Query 023003
Match_columns 289
No_of_seqs 206 out of 1542
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 14:42:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023003.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023003hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xov_A Rhomboid protease GLPG; 99.9 2E-27 6.9E-32 205.7 13.8 160 123-286 3-180 (181)
2 2nr9_A Protein GLPG homolog; i 99.9 1.9E-27 6.7E-32 208.3 8.9 161 123-286 8-185 (196)
3 2kxa_A Haemagglutinin HA2 chai 17.7 61 0.0021 19.1 1.6 9 271-279 2-10 (30)
4 3vr8_C Cytochrome B-large subu 8.9 3.1E+02 0.011 23.0 4.0 20 166-185 122-143 (188)
5 3kly_A Putative formate transp 7.7 4E+02 0.014 23.5 4.5 19 170-188 198-216 (280)
6 3kcu_A Probable formate transp 7.0 4.6E+02 0.016 23.2 4.5 19 170-188 199-217 (285)
7 2l2t_A Receptor tyrosine-prote 5.6 4.5E+02 0.015 16.8 2.6 7 281-287 31-37 (44)
8 1l1y_A Cellobiohydrolase; alph 3.6 2.4E+02 0.0084 28.0 0.2 24 17-47 51-74 (678)
9 3a1g_B Polymerase basic protei 3.4 1.1E+02 0.0039 19.2 -1.5 21 1-21 4-27 (40)
10 2kpj_A SOS-response transcript 3.4 6.5E+02 0.022 17.2 2.4 49 2-50 46-94 (94)
No 1
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=99.95 E-value=2e-27 Score=205.69 Aligned_cols=160 Identities=18% Similarity=0.235 Sum_probs=130.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHhcChhHHHhcccccccccccCCcceeeecccccCChHHHHHHHHHHHHHHHHHhhhcChh
Q 023003 123 SSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPE 202 (289)
Q Consensus 123 ~~~vt~~iI~inv~Vfll~~~~~~~~~~~~f~l~p~~i~~g~~wrllTs~F~H~~~~HLl~Nm~~L~~~G~~le~~~G~~ 202 (289)
.+++|..++++|+++|+++...+.+.+.+++.++|+.+.++|+||++|++|+|.|+.|+++||+.++.+|..+|+.+|++
T Consensus 3 ~~pvt~~li~~~v~vf~~~~~~~~~~~~~~~~~~p~~~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~G~~ 82 (181)
T 2xov_A 3 AGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSG 82 (181)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSGGGTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCcHHHHHhhcCChhhccCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhChH
Confidence 45799999999999999998876555567778888777889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccceeeeeeeEee--e---------cccc-----hhH--HHHHHHHHHHHHhccCCCc
Q 023003 203 YLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWV--V---------DPSR-----TPA--LGVFLIGKDMLRIIEGNSN 264 (289)
Q Consensus 203 ~fl~lyl~~gi~g~l~~~l~~~~~~~~~GaSGai~--l---------~p~~-----~p~--l~~~~l~~~l~~~~~~~~~ 264 (289)
+++.+|+.+++.+++.+++..+. .++||||+++ + .|.. .+. +..+++..++... . .++
T Consensus 83 ~fl~~yl~~~i~~~l~~~~~~~~--~~vGaSGai~gl~g~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~-~-~~~ 158 (181)
T 2xov_A 83 KLIVITLISALLSGYVQQKFSGP--WFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDL-F-GMS 158 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCS--CCCCSHHHHHHHHHHHHHHHHHCGGGSCCCCHHHHHHHHHHHHHHHTTS-S-CCS
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC--CceeHHHHHHHHHHHHHHHHhhCcCceeeeHHHHHHHHHHHHHHHHHHh-c-ccc
Confidence 99999999999999999887654 3789999885 1 1211 121 2223333333321 1 368
Q ss_pred hhHHHHHHHHHHHHHHHHHHhc
Q 023003 265 ISGSAHLGGAAVAALAWARIRR 286 (289)
Q Consensus 265 vs~~AHLgGal~G~l~~~~lrk 286 (289)
+|+.||++|+++|+++...++|
T Consensus 159 v~~~aHlgG~l~G~l~~~~~~~ 180 (181)
