGVAALGASGAIYGLFGALFVVARRLGTDVRGVLWLI 215
Query: 252 GKDMLRIIEGNSNISGSAHLGG-----AAVAALAWARIRRR 287
G ++L I IS HLGG A L +A R R
Sbjct: 216 GINVL-ITFVVPGISWQGHLGGLVTGTVVAAGLVYAPERHR 255
>gi|295837743|ref|ZP_06824676.1| rhomboid family protein [Streptomyces sp. SPB74]
gi|295826650|gb|EFG64961.1| rhomboid family protein [Streptomyces sp. SPB74]
Length = 338
Score = 43.5 bits (101), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 70/171 (40%), Gaps = 24/171 (14%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLS---------GRLHTLITSAFSHIDVEH 180
LI N AVF+L + A + + + F S G + L+T+ F H +V H
Sbjct: 131 LIALNLAVFVLVKAAPDSARLLDDLVMVARFPSYPQPIGVAEGEWYRLLTATFLHEEVWH 190
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQG------ 234
I NM+ L+ G I LG L LY+ +GGSV ++ L S G
Sbjct: 191 IGLNMLSLWMLGGPIEALLGRARFLTLYLLAGVGGSVASFLFADPLGASLGASGAIFGLF 250
Query: 235 ------MWVVDPSRTPALGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAAL 279
+ V P + + +I L I G S I+ AH+GG V L
Sbjct: 251 GATGVLVLRVRADFRPFVALLVIN---LIITFGWSGIAWQAHIGGLVVGTL 298
>gi|386335464|ref|YP_006031634.1| transmembrane hypothetical [Ralstonia solanacearum Po82]
gi|334197914|gb|AEG71098.1| transmembrane hypothetical [Ralstonia solanacearum Po82]
Length = 569
Score = 43.5 bits (101), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 18/124 (14%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
L+++ F H V H+ NM+GLY G+++ R GP L Y+ + GS L + A A
Sbjct: 256 LLSATFLHAGVLHLAINMVGLYATGIAVERIYGPAAYLLTYLGAGLLGSALSLSFAAQHA 315
Query: 228 MSSKRQ-------GMWVVDPSRTPALGVFLIGKDML---------RIIEG--NSNISGSA 269
+ G W+V R L + K +L +++G + +A
Sbjct: 316 IGVGASGAVFGVAGAWLVAIGRYRGLMPQTLSKRLLTQLGLFVLYSLVQGLTKPGVDNAA 375
Query: 270 HLGG 273
H+GG
Sbjct: 376 HIGG 379
>gi|408371345|ref|ZP_11169112.1| peptidase s54, rhomboid domain protein [Galbibacter sp. ck-I2-15]
gi|407743175|gb|EKF54755.1| peptidase s54, rhomboid domain protein [Galbibacter sp. ck-I2-15]
Length = 215
Score = 43.5 bits (101), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 28/132 (21%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH---- 223
++TS F H+D+ H++ NM+ LYFF + LG L +Y+ + G+V +++H
Sbjct: 46 ILTSGFLHVDMTHLLFNMLTLYFFAPIVVVYLGSVKFLIIYLISLVAGNVLSMIFHKNEY 105
Query: 224 -----------------AFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEGN---- 262
A L R G + + P PA +F IG +L I G
Sbjct: 106 HYSAVGASGAVTGILYAAILLQPDMRLGFFFI-PIPVPAY-IFGIGY-LLYSIYGMRNRV 162
Query: 263 SNISGSAHLGGA 274
NI +AH GGA
Sbjct: 163 GNIGHTAHFGGA 174
>gi|359442292|ref|ZP_09232162.1| hypothetical protein P20429_2538 [Pseudoalteromonas sp. BSi20429]
gi|358035903|dbj|GAA68411.1| hypothetical protein P20429_2538 [Pseudoalteromonas sp. BSi20429]
Length = 361
Score = 43.5 bits (101), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 126 VVYGLIIANTAVFMLWRIADPKF--MANNFTISLDNFLSG-RLHTLITSAFSHIDVEHIV 182
V GLI+ NT +F L+ + F + +NF ++ + G L T++T F H + H+V
Sbjct: 154 VTRGLIVLNTLIFALYFLNPSSFSYVIDNFAMTPADLSKGNELWTVLTCVFLHGSIMHLV 213
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMAGAI 213
NM LY G ++ LG + L Y+A +
Sbjct: 214 GNMYFLYIVGDNLEDVLGHKRFLLWYLACGL 244
>gi|262405996|ref|ZP_06082546.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294647972|ref|ZP_06725523.1| peptidase, S54 (rhomboid) family protein [Bacteroides ovatus SD CC
2a]
gi|294806914|ref|ZP_06765739.1| peptidase, S54 (rhomboid) family protein [Bacteroides xylanisolvens
SD CC 1b]
gi|345510502|ref|ZP_08790069.1| rhomboid protein [Bacteroides sp. D1]
gi|229443212|gb|EEO49003.1| rhomboid protein [Bacteroides sp. D1]
gi|262356871|gb|EEZ05961.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292636688|gb|EFF55155.1| peptidase, S54 (rhomboid) family protein [Bacteroides ovatus SD CC
2a]
gi|294445943|gb|EFG14585.1| peptidase, S54 (rhomboid) family protein [Bacteroides xylanisolvens
SD CC 1b]
Length = 301
Score = 43.5 bits (101), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 30/150 (20%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV-YHAF 225
+L T F H + HI+ NM+ LY+FG ++L LY+ G I G + Y++ Y+ F
Sbjct: 68 SLFTYMFMHAGILHILFNMLWLYWFGSLFLYFFSAKHLRGLYVLGGICGGLLYMIAYNVF 127
Query: 226 LAMSSKRQGMWVVDPS---------------------------RTPALGVFLIGKDMLRI 258
SS+ G +V S R L + +IG D+L I
Sbjct: 128 PLFSSQVVGSTLVGASASVLAIVAATAYREPNYRVQLFLFGAIRLKYLALVVIGIDVLSI 187
Query: 259 IEGNSNISGSAHLGGAAVAALAWARIRRRG 288
N+ AHLGG A+A L +A +G
Sbjct: 188 TSSNAG-GHIAHLGG-ALAGLWFAASLNKG 215
>gi|294055651|ref|YP_003549309.1| rhomboid family protein [Coraliomargarita akajimensis DSM 45221]
gi|293614984|gb|ADE55139.1| Rhomboid family protein [Coraliomargarita akajimensis DSM 45221]
Length = 312
Score = 43.5 bits (101), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 148 FMANNFTISLDNFLSGRLHTLITSAFSHIDVE--HIVSNMIGLYFFGMSIGRTLGPEYLL 205
F+ F +S F +L T+ T F H HI+ NM+GL+F G I LG +
Sbjct: 56 FLTQWFALSGYGFQQFKLWTIWTYGFLHSTQGFFHILGNMLGLFFIGRMIEPVLGKAKFV 115
Query: 206 KLYMAGAIGGSVFYLVYH 223
LY +GA+ G + YL +H
Sbjct: 116 GLYFSGALLGGLAYLFFH 133
>gi|86133301|ref|ZP_01051883.1| rhomboid family protein [Polaribacter sp. MED152]
gi|85820164|gb|EAQ41311.1| rhomboid family protein [Polaribacter sp. MED152]
Length = 285
Score = 43.5 bits (101), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 76/191 (39%), Gaps = 37/191 (19%)
Query: 120 QYGSSEVVYGLIIANTAVFMLWRIAD--PKFMAN--NFTI---SLDNFLSGRLH---TLI 169
+Y +V LI N AVF++ + + AN NF + +LDN ++ TL+
Sbjct: 10 RYKQGNIVEKLIYINIAVFVITILINVLQGLYANSTNFIVNWFALDNSINALFTKPWTLL 69
Query: 170 TSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMS 229
+ F H D HI+ N+I +Y+ G + LL Y+ G G V YL + +
Sbjct: 70 SYGFLHADFLHILMNLIVIYYIGNLFLEYFTQKQLLTFYLLGTFFGGVLYLFSQNYFPLF 129
Query: 230 SKRQGMWVVDPSRTPA--------------------------LGVFLIGKDMLRIIEGNS 263
+ V + A L F IG D++ +I GN+
Sbjct: 130 EGDNSVLVGASAGISAIFIGIATYIPNYQIKLRFIGFVKLWHLAAFWIGLDIISLI-GNN 188
Query: 264 NISGSAHLGGA 274
AHLGGA
Sbjct: 189 AGGHFAHLGGA 199
>gi|423214240|ref|ZP_17200768.1| hypothetical protein HMPREF1074_02300 [Bacteroides xylanisolvens
CL03T12C04]
gi|392693185|gb|EIY86420.1| hypothetical protein HMPREF1074_02300 [Bacteroides xylanisolvens
CL03T12C04]
Length = 301
Score = 43.5 bits (101), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 30/150 (20%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV-YHAF 225
+L T F H + HI+ NM+ LY+FG ++L LY+ G I G + Y++ Y+ F
Sbjct: 68 SLFTYMFMHAGILHILFNMLWLYWFGSLFLYFFSAKHLRGLYVLGGICGGLLYMIAYNVF 127
Query: 226 LAMSSKRQGMWVVDPS---------------------------RTPALGVFLIGKDMLRI 258
SS+ G +V S R L + +IG D+L I
Sbjct: 128 PLFSSQVVGSTLVGASASVLAIVAATAYREPNYRVQLFLFGAIRLKYLALVVIGIDVLSI 187
Query: 259 IEGNSNISGSAHLGGAAVAALAWARIRRRG 288
N+ AHLGG A+A L +A +G
Sbjct: 188 TSSNAG-GHIAHLGG-ALAGLWFAASLNKG 215
>gi|298480086|ref|ZP_06998285.1| rhomboid family protein [Bacteroides sp. D22]
gi|298273895|gb|EFI15457.1| rhomboid family protein [Bacteroides sp. D22]
Length = 301
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 30/150 (20%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV-YHAF 225
+L T F H + HI+ NM+ LY+FG ++L LY+ G I G + Y++ Y+ F
Sbjct: 68 SLFTYMFMHAGILHILFNMLWLYWFGSLFLYFFSAKHLRGLYVLGGICGGLLYMIAYNVF 127
Query: 226 LAMSSKRQGMWVVDPS---------------------------RTPALGVFLIGKDMLRI 258
SS+ G +V S R L + +IG D+L I
Sbjct: 128 PLFSSQVVGSTLVGASASVLAIVAATAYREPNYRVQLFLFGAIRLKYLALVVIGIDVLSI 187
Query: 259 IEGNSNISGSAHLGGAAVAALAWARIRRRG 288
N+ AHLGG A+A L +A +G
Sbjct: 188 TSSNAG-GHIAHLGG-ALAGLWFAASLNKG 215
>gi|241952839|ref|XP_002419141.1| serine protease, putative [Candida dubliniensis CD36]
gi|223642481|emb|CAX42730.1| serine protease, putative [Candida dubliniensis CD36]
Length = 327
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
+++ LI N AVF++WRI ++ + I + L TL+ SAFSH H N
Sbjct: 127 SLLWSLIGINGAVFLMWRIPRLQWFTMKYGILFKDNLQSP-WTLLGSAFSHQSFAHFFIN 185
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMS 229
M+ L FG ++ LG +Y+ A+ S L FL S
Sbjct: 186 MLALQSFGSTLVAFLGVSNFTIMYLNSAVISSFASLAIPMFLGSS 230
>gi|409356388|ref|ZP_11234775.1| putative membrane-bound rhomboid protease [Dietzia alimentaria 72]
Length = 244
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 130 LIIANTAVFMLWRIADPKFMAN------NFTISLDNFLSGRLH--TLITSAFSHIDVEHI 181
LI AN AV++ + F+ N FT ++ R L+TSAF H H+
Sbjct: 24 LIAANLAVYVATVVQARSFLDNRASALFEFTALYPPLVAFRDEWWRLLTSAFQHFGPMHL 83
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
+ NM L+ G+ I R++G L +Y+ A+GGSV
Sbjct: 84 LLNMYMLWLLGIGIERSVGHARYLAMYLVSALGGSV 119
>gi|452202996|ref|YP_007483129.1| rhomboid family protein [Dehalococcoides mccartyi DCMB5]
gi|452110055|gb|AGG05787.1| rhomboid family protein [Dehalococcoides mccartyi DCMB5]
Length = 190
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 37/58 (63%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA 224
T++TS F H D+ H+ +NM+ LYFFG ++ + + L ++ G + GS+ +++ +A
Sbjct: 50 TIVTSLFVHADLWHLFANMLTLYFFGNALLQMISQRSWLIIFFGGGLAGSLLFILLNA 107
>gi|374609055|ref|ZP_09681852.1| Rhomboid family protein [Mycobacterium tusciae JS617]
gi|373552795|gb|EHP79398.1| Rhomboid family protein [Mycobacterium tusciae JS617]
Length = 282
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
G + L+TSAF H V HI+ NM LY G + LG + LY A+GGSV +
Sbjct: 105 DGEWYRLLTSAFLHYGVTHILFNMWALYVVGPPLEAALGRLRFIGLYFTSALGGSVLVYL 164
Query: 222 YHAFLAMSSKRQG 234
+ A ++ G
Sbjct: 165 LSSLGAQTAGASG 177
>gi|149377602|ref|ZP_01895341.1| uncharacterized membrane protein [Marinobacter algicola DG893]
gi|149358144|gb|EDM46627.1| uncharacterized membrane protein [Marinobacter algicola DG893]
Length = 482
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 165 LHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIGGSVF 218
L+TLIT F H HI+ N++ L+ G ++ + LGP +LL + GA+ G VF
Sbjct: 155 LYTLITYQFLHGGWGHIIGNLVFLFLLGFTVEKALGPGRFLLAYLLCGALSGVVF 209
>gi|374594323|ref|ZP_09667328.1| Rhomboid family protein [Gillisia limnaea DSM 15749]
gi|373872398|gb|EHQ04395.1| Rhomboid family protein [Gillisia limnaea DSM 15749]
Length = 299
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 61/135 (45%), Gaps = 28/135 (20%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAI-GGSVFYLVYHAF 225
++IT +F H + HI+SNM+ LY+ G + LL Y G I GG V+ L Y+ F
Sbjct: 67 SIITYSFMHSGIWHILSNMLILYYAGNYFLSYFPSKKLLTFYFLGVIVGGMVYMLSYNLF 126
Query: 226 -----------LAMSSKRQGMWVVDPSRTPALGV---------------FLIGKDMLRII 259
L S+ + V +R P +G+ FL+ D+++I
Sbjct: 127 PAFQGTGRSYLLGASAGVMAVLVGIATRIPNMGIRLLILGNIKFWYIAAFLVVLDVVQIP 186
Query: 260 EGNSNISGSAHLGGA 274
GN+ AHLGGA
Sbjct: 187 FGNAG-GHLAHLGGA 200
>gi|73748084|ref|YP_307323.1| rhomboid family protein [Dehalococcoides sp. CBDB1]
gi|147668888|ref|YP_001213706.1| rhomboid family protein [Dehalococcoides sp. BAV1]
gi|452204414|ref|YP_007484543.1| rhomboid family protein [Dehalococcoides mccartyi BTF08]
gi|73659800|emb|CAI82407.1| rhomboid family protein [Dehalococcoides sp. CBDB1]
gi|146269836|gb|ABQ16828.1| Rhomboid family protein [Dehalococcoides sp. BAV1]
gi|452111470|gb|AGG07201.1| rhomboid family protein [Dehalococcoides mccartyi BTF08]
Length = 190
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 37/58 (63%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA 224
T++TS F H D+ H+ +NM+ LYFFG ++ + + L ++ G + GS+ +++ +A
Sbjct: 50 TIVTSLFVHADLWHLFANMLTLYFFGNALLQMISQRSWLIIFFGGGLAGSLLFILLNA 107
>gi|83745575|ref|ZP_00942633.1| transmembrane hypothetical [Ralstonia solanacearum UW551]
gi|83727652|gb|EAP74772.1| transmembrane hypothetical [Ralstonia solanacearum UW551]
Length = 569
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA 224
L+++ F H V H+ NM+GLY G+++ R GP L +Y+ + GS L + A
Sbjct: 256 LLSATFLHAGVLHLAINMVGLYATGIAVERIYGPAAYLLIYLGAGLLGSALSLSFAA 312
>gi|21222264|ref|NP_628043.1| hypothetical protein SCO3855 [Streptomyces coelicolor A3(2)]
gi|289770532|ref|ZP_06529910.1| conserved hypothetical protein [Streptomyces lividans TK24]
gi|5102807|emb|CAB45222.1| putative membrane protein [Streptomyces coelicolor A3(2)]
gi|289700731|gb|EFD68160.1| conserved hypothetical protein [Streptomyces lividans TK24]
Length = 297
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTIS---------LDNFLSGRLHTLITSAFSHIDVEH 180
LI N AVF+ + F+++ I + G + L+T+ F+H ++ H
Sbjct: 90 LIGINVAVFIAVQALPSSFLSDMVLIGRWPPAPFVPTEGVAEGEWYRLVTTMFTHEEIWH 149
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
I NMI L+F G + LG L LY+ + GSV
Sbjct: 150 IGFNMISLWFLGGPLEAALGRARYLALYLVSGLAGSVL 187
>gi|357606391|gb|EHJ65050.1| hypothetical protein KGM_14236 [Danaus plexippus]
Length = 347
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 5/111 (4%)
Query: 113 RWRSWLRQYGSSEVVYGLIIANTAVFMLWRIAD-PKFMANNFTISLDNFLSGRLHTLITS 171
+W L++ S +V Y ++ AN VF WR+ FM F + + + + ++ S
Sbjct: 132 KWWKSLKE--SEKVFYPILAANVLVFGAWRVRSFQPFMIKYFCSNPSSVV--KCLPMVLS 187
Query: 172 AFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
FSH H+ +NM LY F + +LG E + +Y++ + S +Y
Sbjct: 188 TFSHYSALHLAANMYVLYSFMPAAIASLGKEQFVAMYLSAGVISSFASFIY 238
>gi|358449751|ref|ZP_09160232.1| rhomboid family protein [Marinobacter manganoxydans MnI7-9]
gi|357226120|gb|EHJ04604.1| rhomboid family protein [Marinobacter manganoxydans MnI7-9]
Length = 484
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 29/146 (19%)
Query: 165 LHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIGGSVFYLV-- 221
L+TLIT F H HI+ N+I L+ G ++ + LGP YL+ + GA+ G +F V
Sbjct: 155 LYTLITYQFLHGGWGHIIGNLIFLFLLGFTVEKALGPGRYLIAYLVCGALSGLMFTAVSA 214
Query: 222 --YHAFLAMS---SKRQGMWVV-----------------DPSRTPALGVF--LIGKDMLR 257
Y + S S GM+V + R PA+ + +GK++
Sbjct: 215 GSYVPLVGASGSISGLMGMYVAIYGLQKIRFFYFLGVYFNYFRAPAIALLPVWVGKEIYD 274
Query: 258 I-IEGNSNISGSAHLGG-AAVAALAW 281
G + I+ AH GG A A L W
Sbjct: 275 YWYAGATGIAYMAHAGGLIAGAGLVW 300
>gi|409124088|ref|ZP_11223483.1| transmembrane rhomboid family protein [Gillisia sp. CBA3202]
Length = 299
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 89/203 (43%), Gaps = 47/203 (23%)
Query: 110 FRYRWRSWLRQYGSSEVVYGLIIANTAVFMLW-RIADPKFMAN----------NFTISLD 158
FRY+ ++ + VV LI N VF+L+ I F+ N F L
Sbjct: 7 FRYKLQT-------ATVVEKLIAINVVVFILFFLIKTIAFLFNLPSDFITEWLVFPKELG 59
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
F+ + ++IT +F H + HI+SNM+ LY+ G+ P+ LL Y G + G++
Sbjct: 60 EFVF-KPWSIITYSFLHSGIWHILSNMLILYYAGIYFLNYFSPKKLLTFYFLGVVIGALV 118
Query: 219 YLV-YHAF-----------LAMSSKRQGMWVVDPSRTPALGV---------------FLI 251
Y++ Y+ F + S+ + V ++ P + + FL+
Sbjct: 119 YMLSYNLFPAFEATGKSYLVGASAGVMSVLVGVATKVPNMKIRLMFLGSIKFWYIAAFLV 178
Query: 252 GKDMLRIIEGNSNISGSAHLGGA 274
D+++I GN+ AHLGGA
Sbjct: 179 VIDIIQIPFGNAG-GHFAHLGGA 200
>gi|295133316|ref|YP_003583992.1| transmembrane rhomboid family protein [Zunongwangia profunda
SM-A87]
gi|294981331|gb|ADF51796.1| transmembrane rhomboid family protein [Zunongwangia profunda
SM-A87]
Length = 304
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 65/146 (44%), Gaps = 27/146 (18%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGA-IGGSVFYLVYHAF 225
T+I+ +F H + H+ SNM+ LYF G+ P+ LL Y G IGG VF L Y+ F
Sbjct: 68 TIISYSFLHGGIWHLASNMLILYFSGIYFLNFFSPKRLLNYYFLGVIIGGLVFMLSYNLF 127
Query: 226 LAMSSKRQ--------GMWVVDPSRTPALGVF-----------------LIGKDMLRIIE 260
A S + M V+ T A ++ L+ D+++I
Sbjct: 128 PAFSGGKSYLVGASAGVMAVLIGVATQAPNMYVRLLIIGNVKFWWIAATLVAIDIIQIPM 187
Query: 261 GNSNISGSAHLGGAAVAALAWARIRR 286
GN+ AHLGGA + L ++ +
Sbjct: 188 GNAG-GHLAHLGGAGLGYLYTTQLHK 212
>gi|207738893|ref|YP_002257286.1| membrane protein [Ralstonia solanacearum IPO1609]
gi|206592264|emb|CAQ59170.1| membrane protein [Ralstonia solanacearum IPO1609]
Length = 543
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA 224
L+++ F H V H+ NM+GLY G+++ R GP L +Y+ + GS L + A
Sbjct: 230 LLSATFLHAGVLHLAINMVGLYATGIAVERIYGPAAYLLIYLGAGLLGSALSLSFAA 286
>gi|421896459|ref|ZP_16326856.1| membrane protein [Ralstonia solanacearum MolK2]
gi|206587624|emb|CAQ18206.1| membrane protein [Ralstonia solanacearum MolK2]
Length = 458
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA 224
L+++ F H V H+ NM+GLY G+++ R GP L +Y+ + GS L + A
Sbjct: 145 LLSATFLHAGVLHLAINMVGLYATGITVERIYGPAAYLLIYLGAGLLGSALSLSFAA 201
>gi|70953902|ref|XP_746024.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56526521|emb|CAH77240.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 229
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/221 (20%), Positives = 77/221 (34%), Gaps = 49/221 (22%)
Query: 118 LRQYGSSEVVYGLIIANTAVFMLWRIADPK-----------------------FMANNFT 154
+ Y S V Y LI + V+ LW A P+ FM +F
Sbjct: 7 IHHYNKSPVTYSLIFLHFFVYFLWMNAKPRQMSYNYFSPTPIRSHSAPLLTSEFMYKHFC 66
Query: 155 ISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIG 214
SL + +L+TL+T+ SH ++ + N I L++ G S+ + + Y+ I
Sbjct: 67 CSLKSLREKQLYTLVTNIISHNTIQSFLLNTISLFYIGRSLEALINSKNFFLTYIVSGII 126
Query: 215 GSVFYLVYHA----------FLAMSSKRQGMWVVDPSRTPALGVFLIG------------ 252
S ++Y L S + P ++L G
Sbjct: 127 SSYIQILYQKNSNYGYNNVYVLGASGSISSILATYTFIHPNHKIYLYGVLGLPLAVFSSF 186
Query: 253 ---KDMLRIIEG-NSNISGSAHLGGAAVAALAWARIRRRGF 289
++ II N +I ++HL G + L + R F
Sbjct: 187 YFLNELYSIISNKNDDIGHASHLTGMVLGILYYYSYVNRKF 227
>gi|402304909|ref|ZP_10823972.1| peptidase, S54 family [Prevotella sp. MSX73]
gi|400380695|gb|EJP33508.1| peptidase, S54 family [Prevotella sp. MSX73]
Length = 339
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 130 LIIANTAVF---MLW-RIADPKFMANNFTISLDNFLSGRLHT--LITSAFSHIDVEHIVS 183
L+I N A F ML+ + A +++ N+ T+ L FL+ H L T F H EHI+
Sbjct: 36 LLIINIAAFVATMLYGKDAYGEYLLND-TLGLHFFLAPDFHIYQLFTYMFMHGGFEHILF 94
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
NM L+ FG + GP+ L Y++ +G +F
Sbjct: 95 NMFALWMFGCVVENVWGPKKFLFYYISCGVGAGLF 129
>gi|154314714|ref|XP_001556681.1| hypothetical protein BC1G_04066 [Botryotinia fuckeliana B05.10]
Length = 473
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 127 VYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMI 186
V LI+ANT V LWR+ M N + + + + R ++I FSH H + NM+
Sbjct: 266 VSALILANTMVLFLWRVPPCWTMLNKYFMIIPAY--PRALSMIGGVFSHQAFTHFLPNMV 323
Query: 187 GLYFFGMSIGRTLGPEYLLKLY 208
L FG+ + +G L LY
Sbjct: 324 FLAIFGVDLHDEVGRANFLSLY 345
>gi|417938970|ref|ZP_12582263.1| peptidase, S54 family [Streptococcus infantis SK970]
gi|343390415|gb|EGV02995.1| peptidase, S54 family [Streptococcus infantis SK970]
Length = 224
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 17/136 (12%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY--HAF 225
L ++ F HI +EH + NM+ LYF G + + G + +Y+ + G++F LV+ +A
Sbjct: 61 LFSATFVHIGLEHFLVNMLSLYFLGRQMEQIFGSKQFFFIYLLSGMMGNLFVLVFSPNAI 120
Query: 226 LA-MSSKRQGMW---VV--DPSRTPALGVFLIGKDMLRIIEGN-------SNISGSAHLG 272
A S+ GM+ VV SR P L +G+ L ++ N IS + HLG
Sbjct: 121 TAGASTALYGMFASIVVLRYASRNPYLQQ--LGQSYLSLLVINLVGSVLIPGISLAGHLG 178
Query: 273 GAAVAALAWARIRRRG 288
GA AL RG
Sbjct: 179 GAVGGALLAIVFPVRG 194
>gi|333382814|ref|ZP_08474480.1| hypothetical protein HMPREF9455_02646 [Dysgonomonas gadei ATCC
BAA-286]
gi|332828415|gb|EGK01124.1| hypothetical protein HMPREF9455_02646 [Dysgonomonas gadei ATCC
BAA-286]
Length = 218
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 21/133 (15%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH---- 223
L+TSA H D H++ NM+ LYFF I ++LG L +Y IGG + L H
Sbjct: 51 LLTSATLHGDYMHLIFNMMTLYFFSSVIIQSLGIWQYLTIYFLSIIGGGLLSLWVHRKEY 110
Query: 224 --------------AFLAMS---SKRQGMWVVDPSRTPALGVFLIGKDMLRIIEGNSNIS 266
F A++ G+ + P + G+ +G + + NI
Sbjct: 111 YYSAIGASGGVVGILFAAIALYPDMTLGVMFILPMKGWLFGILYLGYSIYGMHTRQGNIG 170
Query: 267 GSAHLGGAAVAAL 279
AHLGGAA+ +
Sbjct: 171 HDAHLGGAAIGLI 183
>gi|385333181|ref|YP_005887132.1| integral membrane protein [Marinobacter adhaerens HP15]
gi|311696331|gb|ADP99204.1| integral membrane protein [Marinobacter adhaerens HP15]
Length = 482
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 29/146 (19%)
Query: 165 LHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIGGSVFYLV-- 221
L+TLIT F H HI+ N+I L+ G ++ + LGP YL+ + GA+ G +F V
Sbjct: 155 LYTLITYQFLHGGWGHIIGNLIFLFLLGFTVEKALGPGRYLIAYLVCGALSGLMFTAVSA 214
Query: 222 --YHAFLAMS---SKRQGMWVV-----------------DPSRTPALGVF--LIGKDMLR 257
Y + S S GM+V + R PA+ + +GK++
Sbjct: 215 GSYVPLVGASGSISGLMGMYVAIYGLQKIRFFYFLGVYFNYFRAPAIALLPVWVGKEIYD 274
Query: 258 I-IEGNSNISGSAHLGG-AAVAALAW 281
G + I+ AH GG A A L W
Sbjct: 275 YWYAGATGIAYMAHAGGLIAGAGLVW 300
>gi|120600057|ref|YP_964631.1| rhomboid family protein [Shewanella sp. W3-18-1]
gi|120560150|gb|ABM26077.1| Rhomboid family protein [Shewanella sp. W3-18-1]
Length = 523
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
N L+G L+TS+F H + H+V N+ GL+F G I LG LL +Y+ I SV
Sbjct: 366 NVLAGEWWRLVTSSFIHGGLAHLVLNLYGLFFVGTFIEPLLGKWRLLLVYLVSGILASVA 425
Query: 219 YLVYH 223
L ++
Sbjct: 426 SLCWY 430
>gi|315607054|ref|ZP_07882058.1| rhomboid family protein [Prevotella buccae ATCC 33574]
gi|315251108|gb|EFU31093.1| rhomboid family protein [Prevotella buccae ATCC 33574]
Length = 339
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 130 LIIANTAVF---MLW-RIADPKFMANNFTISLDNFLSGRLHT--LITSAFSHIDVEHIVS 183
L+I N A F ML+ + A +++ N+ T+ L FL+ H L T F H EHI+
Sbjct: 36 LLIINIAAFVATMLYGKDAYGEYLLND-TLGLHFFLAPDFHIYQLFTYMFMHGGFEHILF 94
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
NM L+ FG + GP+ L Y++ +G +F
Sbjct: 95 NMFALWMFGCVVENVWGPKKFLFYYISCGVGAGLF 129
>gi|156087563|ref|XP_001611188.1| rhomboid family protein [Babesia bovis]
gi|154798442|gb|EDO07620.1| rhomboid family protein [Babesia bovis]
Length = 496
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 152 NFTIS-LDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYM- 209
NF +S D F+ G+ + L TS F H V H++ N+ L+ G LGP +L +Y+
Sbjct: 250 NFDLSPFDVFMKGQYYRLFTSLFLHNGVVHLLQNIRSLWAIGYEAADLLGPRRMLTIYLV 309
Query: 210 AGAIGGSVFYLVYHAF 225
+G + + Y+ Y A+
Sbjct: 310 SGLVANYISYVYYFAY 325
>gi|384422473|ref|YP_005631832.1| rhomboid family protein [Treponema pallidum subsp. pallidum str.
Chicago]
gi|291060339|gb|ADD73074.1| rhomboid family protein [Treponema pallidum subsp. pallidum str.
Chicago]
Length = 194
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 29/182 (15%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH-TLITSAFSHIDVEHIVSNMIGL 188
L++AN AVF++ + + + L + R++ + T F H V H++ NM+GL
Sbjct: 5 LVLANGAVFVITSLVESLGIYLALVPGLVRY--HRMYWQIFTYQFVHSGVWHLLFNMLGL 62
Query: 189 YFFGMSIGRTLGPEYLLKLYM-------AGAIG----------------GSVFYLVYHAF 225
FFG +I + +G +L Y+ AGA GS+F +++
Sbjct: 63 VFFGQTIEKKMGSSEMLLFYLLVGTLCGAGACAAYLCVGRLNVLLLGASGSIFAILFLFS 122
Query: 226 LAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIR 285
+ + +W V P P L V I ++ + N+S HL G AW IR
Sbjct: 123 VMFPTALIYLWGVIPIPAPLLIVGYILFEIFDLFFSRDNVSHLTHLLG---VLFAWGYIR 179
Query: 286 RR 287
R
Sbjct: 180 IR 181
>gi|182437510|ref|YP_001825229.1| hypothetical protein SGR_3717 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178466026|dbj|BAG20546.1| putative membrane protein [Streptomyces griseus subsp. griseus NBRC
13350]
Length = 285
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 156 SLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGG 215
S++ G+ + L+TS F H +V HI NM+GL++ G + LG L LY+ + G
Sbjct: 113 SIEGVAEGQWYRLVTSMFLHQEVVHIAFNMLGLWWLGGQLEAALGRSRYLALYLLSGLAG 172
Query: 216 SVF-YLV 221
S YL+
Sbjct: 173 SALTYLI 179
>gi|221069925|ref|ZP_03546030.1| Rhomboid family protein [Comamonas testosteroni KF-1]
gi|220714948|gb|EED70316.1| Rhomboid family protein [Comamonas testosteroni KF-1]
Length = 500
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%)
Query: 151 NNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMA 210
++IS N + TS F H H++ NM+ L+ FG ++ LG L Y+
Sbjct: 145 ERWSISYANGAGWQPLQAFTSIFLHGSTSHLLGNMVFLFLFGFTLELALGAFTYLAFYVI 204
Query: 211 GAIGGSVFYLVYHA 224
G IG S+F L+++A
Sbjct: 205 GGIGASLFALMFYA 218
>gi|281203870|gb|EFA78066.1| hypothetical protein PPL_08712 [Polysphondylium pallidum PN500]
Length = 429
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
Query: 108 ASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFM---ANNFTISLDNFLSGR 164
SF R S + + + +I N A+F+L + +P F +N+F S+ N +S
Sbjct: 151 GSFIERILSRFKITEGTLTIASIIALNGAIFLLLK--NPAFFNRYSNHFFCSVHN-ISSH 207
Query: 165 LHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
L+ S F+HI+ H + NM+GL+ FG +G L LY+ G + G++
Sbjct: 208 PMCLLLSNFTHIEGFHFLFNMVGLWSFGQVAYEYMGMLPFLALYVGGGLMGTL 260
>gi|146422679|ref|XP_001487275.1| hypothetical protein PGUG_00652 [Meyerozyma guilliermondii ATCC
6260]
Length = 327
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
++Y +I N AVF++W++ + + + + +S ++ SAFSH HI+ N
Sbjct: 130 ALIYTIIALNGAVFLMWKLPQMVRYLTRYGLLVKDNVSN--WAMVGSAFSHQSFSHILIN 187
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
M L FG ++ +G E LY+ A+ S F
Sbjct: 188 MFVLQSFGSTLVSMIGVENFTSLYLNSAVISSFF 221
>gi|386312683|ref|YP_006008848.1| rhomboid family protein [Shewanella putrefaciens 200]
gi|319425308|gb|ADV53382.1| Rhomboid family protein [Shewanella putrefaciens 200]
Length = 523
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
N L+G L+TS+F H + H+V N+ GL+F G I LG LL +Y+ I SV
Sbjct: 366 NVLAGEWWRLVTSSFIHGGLAHLVLNLYGLFFVGTFIEPLLGKWRLLLVYLVSGILASVA 425
Query: 219 YLVYH 223
L ++
Sbjct: 426 SLCWY 430
>gi|408673735|ref|YP_006873483.1| Rhomboid family protein [Emticicia oligotrophica DSM 17448]
gi|387855359|gb|AFK03456.1| Rhomboid family protein [Emticicia oligotrophica DSM 17448]
Length = 307
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 38/65 (58%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T++T F+H H++ NM+ ++FG + +G LL +Y+ G I +FY+ + +
Sbjct: 71 TIVTYCFTHYGFLHLLFNMLTFFWFGTLVQEFIGSRKLLNIYLIGGILSGLFYITIYNLI 130
Query: 227 AMSSK 231
A++++
Sbjct: 131 ALANQ 135
>gi|417897083|ref|ZP_12541026.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21235]
gi|341840349|gb|EGS81869.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21235]
Length = 372
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
N + G + ++TS F H EHI+ NM+ L+ FG + +G +L +Y + G+
Sbjct: 196 NVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFV 255
Query: 219 YLVYHA-----------FLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG----NS 263
L ++ F + S M+V LG LI L I+ G S
Sbjct: 256 SLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIA---LVILVGVSLFMS 312
Query: 264 NISGSAHLGG 273
NI+ AH+GG
Sbjct: 313 NINIVAHIGG 322
>gi|291515609|emb|CBK64819.1| Uncharacterized membrane protein (homolog of Drosophila rhomboid)
[Alistipes shahii WAL 8301]
Length = 200
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 80/197 (40%), Gaps = 30/197 (15%)
Query: 119 RQYGSSEVVYGLIIANTAVFM---LWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSH 175
R + + VV LII N V+M L + D ++ F + IT F H
Sbjct: 3 RYFQTPPVVKNLIIINVLVYMATALLPVGDTIMQYCALSLGTPYF---HTYQFITYMFLH 59
Query: 176 IDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF-YLVYHAF-------LA 227
+ EHI NM L+ FG ++ LG + L YM +G ++ YL AF +
Sbjct: 60 ANFEHIFFNMFALWMFGRTLEYELGSQRFLTFYMVCGVGAALIQYLTALAFGELPLLLVG 119
Query: 228 MSSKRQGMW----VVDPSRTPALGV---------FLIGKDMLRII---EGNSNISGSAHL 271
S G+ V+ P+ L + F+I ++ + +G N++ AH+
Sbjct: 120 ASGAVMGLLLAFGVMHPNAVIMLLIPPIPMKAKWFVIIYAVIELFLGWKGVGNVAHFAHV 179
Query: 272 GGAAVAALAWARIRRRG 288
GG L +RRG
Sbjct: 180 GGMLWGFLLLHWWKRRG 196
>gi|402494366|ref|ZP_10841108.1| transmembrane rhomboid family protein [Aquimarina agarilytica ZC1]
Length = 305
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 10/117 (8%)
Query: 115 RSWLRQYGSSEVVYGLIIANTAVFMLWRIA---------DPKFMANNFTISLDNF-LSGR 164
++ + + + V++ LII N VF+ + + D +F+ N F D F +
Sbjct: 5 EAYTKHFLLASVLHKLIIVNVLVFVFFPLVNTLGFLFKTDLEFIKNWFAFPHDIFSYVYK 64
Query: 165 LHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
TLIT F H H++ NM+ LYFFG L +Y G I G++ Y++
Sbjct: 65 PWTLITYGFLHSGFRHLLFNMLYLYFFGQIFLNIHNGRRFLNVYFLGIIVGALVYML 121
>gi|392397020|ref|YP_006433621.1| hypothetical protein Fleli_1397 [Flexibacter litoralis DSM 6794]
gi|390528098|gb|AFM03828.1| putative membrane protein [Flexibacter litoralis DSM 6794]
Length = 270
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 14/104 (13%)
Query: 124 SEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRL--------HTLITSAFSH 175
+ VV L+I N A+F L +++ N+ I L + R + LIT F H
Sbjct: 5 TPVVKVLLILNIAIFAL------QYVLQNYGIDLSEMFALRYFGAETFAPYQLITHMFLH 58
Query: 176 IDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFY 219
+ HI+ NM LY FG + + L LYM +G +V +
Sbjct: 59 AGLFHILGNMYALYIFGPPLEEYFDSKKFLILYMVAGLGAAVLH 102
>gi|418309099|ref|ZP_12920674.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21194]
gi|365235250|gb|EHM76170.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21194]
Length = 364
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
N + G + ++TS F H EHI+ NM+ L+ FG + +G +L +Y + G+
Sbjct: 196 NVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFV 255
Query: 219 YLVYHA-----------FLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG----NS 263
L ++ F + S M+V LG LI L I+ G S
Sbjct: 256 SLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIA---LVILVGVSLFMS 312
Query: 264 NISGSAHLGG 273
NI+ AH+GG
Sbjct: 313 NINIVAHIGG 322
>gi|340621609|ref|YP_004740061.1| hypothetical protein Ccan_08360 [Capnocytophaga canimorsus Cc5]
gi|339901875|gb|AEK22954.1| P-beta [Capnocytophaga canimorsus Cc5]
Length = 285
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 60/147 (40%), Gaps = 30/147 (20%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAI-GGSVFYLVYH-- 223
T+IT AF H H+ NM L+F G + L Y G I GG F LVY
Sbjct: 61 TIITYAFHHASFSHLFWNMFLLFFVGQIFLNLFHKKQFLSTYFLGVIFGGITFLLVYRFF 120
Query: 224 --------------------AFLAMSSKRQGMWVVDPSRTPA--LGVFLIGKDMLRIIEG 261
FL + G+ ++ R +GVF+I D+L+I
Sbjct: 121 FNDLENTVLVGASGGIMCLLIFLCTTVPNYGVNLLFNLRVKLWHIGVFMIVFDVLQI--- 177
Query: 262 NSNISGS-AHLGGAAVAALAWARIRRR 287
+SN SG H GG A+A L W R+
Sbjct: 178 SSNTSGRIVHFGG-ALAGLLWGLYTRQ 203
>gi|383320817|ref|YP_005381658.1| hypothetical protein Mtc_2409 [Methanocella conradii HZ254]
gi|379322187|gb|AFD01140.1| putative membrane protein [Methanocella conradii HZ254]
Length = 261
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 80/180 (44%), Gaps = 22/180 (12%)
Query: 128 YGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIG 187
Y +I VF+L + DP ++ F +S+ + LS R L+TS F H + H+ NM+
Sbjct: 76 YIIIGITVLVFILQLLLDP-WLTGLFDLSMGSLLS-RPWGLVTSMFLHAGLAHLFFNMLA 133
Query: 188 LYFFGMSIGRTLGPEYLLKLYM-AGAIGG--SVFYLVYHAFLAMSSKRQGMWVVDPSRTP 244
L+FFG + R + + L LY +G + G VF A + S G+ P
Sbjct: 134 LFFFGPLLERRIESKGFLALYFGSGILAGLVQVFIFPTSAVIGASGAIFGVLGALTVLMP 193
Query: 245 ALGVFL--------------IGKDMLRIIEGNSN-ISGSAHLGG--AAVAALAWARIRRR 287
L V L D+ ++ G + I+ +AHL G A +AA W R R R
Sbjct: 194 DLTVILYFVPLKMVYVTILFAILDLYPMLTGTPDGIAHAAHLTGLAAGLAAGFWYRERYR 253
>gi|326778165|ref|ZP_08237430.1| Peptidase S54, rhomboid domain protein [Streptomyces griseus
XylebKG-1]
gi|326658498|gb|EGE43344.1| Peptidase S54, rhomboid domain protein [Streptomyces griseus
XylebKG-1]
Length = 300
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 156 SLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGG 215
S++ G+ + L+TS F H +V HI NM+GL++ G + LG L LY+ + G
Sbjct: 128 SIEGVAEGQWYRLVTSMFLHQEVVHIAFNMLGLWWLGGQLEAALGRSRYLALYLLSGLAG 187
Query: 216 SVF-YLV 221
S YL+
Sbjct: 188 SALTYLI 194
>gi|357019099|ref|ZP_09081357.1| rhomboid family protein [Mycobacterium thermoresistibile ATCC
19527]
gi|356481160|gb|EHI14270.1| rhomboid family protein [Mycobacterium thermoresistibile ATCC
19527]
Length = 281
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 122 GSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHI 181
G + Y LI N +++L R A F F + +G + L+TSAF H + H+
Sbjct: 72 GPPVLTYTLIAVNVLMYVLQR-ASTGF-TEAFVLWAPAVAAGEYYRLVTSAFLHFGLMHL 129
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMS 229
+ NM LY G + LG LY A+GGSV LVY LAM+
Sbjct: 130 LFNMFALYVIGGPLEAALGRLRFGLLYALSALGGSV--LVY--LLAMN 173
>gi|332638068|ref|ZP_08416931.1| membrane-associated serine protease [Weissella cibaria KACC 11862]
Length = 233
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 79/189 (41%), Gaps = 46/189 (24%)
Query: 119 RQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTI-SLDNFLSG--------RLHT-- 167
R + ++ GL+ V+ LW + A++FTI S F SG +LH
Sbjct: 7 RAFKATPATAGLVTVMVLVY-LWEVLQ----AHSFTINSQVLFHSGAQFSPAVYQLHQWW 61
Query: 168 -LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH--- 223
LIT+ F H+ H+ NMI LYF G + LGP L L+ I G++ L +
Sbjct: 62 RLITAGFLHVTFSHLAFNMITLYFIGRLLEIELGPWRFLALFFLTVISGNLMSLAFGGVN 121
Query: 224 -----------------AFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIE--GNSN 264
L + KR+ W S+ +G+F+ +L I+ +
Sbjct: 122 VISAGASGGIFGLFGAIGMLGLLDKRRAYW---RSQAKLMGIFI----LLSIVSSFATPD 174
Query: 265 ISGSAHLGG 273
I SAH+GG
Sbjct: 175 IDLSAHIGG 183
>gi|429749212|ref|ZP_19282347.1| peptidase, S54 family [Capnocytophaga sp. oral taxon 332 str.
F0381]
gi|429168857|gb|EKY10667.1| peptidase, S54 family [Capnocytophaga sp. oral taxon 332 str.
