BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023003
(289 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P53259|PCP1_YEAST Rhomboid protein 1, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PCP1 PE=1 SV=1
Length = 346
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
+VY L+ N AVF LW++ + + ++++ ++ ++I SAFSH + H+ N
Sbjct: 144 NLVYALLGINVAVFGLWQLPKCWRFLQKYMLLQKDYVTSKI-SIIGSAFSHQEFWHLGMN 202
Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
M+ L+ FG S+ LG LYM AI GS+F L Y
Sbjct: 203 MLALWSFGTSLATMLGASNFFSLYMNSAIAGSLFSLWY 240
>sp|Q58EK4|PARL_DANRE Presenilins-associated rhomboid-like protein, mitochondrial
OS=Danio rerio GN=parl PE=2 SV=1
Length = 383
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 125 EVVYGLIIANTAVFMLWRI-ADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVS 183
+ V G+I NT V WR+ A +F+ FT + + R ++ S+FSH V H+V
Sbjct: 168 KTVTGIIALNTVVLCCWRVPAMQRFLVKYFTSNPAS--KTRCLPMVLSSFSHYSVIHMVV 225
Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAI 213
NM L+ F SI LG E L LY++G +
Sbjct: 226 NMYVLWTFSSSIVSLLGREQFLALYLSGGV 255
>sp|Q5R5H4|PARL_PONAB Presenilins-associated rhomboid-like protein, mitochondrial
OS=Pongo abelii GN=PARL PE=2 SV=1
Length = 379
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 66/138 (47%), Gaps = 9/138 (6%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 129 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVLVFCLWRVPS 187
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 188 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 244
Query: 204 LLKLYM-AGAIGGSVFYL 220
+ +Y+ AG I V Y+
Sbjct: 245 FMAVYLSAGVISNFVSYV 262
>sp|Q9H300|PARL_HUMAN Presenilins-associated rhomboid-like protein, mitochondrial OS=Homo
sapiens GN=PARL PE=1 SV=2
Length = 379
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 66/138 (47%), Gaps = 9/138 (6%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 129 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVLVFCLWRVPS 187
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 188 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 244
Query: 204 LLKLYM-AGAIGGSVFYL 220
+ +Y+ AG I V Y+
Sbjct: 245 FMAVYLSAGVISNFVSYV 262
>sp|Q2KHV4|PARL_BOVIN Presenilins-associated rhomboid-like protein, mitochondrial OS=Bos
taurus GN=PARL PE=2 SV=1
Length = 377
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 9/139 (6%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ FR W + V G+I AN VF LWR+
Sbjct: 127 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVFVFCLWRVPS 185
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 186 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 242
Query: 204 LLKLYM-AGAIGGSVFYLV 221
+ +Y+ AG I V Y+
Sbjct: 243 FMAVYLSAGVISTFVSYVC 261
>sp|Q5XJY4|PARL_MOUSE Presenilins-associated rhomboid-like protein, mitochondrial OS=Mus
musculus GN=Parl PE=1 SV=1
Length = 377
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 66/139 (47%), Gaps = 9/139 (6%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ + R W + V G+I AN VF LWR+
Sbjct: 127 QSYFDGIKADWLDSIRPQKE-GNLRKEINKWWNSLSDGQRTVTGIIAANALVFCLWRVPS 185