T 2xov_A 159 MANGAHIAGLAVGLAMAFVDSL 180 (181)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999988876
No 2
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=99.94 E-value=1.9e-27 Score=208.33 Aligned_cols=161 Identities=14% Similarity=0.109 Sum_probs=128.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHhcChhHHHhcccccccccccCCcceeeecccccCChHHHHHHHHHHHHHHHHHhhhcChh
Q 023003 123 SSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPE 202 (289)
Q Consensus 123 ~~~vt~~iI~inv~Vfll~~~~~~~~~~~~f~l~p~~i~~g~~wrllTs~F~H~~~~HLl~Nm~~L~~~G~~le~~~G~~ 202 (289)
.+++|..++++|+++|+++...+...+.+++.++|+.+.++|+||++|++|+|.|+.|+++||+.++.+|..+|+.+|++
T Consensus 8 ~~pvt~~li~~~v~vfll~~~~~~~~~~~~~~~~p~~~~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G~~lE~~~G~~ 87 (196)
T 2nr9_A 8 QGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSV 87 (196)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCHhhcccCCcHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHChH
Confidence 45799999999999999998876555567778888877889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccceeeeeeeEee--e---------cccc--h--hH--HHHHHHHHHHHHhccCCCch
Q 023003 203 YLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWV--V---------DPSR--T--PA--LGVFLIGKDMLRIIEGNSNI 265 (289)
Q Consensus 203 ~fl~lyl~~gi~g~l~~~l~~~~~~~~~GaSGai~--l---------~p~~--~--p~--l~~~~l~~~l~~~~~~~~~v 265 (289)
+++.+|+.+++.+++++++..+. .++||||+++ + .+.. . +. +..+++.+++.... ..+++
T Consensus 88 ~~l~~yl~~~~~~~l~~~~~~~~--~~vGaSGai~gl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v 164 (196)
T 2nr9_A 88 KLLMLYVVASAITGYVQNYVSGP--AFFGLSGVVYAVLGYVFIRDKLNHHLFDLPEGFFTMLLVGIALGFISPL-FGVEM 164 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCS--CCCCSHHHHHHHHHHHHHHHHSSTTSCCCCCSSTTTTTTTTTHHHHSCS-SCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC--CeeeHHHHHHHHHHHHHHHHHhcchhhcchHHHHHHHHHHHHHHHHHhc-cCCCc
Confidence 99999999999999999887654 3789999886 1 1111 1 11 12222334443221 24589
Q ss_pred hHHHHHHHHHHHHHHHHHHhc
Q 023003 266 SGSAHLGGAAVAALAWARIRR 286 (289)
Q Consensus 266 s~~AHLgGal~G~l~~~~lrk 286 (289)
|+.||+||+++|++++..+++
T Consensus 165 ~~~aHlgG~l~G~l~~~~~~~ 185 (196)
T 2nr9_A 165 GNAAHISGLIVGLIWGFIDSK 185 (196)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998765543
No 3
>2kxa_A Haemagglutinin HA2 chain peptide; fusion peptide, viral protein, immune system; NMR {Influenza a virus}
Probab=17.67 E-value=61 Score=19.10 Aligned_cols=9 Identities=33% Similarity=0.301 Sum_probs=7.1
Q ss_pred HHHHHHHHH
Q 023003 271 LGGAAVAAL 279 (289)
Q Consensus 271 LgGal~G~l 279 (289)
|.|+++|++
T Consensus 2 lFGAIAGfi 10 (30)
T 2kxa_A 2 LFGAIAGFI 10 (30)
T ss_dssp HHHHHHHHH
T ss_pred cchhhhhhh
Confidence 578888887
No 4
>3vr8_C Cytochrome B-large subunit; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_C*
Probab=8.93 E-value=3.1e+02 Score=22.98 Aligned_cols=20 Identities=15% Similarity=0.080 Sum_probs=13.5
Q ss_pred ceeeeccccc--CChHHHHHHH
Q 023003 166 HTLITSAFSH--IDVEHIVSNM 185 (289)
Q Consensus 166 wrllTs~F~H--~~~~HLl~Nm 185 (289)
|-+....+.| .|+=|++.++
T Consensus 122 ~~l~~a~~yH~~nGIRHLiwD~ 143 (188)
T 3vr8_C 122 FIIAFPIAFHTLNGIRFIGFDM 143 (188)
T ss_pred HHHHHHHHHHHHhhHHHHHHHh
Confidence 3444556666 5899998875
No 5
>3kly_A Putative formate transporter 1; membrane protein, channel, structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Vibrio cholerae} PDB: 3klz_A*