F0381]
Length = 212
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 58/133 (43%), Gaps = 21/133 (15%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF--YLV---- 221
L++S F H D +H++ NM+ L+FF + R++G L +Y I GS+F YL
Sbjct: 44 LVSSGFLHADWQHLILNMVSLFFFQGLLIRSIGSVLFLVVYFGAMIAGSLFSWYLYQRQW 103
Query: 222 YHAFLAMSSKRQGMWVVDPSRTPA-----------LGVFLIGKD---MLRIIEGNSNISG 267
Y++ + S G+ + P G F M EG+ NI
Sbjct: 104 YYSAIGASGAVSGIIFAAIALNPTGITVNFLPGWLFGAFYFAYSAFMMFNPSEGD-NIGH 162
Query: 268 SAHLGGAAVAALA 280
+AHLGGA L
Sbjct: 163 AAHLGGAVFGLLV 175
>gi|407985614|ref|ZP_11166204.1| rhomboid family protein [Mycobacterium hassiacum DSM 44199]
gi|407372772|gb|EKF21798.1| rhomboid family protein [Mycobacterium hassiacum DSM 44199]
Length = 221
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
G+ + L+TS F H H++ NM LY G + LG LY+AGA+GGSV LV
Sbjct: 100 DGQWYRLLTSTFLHFGPVHLLFNMWALYVVGPPLESALGRLRFTALYLAGALGGSV--LV 157
Query: 222 Y 222
Y
Sbjct: 158 Y 158
>gi|288926929|ref|ZP_06420827.1| rhomboid family protein [Prevotella buccae D17]
gi|288336288|gb|EFC74671.1| rhomboid family protein [Prevotella buccae D17]
Length = 314
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 7/99 (7%)
Query: 126 VVYGLIIANTAVF---MLW-RIADPKFMANNFTISLDNFLSGRLHT--LITSAFSHIDVE 179
+ L+I N A F ML+ + A +++ N+ T+ L FL+ H L T F H E
Sbjct: 7 ITKNLLIINIAAFVATMLYGKDAYGEYLLND-TLGLHFFLAPDFHIYQLFTYMFMHGGFE 65
Query: 180 HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
HI+ NM L+ FG + GP+ L Y++ +G +F
Sbjct: 66 HILFNMFALWMFGCVVENVWGPKKFLFYYISCGVGAGLF 104
>gi|145596990|ref|YP_001161287.1| rhomboid family protein [Salinispora tropica CNB-440]
gi|145306327|gb|ABP56909.1| Rhomboid family protein [Salinispora tropica CNB-440]
Length = 303
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 21/139 (15%)
Query: 156 SLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGG 215
++ G+ + L+T+ F H V H++ NM L+ G ++ +LGP L LY+ +GG
Sbjct: 130 TVGGIADGQWYRLVTAMFLHYGVIHLLLNMYALWILGRTLEASLGPARFLALYLVAGLGG 189
Query: 216 SV-FYLVYHAFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIE-------------- 260
+V YL+ A + ++ + + +F++G+ M R +
Sbjct: 190 NVAAYLISAPNAATAGASTAIFGLFAA------LFVVGRRMGRDVSQVLPILVINLVFTL 243
Query: 261 GNSNISGSAHLGGAAVAAL 279
IS HLGG AV L
Sbjct: 244 TVPGISIPGHLGGLAVGGL 262
>gi|146292013|ref|YP_001182437.1| rhomboid family protein [Shewanella putrefaciens CN-32]
gi|145563703|gb|ABP74638.1| Rhomboid family protein [Shewanella putrefaciens CN-32]
Length = 523
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
N L+G L+TS+F H + H+V N+ GL+F G I LG LL +Y+ I SV
Sbjct: 366 NVLAGEWWRLVTSSFIHGGLAHLVLNLYGLFFVGTFIEPLLGKWRLLLVYLVSGILASVA 425
Query: 219 YLVYH 223
L ++
Sbjct: 426 SLCWY 430
>gi|441509684|ref|ZP_20991598.1| rhomboid family protein [Gordonia aichiensis NBRC 108223]
gi|441446200|dbj|GAC49559.1| rhomboid family protein [Gordonia aichiensis NBRC 108223]
Length = 230
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 67/172 (38%), Gaps = 15/172 (8%)
Query: 128 YGLIIANTAVFMLWRIADPKFMAN------NFTISLDNFLSGRLHTLITSAFSHIDVEHI 181
Y LI N +F L I F A + + + +G L+T+ F H V HI
Sbjct: 11 YALIAVNVVIFALCVIQAKSFDAGLAPLFQHGDLVRADVANGEYWRLLTAGFLHFTVAHI 70
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQG------- 234
NMI LY G + LG L +Y GGS +++ A S+ G
Sbjct: 71 ALNMISLYILGRDLEAALGLGRYLMVYFVALFGGSAAVMLFEAGNVRSAGASGAIYGLMG 130
Query: 235 --MWVVDPSRTPALGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARI 284
+ VV +R GV I L IS +AH+GG A A A I
Sbjct: 131 AVLVVVLKARVSPTGVITIIVINLVFSVTMPGISLAAHVGGLVFGAAATAAI 182
>gi|384099561|ref|ZP_10000647.1| putative transmembrane rhomboid family protein [Imtechella
halotolerans K1]
gi|383832909|gb|EID72379.1| putative transmembrane rhomboid family protein [Imtechella
halotolerans K1]
Length = 288
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 79/194 (40%), Gaps = 32/194 (16%)
Query: 109 SFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSG---RL 165
RYR+ +W + + + + L+++ + F N +L LS +
Sbjct: 6 DLRYRFTTWTAVEKIISITAVVFVLENLLLFLFQLPEDFF---NQWFALPKLLSELVVKP 62
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV-YHA 224
TL+T AF H + HI NM+ LYF G L +Y GA+ G F+L+ Y+
Sbjct: 63 WTLLTYAFFHGGLMHIFWNMLLLYFAGRMFLNLFDGRRFLNVYFLGALAGGFFFLLSYNL 122
Query: 225 F----------LAMSSKRQGMWVVDPSRTPA--------------LGVFLIGKDMLRIIE 260
F + S+ + + + TP LGVFL+ D+L++
Sbjct: 123 FPVFVGVNSVLIGASAAVMAVLIFMCTYTPYQELQFFFFRFKLWHLGVFLVLWDLLQLPM 182
Query: 261 GNSNISGSAHLGGA 274
N AHLGGA
Sbjct: 183 SNPG-GRIAHLGGA 195
>gi|225026638|ref|ZP_03715830.1| hypothetical protein EUBHAL_00889 [Eubacterium hallii DSM 3353]
gi|224956008|gb|EEG37217.1| peptidase, S54 family [Eubacterium hallii DSM 3353]
Length = 343
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 11/123 (8%)
Query: 98 FRAQFPERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFM----LWRIADPKFMANNF 153
F +F ++ R R L + L++AN VFM L D +FMA +
Sbjct: 131 FSQKFLQQKITEERTELRRMLTPVNTI-----LVLANVVVFMILSFLGNTTDAEFMAAHG 185
Query: 154 TIS-LDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAG 211
I +D + + L TS F H +H++ NM+ L G + R G YLL AG
Sbjct: 186 AIDWMDVVEKHQYYRLFTSMFLHFGADHLLQNMLILLVIGCRLERITGKLSYLLIYIGAG 245
Query: 212 AIG 214
IG
Sbjct: 246 LIG 248
>gi|88195357|ref|YP_500161.1| rhomboid family protein, partial [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|87202915|gb|ABD30725.1| rhomboid family protein [Staphylococcus aureus subsp. aureus NCTC
8325]
Length = 336
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
N + G + ++TS F H EHI+ NM+ L+ FG + +G +L +Y + G+
Sbjct: 196 NVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFV 255
Query: 219 YLVYHA-----------FLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG----NS 263
L ++ F + S M+V LG LI L I+ G S
Sbjct: 256 SLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIA---LVILVGVSLFMS 312
Query: 264 NISGSAHLGG 273
NI+ AH+GG
Sbjct: 313 NINIVAHIGG 322
>gi|403046456|ref|ZP_10901925.1| hypothetical protein SOJ_15340 [Staphylococcus sp. OJ82]
gi|402763152|gb|EJX17245.1| hypothetical protein SOJ_15340 [Staphylococcus sp. OJ82]
Length = 485
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 124 SEVVYGLIIANTAVFM-----LWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDV 178
S + Y LI N +++ L R +D K + + N + G + LI+S F H D
Sbjct: 156 SPITYTLIAVNIIIWLAMVLFLNRFSDLKMLDVGGLVHF-NVVHGEWYRLISSIFLHYDF 214
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS 216
EHI+ NM+ L+ FG + +G ++ +Y+ + G+
Sbjct: 215 EHILMNMLSLFIFGKIVESIVGHWRMIVIYIVAGLFGN 252
>gi|436837540|ref|YP_007322756.1| rhomboid family protein [Fibrella aestuarina BUZ 2]
gi|384068953|emb|CCH02163.1| rhomboid family protein [Fibrella aestuarina BUZ 2]
Length = 275
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 151 NNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYM 209
+ ++D L+ R ++ LI++ F H+D H+ NM L F ++ +GP +L LY+
Sbjct: 30 ERYAFTVDGILTHREYSRLISAGFVHVDWWHLFFNMYALLSFAGTVEWVVGPWKVLILYL 89
Query: 210 AGAIGGSVFYLVYH 223
A +GG++ L H
Sbjct: 90 ASLVGGNLLALYIH 103
>gi|221058513|ref|XP_002259902.1| serine protease [Plasmodium knowlesi strain H]
gi|193809975|emb|CAQ41169.1| serine protease, putative [Plasmodium knowlesi strain H]
Length = 569
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 30/123 (24%)
Query: 131 IIANTAVFMLWRIADP-------KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEH--- 180
+ AN VF+ WR+++ FM NF S +N HT T+A SHI + H
Sbjct: 276 LFANGVVFLCWRLSEIAGNKKFFHFMCRNFICSYENIRRKYYHTFFTAAISHITLPHFLF 335
Query: 181 ----------------IVSNMIGLYFF----GMSIGRTLGPEYLLKLYMAGAIGGSVFYL 220
I N YFF + + + + ++K+Y +I +V Y+
Sbjct: 336 NMWAFHTISNTLLSPEIKENKTNYYFFFNYKSSVLEKKMTDKDIMKIYALSSIVSTVPYI 395
Query: 221 VYH 223
+ H
Sbjct: 396 LLH 398
>gi|354545487|emb|CCE42215.1| hypothetical protein CPAR2_807640 [Candida parapsilosis]
Length = 328
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 110 FRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISL-DNFLSGRLHTL 168
+ Y S L+Q+ + +V+ +I N AVF++WR+ + + I L DN S TL
Sbjct: 114 YNYTPLSVLKQHPQA-LVWSIIAINGAVFLMWRVPQLQRFTMRYAILLKDNIQSP--WTL 170
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAI 213
+ SAFSH H NM+ F +S+ LG +Y+ A+
Sbjct: 171 LWSAFSHQSFAHFFINMLCFQSFAVSLVGILGVSNFTIMYLNAAV 215
>gi|229083526|ref|ZP_04215864.1| Rhomboid [Bacillus cereus Rock3-44]
gi|228699780|gb|EEL52427.1| Rhomboid [Bacillus cereus Rock3-44]
Length = 186
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
LITS F H+D +H +SN I L+F G SI + LG + L+ I G++
Sbjct: 50 LITSLFIHVDFQHFLSNSICLFFLGQSIEKQLGSIRFILLFFTAGISGNI 99
>gi|294674944|ref|YP_003575560.1| rhomboid family protein [Prevotella ruminicola 23]
gi|294471713|gb|ADE81102.1| rhomboid family protein [Prevotella ruminicola 23]
Length = 315
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 10/67 (14%)
Query: 148 FMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKL 207
FMAN+F L+ +T F H + HI+SNM GL+ FG I GP+ L
Sbjct: 42 FMANDF----------HLYQFVTYLFLHANFMHILSNMFGLWMFGCVIENVWGPKKFLFY 91
Query: 208 YMAGAIG 214
Y+ IG
Sbjct: 92 YITCGIG 98
>gi|288931169|ref|YP_003435229.1| rhomboid family protein [Ferroglobus placidus DSM 10642]
gi|288893417|gb|ADC64954.1| Rhomboid family protein [Ferroglobus placidus DSM 10642]
Length = 260
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 6/105 (5%)
Query: 118 LRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHID 177
L QYG + + G+I T +F L + P+ M NF N L+TS F H
Sbjct: 68 LSQYGYNNIFLGII---TLMFFL-SLVFPQIM--NFLALYPNKFYFMPWQLVTSIFLHGS 121
Query: 178 VEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
+H + N I L FFG + R LG + L+++ I G++FY+++
Sbjct: 122 FDHYLVNAIVLLFFGGELERRLGSKRYLEIFFLSGIVGNIFYILF 166
>gi|258443587|ref|ZP_05691926.1| rhomboid family protein [Staphylococcus aureus A8115]
gi|282893050|ref|ZP_06301284.1| peptidase [Staphylococcus aureus A8117]
gi|443635576|ref|ZP_21119704.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21236]
gi|257850993|gb|EEV74936.1| rhomboid family protein [Staphylococcus aureus A8115]
gi|282764368|gb|EFC04494.1| peptidase [Staphylococcus aureus A8117]
gi|443409217|gb|ELS67715.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21236]
Length = 487
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
N + G + ++TS F H EHI+ NM+ L+ FG + +G +L +Y + G+
Sbjct: 196 NVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFV 255
Query: 219 YLVYHA-----------FLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG----NS 263
L ++ F + S M+V LG LI L I+ G S
Sbjct: 256 SLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIA---LVILVGVSLFMS 312
Query: 264 NISGSAHLGG 273
NI+ AH+GG
Sbjct: 313 NINIVAHIGG 322
>gi|149370647|ref|ZP_01890336.1| rhomboid family protein [unidentified eubacterium SCB49]
gi|149356198|gb|EDM44755.1| rhomboid family protein [unidentified eubacterium SCB49]
Length = 290
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 27/148 (18%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV-YHAF 225
+ +T +F H D H++ NMI L+FF + P+ L +Y+ GAI G + Y++ Y+ F
Sbjct: 63 SFLTYSFIHFDFFHLLFNMIWLHFFSRFVLNIFTPKRFLTVYLLGAIAGGLMYVLSYNVF 122
Query: 226 -----------LAMSSKRQGMWVVDPSRTPA--------------LGVFLIGKDMLRIIE 260
L S+ + V + +P + +F+ D++R+
Sbjct: 123 PVFEDGLPSVLLGASASVTAIMVFIATHSPNTAFRLFNWTIKLWHIALFIFVYDLIRLPI 182
Query: 261 GNSNISGSAHLGGAAVAALAWARIRRRG 288
G + AH GG AV +AR +G
Sbjct: 183 GGNAGGMLAHFGG-AVFGYIYARQLLKG 209
>gi|270007066|gb|EFA03514.1| hypothetical protein TcasGA2_TC013516 [Tribolium castaneum]
Length = 337
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 73/207 (35%), Gaps = 28/207 (13%)
Query: 101 QFPERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPK-FMANNFTISLDN 159
+F RS R W +V + + N VF WRI + FM F + +
Sbjct: 108 EFHSRSHTLLRQIEEKWKLLTPGEKVFVPICLINVLVFGAWRIPRLQPFMLKYFCSNPGS 167
Query: 160 FLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFY 219
+I S FSH H+++NM L+ F +LG E L LY+ + S
Sbjct: 168 --KSVCWPMILSTFSHYSGFHLLANMYVLHSFSTGAVHSLGKEQFLGLYLGAGVISSFTS 225
Query: 220 LVYHAFLAMSSKRQGM---------WVVDPSRTPALGVFL---------------IGKDM 255
VY G +V LG+ L +G D
Sbjct: 226 YVYKVITKQPGLSLGASGAIMAILGYVCTQYPETKLGIILLPIFTFSAGAAIKVIVGIDT 285
Query: 256 LRIIEGNSNISGSAHLGGAAVAALAWA 282
++ G +AHLGGAA + WA
Sbjct: 286 AGVLMGWKFFDHAAHLGGAA-CGIMWA 311
>gi|148268033|ref|YP_001246976.1| rhomboid family protein [Staphylococcus aureus subsp. aureus JH9]
gi|150394101|ref|YP_001316776.1| rhomboid family protein [Staphylococcus aureus subsp. aureus JH1]
gi|257793625|ref|ZP_05642604.1| rhomboid family protein [Staphylococcus aureus A9781]
gi|258411075|ref|ZP_05681355.1| rhomboid family protein [Staphylococcus aureus A9763]
gi|258420121|ref|ZP_05683076.1| rhomboid family protein [Staphylococcus aureus A9719]
gi|258446794|ref|ZP_05694948.1| rhomboid family protein [Staphylococcus aureus A6300]
gi|258448708|ref|ZP_05696820.1| rhomboid family protein [Staphylococcus aureus A6224]
gi|258453525|ref|ZP_05701503.1| rhomboid family protein [Staphylococcus aureus A5937]
gi|282928182|ref|ZP_06335787.1| rhomboid family protein [Staphylococcus aureus A10102]
gi|295406672|ref|ZP_06816477.1| rhomboid family protein [Staphylococcus aureus A8819]
gi|297245746|ref|ZP_06929611.1| rhomboid family protein [Staphylococcus aureus A8796]
gi|384864770|ref|YP_005750129.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ECT-R
2]
gi|387150692|ref|YP_005742256.1| Putative membrane peptidase, contains TPR repeat domain
[Staphylococcus aureus 04-02981]
gi|415692667|ref|ZP_11454587.1| Rhomboid family protein [Staphylococcus aureus subsp. aureus CGS03]
gi|417651337|ref|ZP_12301100.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21172]
gi|418424698|ref|ZP_12997812.1| hypothetical protein MQA_00546 [Staphylococcus aureus subsp. aureus
VRS1]
gi|418427692|ref|ZP_13000697.1| hypothetical protein MQC_00501 [Staphylococcus aureus subsp. aureus
VRS2]
gi|418433677|ref|ZP_13006269.1| hypothetical protein MQG_01236 [Staphylococcus aureus subsp. aureus
VRS4]
gi|418437172|ref|ZP_13008968.1| hypothetical protein MQI_01256 [Staphylococcus aureus subsp. aureus
VRS5]
gi|418440072|ref|ZP_13011773.1| hypothetical protein MQK_01111 [Staphylococcus aureus subsp. aureus
VRS6]
gi|418443090|ref|ZP_13014689.1| hypothetical protein MQM_01203 [Staphylococcus aureus subsp. aureus
VRS7]
gi|418446152|ref|ZP_13017626.1| hypothetical protein MQO_01783 [Staphylococcus aureus subsp. aureus
VRS8]
gi|418449166|ref|ZP_13020552.1| hypothetical protein MQQ_01563 [Staphylococcus aureus subsp. aureus
VRS9]
gi|418451979|ref|ZP_13023313.1| hypothetical protein MQS_00457 [Staphylococcus aureus subsp. aureus
VRS10]
gi|418454973|ref|ZP_13026232.1| hypothetical protein MQU_01088 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|418457851|ref|ZP_13029050.1| hypothetical protein MQW_01368 [Staphylococcus aureus subsp. aureus
VRS11b]
gi|418640342|ref|ZP_13202574.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-3]
gi|418878467|ref|ZP_13432702.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1165]
gi|418881233|ref|ZP_13435450.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1213]
gi|418884081|ref|ZP_13438274.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1769]
gi|418895312|ref|ZP_13449407.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1057]
gi|418991477|ref|ZP_13539138.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1096]
gi|419784633|ref|ZP_14310396.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-M]
gi|147741102|gb|ABQ49400.1| Rhomboid family protein [Staphylococcus aureus subsp. aureus JH9]
gi|149946553|gb|ABR52489.1| Rhomboid family protein [Staphylococcus aureus subsp. aureus JH1]
gi|257787597|gb|EEV25937.1| rhomboid family protein [Staphylococcus aureus A9781]
gi|257840225|gb|EEV64689.1| rhomboid family protein [Staphylococcus aureus A9763]
gi|257843832|gb|EEV68226.1| rhomboid family protein [Staphylococcus aureus A9719]
gi|257854369|gb|EEV77318.1| rhomboid family protein [Staphylococcus aureus A6300]
gi|257857986|gb|EEV80875.1| rhomboid family protein [Staphylococcus aureus A6224]
gi|257864256|gb|EEV87006.1| rhomboid family protein [Staphylococcus aureus A5937]
gi|282589989|gb|EFB95071.1| rhomboid family protein [Staphylococcus aureus A10102]
gi|285817231|gb|ADC37718.1| Putative membrane peptidase, contains TPR repeat domain
[Staphylococcus aureus 04-02981]
gi|294968419|gb|EFG44443.1| rhomboid family protein [Staphylococcus aureus A8819]
gi|297177397|gb|EFH36649.1| rhomboid family protein [Staphylococcus aureus A8796]
gi|312829937|emb|CBX34779.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ECT-R
2]
gi|315129827|gb|EFT85817.1| Rhomboid family protein [Staphylococcus aureus subsp. aureus CGS03]
gi|329727521|gb|EGG63977.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21172]
gi|375014906|gb|EHS08577.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-3]
gi|377694589|gb|EHT18954.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1165]
gi|377695118|gb|EHT19482.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1057]
gi|377714416|gb|EHT38617.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1769]
gi|377723599|gb|EHT47724.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1096]
gi|377730976|gb|EHT55034.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1213]
gi|383363843|gb|EID41169.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-M]
gi|387717980|gb|EIK05975.1| hypothetical protein MQC_00501 [Staphylococcus aureus subsp. aureus
VRS2]
gi|387719477|gb|EIK07422.1| hypothetical protein MQA_00546 [Staphylococcus aureus subsp. aureus
VRS1]
gi|387724901|gb|EIK12532.1| hypothetical protein MQG_01236 [Staphylococcus aureus subsp. aureus
VRS4]
gi|387727160|gb|EIK14692.1| hypothetical protein MQI_01256 [Staphylococcus aureus subsp. aureus
VRS5]
gi|387730222|gb|EIK17629.1| hypothetical protein MQK_01111 [Staphylococcus aureus subsp. aureus
VRS6]
gi|387735290|gb|EIK22419.1| hypothetical protein MQO_01783 [Staphylococcus aureus subsp. aureus
VRS8]
gi|387736766|gb|EIK23854.1| hypothetical protein MQM_01203 [Staphylococcus aureus subsp. aureus
VRS7]
gi|387736929|gb|EIK24015.1| hypothetical protein MQQ_01563 [Staphylococcus aureus subsp. aureus
VRS9]
gi|387744860|gb|EIK31624.1| hypothetical protein MQS_00457 [Staphylococcus aureus subsp. aureus
VRS10]
gi|387745026|gb|EIK31788.1| hypothetical protein MQU_01088 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|387746619|gb|EIK33348.1| hypothetical protein MQW_01368 [Staphylococcus aureus subsp. aureus
VRS11b]
Length = 487
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
N + G + ++TS F H EHI+ NM+ L+ FG + +G +L +Y + G+
Sbjct: 196 NVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFV 255
Query: 219 YLVYHA-----------FLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG----NS 263
L ++ F + S M+V LG LI L I+ G S
Sbjct: 256 SLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIA---LVILVGVSLFMS 312
Query: 264 NISGSAHLGG 273
NI+ AH+GG
Sbjct: 313 NINIVAHIGG 322
>gi|83317564|ref|XP_731215.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23491183|gb|EAA22780.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 496
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 71/181 (39%), Gaps = 37/181 (20%)
Query: 118 LRQYGSSEVVYGLIIANTAVFMLWRIADP-----------------------KFMANNFT 154
++ Y S V Y LI + V+ LW A P +FM F
Sbjct: 251 MQHYNKSPVTYSLIFLHFFVYFLWINAKPDNMSYSYFSPAPIKSHSFSLLTSEFMYKYFC 310
Query: 155 ISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIG 214
SL + +L+TL+T+ SH ++ + N I L++ G S+ + + Y+ I
Sbjct: 311 CSLKSLREKQLYTLVTNIISHNTIQSFLLNTISLFYIGRSLEILINSKNFFFTYIVSGII 370
Query: 215 GSVFYLVYHAFLAMSSKRQGMWVVDPSRT------------PALGVFLIGKDMLRIIEGN 262
S ++Y S + ++V+ S + P ++L G L ++ GN
Sbjct: 371 SSYIQILYQK--NSSYGYKNVYVLGASGSISSILATYTFIHPNHKIYLYGVLGLPLVSGN 428
Query: 263 S 263
+
Sbjct: 429 T 429
>gi|417649370|ref|ZP_12299174.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21189]
gi|440735000|ref|ZP_20914611.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus DSM
20231]
gi|329728476|gb|EGG64913.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21189]
gi|436431095|gb|ELP28449.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus DSM
20231]
Length = 487
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
N + G + ++TS F H EHI+ NM+ L+ FG + +G +L +Y + G+
Sbjct: 196 NVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFV 255
Query: 219 YLVYHA-----------FLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG----NS 263
L ++ F + S M+V LG LI L I+ G S
Sbjct: 256 SLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIA---LVILVGVSLFMS 312
Query: 264 NISGSAHLGG 273
NI+ AH+GG
Sbjct: 313 NINIVAHIGG 322
>gi|253733201|ref|ZP_04867366.1| S54 family peptidase [Staphylococcus aureus subsp. aureus TCH130]
gi|417897863|ref|ZP_12541789.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21259]
gi|253728741|gb|EES97470.1| S54 family peptidase [Staphylococcus aureus subsp. aureus TCH130]
gi|341849365|gb|EGS90508.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21259]
Length = 487
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
N + G + ++TS F H EHI+ NM+ L+ FG + +G +L +Y + G+
Sbjct: 196 NVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFV 255
Query: 219 YLVYHA-----------FLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG----NS 263
L ++ F + S M+V LG LI L I+ G S
Sbjct: 256 SLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIA---LVILVGVSLFMS 312
Query: 264 NISGSAHLGG 273
NI+ AH+GG
Sbjct: 313 NINIVAHIGG 322
>gi|332664184|ref|YP_004446972.1| rhomboid family protein [Haliscomenobacter hydrossis DSM 1100]
gi|332332998|gb|AEE50099.1| Rhomboid family protein [Haliscomenobacter hydrossis DSM 1100]
Length = 228
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 86/204 (42%), Gaps = 40/204 (19%)
Query: 126 VVYGLIIANTAVFMLW---RIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIV 182
V Y L+ N VF+L +F+ I + R++TLITS F H V HIV
Sbjct: 18 VSYTLLAINIVVFLLQLSQGDQQGQFIMEYGAIPAEVTQGQRVYTLITSMFLHGSVGHIV 77
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH------------------- 223
NM+ L+ F +I +G L Y+AG + ++ ++
Sbjct: 78 GNMLFLWIFADNIEAVIGSTRFLIFYLAGGLVAHAAHIYFNMDSQIPTVGASGAIAGVLG 137
Query: 224 AFLAM--SSKRQGMWVVDPSRTPAL--------GVFLIGKDMLRIIEGNSN-ISGSAHLG 272
A++ M S+ + ++++ P R PAL F G L+I ++ I+ AH+G
Sbjct: 138 AYMIMFPQSQVKVLFLIFPFRVPALLFLGFWIFSQFQYGVGSLQIETAETDGIAYWAHIG 197
Query: 273 GAAVAAL-------AWARIRRRGF 289
G A+ + R +RGF
Sbjct: 198 GFVFGAVRGFSLRNEYIRSLKRGF 221
>gi|384550376|ref|YP_005739628.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus JKD6159]
gi|302333225|gb|ADL23418.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus JKD6159]
Length = 487
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
N + G + ++TS F H EHI+ NM+ L+ FG + +G +L +Y + G+
Sbjct: 196 NVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFV 255
Query: 219 YLVYHA-----------FLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG----NS 263
L ++ F + S M+V LG LI L I+ G S
Sbjct: 256 SLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIA---LVILVGVSLFMS 312
Query: 264 NISGSAHLGG 273
NI+ AH+GG
Sbjct: 313 NINIVAHIGG 322
>gi|258423202|ref|ZP_05686095.1| conserved hypothetical protein [Staphylococcus aureus A9635]
gi|417889989|ref|ZP_12534068.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21200]
gi|418284049|ref|ZP_12896781.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21202]
gi|418558986|ref|ZP_13123533.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21252]
gi|418889364|ref|ZP_13443497.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1524]
gi|257846652|gb|EEV70673.1| conserved hypothetical protein [Staphylococcus aureus A9635]
gi|341855682|gb|EGS96526.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21200]
gi|365164913|gb|EHM56743.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21202]
gi|371976336|gb|EHO93626.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21252]
gi|377752872|gb|EHT76790.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1524]
Length = 487
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
N + G + ++TS F H EHI+ NM+ L+ FG + +G +L +Y + G+
Sbjct: 196 NVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFV 255
Query: 219 YLVYHA-----------FLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG----NS 263
L ++ F + S M+V LG LI L I+ G S
Sbjct: 256 SLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIA---LVILVGVSLFMS 312
Query: 264 NISGSAHLGG 273
NI+ AH+GG
Sbjct: 313 NINIVAHIGG 322
>gi|21283230|ref|NP_646318.1| hypothetical protein MW1501 [Staphylococcus aureus subsp. aureus
MW2]
gi|49486385|ref|YP_043606.1| hypothetical protein SAS1487 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|253732202|ref|ZP_04866367.1| S54 family peptidase [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|297207732|ref|ZP_06924167.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|300911813|ref|ZP_07129256.1| rhomboid family protein [Staphylococcus aureus subsp. aureus TCH70]
gi|418934519|ref|ZP_13488341.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC128]
gi|418988616|ref|ZP_13536288.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1835]
gi|448740624|ref|ZP_21722600.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
KT/314250]
gi|21204670|dbj|BAB95366.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MW2]
gi|49244828|emb|CAG43288.1| putative membrane protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|253723991|gb|EES92720.1| S54 family peptidase [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|296887749|gb|EFH26647.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|300886059|gb|EFK81261.1| rhomboid family protein [Staphylococcus aureus subsp. aureus TCH70]
gi|377717709|gb|EHT41884.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1835]
gi|377770613|gb|EHT94374.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC128]
gi|445548591|gb|ELY16841.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
KT/314250]
Length = 487
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
N + G + ++TS F H EHI+ NM+ L+ FG + +G +L +Y + G+
Sbjct: 196 NVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFV 255
Query: 219 YLVYHA-----------FLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG----NS 263
L ++ F + S M+V LG LI L I+ G S
Sbjct: 256 SLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIA---LVILVGVSLFMS 312
Query: 264 NISGSAHLGG 273
NI+ AH+GG
Sbjct: 313 NINIVAHIGG 322
>gi|15924539|ref|NP_372073.1| hypothetical protein SAV1549 [Staphylococcus aureus subsp. aureus
Mu50]
gi|15927129|ref|NP_374662.1| hypothetical protein SA1379 [Staphylococcus aureus subsp. aureus
N315]
gi|57651942|ref|YP_186446.1| rhomboid family protein [Staphylococcus aureus subsp. aureus COL]
gi|87160848|ref|YP_494204.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|151221664|ref|YP_001332486.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156979867|ref|YP_001442126.1| hypothetical protein SAHV_1536 [Staphylococcus aureus subsp. aureus
Mu3]
gi|161509778|ref|YP_001575437.1| peptidase [Staphylococcus aureus subsp. aureus USA300_TCH1516]
gi|253314920|ref|ZP_04838133.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|255006335|ref|ZP_05144936.2| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|257425674|ref|ZP_05602098.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
55/2053]
gi|257428335|ref|ZP_05604733.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257430972|ref|ZP_05607352.1| peptidase [Staphylococcus aureus subsp. aureus 68-397]
gi|257433660|ref|ZP_05610018.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
E1410]
gi|257436574|ref|ZP_05612618.1| peptidase [Staphylococcus aureus subsp. aureus M876]
gi|258437381|ref|ZP_05689365.1| peptidase [Staphylococcus aureus A9299]
gi|258450622|ref|ZP_05698684.1| peptidase [Staphylococcus aureus A5948]
gi|262049127|ref|ZP_06022004.1| hypothetical protein SAD30_0284 [Staphylococcus aureus D30]
gi|262051211|ref|ZP_06023435.1| hypothetical protein SA930_1642 [Staphylococcus aureus 930918-3]
gi|269203177|ref|YP_003282446.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ED98]
gi|282911187|ref|ZP_06318989.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282914356|ref|ZP_06322142.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M899]
gi|282916819|ref|ZP_06324577.1| peptidase [Staphylococcus aureus subsp. aureus D139]
gi|282919325|ref|ZP_06327060.1| peptidase [Staphylococcus aureus subsp. aureus C427]
gi|282920098|ref|ZP_06327823.1| peptidase [Staphylococcus aureus A9765]
gi|282924650|ref|ZP_06332318.1| peptidase [Staphylococcus aureus subsp. aureus C101]
gi|283770625|ref|ZP_06343517.1| peptidase [Staphylococcus aureus subsp. aureus H19]
gi|284024608|ref|ZP_06379006.1| rhomboid family protein [Staphylococcus aureus subsp. aureus 132]
gi|293503430|ref|ZP_06667277.1| peptidase [Staphylococcus aureus subsp. aureus 58-424]
gi|293510447|ref|ZP_06669153.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M809]
gi|293530987|ref|ZP_06671669.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M1015]
gi|294848580|ref|ZP_06789326.1| peptidase [Staphylococcus aureus A9754]
gi|304380862|ref|ZP_07363522.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|384547782|ref|YP_005737035.1| membrane protein [Staphylococcus aureus subsp. aureus ED133]
gi|384870090|ref|YP_005752804.1| Peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus T0131]
gi|385781834|ref|YP_005758005.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
11819-97]
gi|387143156|ref|YP_005731549.1| hypothetical protein SATW20_15450 [Staphylococcus aureus subsp.
aureus TW20]
gi|415686263|ref|ZP_11450400.1| S54 family peptidase [Staphylococcus aureus subsp. aureus CGS01]
gi|416840018|ref|ZP_11903337.1| rhomboid family peptidase [Staphylococcus aureus O11]
gi|416845827|ref|ZP_11906228.1| rhomboid family peptidase [Staphylococcus aureus O46]
gi|417654442|ref|ZP_12304161.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21193]
gi|417797331|ref|ZP_12444527.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21305]
gi|417892437|ref|ZP_12536486.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21201]
gi|417905331|ref|ZP_12549142.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21269]
gi|418277349|ref|ZP_12891936.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21178]
gi|418285050|ref|ZP_12897750.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21209]
gi|418316423|ref|ZP_12927861.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21340]
gi|418319401|ref|ZP_12930781.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21232]
gi|418321319|ref|ZP_12932665.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus VCU006]
gi|418569512|ref|ZP_13133838.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21283]
gi|418574454|ref|ZP_13138623.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21333]
gi|418579474|ref|ZP_13143569.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1114]
gi|418599967|ref|ZP_13163441.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21343]
gi|418641900|ref|ZP_13204105.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-24]
gi|418645086|ref|ZP_13207214.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-55]
gi|418646803|ref|ZP_13208896.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-88]
gi|418650585|ref|ZP_13212603.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-91]
gi|418658392|ref|ZP_13220120.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-111]
gi|418875489|ref|ZP_13429745.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC93]
gi|418903856|ref|ZP_13457897.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1770]
gi|418912160|ref|ZP_13466141.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG547]
gi|418914647|ref|ZP_13468619.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|418925809|ref|ZP_13479711.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG2018]
gi|418948536|ref|ZP_13500834.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-157]
gi|419773145|ref|ZP_14299156.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus CO-23]
gi|421148571|ref|ZP_15608231.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. Newbould 305]
gi|422742667|ref|ZP_16796670.1| peptidase, S54 family protein [Staphylococcus aureus subsp. aureus
MRSA177]
gi|424768990|ref|ZP_18196227.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus CM05]
gi|424785384|ref|ZP_18212187.1| rhomboid family serine protease [Staphylococcus aureus CN79]
gi|440707269|ref|ZP_20887968.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21282]
gi|443640018|ref|ZP_21124018.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21196]
gi|448743065|ref|ZP_21724979.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
KT/Y21]
gi|13701347|dbj|BAB42641.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
N315]
gi|14247320|dbj|BAB57711.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu50]
gi|57286128|gb|AAW38222.1| rhomboid family protein [Staphylococcus aureus subsp. aureus COL]
gi|87126822|gb|ABD21336.1| peptidase, rhomboid family [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|150374464|dbj|BAF67724.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156722002|dbj|BAF78419.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu3]
gi|160368587|gb|ABX29558.1| S54 family peptidase [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|257271368|gb|EEV03514.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
55/2053]
gi|257275176|gb|EEV06663.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257278402|gb|EEV09038.1| peptidase [Staphylococcus aureus subsp. aureus 68-397]
gi|257281753|gb|EEV11890.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
E1410]
gi|257283925|gb|EEV14048.1| peptidase [Staphylococcus aureus subsp. aureus M876]
gi|257848586|gb|EEV72574.1| peptidase [Staphylococcus aureus A9299]
gi|257861780|gb|EEV84579.1| peptidase [Staphylococcus aureus A5948]
gi|259160848|gb|EEW45868.1| hypothetical protein SA930_1642 [Staphylococcus aureus 930918-3]
gi|259162796|gb|EEW47361.1| hypothetical protein SAD30_0284 [Staphylococcus aureus D30]
gi|262075467|gb|ACY11440.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ED98]
gi|269941039|emb|CBI49423.1| putative membrane protein [Staphylococcus aureus subsp. aureus
TW20]
gi|282313485|gb|EFB43880.1| peptidase [Staphylococcus aureus subsp. aureus C101]
gi|282317135|gb|EFB47509.1| peptidase [Staphylococcus aureus subsp. aureus C427]
gi|282319306|gb|EFB49658.1| peptidase [Staphylococcus aureus subsp. aureus D139]
gi|282321537|gb|EFB51862.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M899]
gi|282324882|gb|EFB55192.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282594446|gb|EFB99431.1| peptidase [Staphylococcus aureus A9765]
gi|283460772|gb|EFC07862.1| peptidase [Staphylococcus aureus subsp. aureus H19]
gi|290920255|gb|EFD97321.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M1015]
gi|291095096|gb|EFE25361.1| peptidase [Staphylococcus aureus subsp. aureus 58-424]
gi|291466811|gb|EFF09331.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M809]
gi|294824606|gb|EFG41029.1| peptidase [Staphylococcus aureus A9754]
gi|298694831|gb|ADI98053.1| probable membrane protein [Staphylococcus aureus subsp. aureus
ED133]
gi|304340589|gb|EFM06523.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|315198756|gb|EFU29084.1| S54 family peptidase [Staphylococcus aureus subsp. aureus CGS01]
gi|320144103|gb|EFW35872.1| peptidase, S54 family protein [Staphylococcus aureus subsp. aureus
MRSA177]
gi|323440447|gb|EGA98159.1| rhomboid family peptidase [Staphylococcus aureus O11]
gi|323443221|gb|EGB00839.1| rhomboid family peptidase [Staphylococcus aureus O46]
gi|329314225|gb|AEB88638.1| Peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus T0131]
gi|329730828|gb|EGG67206.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21193]
gi|334266823|gb|EGL85293.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21305]
gi|341843607|gb|EGS84829.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21269]
gi|341857602|gb|EGS98414.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21201]
gi|364522823|gb|AEW65573.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
11819-97]
gi|365172061|gb|EHM62806.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21209]
gi|365173639|gb|EHM64128.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21178]
gi|365225551|gb|EHM66794.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus VCU006]
gi|365240520|gb|EHM81292.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21232]
gi|365241107|gb|EHM81862.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21340]
gi|371979181|gb|EHO96416.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21333]
gi|371985641|gb|EHP02702.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21283]
gi|374395556|gb|EHQ66819.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21343]
gi|375018355|gb|EHS11935.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-24]
gi|375023919|gb|EHS17364.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-55]
gi|375027871|gb|EHS21229.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-91]
gi|375032097|gb|EHS25352.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-88]
gi|375038662|gb|EHS31625.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-111]
gi|375371869|gb|EHS75629.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-157]
gi|377697501|gb|EHT21856.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1114]
gi|377722417|gb|EHT46543.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG547]
gi|377742871|gb|EHT66856.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1770]
gi|377744878|gb|EHT68855.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG2018]
gi|377758149|gb|EHT82037.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|377769561|gb|EHT93329.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC93]
gi|383972969|gb|EID88990.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus CO-23]
gi|394331714|gb|EJE57797.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. Newbould 305]
gi|402348381|gb|EJU83373.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus CM05]
gi|408423672|emb|CCJ11083.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408425662|emb|CCJ13049.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408427649|emb|CCJ15012.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408429638|emb|CCJ26803.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408431625|emb|CCJ18940.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408433619|emb|CCJ20904.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408435611|emb|CCJ22871.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408437595|emb|CCJ24838.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|421956794|gb|EKU09123.1| rhomboid family serine protease [Staphylococcus aureus CN79]
gi|436506025|gb|ELP41864.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21282]
gi|443406293|gb|ELS64877.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21196]
gi|445563752|gb|ELY19909.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
KT/Y21]
Length = 487
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
N + G + ++TS F H EHI+ NM+ L+ FG + +G +L +Y + G+
Sbjct: 196 NVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFV 255
Query: 219 YLVYHA-----------FLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG----NS 263
L ++ F + S M+V LG LI L I+ G S
Sbjct: 256 SLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIA---LVILVGVSLFMS 312
Query: 264 NISGSAHLGG 273
NI+ AH+GG
Sbjct: 313 NINIVAHIGG 322
>gi|418313141|ref|ZP_12924635.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21334]
gi|365236412|gb|EHM77301.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21334]
Length = 487
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
N + G + ++TS F H EHI+ NM+ L+ FG + +G +L +Y + G+
Sbjct: 196 NVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFV 255
Query: 219 YLVYHA-----------FLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG----NS 263
L ++ F + S M+V LG LI L I+ G S
Sbjct: 256 SLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIA---LVILVGVSLFMS 312
Query: 264 NISGSAHLGG 273
NI+ AH+GG
Sbjct: 313 NINIVAHIGG 322
>gi|300025024|ref|YP_003757635.1| rhomboid family protein [Hyphomicrobium denitrificans ATCC 51888]
gi|299526845|gb|ADJ25314.1| Rhomboid family protein [Hyphomicrobium denitrificans ATCC 51888]
Length = 219
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMAN-NFTIS-LDNFLSGRLHTLITSAFSHIDVEHIVS 183
V YGLI N VF+L A +F+ + +F S ++ +G L TL+T+ F H H+
Sbjct: 17 VTYGLIAINVLVFLLELNAGDQFIQDWSFIPSRFNDDPAGNLPTLLTAMFMHGGWMHLFG 76
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAI 213
NM+ LY FG +I G L Y+A I
Sbjct: 77 NMLYLYIFGDNIEDRFGHVRFLAFYLACGI 106
>gi|82751152|ref|YP_416893.1| hypothetical protein SAB1421c [Staphylococcus aureus RF122]
gi|82656683|emb|CAI81110.1| probable membrane protein [Staphylococcus aureus RF122]
Length = 487
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
N + G + ++TS F H EHI+ NM+ L+ FG + +G +L +Y + G+
Sbjct: 196 NVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFV 255
Query: 219 YLVYHA-----------FLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG----NS 263
L ++ F + S M+V LG LI L I+ G S
Sbjct: 256 SLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIA---LVILVGVSLFMS 312
Query: 264 NISGSAHLGG 273
NI+ AH+GG
Sbjct: 313 NINIVAHIGG 322
>gi|49483798|ref|YP_041022.1| hypothetical protein SAR1626 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|282904131|ref|ZP_06312019.1| rhomboid family protein [Staphylococcus aureus subsp. aureus C160]
gi|282905958|ref|ZP_06313813.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282908868|ref|ZP_06316686.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|283958313|ref|ZP_06375764.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
A017934/97]
gi|295428127|ref|ZP_06820759.1| hypothetical protein SIAG_00655 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297590907|ref|ZP_06949545.1| rhomboid family protein [Staphylococcus aureus subsp. aureus MN8]
gi|415682351|ref|ZP_11447667.1| hypothetical protein CGSSa00_07270 [Staphylococcus aureus subsp.
aureus CGS00]
gi|417887902|ref|ZP_12532021.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21195]
gi|418564826|ref|ZP_13129247.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21264]
gi|418582476|ref|ZP_13146554.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1605]
gi|418597192|ref|ZP_13160725.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21342]
gi|418601009|ref|ZP_13164457.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21345]
gi|418901054|ref|ZP_13455110.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1214]
gi|418909401|ref|ZP_13463397.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG149]
gi|418923231|ref|ZP_13477147.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1233]
gi|418982555|ref|ZP_13530263.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1242]
gi|418986221|ref|ZP_13533906.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1500]
gi|49241927|emb|CAG40621.1| putative membrane protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|282327132|gb|EFB57427.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282331250|gb|EFB60764.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282595749|gb|EFC00713.1| rhomboid family protein [Staphylococcus aureus subsp. aureus C160]
gi|283790462|gb|EFC29279.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
A017934/97]
gi|295128485|gb|EFG58119.1| hypothetical protein SIAG_00655 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297575793|gb|EFH94509.1| rhomboid family protein [Staphylococcus aureus subsp. aureus MN8]
gi|315195451|gb|EFU25838.1| hypothetical protein CGSSa00_07270 [Staphylococcus aureus subsp.
aureus CGS00]
gi|341856931|gb|EGS97758.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21195]
gi|371975963|gb|EHO93255.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21264]
gi|374395428|gb|EHQ66695.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21342]
gi|374400256|gb|EHQ71375.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21345]
gi|377702451|gb|EHT26773.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1214]
gi|377704265|gb|EHT28575.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1500]
gi|377704836|gb|EHT29145.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1242]
gi|377710886|gb|EHT35124.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1605]
gi|377735190|gb|EHT59226.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1233]
gi|377752048|gb|EHT75972.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG149]
Length = 487
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
N + G + ++TS F H EHI+ NM+ L+ FG + +G +L +Y + G+
Sbjct: 196 NVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFV 255
Query: 219 YLVYHA-----------FLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG----NS 263
L ++ F + S M+V LG LI L I+ G S
Sbjct: 256 SLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIA---LVILVGVSLFMS 312
Query: 264 NISGSAHLGG 273
NI+ AH+GG
Sbjct: 313 NINIVAHIGG 322
>gi|386831159|ref|YP_006237813.1| hypothetical protein SAEMRSA15_14690 [Staphylococcus aureus subsp.
aureus HO 5096 0412]
gi|417798923|ref|ZP_12446077.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21310]
gi|418654972|ref|ZP_13216857.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-105]
gi|334275085|gb|EGL93386.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21310]
gi|375038535|gb|EHS31510.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-105]
gi|385196551|emb|CCG16180.1| putative membrane protein [Staphylococcus aureus subsp. aureus HO
5096 0412]
Length = 487
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
N + G + ++TS F H EHI+ NM+ L+ FG + +G +L +Y + G+
Sbjct: 196 NVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFV 255
Query: 219 YLVYHA-----------FLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG----NS 263
L ++ F + S M+V LG LI L I+ G S
Sbjct: 256 SLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIA---LVILVGVSLFMS 312
Query: 264 NISGSAHLGG 273
NI+ AH+GG
Sbjct: 313 NINIVAHIGG 322
>gi|449547816|gb|EMD38783.1| hypothetical protein CERSUDRAFT_112527 [Ceriporiopsis subvermispora
B]
Length = 474
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 122 GSSE---VVYGLIIANTAVFMLWRIADPK-FMANNFTISLDNFLSGRLHTLITSAFSHID 177
GS E + + + N AVF+LWR K FM +NFT + LSG+ T++TS FSH
Sbjct: 205 GSDEGKRICWAIGALNGAVFLLWRFKFLKPFMMSNFT---HHPLSGKAFTMLTSTFSHES 261
Query: 178 VEHIVSNMIGLYFFGMS 194
+ H + N + L FG +
Sbjct: 262 LLHYLFNAMALASFGAA 278
>gi|418430534|ref|ZP_13003445.1| hypothetical protein MQE_01426 [Staphylococcus aureus subsp. aureus
VRS3a]
gi|387718274|gb|EIK06258.1| hypothetical protein MQE_01426 [Staphylococcus aureus subsp. aureus
VRS3a]
Length = 487
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
N + G + ++TS F H EHI+ NM+ L+ FG + +G +L +Y + G+
Sbjct: 196 NVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFV 255
Query: 219 YLVYHA-----------FLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG----NS 263
L ++ F + S M+V LG LI L I+ G S
Sbjct: 256 SLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIA---LVILVGVSLFMS 312
Query: 264 NISGSAHLGG 273
NI+ AH+GG
Sbjct: 313 NINIVAHIGG 322
>gi|418528432|ref|ZP_13094382.1| Rhomboid-like protein [Comamonas testosteroni ATCC 11996]
gi|371454808|gb|EHN67810.1| Rhomboid-like protein [Comamonas testosteroni ATCC 11996]
Length = 500
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 170 TSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA 224
TS F H H++ NM+ L+ FG ++ LG L Y+ G IG S+F L+++A
Sbjct: 164 TSIFLHGSTSHLLGNMVFLFLFGFTLELALGAFTYLAFYVIGGIGASLFALMFYA 218
>gi|401412878|ref|XP_003885886.1| hypothetical protein NCLIV_062860 [Neospora caninum Liverpool]
gi|325120306|emb|CBZ55860.1| hypothetical protein NCLIV_062860 [Neospora caninum Liverpool]
Length = 395
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 121 YGSSEVVYGLIIANTAVFMLWRIADP-------KFMANNFTISLDNFLSGRLHTLITSAF 173
Y +++ ++ N AVF WR A F NF + + RLHT +TS
Sbjct: 109 YEHRKLLGAFLLTNAAVFTGWRAATAAGSELWQTFFMRNFVLCRETLTGARLHTFLTSCL 168
Query: 174 SHIDVEHIVSNM 185
SH + H++ N+
Sbjct: 169 SHKNTSHLIFNL 180
>gi|221140031|ref|ZP_03564524.1| peptidase [Staphylococcus aureus subsp. aureus str. JKD6009]
gi|384862151|ref|YP_005744871.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. JKD6008]
gi|302751380|gb|ADL65557.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. JKD6008]
Length = 487
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
N + G + ++TS F H EHI+ NM+ L+ FG + +G +L +Y + G+
Sbjct: 196 NVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFV 255
Query: 219 YLVYHA-----------FLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG----NS 263
L ++ F + S M+V LG LI L I+ G S
Sbjct: 256 SLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIA---LVILVGVSLFMS 312
Query: 264 NISGSAHLGG 273
NI+ AH+GG
Sbjct: 313 NINIVAHIGG 322
>gi|379795908|ref|YP_005325906.1| putative serine protease [Staphylococcus aureus subsp. aureus
MSHR1132]
gi|356872898|emb|CCE59237.1| putative serine protease [Staphylococcus aureus subsp. aureus
MSHR1132]
Length = 487
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 61/137 (44%), Gaps = 32/137 (23%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLY-MAGAIG--- 214
N + G + +ITS F H EHI+ NM+ L+ FG + +G +L +Y +AG G
Sbjct: 196 NVVHGEWYRIITSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLGIYFIAGLFGNFV 255
Query: 215 --------------GSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIE 260
G++F L+ A AM M+V LG +I L I+
Sbjct: 256 SLSFNTTTISVGASGAIFGLI-GAIFAM------MYVSKTFNKKMLGQLMIA---LVILI 305
Query: 261 G----NSNISGSAHLGG 273
G SNI+ AH+GG
Sbjct: 306 GVSLFMSNINIVAHIGG 322
>gi|387780641|ref|YP_005755439.1| hypothetical protein SARLGA251_14550 [Staphylococcus aureus subsp.
aureus LGA251]
gi|344177743|emb|CCC88222.1| putative membrane protein [Staphylococcus aureus subsp. aureus
LGA251]
Length = 487
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
N + G + ++TS F H EHI+ NM+ L+ FG + +G +L +Y + G+
Sbjct: 196 NVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFV 255
Query: 219 YLVYHA-----------FLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG----NS 263
L ++ F + S M+V LG LI L I+ G S
Sbjct: 256 SLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIA---LVILVGVSLFMS 312
Query: 264 NISGSAHLGG 273
NI+ AH+GG
Sbjct: 313 NINIVAHIGG 322
>gi|386729250|ref|YP_006195633.1| integral membrane protein (Rhomboid family) [Staphylococcus aureus
subsp. aureus 71193]
gi|387602889|ref|YP_005734410.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ST398]
gi|404478900|ref|YP_006710330.1| hypothetical protein C248_1592 [Staphylococcus aureus 08BA02176]
gi|418309989|ref|ZP_12921539.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21331]
gi|418978272|ref|ZP_13526073.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
subsp. aureus DR10]
gi|283470827|emb|CAQ50038.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ST398]
gi|365237446|gb|EHM78292.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21331]
gi|379993888|gb|EIA15333.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
subsp. aureus DR10]
gi|384230543|gb|AFH69790.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
subsp. aureus 71193]
gi|404440389|gb|AFR73582.1| putative membrane protein [Staphylococcus aureus 08BA02176]
Length = 487
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
N + G + ++TS F H EHI+ NM+ L+ FG + +G +L +Y + G+
Sbjct: 196 NVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFV 255
Query: 219 YLVYHA-----------FLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG----NS 263
L ++ F + S M+V LG LI L I+ G S
Sbjct: 256 SLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIA---LVILVGVSLFMS 312
Query: 264 NISGSAHLGG 273
NI+ AH+GG
Sbjct: 313 NINIVAHIGG 322
>gi|422746158|ref|ZP_16800091.1| peptidase, S54 family protein [Staphylococcus aureus subsp. aureus
MRSA131]
gi|320140566|gb|EFW32420.1| peptidase, S54 family protein [Staphylococcus aureus subsp. aureus
MRSA131]
Length = 487
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
N + G + ++TS F H EHI+ NM+ L+ FG + +G +L +Y + G+
Sbjct: 196 NVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFV 255
Query: 219 YLVYHA-----------FLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG----NS 263
L ++ F + S M+V LG LI L I+ G S
Sbjct: 256 SLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIA---LVILVGVSLFMS 312
Query: 264 NISGSAHLGG 273
NI+ AH+GG
Sbjct: 313 NINIVAHIGG 322
>gi|88854509|ref|ZP_01129176.1| rhomboid family membrane protein [marine actinobacterium PHSC20C1]
gi|88816317|gb|EAR26172.1| rhomboid family membrane protein [marine actinobacterium PHSC20C1]
Length = 214
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 79/180 (43%), Gaps = 16/180 (8%)
Query: 122 GSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHI--DVE 179
G V Y LI AVF+L I P + + F + +ITSAF H +
Sbjct: 9 GKPVVTYTLIALTVAVFLLQLI--PASGVTSALVYYPPFTAAEPWRMITSAFLHSPSGIF 66
Query: 180 HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA---FLAMSSKRQGM- 235
HI NM L+ FG ++ LG L LY+ A+GGSV L+ L S G+
Sbjct: 67 HIGFNMFTLFIFGRALEIPLGRARFLSLYLISALGGSVAVLLLAPQTLVLGASGAIFGIV 126
Query: 236 --WVVDPSRTPA---LGVFLIGKDMLRIIEGNSNISGSAHLGG---AAVAALAWARIRRR 287
+ V R L + ++G +++ NIS AH+GG AV AL + R R R
Sbjct: 127 AAFFVIQRRMGVHNRLLIIVLGINLVAGFIPGLNISWEAHVGGLITGAVIALIFLRKRNR 186
>gi|433462194|ref|ZP_20419783.1| S54 family peptidase [Halobacillus sp. BAB-2008]
gi|432189083|gb|ELK46216.1| S54 family peptidase [Halobacillus sp. BAB-2008]
Length = 510
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNF----LSGRLHTLITSAFSHIDVEHI 181
V Y L+ N A+F+L A F + G L+TS F HI + H+