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 186 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 242
Query: 204 LLKLYM-AGAIGGSVFYLV 221
+ +Y+ AG I V Y+
Sbjct: 243 FVAVYLSAGVISNFVSYVC 261
>sp|Q3B8P0|PARL_RAT Presenilins-associated rhomboid-like protein, mitochondrial
OS=Rattus norvegicus GN=Parl PE=2 SV=1
Length = 377
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 66/139 (47%), Gaps = 9/139 (6%)
Query: 88 KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
+S+FDG K + + P++ + R W + V G+I AN VF LWR+
Sbjct: 127 QSYFDGIKADWLDSIRPQKE-GNLRKEINKWWNSLSDGQRTVTGIIAANALVFCLWRVPS 185
Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
+ M FT N S L + ++ S FSH + H+ +NM L+ F SI LG E
Sbjct: 186 LHRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSTSIVNILGQEQ 242
Query: 204 LLKLYM-AGAIGGSVFYLV 221
+ +Y+ AG I V Y+
Sbjct: 243 FVAVYLSAGVISNFVSYVC 261
>sp|O14364|YOHB_SCHPO Uncharacterized protein C13E7.11 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC13E7.11 PE=4 SV=1
Length = 298
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 118 LRQYGSSEVVYGLIIANTAVFMLWRIADPKF-MANNF--TISLDNFLSGRLHTLITSAFS 174
+ Q S +V +I N VF LWR P+F N F ++ N + + ++I SAFS
Sbjct: 71 IPQTSSRSLVLSIIGINVGVFALWR--APRFSHLNRFLQKYAVMNPIFINMPSMIVSAFS 128
Query: 175 HIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
H H++ NM+ Y F +I G + Y++ + +V L++H
Sbjct: 129 HQSGWHLLFNMVAFYSFAPAIVDVFGNNQFVAFYISSILFSNVASLLHH 177
>sp|Q9P7D8|YOFA_SCHPO Uncharacterized rhomboid protein P4H10.10, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBP4H10.10 PE=3 SV=1
Length = 392
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Query: 130 LIIANTAVFMLWRIADP-----------KFMANNFTISLDNFLSGRLHTLITSAFSHIDV 178
+ + N VF W +A +FM + SL N GR TL+ S FSH ++
Sbjct: 123 VCLVNGVVFWHWDLARDEAIRLHDFKRFRFMMTHAQASLFNLYEGRWWTLVVSIFSHQNL 182
Query: 179 EHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS 216
H++ N + +Y F + G L +Y+ + G+
Sbjct: 183 AHLLVNCVAIYSFLSIVVYKFGVWKALSVYLGAGVFGN 220
>sp|Q2PP52|RHBL6_TOXGO Rhomboid-like protease 6 OS=Toxoplasma gondii GN=ROM6 PE=2 SV=1
Length = 531
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 121 YGSSEVVYGLIIANTAVFMLWRIADP-------KFMANNFTISLDNFLSGRLHTLITSAF 173
Y +++ ++ N AVF WR+A F+ +F + +N R++T +TS+
Sbjct: 302 YEHRKLLGAFLMTNAAVFTGWRLAATAGNGTWWTFLMRHFVLCRENLARARIYTFVTSSL 361
Query: 174 SHIDVEHIVSNM 185
SH H++ N+
Sbjct: 362 SHKSTGHLIFNL 373
>sp|A8AQX4|GLPG_CITK8 Rhomboid protease GlpG OS=Citrobacter koseri (strain ATCC BAA-895 /
CDC 4225-83 / SGSC4696) GN=glpG PE=3 SV=1
Length = 276
Score = 35.0 bits (79), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 99/253 (39%), Gaps = 47/253 (18%)
Query: 49 HPTFSWRSQQSLSLKTHA----FLFNPLLARRFFTSLLSSQLRKSFFDGKVLFFRAQFPE 104
H + W + +S + + A FL NP R S S G L +R +FP
Sbjct: 33 HQSDVWLADESQAERVRAELARFLENPADPRYLAASWQSGH------TGSGLHYR-RFP- 84
Query: 105 RSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGR 164
A+ R R + V + ++IA VF++ I + + D L
Sbjct: 85 -FIATLRER---------AGPVTWLIMIACILVFVVMSIVGAQSVMVWLAWPFDPSLKFE 134