Probab=7.73 E-value=4e+02 Score=23.51 Aligned_cols=19 Identities=26% Similarity=0.478 Sum_probs=15.8
Q ss_pred ecccccCChHHHHHHHHHH
Q 023003 170 TSAFSHIDVEHIVSNMIGL 188 (289)
Q Consensus 170 Ts~F~H~~~~HLl~Nm~~L 188 (289)
+..|+=.++.|.+.||+.+
T Consensus 198 i~~Fv~~GfEH~VANm~~i 216 (280)
T 3kly_A 198 VAMFVSSGFEHCIANMFQV 216 (280)
T ss_dssp HHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHccchHHHhhHHHH
Confidence 4677888999999999855
No 6
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A
Probab=6.95 E-value=4.6e+02 Score=23.18 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=16.4
Q ss_pred ecccccCChHHHHHHHHHH
Q 023003 170 TSAFSHIDVEHIVSNMIGL 188 (289)
Q Consensus 170 Ts~F~H~~~~HLl~Nm~~L 188 (289)
+..|+=.++.|.+.||+.+
T Consensus 199 i~~Fv~~GfEH~VANm~~i 217 (285)
T 3kcu_A 199 VAMFVASGFEHSIANMFMI 217 (285)
T ss_dssp HHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHcCcchhhhhHHHH
Confidence 5678889999999999865
No 7
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=5.57 E-value=4.5e+02 Score=16.78 Aligned_cols=7 Identities=29% Similarity=0.472 Sum_probs=3.4
Q ss_pred HHHHhcC
Q 023003 281 WARIRRR 287 (289)
Q Consensus 281 ~~~lrkg 287 (289)
+.++||.
T Consensus 31 ~~~~RRR 37 (44)
T 2l2t_A 31 AVYVRRK 37 (44)
T ss_dssp HHHHHTT
T ss_pred HHHhhhh
Confidence 4455554
No 8
>1l1y_A Cellobiohydrolase; alpha/alpha barrel; HET: BGC; 2.40A {Clostridium thermocellum} SCOP: a.102.1.2 PDB: 1l2a_A*
Probab=3.59 E-value=2.4e+02 Score=28.00 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=16.7
Q ss_pred ccCCCcccccCCccccCCCCccCCCCCCCCC
Q 023003 17 LKNPTNFTFSKPFTCHPNVQKRPLSSFSKHP 47 (289)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (289)
.+||.|+||||| +-.|--|+|+--
T Consensus 51 I~dp~nGYFS~~-------eGiPYHSvETLi 74 (678)
T 1l1y_A 51 IKDPKNGYFSPD-------EGIPYHSIETLI 74 (678)
T ss_dssp HHCGGGCSBCTT-------TCCBCSBSCSCC
T ss_pred ccCCCCCcccCC-------CCCcccceeeee
Confidence 389999999954 235666777633
No 9
>3a1g_B Polymerase basic protein 2; influenza virus, RNA polymerase, nucleotide-binding, nucleotidyltransferase, nucleus, RNA replication; 1.70A {Influenza a virus} PDB: 2ztt_B
Probab=3.38 E-value=1.1e+02 Score=19.19 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=13.3
Q ss_pred Ccccchhhhhhhccc---cccCCC
Q 023003 1 MQRLLSLKQLASKSN---FLKNPT 21 (289)
Q Consensus 1 ~~~~~~~~~~~~~~~---~~~~~~ 21 (289)
|.|.-.||+|-+.++ +++++|
T Consensus 4 ~~~ikelk~L~~d~~a~~ilt~~T 27 (40)
T 3a1g_B 4 MERIKELRNLMSQSRTREILTKTT 27 (40)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHCB
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 456667777776665 566554
No 10
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=3.35 E-value=6.5e+02 Score=17.21 Aligned_cols=49 Identities=6% Similarity=0.045 Sum_probs=0.0
Q ss_pred cccchhhhhhhccccccCCCcccccCCccccCCCCccCCCCCCCCCCCC
Q 023003 2 QRLLSLKQLASKSNFLKNPTNFTFSKPFTCHPNVQKRPLSSFSKHPFHP 50 (289)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (289)
++..+++.+..+.+.+.-+.+.++...-.-.+.....+....+-+++||
T Consensus 46 ~~~p~~~~l~~ia~~l~v~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 94 (94)
T 2kpj_A 46 IAIPRMGKVQALADYFNINKSDLIEDKKLNIDTVPIESGYTLEHHHHHH 94 (94)
T ss_dssp SCCCCHHHHHHHHHHHTCCTHHHHSCSCCCCCCCCCSSSCCCCCCCCCC
T ss_pred CCCCCHHHHHHHHHHHCcCHHHHhcCCCccccccccccccccccccccC
Done!