Sbjct: 183 VTYLLLAVNVALFLLLEWAGGSTNVETLIEYGAKFNPAIMEGEWWRLVTSMFLHIGLIHL 242
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
+ NM+ LY+ G ++ R G + +Y+ + GSV
Sbjct: 243 MMNMLALYYIGTAVERIYGSWRYIIIYLLAGVFGSV 278
>gi|392391024|ref|YP_006427627.1| hypothetical protein Ornrh_1677 [Ornithobacterium rhinotracheale
DSM 15997]
gi|390522102|gb|AFL97833.1| putative membrane protein [Ornithobacterium rhinotracheale DSM
15997]
Length = 237
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 10/125 (8%)
Query: 158 DNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
DNF R +++ F H D+ H+ NM+ L+ FG ++ LGP+ + LY A A+G V
Sbjct: 46 DNF---RSFQILSHMFMHGDLTHLFFNMLALFMFGSTVEMVLGPKRYVILYFASALGAYV 102
Query: 218 F-----YLVYHAFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEGNSNISGSAHLG 272
YL +A + + + P +G+ G + L I + S +
Sbjct: 103 LFNATNYLEAQQLIAAADLSPQQVALLSTLKPMMGI--PGLETLSAIYSTPMVGASGAIF 160
Query: 273 GAAVA 277
G +A
Sbjct: 161 GVLIA 165
>gi|418892279|ref|ZP_13446392.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1176]
gi|377730573|gb|EHT54640.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1176]
Length = 487
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
N + G + ++TS F H EHI+ NM+ L+ FG + +G +L +Y + G+
Sbjct: 196 NVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFV 255
Query: 219 YLVYHA-----------FLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG----NS 263
L ++ F + S M+V LG LI L I+ G S
Sbjct: 256 SLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIA---LVILVGVSLFMS 312
Query: 264 NISGSAHLGG 273
NI+ AH+GG
Sbjct: 313 NINIVAHIGG 322
>gi|296275094|ref|ZP_06857601.1| rhomboid family protein [Staphylococcus aureus subsp. aureus MR1]
Length = 487
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
N + G + ++TS F H EHI+ NM+ L+ FG + +G +L +Y + G+
Sbjct: 196 NVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFV 255
Query: 219 YLVYHA-----------FLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG----NS 263
L ++ F + S M+V LG LI L I+ G S
Sbjct: 256 SLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIA---LVILVGVSLFMS 312
Query: 264 NISGSAHLGG 273
NI+ AH+GG
Sbjct: 313 NINIVAHIGG 322
>gi|343928757|ref|ZP_08768202.1| hypothetical protein GOALK_120_01840 [Gordonia alkanivorans NBRC
16433]
gi|343761506|dbj|GAA15128.1| hypothetical protein GOALK_120_01840 [Gordonia alkanivorans NBRC
16433]
Length = 238
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 11/122 (9%)
Query: 122 GSSEVVYGLIIANTAVFMLWRI-----ADPK----FMANNFTISLDNFLSGRLHTLITSA 172
G V Y LI N +F+L + DP F + + S + +G L+TS
Sbjct: 9 GKPYVTYTLIGINILIFLLCAVQAGSFGDPGAATIFSSGDLLKS--DVAAGEYWRLLTSG 66
Query: 173 FSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKR 232
F H V H+ NM+ LY G + LG L +Y+ +GGS +++ A+++
Sbjct: 67 FLHFSVMHVAVNMLSLYILGRDLELALGMSRYLAVYLIALLGGSAAVMLFENDRALTAGA 126
Query: 233 QG 234
G
Sbjct: 127 SG 128
>gi|300698196|ref|YP_003748857.1| putative rhomboid protease [Ralstonia solanacearum CFBP2957]
gi|299074920|emb|CBJ54489.1| putative rhomboid protease [Ralstonia solanacearum CFBP2957]
Length = 543
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 18/126 (14%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
L+++ F H V H+ NM GLY G+++ R GP L +Y+ + GS L + A A
Sbjct: 230 LLSATFLHAGVLHLAINMFGLYATGVAVERIYGPVAYLLIYLGAGLLGSALSLSFAAQHA 289
Query: 228 MSSKRQ-------GMWVVDPSRTPALGVFLIGKDML---------RIIEG--NSNISGSA 269
+ G W+V R +L + K +L +++G + +A
Sbjct: 290 IGVGASGAVFGVAGAWLVAIGRYRSLMPQTLSKRLLTQLGLFVLYSLVQGLTKPGVDNAA 349
Query: 270 HLGGAA 275
H+GG A
Sbjct: 350 HIGGLA 355
>gi|319792182|ref|YP_004153822.1| rhomboid family protein [Variovorax paradoxus EPS]
gi|315594645|gb|ADU35711.1| Rhomboid family protein [Variovorax paradoxus EPS]
Length = 492
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIG 214
TLITSAF H H++ NM+ L+ FG S+ LG L Y+ G +G
Sbjct: 153 TLITSAFLHGSTGHLLGNMLFLFLFGASVELALGRSTYLTFYLLGCVG 200
>gi|89890964|ref|ZP_01202473.1| putative transmembrane rhomboid family protein [Flavobacteria
bacterium BBFL7]
gi|89517109|gb|EAS19767.1| putative transmembrane rhomboid family protein [Flavobacteria
bacterium BBFL7]
Length = 212
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%)
Query: 146 PKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLL 205
+F + + ++ G +TS F H D++H++ NM+ LYFF + LG L
Sbjct: 26 DRFFFDKYKFNIAGIQRGEQLRFLTSGFLHADMQHLIFNMLTLYFFAHYVVVDLGDIGFL 85
Query: 206 KLYMAGAIGGSVFYLVYH 223
+Y A +GG V V+H
Sbjct: 86 VVYFASLLGGGVLSYVFH 103
>gi|345866795|ref|ZP_08818816.1| rhomboid family protein [Bizionia argentinensis JUB59]
gi|344048715|gb|EGV44318.1| rhomboid family protein [Bizionia argentinensis JUB59]
Length = 296
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 62/144 (43%), Gaps = 31/144 (21%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV-YHAF 225
++I+ AF H D H NMI LYF G + L +Y GAI G V +L+ Y+ F
Sbjct: 61 SVISYAFVHYDFWHFFFNMIWLYFIGGMFTNMFSTKMGLNIYFLGAISGGVLFLLGYNLF 120
Query: 226 ----------LAMSSKRQGMWVVDPSRTPAL--------------GVFLIGKDMLRIIEG 261
+ S+ + + + + P++ G ++ D+L +I G
Sbjct: 121 PSLFQSPTRLVGASAAIRALLIFLCAYMPSMDVKFFTFNFKLWYIGAAIVAFDVLGVITG 180
Query: 262 -----NSNISGS-AHLGGAAVAAL 279
N N G+ AHLGGA + L
Sbjct: 181 INDPINGNAGGNLAHLGGAILGYL 204
>gi|283457105|ref|YP_003361668.1| membrane protein [Rothia mucilaginosa DY-18]
gi|283133083|dbj|BAI63848.1| uncharacterized membrane protein [Rothia mucilaginosa DY-18]
Length = 188
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 14/157 (8%)
Query: 137 VFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHI--DVEHIVSNMIGLYFFGMS 194
++ L +I ++M N+ + G + LI+ F H D H+V NMI L+ FG+S
Sbjct: 1 MYGLQQIIPNRWMVNHGMMWWPYVQHGEYYRLISYGFLHSQNDPMHLVWNMIYLFIFGVS 60
Query: 195 IGRTLGPEYLLKLYMAGAIGG--SVFYLVYH-AFLAMSSKRQGMW--------VVDPSRT 243
+ R +G L +YMA +G SV+ Y+ + S G++ + T
Sbjct: 61 LERMMGRWKFLFVYMAATVGAGLSVYIFAYYRGAVGASGGVYGLYGAFFVILLLRRQKDT 120
Query: 244 PALGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALA 280
L + LIG +++ + +IS + H GG ALA
Sbjct: 121 ARLFILLIGIGVVQNLF-TPHISHAGHFGGLVSGALA 156
>gi|156096394|ref|XP_001614231.1| hypothetical protein [Plasmodium vivax Sal-1]
gi|148803105|gb|EDL44504.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 557
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 131 IIANTAVFMLWRIADP-------KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVS 183
+ AN VF+ WR+++ +FM NF S +N HT+ T+ SHI + H +
Sbjct: 262 LFANGVVFLCWRLSEIAGNKKFFRFMCRNFICSYENVRRKYYHTIFTATISHITLPHFLF 321
Query: 184 NM 185
NM
Sbjct: 322 NM 323
>gi|402489966|ref|ZP_10836759.1| rhomboid family protein [Rhizobium sp. CCGE 510]
gi|401811305|gb|EJT03674.1| rhomboid family protein [Rhizobium sp. CCGE 510]
Length = 261
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 84/207 (40%), Gaps = 49/207 (23%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISL---------DNFLSGRLH------TLIT 170
V GLI N AV++L + + A T+ L D L+ L T +T
Sbjct: 19 VTLGLIALNIAVWLLTSLESEQ-AAQATTVGLGYIPAIAFGDAVLAQGLEIVPEPLTYLT 77
Query: 171 SAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSS 230
AF H H+ SNMI L+ FG ++ +G L Y+ A G+ + H LAM+S
Sbjct: 78 YAFVHSGFWHLASNMIFLWVFGDNVEDAMGHLRFLIFYVVCAAAGA----LCHGLLAMAS 133
Query: 231 K----------------------RQGMWVVD----PSRTPALGVFL--IGKDMLRI-IEG 261
+ R +WV+ P PA L IG+ L + I
Sbjct: 134 QAALVGASGAISGVVAAYVMLHPRVKVWVLVFFRLPLPLPAFIPLLLWIGQQFLMLAIAP 193
Query: 262 NSNISGSAHLGGAAVAALAWARIRRRG 288
+ ++S AH+GG AL +RR G
Sbjct: 194 DGDVSWGAHVGGILAGALLILVLRRPG 220
>gi|418324201|ref|ZP_12935451.1| peptidase, S54 family [Staphylococcus pettenkoferi VCU012]
gi|365227449|gb|EHM68645.1| peptidase, S54 family [Staphylococcus pettenkoferi VCU012]
Length = 479
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 126 VVYGLIIANTAVFM-----LWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEH 180
+ Y LI N +++ L R +D K + + NF+ G + LITS F H + EH
Sbjct: 158 ITYSLIAINVFIWLIMFLVLDRFSDFKLLDVGGLVHF-NFVHGEWYRLITSMFLHFNFEH 216
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS 216
++ NM+ L+ FG + +G +L +Y+ + G+
Sbjct: 217 LLMNMLSLFIFGKIVESIVGHWRMLVIYLFAGLFGN 252
>gi|343426149|emb|CBQ69680.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 464
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADPK--------FMANNFTISLDNFLSGRLHTLITSAFS 174
+ +VV +I NTAVF LW IA + +M NF + S R HTL+TS +S
Sbjct: 223 AKQVVVPVIAVNTAVFALWTIASRRGGAGGMWRWMTRNF---VHRPSSARTHTLLTSVYS 279
Query: 175 HIDVEHIVSNMIGLYFFGMS 194
H H + N + L+ G S
Sbjct: 280 HQTFVHYLFNNMALWSIGGS 299
>gi|375148562|ref|YP_005011003.1| rhomboid family protein [Niastella koreensis GR20-10]
gi|361062608|gb|AEW01600.1| Rhomboid family protein [Niastella koreensis GR20-10]
Length = 275
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 16/129 (12%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV------ 221
L+TS F H++ H++ NM+G+YFF + L L +Y A +GG++ L+
Sbjct: 50 LVTSGFLHVNWMHLIFNMLGVYFFAGLLIAQLDWYGFLLVYFASMVGGNLLSLIIYKNQG 109
Query: 222 -YHAFLAMSSKRQGMW---VVDPSR----TPA--LGVFLIGKDMLRIIEGNSNISGSAHL 271
Y + A + G++ +DP P G+ IG + + N+ AHL
Sbjct: 110 DYTSVGASGAVNGGIFATIALDPGIRIFFLPGWLFGLLYIGLTIYGVRSKRDNVGHEAHL 169
Query: 272 GGAAVAALA 280
GGA + +
Sbjct: 170 GGALIGMVV 178
>gi|314933721|ref|ZP_07841086.1| rhomboid family protein [Staphylococcus caprae C87]
gi|313653871|gb|EFS17628.1| rhomboid family protein [Staphylococcus caprae C87]
Length = 487
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 128 YGLIIANTAVFM-----LWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIV 182
Y LII N +++ L R +D K + + N + G + LI+S F H + EHI+
Sbjct: 161 YVLIITNVIIWLCMILYLNRFSDVKLLEVGGLVHF-NVVHGEWYRLISSMFLHFNFEHIL 219
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS 216
NM+ L+ FG + +G +L +Y + G+
Sbjct: 220 MNMLSLFIFGKIVESIVGSWRMLVIYFVSGLFGN 253
>gi|222099054|ref|YP_002533622.1| Rhomboid family protein precursor [Thermotoga neapolitana DSM 4359]
gi|221571444|gb|ACM22256.1| Rhomboid family protein precursor [Thermotoga neapolitana DSM 4359]
Length = 236
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 16/128 (12%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPE-YLLKLYMAGAIGGSVFYL 220
+G LIT+ F H + HI+ N LY+FG+ + G E +L + G +G ++
Sbjct: 52 AGDWFRLITALFVHGGILHILFNSYALYYFGLIVEDIYGSEKFLFSYFFTGVVGNIATHI 111
Query: 221 VYHAFLAMSSKRQ-----GMWVVDPSR-------TPALGVFLIGKDMLRIIEG---NSNI 265
YH +++ + G+ R P GV L+ ++ ++ G +NI
Sbjct: 112 FYHDTISVGASGAIFGLIGVLFAAGFRKDTPFFMKPVTGVSLLPIILINVVYGFLPGTNI 171
Query: 266 SGSAHLGG 273
+ +AHLGG
Sbjct: 172 NNAAHLGG 179
>gi|282880538|ref|ZP_06289245.1| peptidase, S54 (rhomboid) family protein [Prevotella timonensis
CRIS 5C-B1]
gi|281305641|gb|EFA97694.1| peptidase, S54 (rhomboid) family protein [Prevotella timonensis
CRIS 5C-B1]
Length = 305
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%)
Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
R++ L T F H EH+ NM L+ FG + R GP+ L Y+ +G +F
Sbjct: 46 RIYQLFTYMFMHASFEHLFFNMFALWMFGCVVERVWGPKKFLFFYLTCGVGAGLF 100
>gi|427724622|ref|YP_007071899.1| rhomboid family protein [Leptolyngbya sp. PCC 7376]
gi|427356342|gb|AFY39065.1| Rhomboid family protein [Leptolyngbya sp. PCC 7376]
Length = 556
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
++G +IT+ F HID H+++N++ LY G + R LG L +Y+A +G +
Sbjct: 376 EVINGEWWRIITATFIHIDWGHLLTNILTLYLLGGFVERNLGKTRYLFIYIASGVGAMLM 435
Query: 219 YL 220
L
Sbjct: 436 LL 437
>gi|379014757|ref|YP_005290993.1| putative rhomboid family protein, truncated, partial
[Staphylococcus aureus subsp. aureus VC40]
gi|374363454|gb|AEZ37559.1| putative rhomboid family protein, truncated [Staphylococcus aureus
subsp. aureus VC40]
Length = 423
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
N + G + ++TS F H EHI+ NM+ L+ FG + +G +L +Y + G+
Sbjct: 196 NVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFV 255
Query: 219 YLVYHA-----------FLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG----NS 263
L ++ F + S M+V LG LI L I+ G S
Sbjct: 256 SLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIA---LVILVGVSLFMS 312
Query: 264 NISGSAHLGG 273
NI+ AH+GG
Sbjct: 313 NINIVAHIGG 322
>gi|449117125|ref|ZP_21753569.1| hypothetical protein HMPREF9726_01554 [Treponema denticola H-22]
gi|448952389|gb|EMB33193.1| hypothetical protein HMPREF9726_01554 [Treponema denticola H-22]
Length = 209
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 58/141 (41%), Gaps = 26/141 (18%)
Query: 170 TSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIGGSVFYLVYHA---- 224
T F H D H+ NM+ L+FFG+ + +G E++L + G IGG + +LVY A
Sbjct: 58 TYQFVHGDFFHLAFNMLALFFFGVPVECKIGTKEFILYYLLIGTIGGILSFLVYAATGFY 117
Query: 225 ---FLAMSSKRQG---------------MWVVDPSRTPALGVFLIGKDMLRIIEGNSNIS 266
+ S G +W V P P L ++G ++ +I S
Sbjct: 118 TITLIGASGAIFGVLLLYAVLYPNSVIYIWGVIPVPAPLL---ILGYAVIELISIFSIGD 174
Query: 267 GSAHLGGAAVAALAWARIRRR 287
G AHL W IR R
Sbjct: 175 GVAHLTHFIGLIAGWVYIRIR 195
>gi|392972219|ref|ZP_10337611.1| rhomboid family protein [Staphylococcus equorum subsp. equorum Mu2]
gi|392509932|emb|CCI60913.1| rhomboid family protein [Staphylococcus equorum subsp. equorum Mu2]
Length = 391
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 124 SEVVYGLIIANTAVFM-----LWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDV 178
S V Y LI N +++ L R +D K + + N + G + LI+S F H D
Sbjct: 62 SPVTYTLIAVNIIIWLAMVLFLNRFSDLKMLDVGGLVHF-NVVHGEWYRLISSIFLHYDF 120
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS 216
EHI+ NM+ L+ FG + +G ++ +Y+ + G+
Sbjct: 121 EHILMNMLSLFIFGKIVESIVGHWRMIVIYIVAGLFGN 158
>gi|223043140|ref|ZP_03613187.1| rhomboid family protein [Staphylococcus capitis SK14]
gi|417907800|ref|ZP_12551567.1| peptidase, S54 family [Staphylococcus capitis VCU116]
gi|222443351|gb|EEE49449.1| rhomboid family protein [Staphylococcus capitis SK14]
gi|341594887|gb|EGS37565.1| peptidase, S54 family [Staphylococcus capitis VCU116]
Length = 487
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 128 YGLIIANTAVFM-----LWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIV 182
Y LII N +++ L R +D K + + N + G + LI+S F H + EHI+
Sbjct: 161 YVLIITNVIIWLCMILYLNRFSDVKLLEVGGLVHF-NVVHGEWYRLISSMFLHFNFEHIL 219
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS 216
NM+ L+ FG + +G +L +Y + G+
Sbjct: 220 MNMLSLFIFGKIVESIVGSWRMLVIYFVSGLFGN 253
>gi|167565767|ref|ZP_02358683.1| serine protease, rhomboid family protein [Burkholderia oklahomensis
EO147]
Length = 201
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 28/148 (18%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY----- 222
++T + H + H++ NM+GL FG + R+LG LY+A + G++ LV
Sbjct: 50 IVTYSALHAGLSHLIFNMLGLVMFGRDVERSLGRARFGTLYLASVVCGALTQLVVARYTA 109
Query: 223 -----------------HAFLAMSSKRQGMWVVDPSRTPALGVFLI--GKDMLRIIEG-N 262
A+ + R+ + + P PA L+ G ++L + G
Sbjct: 110 TGGAPTIGASAGVFGVLAAYALLYPSRRVVLLFPPIPMPAWVFALVYAGVELLLGVAGAA 169
Query: 263 SNISGSAHLG---GAAVAALAWARIRRR 287
S I+ AHLG GA V L WAR RR
Sbjct: 170 SGIAHFAHLGGMFGALVLVLFWARPRRE 197
>gi|399526757|ref|ZP_10766509.1| peptidase, S54 family [Actinomyces sp. ICM39]
gi|398362686|gb|EJN46363.1| peptidase, S54 family [Actinomyces sp. ICM39]
Length = 290
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 115 RSWLRQ------YGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISL---DNFLSGRL 165
+ W+R G+ V Y ++ +++L ++A T +L +L
Sbjct: 57 KQWMRSPSRAAAAGAPVVTYAMMTTCVLMYVL------TWLAPALTSALALVPAWLMAHP 110
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
T++T AF H + HI+ NM+ LY+ G +I +G L +Y+ A+GGS F + +
Sbjct: 111 WTILTGAFLHGGLLHILFNMLSLYWVGRAIEPVMGWWRFLTVYLVSALGGSAFIIAW 167
>gi|430745812|ref|YP_007204941.1| hypothetical protein Sinac_5094 [Singulisphaera acidiphila DSM
18658]
gi|430017532|gb|AGA29246.1| putative membrane protein [Singulisphaera acidiphila DSM 18658]
Length = 306
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 73/182 (40%), Gaps = 24/182 (13%)
Query: 122 GSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDN-FLSGRLHTLITSAFSHIDVEH 180
G + +I+ N VF L I + + N F S D F G + L+T+ F H V H
Sbjct: 21 GLAPATKAIIVINVIVFFLQPILQDRGLWNYFIASSDGIFRHGYVWQLLTATFMHAGVYH 80
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQG------ 234
++ NM+ L+ G + G + Y+ A+ ++ ++ FL G
Sbjct: 81 LLWNMVFLWMVGREMESFYGTRDFVAFYLCAAVLSTLGWVAIDTFLGHHGNMLGASGAIM 140
Query: 235 ----------------MWVVDPSRTPALGVFLIGKDMLRII-EGNSNISGSAHLGGAAVA 277
++ V P + L V + D +++ + S I+ ++HL GAA
Sbjct: 141 AVVVVYAMYYPHREILLFFVLPVQMWLLVVIYLAHDAYQLLTQPASEIAVASHLSGAAFG 200
Query: 278 AL 279
L
Sbjct: 201 YL 202
>gi|379021331|ref|YP_005297993.1| putative membrane peptidase, contains TPRrepeat domain
[Staphylococcus aureus subsp. aureus M013]
gi|418562599|ref|ZP_13127056.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21262]
gi|359830640|gb|AEV78618.1| Putative membrane peptidase, contains TPRrepeat domain
[Staphylococcus aureus subsp. aureus M013]
gi|371973703|gb|EHO91051.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21262]
Length = 487
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
N + G + ++TS F H EHI+ NM+ L+ FG + +G +L +Y + G+
Sbjct: 196 NVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFV 255
Query: 219 YLVYHA-----------FLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG----NS 263
L ++ F + S M+V LG LI L I+ G S
Sbjct: 256 SLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIS---LVILVGVSLFMS 312
Query: 264 NISGSAHLGG 273
NI+ AH+GG
Sbjct: 313 NINIVAHIGG 322
>gi|163787899|ref|ZP_02182345.1| putative transmembrane rhomboid family protein [Flavobacteriales
bacterium ALC-1]
gi|159876219|gb|EDP70277.1| putative transmembrane rhomboid family protein [Flavobacteriales
bacterium ALC-1]
Length = 297
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLD--NFLSGRLHTLITSAFSHIDVEHIVS 183
+V+ +I A++ L+ F N + D FL+ R T+ T F+H H+
Sbjct: 29 LVFAVISITNALYFLFTDQHLTFFYNYIALPEDVSKFLT-RPWTIFTYFFTHFGFRHLFY 87
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAI-GGSVFYLVYHAFLAMSSKR 232
N+IGLYFFG + +K Y+ G I G +F + Y+ F A+ +K+
Sbjct: 88 NIIGLYFFGRIFMTFYDSKQFIKHYLLGGIFAGFIFIISYNIFPALINKQ 137
>gi|260062828|ref|YP_003195908.1| hypothetical protein RB2501_14599 [Robiginitalea biformata
HTCC2501]
gi|88784396|gb|EAR15566.1| hypothetical protein RB2501_14599 [Robiginitalea biformata
HTCC2501]
Length = 215
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
+G+ ITS F H+DV H+ NM LYFF + GP L Y+ + GS+ +
Sbjct: 40 AGQRERTITSGFLHVDVAHLFVNMFTLYFFADVVIDWFGPSRFLITYLVSLLAGSLLAMY 99
Query: 222 YH 223
+H
Sbjct: 100 FH 101
>gi|343496237|ref|ZP_08734340.1| rhomboid family protein [Vibrio nigripulchritudo ATCC 27043]
gi|342821484|gb|EGU56258.1| rhomboid family protein [Vibrio nigripulchritudo ATCC 27043]
Length = 360
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 84/205 (40%), Gaps = 42/205 (20%)
Query: 98 FRAQFP-ERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIA--DPKFMANNFT 154
F Q P E + W +W+ +I N +F L+ + ++ +
Sbjct: 135 FLTQMPVEYNLKPKTTPWCNWI-----------IIALNCIIFSLYAFSYETTDWVIEHLA 183
Query: 155 ISLDNFLSGR-LHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYM---- 209
++ + L+GR L TL+T+ F H D+ H+ NM LY G +I +G + L LY
Sbjct: 184 MTPADILAGRELWTLVTATFLHGDLMHLAGNMYFLYVVGDNIEDAVGHKKYLALYFFCGI 243
Query: 210 --------------------AGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPAL-GV 248
+GAI G F+ +Y + +S + V +P L +
Sbjct: 244 AASLVSFFSNMHGLIPSVGASGAIAG--FFAIYLLWFRHASLTFMIVVFQKKISPVLFFI 301
Query: 249 FLIGKDMLRIIEGNSNISGSAHLGG 273
+G ++ +I N + +AHLGG
Sbjct: 302 IWLGFNLFGMIMANQGVDYAAHLGG 326
>gi|390955218|ref|YP_006418976.1| hypothetical protein Aeqsu_2504 [Aequorivita sublithincola DSM
14238]
gi|390421204|gb|AFL81961.1| putative membrane protein [Aequorivita sublithincola DSM 14238]
Length = 291
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 120 QYGSSEVVYGLIIANTAVFMLWRIA------DPKFMANNFTISLD-NFLSGRLHTLITSA 172
+Y ++ V+ LII N A F++ R+ P + F +S D + L R TLIT
Sbjct: 9 KYKTASVLVKLIILNAAAFLVVRLGAFFLSITPFNFSRWFVLSDDFDTLLFRPWTLITYG 68
Query: 173 FSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLY 208
F H D HI+ NM+ LY+FG + + LL +Y
Sbjct: 69 FLHYDFFHILFNMLWLYWFGQFVLNLFNGKRLLTVY 104
>gi|255726324|ref|XP_002548088.1| hypothetical protein CTRG_02385 [Candida tropicalis MYA-3404]
gi|240134012|gb|EER33567.1| hypothetical protein CTRG_02385 [Candida tropicalis MYA-3404]
Length = 327
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISL-DNFLSGRLHTLITSAFSHIDVEHIVS 183
+++ +I N AVF++WRI ++ + I DN S +L+ SAFSH + H
Sbjct: 127 ALLWSIIGINGAVFLMWRIPRFQWFTMKYGILFKDNIQSS--WSLLGSAFSHQNFFHFFV 184
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMS 229
NM+ L FG ++ LG +Y+ A+ S L FL S
Sbjct: 185 NMLALQSFGSTLIAYLGVSNFTTMYLNSAVISSFASLAIPTFLGSS 230
>gi|225165485|ref|ZP_03727311.1| rhomboid family protein [Diplosphaera colitermitum TAV2]
gi|224800262|gb|EEG18666.1| rhomboid family protein [Diplosphaera colitermitum TAV2]
Length = 300
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 149 MANNFTISLDNF--LSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLK 206
+ N+F LD F GR+ TL+T A H + HI +N I L+F G + LGP +L
Sbjct: 46 LINDFA-ELDIFSLKHGRVWTLLTYALLHASLFHIFANSIALFFTGRILEPILGPRRILW 104
Query: 207 LYMAGAIGGSVFYL 220
L A +GGS+ ++
Sbjct: 105 LLGASILGGSLLWV 118
>gi|154491893|ref|ZP_02031519.1| hypothetical protein PARMER_01520 [Parabacteroides merdae ATCC
43184]
gi|423724338|ref|ZP_17698483.1| hypothetical protein HMPREF1078_02382 [Parabacteroides merdae
CL09T00C40]
gi|154088134|gb|EDN87179.1| peptidase, S54 family [Parabacteroides merdae ATCC 43184]
gi|409237319|gb|EKN30118.1| hypothetical protein HMPREF1078_02382 [Parabacteroides merdae
CL09T00C40]
Length = 292
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 84/206 (40%), Gaps = 39/206 (18%)
Query: 119 RQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNF----------TISLDNFLSGRLHTL 168
R + S ++ LI N +F++ R+A M N S L R T+
Sbjct: 10 RTFNSGNILAKLIYINVGLFVIIRLASVILMLFNLGGFPFLQYLQVPSSPELLLYRPWTI 69
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV-YHAF-- 225
IT F+H D HI+ NM+ LY+FG L LY+ G I G+V +LV Y+ F
Sbjct: 70 ITYMFTHFDFLHILFNMLWLYWFGGLFLTFFSERQLGGLYLLGGIAGAVLFLVAYNIFPY 129
Query: 226 --------LAMSSKRQGMWVVDP----SRTPALGVFLIGK-------------DMLRIIE 260
M + M +V + +G+FLIG+ D+L I
Sbjct: 130 FRTVAAYSYLMGASASVMAIVFAVSFYRKDLEIGLFLIGRIKLIYLALFTFVIDLLAITS 189
Query: 261 GNSNISGSAHLGGAAVAALAWARIRR 286
N+ AH+GGA ARI+
Sbjct: 190 TNAG-GHIAHIGGALFGIWFAARIKE 214
>gi|117927224|ref|YP_871775.1| rhomboid family protein [Acidothermus cellulolyticus 11B]
gi|117647687|gb|ABK51789.1| Rhomboid family protein [Acidothermus cellulolyticus 11B]
Length = 287
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 43/101 (42%), Gaps = 9/101 (8%)
Query: 124 SEVVYGLIIANTAVFMLWRIADPKFM--------ANNFTISLDNFLSGRLHTLITSAFSH 175
+ V Y LI N VF+L +++ P+F F G + LIT+ F H
Sbjct: 75 TAVTYLLIAINAVVFLLEQVS-PRFELRYALIPGETGFAHPYAGVAGGEFYRLITAMFLH 133
Query: 176 IDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS 216
V HIV NM L G + LG L LY +GGS
Sbjct: 134 ASVLHIVFNMWALLVVGAPLEALLGRLRFLVLYFLAGLGGS 174
>gi|68063615|ref|XP_673803.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56491916|emb|CAI02436.1| hypothetical protein PB300746.00.0 [Plasmodium berghei]
Length = 333
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 131 IIANTAVFMLWRIADP-------KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVS 183
+IAN +F+ WR++D FM +F S +N HT+ T++ SH+ + H +
Sbjct: 40 LIANGVIFLCWRLSDIARNQKFYNFMCRHFICSYENIKKKHYHTIFTASISHMTLPHFLF 99
Query: 184 NM 185
NM
Sbjct: 100 NM 101
>gi|223936200|ref|ZP_03628113.1| Rhomboid family protein [bacterium Ellin514]
gi|223895062|gb|EEF61510.1| Rhomboid family protein [bacterium Ellin514]
Length = 287
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 117 WLRQYGSSEVVYGLIIANTAVFMLWRIADPK-FMANNF--TISLDNFLSGRLHTLITSAF 173
W Q+ + V LII N +F++ P+ F + +SLD G + L+T F
Sbjct: 7 WEPQWSVTVV---LIILNVVMFVVQNTVGPRDFYDLQYYGVLSLDGLKHGFIWQLLTFQF 63
Query: 174 SHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLK 206
H HI+ NM+ LYFFG ++ LG LK
Sbjct: 64 LHQGFFHILGNMLTLYFFGHAVEEALGKTSFLK 96
>gi|386716797|ref|YP_006183123.1| hypothetical protein SMD_0352 [Stenotrophomonas maltophilia D457]
gi|384076359|emb|CCH10940.1| hypothetical protein SMD_0352 [Stenotrophomonas maltophilia D457]
Length = 230
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 145 DPKFMANNFTISLD---NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP 201
D ++ T LD G + L T+ F H D H++ N++ L FG+ R LGP
Sbjct: 45 DWGALSTGLTRPLDWWATLQDGSVLRLFTALFLHADWSHLLGNLVFLLIFGLPAERVLGP 104
Query: 202 EYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQ 233
LL L++ +GG+V LV A M S Q
Sbjct: 105 WRLLLLFL---VGGAVSNLV--AIYTMGSPDQ 131
>gi|378727658|gb|EHY54117.1| rhomboid-like protein [Exophiala dermatitidis NIH/UT8656]
Length = 567
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 76/187 (40%), Gaps = 14/187 (7%)
Query: 38 RPLSSFSKHPFHPTFSWRSQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSFFDGKVLF 97
RP +SF K R+Q L+L++ L R F + LL S L + + +
Sbjct: 280 RPPNSFEKWVLKAQN--RAQSKLTLESPEVTQKTLFQRLFPSFLLVSVLCGASYLYSQYW 337
Query: 98 FRAQFPERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISL 157
R + +R F S + L+ N A+F WR+ N + I
Sbjct: 338 TRPRHADRFFPDVSL----------SVATIGTLVALNVAIFAAWRMPPLWNSLNKYFIIA 387
Query: 158 DNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
+ +++ S FSH H+++NM+ L FG+ + +G + +Y+ + GS
Sbjct: 388 PAYPYA--FSMLGSLFSHQKFTHLLANMLTLVLFGLPLHEEVGRGTFVAIYLCSGLIGSF 445
Query: 218 FYLVYHA 224
L HA
Sbjct: 446 ASLARHA 452
>gi|326434218|gb|EGD79788.1| hypothetical protein PTSG_10773 [Salpingoeca sp. ATCC 50818]
Length = 148
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 35/59 (59%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
++TS+FSH + H + NM + FGM + +G L+LY+A A+ ++ ++ Y+ L
Sbjct: 1 MVTSSFSHASMSHFLINMFVFFSFGMPVAAVMGQLPFLRLYLAAAVSTALAHIGYYTIL 59
>gi|300697598|ref|YP_003748259.1| putative peptidase S54, rhomboid family [Ralstonia solanacearum
CFBP2957]
gi|299074322|emb|CBJ53869.1| putative peptidase S54, rhomboid family [Ralstonia solanacearum
CFBP2957]
Length = 197
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 66/148 (44%), Gaps = 30/148 (20%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMA----------------- 210
L+T AF H V H+V NM G++ FG + RTLG LY+A
Sbjct: 48 LLTYAFLHASVPHLVFNMFGMFMFGRDVERTLGGVRTGVLYVASVLSAAFTQIAVMGLST 107
Query: 211 -------GAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPA---LGVFLIGKDMLRIIE 260
GA GG VF L+ A+ + +R + + P PA V+ + + L +
Sbjct: 108 VPAGPIVGASGG-VFGLLL-AYAVLFPRRMILLLFPPIPMPAWLFATVYALIELTLGLSG 165
Query: 261 GNSNISGSAHLGG-AAVAALAWARIRRR 287
+NI+ AHLGG A L W +RRR
Sbjct: 166 RAANIAHFAHLGGMAGSGVLLWRWLRRR 193
>gi|260439384|ref|ZP_05793200.1| rhomboid family protein [Butyrivibrio crossotus DSM 2876]
gi|292808180|gb|EFF67385.1| rhomboid family protein [Butyrivibrio crossotus DSM 2876]
Length = 337
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 53/107 (49%), Gaps = 9/107 (8%)
Query: 124 SEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRL-------HTLITSAFSHI 176
S V + LI AN V+++ +A N F ++ L + + L TS F H
Sbjct: 147 SVVNFALIAANIIVYII--VASGGNTYNGFYLATKGGLVAKYVIDYKEYYRLFTSMFLHA 204
Query: 177 DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
V+H+ SNMI L F G +I R +G +Y+AG + SV L+Y+
Sbjct: 205 GVQHLASNMIMLLFVGDTIERIVGHVRYAIIYLAGGLFASVGTLLYY 251
>gi|406953471|gb|EKD82714.1| hypothetical protein ACD_39C01138G0001, partial [uncultured
bacterium]
Length = 386
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 10/108 (9%)
Query: 127 VYGLIIANTAVFM-LWRIADPKFMA--NNFTISLDNFLSGRLHTLITSAFSHIDVEHIVS 183
+Y LI+ N A+++ + KFM F + L+G+LHTL+TS F H + H+ +
Sbjct: 203 MYLLIMLNIAIYIHTGSLVPDKFMPFMREFGAVPLDVLAGKLHTLVTSIFLHSNFWHLFA 262
Query: 184 NMIGLYFFGMSI-------GRTLGPEYLLKLYMAGAIGGSVFYLVYHA 224
NM L+ FG ++ G+T GP + Y+ + + +++ A
Sbjct: 263 NMYVLFVFGDNVYDLFNDHGKTRGPLTFVVFYLIVGVLSGLIHIILAA 310
>gi|404260618|ref|ZP_10963899.1| hypothetical protein GONAM_52_00550 [Gordonia namibiensis NBRC
108229]
gi|403400926|dbj|GAC02309.1| hypothetical protein GONAM_52_00550 [Gordonia namibiensis NBRC
108229]
Length = 241
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 11/122 (9%)
Query: 122 GSSEVVYGLIIANTAVFMLWRI-----ADPK----FMANNFTISLDNFLSGRLHTLITSA 172
G V Y LI N +F+L + DP F + + S + +G L+TS
Sbjct: 12 GKPYVTYTLIGINILIFLLCAVQAGSFGDPGAATIFSSGDLLKS--DVAAGEYWRLLTSG 69
Query: 173 FSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKR 232
F H V H+ NM+ LY G + LG L +Y+ +GGS +++ A+++
Sbjct: 70 FLHFSVMHVAVNMLSLYILGRDLELALGMSRYLAVYLIALLGGSAAVMLFENDRALTAGA 129
Query: 233 QG 234
G
Sbjct: 130 SG 131
>gi|421276262|ref|ZP_15727085.1| hypothetical protein SPAR10_0144 [Streptococcus mitis SPAR10]
gi|395878215|gb|EJG89282.1| hypothetical protein SPAR10_0144 [Streptococcus mitis SPAR10]
Length = 224
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 64/136 (47%), Gaps = 17/136 (12%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY--HAF 225
L ++ F HI +EH + NM+ LYF G + G + +Y+ + G++F LV+ +A
Sbjct: 61 LFSATFVHIGLEHFLVNMLSLYFLGRQMEDIFGSKQFFFIYLLSGMMGNLFVLVFSPNAI 120
Query: 226 LA-MSSKRQGMW---VV--DPSRTPALGVFLIGKDMLRIIEGN-------SNISGSAHLG 272
A S+ GM+ VV SR P L +G+ L ++ N IS + HLG
Sbjct: 121 TAGASTALYGMFASIVVLRYASRNPYLQQ--LGQSYLSLLVINLVGSVLIPGISLAGHLG 178
Query: 273 GAAVAALAWARIRRRG 288
GA AL RG
Sbjct: 179 GAVGGALLAIVFPVRG 194
>gi|346474066|gb|AEO36877.1| hypothetical protein [Amblyomma maculatum]
Length = 310
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 61/155 (39%), Gaps = 33/155 (21%)
Query: 89 SFFDGKVL-FFRAQFPERSFASFRYRWRS------------WLRQYGSSEVVYGLIIANT 135
SF V + R + RS S R+ W W S V Y LI N
Sbjct: 54 SFLGAAVWQYERMRREARSIVSQRWTWEPKRGRFRQQVHTWWQSVPEGSRVAYVLIATNV 113
Query: 136 AVFMLWRIA--DPKFMANNFT-------ISLDNFLSGRLHTLITSAFSHIDVEHIVSNMI 186
AV +LWR+ +P FM F+ + L FLS FSH H+ +NM+
Sbjct: 114 AVCLLWRVPRLEP-FMVRYFSSHPASKSVCLPMFLS---------TFSHHSFLHLAANMV 163
Query: 187 GLYFFGMSIGRTLGPEYLLKLYM-AGAIGGSVFYL 220
L F + LG E + +Y+ AG I YL
Sbjct: 164 VLNSFAPTAVAILGREQFVAMYLSAGVISSLASYL 198
>gi|311748628|ref|ZP_07722413.1| rhomboid family protein [Algoriphagus sp. PR1]
gi|126577154|gb|EAZ81402.1| rhomboid family protein [Algoriphagus sp. PR1]
Length = 263
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 124 SEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVS 183
+ VV L++ N ++++ P+ + + F + N + +T F H H+ S
Sbjct: 6 TPVVQNLLLINVVMYLVSAFLFPQ-LGDLFALYYINSPYFQPFQFLTYMFMHAGFWHLFS 64
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
NM GL FG + + LGP+ LL L+M +G V Y Y ++
Sbjct: 65 NMFGLLIFGPLLEQFLGPKKLLILWMVCGVGSGVLYSGYTSY 106
>gi|88803472|ref|ZP_01118998.1| putative integral membrane protein [Polaribacter irgensii 23-P]
gi|88781038|gb|EAR12217.1| putative integral membrane protein [Polaribacter irgensii 23-P]
Length = 218
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 124 SEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVS 183
++ V +IIAN V M + D F+ + + +SG L+TS F H+D H+
Sbjct: 6 NQAVLLIIIANVLVSM-KGLKDSAFL-EKYKFQIGRIISGEKIRLLTSGFLHVDYMHLGF 63
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
NM LY FG + +G L +Y + G+++ L YH
Sbjct: 64 NMYALYLFGDIVSGMMGIFNFLIIYFISLLAGNLYTLKYH 103
>gi|328770837|gb|EGF80878.1| hypothetical protein BATDEDRAFT_11066 [Batrachochytrium
dendrobatidis JAM81]
Length = 220
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 10/99 (10%)
Query: 127 VYGLIIANTAVFMLWRIAD-PKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM 185
+ LI N AVF LWR+ FM NF + + S R++T++TSAFS V H+ NM
Sbjct: 8 TWTLIACNLAVFFLWRLPPLGHFMNRNF---VHHSHSRRIYTMVTSAFSQKGVAHLAFNM 64
Query: 186 IGL--YFFGMSIGRTLGPEYLLKLYMAGA----IGGSVF 218
L +F M + + + Y++ A +G VF
Sbjct: 65 FALNSFFISMHYLHPMTHQEAIAFYLSTAALSSLGSQVF 103
>gi|418906494|ref|ZP_13460520.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|418928899|ref|ZP_13482785.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1612]
gi|377738811|gb|EHT62820.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1612]
gi|377763399|gb|EHT87255.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC345D]
Length = 470
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
N + G + ++TS F H EHI+ NM+ L+ FG + +G +L +Y + G+
Sbjct: 179 NVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFV 238
Query: 219 YLVYHA-----------FLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG----NS 263
L ++ F + S M+V LG LI L I+ G S
Sbjct: 239 SLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIA---LVILVGVSLFMS 295
Query: 264 NISGSAHLGG 273
NI+ AH+GG
Sbjct: 296 NINIVAHIGG 305
>gi|284040402|ref|YP_003390332.1| rhomboid family protein [Spirosoma linguale DSM 74]
gi|283819695|gb|ADB41533.1| Rhomboid family protein [Spirosoma linguale DSM 74]
Length = 308
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 12/92 (13%)
Query: 130 LIIANTAVFMLWRIADPKF-MANN----FTISLDNFLSGRLH-------TLITSAFSHID 177
LI+ N +F++ + MA N F I+ + G +H TL T FSH +
Sbjct: 22 LILVNVVIFLVLLVTKVSLTMAENTGAYFFITSQLMVPGEIHAFLHKPWTLFTYFFSHEE 81
Query: 178 VEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYM 209
+ HI+ NM+ LY+FG I LG L+ LY+
Sbjct: 82 IFHILYNMLFLYWFGRLIDEYLGNRRLMGLYI 113
>gi|397690913|ref|YP_006528167.1| hypothetical protein MROS_1922 [Melioribacter roseus P3M]
gi|395812405|gb|AFN75154.1| Hypothetical protein MROS_1922 [Melioribacter roseus P3M]
Length = 306
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 30/62 (48%)
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAM 228
IT F H HI+ NM L+ FGM I +GP L Y+A IG +F ++ L
Sbjct: 82 ITYQFMHGSFTHILFNMFMLWMFGMEIANLMGPRKFLIFYLACGIGAGLFQILLSPLLGS 141
Query: 229 SS 230
S
Sbjct: 142 VS 143
>gi|262281800|ref|ZP_06059569.1| peptidase [Streptococcus sp. 2_1_36FAA]
gi|262262254|gb|EEY80951.1| peptidase [Streptococcus sp. 2_1_36FAA]
Length = 227
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%)
Query: 171 SAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
+ F HI +EH V NM+ LYF G I GP L LY+ + G++F
Sbjct: 64 AIFVHIGLEHFVVNMLTLYFLGRQIEDIFGPWKFLMLYLMSGVMGNLF 111
>gi|421898671|ref|ZP_16329037.1| uncharacterized membrane protein [Ralstonia solanacearum MolK2]
gi|206589877|emb|CAQ36838.1| uncharacterized membrane protein [Ralstonia solanacearum MolK2]
Length = 197
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 63/151 (41%), Gaps = 36/151 (23%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAI-------------- 213
L+T AF H V H+V NM G++ FG + RTLG LY+A +
Sbjct: 48 LLTYAFLHASVPHLVFNMFGMFMFGRDVERTLGRVRTGVLYVASVLSAAFTQIAVMGLST 107
Query: 214 ---------GGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEGNSN 264
G VF L+ A+ + +R + + P PA + + +IE
Sbjct: 108 VPAGPIVGASGGVFGLLL-AYAVLFPRRMILLLFPPIPMPA----WLFATVYALIELTLG 162
Query: 265 ISGS-------AHLGG-AAVAALAWARIRRR 287
+SGS AHLGG A L W +RRR
Sbjct: 163 LSGSAGHIAHFAHLGGMAGSGVLLWRWLRRR 193
>gi|442762601|gb|JAA73459.1| Putative integral membrane prote, partial [Ixodes ricinus]
Length = 342
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Query: 104 ERSFASFRYRWRSWLRQYGS-SEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLS 162
+ + +FR + W ++V Y +I N AVF++WR+ P+ N S
Sbjct: 114 DYKYGAFRQQLNQWYNGLSEGTKVAYAIIGVNVAVFLMWRV--PRLQPTMVRYFSSNPAS 171
Query: 163 GRLH-TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAI 213
+ ++ S FSH + H+ +NM+ L F + G E + +Y++ +
Sbjct: 172 RSVCLPMVLSTFSHSSLVHLCANMLVLTSFAPAAVALWGKEQFVAMYLSAGV 223
>gi|398808520|ref|ZP_10567383.1| putative membrane protein [Variovorax sp. CF313]
gi|398087552|gb|EJL78138.1| putative membrane protein [Variovorax sp. CF313]
Length = 471
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
T IT+AF H H++ NM+ L+ FG S+ LG L Y+ GA+G S
Sbjct: 135 TWITAAFLHGSTGHLLGNMLFLFLFGFSVELALGRGTYLSFYLLGAVGASAL 186
>gi|418931854|ref|ZP_13485689.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1750]
gi|377713032|gb|EHT37245.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1750]
Length = 470
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
N + G + ++TS F H EHI+ NM+ L+ FG + +G +L +Y + G+
Sbjct: 179 NVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFV 238
Query: 219 YLVYHA-----------FLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG----NS 263
L ++ F + S M+V LG LI L I+ G S
Sbjct: 239 SLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIA---LVILVGVSLFMS 295
Query: 264 NISGSAHLGG 273
NI+ AH+GG
Sbjct: 296 NINIVAHIGG 305
>gi|449512206|ref|XP_002192541.2| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like, partial [Taeniopygia guttata]
Length = 188
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 5/121 (4%)
Query: 82 LSSQLRKSFFDGKVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFML 140
L S+++ F + + + P++ FR + SW + V G+I AN VF L
Sbjct: 47 LKSRVQTYFEEARADWMDKMRPQKR-GDFRKQVNSWWNNLTEGQRTVTGIIAANVFVFCL 105
Query: 141 WRIADPKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTL 199
WR+ P FT N S L + ++ S FSH + H+ +NM L+ F SI L
Sbjct: 106 WRL--PGMRRIMFTYFTSNPSSRALCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVSLL 163
Query: 200 G 200
G
Sbjct: 164 G 164
>gi|68072603|ref|XP_678215.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56498611|emb|CAI00558.1| conserved hypothetical protein [Plasmodium berghei]
Length = 411
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 81/223 (36%), Gaps = 53/223 (23%)
Query: 118 LRQYGSSEVVYGLIIANTAVFMLWRIADPK-----------------------FMANNFT 154
+ Y S V Y LI + V+ LW A P+ FM F
Sbjct: 189 MHHYNKSPVTYSLIFLHFFVYFLWINAKPENMSYSYFSPAPTKSHSFPLLTSEFMYKYFC 248
Query: 155 ISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIG 214
SL + +L+TL+T+ SH ++ + N I L++ G S+ + + Y+ I
Sbjct: 249 CSLKSLREKQLYTLVTNIISHNTIQSFLLNTISLFYIGRSLEILINSKNFFFTYIVSGII 308
Query: 215 GSVFYLVYHAFLAMSSKRQGMWVVDPSRT------------PALGVFLIG---------- 252
S ++Y S + ++V+ S + P ++L G
Sbjct: 309 SSYIQILYQK--NSSYGYKNVYVLGASGSISSILATYTFIHPNHKIYLYGVLGLPLALFS 366
Query: 253 -----KDMLRIIEG-NSNISGSAHLGGAAVAALAWARIRRRGF 289
++ II N NI ++HL G + L + + F
Sbjct: 367 SFYFLNELYSIIANKNDNIGHASHLTGMFLGILYYYSYVNKKF 409
>gi|319954282|ref|YP_004165549.1| peptidase s54, rhomboid domain protein [Cellulophaga algicola DSM
14237]
gi|319422942|gb|ADV50051.1| Peptidase S54, rhomboid domain protein [Cellulophaga algicola DSM
14237]
Length = 288
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAI-GGSVFYLVYHAF 225
+++T AF H D HI NM+ LYF G G + +Y GAI GG +F L Y+ F
Sbjct: 62 SIVTYAFFHGDFGHIFWNMVMLYFTGRIFMNLFGERKFVNVYFLGAIFGGLLFILSYNIF 121
Query: 226 LAM----------SSKRQGMWVVDPSRTPA--------------LGVFLIGKDMLRIIEG 261
A+ S+ + + + TP +GV + D+ I G
Sbjct: 122 PALIGLNNSLIGASAAVMAVLIFVCTYTPNQEVRVILFNVKLWHVGVVFVLIDLF-FIGG 180
Query: 262 NSNISGS-AHLGGAAVA 277
NI G +HLGGA +
Sbjct: 181 GVNIGGRLSHLGGAFIG 197
>gi|124027302|ref|YP_001012622.1| uncharacterized membrane protein [Hyperthermus butylicus DSM 5456]
gi|123977996|gb|ABM80277.1| uncharacterized membrane protein [Hyperthermus butylicus DSM 5456]
Length = 477
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 14/82 (17%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
++T+ F+H ++ HI NM LY FG ++ +TLG L LY+ I +VF+ V+
Sbjct: 86 ILTAMFTHANLIHIFFNMYFLYLFGRAVEKTLGHWRYLALYLVSGIVAAVFHTVF----- 140
Query: 228 MSSKRQGMWVVDPS--RTPALG 247
M+VV+P+ P++G
Sbjct: 141 -------MYVVNPAGLAIPSVG 155
>gi|359727457|ref|ZP_09266153.1| intramembrane protease [Leptospira weilii str. 2006001855]
Length = 197
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
HTL+TS F H D H++ NMI Y FG ++ T+GP L Y+ + SV
Sbjct: 41 HTLLTSGFIHADWMHLIFNMISFYSFGKNLEMTVGPIKFLLFYLGTILITSV 92
>gi|381189363|ref|ZP_09896911.1| putative Rhomboid family protein [Flavobacterium frigoris PS1]
gi|379648572|gb|EIA07159.1| putative Rhomboid family protein [Flavobacterium frigoris PS1]
Length = 212
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 21/134 (15%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
SG +++S F H D+ H+ NM LYFF + LG + +Y I GS+ +V
Sbjct: 38 SGEQIRILSSGFLHADIAHLAFNMFTLYFFAPVVIDYLGEFLFVVVYFGSLIFGSLLTIV 97
Query: 222 YH---------------------AFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIE 260
+H A L G++ + P G+ + + +
Sbjct: 98 FHKDDYNYRAIGASGAVTGVLYSAILLRPDMMLGIFFIIPMPAYLFGILYLLYSIYGMKA 157
Query: 261 GNSNISGSAHLGGA 274
N NI +AH GGA
Sbjct: 158 KNDNIGHTAHFGGA 171
>gi|68076973|ref|XP_680406.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56501330|emb|CAH98054.1| conserved hypothetical protein [Plasmodium berghei]
Length = 491
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 131 IIANTAVFMLWRIADP-------KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVS 183
+IAN +F+ WR++D FM +F S +N HT+ T++ SH+ + H +
Sbjct: 198 LIANGVIFLCWRLSDIARNQKFYNFMCRHFICSYENIKKKHYHTIFTASISHMTLPHFLF 257
Query: 184 NM 185
NM
Sbjct: 258 NM 259
>gi|315605422|ref|ZP_07880463.1| rhomboid family protein [Actinomyces sp. oral taxon 180 str. F0310]
gi|315312877|gb|EFU60953.1| rhomboid family protein [Actinomyces sp. oral taxon 180 str. F0310]
Length = 256
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 62/136 (45%), Gaps = 19/136 (13%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL------ 220
T++T AF H + HI NM+ LY+ G +I LG L +Y+ A+GGS F +
Sbjct: 78 TILTGAFLHGGIMHIGFNMLTLYWVGRAIEPALGRWRYLTIYLVSALGGSAFVIAWCLIQ 137
Query: 221 ---VYHAFLAMSSKRQGMWV-------VDPSRTPALGVFLIGKDMLRIIEGNSNISGSAH 270
+Y + S G++ + S T ++ L+ I S IS AH
Sbjct: 138 PAQIYVGTVGASGAVFGLFGAVFVLQRLHGSDTTSIVALLVANLAYGFIA--SGISWQAH 195
Query: 271 LGGAAV-AALAWARIR 285
+GG V AA+ WA R
Sbjct: 196 IGGLVVGAAVTWAFAR 211
>gi|156053313|ref|XP_001592583.1| hypothetical protein SS1G_06824 [Sclerotinia sclerotiorum 1980]
gi|154704602|gb|EDO04341.1| hypothetical protein SS1G_06824 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 602
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLY 189
L++AN V LWR+ M N + I + + G +++ S FSH H + NM L
Sbjct: 398 LLVANAVVLFLWRVPPAWQMLNKYFIIIPAYPRG--LSMVGSVFSHQTFSHFLPNMAFLA 455
Query: 190 FFGMSIGRTLGPEYLLKLY 208
FG+ + +G L LY
Sbjct: 456 IFGVQLHDEIGRANFLALY 474
>gi|116668581|ref|YP_829514.1| rhomboid family protein [Arthrobacter sp. FB24]
gi|116608690|gb|ABK01414.1| Rhomboid family protein [Arthrobacter sp. FB24]
Length = 293
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 122 GSSEVVYGLIIANTAVFMLWRIADPKFMANNF-------TISLDNFLSGRLHTLITSAFS 174
G V +G+I V++L I + NF T F R+ +TSAF
Sbjct: 75 GRPLVTFGIIAVCALVYVLQWIVPNDGIYQNFAFATVYATPEYGVFEPWRM---LTSAFL 131
Query: 175 HID--VEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
H + HIV NM L+ FG ++ LG L LY+ A+GGSV YL+
Sbjct: 132 HSQGFILHIVLNMYMLWMFGQALEPLLGRIRFLALYLLAAVGGSVGYLL 180
>gi|417780433|ref|ZP_12428195.1| peptidase, S54 family [Leptospira weilii str. 2006001853]
gi|410779475|gb|EKR64091.1| peptidase, S54 family [Leptospira weilii str. 2006001853]
Length = 197
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
HTL+TS F H D H++ NMI Y FG ++ T+GP L Y+ + SV
Sbjct: 41 HTLLTSGFIHADWMHLIFNMISFYSFGKNLEMTVGPIKFLLFYLGTILITSV 92
>gi|295133592|ref|YP_003584268.1| rhomboid family protein [Zunongwangia profunda SM-A87]
gi|294981607|gb|ADF52072.1| rhomboid family protein [Zunongwangia profunda SM-A87]
Length = 215
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 145 DPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYL 204
DP+F + + ++ + SG+ + ++TS F H++ H+ NM+ LYFF ++ LG
Sbjct: 25 DPEFF-HKYKFNIADIKSGKKYQILTSGFLHVNHAHLFVNMLTLYFFADAVLHYLGTTGF 83
Query: 205 LKLYMAGAIGGSVFYLVYH 223
+ +Y+ + G++ L +H
Sbjct: 84 IVVYLVSLVLGNLLSLYFH 102
>gi|358068283|ref|ZP_09154750.1| hypothetical protein HMPREF9333_01631 [Johnsonella ignava ATCC
51276]
gi|356693542|gb|EHI55216.1| hypothetical protein HMPREF9333_01631 [Johnsonella ignava ATCC
51276]
Length = 206
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 25/131 (19%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
L+TS F H ++HI +NMI L+ G ++ R LG L Y+ IG ++ L +
Sbjct: 55 LLTSMFMHFGIDHIANNMIVLFMIGDNLERALGHVKYLIFYLICGIGANIVSLFFEMLTG 114
Query: 228 MSSKRQG------------MWVVDPSR-------TPALGVFLIGKDMLRIIEG--NSNIS 266
S G +W V +R + + +F++ L + G ++ +
Sbjct: 115 NYSVSAGASGAVFGVMGGLLWAVIANRGRLEELTSQRMAIFIV----LSLYYGFISTGVD 170
Query: 267 GSAHLGGAAVA 277
+AH+GGA +
Sbjct: 171 NAAHVGGAVIG 181
>gi|374327956|ref|YP_005086156.1| rhomboid family protein [Pyrobaculum sp. 1860]
gi|356643225|gb|AET33904.1| Rhomboid family protein [Pyrobaculum sp. 1860]
Length = 359
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 123 SSEVVYGLIIANTAVFML---WRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVE 179
S +V YGLII N VF++ +P + + ++N L+ ++ I S F+H V
Sbjct: 32 SPDVTYGLIIVNVIVFLVTLGMMFENPWAVGVTASEFVENPLNPKV---ILSMFAHAGVL 88
Query: 180 HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMA 210
HI+ NM+ LY +G ++ +G L YMA
Sbjct: 89 HILGNMLFLYKYGDNVEAAMGRLRYLVFYMA 119
>gi|357023490|ref|ZP_09085681.1| rhomboid family protein [Mesorhizobium amorphae CCNWGS0123]
gi|355544604|gb|EHH13689.1| rhomboid family protein [Mesorhizobium amorphae CCNWGS0123]
Length = 267
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 86/213 (40%), Gaps = 45/213 (21%)
Query: 118 LRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH----------- 166
LR V GLI N VF++ I F N +SL F+ +H
Sbjct: 11 LRHIRLQYVTIGLIAVNALVFLITSIGGENF-KNAAVLSL-GFIPSVVHDRVELSPEFVV 68
Query: 167 -----TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFY-- 219
+ +T AF H D+ H+ NM+ L+ FG ++ LG L Y+ A G+ F
Sbjct: 69 IPESLSYLTYAFLHADIFHLGGNMLFLWVFGDNVEDALGHIRYLIFYLLCAAAGAFFQGL 128
Query: 220 -----------------LVYHAFLAMSSKRQGMWVVD----PSRTPA---LGVFLIGKDM 255
V A+L + R +WV+ P R PA L ++++ + +
Sbjct: 129 VAWDSQVPLIGASGAIAGVVAAYLIL-YPRVKVWVLAFARIPLRIPAFIPLILWIVFQIV 187
Query: 256 LRIIEGNSNISGSAHLGGAAVAALAWARIRRRG 288
+ G +S + H+GG A+ +RRRG
Sbjct: 188 MFAAGGEDQVSWACHIGGIIAGAVLVLVLRRRG 220
>gi|433640241|ref|YP_007286000.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070008]
gi|432156789|emb|CCK54054.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070008]
Length = 249
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 52/107 (48%), Gaps = 8/107 (7%)
Query: 119 RQYGSSEVV-YGLIIANTAVFMLWRIADPKFMANNFTISL--DNFLSGRLHTLITSAFSH 175
RQ ++ VV Y LI+ N VF++ M ++L SG+ + L+TSAF H
Sbjct: 31 RQRSATPVVTYTLILLNALVFVM----QVTVMGLERQLALWPPAVASGQTYRLVTSAFLH 86
Query: 176 IDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF-YLV 221
H++ NM LY G + LG LY A+GGSV YL+
Sbjct: 87 YGAMHLLLNMWALYVVGPPLEMWLGRLRFGALYAVSALGGSVLVYLI 133
>gi|420216660|ref|ZP_14721861.1| rhomboid family protein, partial [Staphylococcus epidermidis
NIH05001]
gi|394291537|gb|EJE35341.1| rhomboid family protein, partial [Staphylococcus epidermidis
NIH05001]
Length = 326
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 18/163 (11%)
Query: 128 YGLIIANTAVFM-----LWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIV 182
Y LI+ N +++ L R +D K + + N + G + LI+S F H + EHI+
Sbjct: 1 YTLILINIVIWLCMILYLNRFSDVKLLEVGGLVHF-NVVHGEWYRLISSMFLHFNFEHIL 59
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA-----------FLAMSSK 231
NM+ L+ FG + +G +L +Y+ + G+ L ++ F + S
Sbjct: 60 MNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIGSI 119
Query: 232 RQGMWVVDPSRTPALGVFLIGKDMLRIIEG-NSNISGSAHLGG 273
M++ +G LI +L + SNI+ AHLGG
Sbjct: 120 FVIMYLSKNFNKKMIGQLLIALVVLIVFSLFMSNINIMAHLGG 162
>gi|289432110|ref|YP_003461983.1| rhomboid family protein [Dehalococcoides sp. GT]
gi|288945830|gb|ADC73527.1| Rhomboid family protein [Dehalococcoides sp. GT]
Length = 190
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 37/58 (63%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA 224
T++TS F H D+ H+ +N++ LYFFG ++ + + L ++ G + GS+ +++ +A
Sbjct: 50 TIVTSLFVHADLWHLFANILTLYFFGNALLQMISQRSWLIIFFGGGLAGSLLFILLNA 107
>gi|167572865|ref|ZP_02365739.1| serine protease, rhomboid family protein [Burkholderia oklahomensis
C6786]
Length = 201
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 28/148 (18%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY----- 222
++T + H + H++ NM+GL FG + R+LG LY+A + G++ LV
Sbjct: 50 IVTYSALHAGLSHLIFNMLGLVMFGRDVERSLGRARFGTLYLASVVCGALTQLVVARYTA 109
Query: 223 -----------------HAFLAMSSKRQGMWVVDPSRTPALGVFLI--GKDMLRIIEG-N 262
A+ + R+ + + P PA L+ G ++L + G
Sbjct: 110 TGGAPTIGASAGVFGVLAAYALLYPSRRVVLLFPPIPMPAWVFALVYAGVELLLGVAGAA 169
Query: 263 SNISGSAHLG---GAAVAALAWARIRRR 287
S I+ AHLG GA V L WAR RR
Sbjct: 170 SGIAHFAHLGGMFGALVLVLFWARPRRE 197
>gi|198274049|ref|ZP_03206581.1| hypothetical protein BACPLE_00186 [Bacteroides plebeius DSM 17135]
gi|198273127|gb|EDY97396.1| peptidase, S54 family [Bacteroides plebeius DSM 17135]
Length = 297
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 78/195 (40%), Gaps = 41/195 (21%)
Query: 119 RQYGSSEVVYGLIIANTAVFMLWRI-----------ADPKFMANNFTISLDNFLSGRLHT 167
R++ ++V L+ N AVF++ + A P + F+ R T
Sbjct: 12 RKFQQGDIVLRLVYVNVAVFLVVTLVQIFLTLFNVLASPWMNYLELPAWTETFIR-RPWT 70
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL------- 220
LIT F H V HI+ NM+ L++FG ++L LY G I G + Y+
Sbjct: 71 LITYMFMHAGVLHILFNMLWLFWFGRLFLAFFSSKHLRGLYFLGGICGGLLYMLAYNVFP 130
Query: 221 -----VYHAFLAMSSKRQGMWVVDPS----------------RTPALGVFLIGKDMLRII 259
VY ++L +S VV S R + +F++ D+L +
Sbjct: 131 YFQDVVYSSYLLGASASVLAIVVAVSVREPNYPVQFLFIGTVRLKYVALFMVALDLLFMT 190
Query: 260 EGNSNISGSAHLGGA 274
N+ AHLGGA
Sbjct: 191 SENAG-GHIAHLGGA 204
>gi|162312279|ref|NP_596266.2| mitochondrial rhomboid protease (predicted) [Schizosaccharomyces
pombe 972h-]
gi|3219925|sp|O14364.1|YOHB_SCHPO RecName: Full=Uncharacterized protein C13E7.11
gi|157310447|emb|CAB89886.2| mitochondrial rhomboid protease (predicted) [Schizosaccharomyces
pombe]
Length = 298
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 118 LRQYGSSEVVYGLIIANTAVFMLWRIADPKF-MANNF--TISLDNFLSGRLHTLITSAFS 174
+ Q S +V +I N VF LWR P+F N F ++ N + + ++I SAFS
Sbjct: 71 IPQTSSRSLVLSIIGINVGVFALWR--APRFSHLNRFLQKYAVMNPIFINMPSMIVSAFS 128
Query: 175 HIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
H H++ NM+ Y F +I G + Y++ + +V L++H
Sbjct: 129 HQSGWHLLFNMVAFYSFAPAIVDVFGNNQFVAFYISSILFSNVASLLHH 177
>gi|333999825|ref|YP_004532437.1| rhomboid family protein [Treponema primitia ZAS-2]
gi|333738842|gb|AEF84332.1| rhomboid family protein [Treponema primitia ZAS-2]
Length = 209
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 75/173 (43%), Gaps = 31/173 (17%)
Query: 134 NTAVFMLWRIADPKFMANNFTISLDNFL--SGRLHTLITSAFSHIDVEHIVSNMIGLYFF 191
N +F++ ++ +P+ + ++L+ L +G +T F+H + HI+ NM+ L+FF
Sbjct: 23 NVLIFVM-QMINPRI---TYYLALNPILIRNGFYWQFLTYMFAHGSITHILFNMLALFFF 78
Query: 192 GMSIGRTLG-PEYLLKLYMAGAIGGSVFYLVY---HAFLAMSSKRQG------------- 234
G + R +G E+LL + G + G + + +Y A++ G
Sbjct: 79 GAQVERRMGSKEFLLYYLVTGVLAGVLSFCIYWFTGAYMVQLMGASGALFAVQLAYATFF 138
Query: 235 ------MWVVDPSRTPALGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAW 281
+W + P R P + + ++ + G SG AHL A A W
Sbjct: 139 PDSMVYLWGILPLRAPVMVLGFTALELFSSVFGFR--SGVAHLTHLAGFAFGW 189
>gi|157150215|ref|YP_001449482.1| hypothetical protein SGO_0161 [Streptococcus gordonii str. Challis
substr. CH1]
gi|157075009|gb|ABV09692.1| conserved hypothetical protein [Streptococcus gordonii str. Challis
substr. CH1]
Length = 227
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%)
Query: 171 SAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
+ F HI +EH V NM+ LYF G I GP L LY+ + G++F
Sbjct: 64 AIFVHIGLEHFVVNMLTLYFLGRQIEDIFGPWKFLLLYLMSGVMGNLF 111
>gi|68468321|ref|XP_721720.1| potential Rhomboid family membrane protein [Candida albicans
SC5314]
gi|46443652|gb|EAL02932.1| potential Rhomboid family membrane protein [Candida albicans
SC5314]
gi|238880628|gb|EEQ44266.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 327
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
+++ LI N AVF++WRI ++ + I + L TL+ SAFSH H N
Sbjct: 127 SLLWSLIGINGAVFLMWRIPRLQWFTMKYGILFKDNLQSP-WTLLGSAFSHQSFAHFFIN 185
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMS 229
M+ FG ++ LG +Y+ A+ S L FL S
Sbjct: 186 MLAFQSFGSTLVAFLGVSNFTIMYLNSAVISSFASLAIPMFLGSS 230
>gi|374594805|ref|ZP_09667809.1| Rhomboid family protein [Gillisia limnaea DSM 15749]
gi|373869444|gb|EHQ01442.1| Rhomboid family protein [Gillisia limnaea DSM 15749]
Length = 226
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 60/138 (43%), Gaps = 29/138 (21%)
Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMA------------ 210
G + ++TS F H+D H+ NM+ LYFF + +G L +Y+A
Sbjct: 53 GAKYQILTSGFLHVDSSHLFVNMLTLYFFANVVLNDMGSLGFLLVYLASLILGNLLSYFF 112
Query: 211 -------GAIG--GSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG 261
A+G G+V ++Y A L G++ + P PA VF IG +L I G
Sbjct: 113 HKDEENYNAVGASGAVMGVLYSAILLRPDMMLGLFFIIP--IPAY-VFGIGY-LLYTIYG 168
Query: 262 ----NSNISGSAHLGGAA 275
NI AH GGA
Sbjct: 169 MKRRQDNIGHDAHFGGAV 186
>gi|237835383|ref|XP_002366989.1| peptidase S54 family domain-containing protein [Toxoplasma gondii
ME49]
gi|211964653|gb|EEA99848.1| peptidase S54 family domain-containing protein [Toxoplasma gondii
ME49]
gi|221506336|gb|EEE31971.1| peptidase, S54 family protein [Toxoplasma gondii VEG]
Length = 567
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 121 YGSSEVVYGLIIANTAVFMLWRIADP-------KFMANNFTISLDNFLSGRLHTLITSAF 173
Y +++ ++ N AVF WR+A F+ +F + +N S R++T +TS+
Sbjct: 302 YEHRKLLGAFLMTNAAVFTGWRLAATAGNGTWWTFLMRHFVLCRENLASARIYTFVTSSL 361
Query: 174 SHIDVEHIVSNM 185
SH H++ N+
Sbjct: 362 SHKSTGHLIFNL 373
>gi|311748629|ref|ZP_07722414.1| rhomboid family protein [Algoriphagus sp. PR1]
gi|126577155|gb|EAZ81403.1| rhomboid family protein [Algoriphagus sp. PR1]
Length = 310
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 88/219 (40%), Gaps = 41/219 (18%)
Query: 107 FASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLS---- 162
+ +F R+ R +S +Y LI N VFM+ +A + LS
Sbjct: 2 YGNFWENLRNAFRHNNNS--LYKLIAINLIVFMVILVARVMLTITGYGDLYSAGLSHLMM 59
Query: 163 ----GRLHT----LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIG 214
G+L T + T F H + HI+ NM+ L++FG + + LG L LY+ G +
Sbjct: 60 PASLGKLATQPWSIFTYMFLHEGIFHILFNMLFLFWFGQLVHQFLGSRKLANLYVLGGLA 119
Query: 215 GSVFYLVYH-------------AFLAMSSKRQGMWVVDPSRTPALGVFLI--GKDMLRII 259
G++FYL+ + L S+ + V + +P FLI G ++ I
Sbjct: 120 GALFYLLIYNLAPYFRGAIDSSMMLGASAGVFAIVVGAATLSPNTTFFLILLGPVKIKYI 179
Query: 260 -----------EGNSNISGS-AHLGGAAVAALAWARIRR 286
+N G AHLGGA + +RR
Sbjct: 180 AIFYVILSFANSAGANAGGELAHLGGALLGYFYIVELRR 218
>gi|426196829|gb|EKV46757.1| hypothetical protein AGABI2DRAFT_193382 [Agaricus bisporus var.