Query: 165 LHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMA-------------- 210
T AF H + HI+ N++ ++ G ++ + LG L+ + +
Sbjct: 135 FWRYFTHAFMHFSLMHILFNLLWWWYIGGAVEKRLGSGKLIVITVISALLSGYVQQKFSG 194
Query: 211 ---GAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEGNSNISG 267
G + G V+ L+ +A+L +R DP L LI ++ I+ G ++ G
Sbjct: 195 PWFGGLSGVVYALMGYAWL--RGER------DPQSGIYLQRGLIAFALIWIVAGWFDVFG 246
Query: 268 SAHLGGAAVAALA 280
+ GA +A LA
Sbjct: 247 MSMANGAHIAGLA 259
>sp|P54493|GLUP_BACSU Rhomboid protease GluP OS=Bacillus subtilis (strain 168) GN=gluP
PE=1 SV=2
Length = 507
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 168 LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
L+T HI + H+ N + L+ G ++ R G L +Y+A I GS+ V+ +
Sbjct: 225 LLTPIVLHIGIAHLAFNTLALWSVGTAVERMYGSGRFLLIYLAAGITGSIASFVFSPY 282
>sp|Q9T6H8|CCF1_ARATH Putative cytochrome c biogenesis ccmF N-terminal-like mitochondrial
protein OS=Arabidopsis thaliana GN=CCMFN1 PE=1 SV=3
Length = 382
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 55 RSQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSFFDGKVLFFRAQFPERSFASFRYRW 114
R +Q LK L+ P + R S L S+ R FDG LF+ +PER + W
Sbjct: 136 RYEQESGLKNQ--LYTPFVLRTLVDSELCSR-RNRTFDGPALFYAPLYPERKIKNPLDAW 192
Query: 115 R 115
R
Sbjct: 193 R 193
>sp|Q02DF6|GLMU_PSEAB Bifunctional protein GlmU OS=Pseudomonas aeruginosa (strain
UCBPP-PA14) GN=glmU PE=3 SV=1
Length = 454
Score = 32.3 bits (72), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 222 YHAFLAMSSKRQGMWVVDPSRTPALGVFLIGKDML----RIIEGNSNISGSAHLG 272
Y A RQG+ ++DP R G +G+D+L ++EG I H+G
Sbjct: 236 YQRLRAEELMRQGVTLLDPQRLDVRGEISVGRDVLIDVNVVLEGRVVIEDDVHIG 290
>sp|B7V789|GLMU_PSEA8 Bifunctional protein GlmU OS=Pseudomonas aeruginosa (strain LESB58)
GN=glmU PE=3 SV=1
Length = 454
Score = 32.3 bits (72), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 222 YHAFLAMSSKRQGMWVVDPSRTPALGVFLIGKDML----RIIEGNSNISGSAHLG 272
Y A RQG+ ++DP R G +G+D+L ++EG I H+G
Sbjct: 236 YQRLRAEELMRQGVTLLDPQRLDVRGEISVGRDVLIDVNVVLEGRVVIEDDVHIG 290
>sp|P61644|SIA8C_PANTR Sia-alpha-2,3-Gal-beta-1,4-GlcNAc-R:alpha 2,8-sialyltransferase
OS=Pan troglodytes GN=ST8SIA3 PE=2 SV=1
Length = 380
Score = 31.2 bits (69), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 48 FHPTFSWRSQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSFF------DGKVLFFRAQ 101
F PT ++ Q+ + KT+ FNP + +++ +LL+ Q R +FF DG +L+ A
Sbjct: 191 FAPTEAF--QRDVGRKTNLTTFNPSILEKYYNNLLTIQDRNNFFLSLKKLDGAILWIPAF 248
Query: 102 F 102
F
Sbjct: 249 F 249
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.138 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,910,909
Number of Sequences: 539616
Number of extensions: 4077709
Number of successful extensions: 12663
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 12639
Number of HSP's gapped (non-prelim): 30
length of query: 289
length of database: 191,569,459
effective HSP length: 116
effective length of query: 173
effective length of database: 128,974,003
effective search space: 22312502519
effective search space used: 22312502519
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 61 (28.1 bits)