bisporus H97]
Length = 433
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 115 RSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFS 174
+ W+ + + + + N AV++ W+I P++ + N LSG +TL+TS FS
Sbjct: 166 QPWVDASEGKRLCWKICMLNAAVWVAWKI--PRWQPAMAVRFMHNPLSGLSYTLLTSMFS 223
Query: 175 HIDVEHIVSNMIGLYFFG 192
H + H++ N + L FG
Sbjct: 224 HRGLLHLIMNCLALEGFG 241
>gi|85817538|gb|EAQ38712.1| rhomboid family protein [Dokdonia donghaensis MED134]
Length = 294
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 81/188 (43%), Gaps = 34/188 (18%)
Query: 120 QYGSSEVVYGLIIANTAVFMLWRIAD------PKFMANNFTISLD--NFLSGRLHTLITS 171
+Y ++ + LI+ N V++L+ I + F + D FL + +++T
Sbjct: 9 KYKTANIAIKLIVVNVLVYVLFNIISWLVGLGSGAFSQYFVLPSDVIRFLQ-QPWSVVTY 67
Query: 172 AFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAI-GGSVFYLVYH------- 223
AF H H+ NM+ LY F + + L +Y+ GAI GG +F L+Y+
Sbjct: 68 AFLHSGFGHLFWNMVFLYVFSRFVLNLFSEKKFLAIYLLGAIAGGVLFALLYNVLPVFRG 127
Query: 224 --AFLAMSSKRQGMWVVDPSRTPA--------------LGVFLIGKDMLRIIEGNSNISG 267
L S+ + V + TP + F++ KD+L + GN+
Sbjct: 128 TGVLLGASAAVNAIVVFIGTYTPDAEVRIFTFNVKLWWIAAFIVVKDILLLDAGNAG-GL 186
Query: 268 SAHLGGAA 275
+HLGGAA
Sbjct: 187 ISHLGGAA 194
>gi|409081591|gb|EKM81950.1| hypothetical protein AGABI1DRAFT_70511 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 433
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 115 RSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFS 174
+ W+ + + + + N AV++ W+I P++ + N LSG +TL+TS FS
Sbjct: 166 QPWVDASEGKRLCWKICMLNAAVWVAWKI--PRWQPAMAVRFMHNPLSGLSYTLLTSMFS 223
Query: 175 HIDVEHIVSNMIGLYFFG 192
H + H++ N + L FG
Sbjct: 224 HRGLLHLIMNCLALEGFG 241
>gi|359425053|ref|ZP_09216156.1| rhomboid family protein [Gordonia amarae NBRC 15530]
gi|358239633|dbj|GAB05738.1| rhomboid family protein [Gordonia amarae NBRC 15530]
Length = 299
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 76/175 (43%), Gaps = 21/175 (12%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFL------SGRLHTLITSAFSHIDVE 179
V YGLI N VF++ N ++ D L G L+T+ F H +
Sbjct: 75 VTYGLIAFNVLVFVICVGQAGGTDMLNSSLFTDWALFKPFVHDGEYWRLLTAGFLHFSLT 134
Query: 180 HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQG----- 234
HI +NM+ L+ G + +G +Y+A +GGS +++ L +++ G
Sbjct: 135 HIAANMLSLFLLGRDLELAIGYPRYAGVYLASLVGGSAAVMLFAGDLTINAGASGAIYGL 194
Query: 235 ---MWVV----DPSRTPALGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWA 282
M V+ S P L + IG +++ I IS +AHLGG ALA A
Sbjct: 195 MGAMLVIVLRMRASPVPVLSI--IGLNIVLSIT-VPGISLAAHLGGLLFGALATA 246
>gi|304394215|ref|ZP_07376138.1| rhomboid family protein [Ahrensia sp. R2A130]
gi|303293655|gb|EFL88032.1| rhomboid family protein [Ahrensia sp. R2A130]
Length = 252
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 65/161 (40%), Gaps = 36/161 (22%)
Query: 143 IADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPE 202
I D K + + + D+F T IT AF H D+ H+ NM+ ++ FG ++ +G
Sbjct: 45 INDLKTLPAQYAVVPDDF---YWVTAITGAFLHADIWHLGGNMLFIWVFGDNVEDAMGHF 101
Query: 203 YLLKLYMAGAIGGSVFYLVYHAF----------------------LAMSSKRQGMWVVDP 240
Y+ A GS F HAF M + +WV+
Sbjct: 102 KFAIFYLLCAFAGSWF----HAFSFPASDAALIGASGAAAGIIAAYLMLHPKVWVWVLFA 157
Query: 241 SRTP-------ALGVFLIGKDMLRIIEGNSNISGSAHLGGA 274
+R P LG +L + + ++ + IS +AH+GG
Sbjct: 158 ARIPLRLPAWTVLGFWLGMQVWMYVMSSDGEISWAAHVGGG 198
>gi|403365427|gb|EJY82497.1| hypothetical protein OXYTRI_19890 [Oxytricha trifallax]
Length = 243
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 129 GLIIA--NT---AVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVS 183
G++IA NT ++++W NNFT S N GRLHT TS F+H+ +
Sbjct: 66 GILIAALNTFCYLMYLMWPRHQMYSYLNNFTFSKFNLNQGRLHTFFTSHFTHMSFLSYLL 125
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
+ + +Y F ++ GP +++K + GS + H
Sbjct: 126 DTVIIYLFCQNLSMMFGPVFVVKNILLSMFMGSFLLFLQH 165
>gi|384867478|ref|YP_005747674.1| rhomboid family protein [Staphylococcus aureus subsp. aureus TCH60]
gi|417901080|ref|ZP_12544957.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21266]
gi|418652792|ref|ZP_13214755.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-99]
gi|418955633|ref|ZP_13507570.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-189]
gi|312437983|gb|ADQ77054.1| rhomboid family protein [Staphylococcus aureus subsp. aureus TCH60]
gi|341846239|gb|EGS87436.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21266]
gi|375020960|gb|EHS14467.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-99]
gi|375370719|gb|EHS74517.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-189]
Length = 426
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
N + G + ++TS F H EHI+ NM+ L+ FG + +G +L +Y + G+
Sbjct: 135 NVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFV 194
Query: 219 YLVYHA-----------FLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG----NS 263
L ++ F + S M+V LG LI L I+ G S
Sbjct: 195 SLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIA---LVILVGVSLFMS 251
Query: 264 NISGSAHLGG 273
NI+ AH+GG
Sbjct: 252 NINIVAHIGG 261
>gi|73667754|ref|YP_303769.1| rhomboid protein [Methanosarcina barkeri str. Fusaro]
gi|72394916|gb|AAZ69189.1| rhomboid protein [Methanosarcina barkeri str. Fusaro]
Length = 207
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 139 MLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRT 198
M+ I D F A F N+L R TLIT F H + H++ NM+ LYFFG ++ R
Sbjct: 27 MIPGIGDAYFNAFYFD---PNYLITRPWTLITYIFLHNGLVHLLFNMLVLYFFGTALERR 83
Query: 199 LGPEYLLKLYMAGAIGGSVFY 219
+G LL ++ I ++ Y
Sbjct: 84 IGNRQLLAIFFTAGILSAIGY 104
>gi|15643350|ref|NP_228394.1| hypothetical protein TM0584 [Thermotoga maritima MSB8]
gi|418045242|ref|ZP_12683338.1| Rhomboid family protein [Thermotoga maritima MSB8]
gi|4981102|gb|AAD35669.1|AE001733_6 conserved hypothetical protein [Thermotoga maritima MSB8]
gi|351678324|gb|EHA61471.1| Rhomboid family protein [Thermotoga maritima MSB8]
Length = 235
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 16/128 (12%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPE-YLLKLYMAGAIGGSVFYL 220
+G LIT+ F H + HI+ N LY+FG+ + G E +L+ + G +G ++
Sbjct: 51 AGDWFRLITALFVHGGILHILFNSYALYYFGLIVEDIYGTEKFLVGYFFTGIVGNLATHV 110
Query: 221 VYHAFLAMSSKRQ-----GMWVVDPSR-------TPALGVFLIGKDMLRIIEG---NSNI 265
YH +++ + G+ R P GV L+ ++ ++ G +NI
Sbjct: 111 FYHDTISVGASGAIFGLIGILFAAGFRKDTPFFMKPVTGVSLLPIILINVVYGFLPGTNI 170
Query: 266 SGSAHLGG 273
+ +AHLGG
Sbjct: 171 NNAAHLGG 178
>gi|348681048|gb|EGZ20864.1| hypothetical protein PHYSODRAFT_259388 [Phytophthora sojae]
Length = 235
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 147 KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLK 206
F+A NFT S D G +HTL TS + + N++ L G + R LG L
Sbjct: 76 DFVARNFTTSTDKVRCGNVHTLATSTLYSPNARSALLNVLWLVIPGRRVCRALGNTQFLA 135
Query: 207 LYM-AGAIGGSV 217
L++ +G I +V
Sbjct: 136 LFIGSGTIANTV 147
>gi|258568632|ref|XP_002585060.1| predicted protein [Uncinocarpus reesii 1704]
gi|237906506|gb|EEP80907.1| predicted protein [Uncinocarpus reesii 1704]
Length = 571
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADPKF-MANNFTISLDNFLSGRLHTLITSAFSHIDVEHI 181
++ LI N A+F LWR P + + N + IS+ L + I FSH + H+
Sbjct: 358 AAATALSLIGTNVAIFALWRAFPPAWRLLNRYFISVP--LYPYALSTIGCVFSHQQLHHL 415
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+NM L+F G + +G L LY + S+ L H
Sbjct: 416 GANMFILWFVGTRLHDEVGRGNFLALYFSAGAVSSITSLAAHVL 459
>gi|300694566|ref|YP_003750539.1| rhomboid protease [Ralstonia solanacearum PSI07]
gi|299076603|emb|CBJ35939.1| putative rhomboid protease [Ralstonia solanacearum PSI07]
Length = 543
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA 224
L+++ F H V H+ N+IGLY G+++ R GP L +Y+ + GS L + A
Sbjct: 230 LLSATFLHAGVLHLAINVIGLYATGIAVERIYGPAAYLLIYLGAGLLGSALSLSFAA 286
>gi|407976842|ref|ZP_11157738.1| rhomboid-like protein [Nitratireductor indicus C115]
gi|407427741|gb|EKF40429.1| rhomboid-like protein [Nitratireductor indicus C115]
Length = 255
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 67/150 (44%), Gaps = 33/150 (22%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T IT +F H D+ H+ NM+ L+ FG ++ LG L Y+A A+ G+ H F+
Sbjct: 74 TYITYSFLHGDLMHLGGNMLFLWVFGDNVEDALGHFRYLVFYLACAVAGAYM----HGFI 129
Query: 227 AMSSK----------------------RQGMWVVD----PSRTPA---LGVFLIGKDMLR 257
A S R +WV+ P R PA L +++ + ++
Sbjct: 130 APDSNAPLIGASGAIAGIVAAYLILHPRIRIWVLAFARIPLRIPAFIVLALWIGFQFLML 189
Query: 258 IIEGNSNISGSAHLGGAAVAALAWARIRRR 287
+I+ + +S +AH GG A+ ++RR
Sbjct: 190 LIDTENQVSWAAHAGGILAGAVLVLVLKRR 219
>gi|409392616|ref|ZP_11244170.1| hypothetical protein GORBP_101_00320 [Gordonia rubripertincta NBRC
101908]
gi|403197559|dbj|GAB87404.1| hypothetical protein GORBP_101_00320 [Gordonia rubripertincta NBRC
101908]
Length = 241
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 7/120 (5%)
Query: 122 GSSEVVYGLIIANTAVFMLWRI-----ADPKFMA--NNFTISLDNFLSGRLHTLITSAFS 174
G V Y LI N +F+L + DP A ++ + + +G L+TS F
Sbjct: 12 GKPYVTYTLIGINILIFLLCAVQAGSFGDPGAAAIFSSGDLLKSDVAAGEYWRLLTSGFL 71
Query: 175 HIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQG 234
H V H+ NM+ LY G + LG + +Y+ +GGS +++ A+++ G
Sbjct: 72 HFSVMHVAVNMLSLYILGRDLELALGMSRYVAVYLIALLGGSAAVMLFENDRALTAGASG 131
>gi|386345548|ref|YP_006041712.1| hypothetical protein STH8232_2117 [Streptococcus thermophilus JIM
8232]
gi|339279009|emb|CCC20757.1| hypothetical protein STH8232_2117 [Streptococcus thermophilus JIM
8232]
Length = 224
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 17/128 (13%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
LIT F HI VEH + NM+ LYF G + G L LY+ + G+ F L++ +
Sbjct: 61 LITPIFVHIGVEHFLFNMLTLYFMGRMAEQIFGTLRFLGLYLLAGVMGNAFTLLFTPNVI 120
Query: 228 MSSKRQGMW--------VVDPSRTPALGVFLIGKDMLRIIEGN-------SNISGSAHLG 272
+ ++ + S +P L +G++ L +I N ++ + HLG
Sbjct: 121 AAGASTSLFGLFAAIVIIGYYSHSPLLNQ--LGRNYLALIVINLIFNLFTPSVGITGHLG 178
Query: 273 GAAVAALA 280
G ALA
Sbjct: 179 GLVGGALA 186
>gi|328949134|ref|YP_004366471.1| peptidase S54, rhomboid domain-containing protein [Treponema
succinifaciens DSM 2489]
gi|328449458|gb|AEB15174.1| Peptidase S54, rhomboid domain protein [Treponema succinifaciens
DSM 2489]
Length = 207
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 27/142 (19%)
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLG-PEYLLKLYMAGAIGGSVFYLVYHAFLA 227
+T F H HI+ NM+ L+FFG+S+ R +G E+LL ++ G + G + ++Y L
Sbjct: 56 LTYLFVHSGWSHILFNMLALFFFGISVERAVGSKEFLLFYFLCGILDGIISTVLYR-LLG 114
Query: 228 MSSKRQG----------------------MWVVDPSRTPALGVFLIGKDMLRIIEGNSNI 265
++ G +W + P P L VF+ ++ I S
Sbjct: 115 ITVLLVGASGAVYALLFAYAVIFPRNVIYIWGIIPVAAPLL-VFV--YALIEITSQISGG 171
Query: 266 SGSAHLGGAAVAALAWARIRRR 287
SG AHL A A+AW R
Sbjct: 172 SGIAHLAHLAGFAVAWIYFVAR 193
>gi|392418856|ref|YP_006455461.1| putative membrane protein [Mycobacterium chubuense NBB4]
gi|390618632|gb|AFM19782.1| putative membrane protein [Mycobacterium chubuense NBB4]
Length = 285
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 119 RQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDV 178
R+ + V Y LI N +F+L ++ + + G L+ L+T+AF H
Sbjct: 67 RRSAAPVVTYALIGLNVLMFVLQSLSPD--VERALVLWPPAVAGGDLYRLLTAAFLHYGF 124
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
HI+ NM LY G + LG LY+ A+GGSV
Sbjct: 125 THILFNMWALYVVGAPLEAALGRLRYGALYLLSALGGSVL 164
>gi|116333635|ref|YP_795162.1| membrane-associated serine protease [Lactobacillus brevis ATCC 367]
gi|116098982|gb|ABJ64131.1| Membrane-associated serine protease [Lactobacillus brevis ATCC 367]
Length = 226
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
Query: 108 ASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMAN---NFTISLDNFLS-G 163
A+F+YR R+ L Q + + GL++ VF+ +A N F ++ + G
Sbjct: 2 ANFKYRLRN-LNQ--TPYMTTGLVVIMVLVFVAMTLAGGSTSLNVLVAFGAKVNPLIQQG 58
Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
+ LIT F HI HI NM+ LYF G + G L +++ IGG+V
Sbjct: 59 QWWRLITPMFLHIGFTHIFLNMVTLYFVGTQLEAAFGHARFLIIFLVAGIGGNV 112
>gi|344175451|emb|CCA88130.1| putative peptidase S54, rhomboid family [Ralstonia syzygii R24]
Length = 197
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 64/148 (43%), Gaps = 30/148 (20%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMA----------------- 210
L+T AF H V H+V NM G++ FG + R LG LY+A
Sbjct: 48 LVTYAFLHASVPHLVFNMFGMFMFGRDVERALGRARTGALYLASVLSAAFTQMAVVGLFT 107
Query: 211 -------GAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPA---LGVFLIGKDMLRIIE 260
GA GG VF L+ A+ + +R + ++ P PA V+ + + L +
Sbjct: 108 FPAGPIVGASGG-VFGLLL-AYAVLFPRRMILLLIPPIPMPAWLFATVYALVELTLGVSG 165
Query: 261 GNSNISGSAHLGG-AAVAALAWARIRRR 287
+S ++ AHLGG A L W R R
Sbjct: 166 SHSGVAHFAHLGGMAGSGVLLWRWFRGR 193
>gi|29348241|ref|NP_811744.1| rhomboid family protein [Bacteroides thetaiotaomicron VPI-5482]
gi|298386066|ref|ZP_06995623.1| rhomboid family protein [Bacteroides sp. 1_1_14]
gi|383121826|ref|ZP_09942530.1| hypothetical protein BSIG_1818 [Bacteroides sp. 1_1_6]
gi|29340144|gb|AAO77938.1| rhomboid family protein [Bacteroides thetaiotaomicron VPI-5482]
gi|251841412|gb|EES69493.1| hypothetical protein BSIG_1818 [Bacteroides sp. 1_1_6]
gi|298261294|gb|EFI04161.1| rhomboid family protein [Bacteroides sp. 1_1_14]
Length = 300
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 29/136 (21%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH--- 223
+L++ F H HI+ NM+ LY+FG ++L LY+ G I G +FY++ +
Sbjct: 68 SLLSYMFMHAGFLHILFNMLWLYWFGSLFLYFFSGKHLRGLYVLGGICGGLFYMIAYNIF 127
Query: 224 --------------------AFLAMSSKRQ-----GMWVVDPSRTPALGVFLIGKDMLRI 258
A +A ++ R+ +++ R L + +IG D+L I
Sbjct: 128 PYFSQTLPFSTLVGASASVLAIVAATAYREPNYRVQLFLFGAVRLKYLALIVIGTDLLFI 187
Query: 259 IEGNSNISGSAHLGGA 274
N+ AHLGGA
Sbjct: 188 TSNNAG-GHIAHLGGA 202
>gi|408823841|ref|ZP_11208731.1| rhomboid family protein [Pseudomonas geniculata N1]
Length = 230
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 145 DPKFMANNFTISLD---NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP 201
D ++ T LD G + L T+ F H D H++ N++ L FG+ R LGP
Sbjct: 45 DWGALSTGLTHPLDWWATLQDGSVLRLFTALFLHADWSHLLGNLVFLLIFGLPAERVLGP 104
Query: 202 EYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQ 233
LL L++ +GG+V LV A M S Q
Sbjct: 105 WRLLLLFL---VGGAVSNLV--AIYTMGSPDQ 131
>gi|345304981|ref|XP_001509452.2| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like [Ornithorhynchus anatinus]
Length = 286
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 120 QYGSSEVVYGLIIANTAVFMLWRIAD-PKFMANNFTISLDNFLSGRLHT-LITSAFSHID 177
Q V +I AN VF LWR+ + M FT N S L + ++ S FSH
Sbjct: 69 QCSIKRVPASIIAANVFVFCLWRVPSLQRSMIKYFT---SNPASKTLCSPMLLSTFSHFS 125
Query: 178 VEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYM-AGAIGGSVFYL 220
+ H+ +NM L+ F SI LG E + +Y+ AG I V Y+
Sbjct: 126 LFHMAANMYVLWSFSSSIVNILGREQFMAVYLSAGVISTFVSYV 169
>gi|417937077|ref|ZP_12580383.1| peptidase, S54 family [Streptococcus infantis X]
gi|343399519|gb|EGV12041.1| peptidase, S54 family [Streptococcus infantis X]
Length = 230
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 17/136 (12%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY--HAF 225
L ++ F HI ++H + NM+ LYF G + + G + +Y+ + G++F LV+ A
Sbjct: 67 LFSATFVHIGLQHFLVNMLSLYFLGRQMEQIFGSKQFFFIYLLSGMMGNLFVLVFSPDAI 126
Query: 226 LA-MSSKRQGMW---VV--DPSRTPALGVFLIGKDMLRIIEGN-------SNISGSAHLG 272
A S+ GM+ VV SR P L +G+ L ++ N IS + HLG
Sbjct: 127 TAGASTALYGMFASIVVLRYASRNPYLQQ--LGQSYLSLLVINLVGSVLIPGISLAGHLG 184
Query: 273 GAAVAALAWARIRRRG 288
GA AL RG
Sbjct: 185 GAVGGALLAIVFPVRG 200
>gi|317472135|ref|ZP_07931467.1| rhomboid family protein [Anaerostipes sp. 3_2_56FAA]
gi|316900539|gb|EFV22521.1| rhomboid family protein [Anaerostipes sp. 3_2_56FAA]
Length = 309
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Query: 131 IIANTAVFM-LWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLY 189
+I +FM LW A + + + F G L+ L+TS F H +H+ +NMI
Sbjct: 131 VILTINIFMYLWSAASTEILNWGALTWMHAFKQGELYRLVTSNFLHNGFDHLFNNMIVFV 190
Query: 190 FFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
G + G + LYM + GS+ VY+
Sbjct: 191 LIGSRLEPIFGRARYVALYMGAGLCGSIVSAVYY 224
>gi|404378219|ref|ZP_10983316.1| hypothetical protein HMPREF9021_00169 [Simonsiella muelleri ATCC
29453]
gi|294484089|gb|EFG31772.1| hypothetical protein HMPREF9021_00169 [Simonsiella muelleri ATCC
29453]
Length = 220
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 27/50 (54%)
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
ITSAF H D+ H+ NM LYFF I G L LY+A + G+ F
Sbjct: 49 ITSAFLHADMMHLFFNMFTLYFFSRVIAAVYGVWLFLGLYLASVLAGNAF 98
>gi|325961464|ref|YP_004239370.1| hypothetical protein Asphe3_00160 [Arthrobacter phenanthrenivorans
Sphe3]
gi|323467551|gb|ADX71236.1| uncharacterized membrane protein [Arthrobacter phenanthrenivorans
Sphe3]
Length = 291
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 122 GSSEVVYGLIIANTAVFML-WRI-ADPKFMANNFTISLDNFLSGRLHT--LITSAFSHID 177
G V +G+I A +++L W I +D F F G ++T+AF H
Sbjct: 75 GKPMVTFGIIAACAVLYVLQWVIPSDAVFRNLAFASVYATPEYGAFEPWRMLTAAFLHSQ 134
Query: 178 --VEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
+ HIV NM L+ FG ++ LG L +Y+ AIGGSV YL L
Sbjct: 135 GFILHIVLNMYMLWIFGQALEPLLGRVRFLAVYLLSAIGGSVGYLALTPIL 185
>gi|344205752|ref|YP_004790893.1| rhomboid family protein [Stenotrophomonas maltophilia JV3]
gi|343777114|gb|AEM49667.1| Rhomboid family protein [Stenotrophomonas maltophilia JV3]
Length = 230
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 145 DPKFMANNFTISLD---NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP 201
D ++ T LD G + L T+ F H D H++ N++ L FG+ R LGP
Sbjct: 45 DWGALSTGLTHPLDWWATLQDGSVLRLFTALFLHADWSHLLGNLVFLLIFGLPAERVLGP 104
Query: 202 EYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQ 233
LL L++ +GG+V LV A M S Q
Sbjct: 105 WRLLLLFL---VGGAVSNLV--AIYTMGSPDQ 131
>gi|254520926|ref|ZP_05132981.1| peptidase, S54 (rhomboid) family, putative [Stenotrophomonas sp.
SKA14]
gi|219718517|gb|EED37042.1| peptidase, S54 (rhomboid) family, putative [Stenotrophomonas sp.
SKA14]
Length = 230
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 145 DPKFMANNFTISLD---NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP 201
D ++ T LD G + L T+ F H D H++ N++ L FG+ R LGP
Sbjct: 45 DWGALSTGLTHPLDWWATLQDGSVLRLFTALFLHADWSHLLGNLVFLLIFGLPAERVLGP 104
Query: 202 EYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQ 233
LL L++ +GG+V LV A M S Q
Sbjct: 105 WRLLLLFL---VGGAVSNLV--AIYTMGSPDQ 131
>gi|190344799|gb|EDK36554.2| hypothetical protein PGUG_00652 [Meyerozyma guilliermondii ATCC
6260]
Length = 327
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
++Y +I N AVF++W+ + + + + +S ++ SAFSH HI+ N
Sbjct: 130 ALIYTIIALNGAVFLMWKSPQMVRYLTRYGLLVKDNVSN--WAMVGSAFSHQSFSHILIN 187
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
M L FG ++ +G E LY+ A+ S F
Sbjct: 188 MFVLQSFGSTLVSMIGVENFTSLYLNSAVISSFF 221
>gi|17549219|ref|NP_522559.1| hypothetical protein RS02331 [Ralstonia solanacearum GMI1000]
gi|17431471|emb|CAD18149.1| putative uncharacterized membrane transmembrane protein [Ralstonia
solanacearum GMI1000]
Length = 197
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 65/148 (43%), Gaps = 30/148 (20%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMA----------------- 210
L+T AF H V H+V NM G++ FG + R LG LY+A
Sbjct: 48 LLTYAFLHASVPHLVFNMFGMFMFGRDVERALGRVRTGVLYLASVLSAAFTQMAVMGLST 107
Query: 211 -------GAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPA---LGVFLIGKDMLRIIE 260
GA GG VF L+ A+ + +R + ++ P PA V+ + + L I
Sbjct: 108 LPAGPIVGASGG-VFGLLL-AYAVLFPRRMILLLIPPIPMPAWLFATVYALVELTLGISG 165
Query: 261 GNSNISGSAHLGG-AAVAALAWARIRRR 287
+S I+ AHLGG A L W +R R
Sbjct: 166 SHSGIAHFAHLGGMAGSGVLLWRWLRGR 193
>gi|190572490|ref|YP_001970335.1| rhomboid family transmembrane protein [Stenotrophomonas maltophilia
K279a]
gi|424666760|ref|ZP_18103785.1| hypothetical protein A1OC_00318 [Stenotrophomonas maltophilia
Ab55555]
gi|190010412|emb|CAQ44020.1| putative rhomboid family transmembrane protein [Stenotrophomonas
maltophilia K279a]
gi|401069429|gb|EJP77950.1| hypothetical protein A1OC_00318 [Stenotrophomonas maltophilia
Ab55555]
gi|456737655|gb|EMF62332.1| Hypothetical protein EPM1_0006 [Stenotrophomonas maltophilia EPM1]
Length = 230
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 145 DPKFMANNFTISLD---NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP 201
D ++ T LD G + L T+ F H D H++ N++ L FG+ R LGP
Sbjct: 45 DWGALSTGLTHPLDWWATLQDGSVLRLFTALFLHADWSHLLGNLVFLLIFGLPAERVLGP 104
Query: 202 EYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQ 233
LL L++ +GG+V LV A M S Q
Sbjct: 105 WRLLLLFL---VGGAVSNLV--AIYTMGSPDQ 131
>gi|332665287|ref|YP_004448075.1| rhomboid family protein [Haliscomenobacter hydrossis DSM 1100]
gi|332334101|gb|AEE51202.1| Rhomboid family protein [Haliscomenobacter hydrossis DSM 1100]
Length = 230
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
R + L++ F H D+ H++ NM+GLY FG ++ G L Y+ +GG + YL +
Sbjct: 63 RPYQLVSHMFMHADIRHLLLNMLGLYMFGSALETFWGERKFLFYYLFSGLGGMLLYL-FV 121
Query: 224 AFLAMSS 230
+L +SS
Sbjct: 122 KYLEISS 128
>gi|332663565|ref|YP_004446353.1| rhomboid family protein [Haliscomenobacter hydrossis DSM 1100]
gi|332332379|gb|AEE49480.1| Rhomboid family protein [Haliscomenobacter hydrossis DSM 1100]
Length = 281
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 22/134 (16%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH---- 223
L++SAF H++ H++ NM+ LY F + LG + LY+ +GG++ L H
Sbjct: 48 LVSSAFLHVNWMHLIFNMLSLYAFSNLLENQLGGLNFVLLYLTSLVGGNLLALFVHRQHG 107
Query: 224 --AFLAMSSKRQGMWVVDPSRTPAL----------------GVFLIGKDMLRIIEGNSNI 265
+ + S G+ + P + G+ + + I NI
Sbjct: 108 SYSAVGASGAVCGVIFASIALFPGIEVGTFFLPFQFPGWLFGLLYVAISIYGIKSKRGNI 167
Query: 266 SGSAHLGGAAVAAL 279
AHLGGA + L
Sbjct: 168 GHEAHLGGALIGVL 181
>gi|402831710|ref|ZP_10880387.1| peptidase, S54 family [Capnocytophaga sp. CM59]
gi|402281097|gb|EJU29789.1| peptidase, S54 family [Capnocytophaga sp. CM59]
Length = 209
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 20/137 (14%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV------ 221
LI+S F H EH++ NMI L+FF I +G + +Y+ + G++F L
Sbjct: 46 LISSGFLHAGWEHLIFNMISLFFFHKIIIEEMGAGVFMLIYLGAIVLGNLFCLYIYRHQP 105
Query: 222 YHAFLAMSSKRQGMWVVDPSRTPAL----------GVFLIGKDMLRII---EGNSNISGS 268
Y++ + S G+ + P L G G + +++ EG+ N+ +
Sbjct: 106 YYSAIGASGGVSGIIFAAIALVPQLRVNFIPGWLFGTIYFGYSVYQMLNPREGD-NVGHA 164
Query: 269 AHLGGAAVAALAWARIR 285
AHLGGA + A ++
Sbjct: 165 AHLGGAIFGIIVIALLQ 181
>gi|390630603|ref|ZP_10258582.1| Membrane-associated serine protease [Weissella confusa LBAE C39-2]
gi|390484160|emb|CCF30930.1| Membrane-associated serine protease [Weissella confusa LBAE C39-2]
Length = 233
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
L+T+ F H+ H++ NMI LYF G + +GP L L++ I G++ L + A
Sbjct: 63 LLTAGFLHVTASHLIFNMITLYFIGRLLELEIGPWRFLILFLTTVISGNLMSLAFGAMNV 122
Query: 228 MSSKRQG 234
+S+ G
Sbjct: 123 ISAGASG 129
>gi|254292851|ref|YP_003058874.1| rhomboid family protein [Hirschia baltica ATCC 49814]
gi|254041382|gb|ACT58177.1| Rhomboid family protein [Hirschia baltica ATCC 49814]
Length = 231
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 65/150 (43%), Gaps = 23/150 (15%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
N+ G L T +T H D H+ N + FG + R LG L +Y+A IGG++F
Sbjct: 78 NWYDGPL-TFLTHGLLHADWAHVGMNAVFALAFGTGVVRALGVWRTLIIYVASQIGGALF 136
Query: 219 YLVYHAFLAM-SSKRQGMWVVDPSRTPAL------------------GVFLIGKDMLRII 259
YL + + +S G T A+ GVFL+G ML ++
Sbjct: 137 YLYFGQIMGGDTSIAVGASGAVSGLTGAVFLLMAKGQMLSQQFGVLSGVFLLGNVMLAVV 196
Query: 260 EG---NSNISGSAHLGGAAVAALAWARIRR 286
S I+ AH+GG V AL+ A + R
Sbjct: 197 GPTLLGSVIAWEAHVGGYIVGALSAAIMLR 226
>gi|359683182|ref|ZP_09253183.1| intramembrane protease [Leptospira santarosai str. 2000030832]
gi|410450906|ref|ZP_11304933.1| peptidase, S54 family [Leptospira sp. Fiocruz LV3954]
gi|418746239|ref|ZP_13302569.1| peptidase, S54 family [Leptospira santarosai str. CBC379]
gi|418752404|ref|ZP_13308670.1| peptidase, S54 family [Leptospira santarosai str. MOR084]
gi|422002893|ref|ZP_16350127.1| intramembrane protease [Leptospira santarosai serovar Shermani str.
LT 821]
gi|409967293|gb|EKO35124.1| peptidase, S54 family [Leptospira santarosai str. MOR084]
gi|410015218|gb|EKO77323.1| peptidase, S54 family [Leptospira sp. Fiocruz LV3954]
gi|410792786|gb|EKR90711.1| peptidase, S54 family [Leptospira santarosai str. CBC379]
gi|417258363|gb|EKT87751.1| intramembrane protease [Leptospira santarosai serovar Shermani str.
LT 821]
gi|456873624|gb|EMF88986.1| peptidase, S54 family [Leptospira santarosai str. ST188]
Length = 197
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
+TL+TS F H D H++ NMI Y FG ++ T+GP L Y+ + SV
Sbjct: 41 YTLLTSGFIHADWMHLIFNMISFYSFGKNLETTVGPIKFLLFYLGTILATSV 92
>gi|424811470|ref|ZP_18236721.1| uncharacterized membrane protein, rhomboid family [Candidatus
Nanosalinarum sp. J07AB56]
gi|339757196|gb|EGQ40777.1| uncharacterized membrane protein, rhomboid family [Candidatus
Nanosalinarum sp. J07AB56]
Length = 294
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
TL++ H H+++NM+ LYFFG ++ R + LK Y+ I S+ ++++ L
Sbjct: 125 TLLSVMVLHGSPFHLLANMVTLYFFGTALERVMNKADYLKFYIGSGIAASIGFVLFRNLL 184
Query: 227 AMSSKRQGMWVVDPS 241
A S QG + P+
Sbjct: 185 AASG--QGASALGPA 197
>gi|452819642|gb|EME26697.1| rhomboid family protein [Galdieria sulphuraria]
Length = 371
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 68/169 (40%), Gaps = 35/169 (20%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLY 189
L++ N VF+L + + ++ + SG+L+ L+T F H ++ H++ N LY
Sbjct: 168 LLVTNIVVFLLQMATANQLLLMGAKVN-ELISSGQLYRLLTPIFLHGNIAHLMVNCYSLY 226
Query: 190 FFGMSIGRTLGPEYLLKLYM-------------------------AGAIGGSVFYLVYHA 224
G + R G + LY+ G +GG YL H
Sbjct: 227 SLGPVVERCFGSHRFIGLYLFSGFFGCIASFFFSKNPSLGASGAIFGLVGGFAVYLKRHQ 286
Query: 225 FLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEGNSNISGSAHLGG 273
+L + R G++ + S +F ++L ++ S I HLGG
Sbjct: 287 YLLGETSRLGLFSIAQSL-----IF----NILMSLQRGSRIDNWGHLGG 326
>gi|194364083|ref|YP_002026693.1| rhomboid family protein [Stenotrophomonas maltophilia R551-3]
gi|194346887|gb|ACF50010.1| Rhomboid family protein [Stenotrophomonas maltophilia R551-3]
Length = 230
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 145 DPKFMANNFTISLD---NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP 201
D ++ T LD G + L T+ F H D H++ N++ L FG+ R LGP
Sbjct: 45 DWGALSTGLTHPLDWWATLQDGSVLRLFTALFLHADWSHLLGNLVFLLIFGLPAERVLGP 104
Query: 202 EYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQ 233
LL L++ +GG+V LV A M S Q
Sbjct: 105 WRLLLLFL---VGGAVSNLV--AIYTMGSPDQ 131
>gi|421111197|ref|ZP_15571676.1| peptidase, S54 family [Leptospira santarosai str. JET]
gi|410803379|gb|EKS09518.1| peptidase, S54 family [Leptospira santarosai str. JET]
Length = 197
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
+TL+TS F H D H++ NMI Y FG ++ T+GP L Y+ + SV
Sbjct: 41 YTLLTSGFIHADWMHLIFNMISFYSFGKNLETTVGPIKFLLFYLGTILATSV 92
>gi|386087436|ref|YP_006003310.1| hypothetical protein [Streptococcus thermophilus ND03]
gi|312279149|gb|ADQ63806.1| Conserved hypothetical, predicted membrane protein (TMS6)
[Streptococcus thermophilus ND03]
Length = 224
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 17/128 (13%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
LIT F HI VEH + NM+ LYF G + G L LY+ + G+ F L++ +
Sbjct: 61 LITPIFVHIGVEHFLFNMLTLYFMGRMAEQIFGTLRFLGLYLLAGVMGNAFTLLFTPNVI 120
Query: 228 MSSKRQGMW--------VVDPSRTPALGVFLIGKDMLRIIEGN-------SNISGSAHLG 272
+ ++ + S +P L +G++ L +I N ++ + HLG
Sbjct: 121 AAGASTSLFGLFAAIVIIGYYSHSPLLNQ--LGRNYLALIVINLIFNLFTPSVGITGHLG 178
Query: 273 GAAVAALA 280
G ALA
Sbjct: 179 GLVGGALA 186
>gi|159040476|ref|YP_001539729.1| rhomboid family protein [Salinispora arenicola CNS-205]
gi|157919311|gb|ABW00739.1| Rhomboid family protein [Salinispora arenicola CNS-205]
Length = 303
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 156 SLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGG 215
++ G + LIT+ F H V H++ NM L+ G ++ +LGP L LY+ +GG
Sbjct: 130 TVGGIAEGEWYRLITAMFLHYGVIHLLLNMYALWILGRNLEASLGPARFLALYLISGLGG 189
Query: 216 SV 217
+V
Sbjct: 190 NV 191
>gi|70954443|ref|XP_746268.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56526818|emb|CAH77472.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 479
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 133 ANTAVFMLWRIADP-------KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM 185
AN +F+ WR+ D FM +F S +N R HT+ T++ SH+ + H + NM
Sbjct: 188 ANGVIFLCWRLGDIVRNKRFYNFMCRHFICSYENIKKKRYHTIFTASISHMTLPHFLFNM 247
>gi|392391025|ref|YP_006427628.1| hypothetical protein Ornrh_1678 [Ornithobacterium rhinotracheale
DSM 15997]
gi|390522103|gb|AFL97834.1| putative membrane protein [Ornithobacterium rhinotracheale DSM
15997]
Length = 285
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 82/195 (42%), Gaps = 28/195 (14%)
Query: 119 RQYGSSEVVYGLIIANTAVFML-W--RIADPKFMANNFTISLDNFLS---GRLHTLITSA 172
Q+ + + LI N A+F+L W RI P N + L + S + +L T
Sbjct: 9 NQFINGNIAIKLIYINVAIFLLGWIIRIFTPIHYLNLY-FGLSPYSSDFWAKPWSLFTYM 67
Query: 173 FSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL------------ 220
F H DV H++ NM+ LYF R G + Y G I +F++
Sbjct: 68 FLHYDVLHLLFNMLMLYFVSEFYFRYFGEKSFKIFYFVGGIVAGLFFMILNTFSVQSSNL 127
Query: 221 ------VYHAFLAMSSKRQGMWVVDP-SRTPALGVFL-IGKDMLRIIEGNSNISGS-AHL 271
+Y F AM + + M + P ++P +++ IG +L + N+ G+ +H+
Sbjct: 128 IGASAAIYSVFFAMVAYQPNMELRLPFVQSPVKLLYIAIGLIVLGFLLNTDNLGGNVSHI 187
Query: 272 GGAAVAALAWARIRR 286
GGA L + +
Sbjct: 188 GGALFGYLYMKQFEK 202
>gi|406576099|ref|ZP_11051770.1| rhomboid family protein [Janibacter hoylei PVAS-1]
gi|404554503|gb|EKA60034.1| rhomboid family protein [Janibacter hoylei PVAS-1]
Length = 297
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 131 IIANTAVFMLWRIADPK-FMANNFTISLDNFLSGRLHTLITSAFSHIDVE--HIVSNMIG 187
IIA AV + + P+ F F +L RL ITSAF+H + HI+ NM+
Sbjct: 85 IIAICAVVWVAELLSPRVFQEVAFAPALGTAEPWRL---ITSAFAHSPNQPMHILFNMLA 141
Query: 188 LYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
L+ G + R LG L +Y+ A+ GSV +L++
Sbjct: 142 LWLVGGYLERMLGWARYLAVYLVAALAGSVTWLLFQ 177
>gi|407779515|ref|ZP_11126770.1| rhomboid-like protein [Nitratireductor pacificus pht-3B]
gi|407298646|gb|EKF17783.1| rhomboid-like protein [Nitratireductor pacificus pht-3B]
Length = 255
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 66/150 (44%), Gaps = 33/150 (22%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T IT +F H D+ H+ NM+ L+ FG ++ LG L Y+A A+ G+ YL H F+
Sbjct: 74 TYITYSFLHGDLLHLGGNMLFLWVFGDNVEDALGHFRYLVFYLACAVAGA--YL--HGFI 129
Query: 227 AMSSK----------------------RQGMWVVD----PSRTPALG--VFLIGKDMLRI 258
+S R +WV+ P R PA F IG L +
Sbjct: 130 EPASSSPLIGASGAIAGIVAAYLILHPRVKVWVLAFARIPLRIPAFVALAFWIGFQFLML 189
Query: 259 -IEGNSNISGSAHLGGAAVAALAWARIRRR 287
++ + +S +AH GG A+ +RRR
Sbjct: 190 FVDTENQVSWAAHAGGILAGAVLVLILRRR 219
>gi|157137243|ref|XP_001663953.1| hypothetical protein AaeL_AAEL013749 [Aedes aegypti]
gi|108869756|gb|EAT33981.1| AAEL013749-PA [Aedes aegypti]
Length = 362
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 74/201 (36%), Gaps = 26/201 (12%)
Query: 99 RAQFPERSFASFRYRWRSWLRQYGSSEVVYGLIIA-NTAVFMLWRIADPKFMANNFTISL 157
R + R +R W + E ++ I A N VF LWRI + M S
Sbjct: 129 RMKDKRREVEQWRKDVNGWWSKLSPGERIFAPICALNVVVFGLWRIPQLQPMMLRLFAS- 187
Query: 158 DNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
+ + S FSH + HI +NM L+ F TLG E L LY++ + S
Sbjct: 188 NPAAKAVCWPMFLSTFSHYSLFHIAANMYVLHSFCHGAVATLGREQFLGLYLSAGVIASF 247
Query: 218 FYLVYHAF-------LAMSSKRQGMWVVDPSRTPALG---VFL--------------IGK 253
V+ L S G+ S+ P VFL +G
Sbjct: 248 ASHVFKTVMRQPGLSLGASGAIMGILAYVCSQYPDTQLSIVFLPMFTFSAGAAIKVIMGI 307
Query: 254 DMLRIIEGNSNISGSAHLGGA 274
D+ ++ G +AHLGGA
Sbjct: 308 DLAGVLLGWKLFDHAAHLGGA 328
>gi|336366880|gb|EGN95226.1| hypothetical protein SERLA73DRAFT_187574 [Serpula lacrymans var.
lacrymans S7.3]
gi|336379600|gb|EGO20755.1| hypothetical protein SERLADRAFT_477242 [Serpula lacrymans var.
lacrymans S7.9]
Length = 425
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 134 NTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFG 192
NT V++ W+I P+F+ + + + LSG +TL+TS FSH H+V+N + L FG
Sbjct: 185 NTVVYLAWKI--PRFVPSMNRSFMHHPLSGLSYTLLTSVFSHRSFLHLVANSMALISFG 241
>gi|227831853|ref|YP_002833560.1| Rhomboid protease glpG [Corynebacterium aurimucosum ATCC 700975]
gi|262183117|ref|ZP_06042538.1| Rhomboid protease glpG [Corynebacterium aurimucosum ATCC 700975]
gi|227452869|gb|ACP31622.1| Rhomboid protease glpG [Corynebacterium aurimucosum ATCC 700975]
Length = 214
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS 216
T+IT+ F H+D H++ NM+ L+F G + R LG + Y+ +G S
Sbjct: 58 TVITAGFMHLDAGHLLVNMVMLFFVGREVERALGSALYVVAYLISIVGSS 107
>gi|260063472|ref|YP_003196552.1| transmembrane rhomboid family protein [Robiginitalea biformata
HTCC2501]
gi|88782916|gb|EAR14090.1| putative transmembrane rhomboid family protein [Robiginitalea
biformata HTCC2501]
Length = 291
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 86/203 (42%), Gaps = 37/203 (18%)
Query: 120 QYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLD-------NFLSGRLH--TLIT 170
Q+ + LI+ N AVF+++ +A F+ N SL+ +F + +L+T
Sbjct: 9 QFARLSIAEKLIVINLAVFIVFGLAG--FLLNLPGRSLEQWFELPKDFFDFLVQPWSLVT 66
Query: 171 SAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAI-GGSVFYLVYHAF---- 225
+F H + HI NM+ LY+ G GP + +Y G I GG+ F Y+ F
Sbjct: 67 YSFLHGGLFHIFFNMLMLYYVGRIFLNFYGPRRFINVYFLGVILGGAFFLAAYNIFPVFY 126
Query: 226 ------LAMSSKRQGMWVVDPSRTPA--------------LGVFLIGKDMLRIIEGNSNI 265
+ S+ + + + P +G F + D++ I G++
Sbjct: 127 QSQSPLIGASAGVMAVLIFVCTYLPQQEVRLFFFNLKLWYIGAFFVLLDLVLIPTGDNPG 186
Query: 266 SGSAHLGGAAVAALAWARIRRRG 288
AHLGGA + L +AR +G
Sbjct: 187 GRIAHLGGALLGYL-YARRSAQG 208
>gi|404212656|ref|YP_006666831.1| putative membrane protein [Gordonia sp. KTR9]
gi|403643455|gb|AFR46695.1| putative membrane protein [Gordonia sp. KTR9]
Length = 237
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 10/115 (8%)
Query: 128 YGLIIANTAVFMLW----RIADPK----FMANNFTISLDNFLSGRLHTLITSAFSHIDVE 179
Y LI N VF L + DP F A + S + SG L+T+ F H V
Sbjct: 15 YALIAVNLLVFALCVLQSGVGDPGGASIFSAGDLLKS--DVASGEYWRLLTAGFLHFSVM 72
Query: 180 HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQG 234
H+ NM+ LY G + LG L +Y +GGS +++ A+++ G
Sbjct: 73 HVAVNMLSLYILGRDLELALGIGRYLAVYGIALLGGSAAVMLFEDDRALTAGASG 127
>gi|336430826|ref|ZP_08610764.1| hypothetical protein HMPREF0994_06770 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336016582|gb|EGN46362.1| hypothetical protein HMPREF0994_06770 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 209
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
S + L+T+ F H D+ H+V+NMI LYF G + +T+G L L+ I G++ +
Sbjct: 56 SQEYYRLVTAMFLHADISHLVNNMILLYFGGEIVEKTIGSVRYLVLFFVSGICGNLLTAI 115
Query: 222 YHAFLAM 228
+ M
Sbjct: 116 FEVSTGM 122
>gi|126438092|ref|YP_001073783.1| rhomboid family protein [Mycobacterium sp. JLS]
gi|126237892|gb|ABO01293.1| Rhomboid family protein [Mycobacterium sp. JLS]
Length = 289
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM 185
V Y LI N VF++ + + F + G + L TSAF H H++ NM
Sbjct: 78 VTYALIAVNVLVFLMQTTSGQ--LEREFVLWTPGVADGEWYRLATSAFLHYGAMHLLFNM 135
Query: 186 IGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
LY G + LG LY A+GGSV LVY
Sbjct: 136 WALYVVGPPLEMWLGRLRFGALYALSALGGSV--LVY 170
>gi|404448304|ref|ZP_11013297.1| hypothetical protein A33Q_03170 [Indibacter alkaliphilus LW1]
gi|403765925|gb|EJZ26800.1| hypothetical protein A33Q_03170 [Indibacter alkaliphilus LW1]
Length = 310
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 35/57 (61%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
++++ F H + HI+ NM+ LY+FG+ + LG L LY+ G + G+V Y++ +
Sbjct: 72 SILSYMFFHEGIFHILFNMLFLYWFGLLVNEYLGSRKLANLYILGGLAGAVLYVIMY 128
>gi|402298353|ref|ZP_10818053.1| rhomboid protein membrane-associated serine peptidase [Bacillus
alcalophilus ATCC 27647]
gi|401726454|gb|EJS99682.1| rhomboid protein membrane-associated serine peptidase [Bacillus
alcalophilus ATCC 27647]
Length = 519
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 76/181 (41%), Gaps = 13/181 (7%)
Query: 44 SKHPFHPTFSWRSQQSLSLKTHAFLFNPLLARRFFTSLL--SSQLRKSFFDGKVLFFRAQ 101
K H +F ++ +++ A L LL F S L +L D K++ + +
Sbjct: 113 KKTVVHTSFIFQDEKT----QGAVLSERLLQSGFLLSNLPVDGELEPMQLDAKMVALKYE 168
Query: 102 FPERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRI-ADPKFMANNFTISLDN- 159
+ +A + + L +G V Y L++ N +F+L + D + + +
Sbjct: 169 L--KLYADKKKKEEKELFSFGKPMVTYALLVMNVFIFILIELYGDSESILTLVEVGAKYS 226
Query: 160 --FLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIGGS 216
L G +ITS F HI H++ N + LYF G + R G ++ + AG IG
Sbjct: 227 PLILDGEWWRIITSMFIHIGFLHLLMNSLALYFLGTLVERIYGSFRFVFIYFTAGVIGTL 286
Query: 217 V 217
V
Sbjct: 287 V 287
>gi|240274127|gb|EER37645.1| rhomboid family protein [Ajellomyces capsulatus H143]
Length = 638
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADPKF-MANNFTISLDNFLSGRLHTLITSAFSHIDVEHI 181
++ V GLI N ++ +WR P + M N + IS+ L ++I S FSH + H+
Sbjct: 416 AAATVIGLIGTNVLIYAMWRTVPPAWRMLNRYFISVP--LYPYSISIIGSIFSHQQIRHL 473
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+NM+ L+F G + LG L LY + S+ L H
Sbjct: 474 GANMLILWFIGTRLHEELGRADFLSLYFSSGAIASLTSLAAHVL 517
>gi|374340237|ref|YP_005096973.1| hypothetical protein Marpi_1272 [Marinitoga piezophila KA3]
gi|372101771|gb|AEX85675.1| putative membrane protein [Marinitoga piezophila KA3]
Length = 235
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 22/150 (14%)
Query: 150 ANNFTISLDNFLSGRLHTL-------ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPE 202
+N++T+ + G+L T+ IT+ F H + HI N+ LY+ G + R GP
Sbjct: 39 SNSYTLIVAGAQYGKLITIYHQYFRFITALFVHGGILHISFNLYALYYLGNIVERVYGPY 98
Query: 203 YLLKLYMAGAIGGSVFYLVY----------HAFLAMSSKRQGMWVVD---PSRTPALGVF 249
L +Y+A IGG + ++ A + G D P P G
Sbjct: 99 KFLTIYLASGIGGGILTQIFIPNAFSVGASGAIFGLIGLLFGAGFRDDTPPMLKPMTGTA 158
Query: 250 LIGKDMLRIIEG--NSNISGSAHLGGAAVA 277
L+ ++ + G +S I+ AH+GG V
Sbjct: 159 LLPVILINLFLGFTSSGINNFAHIGGLLVG 188
>gi|294790177|ref|ZP_06755335.1| rhomboid family protein [Scardovia inopinata F0304]
gi|294458074|gb|EFG26427.1| rhomboid family protein [Scardovia inopinata F0304]
Length = 266
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Query: 110 FRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIA---DPKFM-ANNFTISL-DNFLSGR 164
+RY W +G + LI T ++++ IA +P+ + L +F+S
Sbjct: 37 WRYDW-----NHGGRNITLVLIAICTLIWLIEEIAYFINPQALRVAEIPFELVPSFVSSH 91
Query: 165 LHTLITSAFSHI--DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
T++TS F H + HI NM+ LY G+ + + LG L L++ GGSV Y+++
Sbjct: 92 PWTMLTSIFLHSVPGITHIFFNMVSLYIGGIVLEKLLGHWEFLALFLISGFGGSVSYMIW 151
>gi|281421497|ref|ZP_06252496.1| rhomboid family protein [Prevotella copri DSM 18205]
gi|281404569|gb|EFB35249.1| rhomboid family protein [Prevotella copri DSM 18205]
Length = 312
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTIS----LDNFLSGRLHT--LITSAFSHIDVE 179
V L+I N F+ + D K M ++ L FL+ H L+T F H +
Sbjct: 7 VTKNLLIVNVVAFLACMLMD-KSMGGGSGLTDMFGLHFFLASDFHIYQLVTYMFMHGGFQ 65
Query: 180 HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
HI+ NM L+ FG + R GP+ L Y+ +G +F
Sbjct: 66 HILFNMFALWMFGCVVERVWGPKKFLFYYIVCGVGAGLF 104
>gi|228478048|ref|ZP_04062659.1| membrane-associated serine protease [Streptococcus salivarius
SK126]
gi|228250228|gb|EEK09481.1| membrane-associated serine protease [Streptococcus salivarius
SK126]
Length = 224
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
L+T F HI VEH + NM+ LYF G + G L LY+ + G+ F L++
Sbjct: 61 LVTPIFVHIGVEHFLFNMLALYFMGKMAEQIFGTLRFLGLYLLAGVMGNAFTLLF 115
>gi|395855395|ref|XP_003800148.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like [Otolemur garnettii]
Length = 154
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 12/108 (11%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYM-AGAIGGSVFYLVYHAFL 226
++ S FSH + H+ +NM L+ F SI LG E + +Y+ AG I V Y+
Sbjct: 18 MLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQFMAVYLSAGVISNFVSYVC----- 72
Query: 227 AMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEGNSNISGSAHLGGA 274
+++ R G PS AL +I D + +I G +AHLGGA
Sbjct: 73 KVATGRYG-----PSLGAALKA-IIAMDTVGMILGWKFFDHAAHLGGA 114
>gi|389610057|dbj|BAM18640.1| rhomboid-7 [Papilio xuthus]
Length = 347
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 5/115 (4%)
Query: 113 RWRSWLRQYGSSEVVYGLIIANTAVFMLWRIAD-PKFMANNFTISLDNFLSGRLHTLITS 171
+W + LR S +V Y + AN VF WRI FM F + + + ++ S
Sbjct: 132 KWWNSLRP--SDKVFYPIFAANLLVFGAWRIRSLHPFMIKYFCSNPGG--AAKCIPMVLS 187
Query: 172 AFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
FSH H+ +NM LY F + +LG E + +Y++ + S ++Y L
Sbjct: 188 TFSHYSPFHLAANMYVLYSFMPAAVASLGKEQFVAMYLSAGVISSFASVLYKVLL 242
>gi|338975122|ref|ZP_08630477.1| integral membrane protein [Bradyrhizobiaceae bacterium SG-6C]
gi|338231721|gb|EGP06856.1| integral membrane protein [Bradyrhizobiaceae bacterium SG-6C]
Length = 256
Score = 41.2 bits (95), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 161 LSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL 220
+ + T +T AF H D+ HI NM+ + FG ++ R G + AI G+V +L
Sbjct: 67 VGAEIWTFLTYAFLHADITHIAFNMLWMLPFGSAVARRFGTVRFFAFFAVTAIAGAVAHL 126
Query: 221 VYH 223
V H
Sbjct: 127 VTH 129
>gi|260579595|ref|ZP_05847464.1| membrane protein [Corynebacterium jeikeium ATCC 43734]
gi|258602236|gb|EEW15544.1| membrane protein [Corynebacterium jeikeium ATCC 43734]
Length = 214
Score = 41.2 bits (95), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 12/93 (12%)
Query: 137 VFMLWRIADPKFMANNFTISLDNF------------LSGRLHTLITSAFSHIDVEHIVSN 184
VF IA+P + F +SL+N L G ++T+AF H+D H+ N
Sbjct: 6 VFQSGSIANPLGGQSMFGLSLNNLGREMLFNAANVTLFGEWWRILTAAFVHLDPAHLGFN 65
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
M+ ++ G + R GP +L L +A A GG++
Sbjct: 66 MLLIFLIGRDVERFYGPVVMLSLIVASAAGGAL 98
>gi|418920630|ref|ZP_13474562.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC348]
gi|377764356|gb|EHT88209.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC348]
Length = 370
Score = 41.2 bits (95), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
N + G + ++TS F H EHI+ NM+ L+ FG + +G +L +Y + G+
Sbjct: 79 NVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFV 138
Query: 219 YLVYHA-----------FLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG----NS 263
L ++ F + S M+V LG LI L I+ G S
Sbjct: 139 SLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIA---LVILVGVSLFMS 195
Query: 264 NISGSAHLGG 273
NI+ AH+GG
Sbjct: 196 NINIVAHIGG 205
>gi|301300052|ref|ZP_07206273.1| peptidase, S54 family [Lactobacillus salivarius ACS-116-V-Col5a]
gi|300852350|gb|EFK80013.1| peptidase, S54 family [Lactobacillus salivarius ACS-116-V-Col5a]
Length = 220
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 12/101 (11%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNF--------LSGRLHTLITSAFSHI 176
+ Y LII N ++++ + F ++L F ++G+ LIT F HI
Sbjct: 10 SITYTLIILNIVMYIIMTL----FGGTENIVNLVRFGAKYSPYIINGQYWRLITPMFIHI 65
Query: 177 DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
++H++ NMI LYF G + G L +Y+ I G++
Sbjct: 66 GLQHLLINMITLYFLGTLLENIFGKTRFLIIYLVSGICGNI 106
>gi|339000139|ref|ZP_08638761.1| serine protease GlpG [Halomonas sp. TD01]
gi|338763014|gb|EGP18024.1| serine protease GlpG [Halomonas sp. TD01]
Length = 283
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 28/143 (19%)
Query: 158 DNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIG--- 214
D +SG++ L++ AF H H++ N++ +++FG I + G +L L M IG
Sbjct: 132 DTIMSGQVWRLLSPAFLHFGWMHLIFNLMWVWYFGRQIEQLQGSRTMLLLLMVAGIGANL 191
Query: 215 --------------GSVFYLVYHAFL-AMSSKRQGMWVVDPSRTPALGVFLIGKDMLRII 259
G V+ L+ H +L + + + G +V L VF++G + +
Sbjct: 192 AQYVTGTVLFGGMSGVVYALLAHVWLMSYRAPKSGFFV-----PQMLVVFMLGWMVFTMT 246
Query: 260 E-----GNSNISGSAHLGGAAVA 277
+ G N++ AHLGG V
Sbjct: 247 DIAGSVGFGNVANEAHLGGLLVG 269
>gi|312862457|ref|ZP_07722700.1| peptidase, S54 family [Streptococcus vestibularis F0396]
gi|311102100|gb|EFQ60300.1| peptidase, S54 family [Streptococcus vestibularis F0396]
Length = 224
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
L+T F HI VEH + NM+ LYF G + G L LY+ + G+ F L++
Sbjct: 61 LVTPIFVHIGVEHFLFNMLALYFMGKMAEQIFGTLRFLGLYLLAGVMGNAFTLLF 115
>gi|116331862|ref|YP_801580.1| intramembrane protease [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
gi|116125551|gb|ABJ76822.1| Intramembrane protease [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
Length = 197
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
+TLITS F H D H++ NMI Y FG ++ T+GP L Y+ + SV
Sbjct: 41 YTLITSGFIHADWMHLIFNMISFYSFGKNLETTVGPVKFLLFYLGTILITSV 92
>gi|418952134|ref|ZP_13504176.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-160]
gi|375369792|gb|EHS73653.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-160]
Length = 303
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
N + G + ++TS F H EHI+ NM+ L+ FG + +G +L +Y + G+
Sbjct: 135 NVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFV 194
Query: 219 YLVYHA-----------FLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEG----NS 263
L ++ F + S M+V LG LI L I+ G S
Sbjct: 195 SLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTFNKKMLGQLLIS---LVILVGVSLFMS 251
Query: 264 NISGSAHLGG 273
NI+ AH+GG
Sbjct: 252 NINIVAHIGG 261
>gi|238061764|ref|ZP_04606473.1| rhomboid family protein [Micromonospora sp. ATCC 39149]
gi|237883575|gb|EEP72403.1| rhomboid family protein [Micromonospora sp. ATCC 39149]
Length = 303
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 156 SLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGG 215
S+ + G + L+T+ F H V H++ NM L+ G S+ LGP L LY+ GG
Sbjct: 130 SVHGIVQGEWYRLVTAMFLHYGVVHLLLNMWALWVLGRSLEANLGPLRFLALYLIAGFGG 189
Query: 216 SVFYLVYHA 224
+V ++ A
Sbjct: 190 NVAAYLFSA 198
>gi|423341150|ref|ZP_17318865.1| hypothetical protein HMPREF1077_00295 [Parabacteroides johnsonii
CL02T12C29]
gi|409222650|gb|EKN15590.1| hypothetical protein HMPREF1077_00295 [Parabacteroides johnsonii
CL02T12C29]
Length = 292
Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 84/206 (40%), Gaps = 39/206 (18%)
Query: 119 RQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFT----------ISLDNFLSGRLHTL 168
R + S ++ LI N +F++ R+ M N + S L R T+
Sbjct: 10 RTFNSGNILAKLIYINVGLFVIIRLTSVILMLFNLSGFPFLQYLQVPSSPELLLYRPWTI 69
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV-YHAF-- 225
IT F+H D HI+ NM+ LY+FG L LY+ G I G+V +LV Y+ F
Sbjct: 70 ITYMFTHFDFLHILFNMLWLYWFGGLFLTFFSERQLGGLYLLGGIAGAVLFLVAYNIFPY 129
Query: 226 --------LAMSSKRQGMWVVDP----SRTPALGVFLIGK-------------DMLRIIE 260
M + M +V + +G+FLIG+ D+L I
Sbjct: 130 FRTVAAYSYLMGASASVMAIVFAVSFYRKDLEIGLFLIGRIKLIYLALFTFVIDLLAITS 189
Query: 261 GNSNISGSAHLGGAAVAALAWARIRR 286
N+ AH+GGA ARI+
Sbjct: 190 TNAG-GHIAHIGGALFGIWFAARIKE 214
>gi|225557758|gb|EEH06043.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 540
Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADPKF-MANNFTISLDNFLSGRLHTLITSAFSHIDVEHI 181
++ V GLI N ++ +WR P + M N + IS+ L ++I S FSH + H+
Sbjct: 318 AAATVIGLISTNVLIYAMWRAVPPAWRMLNRYFISVP--LYPYSISIIGSIFSHQQIRHL 375
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+NM+ L+F G + LG L LY + S+ L H
Sbjct: 376 GANMLILWFIGTRLHEELGRADFLSLYFSSGAIASLTSLAAHVL 419
>gi|395803839|ref|ZP_10483081.1| rhomboid family protein [Flavobacterium sp. F52]
gi|395433958|gb|EJF99909.1| rhomboid family protein [Flavobacterium sp. F52]
Length = 212
Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 21/134 (15%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
SG +++S F H+D+ H++ NM+ LYFF + LG + +Y I GS+ ++
Sbjct: 38 SGEQIRMLSSGFLHVDMMHLIFNMLTLYFFAPVVLGWLGNFSFILVYFGSLIFGSLLTML 97
Query: 222 YH---------------------AFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIE 260
+H A L G++ V P G+ + + +
Sbjct: 98 FHKNDYSYRAVGASGAVTGVLYSAILLEPDMMLGIFYVIPMPAYLFGILYLLYSIYGMKA 157
Query: 261 GNSNISGSAHLGGA 274
N NI +AH GGA
Sbjct: 158 KNDNIGHTAHFGGA 171
>gi|387784951|ref|YP_006071034.1| hypothetical protein SALIVA_1904 [Streptococcus salivarius JIM8777]
gi|338745833|emb|CCB96199.1| conserved hypothetical, predicted membrane protein (TSM6)
[Streptococcus salivarius JIM8777]
Length = 224
Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
L+T F HI VEH + NM+ LYF G + G L LY+ + G+ F L++
Sbjct: 61 LVTPIFVHIGVEHFLFNMLALYFMGKMAEQIFGTLRFLGLYLLAGVMGNAFTLLF 115
>gi|167748326|ref|ZP_02420453.1| hypothetical protein ANACAC_03070 [Anaerostipes caccae DSM 14662]
gi|167652318|gb|EDR96447.1| peptidase, S54 family [Anaerostipes caccae DSM 14662]
Length = 280
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 9/116 (7%)
Query: 109 SFRYRWRSWLRQYGSSEVVYGLIIANTAVFM-LWRIADPKFMANNFTISLDNFLSGRLHT 167
FR+R L+ Y ++ V I +FM LW A + + + F G L+
Sbjct: 88 EFRFRK---LKDYQATAV-----ILTINIFMYLWSAASTEILNWGALTWMHAFKQGELYR 139
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
L+TS F H +H+ +NMI G + G + LYM + GS+ VY+
Sbjct: 140 LVTSNFLHNGFDHLFNNMIVFVLIGSRLEPIFGRARYVALYMGAGLCGSIVSAVYY 195
>gi|365966758|ref|YP_004948320.1| GlpG protein [Aggregatibacter actinomycetemcomitans ANH9381]
gi|416082991|ref|ZP_11586734.1| GlpG protein [Aggregatibacter actinomycetemcomitans serotype b str.
I23C]
gi|444348137|ref|ZP_21155867.1| GlpG protein [Aggregatibacter actinomycetemcomitans serotype b str.
S23A]
gi|348010700|gb|EGY50725.1| GlpG protein [Aggregatibacter actinomycetemcomitans serotype b str.
I23C]
gi|365745671|gb|AEW76576.1| GlpG protein [Aggregatibacter actinomycetemcomitans ANH9381]
gi|443547666|gb|ELT57122.1| GlpG protein [Aggregatibacter actinomycetemcomitans serotype b str.
S23A]
Length = 291
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM 185
V+ + A +FML+ A+P + ++F D + G + + H+ HI+ N+
Sbjct: 113 VIVTALCALIYLFMLFGFAEPIVLFSHFPDEADQY--GEIWRYFSHTLVHLSNMHILFNL 170
Query: 186 IGLYFFGMSIGRTLGPEYLLKLY-MAGAIGG 215
+ FG +I R LG LL++Y +AGA+GG
Sbjct: 171 TWWWIFGGAIERRLGSFKLLQIYFLAGAVGG 201
>gi|386336259|ref|YP_006032429.1| Integral membrane protein (Rhomboid family) [Ralstonia solanacearum
Po82]
gi|334198709|gb|AEG71893.1| Integral membrane protein (Rhomboid family) [Ralstonia solanacearum
Po82]
Length = 197
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 65/152 (42%), Gaps = 38/152 (25%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMA----------------- 210
L+T AF H V H+V NM G++ FG + RTLG LY+A
Sbjct: 48 LLTYAFLHASVPHLVFNMFGMFMFGRDVERTLGRVRTGVLYVASVLSAAFTQIAVMGLST 107
Query: 211 -------GAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEGNS 263
GA GG VF L+ A+ + +R + + P PA + + +IE
Sbjct: 108 IPAGPIVGASGG-VFGLLL-AYAVLFPRRMILLLFPPIPMPA----WLFATVYALIELTL 161
Query: 264 NISGS-------AHLGG-AAVAALAWARIRRR 287
+SGS AHLGG A L W +RRR
Sbjct: 162 GLSGSAGHIAHFAHLGGMAGSGVLLWRWLRRR 193
>gi|384099337|ref|ZP_10000423.1| hypothetical protein W5A_11646 [Imtechella halotolerans K1]
gi|383832685|gb|EID72155.1| hypothetical protein W5A_11646 [Imtechella halotolerans K1]
Length = 215
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
+ +S F H+D H++ NM+ LYFF + + LG + +Y+A I GS+F L +H
Sbjct: 46 MFSSGFLHVDTAHLLFNMLTLYFFANVVIQDLGAFKFILVYVASLIIGSLFSLFFH 101
>gi|416073271|ref|ZP_11584159.1| GlpG protein [Aggregatibacter actinomycetemcomitans serotype b str.
SCC1398]
gi|444337908|ref|ZP_21151826.1| GlpG protein [Aggregatibacter actinomycetemcomitans serotype b str.
SCC4092]
gi|348007395|gb|EGY47710.1| GlpG protein [Aggregatibacter actinomycetemcomitans serotype b str.
SCC1398]
gi|443546028|gb|ELT55741.1| GlpG protein [Aggregatibacter actinomycetemcomitans serotype b str.
SCC4092]
Length = 291
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM 185
V+ + A +FML+ A+P + ++F D + G + + H+ HI+ N+
Sbjct: 113 VIVTALCALIYLFMLFGFAEPIVLFSHFPDEADQY--GEIWRYFSHTLVHLSNMHILFNL 170
Query: 186 IGLYFFGMSIGRTLGPEYLLKLY-MAGAIGG 215
+ FG +I R LG LL++Y +AGA+GG
Sbjct: 171 TWWWIFGGAIERRLGSFKLLQIYFLAGAVGG 201
>gi|261866947|ref|YP_003254869.1| GlpG protein [Aggregatibacter actinomycetemcomitans D11S-1]
gi|415771077|ref|ZP_11485207.1| GlpG protein [Aggregatibacter actinomycetemcomitans D17P-2]
gi|416108162|ref|ZP_11590958.1| GlpG protein [Aggregatibacter actinomycetemcomitans serotype c str.
SCC2302]
gi|444345509|ref|ZP_21153523.1| GlpG protein [Aggregatibacter actinomycetemcomitans serotype c str.
AAS4A]
gi|261412279|gb|ACX81650.1| GlpG protein [Aggregatibacter actinomycetemcomitans D11S-1]
gi|348004546|gb|EGY45048.1| GlpG protein [Aggregatibacter actinomycetemcomitans serotype c str.
SCC2302]
gi|348656451|gb|EGY74066.1| GlpG protein [Aggregatibacter actinomycetemcomitans D17P-2]
gi|443542840|gb|ELT53135.1| GlpG protein [Aggregatibacter actinomycetemcomitans serotype c str.
AAS4A]
Length = 291
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM 185
V+ + A +FML+ A+P + ++F D + G + + H+ HI+ N+
Sbjct: 113 VIVTALCALIYLFMLFGFAEPIVLFSHFPDEADQY--GEIWRYFSHTLVHLSNMHILFNL 170
Query: 186 IGLYFFGMSIGRTLGPEYLLKLY-MAGAIGG 215
+ FG +I R LG LL++Y +AGA+GG
Sbjct: 171 TWWWIFGGAIERRLGSFKLLQIYFLAGAVGG 201
>gi|325095490|gb|EGC48800.1| rhomboid family protein [Ajellomyces capsulatus H88]
Length = 660
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADPKF-MANNFTISLDNFLSGRLHTLITSAFSHIDVEHI 181
++ V GLI N ++ +WR P + M N + IS+ L ++I S FSH + H+
Sbjct: 438 AAATVIGLIGTNVLIYAMWRTVPPAWRMLNRYFISVP--LYPYSISIIGSIFSHQQIRHL 495
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+NM+ L+F G + LG L LY + S+ L H
Sbjct: 496 GANMLILWFIGTRLHEELGRADFLSLYFSSGAIASLTSLAAHVL 539
>gi|82594615|ref|XP_725500.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23480529|gb|EAA17065.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 547
Score = 41.2 bits (95), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 131 IIANTAVFMLWRIADP-------KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVS 183
+IAN +F+ WR+ D FM +F S +N HT+ T+ SH+ + H +
Sbjct: 254 LIANGVIFLCWRLGDIARNKKFYNFMCRHFICSYENIKKKHYHTIFTATISHMTLPHFLF 313
Query: 184 NM 185
NM
Sbjct: 314 NM 315
>gi|451848232|gb|EMD61538.1| hypothetical protein COCSADRAFT_162980 [Cochliobolus sativus
ND90Pr]
Length = 596
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIV 182
++ + L++AN V + WRI + + + + + R +T+ FSHI EH++
Sbjct: 357 TTATIGALVVANCVVAIGWRIMPLWPLMTRYFMHVPGY--PRAIQSVTNVFSHIQYEHLL 414
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYM-AGAIG 214
+NM+ L G +G + YM AGA+G
Sbjct: 415 ANMMMLCLVGPVCCDLVGRGVFMGTYMSAGALG 447
>gi|23465179|ref|NP_695782.1| rhomboid family membrane protein [Bifidobacterium longum NCC2705]
gi|227547444|ref|ZP_03977493.1| rhomboid family membrane protein [Bifidobacterium longum subsp.
longum ATCC 55813]
gi|322688231|ref|YP_004207965.1| hypothetical protein BLIF_0040 [Bifidobacterium longum subsp.
infantis 157F]
gi|322690244|ref|YP_004219814.1| hypothetical protein BLLJ_0052 [Bifidobacterium longum subsp.
longum JCM 1217]
gi|384202422|ref|YP_005588169.1| hypothetical protein BLNIAS_02760 [Bifidobacterium longum subsp.
longum KACC 91563]
gi|419847899|ref|ZP_14371036.1| peptidase, S54 family [Bifidobacterium longum subsp. longum 1-6B]
gi|419849390|ref|ZP_14372436.1| peptidase, S54 family [Bifidobacterium longum subsp. longum 35B]
gi|419852126|ref|ZP_14375022.1| peptidase, S54 family [Bifidobacterium longum subsp. longum 2-2B]
gi|23325803|gb|AAN24418.1| conserved membrane protein in rhomboid family [Bifidobacterium
longum NCC2705]
gi|227212091|gb|EEI79987.1| rhomboid family membrane protein [Bifidobacterium longum subsp.
infantis ATCC 55813]
gi|320455100|dbj|BAJ65722.1| conserved hypothetical protein [Bifidobacterium longum subsp.
longum JCM 1217]
gi|320459567|dbj|BAJ70187.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis 157F]
gi|338755429|gb|AEI98418.1| hypothetical protein BLNIAS_02760 [Bifidobacterium longum subsp.
longum KACC 91563]
gi|386409317|gb|EIJ24179.1| peptidase, S54 family [Bifidobacterium longum subsp. longum 1-6B]
gi|386411745|gb|EIJ26457.1| peptidase, S54 family [Bifidobacterium longum subsp. longum 2-2B]
gi|386411928|gb|EIJ26627.1| peptidase, S54 family [Bifidobacterium longum subsp. longum 35B]
Length = 281
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 109 SFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNF-------L 161
RY+W + G + + LI+A AV++L + F+A L L
Sbjct: 39 EIRYQW-----ERGGPVMTWALIVACVAVWLLEVLLG--FIAPGLRAWLMYLGMAAPVRL 91
Query: 162 SGRLHTLITSAFSHI--DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFY 219
TLITS F H + HI+ NMI LY G + R +G L LY+ +GGS+
Sbjct: 92 VAEPWTLITSMFLHAPNSLLHILFNMIALYSVGPVLERMIGHWRFLGLYVISGLGGSLGL 151
Query: 220 LVYHA 224
+V+ A
Sbjct: 152 MVWAA 156
>gi|403714833|ref|ZP_10940699.1| rhomboid family protein [Kineosphaera limosa NBRC 100340]
gi|403211161|dbj|GAB95382.1| rhomboid family protein [Kineosphaera limosa NBRC 100340]
Length = 213
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 52/106 (49%), Gaps = 12/106 (11%)
Query: 169 ITSAFSHIDV--EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
+TSAF H HI+ NM+ L+ G + LG L LY+ A+GGSV YL+ +
Sbjct: 30 LTSAFLHSPTMFAHILFNMLCLWSIGQWLEPMLGWARFLTLYLVSALGGSVGYLLLASPP 89
Query: 227 AMSSKRQGMWVVDPSRTPALG----VF-LIGKDMLRIIEGNSNISG 267
++ G WV TP +G VF L G ML + S++ G
Sbjct: 90 QNWAEMGGAWV-----TPMVGASGAVFGLFGATMLFLRHSGSSVRG 130
>gi|294813767|ref|ZP_06772410.1| Putative membrane protein [Streptomyces clavuligerus ATCC 27064]
gi|326442188|ref|ZP_08216922.1| hypothetical protein SclaA2_14039 [Streptomyces clavuligerus ATCC
27064]
gi|294326366|gb|EFG08009.1| Putative membrane protein [Streptomyces clavuligerus ATCC 27064]
Length = 301
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 12/103 (11%)
Query: 130 LIIANTAVFMLWRIADPKFMAN------NFTISLDNFLSGRLHT----LITSAFSHIDVE 179
LI N AVF L +F++ F+ L + G H L+T+ F H ++
Sbjct: 94 LIGLNVAVFALVLSLGERFVSQLELIGYAFSPQLGEIV-GVAHDQWYRLLTAVFLHQELS 152
Query: 180 HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF-YLV 221
HI+ N++GL+F G + LG L LY+ +GGS YLV
Sbjct: 153 HILFNLLGLWFLGRMVEPALGRRRFLALYLLSGLGGSTLAYLV 195
>gi|417942695|ref|ZP_12585960.1| Peptidase, S54 family [Bifidobacterium breve CECT 7263]
gi|376166735|gb|EHS85623.1| Peptidase, S54 family [Bifidobacterium breve CECT 7263]
Length = 246
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 24/127 (18%)
Query: 109 SFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFL--SGRL- 165
RY+W ++G + + LI A TAV+++ + + + +L N+L G L
Sbjct: 8 EIRYQW-----EHGGPVMTWALIAACTAVWLV------EVLLGFLSPTLQNWLIYRGMLA 56
Query: 166 --------HTLITSAFSHI--DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGG 215
++TS F H + HI+ NMI LY G + R +G L LYM +GG
Sbjct: 57 PATMLAEPWAIVTSMFLHAPNSILHILFNMIALYSVGPVLERLIGHWRFLGLYMISGLGG 116
Query: 216 SVFYLVY 222
++ +V+
Sbjct: 117 ALGMMVW 123
>gi|384196250|ref|YP_005581994.1| peptidase, S54 family [Bifidobacterium breve ACS-071-V-Sch8b]
gi|333110956|gb|AEF27972.1| peptidase, S54 family [Bifidobacterium breve ACS-071-V-Sch8b]
Length = 246
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 24/127 (18%)
Query: 109 SFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFL--SGRL- 165
RY+W ++G + + LI A TAV+++ + + + +L N+L G L
Sbjct: 8 EIRYQW-----EHGGPVMTWALIAACTAVWLV------EVLLGFLSPTLQNWLIYRGMLA 56
Query: 166 --------HTLITSAFSHI--DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGG 215
++TS F H + HI+ NMI LY G + R +G L LYM +GG
Sbjct: 57 PATMLAEPWAIVTSMFLHAPNSILHILFNMIALYSVGPVLERLIGHWRFLGLYMISGLGG 116
Query: 216 SVFYLVY 222
++ +V+
Sbjct: 117 ALGMMVW 123
>gi|329964253|ref|ZP_08301354.1| peptidase, S54 family [Bacteroides fluxus YIT 12057]
gi|328525558|gb|EGF52601.1| peptidase, S54 family [Bacteroides fluxus YIT 12057]
Length = 297
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 29/136 (21%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH--- 223
+++T F H + HI+ NM+ LY+FG ++L +Y+ G I G V Y++ +
Sbjct: 68 SILTYMFMHAGLMHILFNMLWLYWFGALFLNFFSSKHLRGVYILGGICGGVLYMIAYNVF 127
Query: 224 --------------------AFLAMSSKRQG-----MWVVDPSRTPALGVFLIGKDMLRI 258
A +A ++ R+ +++ R L + +IG D+L I
Sbjct: 128 PYFRPMIDYSFMLGASASVLAIVAATAYREPNYPIRLFLFGTIRLKYLALIVIGMDLLFI 187
Query: 259 IEGNSNISGSAHLGGA 274
N+ AHLGGA
Sbjct: 188 TSSNAG-GHIAHLGGA 202
>gi|325299446|ref|YP_004259363.1| Peptidase S54, rhomboid domain [Bacteroides salanitronis DSM 18170]
gi|324318999|gb|ADY36890.1| Peptidase S54, rhomboid domain [Bacteroides salanitronis DSM 18170]
Length = 298
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 57/136 (41%), Gaps = 29/136 (21%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL------ 220
TL+T F H + HI+ NM+ LY+FG +L LY+ G I G+ Y+
Sbjct: 71 TLLTYMFMHAGILHILFNMLWLYWFGRLFLGFFSARHLRGLYVLGGIAGAALYMLAYNLF 130
Query: 221 ------VYHAF-LAMSSKRQGMWVVDPSRTPA---------------LGVFLIGKDMLRI 258
VY ++ L S+ + V R P + VF++ D+L +
Sbjct: 131 PYFEDAVYSSYLLGASASVLAIVVATAVREPDYPVQFMFIGTVRLKYVAVFMVALDLLFM 190
Query: 259 IEGNSNISGSAHLGGA 274
N+ AHLGGA
Sbjct: 191 TADNAG-GHLAHLGGA 205
>gi|296453230|ref|YP_003660373.1| rhomboid family protein [Bifidobacterium longum subsp. longum
JDM301]
gi|296182661|gb|ADG99542.1| Rhomboid family protein [Bifidobacterium longum subsp. longum
JDM301]
Length = 284
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 109 SFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNF-------L 161
RY+W + G + + LI+A AV++L + F+A L L
Sbjct: 42 EIRYQW-----ERGGPVMTWALIVACVAVWLLEVLLG--FIAPGLRAWLMYLGMAAPVRL 94
Query: 162 SGRLHTLITSAFSHI--DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFY 219
TLITS F H + HI+ NMI LY G + R +G L LY+ +GGS+
Sbjct: 95 VAEPWTLITSMFLHAPNSLLHILFNMIALYSVGPVLERMIGHWRFLGLYVISGLGGSLGL 154
Query: 220 LVYHA 224
+V+ A
Sbjct: 155 MVWAA 159
>gi|418738312|ref|ZP_13294708.1| peptidase, S54 family [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
gi|410746486|gb|EKQ99393.1| peptidase, S54 family [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
Length = 197
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
+TLITS F H D H++ NMI Y FG ++ T+GP L Y+ + SV
Sbjct: 41 YTLITSGFIHADWMHLIFNMISFYSFGKNLETTVGPIKFLLFYLGTILITSV 92
>gi|418327645|ref|ZP_12938790.1| peptidase, S54 family [Staphylococcus epidermidis 14.1.R1.SE]
gi|365232769|gb|EHM73752.1| peptidase, S54 family [Staphylococcus epidermidis 14.1.R1.SE]
Length = 234
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 30/173 (17%)
Query: 124 SEVVYGLIIANTAVFM-----LWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDV 178
+ + Y LI+ N +++ L R +D K + + N + G + LI+S F H +
Sbjct: 32 TPITYTLILINIVIWLCMILYLNRFSDVKLLEVGGLVHF-NVVHGEWYRLISSMFLHFNF 90
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAI------------------GGSVFYL 220
EHI+ NM+ L+ FG + +G +L +Y+ + G++F L
Sbjct: 91 EHILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTSTISVGASGAIFGL 150
Query: 221 VYHAFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEGNSNISGSAHLGG 273
+ F+ M + + AL V LIG + SNI+ AHLGG
Sbjct: 151 IGSIFVIMYLSKNFNKKMIGQLLIAL-VVLIGFSLFM-----SNINIMAHLGG 197
>gi|325913985|ref|ZP_08176341.1| uncharacterized membrane protein [Xanthomonas vesicatoria ATCC
35937]
gi|325539754|gb|EGD11394.1| uncharacterized membrane protein [Xanthomonas vesicatoria ATCC
35937]
Length = 202
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 54/138 (39%), Gaps = 35/138 (25%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLG----------------------PEYL- 204
L+T F H DV H+V NMI L+FFG I + P YL
Sbjct: 43 LVTYGFIHADVGHLVFNMITLFFFGRVIENVMTQLTGSMLTYPLFYLAALVVSILPSYLK 102
Query: 205 -------LKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLR 257
L L +GA+ +F AF+ + + + P+ VF +G +
Sbjct: 103 NQNNPNYLSLGASGAVSAVLF-----AFILLQPWTIILVLFIPAPAIIYAVFYVGYSLWM 157
Query: 258 IIEGNSNISGSAHLGGAA 275
G I+ SAHL GAA
Sbjct: 158 DRRGGDRINHSAHLAGAA 175
>gi|419854227|ref|ZP_14377016.1| peptidase, S54 family [Bifidobacterium longum subsp. longum 44B]
gi|386417921|gb|EIJ32391.1| peptidase, S54 family [Bifidobacterium longum subsp. longum 44B]
Length = 284
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 109 SFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNF-------L 161
RY+W + G + + LI+A AV++L + F+A L L
Sbjct: 42 EIRYQW-----ERGGPVMTWALIVACVAVWLLEVLLG--FIAPGLRAWLMYLGMAAPVRL 94
Query: 162 SGRLHTLITSAFSHI--DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFY 219
TLITS F H + HI+ NMI LY G + R +G L LY+ +GGS+
Sbjct: 95 VAEPWTLITSMFLHAPNSLLHILFNMIALYSVGPVLERMIGHWRFLGLYVISGLGGSLGL 154
Query: 220 LVYHA 224
+V+ A
Sbjct: 155 MVWAA 159
>gi|160901697|ref|YP_001567278.1| rhomboid family protein [Petrotoga mobilis SJ95]
gi|160359341|gb|ABX30955.1| Rhomboid family protein [Petrotoga mobilis SJ95]
Length = 226
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 61/145 (42%), Gaps = 23/145 (15%)
Query: 153 FTISLDNFLS-GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAG 211
F L N ++ G LITS F H + HI NMI L++ G + R G E + +YM
Sbjct: 38 FGAQLGNLITAGEWFRLITSMFVHGGLFHIFFNMIALFYVGNIVERAYGKERFISIYMLS 97
Query: 212 AIGGSVFYLVYHAFL--AMSSKRQGMWV--------------VDPSRTPALGVFLIGKDM 255
I G+ L+ H FL A+S G P G L+ +
Sbjct: 98 GIFGN---LLTHLFLPNAISVGASGAIFGLIGLLFGAGFRHDTPTILRPVTGTALLPIIL 154
Query: 256 LRIIEG---NSNISGSAHLGGAAVA 277
+ +I G +NI+ AHLGG +
Sbjct: 155 INVIWGFLPGANINNFAHLGGLGIG 179
>gi|453081015|gb|EMF09065.1| hypothetical protein SEPMUDRAFT_120949 [Mycosphaerella populorum
SO2202]
Length = 246
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 19/136 (13%)
Query: 98 FRAQFPERSF--ASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIA----DPKFM-- 149
FR F + S A YR W V L+ N VF W A D + +
Sbjct: 3 FRRAFNDSSLFNAQASYRSAKW--------AVGTLLFFNGGVFGAWTYARGSRDTELLRQ 54
Query: 150 -ANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRT--LGPEYLLK 206
+ T+S N +GR +T +TSAFSH ++ H NM L+ +G + +G ++
Sbjct: 55 LEEHATLSEHNLAAGRYYTYVTSAFSHKELPHFAFNMFALFTYGGLLASVPGIGALHIYG 114
Query: 207 LYMAGAIGGSVFYLVY 222
L + +I S ++ +
Sbjct: 115 LAITSSIAASAAFITH 130
>gi|418718375|ref|ZP_13277909.1| peptidase, S54 family [Leptospira borgpetersenii str. UI 09149]
gi|421092732|ref|ZP_15553464.1| peptidase, S54 family [Leptospira borgpetersenii str. 200801926]
gi|410364583|gb|EKP15604.1| peptidase, S54 family [Leptospira borgpetersenii str. 200801926]
gi|410744855|gb|EKQ93590.1| peptidase, S54 family [Leptospira borgpetersenii str. UI 09149]
gi|456889841|gb|EMG00711.1| peptidase, S54 family [Leptospira borgpetersenii str. 200701203]
Length = 197
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
+TLITS F H D H++ NMI Y FG ++ T+GP L Y+ + SV
Sbjct: 41 YTLITSGFIHADWMHLIFNMISFYSFGKNLETTVGPIKFLLFYLGTILITSV 92
>gi|423347791|ref|ZP_17325477.1| hypothetical protein HMPREF1060_03149 [Parabacteroides merdae
CL03T12C32]
gi|409215856|gb|EKN08848.1| hypothetical protein HMPREF1060_03149 [Parabacteroides merdae
CL03T12C32]
Length = 292
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 83/206 (40%), Gaps = 39/206 (18%)
Query: 119 RQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNF----------TISLDNFLSGRLHTL 168
R + S ++ LI N +F++ R+A M N S L R T+
Sbjct: 10 RTFNSGNILAKLIYINVGLFVIIRLASVILMLFNLGGFPFLQYLQVPSSPELLLYRPWTI 69
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV-YHAF-- 225
IT F+H D HI+ NM+ LY+FG L LY+ G I G+V +LV Y+ F
Sbjct: 70 ITYMFTHFDFLHILFNMLWLYWFGGLFLTFFSERQLGGLYLLGGIAGAVLFLVAYNIFPY 129
Query: 226 --------LAMSSKRQGMWVVDP----SRTPALGVFLIGK-------------DMLRIIE 260
M + M +V + +G+FLIG+ D+L I
Sbjct: 130 FRTVAAYSYLMGASASVMAIVFAVSFYRKDLEIGLFLIGRIKLIYLALFTFVIDLLAITS 189
Query: 261 GNSNISGSAHLGGAAVAALAWARIRR 286
N+ AH+GGA RI+
Sbjct: 190 TNAG-GHIAHIGGALFGIWFATRIKE 214
>gi|377809821|ref|YP_005005042.1| rhomboid family protein [Pediococcus claussenii ATCC BAA-344]
gi|361056562|gb|AEV95366.1| rhomboid family protein [Pediococcus claussenii ATCC BAA-344]
Length = 229
Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 111 RYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFT-------ISLDNFLSG 163
YR +SW + + + L+I N VF+L + NN S+ N
Sbjct: 5 NYRIKSWFQGAFVTNI---LVIVNVIVFLLMSVTGGTTNINNLIRYGAMVPESIKN--GS 59
Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
++ S F HI +EH+V NM+ LYF G + +G L Y+ + G++ L +
Sbjct: 60 DYFSIFASMFIHIGIEHLVLNMVTLYFLGRILEAIMGHWKFLATYLLAGVFGNLVSLYF 118
>gi|367043680|ref|XP_003652220.1| hypothetical protein THITE_2048425 [Thielavia terrestris NRRL 8126]
gi|346999482|gb|AEO65884.1| hypothetical protein THITE_2048425 [Thielavia terrestris NRRL 8126]
Length = 586
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADP-KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHI 181
++ V L++AN + LW+I F+ +F I + R ++++ FSH+ + H+
Sbjct: 369 AAATVGALMLANLIGWALWKIPPIWGFLNRHFIIVA---ATPRAPMMLSAVFSHVSLLHL 425
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
+ NM+ L+F G+ + +G L Y A GS+ L +
Sbjct: 426 LQNMVILWFLGVRLHDDIGRGPFLATYFASGAVGSLGMLTW 466
>gi|357412396|ref|YP_004924132.1| rhomboid family protein [Streptomyces flavogriseus ATCC 33331]
gi|320009765|gb|ADW04615.1| Rhomboid family protein [Streptomyces flavogriseus ATCC 33331]
Length = 300
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF-YL 220
G+ + L+TS F H +V HI NM+GL++ G + LG L LY+ + GS YL
Sbjct: 133 EGQWYRLVTSTFLHQEVWHIAFNMLGLWWLGGPLESALGRARYLALYLLSGLAGSALTYL 192
Query: 221 V 221
+
Sbjct: 193 I 193
>gi|433633128|ref|YP_007266755.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070017]
gi|432164721|emb|CCK62183.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070017]
Length = 249
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 119 RQYGSSEVV-YGLIIANTAVFMLWRIADPKFMANNFTISL--DNFLSGRLHTLITSAFSH 175
RQ ++ VV Y LI N VF++ M ++L SG+ + L+TSAF H
Sbjct: 31 RQRSATPVVTYTLISLNVLVFVM----QVTVMGLERQLALWPPGVASGQTYRLVTSAFLH 86
Query: 176 IDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF-YLV 221
H++ NM LY G + LG LY A+GGSV YL+
Sbjct: 87 YGAMHLLLNMWALYVVGPPLEMWLGRLRFGALYAVSALGGSVLVYLI 133
>gi|354615757|ref|ZP_09033490.1| Rhomboid family protein [Saccharomonospora paurometabolica YIM
90007]
gi|353219898|gb|EHB84403.1| Rhomboid family protein [Saccharomonospora paurometabolica YIM
90007]
Length = 311
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 97 FFRAQFPERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRI--ADP------KF 148
+ RA + R+ A R R+ + + V+ GL N A+F+L + +DP +F
Sbjct: 73 YRRAGYGARTVAGARVADRALV-----TPVLIGL---NAAIFVLTALLASDPLQNHLSRF 124
Query: 149 MANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLY 208
A+ +L G L TS F H + H+ NM+ L+F G + LG L LY
Sbjct: 125 FADGTMQTLAVAYEGEWWRLFTSGFLHYGLVHLGMNMLVLWFLGRDVELLLGKVRFLTLY 184
Query: 209 MAGAIGGSV 217
+ GSV
Sbjct: 185 FVAMLAGSV 193
>gi|420150706|ref|ZP_14657863.1| peptidase, S54 family [Capnocytophaga sp. oral taxon 335 str.
F0486]
gi|394751798|gb|EJF35543.1| peptidase, S54 family [Capnocytophaga sp. oral taxon 335 str.
F0486]
Length = 208
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 69/169 (40%), Gaps = 20/169 (11%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
+ + +I+ T + +P F N + ++ G L++S F H + EH++ N
Sbjct: 2 NITFIIILLATIAMSYYGFKNPTFF-NRYKFNVGAVQKGDYVRLVSSGFLHANWEHLIFN 60
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV------YHAFLAMSSKRQGMWVV 238
MI LYFF I ++G L +Y + GSVF L Y++ + S G+
Sbjct: 61 MISLYFFQDVIIGSMGNLMFLLIYFGSMLLGSVFSLYIYKKQPYYSAIGASGAVSGIIFA 120
Query: 239 DPSRTPA-----------LGVFLIGKDMLRII--EGNSNISGSAHLGGA 274
+ P G G + + + N+ +AHLGGA
Sbjct: 121 AIALYPTALSVNFLPGWLFGALYFGYSVFMMFNPQQGDNLGHAAHLGGA 169
>gi|344313259|gb|AEN04489.1| putative rhomboid-7, partial [Plutella xylostella]
Length = 208
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 72/175 (41%), Gaps = 25/175 (14%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
+V Y + N VF WR+ + + + S + S + ++ S FSH H+ +N
Sbjct: 1 KVFYPIFALNCLVFAAWRVRSLQPVMVKYFCS-NPASSAKCLPMVLSTFSHYSPLHLAAN 59
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF-----LAMSSKRQGMWVVD 239
M LY F + TLG E + +Y++ + S +Y L++ + M V+
Sbjct: 60 MYVLYSFMPAAVATLGKEQFVSMYLSAGVASSFASFLYKVVSKQPGLSLGASGAIMAVLS 119
Query: 240 ----------------PSRTPALGV---FLIGKDMLRIIEGNSNISGSAHLGGAA 275
P T A G ++G D+ ++ G +AHLGGAA
Sbjct: 120 YVCVQYPDTKLSIIFLPMYTFAAGSAIKVIMGVDLAGVLFGWKFFDHAAHLGGAA 174
>gi|325000791|ref|ZP_08121903.1| serine peptidase [Pseudonocardia sp. P1]
Length = 254
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 9/139 (6%)
Query: 104 ERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNF--------TI 155
E S ++ R+R + + G +V LI N AVF+L + + NF +
Sbjct: 22 ESSRSAPRWRNVAGATRAGKPVIVPALIAVNVAVFVL-TVVTAGSLNRNFDSPLFGLGAL 80
Query: 156 SLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGG 215
+ + G+L L+T+ F HI H+ NM L+ G + LG +Y +GG
Sbjct: 81 TPVDVADGQLWRLVTAGFLHIGPLHLAFNMFALWVIGREVEAVLGRARFTAVYGVSLLGG 140
Query: 216 SVFYLVYHAFLAMSSKRQG 234
S ++ L ++ G
Sbjct: 141 SAAVMLLSNPLGPTAGASG 159
>gi|256820663|ref|YP_003141942.1| rhomboid family protein [Capnocytophaga ochracea DSM 7271]
gi|256582246|gb|ACU93381.1| Rhomboid family protein [Capnocytophaga ochracea DSM 7271]
Length = 208
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 69/169 (40%), Gaps = 20/169 (11%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
+ + +I+ T + +P F N + ++ G L++S F H + EH++ N
Sbjct: 2 NITFIIILLATIAMSYYGFKNPTFF-NRYKFNVGAVQKGDYVRLVSSGFLHANWEHLIFN 60
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV------YHAFLAMSSKRQGMWVV 238
MI LYFF I ++G L +Y + GSVF L Y++ + S G+
Sbjct: 61 MISLYFFQDVIIGSMGNLMFLLIYFGSMLLGSVFSLYIYKKQPYYSAIGASGAVSGIIFA 120
Query: 239 DPSRTPA-----------LGVFLIGKDMLRII--EGNSNISGSAHLGGA 274
+ P G G + + + N+ +AHLGGA
Sbjct: 121 AIALYPTALSVNFLPGWLFGALYFGYSVFMMFNPQQGDNLGHAAHLGGA 169
>gi|207739329|ref|YP_002257722.1| uncharacterized membrane protein [Ralstonia solanacearum IPO1609]
gi|206592703|emb|CAQ59609.1| uncharacterized membrane protein [Ralstonia solanacearum IPO1609]
Length = 197
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 65/152 (42%), Gaps = 38/152 (25%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMA----------------- 210
L+T AF H V H+V NM G++ FG + RTLG LY+A
Sbjct: 48 LLTYAFLHASVPHLVFNMFGMFMFGRDVERTLGRVRTGVLYVASVLSAAFTQIAVMGLST 107
Query: 211 -------GAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEGNS 263
GA GG VF L+ A+ + +R + + P PA + + +IE
Sbjct: 108 VPAGPIVGASGG-VFGLLL-AYAVLFPRRMILLLFPPIPMPA----WLFATVYALIELTL 161
Query: 264 NISGS-------AHLGG-AAVAALAWARIRRR 287
+SGS AHLGG A L W +RRR
Sbjct: 162 GLSGSAGHIAHFAHLGGMAGSGVLLWRWLRRR 193
>gi|256389276|ref|YP_003110840.1| rhomboid family protein [Catenulispora acidiphila DSM 44928]
gi|256355502|gb|ACU68999.1| Rhomboid family protein [Catenulispora acidiphila DSM 44928]
Length = 356
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 27/140 (19%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV---- 217
+G + L+TS F H ++ HI SNMI L+F G + LG + +Y+ G + G+V
Sbjct: 140 NGEWYRLVTSMFLHANLIHIASNMISLFFIGPMLEAMLGRLRFVLVYLIGGLAGAVTSYW 199
Query: 218 ---------------FYLVYHAFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEGN 262
V+ + + +R+ ++DP + V L+ ++ + N
Sbjct: 200 FMTPLSPASLGASGAISAVFGCLVVIGLRRK---ILDPGM---IAVVLVINIVIPL--QN 251
Query: 263 SNISGSAHLGGAAVAALAWA 282
+NI H+GG AL A
Sbjct: 252 TNIDWRDHVGGVVAGALIGA 271
>gi|148269479|ref|YP_001243939.1| rhomboid family protein [Thermotoga petrophila RKU-1]
gi|170288153|ref|YP_001738391.1| rhomboid family protein [Thermotoga sp. RQ2]
gi|281411803|ref|YP_003345882.1| Rhomboid family protein [Thermotoga naphthophila RKU-10]
gi|147735023|gb|ABQ46363.1| Rhomboid family protein [Thermotoga petrophila RKU-1]
gi|170175656|gb|ACB08708.1| Rhomboid family protein [Thermotoga sp. RQ2]
gi|281372906|gb|ADA66468.1| Rhomboid family protein [Thermotoga naphthophila RKU-10]
Length = 235
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 16/128 (12%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPE-YLLKLYMAGAIGGSVFYL 220
+G LIT+ F H + HI+ N LY+FG+ + G E +L+ + G +G ++
Sbjct: 51 AGDWFRLITALFVHGGILHILFNSYALYYFGLIVEDIYGTEKFLVGYFFTGIVGNLATHV 110
Query: 221 VYHAFLAMSSKRQ-----GMWVVDPSR-------TPALGVFLIGKDMLRIIEG---NSNI 265
YH +++ + G+ R P G+ L+ ++ ++ G +NI
Sbjct: 111 FYHDTISVGASGAIFGLIGILFAAGFRKDTPFFMKPVTGMSLLPIILINVVYGFLPGTNI 170
Query: 266 SGSAHLGG 273
+ +AHLGG
Sbjct: 171 NNAAHLGG 178
>gi|392397021|ref|YP_006433622.1| hypothetical protein Fleli_1398 [Flexibacter litoralis DSM 6794]
gi|390528099|gb|AFM03829.1| putative membrane protein [Flexibacter litoralis DSM 6794]
Length = 308
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 32/145 (22%)
Query: 167 TLITSAFSHI-----DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
TL++ F H + HI+ NM+ LY+FG + +G L LY+ G + G V +L+
Sbjct: 70 TLLSYGFMHSLKGFNGILHILFNMLVLYWFGQIVVSEIGSNRFLGLYIWGILAGGVAFLL 129
Query: 222 YHAFLAMSSKRQGMWVVDPSR--------------TPALGVFLIGKDMLR---------- 257
+F+ + ++ M +V S + +F+IG+ L+
Sbjct: 130 IFSFVPFFAAQKTMGLVGASAGVYAIVIAAGTLMPNVKMNLFIIGEVSLKWIAIAYVVLS 189
Query: 258 --IIEGNSNISGS-AHLGGAAVAAL 279
++ G N G AHL GA + L
Sbjct: 190 FVMLAGGDNAGGDIAHLAGAGIGYL 214
>gi|333992831|ref|YP_004525445.1| serine protease [Mycobacterium sp. JDM601]
gi|333488799|gb|AEF38191.1| serine protease [Mycobacterium sp. JDM601]
Length = 264
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 113 RWRSWLRQYGSSEVV-YGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITS 171
R R +R ++ V+ YGLI N F+ + + + G+L+ L+TS
Sbjct: 49 RSRPMVRAASTTPVISYGLIALNVLAFI--GQMSSHQLDSELVLWSPAVADGQLYRLLTS 106
Query: 172 AFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
AF H H++ NM LY G + LG LY+ A+GGSV
Sbjct: 107 AFLHYGAMHLLLNMWALYVVGPPLEGLLGRSRFSALYLLSALGGSV 152
>gi|290958988|ref|YP_003490170.1| hypothetical protein SCAB_45641 [Streptomyces scabiei 87.22]
gi|260648514|emb|CBG71625.1| putative integral membrane protein [Streptomyces scabiei 87.22]
Length = 297
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%)
Query: 156 SLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGG 215
SL G+ + L+TS F H V HI+ NM+ L++ G + LG L LY A + G
Sbjct: 124 SLQGVAEGQWYRLVTSMFLHGSVTHILFNMLSLWWIGGPLEAALGRARYLTLYFASGLAG 183
Query: 216 SVF 218
S
Sbjct: 184 SAL 186
>gi|379733579|ref|YP_005327084.1| putative rhomboid protease [Blastococcus saxobsidens DD2]
gi|378781385|emb|CCG01035.1| Putative rhomboid protease [Blastococcus saxobsidens DD2]
Length = 253
Score = 40.8 bits (94), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS 216
L+T+AF HI + H+ NM+ L FG + R LG + LY+ A+GGS
Sbjct: 93 LLTAAFLHIGLLHLALNMLALLIFGSELERQLGRWRYVGLYLVSALGGS 141
>gi|407794575|ref|ZP_11141600.1| membrane serine peptidase [Idiomarina xiamenensis 10-D-4]
gi|407211641|gb|EKE81508.1| membrane serine peptidase [Idiomarina xiamenensis 10-D-4]
Length = 275
Score = 40.8 bits (94), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 80/181 (44%), Gaps = 13/181 (7%)
Query: 118 LRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHID 177
LRQ G + Y + + M +AD + D+ + L+T A H
Sbjct: 84 LRQAGWFTIAYAAVAVLIYLLMQTPMADDVIRYLRISDYFDHVEWSQPWRLLTPALLHFS 143
Query: 178 VEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV--FYLVYHAFLAMSSKRQGM 235
HIV N+ ++ G + R +G ++L+ +++ AI ++ FY+ F +S G+
Sbjct: 144 ATHIVFNVFWWWYLGGRLERYIGSQWLIAVFVFSAICSNIMQFYVGGPFFGGLSGVVYGL 203
Query: 236 ----WVVD-PSRTPA-LGVFLIGKDMLRIIEGNS-----NISGSAHLGGAAVAALAWARI 284
W+ RTP L +IG ++ ++ G + N++ +AHL G +A A +
Sbjct: 204 LGFFWIYSFGRRTPLWLPPAVIGFLLIWLVIGYTDLLWVNVANTAHLAGLISGCIAGAIV 263
Query: 285 R 285
R
Sbjct: 264 R 264
>gi|325954946|ref|YP_004238606.1| peptidase S54, rhomboid domain-containing protein [Weeksella virosa
DSM 16922]
gi|323437564|gb|ADX68028.1| Peptidase S54, rhomboid domain protein [Weeksella virosa DSM 16922]
Length = 235
Score = 40.8 bits (94), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 57/153 (37%), Gaps = 38/153 (24%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSI-----------------GRTLGPEYLLKLY 208
+ LITS F H+D H++ NM+ LYFF + + LG L LY
Sbjct: 46 YRLITSGFLHVDYTHLIFNMLTLYFFSNIVVAFFGNPFVVFGDTSFMNQNLGSILFLALY 105
Query: 209 MAGAIGGSVFYLVYH---------------------AFLAMSSKRQGMWVVDPSRTPALG 247
+ I G+V L+ H A + G++ V P
Sbjct: 106 LLSIIAGNVLALIEHRNQPNYSAVGASGGVSGILFSAIAVYPTLMLGIFFVIPMPAWIFA 165
Query: 248 VFLIGKDMLRIIEGNSNISGSAHLGGAAVAALA 280
+ +G + + N+ +AHLGG+ LA
Sbjct: 166 IIYLGFSVYGMRRNLGNLGHAAHLGGSVFGLLA 198
>gi|325677503|ref|ZP_08157167.1| rhomboid family protein [Rhodococcus equi ATCC 33707]
gi|325551750|gb|EGD21448.1| rhomboid family protein [Rhodococcus equi ATCC 33707]
Length = 300
Score = 40.8 bits (94), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 45/115 (39%), Gaps = 8/115 (6%)
Query: 120 QYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISL--------DNFLSGRLHTLITS 171
Q + + Y LI N A+F + + M N+ L +G ++TS
Sbjct: 79 QPPTPLLTYVLIAVNVAIFAVTAVQSRSVMDNHVASPLFLDWVLWGPAVAAGEFSRIVTS 138
Query: 172 AFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
F HI + H+ NM LY G LG +Y+ +GGS L+ +
Sbjct: 139 GFLHIGLMHLAVNMFALYVIGRDTEMVLGRARYFAVYVIALLGGSASVLMLDPLV 193
>gi|42522625|ref|NP_968005.1| integral membrane protein [Bdellovibrio bacteriovorus HD100]
gi|426403007|ref|YP_007021978.1| integral membrane protein [Bdellovibrio bacteriovorus str.
Tiberius]
gi|39575157|emb|CAE78998.1| integral membrane protein [Bdellovibrio bacteriovorus HD100]
gi|425859675|gb|AFY00711.1| integral membrane protein [Bdellovibrio bacteriovorus str.
Tiberius]
Length = 244
Score = 40.8 bits (94), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 124 SEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRL----HTL--ITSAFSH-I 176
+ VV L+I N A++ ++++ F+ FT S+ G++ H T F H +
Sbjct: 9 TPVVKWLLIINVAIWFVFQVIMEGFLRVPFT-SIFGLFPGKVLFDFHIWQPFTYMFLHSM 67
Query: 177 DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFY 219
V HI+ NM+ L+FFG + + G ++ L Y+ +G ++ Y
Sbjct: 68 QVTHILFNMLMLWFFGAELEQRWGSKFFLIYYLVAGVGAAILY 110
>gi|374620176|ref|ZP_09692710.1| putative membrane protein [gamma proteobacterium HIMB55]
gi|374303403|gb|EHQ57587.1| putative membrane protein [gamma proteobacterium HIMB55]
Length = 209
Score = 40.8 bits (94), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 24/143 (16%)
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS------------ 216
++ A H + H+V N + ++ FG + LG ++ L++AGA+GG+
Sbjct: 68 VSPALIHFGLLHLVFNSLWIWEFGSRLELRLGSVFVFNLFLAGAVGGNLLQYWWEGPSIF 127
Query: 217 -----VFYLVYHAFLAMSSKRQGMWVVD-PSRTPALGVF-LIG-KDMLRIIEGNSNISGS 268
V Y +S R G+ ++ PS + V+ LIG D+L+++ G +I+
Sbjct: 128 GGLSGVVYAYMGCLWVLSRMRPGLVLIPVPSVLTFMWVWLLIGFTDVLKLL-GLGSIANG 186
Query: 269 AHLGGAAVAALA---WARIRRRG 288
AHLGG V L AR+ RG
Sbjct: 187 AHLGGLLVGILTGIIIARVLPRG 209
>gi|300693980|ref|YP_003749953.1| peptidase s54, rhomboid family [Ralstonia solanacearum PSI07]
gi|299076017|emb|CBJ35328.1| putative peptidase S54, rhomboid family [Ralstonia solanacearum
PSI07]
gi|344169739|emb|CCA82101.1| putative peptidase S54, rhomboid family [blood disease bacterium
R229]
Length = 197
Score = 40.8 bits (94), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 62/147 (42%), Gaps = 28/147 (19%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAI-------------- 213
L+T AF H V H+V NM G++ FG + R LG LY+A +
Sbjct: 48 LVTYAFLHASVPHLVFNMFGMFMFGRDVERALGRVRTGVLYLASVLSAAFTQIAVVGFFT 107
Query: 214 ---------GGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPA---LGVFLIGKDMLRIIEG 261
G VF L+ A+ + +R + ++ P PA V+ + + L +
Sbjct: 108 FPAGPIVGASGGVFGLLL-AYAVLFPRRMILLLIPPIPMPAWLFATVYALVELTLGVSGS 166
Query: 262 NSNISGSAHLGG-AAVAALAWARIRRR 287
+S ++ AHLGG A L W R R
Sbjct: 167 HSGVAHFAHLGGMAGSGVLLWRWFRGR 193
>gi|405979365|ref|ZP_11037709.1| hypothetical protein HMPREF9241_00432 [Actinomyces turicensis
ACS-279-V-Col4]
gi|404392746|gb|EJZ87804.1| hypothetical protein HMPREF9241_00432 [Actinomyces turicensis
ACS-279-V-Col4]
Length = 284
Score = 40.8 bits (94), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 122 GSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHI 181
G V Y LI N A+F+L + + N+ ++ +T+AF H HI
Sbjct: 65 GQPVVTYTLIGINVALFILSFVLP---LVGNWLFFNPAVGYRQVWRFLTTAFLHSGFMHI 121
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
NM+ LY G+ + + LG L +Y+ AIG S+F L +
Sbjct: 122 AFNMLALYSVGVELEQVLGRTRYLSVYLLSAIGASLFVLAW 162
>gi|421453280|ref|ZP_15902636.1| Integral membrane protein (Rhomboid family) [Streptococcus
salivarius K12]
gi|400181589|gb|EJO15856.1| Integral membrane protein (Rhomboid family) [Streptococcus
salivarius K12]
Length = 224
Score = 40.8 bits (94), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 17/128 (13%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
L+T F HI VEH + NM+ LYF G + G L LY+ + G+ F L++ +
Sbjct: 61 LVTPIFVHIGVEHFLFNMLTLYFMGKMAEQIFGTLRFLGLYLLAGVMGNAFTLLFTPNVI 120
Query: 228 MSSKRQGMWVVDP--------SRTPALGVFLIGKDMLRIIEGN-------SNISGSAHLG 272
+ ++ + S +P L +G++ L +I N ++ + HLG
Sbjct: 121 AAGASTSLFGLFAAVVILGYYSHSPLLNQ--LGRNYLALIVINLIFNLFTPSVGITGHLG 178
Query: 273 GAAVAALA 280
G ALA
Sbjct: 179 GLVGGALA 186
>gi|322515950|ref|ZP_08068891.1| rhomboid family protein [Streptococcus vestibularis ATCC 49124]
gi|322125624|gb|EFX96954.1| rhomboid family protein [Streptococcus vestibularis ATCC 49124]
Length = 224
Score = 40.8 bits (94), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 17/128 (13%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
L+T F HI VEH + NM+ LYF G + G L LY+ + G+ F L++ +
Sbjct: 61 LVTPIFVHIGVEHFLFNMLTLYFMGRMAEQIFGTLRFLGLYLLAGVMGNAFTLLFTPNVI 120
Query: 228 MSSKRQGMWVVDP--------SRTPALGVFLIGKDMLRIIEGN-------SNISGSAHLG 272
+ ++ + S +P L +G++ L +I N ++ + HLG
Sbjct: 121 AAGASTSLFGLFAAIVILGYYSHSPLLNQ--LGRNYLALIVINLIFNLFTPSVGITGHLG 178
Query: 273 GAAVAALA 280
G ALA
Sbjct: 179 GLVGGALA 186
>gi|359786402|ref|ZP_09289537.1| serine protease GlpG [Halomonas sp. GFAJ-1]
gi|359296252|gb|EHK60505.1| serine protease GlpG [Halomonas sp. GFAJ-1]
Length = 282
Score = 40.8 bits (94), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 30/144 (20%)
Query: 158 DNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIG--- 214
D SG++ L++ AF H H++ N++ +++FG I + G +L L + IG
Sbjct: 131 DTLASGQVWRLLSPAFLHFGWMHLIFNLMWVWYFGRQIEQLQGSRTMLLLLLVAGIGANL 190
Query: 215 --------------GSVFYLVYHAFLAMSSK--RQGMWVVDPSRTPALGVFLIGKDMLRI 258
G V+ L+ H +L MS + R G +V L VF++G + +
Sbjct: 191 AQYVTGTVLFGGMSGVVYALLAHVWL-MSRRVPRSGFFV-----PQMLVVFMLGWMVFTM 244
Query: 259 IE-----GNSNISGSAHLGGAAVA 277
++ G N++ AHLGG V
Sbjct: 245 MDVAGSVGFGNVANEAHLGGLLVG 268
>gi|421498003|ref|ZP_15945147.1| GlpG protein [Aeromonas media WS]
gi|407182976|gb|EKE56889.1| GlpG protein [Aeromonas media WS]
Length = 288
Score = 40.8 bits (94), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 118 LRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHID 177
L Q G +V +IIA A++ L I P F F +L F + +T AF H
Sbjct: 104 LHQAGPLTLV--VIIACLAIYALDAIGLPIFDELAFHPTLAQFTDWQAWRYVTPAFIHFS 161
Query: 178 VEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGA 212
V H+V N++ ++ G I + LG L L + GA
Sbjct: 162 VLHLVFNLLWWWYLGGQIEQRLGSGKLFILLIVGA 196
>gi|408489615|ref|YP_006865984.1| membrane-associated serine protease, rhomboid superfamily
[Psychroflexus torquis ATCC 700755]
gi|408466890|gb|AFU67234.1| membrane-associated serine protease, rhomboid superfamily
[Psychroflexus torquis ATCC 700755]
Length = 215
Score = 40.8 bits (94), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Query: 122 GSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHI 181
G ++V +IA + D +F N + + + +G +++S F H+D H+
Sbjct: 2 GGIDLVIIAVIAANVLMSFKGFKDSQFF-NKYKFDVSSIKAGDKIRVLSSGFLHVDTTHL 60
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
NM+ LYFF S+ LG L +Y I G++ L +H
Sbjct: 61 FVNMLTLYFFASSVTSFLGTTGFLLVYFGSLIIGNLLSLYFH 102
>gi|404406119|ref|ZP_10997703.1| hypothetical protein AJC13_11845 [Alistipes sp. JC136]
Length = 200
Score = 40.8 bits (94), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 48/112 (42%), Gaps = 9/112 (8%)
Query: 119 RQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGR--LHT--LITSAFS 174
R + + VV LII N V+M A N + G HT IT F
Sbjct: 3 RYFQTPPVVKNLIIINVLVYM----ATALLPVGNQIMEYCALSLGTPFFHTYQFITYMFL 58
Query: 175 HIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF-YLVYHAF 225
H + EHI NM L+ FG ++ LG + L YM IG ++ YL AF
Sbjct: 59 HANFEHIFFNMFALWMFGRTLEYELGSQRFLTFYMVCGIGAALIQYLTALAF 110
>gi|302384591|ref|YP_003820413.1| rhomboid family protein [Clostridium saccharolyticum WM1]
gi|302195219|gb|ADL02790.1| Rhomboid family protein [Clostridium saccharolyticum WM1]
Length = 206
Score = 40.8 bits (94), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 129 GLIIANTAVFMLWRIA----DPKFMANNFTISLDNFLS-GRLHTLITSAFSHIDVEHIVS 183
GLI N F+ +A + +FM N+ + L G L+TS F H + HI++
Sbjct: 15 GLIAMNVIYFLYLEMAGSTVNTQFMVNHGAMYAPLVLEEGEYFRLLTSVFMHFGINHIMN 74
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
NM+ L+ G ++ R LG L Y+ +G +V ++
Sbjct: 75 NMLILFILGDNLERALGHIKYLLFYLLCGVGANVISII 112
>gi|336176302|ref|YP_004581677.1| rhomboid family protein [Frankia symbiont of Datisca glomerata]
gi|334857282|gb|AEH07756.1| Rhomboid family protein [Frankia symbiont of Datisca glomerata]
Length = 377
Score = 40.8 bits (94), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 151 NNFTISLDNFLSG-----RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLL 205
N FT+ + G + L+T+AF H V HI+ NM LY G + + LG L
Sbjct: 187 NTFTLDYSLYGPGIAANDEYYRLLTAAFLHAGVLHILFNMYALYLLGSQLEQILGRARYL 246
Query: 206 KLYMAGAIGGSVF-YLV 221
L++ AIGG+ YL+
Sbjct: 247 ALFVVCAIGGNTLSYLI 263
>gi|319900800|ref|YP_004160528.1| Rhomboid family protein [Bacteroides helcogenes P 36-108]
gi|319415831|gb|ADV42942.1| Rhomboid family protein [Bacteroides helcogenes P 36-108]
Length = 296
Score = 40.8 bits (94), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 29/141 (20%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH--- 223
+L+T F H + HI+ NM+ LY+FG + +L +Y+ G I G V Y+ +
Sbjct: 68 SLLTYMFMHAGLMHILFNMLWLYWFGALFLQFFSSRHLRGVYILGGICGGVLYMAAYNVF 127
Query: 224 --------------------AFLAMSSKRQG-----MWVVDPSRTPALGVFLIGKDMLRI 258
A +A ++ R+ +++ R L + +IG D+L I
Sbjct: 128 PYFRPMTEDSFMLGASASVLAVVAATAYREPNYPIRLFLFGTIRLKYLALIVIGTDLLFI 187
Query: 259 IEGNSNISGSAHLGGAAVAAL 279
N+ AHLGGA L
Sbjct: 188 TSSNAG-GHIAHLGGALAGLL 207
>gi|295425277|ref|ZP_06817980.1| rhomboid protease GluP [Lactobacillus amylolyticus DSM 11664]
gi|295065053|gb|EFG55958.1| rhomboid protease GluP [Lactobacillus amylolyticus DSM 11664]
Length = 226
Score = 40.8 bits (94), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
LIT+ F HI + H+VSN++ +Y+ G+ I LG L +Y+ +GG++ L +
Sbjct: 59 LITAQFLHIGIWHLVSNIVMIYYMGLIIEPMLGHWRFLLIYLLSGVGGNLLSLAF 113
>gi|116327525|ref|YP_797245.1| intramembrane protease [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116120269|gb|ABJ78312.1| Intramembrane protease [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
Length = 197
Score = 40.8 bits (94), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
+TLITS F H D H++ NMI Y FG ++ T+GP L Y+ + SV
Sbjct: 41 YTLITSGFIHEDWMHLIFNMISFYSFGKNLETTVGPVKFLLFYLGTILITSV 92
>gi|52144990|ref|YP_081838.1| rhomboid-like protein [Bacillus cereus E33L]
gi|51978459|gb|AAU20009.1| conserved hypothetical protein; probable rhomboid-like protein
[Bacillus cereus E33L]
Length = 190
Score = 40.8 bits (94), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIGGSVFYLV 221
LITS F H+D++H +SN I L+ G SI + LG +++ +++G +G YL+
Sbjct: 50 LITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGHFSFIIIFFLSGILGNIFSYLI 104
>gi|167634174|ref|ZP_02392496.1| rhomboid family protein [Bacillus anthracis str. A0442]
gi|170687776|ref|ZP_02878991.1| rhomboid family protein [Bacillus anthracis str. A0465]
gi|254686591|ref|ZP_05150450.1| rhomboid family protein [Bacillus anthracis str. CNEVA-9066]
gi|254723569|ref|ZP_05185356.1| rhomboid family protein [Bacillus anthracis str. A1055]
gi|254739716|ref|ZP_05197409.1| rhomboid family protein [Bacillus anthracis str. Kruger B]
gi|421641042|ref|ZP_16081606.1| rhomboid family protein [Bacillus anthracis str. BF1]
gi|167530488|gb|EDR93203.1| rhomboid family protein [Bacillus anthracis str. A0442]
gi|170668303|gb|EDT19051.1| rhomboid family protein [Bacillus anthracis str. A0465]
gi|403391827|gb|EJY89099.1| rhomboid family protein [Bacillus anthracis str. BF1]
Length = 190
Score = 40.8 bits (94), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIGGSVFYLV 221
LITS F H+D++H +SN I L+ G SI + LG +++ +++G +G YL+
Sbjct: 50 LITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGRFSFIIIFFLSGILGNIFSYLI 104
>gi|445383054|ref|ZP_21427373.1| hypothetical protein IQ5_08616 [Streptococcus thermophilus MTCC
5460]
gi|445395945|ref|ZP_21429103.1| hypothetical protein IQ7_08672 [Streptococcus thermophilus MTCC
5461]
gi|444748296|gb|ELW73272.1| hypothetical protein IQ7_08672 [Streptococcus thermophilus MTCC
5461]
gi|444748403|gb|ELW73372.1| hypothetical protein IQ5_08616 [Streptococcus thermophilus MTCC
5460]
Length = 224
Score = 40.8 bits (94), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
LIT F HI VEH + NM+ LYF G + G L LY+ + G+ F L++
Sbjct: 61 LITPIFVHIGVEHFLFNMLTLYFMGRMAEQIFGTLRFLGLYLLSGVMGNAFTLLF 115
>gi|156318630|ref|XP_001618082.1| hypothetical protein NEMVEDRAFT_v1g225524 [Nematostella vectensis]
gi|156197344|gb|EDO25982.1| predicted protein [Nematostella vectensis]
Length = 115
Score = 40.8 bits (94), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T++TS FSH+D H+ NM L+ F +I LG E + Y++G S+ +L + +F
Sbjct: 20 TILTSCFSHMDFWHLAINMYVLWSFAPTIQALLGREQFIAFYLSGETELSLIFLPWFSFS 79
Query: 227 A 227
A
Sbjct: 80 A 80
>gi|443244932|ref|YP_007378157.1| putative transmembrane rhomboid family protein [Nonlabens
dokdonensis DSW-6]
gi|442802331|gb|AGC78136.1| putative transmembrane rhomboid family protein [Nonlabens
dokdonensis DSW-6]
Length = 211
Score = 40.8 bits (94), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 64/146 (43%), Gaps = 17/146 (11%)
Query: 151 NNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMA 210
+N+ ++ G + TS F H + H+ NM+ L+FF ++ LG L +Y A
Sbjct: 30 SNYLFNIAGIQRGEQYRFFTSGFLHSNQNHLFFNMLTLFFFAGTVVYKLGDVKFLIIYFA 89
Query: 211 GAIGGSVF-YLV----YH-AFLAMSSKRQGM----WVVDPSRTPALGV----FLIGKDML 256
+GG+ YL+ YH + L S G+ ++DP+ G+ F IG +
Sbjct: 90 SLLGGNFLSYLIHREEYHYSALGASGAVSGIIYSAILLDPTMRIYFGIPGWLFGIGYLIY 149
Query: 257 RII---EGNSNISGSAHLGGAAVAAL 279
+ N NI AH GGA L
Sbjct: 150 SFYGMKKLNDNIGHDAHFGGAVAGVL 175
>gi|57235032|ref|YP_180882.1| rhomboid family protein [Dehalococcoides ethenogenes 195]
gi|57225480|gb|AAW40537.1| rhomboid family protein [Dehalococcoides ethenogenes 195]
Length = 190
Score = 40.8 bits (94), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 37/58 (63%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA 224
T++TS F H ++ H+ +NM+ LYFFG ++ + + L ++ G + GS+ +++ +A
Sbjct: 50 TILTSLFVHANLWHLFANMLTLYFFGNALLQMVSQRSWLIIFFGGGLAGSLLFILLNA 107
>gi|55823724|ref|YP_142165.1| hypothetical protein str1836 [Streptococcus thermophilus CNRZ1066]
gi|55739709|gb|AAV63350.1| conserved hypothetical protein [Streptococcus thermophilus
CNRZ1066]
Length = 224
Score = 40.8 bits (94), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 17/128 (13%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
LIT F HI VEH + NM+ LYF G + G L LY+ + G+ F L + +
Sbjct: 61 LITPIFVHIGVEHFLFNMLTLYFMGRMAEQIFGTLRFLGLYLLAGVMGNAFTLFFTPNVI 120
Query: 228 MSSKRQGMWVVDP--------SRTPALGVFLIGKDMLRIIEGN-------SNISGSAHLG 272
+ ++ + S +P L +G++ L +I N ++ + HLG
Sbjct: 121 AAGASTSLFGLFAAIVILGYYSHSPLLNQ--LGRNYLALIVINLIFNLFTPSVGITGHLG 178
Query: 273 GAAVAALA 280
G ALA
Sbjct: 179 GLVGGALA 186
>gi|71026406|ref|XP_762877.1| hypothetical protein [Theileria parva strain Muguga]
gi|68349829|gb|EAN30594.1| hypothetical protein TP03_0753 [Theileria parva]
Length = 422
Score = 40.8 bits (94), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 127 VYGLIIANTAVFMLWRIADPKF---MANNFTIS-LDNFLSGRLHTLITSAFSHIDVEHIV 182
VY L+ N A+F I D F ++ NF++ L+ F + +ITS F H D+ H++
Sbjct: 151 VYLLVKLNLALF----IVDLFFKGELSKNFSVKGLNLFYMNEHYRIITSLFFHWDLRHLL 206
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
SN+ L G ++ + GP LL +Y I + F +Y+
Sbjct: 207 SNVGSLLSVGNNVLKLFGPRNLLVIYFLSGITANYFSYLYN 247
>gi|255534977|ref|YP_003095348.1| hypothetical protein FIC_00833 [Flavobacteriaceae bacterium
3519-10]
gi|255341173|gb|ACU07286.1| hypothetical protein FIC_00833 [Flavobacteriaceae bacterium
3519-10]
Length = 218
Score = 40.8 bits (94), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 26/132 (19%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV------ 221
LI++ F H D+ H++ NM+ LYFFG + G L +Y+ + G+VF L
Sbjct: 45 LISAGFLHGDMMHLLFNMMTLYFFGPIVLEAFGALGFLVVYLGSIVFGNVFSLYLYKNQS 104
Query: 222 YHAFLAMSSKRQGMWVVDPSRTPALGV-----------FLIG--------KDMLRIIEGN 262
+++ + S G+ + P LG+ ++ G ML EG+
Sbjct: 105 WYSAIGASGGVSGILFASIAMIPDLGIYFFFIPIAIPGYIFGFLYFAYSVYMMLNPREGD 164
Query: 263 SNISGSAHLGGA 274
NI +AHLGGA
Sbjct: 165 -NIGHAAHLGGA 175
>gi|387760478|ref|YP_006067455.1| peptidase, S54 family [Streptococcus salivarius 57.I]
gi|339291245|gb|AEJ52592.1| peptidase, S54 family [Streptococcus salivarius 57.I]
Length = 224
Score = 40.8 bits (94), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
L+T F HI VEH + NM+ LYF G G L LY+ + G+ F L++
Sbjct: 61 LVTPIFVHIGVEHFLFNMLALYFMGKMAEHIFGTLRFLGLYLLAGVMGNAFTLLF 115
>gi|410637694|ref|ZP_11348267.1| GlpG protein [Glaciecola lipolytica E3]
gi|410142777|dbj|GAC15472.1| GlpG protein [Glaciecola lipolytica E3]
Length = 299
Score = 40.8 bits (94), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 15/141 (10%)
Query: 160 FLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFY 219
F SG+ IT AF H D HI+ N++ +F G I + G LL +++ AI ++
Sbjct: 148 FESGQWWRAITPAFIHFDEMHIIFNLLWWWFAGKEIEKKFGSSTLLLIFLLCAIIPNLGQ 207
Query: 220 LVYHA--FLAMSSKRQGM-----WV--VDPSRTPALGVFLIGKDMLRIIEGNSNI----- 265
L+ F +S G+ W + P AL ++IG ++ ++ G +I
Sbjct: 208 LMTDGPEFGGLSGVVYGVIGFVWWCGWLRPQWGLALPNYIIGFSLVWLVLGYVDILWVSV 267
Query: 266 SGSAH-LGGAAVAALAWARIR 285
+ +AH LG A+AW +
Sbjct: 268 ANTAHTLGLVCGCAIAWCYVH 288
>gi|30260425|ref|NP_842802.1| rhomboid family protein [Bacillus anthracis str. Ames]
gi|47525506|ref|YP_016855.1| rhomboid family protein [Bacillus anthracis str. 'Ames Ancestor']
gi|49183268|ref|YP_026520.1| rhomboid family protein [Bacillus anthracis str. Sterne]
gi|165871540|ref|ZP_02216186.1| rhomboid family protein [Bacillus anthracis str. A0488]
gi|167640337|ref|ZP_02398602.1| rhomboid family protein [Bacillus anthracis str. A0193]
gi|170707901|ref|ZP_02898351.1| rhomboid family protein [Bacillus anthracis str. A0389]
gi|177653388|ref|ZP_02935598.1| rhomboid family protein [Bacillus anthracis str. A0174]
gi|190567414|ref|ZP_03020328.1| rhomboid family protein [Bacillus anthracis str. Tsiankovskii-I]
gi|227812917|ref|YP_002812926.1| rhomboid family protein [Bacillus anthracis str. CDC 684]
gi|229604752|ref|YP_002864876.1| rhomboid family protein [Bacillus anthracis str. A0248]
gi|254734931|ref|ZP_05192643.1| rhomboid family protein [Bacillus anthracis str. Western North
America USA6153]
gi|254754913|ref|ZP_05206948.1| rhomboid family protein [Bacillus anthracis str. Vollum]
gi|254756956|ref|ZP_05208984.1| rhomboid family protein [Bacillus anthracis str. Australia 94]
gi|421511441|ref|ZP_15958311.1| rhomboid family protein [Bacillus anthracis str. UR-1]
gi|30253746|gb|AAP24288.1| rhomboid family protein [Bacillus anthracis str. Ames]
gi|47500654|gb|AAT29330.1| rhomboid family protein [Bacillus anthracis str. 'Ames Ancestor']
gi|49177195|gb|AAT52571.1| rhomboid family protein [Bacillus anthracis str. Sterne]
gi|164712644|gb|EDR18175.1| rhomboid family protein [Bacillus anthracis str. A0488]
gi|167511739|gb|EDR87120.1| rhomboid family protein [Bacillus anthracis str. A0193]
gi|170127259|gb|EDS96136.1| rhomboid family protein [Bacillus anthracis str. A0389]
gi|172081428|gb|EDT66501.1| rhomboid family protein [Bacillus anthracis str. A0174]
gi|190561541|gb|EDV15512.1| rhomboid family protein [Bacillus anthracis str. Tsiankovskii-I]
gi|227004612|gb|ACP14355.1| rhomboid family protein [Bacillus anthracis str. CDC 684]
gi|229269160|gb|ACQ50797.1| rhomboid family protein [Bacillus anthracis str. A0248]
gi|401818519|gb|EJT17719.1| rhomboid family protein [Bacillus anthracis str. UR-1]
Length = 190
Score = 40.4 bits (93), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIGGSVFYLV 221
LITS F H+D++H +SN I L+ G SI + LG +++ +++G +G YL+
Sbjct: 50 LITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGRFSFIIIFFLSGILGNIFSYLI 104
>gi|411011379|ref|ZP_11387708.1| GlpG protein [Aeromonas aquariorum AAK1]
gi|423198992|ref|ZP_17185575.1| hypothetical protein HMPREF1171_03607 [Aeromonas hydrophila SSU]
gi|404629651|gb|EKB26394.1| hypothetical protein HMPREF1171_03607 [Aeromonas hydrophila SSU]
Length = 277
Score = 40.4 bits (93), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 118 LRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHID 177
L Q G +V +IIA A++ L I P F F +L F + T AF H
Sbjct: 93 LHQAGPLTLV--VIIACLAIYGLDAIGLPIFDELAFHPTLAQFTDWQAWRYFTPAFIHFS 150
Query: 178 VEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGA 212
V H+V N++ ++ G I + LG LL L + GA
Sbjct: 151 VLHLVFNLLWWWYLGGQIEQRLGSGKLLILLLVGA 185
>gi|407451588|ref|YP_006723312.1| hypothetical protein B739_0812 [Riemerella anatipestifer RA-CH-1]
gi|403312573|gb|AFR35414.1| putative membrane protein [Riemerella anatipestifer RA-CH-1]
Length = 244
Score = 40.4 bits (93), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 51/110 (46%), Gaps = 10/110 (9%)
Query: 130 LIIANTAVFMLWRI---ADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMI 186
LII N VF+L F+ F +S NF R +IT F H H++ NMI
Sbjct: 12 LIIINVVVFILGYFLPAGIENFLPAYFPLS-PNF---RSWQIITHMFMHGGFTHLLFNMI 67
Query: 187 GLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV---YHAFLAMSSKRQ 233
GL+ FG + R LG + L LY +G + + V YH + SS Q
Sbjct: 68 GLWSFGSVLERALGEKKYLILYFFSGLGAFILFNVWNYYHFYQLTSSLHQ 117
>gi|347525683|ref|YP_004832431.1| rhomboid family integral membrane protein [Lactobacillus ruminis
ATCC 27782]
gi|345284642|gb|AEN78495.1| rhomboid family integral membrane protein [Lactobacillus ruminis
ATCC 27782]
Length = 219
Score = 40.4 bits (93), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 130 LIIANTAVFMLWRIA----DPKFMAN---NFTISLDNFLSGRLHTLITSAFSHIDVEHIV 182
LI N A+++L A +P + NF + N G L+T+ F HI +EH+
Sbjct: 14 LIGINVAIYLLMTFAGGSQNPSVLVRFGANFAPYVSN---GEYWRLLTAMFLHIGLEHLA 70
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS 216
NM+ LYF G S+ LG LY+ I G
Sbjct: 71 LNMLTLYFIGASLEPILGSVRFAVLYLVSGICGD 104
>gi|256374174|ref|YP_003097834.1| rhomboid family protein [Actinosynnema mirum DSM 43827]
gi|255918477|gb|ACU33988.1| Rhomboid family protein [Actinosynnema mirum DSM 43827]
Length = 298
Score = 40.4 bits (93), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
L+TS F H+ V HI NM LY G + LG L +Y+ +GGS ++ ++
Sbjct: 136 LVTSGFLHLGVTHIGLNMASLYILGRDLEPVLGRARFLAVYLLSLLGGSASVYLFEEVVS 195
Query: 228 MSSKRQG 234
+++ G
Sbjct: 196 LTAGASG 202
>gi|386321444|ref|YP_006017606.1| hypothetical protein RIA_1146 [Riemerella anatipestifer RA-GD]
gi|325335987|gb|ADZ12261.1| Uncharacterized membrane protein [Riemerella anatipestifer RA-GD]
Length = 245
Score = 40.4 bits (93), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 51/110 (46%), Gaps = 10/110 (9%)
Query: 130 LIIANTAVFMLWRI---ADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMI 186
LII N VF+L F+ F +S NF R +IT F H H++ NMI
Sbjct: 13 LIIINVVVFILGYFLPAGIENFLPAYFPLS-PNF---RSWQIITHMFMHGGFPHLLFNMI 68
Query: 187 GLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV---YHAFLAMSSKRQ 233
GL+ FG + R LG + L LY +G + + V YH + SS Q
Sbjct: 69 GLWSFGSVLERALGEKKYLILYFFSGLGAFILFNVWNYYHFYQLTSSLHQ 118
>gi|55821808|ref|YP_140250.1| hypothetical protein stu1836 [Streptococcus thermophilus LMG 18311]
gi|55737793|gb|AAV61435.1| Conserved hypothetical, predicted membrane protein (TMS6)
[Streptococcus thermophilus LMG 18311]
Length = 224
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 17/128 (13%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
LIT F HI VEH + NM+ LYF G + G L LY+ + G+ F L + +
Sbjct: 61 LITPIFVHIGVEHFLFNMLTLYFMGRMAEQIFGTLRFLGLYLLAGVMGNAFTLFFTPNVI 120
Query: 228 MSSKRQGMWVVDP--------SRTPALGVFLIGKDMLRIIEGN-------SNISGSAHLG 272
+ ++ + S +P L +G++ L +I N ++ + HLG
Sbjct: 121 AAGASTSLFGLFAAIVILGYYSHSPLLNQ--LGRNYLALIVINLIFNLFTPSVGITGHLG 178
Query: 273 GAAVAALA 280
G ALA
Sbjct: 179 GLVGGALA 186
>gi|377572160|ref|ZP_09801257.1| hypothetical protein GOTRE_152_00160 [Gordonia terrae NBRC 100016]
gi|377530656|dbj|GAB46422.1| hypothetical protein GOTRE_152_00160 [Gordonia terrae NBRC 100016]
Length = 237
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 10/115 (8%)
Query: 128 YGLIIANTAVFMLW----RIADPK----FMANNFTISLDNFLSGRLHTLITSAFSHIDVE 179
Y LI N +F L + DP F A + S + +G L+T+ F H V
Sbjct: 15 YALIAVNLLIFALCVLQAGVGDPGGASIFSAGDLLKS--DVAAGEYWRLLTAGFLHFSVM 72
Query: 180 HIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQG 234
H+ NM+ LY G + LG L +Y+ +GGS +++ A+++ G
Sbjct: 73 HVAVNMLSLYILGRDLELALGIGRYLAVYVIALLGGSAAVMLFENDRALTAGASG 127
>gi|313206565|ref|YP_004045742.1| rhomboid family protein [Riemerella anatipestifer ATCC 11845 = DSM
15868]
gi|383485869|ref|YP_005394781.1| rhomboid family protein [Riemerella anatipestifer ATCC 11845 = DSM
15868]
gi|416110158|ref|ZP_11591877.1| Rhomboid family protein [Riemerella anatipestifer RA-YM]
gi|442314232|ref|YP_007355535.1| putative membrane protein [Riemerella anatipestifer RA-CH-2]
gi|312445881|gb|ADQ82236.1| Rhomboid family protein [Riemerella anatipestifer ATCC 11845 = DSM
15868]
gi|315023439|gb|EFT36447.1| Rhomboid family protein [Riemerella anatipestifer RA-YM]
gi|380460554|gb|AFD56238.1| rhomboid family protein [Riemerella anatipestifer ATCC 11845 = DSM
15868]
gi|441483155|gb|AGC39841.1| putative membrane protein [Riemerella anatipestifer RA-CH-2]
Length = 244
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 51/110 (46%), Gaps = 10/110 (9%)
Query: 130 LIIANTAVFMLWRI---ADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMI 186
LII N VF+L F+ F +S NF R +IT F H H++ NMI
Sbjct: 12 LIIINVVVFILGYFLPAGIENFLPAYFPLS-PNF---RSWQIITHMFMHGGFPHLLFNMI 67
Query: 187 GLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV---YHAFLAMSSKRQ 233
GL+ FG + R LG + L LY +G + + V YH + SS Q
Sbjct: 68 GLWSFGSVLERALGEKKYLILYFFSGLGAFILFNVWNYYHFYQLTSSLHQ 117
>gi|15839491|ref|NP_334528.1| rhomboid family protein [Mycobacterium tuberculosis CDC1551]
gi|148821302|ref|YP_001286056.1| integral membrane protein [Mycobacterium tuberculosis F11]
gi|253797028|ref|YP_003030029.1| hypothetical protein TBMG_00111 [Mycobacterium tuberculosis KZN
1435]
gi|254233504|ref|ZP_04926830.1| hypothetical protein TBCG_00110 [Mycobacterium tuberculosis C]
gi|289445640|ref|ZP_06435384.1| rhomboid family protein [Mycobacterium tuberculosis CPHL_A]
gi|289747877|ref|ZP_06507255.1| rhomboid family protein [Mycobacterium tuberculosis 02_1987]
gi|308378549|ref|ZP_07482957.2| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
gi|308394636|ref|ZP_07491694.2| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
gi|375294312|ref|YP_005098579.1| hypothetical protein TBSG_00111 [Mycobacterium tuberculosis KZN
4207]
gi|392430521|ref|YP_006471565.1| hypothetical protein TBXG_000111 [Mycobacterium tuberculosis KZN
605]
gi|422815296|ref|ZP_16863514.1| membrane protein [Mycobacterium tuberculosis CDC1551A]
gi|13879598|gb|AAK44342.1| Rhomboid family protein [Mycobacterium tuberculosis CDC1551]
gi|124603297|gb|EAY61572.1| hypothetical protein TBCG_00110 [Mycobacterium tuberculosis C]
gi|148719829|gb|ABR04454.1| conserved integral membrane protein [Mycobacterium tuberculosis
F11]
gi|253318531|gb|ACT23134.1| conserved membrane protein [Mycobacterium tuberculosis KZN 1435]
gi|289418598|gb|EFD15799.1| rhomboid family protein [Mycobacterium tuberculosis CPHL_A]
gi|289688405|gb|EFD55893.1| rhomboid family protein [Mycobacterium tuberculosis 02_1987]
gi|308197784|gb|ADO17908.1| rhomboid protease 1 [Mycobacterium tuberculosis H37Rv]
gi|308197788|gb|ADO17910.1| rhomboid protease 1 [Mycobacterium tuberculosis]
gi|308197792|gb|ADO17912.1| rhomboid protease 1 [Mycobacterium bovis BCG]
gi|308197796|gb|ADO17914.1| rhomboid protease 1 [Mycobacterium bovis]
gi|308352202|gb|EFP41053.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
gi|308367674|gb|EFP56525.1| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
gi|323717250|gb|EGB26458.1| membrane protein [Mycobacterium tuberculosis CDC1551A]
gi|328456817|gb|AEB02240.1| conserved membrane protein [Mycobacterium tuberculosis KZN 4207]
gi|392051930|gb|AFM47488.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605]
Length = 284
Score = 40.4 bits (93), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 119 RQYGSSEVV-YGLIIANTAVFMLWRIADPKFMANNFTISL--DNFLSGRLHTLITSAFSH 175
RQ ++ VV Y LI N VF++ M ++L SG+ + L+TSAF H
Sbjct: 66 RQRSATPVVTYTLISLNALVFVM----QVTVMGLERQLALWPPAVASGQTYRLVTSAFLH 121
Query: 176 IDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF-YLV 221
H++ NM LY G + LG LY A+GGSV YL+
Sbjct: 122 YGAMHLLLNMWALYVVGPPLEMWLGRLRFGALYAVSALGGSVLVYLI 168
>gi|393778701|ref|ZP_10366964.1| peptidase, S54 family [Capnocytophaga sp. oral taxon 412 str.
F0487]
gi|392611587|gb|EIW94322.1| peptidase, S54 family [Capnocytophaga sp. oral taxon 412 str.
F0487]
Length = 208
Score = 40.4 bits (93), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 69/169 (40%), Gaps = 20/169 (11%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
+ + +I+ T + +P F N + ++ G L++S F H + EH++ N
Sbjct: 2 NITFIIILLATIAMSYYGFNNPTFF-NRYKFNVGAVQKGDYVRLVSSGFLHANWEHLIFN 60
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV------YHAFLAMSSKRQGMWVV 238
MI LYFF I ++G L +Y + GSVF L Y++ + S G+
Sbjct: 61 MISLYFFQDVIIGSMGNLMFLLIYFGSMLLGSVFSLYIYKKQPYYSAIGASGAVSGIIFA 120
Query: 239 DPSRTPA-----------LGVFLIGKDMLRII--EGNSNISGSAHLGGA 274
+ P G G + + + N+ +AHLGGA
Sbjct: 121 AIALYPTALSVNFLPGWLFGALYFGYSVFMMFNPQQGDNLGHAAHLGGA 169
>gi|49476749|ref|YP_034576.1| rhomboid-like protein [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|118475997|ref|YP_893148.1| rhomboid family protein [Bacillus thuringiensis str. Al Hakam]
gi|196036042|ref|ZP_03103443.1| rhomboid family protein [Bacillus cereus W]
gi|196041125|ref|ZP_03108421.1| rhomboid family protein [Bacillus cereus NVH0597-99]
gi|196046176|ref|ZP_03113403.1| rhomboid family protein [Bacillus cereus 03BB108]
gi|218901442|ref|YP_002449276.1| rhomboid family protein [Bacillus cereus AH820]
gi|225862291|ref|YP_002747669.1| rhomboid family protein [Bacillus cereus 03BB102]
gi|376264269|ref|YP_005116981.1| rhomboid family protein [Bacillus cereus F837/76]
gi|49328305|gb|AAT58951.1| conserved hypothetical protein, probable rhomboid-like protein
[Bacillus thuringiensis serovar konkukian str. 97-27]
gi|118415222|gb|ABK83641.1| rhomboid family protein [Bacillus thuringiensis str. Al Hakam]
gi|195991411|gb|EDX55378.1| rhomboid family protein [Bacillus cereus W]
gi|196022921|gb|EDX61601.1| rhomboid family protein [Bacillus cereus 03BB108]
gi|196028060|gb|EDX66671.1| rhomboid family protein [Bacillus cereus NVH0597-99]
gi|218538397|gb|ACK90795.1| rhomboid family protein [Bacillus cereus AH820]
gi|225790775|gb|ACO30992.1| rhomboid family protein [Bacillus cereus 03BB102]
gi|364510069|gb|AEW53468.1| Rhomboid family protein [Bacillus cereus F837/76]
Length = 190
Score = 40.4 bits (93), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIGGSVFYLV 221
LITS F H+D++H +SN I L+ G SI + LG +++ +++G +G YL+
Sbjct: 50 LITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGRFSFIIIFFLSGILGNIFSYLI 104
>gi|385805593|ref|YP_005841991.1| peptidase, family S54 [Fervidicoccus fontis Kam940]
gi|383795456|gb|AFH42539.1| peptidase, family S54 [Fervidicoccus fontis Kam940]
Length = 472
Score = 40.4 bits (93), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 155 ISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIG 214
I L++ + G L + TS F+H ++ HI NM L+ FG S+ +G + L LY+ I
Sbjct: 80 ILLEDPVQGVLR-IFTSMFTHANIFHIFFNMYFLWIFGRSVENAIGHKRFLILYLLSGIA 138
Query: 215 GSVFYLVY 222
S+FY +
Sbjct: 139 ASIFYFAF 146
>gi|417302529|ref|ZP_12089628.1| Peptidase S54, rhomboid [Rhodopirellula baltica WH47]
gi|327541162|gb|EGF27707.1| Peptidase S54, rhomboid [Rhodopirellula baltica WH47]
Length = 410
Score = 40.4 bits (93), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 16/106 (15%)
Query: 121 YGSSEVVY-------GLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAF 173
YG+ VY G+I ANT +F+L + + + A+++ I F +TSAF
Sbjct: 5 YGTDAPVYHYPVATIGIIAANTGLFLLTGMGE--YGAHDWLIL--EFDRINPFQWVTSAF 60
Query: 174 SHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMA-----GAIG 214
H H++ NM+ L+ FG+ I LG + LY+ GAIG
Sbjct: 61 MHASWSHLIGNMVFLWCFGLVIEGKLGWQRFTLLYLGLALADGAIG 106
>gi|325285171|ref|YP_004260961.1| peptidase S54, rhomboid domain-containing protein [Cellulophaga
lytica DSM 7489]
gi|324320625|gb|ADY28090.1| Peptidase S54, rhomboid domain protein [Cellulophaga lytica DSM
7489]
Length = 293
Score = 40.4 bits (93), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 80/190 (42%), Gaps = 34/190 (17%)
Query: 120 QYGSSEVVYGLIIANTAVFMLWRIADPKF----MANNFTI--SLDNFLSGRLHTLITSAF 173
QY + LI N +F+L I F + N F + ++ +F+ + +++T +F
Sbjct: 8 QYARLNIAEKLIAINVVIFLLNLILVNLFRLPNIVNWFNLPENIGDFIL-QPWSIVTYSF 66
Query: 174 SHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQ 233
H HI NM+ LYFFG + + L +Y G I G +++ + + +
Sbjct: 67 FHSGFGHIFWNMLMLYFFGRTFLNLFDAKKFLNVYFLGVIVGGFLFMIGYNTIPALLNQN 126
Query: 234 GMWVVDPSRTPA-------------------------LGVFLIGKDMLRIIEGNSNISGS 268
G+ + + A LGV ++ D+LR+ G N+ G
Sbjct: 127 GVLIGASAGVTAILIYVCTYLPNQTVRLLIIDLKLWHLGVIIVVLDLLRLSNG-QNVGGM 185
Query: 269 -AHLGGAAVA 277
+HLGGAA+
Sbjct: 186 LSHLGGAALG 195
>gi|301051972|ref|YP_003790183.1| rhomboid family protein [Bacillus cereus biovar anthracis str. CI]
gi|300374141|gb|ADK03045.1| rhomboid family protein [Bacillus cereus biovar anthracis str. CI]
Length = 156
Score = 40.4 bits (93), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIGGSVFYLV 221
LITS F H+D++H +SN I L+ G SI + LG +++ +++G +G YL+
Sbjct: 16 LITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGRFSFIIIFFLSGILGNIFSYLI 70
>gi|424793519|ref|ZP_18219625.1| putative rhomboid family membrane protein [Xanthomonas translucens
pv. graminis ART-Xtg29]
gi|422796603|gb|EKU25083.1| putative rhomboid family membrane protein [Xanthomonas translucens
pv. graminis ART-Xtg29]
Length = 211
Score = 40.4 bits (93), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 57/144 (39%), Gaps = 37/144 (25%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLG----------------------PEYL- 204
L+T F H D H++ NM+ LYFFG I R + P YL
Sbjct: 48 LLTHGFIHADFPHLLFNMVTLYFFGGPIERLMERLTGSLLTYPLFYLAALVVAILPSYLK 107
Query: 205 -------LKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPAL--GVFLIGKDM 255
L +GA+ +F A++ ++ + P PA+ +F +G +
Sbjct: 108 NQKNPNYFSLGASGAVSAVLF-----AYILLAPWTGIYFFFIPIPIPAILYALFYVGYSI 162
Query: 256 LRIIEGNSNISGSAHLGGAAVAAL 279
G NI+ SAHL GAA +
Sbjct: 163 WMDRRGGDNINHSAHLAGAAFGVM 186
>gi|423553832|ref|ZP_17530159.1| hypothetical protein IGW_04463 [Bacillus cereus ISP3191]
gi|401182652|gb|EJQ89784.1| hypothetical protein IGW_04463 [Bacillus cereus ISP3191]
Length = 190
Score = 40.4 bits (93), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIGGSVFYLV 221
LITS F H+D++H +SN I L+ G SI + LG +++ +++G +G YL+
Sbjct: 50 LITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGRFSFIIIFFLSGILGNIFSYLI 104
>gi|255325720|ref|ZP_05366816.1| rhomboid family protein [Corynebacterium tuberculostearicum SK141]
gi|255297214|gb|EET76535.1| rhomboid family protein [Corynebacterium tuberculostearicum SK141]
Length = 217
Score = 40.4 bits (93), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
T ++SAF H+D H+ NMI L G + R LG L Y+ +G S L +
Sbjct: 60 QTALSSAFMHLDAGHLAVNMIMLVLIGREVERALGTGLYLAAYLISCLGASAMILTF 116
>gi|417800856|ref|ZP_12447962.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21318]
gi|334277580|gb|EGL95806.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21318]
Length = 289
Score = 40.4 bits (93), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLY-MAGAIGGSV 217
N + G + ++TS F H EHI+ NM+ L+ FG + +G +L +Y +AG G V
Sbjct: 196 NVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFV 255
>gi|386734109|ref|YP_006207290.1| rhomboid family protein [Bacillus anthracis str. H9401]
gi|384383961|gb|AFH81622.1| Rhomboid family protein [Bacillus anthracis str. H9401]
Length = 190
Score = 40.4 bits (93), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIGGSVFYLV 221
LITS F H+D++H +SN I L+ G SI + LG +++ +++G +G YL+
Sbjct: 50 LITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGRFSFIIIFFLSGILGNIFSYLI 104
>gi|285019203|ref|YP_003376914.1| hypothetical protein XALc_2443 [Xanthomonas albilineans GPE PC73]
gi|283474421|emb|CBA16922.1| hypothetical uncharacterized membrane protein [Xanthomonas
albilineans GPE PC73]
Length = 218
Score = 40.4 bits (93), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 14/92 (15%)
Query: 133 ANTAVFMLWRIADPKFMANNFTISLDNFLSGR---LHTLITSAFSHIDVEHIVSNMIGLY 189
A A FMLW I S D F SG+ + L+T AF H H++ NM+ LY
Sbjct: 29 ATFAPFMLWPIG-----------SFDPFSSGQNFQIWQLLTYAFLHGGFSHLLFNMLALY 77
Query: 190 FFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
FG + +T G + L Y+ G + L+
Sbjct: 78 MFGGPLEQTWGNKRFLTYYLVCVAGAGLCQLL 109
>gi|117618367|ref|YP_854633.1| GlpG protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
gi|117559774|gb|ABK36722.1| GlpG protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
Length = 277
Score = 40.4 bits (93), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 118 LRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHID 177
L Q G +V +IIA A++ L I P F F +L F + T AF H
Sbjct: 93 LHQAGPLTLV--VIIACLAIYGLDAIGLPIFDELAFHPTLAQFTDWQAWRYFTPAFIHFS 150
Query: 178 VEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGA 212
V H+V N++ ++ G I + LG LL L + GA
Sbjct: 151 VLHLVFNLLWWWYLGGQIEQRLGSGKLLILLLVGA 185
>gi|87308794|ref|ZP_01090933.1| hypothetical protein DSM3645_11162 [Blastopirellula marina DSM
3645]
gi|87288505|gb|EAQ80400.1| hypothetical protein DSM3645_11162 [Blastopirellula marina DSM
3645]
Length = 300
Score = 40.4 bits (93), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 81/193 (41%), Gaps = 39/193 (20%)
Query: 122 GSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGR--------LHTL----- 168
G +V L+I N VF + + +A F + F+ G LH L
Sbjct: 21 GGRSMVNTLVIINVIVFFVDWLVFGSRLAGYFDMQAGGFVPGLASVHADTLLHPLMWWRF 80
Query: 169 ITSAFSHI--DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFY-LVYHAF 225
+T F H D+ HI+ NM L+ FG I G L++Y+ + G VF+ V A
Sbjct: 81 LTYGFLHSQSDIWHIIGNMFVLWMFGRQIEERYGGAEFLRIYLVSVVLGGVFWSAVCLAT 140
Query: 226 LAMSSKRQG----------MWVVDPSRT----------PA--LGVFLIGKDMLRII-EGN 262
+M+ G +++ + R PA +GV +IG +++ G
Sbjct: 141 GSMNGSVVGASGAVTTVLILFICNYPRVTIYVSLLFPVPAWLVGVVMIGFNVMGAFGNGQ 200
Query: 263 SNISGSAHLGGAA 275
SN++ + HL GAA
Sbjct: 201 SNVAFTVHLAGAA 213
>gi|116628516|ref|YP_821135.1| membrane-associated serine protease [Streptococcus thermophilus
LMD-9]
gi|387910529|ref|YP_006340835.1| membrane-associated serine protease [Streptococcus thermophilus
MN-ZLW-002]
gi|116101793|gb|ABJ66939.1| Membrane-associated serine protease [Streptococcus thermophilus
LMD-9]
gi|387575464|gb|AFJ84170.1| membrane-associated serine protease [Streptococcus thermophilus
MN-ZLW-002]
Length = 224
Score = 40.4 bits (93), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 17/128 (13%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
LIT F HI VEH + NM+ LYF G + G L LY+ + G+ F L + +
Sbjct: 61 LITPIFVHIGVEHFLFNMLTLYFMGRMAEQIFGTLRFLGLYLLAGVMGNAFTLFFTPNVI 120
Query: 228 MSSKRQGMWVVDP--------SRTPALGVFLIGKDMLRIIEGN-------SNISGSAHLG 272
+ ++ + S +P L +G++ L +I N ++ + HLG
Sbjct: 121 AAGASTSLFGLFSAIVILGYYSHSPLLNQ--LGRNYLALIVINLIFNLFTPSVGITGHLG 178
Query: 273 GAAVAALA 280
G ALA
Sbjct: 179 GLVGGALA 186
>gi|429757186|ref|ZP_19289734.1| peptidase, S54 family [Capnocytophaga sp. oral taxon 324 str.
F0483]
gi|429169223|gb|EKY10993.1| peptidase, S54 family [Capnocytophaga sp. oral taxon 324 str.
F0483]
Length = 208
Score = 40.4 bits (93), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 70/169 (41%), Gaps = 20/169 (11%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
+ + +I+ T + +P F N + ++ G L++S F H + +H++ N
Sbjct: 2 NITFIIILLVTIAMSYYGFNNPTFF-NRYKFNVGAVQKGDYVRLVSSGFLHANWQHLIFN 60
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV------YHAFLAMSSKRQGMWVV 238
MI LYFF I +++G L +Y + GSVF L Y++ + S G+
Sbjct: 61 MISLYFFQDVIIKSMGNLLFLFIYFGSMLLGSVFSLYIYKKQPYYSAIGASGAVSGIIFA 120
Query: 239 DPSRTPA-----------LGVFLIGKDMLRII--EGNSNISGSAHLGGA 274
+ P G G + + + N+ +AHLGGA
Sbjct: 121 AIALYPTALSVNFLPGWLFGALYFGYSVFMMFNPQQGDNLGHAAHLGGA 169
>gi|386002483|ref|YP_005920782.1| rhomboid family protein [Methanosaeta harundinacea 6Ac]
gi|357210539|gb|AET65159.1| Rhomboid family protein [Methanosaeta harundinacea 6Ac]
Length = 236
Score = 40.4 bits (93), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 129 GLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGL 188
G+I+ +F +A P F N+ L+ TLIT F H D+ H++ NMI L
Sbjct: 56 GMILILCVLFYFVSVAYPSF-TFNYLALRPALLAAHPWTLITHIFVHADMAHLLFNMIFL 114
Query: 189 YFFGMSIGRTLGPEYLLKLYM 209
+FFG + R +G L++++
Sbjct: 115 FFFGTELERRVGESRFLQIFI 135
>gi|319781309|ref|YP_004140785.1| rhomboid family protein [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317167197|gb|ADV10735.1| Rhomboid family protein [Mesorhizobium ciceri biovar biserrulae
WSM1271]
Length = 266
Score = 40.4 bits (93), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 87/216 (40%), Gaps = 51/216 (23%)
Query: 118 LRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH----------- 166
LR V GLI+AN V+++ + F +N + L F+ +H
Sbjct: 11 LRHIRLQYVTIGLIVANALVYLVTALGGESF-SNAAVLGL-GFIPSVVHDTAELDPRFIV 68
Query: 167 -----TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
+ +T +F H D+ H+ NM+ L+ FG ++ LG L Y+ AI G+ F
Sbjct: 69 IPESLSYLTYSFLHADIFHLGGNMLFLWVFGDNVEDALGHIRYLIFYLLCAIAGAAF--- 125
Query: 222 YHAFLAMSSK----------------------RQGMWVVD----PSRTPA---LGVFLIG 252
+A S+ R +WV+ P R PA L ++++
Sbjct: 126 -QGLVAWDSQVPLIGASGAIAGVVVAYLILYPRVKVWVLAFARIPLRIPAFIPLILWVLF 184
Query: 253 KDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRG 288
+ ++ G IS + H+GG A+ +R RG
Sbjct: 185 QVVMFAAGGEDQISWACHIGGIIAGAVLVLVLRSRG 220
>gi|302535555|ref|ZP_07287897.1| conserved hypothetical protein [Streptomyces sp. C]
gi|302444450|gb|EFL16266.1| conserved hypothetical protein [Streptomyces sp. C]
Length = 290
Score = 40.4 bits (93), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 158 DNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
+ +G+ H L+TS F H++ HI NM+ L+ G + LG L LY+ +GGS
Sbjct: 116 EGISTGQYHRLLTSVFLHVEWWHIFGNMLALWVIGGPLEAALGRVRYLALYLLSGLGGSA 175
Query: 218 FYLVY 222
LVY
Sbjct: 176 --LVY 178
>gi|359460821|ref|ZP_09249384.1| rhomboid family protein [Acaryochloris sp. CCMEE 5410]
Length = 537
Score = 40.4 bits (93), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 26/135 (19%)
Query: 93 GKVLFFRAQFPERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANN 152
G LF + P+R R R + W S + GLI+ N A F+ I + AN
Sbjct: 307 GDALF--VELPDRE----RQRVKIW-----QSPITLGLIVINLAFFVAEVILGSR--ANG 353
Query: 153 FTISLD-------------NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTL 199
+ D ++G L+ +AF H ++H+ NM GL G + + L
Sbjct: 354 LNLGTDTNALYTLGALIPSEVVAGDWWRLLAAAFLHFGIQHLSLNMFGLALLGPFVEKML 413
Query: 200 GPEYLLKLYMAGAIG 214
G L Y+ AIG
Sbjct: 414 GTWRFLVSYLMTAIG 428
>gi|213962486|ref|ZP_03390748.1| transmembrane rhomboid family protein [Capnocytophaga sputigena
Capno]
gi|213954812|gb|EEB66132.1| transmembrane rhomboid family protein [Capnocytophaga sputigena
Capno]
Length = 264
Score = 40.4 bits (93), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 21/128 (16%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV----- 221
TL T AF HI +EH+ NM+ L+F G R + L Y +GG + +L+
Sbjct: 58 TLFTYAFYHISIEHLFWNMLFLFFSGHIFFRLFKTKIFLNTYFFSLMGGGIAFLLWGHIS 117
Query: 222 ----YHAFLAMSSKRQGMWVVDPSRTPALGVFLIG-----------KDMLRIIEGNSNIS 266
Y+A L S+ G+ + P+ +++ + I+ ++NI
Sbjct: 118 PETNYNALLGASAAVIGLLFFVVTIFPSYKIYVFTFRIQLLYFLLALILFDCIDISTNIG 177
Query: 267 GS-AHLGG 273
G AH GG
Sbjct: 178 GKIAHFGG 185
>gi|116754601|ref|YP_843719.1| rhomboid family protein [Methanosaeta thermophila PT]
gi|116666052|gb|ABK15079.1| Rhomboid family protein [Methanosaeta thermophila PT]
Length = 205
Score = 40.4 bits (93), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIGGSVFYLVYHAF 225
TL+T F H D+ H+ NM+ L FFG + R +G +LL + +G GG + LV +
Sbjct: 61 TLVTHIFVHADIGHLFWNMLALLFFGTELERRVGERNFLLVFFASGIFGGIIEMLVATGY 120
Query: 226 LAMSS 230
+ +S
Sbjct: 121 MMGAS 125
>gi|443900175|dbj|GAC77502.1| integral membrane protease of the rhomboid family [Pseudozyma
antarctica T-34]
Length = 444
Score = 40.4 bits (93), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADPK---FMANNFTISLDNFLSGRLHTLITSAFSHIDVE 179
S +VV ++ N AVF+ W +A + +M NF L S R+ TL+TS FSH +
Sbjct: 213 SKQVVLPIVALNAAVFVAWTVAARRGGGWMMRNF---LHRPSSNRMRTLLTSVFSHQTLI 269
Query: 180 HIVSNMIGLYFFG 192
H N + L+ FG
Sbjct: 270 HFGLNNMALWSFG 282
>gi|409124135|ref|ZP_11223530.1| rhomboid family protein [Gillisia sp. CBA3202]
Length = 215
Score = 40.4 bits (93), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 60/139 (43%), Gaps = 29/139 (20%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMA----------- 210
+G + + TS F H+D H+ NM+ LYFF + LG + +Y+A
Sbjct: 41 AGAKYQIFTSGFLHVDTSHLFVNMLTLYFFANVVIYDLGSLGFILVYLASLILGNLLSYF 100
Query: 211 --------GAIG--GSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIE 260
A+G G+V ++Y A L G++ + P PA VF IG +L I
Sbjct: 101 FHKNDLNYSAVGASGAVMGILYSAILLRPDMMLGLFFIIP--IPAY-VFGIGY-LLYTIY 156
Query: 261 GN----SNISGSAHLGGAA 275
G NI AH GGA
Sbjct: 157 GMKKRLGNIGHDAHFGGAV 175
>gi|336121537|ref|YP_004576312.1| Rhomboid family protein [Methanothermococcus okinawensis IH1]
gi|334856058|gb|AEH06534.1| Rhomboid family protein [Methanothermococcus okinawensis IH1]
Length = 191
Score = 40.4 bits (93), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 24/143 (16%)
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH----- 223
ITS F H H+ NM L+FFG+ + + +G LK++ I G++ YL+Y
Sbjct: 43 ITSIFIHGSFTHLFLNMFVLFFFGLRLEKWIGGANFLKIFFISGIAGNIAYLLYSYSTNQ 102
Query: 224 ------AFLAMSSKRQGMWVVDPSRTPALGVFLI------------GKDMLRII-EGNSN 264
A A+S + ++DP+ + F I G ++L +I
Sbjct: 103 YIPAVGASGAISGIIGALTILDPNMEIMIFPFPIPIKLKYATILFAGFEILCLIFSIMPT 162
Query: 265 ISGSAHLGGAAVAALAWARIRRR 287
I +AHLGG L + +R
Sbjct: 163 IGHAAHLGGLFTGMLCGKLLNKR 185
>gi|261886402|ref|ZP_06010441.1| rhomboid family protein [Campylobacter fetus subsp. venerealis str.
Azul-94]
Length = 172
Score = 40.4 bits (93), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 34/68 (50%)
Query: 158 DNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
+ F G LIT+ F H + HI+ NM LY FGM + R LG L LY+ G + S
Sbjct: 35 ELFFEGAYWQLITTMFLHGSLMHILMNMAVLYQFGMLLERYLGSVKFLLLYIVGGVITSA 94
Query: 218 FYLVYHAF 225
L Y F
Sbjct: 95 LSLSYLMF 102
>gi|212715177|ref|ZP_03323305.1| hypothetical protein BIFCAT_00066 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
gi|212661858|gb|EEB22433.1| hypothetical protein BIFCAT_00066 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
Length = 264
Score = 40.4 bits (93), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 17/133 (12%)
Query: 98 FRAQFPERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFM---LWRIADPKFMANNFT 154
F+ F RS RYRWR+ G + +++ AV++ L +IA P N+F
Sbjct: 15 FKDLFSARSM---RYRWRN-----GDPVITVAIMVICVAVWIVETLLKIAWPAGY-NSFV 65
Query: 155 ---ISLDNFLSGRLHTLITSAFSH--IDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYM 209
+ + + R T ITS F H + HI+ NM+ L+ G + R +G L LY+
Sbjct: 66 GTGVFMPALATHRPWTFITSMFLHQPASLWHILFNMLTLWCVGPVLERMMGHLPYLALYV 125
Query: 210 AGAIGGSVFYLVY 222
+GGS +V+
Sbjct: 126 LSGLGGSAGMMVW 138
>gi|65317677|ref|ZP_00390636.1| COG0705: Uncharacterized membrane protein (homolog of Drosophila
rhomboid) [Bacillus anthracis str. A2012]
Length = 167
Score = 40.4 bits (93), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIGGSVFYLV 221
LITS F H+D++H +SN I L+ G SI + LG +++ +++G +G YL+
Sbjct: 27 LITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGRFSFIIIFFLSGILGNIFSYLI 81
>gi|90961526|ref|YP_535442.1| rhomboid family integral membrane protein [Lactobacillus salivarius
UCC118]
gi|385840241|ref|YP_005863565.1| Integral membrane protein, Rhomboid family [Lactobacillus
salivarius CECT 5713]
gi|90820720|gb|ABD99359.1| Integral membrane protein, Rhomboid family [Lactobacillus
salivarius UCC118]
gi|300214362|gb|ADJ78778.1| Integral membrane protein, Rhomboid family [Lactobacillus
salivarius CECT 5713]
Length = 220
Score = 40.4 bits (93), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 161 LSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
++G+ LIT F HI ++H++ NMI LYF G + G L +Y+ I G++
Sbjct: 50 INGQYWRLITPMFIHIGLQHLLINMITLYFLGTLLENIFGKTRFLIIYLVSGICGNI 106
>gi|373501146|ref|ZP_09591512.1| hypothetical protein HMPREF9140_01630 [Prevotella micans F0438]
gi|371950201|gb|EHO68058.1| hypothetical protein HMPREF9140_01630 [Prevotella micans F0438]
Length = 302
Score = 40.4 bits (93), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 39/94 (41%), Gaps = 2/94 (2%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSG--RLHTLITSAFSHIDVEHIVS 183
V L+I N F + I + N L FL+G RL L T F H HI+
Sbjct: 7 VTRNLLIINILAFFAYEILGGMGVDLNNLFGLHFFLAGDFRLWQLFTYMFMHGGFMHILM 66
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
NM L+ FGM + GP Y+ IG V
Sbjct: 67 NMFMLWMFGMVMENVWGPRKFFFYYIVCGIGAGV 100
>gi|384190353|ref|YP_005576101.1| Integral membrane protein (Rhomboid family) [Bifidobacterium
animalis subsp. lactis BB-12]
gi|384191489|ref|YP_005577236.1| Integral membrane protein (Rhomboid family) [Bifidobacterium
animalis subsp. lactis CNCM I-2494]
gi|289177845|gb|ADC85091.1| Integral membrane protein (Rhomboid family) [Bifidobacterium
animalis subsp. lactis BB-12]
gi|340364226|gb|AEK29517.1| Integral membrane protein (Rhomboid family) [Bifidobacterium
animalis subsp. lactis CNCM I-2494]
Length = 288
Score = 40.4 bits (93), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 12/124 (9%)
Query: 106 SFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFML---WRIADPKFMAN--NFTISLDNF 160
S S R RWRS G V +I+ AV++L +R P +A F +
Sbjct: 42 SAESLRARWRS-----GEPVVTSAIILVCVAVWLLETLFRFVWPAGLAGMLGFGMMQPAS 96
Query: 161 LSGRLHTLITSAFSH--IDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
++ TL+T+ F H + HI NM+ L+ G + R +G L LYM IGG
Sbjct: 97 MTREPWTLVTAMFLHQPASLWHIGFNMLTLWSVGPVLERLMGHWAFLILYMVSGIGGDAG 156
Query: 219 YLVY 222
+++
Sbjct: 157 MMIW 160
>gi|355779952|gb|EHH64428.1| hypothetical protein EGM_17628, partial [Macaca fascicularis]
Length = 268
Score = 40.4 bits (93), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 113 RWRSWLRQYGSSEVVYGLIIANTAVFMLWRIAD-PKFMANNFTISLDNFLSGRLHT-LIT 170
+W + LR V G+ AN VF LWR+ + M FT N S L + +
Sbjct: 51 KWWNNLRD--GQRTVTGITAANVLVFCLWRVPSLQRTMIRYFT---SNPASKVLCSPKLL 105
Query: 171 SAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYM-AGAIGGSVFYL 220
S FSH + H+ +N L+ F SI LG E + LY+ AG I V Y+
Sbjct: 106 STFSHFSLFHMAANTYVLWSFSSSIVNILGQEQFMALYLSAGVISNFVSYV 156
>gi|339478320|gb|ABE94774.1| Conserved hypothetical membrane spanning protein in rhomboid family
[Bifidobacterium breve UCC2003]
Length = 244
Score = 40.4 bits (93), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 24/127 (18%)
Query: 109 SFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFL--SGRL- 165
RY+W ++G + + LI A TAV+++ + + + +L N+L G L
Sbjct: 6 EIRYQW-----EHGGPVMTWALIAACTAVWLV------EVLLGFLSPTLQNWLIYRGMLA 54
Query: 166 --------HTLITSAFSHI--DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGG 215
++TS F H + HI+ NMI LY G + R +G L LYM +GG
Sbjct: 55 PATMLAEPWAIVTSMFLHSPNSILHILFNMIALYSVGPVLERLIGHWRFLGLYMISGLGG 114
Query: 216 SVFYLVY 222
++ +V+
Sbjct: 115 ALGMMVW 121
>gi|227890613|ref|ZP_04008418.1| S54 family peptidase [Lactobacillus salivarius ATCC 11741]
gi|417788071|ref|ZP_12435754.1| GlpG protein (membrane protein of glp regulon) [Lactobacillus
salivarius NIAS840]
gi|417810486|ref|ZP_12457165.1| S54 family peptidase [Lactobacillus salivarius GJ-24]
gi|418961160|ref|ZP_13513047.1| rhomboid family integral membrane protein [Lactobacillus salivarius
SMXD51]
gi|227867551|gb|EEJ74972.1| S54 family peptidase [Lactobacillus salivarius ATCC 11741]
gi|334308248|gb|EGL99234.1| GlpG protein (membrane protein of glp regulon) [Lactobacillus
salivarius NIAS840]
gi|335349282|gb|EGM50782.1| S54 family peptidase [Lactobacillus salivarius GJ-24]
gi|380344827|gb|EIA33173.1| rhomboid family integral membrane protein [Lactobacillus salivarius
SMXD51]
Length = 220
Score = 40.4 bits (93), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 161 LSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
++G+ LIT F HI ++H++ NMI LYF G + G L +Y+ I G++
Sbjct: 50 INGQYWRLITPMFIHIGLQHLLINMITLYFLGTLLENIFGKTRFLIIYLVSGICGNI 106
>gi|182681852|ref|YP_001830012.1| rhomboid family protein [Xylella fastidiosa M23]
gi|386083155|ref|YP_005999437.1| rhomboid family protein [Xylella fastidiosa subsp. fastidiosa
GB514]
gi|417558058|ref|ZP_12209051.1| membrane protein [Xylella fastidiosa EB92.1]
gi|182631962|gb|ACB92738.1| Rhomboid family protein [Xylella fastidiosa M23]
gi|307578102|gb|ADN62071.1| rhomboid family protein [Xylella fastidiosa subsp. fastidiosa
GB514]
gi|338179302|gb|EGO82255.1| membrane protein [Xylella fastidiosa EB92.1]
Length = 202
Score = 40.4 bits (93), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 57/133 (42%), Gaps = 25/133 (18%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSI----GRTLGPEYLLKLYMAGAIGGSVF----- 218
LIT F H D+ H++ NM+ LYFFG I G G L+ GA+ S+
Sbjct: 43 LITYGFVHADISHLLFNMVTLYFFGSMIEAVMGELTGSLLTYPLFYLGALLVSILPSYIK 102
Query: 219 ------YLVYHA--------FLAMSSKRQGMWVVDPSRTPAL--GVFLIGKDMLRIIEGN 262
YL A F A+ + + VV PA+ VF +G + G+
Sbjct: 103 NQKNPKYLSLGASGAVSAVLFAAVLLQPWALIVVLFIPAPAIFYAVFYVGYSIWMGRRGD 162
Query: 263 SNISGSAHLGGAA 275
I+ SAHL GAA
Sbjct: 163 DGINHSAHLSGAA 175
>gi|427439986|ref|ZP_18924515.1| rhomboid family integral membrane protein [Pediococcus lolii NGRI
0510Q]
gi|425787818|dbj|GAC45303.1| rhomboid family integral membrane protein [Pediococcus lolii NGRI
0510Q]
Length = 229
Score = 40.4 bits (93), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 15/122 (12%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
+L TS F HI EH++ NMI LYF G + + +G L +Y+ I +V L + A
Sbjct: 63 SLFTSMFVHIGFEHLLFNMITLYFIGRLLEQVIGHGRFLLIYLLSGIFANVVSLAFAAPN 122
Query: 227 AMSSKRQ-------GMWVVDPSR------TPALGVFLIGKDMLRIIEG--NSNISGSAHL 271
++S+ G+W++ + +G ++ L I+ G +NI AHL
Sbjct: 123 SISAGASGAIFGIIGVWIMMAEQYRNYPFLAGMGRQMLIFSALGIVSGMFGTNIDIFAHL 182
Query: 272 GG 273
GG
Sbjct: 183 GG 184
>gi|423315755|ref|ZP_17293660.1| hypothetical protein HMPREF9699_00231 [Bergeyella zoohelcum ATCC
43767]
gi|405585471|gb|EKB59295.1| hypothetical protein HMPREF9699_00231 [Bergeyella zoohelcum ATCC
43767]
Length = 243
Score = 40.4 bits (93), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 127 VYGLIIANTAVFMLWRIADP---KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVS 183
V +++ N VF+L + P F+A + +S D ++ +IT F H D HI+
Sbjct: 10 VKAILLLNAIVFVLTQFLFPPLKTFLAAYYPMSQDF----KIWQIITHMFVHGDFMHILF 65
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
NM+ L+ FG + R +G + + Y +G V + V++ F
Sbjct: 66 NMLTLFSFGPVLERIMGQKKFITFYFICGLGSFVLFNVWNFF 107
>gi|443287776|ref|ZP_21026871.1| Rhomboid family protein [Micromonospora lupini str. Lupac 08]
gi|385882192|emb|CCH21804.1| Rhomboid family protein [Micromonospora lupini str. Lupac 08]
Length = 303
Score = 40.4 bits (93), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 66/155 (42%), Gaps = 32/155 (20%)
Query: 156 SLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGG 215
+L G+ + L+T+ F H V H++ NM L+ G S+ LGP LY+ +GG
Sbjct: 130 TLGGIAEGQWYRLVTAMFLHYGVIHLLLNMWALWVLGRSLEANLGPLRFGALYLIAGLGG 189
Query: 216 SVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGVFL--------IGKDMLRIIE------- 260
+V + F A +S G + T G+F +G+D+ ++I
Sbjct: 190 NV---AAYLFSAQNSATAG------ASTAVFGLFAALIIIERKLGRDISQVIPILVINLV 240
Query: 261 ---GNSNISGSAHLGGAAVAA-----LAWARIRRR 287
IS HLGG V A LA+A RR
Sbjct: 241 FTLTVPGISIPGHLGGLVVGAAMSLVLAYAPRGRR 275
>gi|304384713|ref|ZP_07367059.1| rhomboid family integral membrane protein [Pediococcus acidilactici
DSM 20284]
gi|418068986|ref|ZP_12706266.1| membrane-associated serine protease [Pediococcus acidilactici
MA18/5M]
gi|304328907|gb|EFL96127.1| rhomboid family integral membrane protein [Pediococcus acidilactici
DSM 20284]
gi|357537719|gb|EHJ21742.1| membrane-associated serine protease [Pediococcus acidilactici
MA18/5M]
Length = 229
Score = 40.4 bits (93), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 15/122 (12%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
+L TS F HI EH++ NMI LYF G + + +G L +Y+ I +V L + A
Sbjct: 63 SLFTSMFVHIGFEHLLFNMITLYFIGRLLEQVIGHGRFLLIYLLSGIFANVVSLAFAAPN 122
Query: 227 AMSSKRQ-------GMWVVDPSR------TPALGVFLIGKDMLRIIEG--NSNISGSAHL 271
++S+ G+W++ + +G ++ L I+ G +NI AHL
Sbjct: 123 SISAGASGAIFGIIGVWIMMAEQYRNYPFLAGMGRQMLIFSALGIVSGMFGTNIDIFAHL 182
Query: 272 GG 273
GG
Sbjct: 183 GG 184
>gi|158337464|ref|YP_001518639.1| rhomboid family protein [Acaryochloris marina MBIC11017]
gi|158307705|gb|ABW29322.1| rhomboid family protein [Acaryochloris marina MBIC11017]
Length = 537
Score = 40.4 bits (93), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 26/135 (19%)
Query: 93 GKVLFFRAQFPERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANN 152
G LF + P+R R R + W S + GLI+ N A F+ I + AN
Sbjct: 307 GDALF--VELPDRE----RQRVKIW-----QSPITLGLIVINLAFFVAEVILGSR--ANG 353
Query: 153 FTISLD-------------NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTL 199
+ D ++G L+ +AF H +EH+ NM GL G + + L
Sbjct: 354 LNLGTDTNALYTLGALIPSEVVAGDWWRLLAAAFLHFGIEHLSLNMFGLGLLGPFVEKML 413
Query: 200 GPEYLLKLYMAGAIG 214
G + Y+ AIG
Sbjct: 414 GTWRFIVSYLMTAIG 428
>gi|118474503|ref|YP_892056.1| rhomboid family protein [Campylobacter fetus subsp. fetus 82-40]
gi|424820726|ref|ZP_18245764.1| rhomboid family protein [Campylobacter fetus subsp. venerealis NCTC
10354]
gi|118413729|gb|ABK82149.1| rhomboid family protein [Campylobacter fetus subsp. fetus 82-40]
gi|342327505|gb|EGU23989.1| rhomboid family protein [Campylobacter fetus subsp. venerealis NCTC
10354]
Length = 172
Score = 40.4 bits (93), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 34/68 (50%)
Query: 158 DNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
+ F G LIT+ F H + HI+ NM LY FGM + R LG L LY+ G + S
Sbjct: 35 ELFFEGAYWQLITTMFLHGSLMHILMNMAVLYQFGMLLERYLGSVKFLLLYIVGGVITSA 94
Query: 218 FYLVYHAF 225
L Y F
Sbjct: 95 LSLSYLMF 102
>gi|28199124|ref|NP_779438.1| hypothetical protein PD1237 [Xylella fastidiosa Temecula1]
gi|28057222|gb|AAO29087.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
Length = 206
Score = 40.4 bits (93), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 57/133 (42%), Gaps = 25/133 (18%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSI----GRTLGPEYLLKLYMAGAIGGSVF----- 218
LIT F H D+ H++ NM+ LYFFG I G G L+ GA+ S+
Sbjct: 47 LITYGFVHADISHLLFNMVTLYFFGSMIEAVMGELTGSLLTYPLFYLGALLVSILPSYIK 106
Query: 219 ------YLVYHA--------FLAMSSKRQGMWVVDPSRTPAL--GVFLIGKDMLRIIEGN 262
YL A F A+ + + VV PA+ VF +G + G+
Sbjct: 107 NQKNPKYLSLGASGAVSAVLFAAVLLQPWALIVVLFIPAPAIFYAVFYVGYSIWMGRRGD 166
Query: 263 SNISGSAHLGGAA 275
I+ SAHL GAA
Sbjct: 167 DGINHSAHLSGAA 179
>gi|71276309|ref|ZP_00652587.1| Rhomboid-like protein [Xylella fastidiosa Dixon]
gi|170730512|ref|YP_001775945.1| hypothetical protein Xfasm12_1387 [Xylella fastidiosa M12]
gi|71162917|gb|EAO12641.1| Rhomboid-like protein [Xylella fastidiosa Dixon]
gi|71729933|gb|EAO32028.1| Rhomboid-like protein [Xylella fastidiosa Ann-1]
gi|167965305|gb|ACA12315.1| conserved hypothetical protein [Xylella fastidiosa M12]
Length = 202
Score = 40.4 bits (93), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 57/133 (42%), Gaps = 25/133 (18%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSI----GRTLGPEYLLKLYMAGAIGGSVF----- 218
LIT F H D+ H++ NM+ LYFFG I G G L+ GA+ S+
Sbjct: 43 LITYGFVHADISHLLFNMVTLYFFGSMIEAVMGELTGSLLTYPLFYLGALLVSILPSYIK 102
Query: 219 ------YLVYHA--------FLAMSSKRQGMWVVDPSRTPAL--GVFLIGKDMLRIIEGN 262
YL A F A+ + + VV PA+ VF +G + G+
Sbjct: 103 NQKNPKYLSLGASGAVSAVLFAAVLLQPWALIVVLFIPAPAIFYAVFYVGYSIWMGRRGD 162
Query: 263 SNISGSAHLGGAA 275
I+ SAHL GAA
Sbjct: 163 DGINHSAHLSGAA 175
>gi|404448305|ref|ZP_11013298.1| rhomboid family protein [Indibacter alkaliphilus LW1]
gi|403765926|gb|EJZ26801.1| rhomboid family protein [Indibacter alkaliphilus LW1]
Length = 267
Score = 40.4 bits (93), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Query: 124 SEVVYGLIIANTAVFMLWRIADP--KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHI 181
+ + L+IAN +F + P K A + + F+ ++ T + F H D H+
Sbjct: 6 TPIAKNLLIANIGLFFVTAYFVPMLKAYAALYYLGTPQFMPFQIFTYM---FMHADFWHL 62
Query: 182 VSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA 224
NM GL+ FG + + LG + L L+M IG + Y Y+A
Sbjct: 63 FGNMFGLFIFGPLLEQFLGSKRFLILWMVAGIGAGILYSGYNA 105
>gi|403252324|ref|ZP_10918634.1| Rhomboid family protein [Thermotoga sp. EMP]
gi|402812337|gb|EJX26816.1| Rhomboid family protein [Thermotoga sp. EMP]
Length = 235
Score = 40.4 bits (93), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 16/128 (12%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPE-YLLKLYMAGAIGGSVFYL 220
+G LIT+ F H + HI+ N LY+FG+ + G E +L+ + G +G ++
Sbjct: 51 AGDWFRLITALFVHGGILHILFNSYALYYFGLIVEDIYGTEKFLVGYFFTGIVGNLATHV 110
Query: 221 VYHAFLAMSSKRQ-----GMWVVDPSR-------TPALGVFLIGKDMLRIIEG---NSNI 265
YH +++ + G+ R P G+ L+ ++ ++ G +NI
Sbjct: 111 FYHDTISVGASGAIFGLIGILFAAGFRKDTPFFMKPVTGMSLLPIILINVVYGFLPGTNI 170
Query: 266 SGSAHLGG 273
+ +AHLGG
Sbjct: 171 NNAAHLGG 178
>gi|307190111|gb|EFN74267.1| Presenilins-associated rhomboid-like protein, mitochondrial
[Camponotus floridanus]
Length = 281
Score = 40.4 bits (93), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 7/114 (6%)
Query: 105 RSFASFRYRWR----SWLRQYGSSEVVY-GLIIANTAVFMLWRIADPKFMANNFTISLDN 159
R F R WR +W R + ++ + N F+ WR+ P F N
Sbjct: 50 RQFRINRTGWRGEIETWWRNLTEGQKMFVPICFINVVTFLAWRV--PAFQKTMVRYFCAN 107
Query: 160 FLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAI 213
+ ++ S FSH + H+ +NM L+ F TLG E L LY++ +
Sbjct: 108 PANATCWPMLLSTFSHYSIFHLAANMYVLHSFSTIAVTTLGKEQFLALYLSSGV 161
>gi|410684900|ref|YP_006060907.1| putative peptidase S54, rhomboid family [Ralstonia solanacearum
CMR15]
gi|299069389|emb|CBJ40655.1| putative peptidase S54, rhomboid family [Ralstonia solanacearum
CMR15]
Length = 197
Score = 40.4 bits (93), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 64/152 (42%), Gaps = 38/152 (25%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMA----------------- 210
L+T AF H V H+V NM G++ FG + R LG LY+A
Sbjct: 48 LLTYAFLHASVPHLVFNMFGMFMFGRDVERALGGARTGVLYLASVLSAAFTQMAVMGLTT 107
Query: 211 -------GAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEGNS 263
GA GG VF L+ A+ + +R + ++ P PA + + ++E
Sbjct: 108 LPAGPIVGASGG-VFGLLL-AYAVLFPRRMILLLIPPIPMPA----WLFATVYALVELTL 161
Query: 264 NISGS-------AHLGG-AAVAALAWARIRRR 287
ISGS AHLGG A L W +R R
Sbjct: 162 GISGSHRGIAHFAHLGGMAGSGVLLWRWLRGR 193
>gi|268317852|ref|YP_003291571.1| rhomboid family protein [Rhodothermus marinus DSM 4252]
gi|345304133|ref|YP_004826035.1| Rhomboid family protein [Rhodothermus marinus SG0.5JP17-172]
gi|262335386|gb|ACY49183.1| Rhomboid family protein [Rhodothermus marinus DSM 4252]
gi|345113366|gb|AEN74198.1| Rhomboid family protein [Rhodothermus marinus SG0.5JP17-172]
Length = 203
Score = 40.4 bits (93), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 143 IADPKFMANNFTISLDNFLSGR-LHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP 201
+ DP + + + + L GR H +IT+ F H+ H+ NMI L+FFG + +GP
Sbjct: 24 LVDPSLI-DRWAFRPLHILRGREYHRMITAGFVHVGWAHLAFNMITLFFFGRPMEVLMGP 82
Query: 202 EYLLKLYMAGAIGG 215
L +Y + G
Sbjct: 83 VRFLLIYFGAELAG 96
>gi|227892800|ref|ZP_04010605.1| S54 family peptidase [Lactobacillus ultunensis DSM 16047]
gi|227865441|gb|EEJ72862.1| S54 family peptidase [Lactobacillus ultunensis DSM 16047]
Length = 226
Score = 40.4 bits (93), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLA 227
L T+ F HI V H+VSN + +Y+ G I +G L Y+ IGG++F L + A
Sbjct: 59 LFTAQFLHIGVMHLVSNAVIIYYMGQYIEPIMGHYRYLATYLLAGIGGNLFSLAFSADRG 118
Query: 228 MSS 230
+S+
Sbjct: 119 LSA 121
>gi|410940231|ref|ZP_11372047.1| peptidase, S54 family [Leptospira noguchii str. 2006001870]
gi|410784675|gb|EKR73650.1| peptidase, S54 family [Leptospira noguchii str. 2006001870]
Length = 199
Score = 40.4 bits (93), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
+TL+TS F H D H++ NM+ Y FG ++ T+GP + + Y+ + SV
Sbjct: 41 YTLLTSGFIHADWMHLIFNMVSFYSFGRNLEMTVGPIWFVLFYLGTILITSV 92
>gi|375011800|ref|YP_004988788.1| hypothetical protein [Owenweeksia hongkongensis DSM 17368]
gi|359347724|gb|AEV32143.1| putative membrane protein [Owenweeksia hongkongensis DSM 17368]
Length = 251
Score = 40.4 bits (93), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 8/126 (6%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH----TLITSAFSHIDVEH 180
+V+ L+I N +F L + + +L +L G H +IT F H ++ H
Sbjct: 13 DVIKNLLIIN-GLFFLATVVLGNVAGFDLVQTLGLYLPGSPHFQPYQVITHIFMHGNLTH 71
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDP 240
I NM L+ FG ++ G + L YM +G +V +L + + AM+ +++ +V+
Sbjct: 72 IFFNMFALWMFGYTLENVWGSKRFLIYYMITGLGAAVIHLGVNYWEAMALQQE---LVNA 128
Query: 241 SRTPAL 246
TP +
Sbjct: 129 GFTPQM 134
>gi|338211723|ref|YP_004655776.1| rhomboid family protein [Runella slithyformis DSM 19594]
gi|336305542|gb|AEI48644.1| Rhomboid family protein [Runella slithyformis DSM 19594]
Length = 208
Score = 40.4 bits (93), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFG----MSIGRTLGPE---YLLKLYMAGAI 213
+ ITS F H D H++ NM LYFFG M +G GP Y L LY+ G +
Sbjct: 44 YRFITSGFIHADFGHLIFNMFSLYFFGEAMEMFLGGIFGPTGTFYYLALYLLGIV 98
>gi|396462952|ref|XP_003836087.1| hypothetical protein LEMA_P054280.1 [Leptosphaeria maculans JN3]
gi|312212639|emb|CBX92722.1| hypothetical protein LEMA_P054280.1 [Leptosphaeria maculans JN3]
Length = 599
Score = 40.4 bits (93), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADP--KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEH 180
++ + GL+IAN + + WRI P FM F + + + R + + FSH+ EH
Sbjct: 360 TTTTIGGLVIANAVIAVAWRIM-PLWPFMTRYF-MHVPGY--PRAIQSVLNVFSHVQYEH 415
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYM-AGAIG 214
+++NM+ L G + +G + Y+ AGA+G
Sbjct: 416 LLANMMALALVGPACCDLVGRGTFMATYISAGAVG 450
>gi|417918105|ref|ZP_12561658.1| peptidase, S54 family [Streptococcus parasanguinis SK236]
gi|342829096|gb|EGU63457.1| peptidase, S54 family [Streptococcus parasanguinis SK236]
Length = 225
Score = 40.4 bits (93), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
++T+ F HI +EH V NMI LY+ G G + L LY+ + G+VF ++
Sbjct: 61 IVTATFVHIGLEHFVLNMITLYYLGRLAEDLFGSKAFLALYLLSGMMGNVFVAIF 115
>gi|239622794|ref|ZP_04665825.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|317483413|ref|ZP_07942404.1| rhomboid family protein [Bifidobacterium sp. 12_1_47BFAA]
gi|239514791|gb|EEQ54658.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|316915168|gb|EFV36599.1| rhomboid family protein [Bifidobacterium sp. 12_1_47BFAA]
Length = 250
Score = 40.4 bits (93), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 109 SFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNF-------L 161
RY+W + G + + LI+A AV++L + F+A L L
Sbjct: 8 EIRYQW-----ERGGPVMTWALIVACVAVWLLEVLLG--FIAPGLRAWLMYLGMAAPVRL 60
Query: 162 SGRLHTLITSAFSHI--DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFY 219
TLITS F H + HI+ NMI LY G + R +G L LY+ +GGS+
Sbjct: 61 VAEPWTLITSMFLHAPNSLLHILFNMIALYSVGPVLERMIGHWRFLGLYVISGLGGSLGL 120
Query: 220 LVYHA 224
+V+ A
Sbjct: 121 MVWAA 125
>gi|440639423|gb|ELR09342.1| hypothetical protein GMDG_03908 [Geomyces destructans 20631-21]
Length = 559
Score = 40.4 bits (93), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 124 SEVVYGLIIA-NTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIV 182
S V G IIA N + + W + N + +S+ + R ++ +AFSH +H+
Sbjct: 342 SVVTIGSIIAFNAFILLAWHHPPAWRVLNKYFLSVPGYP--RALAVLGNAFSHQSFKHLA 399
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
NM+ ++ G + +G L LY A+ GS LV+H
Sbjct: 400 INMMMIFVMGTQLHDMIGRGNFLALYFGSAVTGSFASLVFH 440
>gi|296167263|ref|ZP_06849666.1| rhomboid family protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295897363|gb|EFG76966.1| rhomboid family protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length = 285
Score = 40.4 bits (93), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 47/109 (43%), Gaps = 12/109 (11%)
Query: 119 RQYGSSEVV-YGLIIANTAVFMLWRIADPKFMANNFTISL----DNFLSGRLHTLITSAF 173
RQ ++ V+ Y LI N F+L + A N L G+ + L TSAF
Sbjct: 67 RQRSAAPVLTYALIAINVLAFVL------QLAAGNLERQLALWPPAVADGQYYRLATSAF 120
Query: 174 SHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF-YLV 221
H H+V NM LY G + LG LY +GGSV YLV
Sbjct: 121 LHYGATHLVFNMWALYVVGPPLESWLGRLRFGALYAMSGLGGSVLVYLV 169
>gi|150397729|ref|YP_001328196.1| rhomboid family protein [Sinorhizobium medicae WSM419]
gi|150029244|gb|ABR61361.1| Rhomboid family protein [Sinorhizobium medicae WSM419]
Length = 263
Score = 40.4 bits (93), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 25/147 (17%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYM----AGAIGGSVFYLVY 222
T +T +F H D+ H+ NM+ L+ FG ++ LG L Y+ AGA + L
Sbjct: 75 TFLTYSFLHGDLSHLAMNMLFLWVFGDNVEDALGHFRFLVFYLLCAAAGAFAHGLLDLAS 134
Query: 223 HAFLAMSS--------------KRQGMWVVDPSRTP-----ALGV-FLIGKDMLRII-EG 261
A L +S + +WV+ R P A+ + F IG+ ++ +
Sbjct: 135 EAPLIGASGAISGVVAAYFLLHPKVRVWVLVLFRIPLPLPAAIPLAFWIGQQFFMLVADT 194
Query: 262 NSNISGSAHLGGAAVAALAWARIRRRG 288
+S +S SAH+GG L +RRRG
Sbjct: 195 DSGVSWSAHVGGIVAGLLLVVILRRRG 221
>gi|398831080|ref|ZP_10589259.1| putative membrane protein [Phyllobacterium sp. YR531]
gi|398212648|gb|EJM99250.1| putative membrane protein [Phyllobacterium sp. YR531]
Length = 253
Score = 40.4 bits (93), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 66/153 (43%), Gaps = 39/153 (25%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYM----------------- 209
T IT AF H D+ H+ NM+ L+ FG +I LG L Y+
Sbjct: 73 TYITYAFLHADIFHLGGNMLFLWVFGDNIEDALGHVKFLIFYLLCAAAGAFLHGVILPDS 132
Query: 210 -------AGAIGGSV-FYLVYHAFLAMSSKRQGMWVVD----PSRTPA---LGVFLIGKD 254
+GAI G V YL+ H R +WV+ P R PA L +++ +
Sbjct: 133 QAPLIGASGAIAGIVAAYLLLH-------PRVKVWVLAFGRIPLRIPAIYPLILWVAVQF 185
Query: 255 MLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 287
++ + G+ +S AH+GG AL ++RR
Sbjct: 186 VMLLWGGDQQVSWPAHVGGIIAGALLIVVLKRR 218
>gi|312866894|ref|ZP_07727107.1| peptidase, S54 family [Streptococcus parasanguinis F0405]
gi|311097677|gb|EFQ55908.1| peptidase, S54 family [Streptococcus parasanguinis F0405]
Length = 225
Score = 40.4 bits (93), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
++T+ F HI +EH V NMI LY+ G G + L LY+ + G+VF ++
Sbjct: 61 IVTATFVHIGLEHFVLNMITLYYLGRLAEDLFGSKAFLALYLLSGMMGNVFVAIF 115
>gi|183980331|ref|YP_001848622.1| serine protease [Mycobacterium marinum M]
gi|183173657|gb|ACC38767.1| rhomboid family serine protease [Mycobacterium marinum M]
Length = 289
Score = 40.4 bits (93), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF-YL 220
G+L+ L+TSAF H H+V NM LY G + LG LY A+GGSV YL
Sbjct: 108 DGQLYRLVTSAFMHYGTLHLVFNMWALYIVGPPLEMWLGRLRFGGLYALSALGGSVLVYL 167
Query: 221 V 221
+
Sbjct: 168 I 168
>gi|390450206|ref|ZP_10235800.1| rhomboid-like protein [Nitratireductor aquibiodomus RA22]
gi|389662771|gb|EIM74325.1| rhomboid-like protein [Nitratireductor aquibiodomus RA22]
Length = 255
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 33/142 (23%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
T IT +F H D+ H+ NM+ L+ FG ++ LG L Y+A A+ G+ H F+
Sbjct: 74 TYITYSFLHGDLMHLGGNMLFLWVFGDNVEDALGHFRYLIFYLACAVAGAYV----HGFI 129
Query: 227 AMSSK----------------------RQGMWVVD----PSRTPA---LGVFLIGKDMLR 257
A S R +WV+ P R PA L +++ + ++
Sbjct: 130 APDSNAPLIGASGSIAGIVAAYLILHPRVKVWVLAFARIPIRIPAFILLALWIGFQFLML 189
Query: 258 IIEGNSNISGSAHLGGAAVAAL 279
+I+ + +S +AH GG A+
Sbjct: 190 VIDTENQVSWAAHAGGILAGAV 211
>gi|334366418|ref|ZP_08515350.1| peptidase, S54 family [Alistipes sp. HGB5]
gi|390945646|ref|YP_006409406.1| hypothetical protein Alfi_0319 [Alistipes finegoldii DSM 17242]
gi|313157384|gb|EFR56807.1| peptidase, S54 family [Alistipes sp. HGB5]
gi|390422215|gb|AFL76721.1| putative membrane protein [Alistipes finegoldii DSM 17242]
Length = 202
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Query: 123 SSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSG----RLHTLITSAFSHIDV 178
+ VV LII N +FM + PK A N + G ++ IT F H +
Sbjct: 8 TPPVVLNLIIINVLIFMATALL-PK--AGNAIMEYCALSLGTPFFHVYQFITYMFLHANF 64
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF-YLVYHAF 225
EHI NM L+ FG ++ LG + L YM IG ++ YL AF
Sbjct: 65 EHIFFNMFALWMFGRTLEYELGQKRFLTYYMVCGIGAALIQYLTALAF 112
>gi|374386349|ref|ZP_09643849.1| hypothetical protein HMPREF9449_02235 [Odoribacter laneus YIT
12061]
gi|373224278|gb|EHP46618.1| hypothetical protein HMPREF9449_02235 [Odoribacter laneus YIT
12061]
Length = 305
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 75/186 (40%), Gaps = 42/186 (22%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLH-------------TLITSAFSHI 176
LI N +F+L +I + + + + NFL L T+ T F+
Sbjct: 29 LIYINIGIFLLVKIINVLVILSGQKAGVGNFLLENLGIPAYFDSLLTHPWTVFTYMFTQF 88
Query: 177 DVEHIVSNMIGLYFFG---------------MSIGRTLG-----------PEYLLKLYMA 210
D H++ NM+ LY+FG +G G P + L Y +
Sbjct: 89 DFFHLLFNMLWLYWFGSFFLNHFTQKELTGVYLLGGLCGAFTYVLAYNVLPAFELSRYYS 148
Query: 211 GAIG--GSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEGNSNISGS 268
AIG SV +V+ L + +R ++++ P + L +F D+L I N+
Sbjct: 149 WAIGASASVMAVVFAVCLYLPQQRIYIFLIGPVKLIYLALFTAAIDILSIPSSNAG-GHI 207
Query: 269 AHLGGA 274
AHLGGA
Sbjct: 208 AHLGGA 213
>gi|315222776|ref|ZP_07864663.1| peptidase, S54 family protein [Streptococcus anginosus F0211]
gi|315188139|gb|EFU21867.1| peptidase, S54 family protein [Streptococcus anginosus F0211]
Length = 226
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
L+++ F HI +EH V NMI LYF G G L LY+ I G+VF
Sbjct: 61 LVSAIFVHIGLEHFVMNMITLYFLGRQAEDIFGSWNFLFLYLMSGILGNVF 111
>gi|323340676|ref|ZP_08080928.1| rhomboid protease GluP [Lactobacillus ruminis ATCC 25644]
gi|335996819|ref|ZP_08562736.1| rhomboid family integral membrane protein [Lactobacillus ruminis
SPM0211]
gi|417974323|ref|ZP_12615144.1| rhomboid family integral membrane protein [Lactobacillus ruminis
ATCC 25644]
gi|323091799|gb|EFZ34419.1| rhomboid protease GluP [Lactobacillus ruminis ATCC 25644]
gi|335351889|gb|EGM53380.1| rhomboid family integral membrane protein [Lactobacillus ruminis
SPM0211]
gi|346329320|gb|EGX97618.1| rhomboid family integral membrane protein [Lactobacillus ruminis
ATCC 25644]
Length = 219
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 130 LIIANTAVFMLWRIA----DPKFMAN---NFTISLDNFLSGRLHTLITSAFSHIDVEHIV 182
LI N A+++L A +P + NF + N G L+T+ F HI +EH+
Sbjct: 14 LIGINVAIYLLMTFAGGSQNPGVLVRFGANFAPYVSN---GEYWRLLTAMFLHIGLEHLA 70
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS 216
NM+ LYF G S+ LG LY+ I G
Sbjct: 71 LNMLTLYFIGASLEPILGSVRFAVLYLVSGICGD 104
>gi|15613080|ref|NP_241383.1| hypothetical protein BH0517 [Bacillus halodurans C-125]
gi|10173130|dbj|BAB04236.1| BH0517 [Bacillus halodurans C-125]
Length = 248
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 25/146 (17%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLY-MAGAIGGSVFY- 219
G LIT F H+ + H+V N L FG ++ R LG L +Y ++G I Y
Sbjct: 54 QGEYWRLITPVFLHVSIGHLVFNSFALVIFGPALERMLGKGKFLFVYLLSGFIANVATYY 113
Query: 220 ---LVYHAFLAMSSKRQGMW------------VVDPSRTP-ALGVFLIGKDMLRIIEGNS 263
L Y L S G++ ++DP+ T + + +IG M + +S
Sbjct: 114 LGGLAYPYHLGASGAIFGLFGIFVYMVIYRKDLIDPANTQLVITIIIIGLVMTFL---SS 170
Query: 264 NISGSAHL----GGAAVAALAWARIR 285
NI+ AHL GGAA+A + A+ R
Sbjct: 171 NINVFAHLFGMIGGAALAPIVLAKAR 196
>gi|443670730|ref|ZP_21135859.1| Rhomboid family protein [Rhodococcus sp. AW25M09]
gi|443416665|emb|CCQ14196.1| Rhomboid family protein [Rhodococcus sp. AW25M09]
Length = 251
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 156 SLDNFL--SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAI 213
SL++ L +G L LI S F HI H++ NM LY G + LG L +Y +
Sbjct: 62 SLNSVLVANGDLFRLIGSGFVHIGPIHLLVNMFALYLIGRDVELILGRSRYLAVYFLSLL 121
Query: 214 GGSVFYLVYHAFLAMSSKRQG 234
GGS +V LA ++ G
Sbjct: 122 GGSASVMVLENPLAATAGASG 142
>gi|116256789|sp|Q2PP52.1|RHBL6_TOXGO RecName: Full=Rhomboid-like protease 6
gi|83699630|gb|ABC40721.1| rhomboid-like protease 6 [Toxoplasma gondii]
Length = 531
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 121 YGSSEVVYGLIIANTAVFMLWRIADP-------KFMANNFTISLDNFLSGRLHTLITSAF 173
Y +++ ++ N AVF WR+A F+ +F + +N R++T +TS+
Sbjct: 302 YEHRKLLGAFLMTNAAVFTGWRLAATAGNGTWWTFLMRHFVLCRENLARARIYTFVTSSL 361
Query: 174 SHIDVEHIVSNM 185
SH H++ N+
Sbjct: 362 SHKSTGHLIFNL 373
>gi|195027586|ref|XP_001986663.1| GH20399 [Drosophila grimshawi]
gi|193902663|gb|EDW01530.1| GH20399 [Drosophila grimshawi]
Length = 345
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 9/108 (8%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHT--LITSAFSHIDVEHIVSNMIG 187
L++ N F LWR+ M N + + R+ + S FSH V HI +NM
Sbjct: 145 LLVCNLLAFALWRLPA---MRNTMMTYFTSNPAARIVCWPMFLSTFSHYSVMHIFANMYV 201
Query: 188 LYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGM 235
L+ F + ++G E + +Y++ + S+ ++Y A +K+ GM
Sbjct: 202 LHSFSNAAVLSMGKEQFMAVYLSAGVFSSLMSVLYKA----GTKQPGM 245
>gi|19112976|ref|NP_596184.1| rhomboid family protease [Schizosaccharomyces pombe 972h-]
gi|74625378|sp|Q9P7D8.1|YOFA_SCHPO RecName: Full=Uncharacterized rhomboid protein P4H10.10,
mitochondrial; Flags: Precursor
gi|7363187|emb|CAB83168.1| rhomboid family protease [Schizosaccharomyces pombe]
Length = 392
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Query: 130 LIIANTAVFMLWRIADP-----------KFMANNFTISLDNFLSGRLHTLITSAFSHIDV 178
+ + N VF W +A +FM + SL N GR TL+ S FSH ++
Sbjct: 123 VCLVNGVVFWHWDLARDEAIRLHDFKRFRFMMTHAQASLFNLYEGRWWTLVVSIFSHQNL 182
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS 216
H++ N + +Y F + G L +Y+ + G+
Sbjct: 183 AHLLVNCVAIYSFLSIVVYKFGVWKALSVYLGAGVFGN 220
>gi|423135201|ref|ZP_17122847.1| hypothetical protein HMPREF9715_02622 [Myroides odoratimimus CIP
101113]
gi|371643282|gb|EHO08838.1| hypothetical protein HMPREF9715_02622 [Myroides odoratimimus CIP
101113]
Length = 216
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 26/148 (17%)
Query: 151 NNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMA 210
N + ++ G + ITS F H+D H NM+ LYFF I + G Y L +Y+A
Sbjct: 29 NQYCFDINQINRGERYRFITSGFLHVDWMHFAFNMLTLYFFADIIIQVSGVLYFLIVYVA 88
Query: 211 GAIGGSV----FY-----------------LVYHAFLAMSSKRQGMWVVDPSRTPALGVF 249
+ G++ FY ++Y + + S M+ + P PA +F
Sbjct: 89 SLLVGNILTYQFYKNQPHYRAVGASGAIMGVLYASIMLNPSMSLYMFFI-PIPIPAY-IF 146
Query: 250 LIGKDMLRII---EGNSNISGSAHLGGA 274
+G + + + N I +AH+GGA
Sbjct: 147 AVGYLLYSLYGMKKNNDGIGHTAHIGGA 174
>gi|254549044|ref|ZP_05139491.1| putative integral membrane protein [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
Length = 247
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 119 RQYGSSEVV-YGLIIANTAVFMLWRIADPKFMANNFTISL--DNFLSGRLHTLITSAFSH 175
RQ ++ VV Y LI N VF++ M ++L SG+ + L+TSAF H
Sbjct: 29 RQRSATPVVTYTLISLNALVFVM----QVTVMGLERQLALWPPAVASGQTYRLVTSAFLH 84
Query: 176 IDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF-YLV 221
H++ NM LY G + LG LY A+GGSV YL+
Sbjct: 85 YGAMHLLLNMWALYVVGPPLEMWLGRLRFGALYAVSALGGSVLVYLI 131
>gi|15607252|ref|NP_214624.1| Probable conserved integral membrane protein [Mycobacterium
tuberculosis H37Rv]
gi|31791288|ref|NP_853781.1| hypothetical protein Mb0114 [Mycobacterium bovis AF2122/97]
gi|121636023|ref|YP_976246.1| integral membrane protein [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148659873|ref|YP_001281396.1| rhomboid family protein [Mycobacterium tuberculosis H37Ra]
gi|167967299|ref|ZP_02549576.1| conserved integral membrane protein [Mycobacterium tuberculosis
H37Ra]
gi|224988496|ref|YP_002643183.1| integral membrane protein [Mycobacterium bovis BCG str. Tokyo 172]
gi|254366565|ref|ZP_04982609.1| conserved integral membrane protein [Mycobacterium tuberculosis
str. Haarlem]
gi|289441479|ref|ZP_06431223.1| conserved membrane protein [Mycobacterium tuberculosis T46]
gi|289568003|ref|ZP_06448230.1| conserved membrane protein [Mycobacterium tuberculosis T17]
gi|289572690|ref|ZP_06452917.1| rhomboid family protein [Mycobacterium tuberculosis K85]
gi|289748582|ref|ZP_06507960.1| conserved membrane protein [Mycobacterium tuberculosis T92]
gi|289756172|ref|ZP_06515550.1| rhomboid family protein [Mycobacterium tuberculosis EAS054]
gi|289760210|ref|ZP_06519588.1| rhomboid family protein [Mycobacterium tuberculosis T85]
gi|289764227|ref|ZP_06523605.1| rhomboid family protein [Mycobacterium tuberculosis GM 1503]
gi|294992953|ref|ZP_06798644.1| putative integral membrane protein [Mycobacterium tuberculosis 210]
gi|297632583|ref|ZP_06950363.1| putative integral membrane protein [Mycobacterium tuberculosis KZN
4207]
gi|297729557|ref|ZP_06958675.1| putative integral membrane protein [Mycobacterium tuberculosis KZN
R506]
gi|298527502|ref|ZP_07014911.1| rhomboid family serine protease [Mycobacterium tuberculosis
94_M4241A]
gi|306774194|ref|ZP_07412531.1| conserved membrane protein [Mycobacterium tuberculosis SUMu001]
gi|306778939|ref|ZP_07417276.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
gi|306782726|ref|ZP_07421048.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
gi|306787094|ref|ZP_07425416.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
gi|306791651|ref|ZP_07429953.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005]
gi|306798472|ref|ZP_07436774.1| conserved membrane protein [Mycobacterium tuberculosis SUMu006]
gi|306801688|ref|ZP_07438356.1| conserved membrane protein [Mycobacterium tuberculosis SUMu008]
gi|306805900|ref|ZP_07442568.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
gi|306974529|ref|ZP_07487190.1| conserved membrane protein [Mycobacterium tuberculosis SUMu010]
gi|307082237|ref|ZP_07491407.1| conserved membrane protein [Mycobacterium tuberculosis SUMu011]
gi|313656884|ref|ZP_07813764.1| putative integral membrane protein [Mycobacterium tuberculosis KZN
V2475]
gi|339630194|ref|YP_004721836.1| hypothetical protein MAF_01110 [Mycobacterium africanum GM041182]
gi|340625145|ref|YP_004743597.1| putative integral membrane protein [Mycobacterium canettii CIPT
140010059]
gi|378769856|ref|YP_005169589.1| hypothetical protein BCGMEX_0114 [Mycobacterium bovis BCG str.
Mexico]
gi|385996882|ref|YP_005915180.1| integral membrane protein [Mycobacterium tuberculosis CTRI-2]
gi|386003192|ref|YP_005921471.1| hypothetical protein MRGA423_00715 [Mycobacterium tuberculosis
RGTB423]
gi|392384830|ref|YP_005306459.1| unnamed protein product [Mycobacterium tuberculosis UT205]
gi|397671894|ref|YP_006513428.1| hypothetical protein RVBD_0110 [Mycobacterium tuberculosis H37Rv]
gi|424806593|ref|ZP_18232024.1| conserved membrane protein [Mycobacterium tuberculosis W-148]
gi|433625211|ref|YP_007258840.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140060008]
gi|31616873|emb|CAD92975.1| PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN [Mycobacterium bovis
AF2122/97]
gi|121491670|emb|CAL70128.1| Probable conserved integral membrane protein [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|134152077|gb|EBA44122.1| conserved integral membrane protein [Mycobacterium tuberculosis
str. Haarlem]
gi|148504025|gb|ABQ71834.1| Rhomboid family protein [Mycobacterium tuberculosis H37Ra]
gi|224771609|dbj|BAH24415.1| putative integral membrane protein [Mycobacterium bovis BCG str.
Tokyo 172]
gi|289414398|gb|EFD11638.1| conserved membrane protein [Mycobacterium tuberculosis T46]
gi|289537121|gb|EFD41699.1| rhomboid family protein [Mycobacterium tuberculosis K85]
gi|289541756|gb|EFD45405.1| conserved membrane protein [Mycobacterium tuberculosis T17]
gi|289689169|gb|EFD56598.1| conserved membrane protein [Mycobacterium tuberculosis T92]
gi|289696759|gb|EFD64188.1| rhomboid family protein [Mycobacterium tuberculosis EAS054]
gi|289711733|gb|EFD75749.1| rhomboid family protein [Mycobacterium tuberculosis GM 1503]
gi|289715774|gb|EFD79786.1| rhomboid family protein [Mycobacterium tuberculosis T85]
gi|298497296|gb|EFI32590.1| rhomboid family serine protease [Mycobacterium tuberculosis
94_M4241A]
gi|308217202|gb|EFO76601.1| conserved membrane protein [Mycobacterium tuberculosis SUMu001]
gi|308328061|gb|EFP16912.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
gi|308332433|gb|EFP21284.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
gi|308336197|gb|EFP25048.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
gi|308339800|gb|EFP28651.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005]
gi|308341295|gb|EFP30146.1| conserved membrane protein [Mycobacterium tuberculosis SUMu006]
gi|308347577|gb|EFP36428.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
gi|308351519|gb|EFP40370.1| conserved membrane protein [Mycobacterium tuberculosis SUMu008]
gi|308356167|gb|EFP45018.1| conserved membrane protein [Mycobacterium tuberculosis SUMu010]
gi|308360107|gb|EFP48958.1| conserved membrane protein [Mycobacterium tuberculosis SUMu011]
gi|326905869|gb|EGE52802.1| conserved membrane protein [Mycobacterium tuberculosis W-148]
gi|339329550|emb|CCC25185.1| putative conserved integral membrane protein [Mycobacterium
africanum GM041182]
gi|340003335|emb|CCC42454.1| putative conserved integral membrane protein [Mycobacterium
canettii CIPT 140010059]
gi|341600039|emb|CCC62707.1| probable conserved integral membrane protein [Mycobacterium bovis
BCG str. Moreau RDJ]
gi|344217928|gb|AEM98558.1| integral membrane protein [Mycobacterium tuberculosis CTRI-2]
gi|356592177|gb|AET17406.1| Conserved integral membrane protein [Mycobacterium bovis BCG str.
Mexico]
gi|378543381|emb|CCE35652.1| unnamed protein product [Mycobacterium tuberculosis UT205]
gi|380723680|gb|AFE11475.1| putative integral membrane protein [Mycobacterium tuberculosis
RGTB423]
gi|395136798|gb|AFN47957.1| hypothetical protein RVBD_0110 [Mycobacterium tuberculosis H37Rv]
gi|432152817|emb|CCK50026.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140060008]
gi|440579558|emb|CCG09961.1| putative CONSERVED INTEGRAL membrane protein [Mycobacterium
tuberculosis 7199-99]
gi|444893582|emb|CCP42835.1| Probable conserved integral membrane protein [Mycobacterium
tuberculosis H37Rv]
Length = 249
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 119 RQYGSSEVV-YGLIIANTAVFMLWRIADPKFMANNFTISL--DNFLSGRLHTLITSAFSH 175
RQ ++ VV Y LI N VF++ M ++L SG+ + L+TSAF H
Sbjct: 31 RQRSATPVVTYTLISLNALVFVM----QVTVMGLERQLALWPPAVASGQTYRLVTSAFLH 86
Query: 176 IDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF-YLV 221
H++ NM LY G + LG LY A+GGSV YL+
Sbjct: 87 YGAMHLLLNMWALYVVGPPLEMWLGRLRFGALYAVSALGGSVLVYLI 133
>gi|434393813|ref|YP_007128760.1| Rhomboid family protein [Gloeocapsa sp. PCC 7428]
gi|428265654|gb|AFZ31600.1| Rhomboid family protein [Gloeocapsa sp. PCC 7428]
Length = 200
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 67/169 (39%), Gaps = 21/169 (12%)
Query: 127 VYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMI 186
V+ LII N VF+ R+ F+ N + N S + TS F H + HI N+
Sbjct: 19 VFTLIIINLVVFVADRVLGIPFIQNLYL----NHASPAWYQFFTSMFCHANWAHISGNLF 74
Query: 187 GLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA----FLAMSSKRQGMWVVDP-- 240
LY FG + G ++ Y+ +GGS+ +H L S G++ V
Sbjct: 75 FLYIFGRIVEEEEGVIGVVSSYIICGLGGSLMSYFFHGGAVYSLGASGAVFGLFAVSVLI 134
Query: 241 ---------SRTPALGVFLIGKDM--LRIIEGNSNISGSAHLGGAAVAA 278
LG F+I + + LR + AHLGGA V
Sbjct: 135 KLSWHWRKILEVLILGQFVIERVVFELRQTGIQDGVDHIAHLGGALVGV 183
>gi|334702540|ref|ZP_08518406.1| GlpG protein [Aeromonas caviae Ae398]
Length = 288
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 118 LRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHID 177
L Q G +V +IIA A++ L I P F F +L F + +T AF H
Sbjct: 104 LHQAGPLTLV--VIIACLAIYALDAIGLPIFDELAFHPTLAQFTDWQAWRYVTPAFIHFS 161
Query: 178 VEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGA 212
V H+V N++ ++ G I + LG L L + GA
Sbjct: 162 VLHLVFNLLWWWYLGGQIEQRLGSGKLFILLIVGA 196
>gi|347831209|emb|CCD46906.1| similar to rhomboid [Botryotinia fuckeliana]
Length = 339
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 146 PKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM 185
P++ NF +S N GR+HTLIT +F H H+ +NM
Sbjct: 163 PEYFEKNFVLSQQNIDEGRIHTLITHSFMHQTYYHLFANM 202
>gi|157273306|gb|ABV27205.1| integral membrane protein Rhomboid family protein [Candidatus
Chloracidobacterium thermophilum]
Length = 386
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 128 YGLIIANTAVFMLWRIA----DPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVS 183
Y LI N +F+L A DP+ + + G L L+ F HI V H+V+
Sbjct: 36 YVLIGINVVMFLLTAFAGGSTDPEVLTAFGACNRKLIAQGELWRLVVPMFLHIGVIHLVA 95
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
NM L+ G + G LY+ IGG V
Sbjct: 96 NMYALWVVGPQLESLYGSARFTILYVLSGIGGFV 129
>gi|365860674|ref|ZP_09400469.1| hypothetical protein SPW_0771 [Streptomyces sp. W007]
gi|364009831|gb|EHM30776.1| hypothetical protein SPW_0771 [Streptomyces sp. W007]
Length = 220
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
G+ + L+TS F H +V HI NM+GL++ G + LG L LY+ + GS
Sbjct: 53 EGQWYRLVTSMFLHQEVVHIAFNMLGLWWLGGQLEAALGRSRYLALYLLSGLAGSAL 109
>gi|322390373|ref|ZP_08063896.1| rhomboid family protein [Streptococcus parasanguinis ATCC 903]
gi|321142914|gb|EFX38369.1| rhomboid family protein [Streptococcus parasanguinis ATCC 903]
Length = 225
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
++T+ F HI +EH V NMI LY+ G G + L LY+ + G+VF ++
Sbjct: 61 IVTATFVHIGLEHFVLNMITLYYLGRLAEDLFGSKAFLALYLLSGMMGNVFVAIF 115
>gi|337282820|ref|YP_004622291.1| rhomboid family protein [Streptococcus parasanguinis ATCC 15912]
gi|335370413|gb|AEH56363.1| rhomboid family protein [Streptococcus parasanguinis ATCC 15912]
Length = 225
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
++T+ F HI +EH V NMI LY+ G G + L LY+ + G+VF ++
Sbjct: 61 IVTATFVHIGLEHFVLNMITLYYLGRLAEDLFGSKAFLALYLLSGMMGNVFVAIF 115
>gi|221485482|gb|EEE23763.1| peptidase S54 family protein [Toxoplasma gondii GT1]
Length = 567
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 121 YGSSEVVYGLIIANTAVFMLWRIADP-------KFMANNFTISLDNFLSGRLHTLITSAF 173
Y +++ ++ N AVF WR+A F+ +F + +N R++T +TS+
Sbjct: 302 YEHRKLLGAFLMTNAAVFTGWRLAATAGNGTWWTFLMRHFVLCRENLARARIYTFVTSSL 361
Query: 174 SHIDVEHIVSNM 185
SH H++ N+
Sbjct: 362 SHKSTGHLIFNL 373
>gi|405984124|ref|ZP_11042428.1| hypothetical protein HMPREF9451_01546 [Slackia piriformis YIT
12062]
gi|404388260|gb|EJZ83343.1| hypothetical protein HMPREF9451_01546 [Slackia piriformis YIT
12062]
Length = 294
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAI-GGSVFYL 220
+ L+ +T F H+D+ H+ NM+ LY G + + LG + LY G I G +V YL
Sbjct: 118 AADLYRFVTPMFLHLDLMHLAFNMVALYSVGALLEQVLGKANFVLLYFIGGITGNAVSYL 177
Query: 221 VYHAFLAMSSKRQGMWVVDPSRTPALGVFL 250
V A GM V + T G+F+
Sbjct: 178 VGMA-------DGGMTVSAGASTSVFGLFV 200
>gi|440731021|ref|ZP_20911068.1| hypothetical protein A989_06693 [Xanthomonas translucens DAR61454]
gi|440375422|gb|ELQ12131.1| hypothetical protein A989_06693 [Xanthomonas translucens DAR61454]
Length = 211
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 57/144 (39%), Gaps = 37/144 (25%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLG----------------------PEYL- 204
L+T F H D H++ NM+ LYFFG I R + P YL
Sbjct: 48 LLTHGFIHADFPHLLFNMVTLYFFGGPIERLMERLTGSLLTYPLFYLAALVVAILPSYLK 107
Query: 205 -------LKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPAL--GVFLIGKDM 255
L +GA+ +F A++ ++ + P PA+ +F +G +
Sbjct: 108 NQKNPNYFSLGASGAVSAVLF-----AYILLAPWTGIYFFFIPIPIPAILYALFYVGYSI 162
Query: 256 LRIIEGNSNISGSAHLGGAAVAAL 279
G NI+ SAHL GAA +
Sbjct: 163 WMDRRGGDNINHSAHLAGAAFGVM 186
>gi|411003693|ref|ZP_11380022.1| hypothetical protein SgloC_12861 [Streptomyces globisporus C-1027]
Length = 301
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 156 SLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGG 215
S++ G+ + L+TS F H +V H+ NM+GL++ G + LG L LY+ + G
Sbjct: 128 SVEGVAEGQWYRLVTSMFLHQEVVHLGFNMLGLWWLGGQLEAALGRSRYLALYLLSGLAG 187
Query: 216 SVF 218
S
Sbjct: 188 SAL 190
>gi|418886814|ref|ZP_13440962.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1150]
gi|377725767|gb|EHT49880.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1150]
Length = 314
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 61/137 (44%), Gaps = 32/137 (23%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLY-MAGAIG--- 214
N + G + ++TS F H EHI+ NM+ L+ FG + +G +L +Y +AG G
Sbjct: 23 NVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFV 82
Query: 215 --------------GSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIE 260
G++F L+ F AM M+V LG LI L I+
Sbjct: 83 SLSFNTTTISVGASGAIFGLIGSIF-AM------MYVSKTFNKKMLGQLLIA---LVILV 132
Query: 261 G----NSNISGSAHLGG 273
G SNI+ AH+GG
Sbjct: 133 GVSLFMSNINIVAHIGG 149
>gi|254459891|ref|ZP_05073307.1| peptidase, S54 (rhomboid) family [Rhodobacterales bacterium
HTCC2083]
gi|206676480|gb|EDZ40967.1| peptidase, S54 (rhomboid) family [Rhodobacteraceae bacterium
HTCC2083]
Length = 255
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 16/78 (20%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
+TL+TS F H + HI NM+ L+ FG ++ + G IG +FYLV F
Sbjct: 70 YTLVTSQFLHGGIMHIGGNMLFLWIFGDNMEDEM-----------GHIGFLIFYLVSGVF 118
Query: 226 LAMSSKRQGMWVVDPSRT 243
A++ W+V+PS T
Sbjct: 119 AALAQ-----WIVEPSST 131
>gi|419800122|ref|ZP_14325427.1| peptidase, S54 family [Streptococcus parasanguinis F0449]
gi|385696180|gb|EIG26685.1| peptidase, S54 family [Streptococcus parasanguinis F0449]
Length = 225
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
++T+ F HI +EH V NMI LY+ G G + L LY+ + G+VF ++
Sbjct: 61 IVTATFVHIGLEHFVLNMITLYYLGRLAEDLFGSKAFLALYLLSGMMGNVFVAIF 115
>gi|359776068|ref|ZP_09279385.1| peptidase S54 family protein [Arthrobacter globiformis NBRC 12137]
gi|359306508|dbj|GAB13214.1| peptidase S54 family protein [Arthrobacter globiformis NBRC 12137]
Length = 293
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 168 LITSAFSHID--VEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
++TSAF H + HIV NM L+ FG ++ LG L +Y+ AIGGSV YL+
Sbjct: 125 MLTSAFLHSQGFLLHIVLNMYTLWIFGQALEPLLGRIRFLAVYLLSAIGGSVGYLLLTPI 184
Query: 226 L 226
L
Sbjct: 185 L 185
>gi|423069423|ref|ZP_17058210.1| hypothetical protein HMPREF9682_01431 [Streptococcus intermedius
F0395]
gi|355364863|gb|EHG12591.1| hypothetical protein HMPREF9682_01431 [Streptococcus intermedius
F0395]
Length = 226
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
L+++ F HI +EH V NMI LYF G G L LY+ I G+VF
Sbjct: 61 LVSAIFVHIGLEHFVMNMITLYFIGRQAEHIFGSWNFLFLYLMSGILGNVF 111
>gi|270290405|ref|ZP_06196630.1| membrane-associated serine protease [Pediococcus acidilactici 7_4]
gi|270281186|gb|EFA27019.1| membrane-associated serine protease [Pediococcus acidilactici 7_4]
Length = 222
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 15/122 (12%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
+L TS F HI EH++ NMI LYF G + + +G L +Y+ I +V L + A
Sbjct: 56 SLFTSMFVHIGFEHLLFNMITLYFIGRLLEQVIGHGRFLLIYLLSGIFANVVSLAFAAPN 115
Query: 227 AMSSKRQ-------GMWVVDPSR------TPALGVFLIGKDMLRIIEG--NSNISGSAHL 271
++S+ G+W++ + +G ++ L I+ G +NI AHL
Sbjct: 116 SISAGASGAIFGIIGVWIMMAEQYRNYPFLAGMGRQMLIFSALGIVSGMFGTNIDIFAHL 175
Query: 272 GG 273
GG
Sbjct: 176 GG 177
>gi|443488760|ref|YP_007366907.1| rhomboid family serine protease [Mycobacterium liflandii 128FXT]
gi|442581257|gb|AGC60400.1| rhomboid family serine protease [Mycobacterium liflandii 128FXT]
Length = 254
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF-YL 220
G+L+ L+TSAF H H+V NM LY G + LG LY A+GGSV YL
Sbjct: 73 DGQLYRLVTSAFMHYGTLHLVFNMWALYIVGPPLEMWLGRLRFGGLYALSALGGSVLVYL 132
Query: 221 V 221
+
Sbjct: 133 I 133
>gi|375011801|ref|YP_004988789.1| hypothetical protein [Owenweeksia hongkongensis DSM 17368]
gi|359347725|gb|AEV32144.1| putative membrane protein [Owenweeksia hongkongensis DSM 17368]
Length = 294
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 84/199 (42%), Gaps = 47/199 (23%)
Query: 130 LIIANTAVF---MLWRIADPKF---MANNFTI-----SLDNFLSGRLHTLITSAFSHIDV 178
LI+ N AVF +L RI F +A+ FT S L+ R TL T F H
Sbjct: 21 LILVNLAVFVVFLLLRIIGFLFQIQLADIFTQWTALPSNLGTLATRPWTLFTYMFLHEGF 80
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV-YHAFLAMSSKRQGMWV 237
HI+ NM+ LYF G +G LL Y+ G + G + Y++ Y+ F + S V
Sbjct: 81 LHILFNMLWLYFGGRLFMEYMGGRRLLSTYILGGLAGGILYIIAYNLFPSFSEAV----V 136
Query: 238 VDPSRTPALGV--FLIG-----------------------------KDMLRIIEGNSNIS 266
+ +R + GV +IG D++ + +GN+
Sbjct: 137 ISNNRGASAGVMAIVIGVATYAPRYPVKIFFTLNAQLWMIAAAALLMDLIYLGDGNNAGG 196
Query: 267 GSAHLGGAAVAALAWARIR 285
AHLGGA L+ ++++
Sbjct: 197 HIAHLGGALFGYLSVSQLK 215
>gi|359771058|ref|ZP_09274523.1| rhomboid family protein [Gordonia effusa NBRC 100432]
gi|359311809|dbj|GAB17301.1| rhomboid family protein [Gordonia effusa NBRC 100432]
Length = 221
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 8/99 (8%)
Query: 126 VVYGLIIANTAVFMLWRI-ADPKFMA-------NNFTISLDNFLSGRLHTLITSAFSHID 177
V Y LI N A+F + I A+ +A + + ++ + G L+T+ F H+
Sbjct: 8 VTYTLIALNVAIFGICAIQANSTDIAVYLPPLFDRWALAGVDLAGGEYWRLLTAGFLHLS 67
Query: 178 VEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS 216
+ H+ NM+ LY G+S+ LGP +Y+ GGS
Sbjct: 68 LIHLGVNMLSLYVLGVSLEPALGPRQYTAVYLTALFGGS 106
>gi|418018722|ref|ZP_12658277.1| hypothetical protein SSALIVM18_09407 [Streptococcus salivarius M18]
gi|345526164|gb|EGX29476.1| hypothetical protein SSALIVM18_09407 [Streptococcus salivarius M18]
Length = 224
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
L+T F HI +EH + NM+ LYF G G L LY+ + G+ F L++
Sbjct: 61 LVTPIFVHIGIEHFLFNMLALYFMGKMAEHIFGTLRFLGLYLLAGVMGNAFTLLF 115
>gi|150020441|ref|YP_001305795.1| rhomboid family protein [Thermosipho melanesiensis BI429]
gi|149792962|gb|ABR30410.1| Rhomboid family protein [Thermosipho melanesiensis BI429]
Length = 223
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 56/130 (43%), Gaps = 20/130 (15%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMA-GAIG------ 214
SG+ + ++T+ F H H+V NM LYF G + G + L Y + G IG
Sbjct: 47 SGQWYRIVTAMFVHGGFIHLVFNMYALYFLGRIVENVYGTDKFLFFYFSTGIIGNLATQF 106
Query: 215 -----------GSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEGNS 263
G++F LV A +R + + P A ++ L I G S
Sbjct: 107 FYYNSFSVGASGAIFGLV-GVLFAAGFRRDTPYTLKPITGTAFLPMILVNIFLGFIPG-S 164
Query: 264 NISGSAHLGG 273
NI+ +AHLGG
Sbjct: 165 NINNAAHLGG 174
>gi|85710790|ref|ZP_01041851.1| Membrane serine peptidase [Idiomarina baltica OS145]
gi|85695194|gb|EAQ33131.1| Membrane serine peptidase [Idiomarina baltica OS145]
Length = 266
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 21/135 (15%)
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV--FYLVYHAFL 226
IT AF H HIV N+ ++ G I LG +L L++ A+ +V F + F
Sbjct: 129 ITPAFLHFSATHIVFNLFWWWYLGGRIEVYLGTRWLFALFVLTAVSANVIQFQVSGPNFG 188
Query: 227 AMSSKRQGM----WVVDPSRT------PALGVFLIGKDMLRIIEGNS-----NISGSAHL 271
MS G+ W+ R PAL +F++G +I G + N++ AHL
Sbjct: 189 GMSGVVYGLLGFCWLYSGQRNTPLKLPPALILFMLG----WLILGYTNVLWVNVANEAHL 244
Query: 272 GGAAVAALAWARIRR 286
G +A +R+
Sbjct: 245 AGLIAGCIAGITVRK 259
>gi|433629203|ref|YP_007262831.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070010]
gi|432160796|emb|CCK58126.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070010]
Length = 249
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 119 RQYGSSEVV-YGLIIANTAVFMLWRIADPKFMANNFTISL--DNFLSGRLHTLITSAFSH 175
RQ ++ VV Y LI N VF++ M ++L SG+ + L+TSAF H
Sbjct: 31 RQRSATPVVTYTLISLNALVFVM----QVTVMGLERQLALWPPAVASGQTYRLVTSAFLH 86
Query: 176 IDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF-YLV 221
H++ NM LY G + LG LY A+GGSV YL+
Sbjct: 87 YGAMHLLLNMWALYVVGPPLEMWLGRLRFGALYAVSALGGSVLVYLI 133
>gi|403727958|ref|ZP_10947871.1| rhomboid family protein [Gordonia rhizosphera NBRC 16068]
gi|403203710|dbj|GAB92202.1| rhomboid family protein [Gordonia rhizosphera NBRC 16068]
Length = 254
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 81/202 (40%), Gaps = 25/202 (12%)
Query: 101 QFPERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNF 160
QF +R + R Y + YGLI N +F++ + + +D
Sbjct: 8 QFGDRGIRPMVAKPLVASRPYAT----YGLIAVNVVIFVICALQARGVDMLRSQLFVDWA 63
Query: 161 L------SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIG 214
L G L+T+ F H V HI NM+ LY G + +G L +Y+ +G
Sbjct: 64 LYKPWVADGEYWRLLTAGFLHFSVTHIAVNMLSLYILGRDLEIAIGIPRYLGVYLTALLG 123
Query: 215 GSVFYLVYHAFLAMSSKRQG---------MWVVDPSR---TPALGVFLIGKDMLRIIEGN 262
GS +V A +++ G + VV +R TP + + ++ + I G
Sbjct: 124 GSAAVMVLGADNGVNAGASGAIYGLMGAVLVVVIKARASPTPVITIIVLNLVLSVTIPG- 182
Query: 263 SNISGSAHLGGAAVAALAWARI 284
IS AH+GG A A A I
Sbjct: 183 --ISLFAHVGGLVFGAAATAGI 202
>gi|239989111|ref|ZP_04709775.1| hypothetical protein SrosN1_17547 [Streptomyces roseosporus NRRL
11379]
gi|291446112|ref|ZP_06585502.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
gi|291349059|gb|EFE75963.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
Length = 300
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 156 SLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLY-MAGAIG 214
S++ G+ + L+TS F H ++ HI NM+GL++ G + LG L LY ++G G
Sbjct: 128 SIEGVAEGQWYRLVTSMFLHQELMHIGFNMLGLWWLGGQLEAALGRSRYLALYLLSGFAG 187
Query: 215 GSVFYLV 221
++ YL+
Sbjct: 188 SALTYLI 194
>gi|387880413|ref|YP_006310716.1| rhomboid family membrane protein [Streptococcus parasanguinis
FW213]
gi|386793861|gb|AFJ26896.1| rhomboid family membrane protein [Streptococcus parasanguinis
FW213]
Length = 225
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
++T+ F HI +EH V NMI LY+ G G + L LY+ + G+VF ++
Sbjct: 61 IVTATFVHIGLEHFVLNMITLYYLGRLAEDLFGSKAFLALYLLSGMMGNVFVAIF 115
>gi|83748711|ref|ZP_00945727.1| Integral membrane protein (Rhomboid family) [Ralstonia solanacearum
UW551]
gi|83724601|gb|EAP71763.1| Integral membrane protein (Rhomboid family) [Ralstonia solanacearum
UW551]
Length = 224
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 65/152 (42%), Gaps = 38/152 (25%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMA----------------- 210
L+T AF H V H+V NM G++ FG + RTLG LY+A
Sbjct: 75 LLTYAFLHASVPHLVFNMFGMFMFGRDVERTLGRVRTGVLYVASVLSAAFTQIAVMGLST 134
Query: 211 -------GAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEGNS 263
GA GG VF L+ A+ + +R + + P PA + + +IE
Sbjct: 135 VPAGPIVGASGG-VFGLLL-AYAVLFPRRMILLLFPPIPMPA----WLFATVYALIELTL 188
Query: 264 NISGS-------AHLGG-AAVAALAWARIRRR 287
+SGS AHLGG A L W +RRR
Sbjct: 189 GLSGSAGHIAHFAHLGGMAGSGVLLWRWLRRR 220
>gi|424814495|ref|ZP_18239673.1| uncharacterized membrane protein, rhomboid family [Candidatus
Nanosalina sp. J07AB43]
gi|339758111|gb|EGQ43368.1| uncharacterized membrane protein, rhomboid family [Candidatus
Nanosalina sp. J07AB43]
Length = 335
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 138 FMLWRIADPKFMANN-------FTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYF 190
FML+ P+ ++ N T+ D L + + T +H + H+ +NM YF
Sbjct: 128 FMLFPNLTPQALSQNPLTEAAATTLGYDPTLLTQPWGIATVMLAHGGLLHLFANMATFYF 187
Query: 191 FGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
FG ++ + +G + LLK Y+ + S+ Y++++ L
Sbjct: 188 FGSALEKAIGSKKLLKFYIGTGLIASIAYILFNNLL 223
>gi|300725858|ref|ZP_07059322.1| rhomboid family protein [Prevotella bryantii B14]
gi|299776846|gb|EFI73392.1| rhomboid family protein [Prevotella bryantii B14]
Length = 315
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
+++ L+T F H +HI+ NM L+ FG + R GP+ L Y+ +G +
Sbjct: 46 QVYQLVTYMFMHAGWQHIIFNMFALWMFGCVVERVWGPKKFLFYYIFTGVGAGI 99
>gi|429747512|ref|ZP_19280777.1| peptidase, S54 family [Capnocytophaga sp. oral taxon 380 str.
F0488]
gi|429163022|gb|EKY05284.1| peptidase, S54 family [Capnocytophaga sp. oral taxon 380 str.
F0488]
Length = 208
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 68/169 (40%), Gaps = 20/169 (11%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
+ + +I+ T + +P F N + ++ G L++S F H + EH++ N
Sbjct: 2 NITFIIILLATIAMSYYGFNNPTFF-NRYKFNVGAVQKGDYVRLVSSGFLHANWEHLIFN 60
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV------YHAFLAMSSKRQGMWVV 238
MI LYFF I ++G L +Y GSVF L Y++ + S G+
Sbjct: 61 MISLYFFQDVIISSMGNLMFLLIYFGSMFLGSVFSLYIYKKQPYYSAIGASGAVSGIIFA 120
Query: 239 DPSRTPA-----------LGVFLIGKDMLRII--EGNSNISGSAHLGGA 274
+ P G G + + + N+ +AHLGGA
Sbjct: 121 AIALYPTALSVNFLPGWLFGALYFGYSVFMMFNPQQGYNLGHAAHLGGA 169
>gi|219682564|ref|YP_002468947.1| hypothetical protein BLA_0068 [Bifidobacterium animalis subsp.
lactis AD011]
gi|219620214|gb|ACL28371.1| membrane spanning protein [Bifidobacterium animalis subsp. lactis
AD011]
Length = 266
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 12/124 (9%)
Query: 106 SFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFML---WRIADPKFMAN--NFTISLDNF 160
S S R RWRS G V +I+ AV++L +R P +A F +
Sbjct: 20 SAESLRARWRS-----GEPVVTSAIILVCVAVWLLETLFRFVWPAGLAGMLGFGMMQPAS 74
Query: 161 LSGRLHTLITSAFSH--IDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
++ TL+T+ F H + HI NM+ L+ G + R +G L LYM IGG
Sbjct: 75 MTREPWTLVTAMFLHQPASLWHIGFNMLTLWSVGPVLERLMGHWAFLILYMVSGIGGDAG 134
Query: 219 YLVY 222
+++
Sbjct: 135 MMIW 138
>gi|126730928|ref|ZP_01746737.1| rhomboid family protein [Sagittula stellata E-37]
gi|126708644|gb|EBA07701.1| rhomboid family protein [Sagittula stellata E-37]
Length = 247
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 8/99 (8%)
Query: 126 VVYGLIIANTAVFM--LWRIADPKFMANNFTISL-DNFLSGRL--HTLITSAFSHIDVEH 180
V Y LI N+ VF+ L I D F+A T SL FLS L+TS F H H
Sbjct: 16 VTYALIAINSVVFLMTLDAINDLNFLA---TYSLVPRFLSEGFGYQGLLTSMFLHGGWMH 72
Query: 181 IVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFY 219
I+ NM+ LY FG ++ +G L Y+A +G + +
Sbjct: 73 IIGNMLYLYIFGDNLEDRMGHVPFLLFYLAAGLGAGLIH 111
>gi|335031965|ref|ZP_08525378.1| peptidase, S54 family [Streptococcus anginosus SK52 = DSM 20563]
gi|333768247|gb|EGL45446.1| peptidase, S54 family [Streptococcus anginosus SK52 = DSM 20563]
Length = 226
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
L+++ F HI +EH V NMI LYF G G L LY+ I G+VF
Sbjct: 61 LVSAIFVHIGLEHFVMNMITLYFIGRQAEDIFGSWNFLFLYLMSGILGNVF 111
>gi|326335850|ref|ZP_08202029.1| S54 family peptidase [Capnocytophaga sp. oral taxon 338 str. F0234]
gi|325691994|gb|EGD33954.1| S54 family peptidase [Capnocytophaga sp. oral taxon 338 str. F0234]
Length = 209
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 20/134 (14%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV------ 221
LI+S F H + EH++ NMI LYFF I +G L +Y+ + G++F L
Sbjct: 46 LISSGFLHANWEHLIFNMISLYFFHGIIIHGMGSFIFLLIYLGSIVFGNLFSLYIYRHQS 105
Query: 222 YHAFLAMSSKRQGMWVVDPSRTPALGV-FLIG------------KDMLRIIEGNSNISGS 268
Y++ + S G+ + P L V F+ G ML +G+ N+ +
Sbjct: 106 YYSAIGASGGVSGIIFAAIALFPYLQVNFIPGWFFGTLYFSYSVYMMLNPRQGD-NLGHA 164
Query: 269 AHLGGAAVAALAWA 282
AHLGGA +A A
Sbjct: 165 AHLGGAIFGLVAIA 178
>gi|291561790|emb|CBL40590.1| Uncharacterized membrane protein (homolog of Drosophila rhomboid)
[butyrate-producing bacterium SS3/4]
Length = 206
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 120 QYGSSEVVYGLIIANTAVFMLW-----RIADPKFMANNFTISLDNFL-SGRLHTLITSAF 173
+YG V GL+IA +F L+ D FM + L G + L+T+ F
Sbjct: 4 RYGKKAYVNGLLIALNVLFFLYLEITDSSEDAYFMYTKGAMFAPAVLEDGEYYRLLTAMF 63
Query: 174 SHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIG 214
H + HI++NM+ L+ G ++ R LG L Y+ IG
Sbjct: 64 MHFGIRHIMNNMLVLFVIGDNLERALGHVKYLIFYLLCGIG 104
>gi|227494200|ref|ZP_03924516.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
gi|226831934|gb|EEH64317.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
Length = 309
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 54/127 (42%), Gaps = 18/127 (14%)
Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV------- 221
+T H + H+ NM LY G S+ R LG L LY+A +GGS+ L+
Sbjct: 135 LTVMLVHGGLIHLALNMYSLYLVGNSLERVLGTYRYLALYVASGLGGSLAVLLWAMVSLD 194
Query: 222 --YHAFLAMSSKRQGM----WVVDPS---RTPALGVFLIGKDMLRIIEGNSNISGSAHLG 272
YH + S G+ +VV A+G+ L L SN+S HLG
Sbjct: 195 SFYHVTVGASGAIFGLFAAVYVVQRKSGMDARAMGILLAVNLALGFTI--SNVSWQGHLG 252
Query: 273 GAAVAAL 279
G V AL
Sbjct: 253 GMIVGAL 259
>gi|374815406|ref|ZP_09719143.1| rhomboid family protein [Treponema primitia ZAS-1]
Length = 207
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 7/106 (6%)
Query: 120 QYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFL--SGRLHTLITSAFSHID 177
Y VV +I N V+++ RI +P+F + ++L+ L G +T F+H
Sbjct: 9 HYRYDNVVLYIIGINVLVYIMQRI-NPRFTS---YLALNPILIQRGFYWQFVTYMFAHGG 64
Query: 178 VEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMA-GAIGGSVFYLVY 222
+ HI+ NM+ L+ FG + R +G + L Y++ G + G + +++Y
Sbjct: 65 ISHILFNMLALFIFGAQVERRMGSKEFLVYYLSTGILAGFLSFVIY 110
>gi|424811466|ref|ZP_18236717.1| glycyl-tRNA synthetase, class II [Candidatus Nanosalinarum sp.
J07AB56]
gi|339757192|gb|EGQ40773.1| glycyl-tRNA synthetase, class II [Candidatus Nanosalinarum sp.
J07AB56]
Length = 501
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL 226
TL++ H H+++NM+ LYFFG ++ R + LK Y+ + S+ ++++ L
Sbjct: 333 TLLSVMVLHGSPFHLLANMVTLYFFGTALERVMDKADYLKFYIGSGVAASIGFVLFRNLL 392
Query: 227 AMSSK 231
+S +
Sbjct: 393 EVSGQ 397
>gi|433679790|ref|ZP_20511478.1| hypothetical protein BN444_03821 [Xanthomonas translucens pv.
translucens DSM 18974]
gi|430815094|emb|CCP42093.1| hypothetical protein BN444_03821 [Xanthomonas translucens pv.
translucens DSM 18974]
Length = 211
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 57/144 (39%), Gaps = 37/144 (25%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLG----------------------PEYL- 204
L+T F H D H++ NM+ LYFFG I R + P YL
Sbjct: 48 LLTHGFIHADFPHLLFNMVTLYFFGGPIERLMERLTGSLLTYPLFYLAALVVAILPSYLK 107
Query: 205 -------LKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPAL--GVFLIGKDM 255
L +GA+ +F A++ ++ + P PA+ +F +G +
Sbjct: 108 NQKNPNYFSLGASGAVSAVLF-----AYILLAPWTGIYFFFIPIPIPAILYALFYVGYSI 162
Query: 256 LRIIEGNSNISGSAHLGGAAVAAL 279
G NI+ SAHL GAA +
Sbjct: 163 WMDRRGGDNINHSAHLAGAAFGVM 186
>gi|380692747|ref|ZP_09857606.1| rhomboid family protein [Bacteroides faecis MAJ27]
Length = 300
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 29/136 (21%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH--- 223
+L+T F H HI+ NM+ LY+FG ++L +Y+ G I G +FY+ +
Sbjct: 68 SLLTYMFMHAGFLHILFNMLWLYWFGSLFLYFFSGKHLRGVYVLGGICGGLFYMAAYNIF 127
Query: 224 --------------------AFLAMSSKRQ-----GMWVVDPSRTPALGVFLIGKDMLRI 258
A +A ++ R+ +++ R L + +IG D+L I
Sbjct: 128 PYFSEVLPHATLVGASASVLAIVAATAYREPNYRVQLFLFGAVRLKYLALIVIGTDLLFI 187
Query: 259 IEGNSNISGSAHLGGA 274
N+ AHLGGA
Sbjct: 188 TSNNAG-GHIAHLGGA 202
>gi|218131484|ref|ZP_03460288.1| hypothetical protein BACEGG_03102 [Bacteroides eggerthii DSM 20697]
gi|317476444|ref|ZP_07935693.1| rhomboid family protein [Bacteroides eggerthii 1_2_48FAA]
gi|217986416|gb|EEC52753.1| peptidase, S54 family [Bacteroides eggerthii DSM 20697]
gi|316907470|gb|EFV29175.1| rhomboid family protein [Bacteroides eggerthii 1_2_48FAA]
Length = 296
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 29/136 (21%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH--- 223
+++T F H V HI+ NM+ LY+FG ++L +Y+ G I G + Y+ +
Sbjct: 68 SILTYMFMHAGVLHILFNMLWLYWFGALFLNFFSAKHLRGVYILGGICGGILYMAAYNIF 127
Query: 224 --------------------AFLAMSSKRQG-----MWVVDPSRTPALGVFLIGKDMLRI 258
A +A ++ R+ +++ R L + ++G D+L I
Sbjct: 128 PYFQPMTEYSFMLGASASVLAIVAATAYREPNYPIRLFLFGTIRLKYLALIVVGMDLLFI 187
Query: 259 IEGNSNISGSAHLGGA 274
N+ AHLGGA
Sbjct: 188 TSSNAG-GHIAHLGGA 202
>gi|421489645|ref|ZP_15937022.1| peptidase, S54 family [Streptococcus anginosus SK1138]
gi|400374712|gb|EJP27628.1| peptidase, S54 family [Streptococcus anginosus SK1138]
Length = 226
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
L+++ F HI +EH V NMI LYF G G L LY+ I G+VF
Sbjct: 61 LVSAIFVHIGLEHFVMNMITLYFIGRQAEDIFGSWNFLFLYLMSGILGNVF 111
>gi|395238215|ref|ZP_10416153.1| Possible membrane protein [Lactobacillus gigeriorum CRBIP 24.85]
gi|394477919|emb|CCI86130.1| Possible membrane protein [Lactobacillus gigeriorum CRBIP 24.85]
Length = 230
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 151 NNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMA 210
NN+T++ +G+ L T+ F HI + H+VSN + +Y+ GM + LG L +Y+
Sbjct: 45 NNYTVAA----AGQWWRLFTAQFLHIGIMHLVSNAVMIYYLGMFLEPLLGHIRFLAVYLI 100
Query: 211 GAIGGSVF 218
IGG++
Sbjct: 101 SGIGGNLL 108
>gi|365875821|ref|ZP_09415346.1| rhomboid family protein [Elizabethkingia anophelis Ag1]
gi|442587584|ref|ZP_21006400.1| hypothetical protein D505_07123 [Elizabethkingia anophelis R26]
gi|365756333|gb|EHM98247.1| rhomboid family protein [Elizabethkingia anophelis Ag1]
gi|442562755|gb|ELR79974.1| hypothetical protein D505_07123 [Elizabethkingia anophelis R26]
Length = 254
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTISLDNFLSG----RLHTLITSAFSHIDVEHIVSNM 185
L+I N +F + K + N + L F G + + +IT F H HI+ NM
Sbjct: 12 LLIVNVLLFAATYLI--KSLGVNLEVVLGAFFPGSPNFQFYQVITHMFMHGGFAHILFNM 69
Query: 186 IGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFY 219
I L+ FG +I TLGP+ Y IG V +
Sbjct: 70 IALWSFGSAIEMTLGPKKYAIFYFVCGIGAYVLF 103
>gi|183602203|ref|ZP_02963570.1| conserved membrane protein in rhomboid family [Bifidobacterium
animalis subsp. lactis HN019]
gi|387820004|ref|YP_006300047.1| integral membrane protein [Bifidobacterium animalis subsp. lactis
B420]
gi|387821658|ref|YP_006301607.1| integral membrane protein [Bifidobacterium animalis subsp. lactis
Bi-07]
gi|183218417|gb|EDT89061.1| conserved membrane protein in rhomboid family [Bifidobacterium
animalis subsp. lactis HN019]
gi|386652705|gb|AFJ15835.1| putative conserved integral membrane protein [Bifidobacterium
animalis subsp. lactis B420]
gi|386654266|gb|AFJ17395.1| putative conserved integral membrane protein [Bifidobacterium
animalis subsp. lactis Bi-07]
Length = 259
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 12/124 (9%)
Query: 106 SFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFML---WRIADPKFMAN--NFTISLDNF 160
S S R RWRS G V +I+ AV++L +R P +A F +
Sbjct: 13 SAESLRARWRS-----GEPVVTSAIILVCVAVWLLETLFRFVWPAGLAGMLGFGMMQPAS 67
Query: 161 LSGRLHTLITSAFSH--IDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
++ TL+T+ F H + HI NM+ L+ G + R +G L LYM IGG
Sbjct: 68 MTREPWTLVTAMFLHQPASLWHIGFNMLTLWSVGPVLERLMGHWAFLILYMVSGIGGDAG 127
Query: 219 YLVY 222
+++
Sbjct: 128 MMIW 131
>gi|414156375|ref|ZP_11412677.1| hypothetical protein HMPREF9186_01097 [Streptococcus sp. F0442]
gi|410870022|gb|EKS17981.1| hypothetical protein HMPREF9186_01097 [Streptococcus sp. F0442]
Length = 225
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
++T+ F HI +EH V NMI LY+ G G + L LY+ + G+VF ++
Sbjct: 61 IVTATFVHIGLEHFVLNMITLYYLGRLAEDLFGSKAFLALYLLSGMMGNVFVAIF 115
>gi|440716431|ref|ZP_20896941.1| Peptidase S54, rhomboid [Rhodopirellula baltica SWK14]
gi|436438529|gb|ELP32066.1| Peptidase S54, rhomboid [Rhodopirellula baltica SWK14]
Length = 410
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 16/106 (15%)
Query: 121 YGSSEVVY-------GLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAF 173
YG+ VY G+I ANT +F+L + + + A+++ I F +TSAF
Sbjct: 5 YGTDAPVYHYPVATIGIIAANTGLFLLTGMGE--YGAHDWLIL--EFDRINPFQWVTSAF 60
Query: 174 SHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMA-----GAIG 214
H H++ NM+ L+ FG+ I LG + LY+ GAIG
Sbjct: 61 MHASWSHLIGNMVFLWCFGLVIEGKLGWQRFSLLYLGLALADGAIG 106
>gi|329956609|ref|ZP_08297182.1| peptidase, S54 family [Bacteroides clarus YIT 12056]
gi|328523981|gb|EGF51057.1| peptidase, S54 family [Bacteroides clarus YIT 12056]
Length = 296
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 29/136 (21%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH--- 223
+++T F H V HI+ NM+ LY+FG ++L +Y+ G I G + Y+ +
Sbjct: 68 SILTYMFMHAGVMHILFNMLWLYWFGALFLSFFSAKHLRGVYILGGICGGLLYMAAYNIF 127
Query: 224 --------------------AFLAMSSKRQG-----MWVVDPSRTPALGVFLIGKDMLRI 258
A +A ++ R+ +++ R L + +IG D+L I
Sbjct: 128 PYFRPMTEYSFMLGASASVLAVVAATAYREPNYPIRLFLFGTIRLKYLALIVIGTDLLFI 187
Query: 259 IEGNSNISGSAHLGGA 274
N+ AHLGGA
Sbjct: 188 TSSNAG-GHIAHLGGA 202
>gi|260432921|ref|ZP_05786892.1| rhomboid family protein [Silicibacter lacuscaerulensis ITI-1157]
gi|260416749|gb|EEX10008.1| rhomboid family protein [Silicibacter lacuscaerulensis ITI-1157]
Length = 247
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 6/105 (5%)
Query: 123 SSEVVYGLIIANTAVFMLWR--IADPKFMAN---NFTISLDNFLSG-RLHTLITSAFSHI 176
+ VVY LI AN +F+ + + D + + ++ I G L TL+TS F H
Sbjct: 13 TPYVVYALIAANVLIFLSYVGFMDDARLINRFYFDYAIIPARISDGVALETLVTSMFLHG 72
Query: 177 DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
H++ NM+ L+ FG ++ +G L YM IG + +++
Sbjct: 73 GWMHLIGNMLFLWIFGDNLEDEMGHLPFLLFYMVAGIGAGLVHII 117
>gi|319940291|ref|ZP_08014643.1| peptidase [Streptococcus anginosus 1_2_62CV]
gi|319810593|gb|EFW06929.1| peptidase [Streptococcus anginosus 1_2_62CV]
Length = 226
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
L+++ F HI +EH V NMI LYF G G L LY+ I G+VF
Sbjct: 61 LVSAIFVHIGLEHFVMNMITLYFIGRQAEDIFGSWNFLFLYLMSGILGNVF 111
>gi|319946123|ref|ZP_08020371.1| S54 family peptidase [Streptococcus australis ATCC 700641]
gi|417920499|ref|ZP_12564005.1| peptidase, S54 family [Streptococcus australis ATCC 700641]
gi|319747769|gb|EFW00015.1| S54 family peptidase [Streptococcus australis ATCC 700641]
gi|342829248|gb|EGU63607.1| peptidase, S54 family [Streptococcus australis ATCC 700641]
Length = 228
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
L+ + F H+ ++H V NM+ LYF G G + L LY+ + G++F LV+
Sbjct: 61 LLAAMFVHVGLQHFVLNMVTLYFLGRIAEDLFGSKAFLALYLLSGLMGNLFVLVF 115
>gi|322374129|ref|ZP_08048663.1| rhomboid family protein [Streptococcus sp. C150]
gi|321277095|gb|EFX54166.1| rhomboid family protein [Streptococcus sp. C150]
Length = 224
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
L+T F HI +EH + NM+ LYF G + G L LY+ + G+ F L++
Sbjct: 61 LVTPIFVHIGLEHFLFNMLTLYFIGKMAEQIFGTLRFLGLYLLAGVMGNAFTLIF 115
>gi|91772866|ref|YP_565558.1| rhomboid-like protein [Methanococcoides burtonii DSM 6242]
gi|91711881|gb|ABE51808.1| Rhomboid family protein with AN1-like zinc finger domain
[Methanococcoides burtonii DSM 6242]
Length = 279
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 57/137 (41%), Gaps = 17/137 (12%)
Query: 167 TLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA-- 224
TLIT F H H+ NM+ L+FFG + + +G + L +Y I ++ Y + A
Sbjct: 129 TLITHMFLHASFGHLFFNMLVLFFFGRELEKRIGKDLFLYVYFISGIIAALGYSITSANN 188
Query: 225 --FLAMSSKRQGMWVVDPSRTPALGVFLIGKDM-------------LRIIEGNSNISGSA 269
+ S G++ P + V++ M ++ N ++ +A
Sbjct: 189 VPIIGASGAIMGVFAALTILAPNMEVYVYFIPMKIKYALLLFVLLDFMLLNANDMVAHTA 248
Query: 270 HLGGAAVAALAWARIRR 286
HL G V + +I++
Sbjct: 249 HLSGVLVGVIMGYKIKK 265
>gi|456387124|gb|EMF52637.1| hypothetical protein SBD_5713 [Streptomyces bottropensis ATCC
25435]
Length = 297
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 139 MLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRT 198
++ R DP+ + SL G+ + L+TS F H V HI+ NM+ L++ G +
Sbjct: 112 LIGRAWDPELGS-----SLQGVAEGQWYRLVTSMFLHGSVTHILFNMLSLWWIGGPLEAA 166
Query: 199 LGPEYLLKLYMAGAIGGSVF 218
LG L LY + GS
Sbjct: 167 LGRARYLTLYFVSGLAGSAL 186
>gi|418962228|ref|ZP_13514100.1| peptidase, S54 family [Streptococcus anginosus subsp. whileyi CCUG
39159]
gi|383346163|gb|EID24231.1| peptidase, S54 family [Streptococcus anginosus subsp. whileyi CCUG
39159]
Length = 201
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
L+++ F HI +EH V NMI LYF G G L LY+ I G+VF
Sbjct: 36 LVSAIFVHIGLEHFVMNMITLYFIGRQAEDIFGSWNFLFLYLMSGILGNVF 86
>gi|410460563|ref|ZP_11314238.1| hypothetical protein BAZO_14959 [Bacillus azotoformans LMG 9581]
gi|409926821|gb|EKN63973.1| hypothetical protein BAZO_14959 [Bacillus azotoformans LMG 9581]
Length = 507
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 28/58 (48%)
Query: 160 FLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
L G IT F HI H++ N + LY+ G+S+ R G L LY A I G V
Sbjct: 216 ILEGDWWRFITPMFLHIGFLHLLMNTLALYYLGISVERIYGTWRFLILYFAAGITGGV 273
>gi|423421597|ref|ZP_17398686.1| hypothetical protein IE3_05069 [Bacillus cereus BAG3X2-1]
gi|401097259|gb|EJQ05287.1| hypothetical protein IE3_05069 [Bacillus cereus BAG3X2-1]
Length = 190
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIGGSVFYLV 221
+ITS F H+D++H +SN I L+ G SI + LG +++ +++G IG Y++
Sbjct: 50 VITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGHFSFIIIFFLSGIIGNISSYII 104
>gi|423393314|ref|ZP_17370540.1| hypothetical protein ICG_05162 [Bacillus cereus BAG1X1-3]
gi|401630233|gb|EJS48040.1| hypothetical protein ICG_05162 [Bacillus cereus BAG1X1-3]
Length = 190
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGP-EYLLKLYMAGAIGGSVFYLV 221
+ITS F H+D++H +SN I L+ G SI + LG +++ +++G IG Y++
Sbjct: 50 VITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGHFSFIIIFFLSGIIGNISSYII 104
>gi|108802111|ref|YP_642308.1| rhomboid-like protein [Mycobacterium sp. MCS]
gi|119871264|ref|YP_941216.1| rhomboid family protein [Mycobacterium sp. KMS]
gi|108772530|gb|ABG11252.1| Rhomboid-like protein [Mycobacterium sp. MCS]
gi|119697353|gb|ABL94426.1| Rhomboid family protein [Mycobacterium sp. KMS]
Length = 289
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM 185
V + LI N VF++ + + F + G + L TSAF H H++ NM
Sbjct: 78 VTFALIAVNVLVFLMQTTSGQ--LEREFVLWTPGVADGEWYRLATSAFLHYGAMHLLFNM 135
Query: 186 IGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
LY G + LG LY A+GGSV LVY
Sbjct: 136 WALYVVGPPLEMWLGRLRFGALYALSALGGSV--LVY 170
>gi|78047064|ref|YP_363239.1| rhomboid family membrane protein [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325925108|ref|ZP_08186525.1| uncharacterized membrane protein [Xanthomonas perforans 91-118]
gi|346724352|ref|YP_004851021.1| hypothetical protein XACM_1440 [Xanthomonas axonopodis pv.
citrumelo F1]
gi|381170297|ref|ZP_09879455.1| rhomboid family protein [Xanthomonas citri pv. mangiferaeindicae
LMG 941]
gi|390989747|ref|ZP_10260042.1| rhomboid family protein [Xanthomonas axonopodis pv. punicae str.
LMG 859]
gi|418515745|ref|ZP_13081924.1| hypothetical protein MOU_02892 [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
gi|78035494|emb|CAJ23139.1| putative Rhomboid family membrane protein [Xanthomonas campestris
pv. vesicatoria str. 85-10]
gi|325544474|gb|EGD15840.1| uncharacterized membrane protein [Xanthomonas perforans 91-118]
gi|346649099|gb|AEO41723.1| Uncharacterized membrane protein [Xanthomonas axonopodis pv.
citrumelo F1]
gi|372555611|emb|CCF67017.1| rhomboid family protein [Xanthomonas axonopodis pv. punicae str.
LMG 859]
gi|380689167|emb|CCG35942.1| rhomboid family protein [Xanthomonas citri pv. mangiferaeindicae
LMG 941]
gi|410707654|gb|EKQ66105.1| hypothetical protein MOU_02892 [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
Length = 202
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 54/138 (39%), Gaps = 35/138 (25%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLG----------------------PEYL- 204
L+T F H D+ H++ NMI L+FFG I + P YL
Sbjct: 43 LVTYGFIHADLGHLIFNMITLFFFGRVIENVMAQLTGSVLTYPLFYLAALVVSILPSYLK 102
Query: 205 -------LKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLR 257
L L +GA+ +F AF+ + + + P+ VF +G +
Sbjct: 103 NQKNPNYLSLGASGAVSAVLF-----AFILLQPWTIILVLFIPAPAILYAVFYVGYSLWM 157
Query: 258 IIEGNSNISGSAHLGGAA 275
G I+ SAHL GAA
Sbjct: 158 DRRGGDRINHSAHLAGAA 175
>gi|336397802|ref|ZP_08578602.1| Peptidase S54, rhomboid domain [Prevotella multisaccharivorax DSM
17128]
gi|336067538|gb|EGN56172.1| Peptidase S54, rhomboid domain [Prevotella multisaccharivorax DSM
17128]
Length = 299
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 126 VVYGLIIANTAVFM-LWRIADPKFMANNFTISLDNFLSGRLHT--LITSAFSHIDVEHIV 182
V LII N F+ + +A + N L FL+ H L+T F H EHI+
Sbjct: 7 VTRNLIIINFLCFIGMLLLAQAGVVDLNNLFGLHFFLASDFHIFQLVTYMFMHGGWEHII 66
Query: 183 SNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
NM L+ FG + R GP+ + Y+ IG +
Sbjct: 67 LNMFMLWMFGAVMERVWGPKRFIIYYLFCGIGAGL 101
>gi|374316397|ref|YP_005062825.1| hypothetical protein [Sphaerochaeta pleomorpha str. Grapes]
gi|359352041|gb|AEV29815.1| putative membrane protein [Sphaerochaeta pleomorpha str. Grapes]
Length = 213
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 79/188 (42%), Gaps = 27/188 (14%)
Query: 124 SEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNF-LSGRLHTLITSAFSHIDVEHIV 182
+ + LII N VF+L P+ + + + +F L G + T F H HI
Sbjct: 18 TNITLKLIIINAVVFLLTTYIAPR--SAYYLAMIPSFVLHGYIWQFFTYMFVHGGFSHIF 75
Query: 183 SNMIGLYFFGMSIGRTLG-PEYLLKLYMAGAIGGSVFYLVYHA------FLAMSSKRQGM 235
NM+ L+ FG + + +G E+LL + G + G + +L Y A + S G+
Sbjct: 76 FNMLSLFIFGTMVEQRVGSKEFLLFYLLTGIVSGIISFLCYLAAGTNVILVGASGAIYGV 135
Query: 236 WVVDPSRTPALGVFLIGKDMLR---------IIEGNSNISGSA-------HLGGAAVAAL 279
++ P VF+ G +R IE +S + G+ HL G A L
Sbjct: 136 LLMFAVFYPYARVFVFGLIPIRAPVLVVLYAFIELSSQVFGAGGNVAHLTHLSGLLFAYL 195
Query: 280 AWARIRRR 287
+ RIR +
Sbjct: 196 -YCRIRMK 202
>gi|433448881|ref|ZP_20411746.1| small hydrophobic molecule transporter protein, putative [Weissella
ceti NC36]
gi|429539270|gb|ELA07307.1| small hydrophobic molecule transporter protein, putative [Weissella
ceti NC36]
Length = 236
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 20/90 (22%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHA--- 224
L+T+ F H + HI+ N + +YF G + TLG L +++ G +GGS+ + +
Sbjct: 62 LLTAGFIHASLMHILMNTVVIYFIGKILETTLGSIQLATIFILGVLGGSLLSITLGSLNV 121
Query: 225 -----------------FLAMSSKRQGMWV 237
+L + KR+G WV
Sbjct: 122 IYIGASSGAFAMVGAVIYLGLQEKRRGAWV 151
>gi|94971691|ref|YP_593739.1| rhomboid-like protein [Candidatus Koribacter versatilis Ellin345]
gi|94553741|gb|ABF43665.1| Rhomboid-like protein [Candidatus Koribacter versatilis Ellin345]
Length = 285
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 159 NFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
N L G ++ L+T +F H H+ NM+GL+ FG I G L Y +GG++
Sbjct: 56 NVLHGHVYELVTYSFLHAGGMHLFGNMLGLWMFGSQIEGDFGTRRFLSFYFWCVVGGAL 114
>gi|291455745|ref|ZP_06595135.1| peptidase, S54 family [Bifidobacterium breve DSM 20213 = JCM 1192]
gi|291382673|gb|EFE90191.1| peptidase, S54 family [Bifidobacterium breve DSM 20213 = JCM 1192]
Length = 246
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 24/127 (18%)
Query: 109 SFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFL--SGRL- 165
RY+W + G + + LI A TAV+++ + + + +L N+L G L
Sbjct: 8 EIRYQW-----ERGGPVMTWALIAACTAVWLV------EVLLGFLSPTLQNWLIYRGMLA 56
Query: 166 --------HTLITSAFSHI--DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGG 215
++TS F H + HI+ NMI LY G + R +G L LYM +GG
Sbjct: 57 PATMLAEPWAIVTSMFLHAPNSILHILFNMIALYSVGPVLERLIGHWRFLGLYMISGLGG 116
Query: 216 SVFYLVY 222
++ +V+
Sbjct: 117 ALGMMVW 123
>gi|270295352|ref|ZP_06201553.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270274599|gb|EFA20460.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 296
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 76/184 (41%), Gaps = 41/184 (22%)
Query: 130 LIIANTAVFMLWRIADPKFMANNFTI-----------SLDNFLSGRLHTLITSAFSHIDV 178
LI N AVF+L + + F N +I S+ F+ + +L+T F H
Sbjct: 21 LIYINVAVFILTTLTEVMFQLFNRSIAGVFEWLELPASVIRFIL-QPWSLLTYMFMHAGF 79
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH--------------- 223
HI+ NM+ LY+FG ++L +Y+ G I G + Y+ +
Sbjct: 80 MHILFNMLWLYWFGALFLSFFSAKHLRGVYILGGICGGLLYMAAYNIFPYFRPMTDYSFM 139
Query: 224 --------AFLAMSSKRQGMWVV-----DPSRTPALGVFLIGKDMLRIIEGNSNISGSAH 270
A +A +S R+ + + R L + +IG D+L I N+ AH
Sbjct: 140 LGASASVLAIVAATSYREPNYPIRLLLFGTIRLKYLALIVIGTDLLFITSSNAG-GHIAH 198
Query: 271 LGGA 274
LGGA
Sbjct: 199 LGGA 202
>gi|339639827|ref|ZP_08661271.1| peptidase, S54 family [Streptococcus sp. oral taxon 056 str. F0418]
gi|339453096|gb|EGP65711.1| peptidase, S54 family [Streptococcus sp. oral taxon 056 str. F0418]
Length = 227
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 170 TSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
++ F HI +EH V NM+ LYF G I G L LY+ + G+VF
Sbjct: 63 SAMFIHIGLEHFVVNMLTLYFLGRQIEAIFGSWKFLLLYLMSGVMGNVF 111
>gi|414167426|ref|ZP_11423654.1| hypothetical protein HMPREF9696_01509 [Afipia clevelandensis ATCC
49720]
gi|410889758|gb|EKS37559.1| hypothetical protein HMPREF9696_01509 [Afipia clevelandensis ATCC
49720]
Length = 239
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 161 LSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYL 220
+ + T +T AF H D+ HI NM+ + FG ++ R G + AI G+V +L
Sbjct: 50 VGAEIWTFLTYAFLHADITHIAFNMLWMLPFGSAVARRFGTVRFFAFFAVTAIAGAVAHL 109
Query: 221 VYH 223
+ H
Sbjct: 110 LTH 112
>gi|261402576|ref|YP_003246800.1| rhomboid family protein [Methanocaldococcus vulcanius M7]
gi|261369569|gb|ACX72318.1| Rhomboid family protein [Methanocaldococcus vulcanius M7]
Length = 222
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
LITS F H + H++ NM L+FFG + R +G + + +++ I G++ Y++Y
Sbjct: 56 LITSIFMHATITHLLLNMFVLFFFGTYLERLIGAKKYILVFLISGIVGNLAYILY 110
>gi|284028038|ref|YP_003377969.1| Rhomboid family protein [Kribbella flavida DSM 17836]
gi|283807331|gb|ADB29170.1| Rhomboid family protein [Kribbella flavida DSM 17836]
Length = 246
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 63/140 (45%), Gaps = 32/140 (22%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV-FYLVYHAF- 225
L TSAF+H+ + HI SN+ LY G + + LG + LY A+GGS+ +L+ +
Sbjct: 108 LFTSAFTHLQIFHIFSNLFMLYQVGPLLEQMLGRLRFVLLYFLSALGGSIAVWLLANPVS 167
Query: 226 ---------------LAMSSKRQGM---WVVDPSRTPALGVFLIGKDMLRIIEGNSNISG 267
L + S+ +GM W++ A+ FL NIS
Sbjct: 168 STLGASGAVLGLVGALLVISRARGMDVTWILAYVAITAVISFLF-----------PNISW 216
Query: 268 SAHLGG-AAVAALAWARIRR 286
HLGG A AA+AW +R
Sbjct: 217 QGHLGGFLAGAAIAWLFLRE 236
>gi|21242203|ref|NP_641785.1| hypothetical protein XAC1451 [Xanthomonas axonopodis pv. citri str.
306]
gi|21107623|gb|AAM36321.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
str. 306]
Length = 224
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 54/138 (39%), Gaps = 35/138 (25%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLG----------------------PEYL- 204
L+T F H D+ H++ NMI L+FFG I + P YL
Sbjct: 65 LVTYGFIHADLGHLIFNMITLFFFGRVIENVMAQLTGSVLTYPLFYLAALVVSILPSYLK 124
Query: 205 -------LKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLR 257
L L +GA+ +F AF+ + + + P+ VF +G +
Sbjct: 125 NQKNPNYLSLGASGAVSAVLF-----AFILLQPWTIILVLFIPAPAILYAVFYVGYSLWM 179
Query: 258 IIEGNSNISGSAHLGGAA 275
G I+ SAHL GAA
Sbjct: 180 DRRGGDRINHSAHLAGAA 197
>gi|319788527|ref|YP_004148002.1| rhomboid family protein [Pseudoxanthomonas suwonensis 11-1]
gi|317467039|gb|ADV28771.1| Rhomboid family protein [Pseudoxanthomonas suwonensis 11-1]
Length = 234
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAG 211
G + L T+ F H D H++ N++ L FG+ R +GP L L++AG
Sbjct: 69 DGSISRLFTALFLHADWAHLLGNLVFLLIFGLPAERAMGPWRFLLLFLAG 118
>gi|291438500|ref|ZP_06577890.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
gi|291341395|gb|EFE68351.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
Length = 296
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 134 NTAVFMLWRIADPKFMANNFTISL---------DNFLSGRLHTLITSAFSHIDVEHIVSN 184
N AVF+ +I P + + + I + + G + L TS F+H + HI N
Sbjct: 93 NLAVFVAVQI-RPSLLRDLYLIGVWPPAPFLPTEGVADGEWYRLFTSMFTHEAIWHIAFN 151
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVF 218
M+GL++ G + + LG L LY+ + GS
Sbjct: 152 MLGLWWLGGPLEQALGRARYLALYLISGLAGSAL 185
>gi|403220814|dbj|BAM38947.1| integral membrane protein [Theileria orientalis strain Shintoku]
Length = 418
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 129 GLIIANTAVFMLWRIAD-------PKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHI 181
I +VF LW++A+ FM+N+F S + + R HTLITSA SH H
Sbjct: 160 AFIAVCGSVFALWKLAENTVSQKFTDFMSNHFVASYEAIKAKRYHTLITSAISHTSFLHF 219
Query: 182 VSNMI 186
N +
Sbjct: 220 GLNCM 224
>gi|116621336|ref|YP_823492.1| rhomboid family protein [Candidatus Solibacter usitatus Ellin6076]
gi|116224498|gb|ABJ83207.1| Rhomboid family protein [Candidatus Solibacter usitatus Ellin6076]
Length = 246
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 70/177 (39%), Gaps = 32/177 (18%)
Query: 130 LIIANTAVFMLWRI------ADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVS 183
L+I NT VF++ + D + +A + +F + L+T F H + H++
Sbjct: 24 LLIVNTVVFLITSLFARQFGDDFRLLALAPVAVVQHF---AIWQLVTYLFLHGGITHLLF 80
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL------------AMSSK 231
NM+ L+ FG + G LK Y IG V + +A + A+
Sbjct: 81 NMLALWMFGTPLESDWGTRQFLKYYFICGIGAGVCDVAMNAMMGNWVTSTIGASGAIYGL 140
Query: 232 RQGMWVVDPSRTPALGVF--LIGKDMLRI---------IEGNSNISGSAHLGGAAVA 277
V P +T +G + K M+ I I N+ IS AHLGG V
Sbjct: 141 LLAYGVCYPDQTVLMGFLFPIKAKYMVMIYAAIELYLSIGVNNGISNIAHLGGMVVG 197
>gi|456864209|gb|EMF82623.1| peptidase, S54 family [Leptospira weilii serovar Topaz str. LT2116]
Length = 197
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSV 217
+TL+TS F H D H++ NMI Y FG ++ T+GP L Y+ + SV
Sbjct: 41 YTLLTSGFIHADWMHLIFNMISFYSFGKNLEITVGPIKFLLFYLGTILITSV 92
>gi|289662960|ref|ZP_06484541.1| hypothetical protein XcampvN_07693 [Xanthomonas campestris pv.
vasculorum NCPPB 702]
gi|289670187|ref|ZP_06491262.1| hypothetical protein XcampmN_17269 [Xanthomonas campestris pv.
musacearum NCPPB 4381]
Length = 202
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 54/138 (39%), Gaps = 35/138 (25%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLG----------------------PEYL- 204
L+T F H D+ H+V NM+ L+FFG I + P YL
Sbjct: 43 LVTYGFIHADLGHLVFNMVTLFFFGRVIENVMAELTGSVLTYPLFYLAALVVSILPSYLK 102
Query: 205 -------LKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLR 257
L L +GA+ +F AF+ + + + P+ VF +G +
Sbjct: 103 NQKNPNYLSLGASGAVSAVLF-----AFILLQPWTIILVLFIPAPAILYAVFYVGYSLWM 157
Query: 258 IIEGNSNISGSAHLGGAA 275
G I+ SAHL GAA
Sbjct: 158 DRRGGDRINHSAHLAGAA 175
>gi|229816943|ref|ZP_04447225.1| hypothetical protein BIFANG_02194 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
gi|229785688|gb|EEP21802.1| hypothetical protein BIFANG_02194 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
Length = 239
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 11/120 (9%)
Query: 109 SFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIA----DPKFMA-NNFTISLDNFLSG 163
RY W + G V +I+A AV+++ IA P F A N+ + +
Sbjct: 10 EIRYAWAA-----GEPVVTTAIIVACVAVWLVEIIARYLMPPVFAAIVNWGMVAPVLMVQ 64
Query: 164 RLHTLITSAFSHI-DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
R T +TS F H V HI+ NM+ L+ G + R LG L Y+ GG+ +V+
Sbjct: 65 RPWTWLTSMFLHAPSVLHILFNMLALWSVGPMLERMLGHWRFLAFYLISGFGGAAGLMVW 124
>gi|419707143|ref|ZP_14234640.1| Conserved hypothetical, predicted membrane protein (TMS6)
[Streptococcus salivarius PS4]
gi|383283103|gb|EIC81070.1| Conserved hypothetical, predicted membrane protein (TMS6)
[Streptococcus salivarius PS4]
Length = 224
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
L+T F HI +EH + NM+ LYF G + G L LY+ + G+ F L++
Sbjct: 61 LVTPIFVHIGLEHFLFNMLTLYFIGKMAEQIFGTLRFLGLYLLAGVMGNAFTLIF 115
>gi|326674503|ref|XP_001331983.4| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like [Danio rerio]
Length = 362
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 126 VVYGLIIANTAVFMLWRIADPK-FMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
V G+I N VF WR+ + M FT + + ++ S FSH + H+ +N
Sbjct: 150 CVSGIIAVNAFVFCCWRVPSLQHLMVKYFTSNPSS--KALCWPMLLSTFSHYSLFHLSAN 207
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAI 213
M L+ F SI +G E + LY++ +
Sbjct: 208 MYVLWSFSSSIINMMGKEQFMALYLSTGV 236
>gi|319955282|ref|YP_004166549.1| peptidase s54, rhomboid domain protein [Cellulophaga algicola DSM
14237]
gi|319423942|gb|ADV51051.1| Peptidase S54, rhomboid domain protein [Cellulophaga algicola DSM
14237]
Length = 216
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 57/137 (41%), Gaps = 26/137 (18%)
Query: 162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLV 221
SG+ + TS F H+D H+ NM LYFF + LG + +Y + GS+ +V
Sbjct: 41 SGQKDRMFTSGFLHVDFSHLFFNMFTLYFFAPVVIEWLGTVKFVIIYSISLLAGSLLSMV 100
Query: 222 YH---------------------AFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIE 260
+H A L + + G+ + P PA VF IG + I
Sbjct: 101 FHKNEDYYTAVGASGAVTGILYAAILLQPTMQLGIMFI-PIPVPAY-VFGIGYLLYSIYG 158
Query: 261 GNS---NISGSAHLGGA 274
S NI +AH GGA
Sbjct: 159 MKSRLGNIGHTAHFGGA 175
>gi|256389834|ref|YP_003111398.1| rhomboid family protein [Catenulispora acidiphila DSM 44928]
gi|256356060|gb|ACU69557.1| Rhomboid family protein [Catenulispora acidiphila DSM 44928]
Length = 359
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 163 GRLHTLITSAFSHI-------DVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGG 215
G+ + +ITSAF HI HI+ NM+ L+ FG+ + + +G L Y+ A+GG
Sbjct: 134 GQWYRMITSAFVHILPNQPPLGPMHILFNMLSLWMFGVVVEQQIGRVRYLAAYLLSAVGG 193
Query: 216 SVF 218
SVF
Sbjct: 194 SVF 196
>gi|336435773|ref|ZP_08615487.1| hypothetical protein HMPREF0988_01072 [Lachnospiraceae bacterium
1_4_56FAA]
gi|336000268|gb|EGN30420.1| hypothetical protein HMPREF0988_01072 [Lachnospiraceae bacterium
1_4_56FAA]
Length = 207
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 12/123 (9%)
Query: 129 GLIIANTAVFM----LWRIADPKFMANNFTISLDNFLSGRL-HTLITSAFSHIDVEHIVS 183
G II N +F+ + + D F+ + + L G+ + L+TS F H ++H+++
Sbjct: 12 GFIIVNIGIFLGIMLIGKDGDTMFLLEHGAMYAPYVLEGKEDYRLVTSMFLHFGMQHLLN 71
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRT 243
NM+ L G ++ G + +YM IGG++ L FL ++ G++VV +
Sbjct: 72 NMVMLGALGWNLEAVTGKIRFILIYMFSGIGGNLLSL----FL---NRNSGVYVVSAGAS 124
Query: 244 PAL 246
A+
Sbjct: 125 GAV 127
>gi|84623888|ref|YP_451260.1| hypothetical protein XOO_2231 [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|84367828|dbj|BAE68986.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
311018]
Length = 202
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 54/138 (39%), Gaps = 35/138 (25%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLG----------------------PEYL- 204
L+T F H D+ H+V NM+ L+FFG I + P YL
Sbjct: 43 LVTYGFIHADLGHLVFNMVTLFFFGRVIESVMAQLTGSVLTYPLFYLAALAVSILPSYLK 102
Query: 205 -------LKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLR 257
L L +GA+ +F AF+ + + + P+ VF +G +
Sbjct: 103 NQKNPNYLSLGASGAVSAVLF-----AFILLQPWTIILVLFIPAPAIIYAVFYVGYSLWM 157
Query: 258 IIEGNSNISGSAHLGGAA 275
G I+ SAHL GAA
Sbjct: 158 DRRGGDRINHSAHLAGAA 175
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.328 0.138 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,512,873,549
Number of Sequences: 23463169
Number of extensions: 182076465
Number of successful extensions: 584170
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1681
Number of HSP's successfully gapped in prelim test: 893
Number of HSP's that attempted gapping in prelim test: 581391
Number of HSP's gapped (non-prelim): 2998
length of query: 289
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 148
effective length of database: 9,050,888,538
effective search space: 1339531503624
effective search space used: 1339531503624
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 76 (33.9 bits)