Query 023005
Match_columns 289
No_of_seqs 162 out of 538
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 14:44:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023005.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023005hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jun_A Midline-1; B-BOX, TRIM, 98.5 6.2E-08 2.1E-12 75.3 3.4 84 2-91 3-100 (101)
2 2jun_A Midline-1; B-BOX, TRIM, 94.4 0.012 4E-07 45.2 1.2 43 46-88 4-49 (101)
3 2d8u_A Ubiquitin ligase TRIM63 94.1 0.022 7.5E-07 40.4 2.2 46 40-91 3-49 (64)
4 2yvr_A Transcription intermedi 94.0 0.021 7.1E-07 38.8 1.7 44 42-91 3-46 (50)
5 3ddt_A E3 ubiquitin-protein li 91.4 0.076 2.6E-06 35.8 1.6 42 44-91 5-47 (48)
6 2did_A Tripartite motif protei 91.3 0.097 3.3E-06 35.9 2.1 41 44-91 7-48 (53)
7 2ffw_A Midline-1; B-BOX, ring 90.4 0.082 2.8E-06 39.7 1.1 44 45-88 30-76 (78)
8 1fre_A Nuclear factor XNF7; zi 89.9 0.22 7.6E-06 32.3 2.9 27 47-74 5-31 (42)
9 2dja_A Midline-2; tripartite m 88.2 0.19 6.7E-06 37.3 1.8 44 42-91 15-59 (84)
10 2yrg_A Tripartite motif-contai 86.1 0.35 1.2E-05 34.2 2.0 41 44-91 13-54 (59)
11 2ffw_A Midline-1; B-BOX, ring 84.4 0.38 1.3E-05 36.0 1.7 43 2-44 30-75 (78)
12 2csv_A Tripartite motif protei 81.0 0.48 1.6E-05 34.3 1.0 40 45-91 18-57 (72)
13 2egm_A Tripartite motif-contai 72.9 0.61 2.1E-05 32.7 -0.4 29 45-74 18-46 (57)
14 2fc7_A ZZZ3 protein; structure 67.8 8.3 0.00029 29.2 5.0 51 41-92 18-75 (82)
15 2d8v_A Zinc finger FYVE domain 65.2 3 0.0001 31.1 1.9 46 43-90 6-52 (67)
16 1fre_A Nuclear factor XNF7; zi 56.8 5.4 0.00019 25.5 1.9 32 3-35 4-36 (42)
17 2did_A Tripartite motif protei 55.9 7.3 0.00025 26.2 2.5 31 3-34 9-40 (53)
18 2e5r_A Dystrobrevin alpha; ZZ 51.7 11 0.00036 27.2 2.9 48 41-90 9-60 (63)
19 2yqq_A Zinc finger HIT domain- 48.6 11 0.00036 27.0 2.4 27 44-71 11-38 (56)
20 2yrg_A Tripartite motif-contai 47.8 12 0.00041 26.0 2.6 31 3-34 15-46 (59)
21 2lri_C Autoimmune regulator; Z 46.9 13 0.00043 27.0 2.7 43 3-53 13-58 (66)
22 2dja_A Midline-2; tripartite m 43.9 19 0.00064 26.2 3.3 43 4-52 20-63 (84)
23 2d8u_A Ubiquitin ligase TRIM63 42.0 16 0.00056 25.1 2.6 45 3-53 9-54 (64)
24 2yvr_A Transcription intermedi 40.8 15 0.00052 24.2 2.1 32 3-34 7-38 (50)
25 1z60_A TFIIH basal transcripti 40.2 5.8 0.0002 28.6 -0.1 31 47-77 17-50 (59)
26 4hc9_A Trans-acting T-cell-spe 37.0 7.6 0.00026 31.3 0.2 74 1-74 4-89 (115)
27 1z60_A TFIIH basal transcripti 36.2 7 0.00024 28.2 -0.2 32 4-35 17-51 (59)
28 2egm_A Tripartite motif-contai 36.2 11 0.00038 26.1 0.9 31 3-34 19-50 (57)
29 3ddt_A E3 ubiquitin-protein li 34.4 22 0.00077 23.3 2.2 25 11-35 15-40 (48)
30 2jne_A Hypothetical protein YF 33.9 35 0.0012 27.2 3.5 41 1-55 31-71 (101)
31 2rp5_A Putative uncharacterize 33.4 5 0.00017 33.2 -1.5 26 218-254 88-113 (136)
32 1mm2_A MI2-beta; PHD, zinc fin 32.6 46 0.0016 23.3 3.7 25 3-35 10-34 (61)
33 2jrp_A Putative cytoplasmic pr 32.0 27 0.00094 26.7 2.5 58 1-74 1-60 (81)
34 1f62_A Transcription factor WS 31.0 40 0.0014 22.4 3.1 44 4-52 2-48 (51)
35 2k0a_A PRE-mRNA-splicing facto 30.8 9.8 0.00033 30.7 -0.2 42 22-63 22-63 (109)
36 2csv_A Tripartite motif protei 28.1 28 0.00095 24.7 1.9 31 3-34 19-49 (72)
37 2yql_A PHD finger protein 21A; 26.0 28 0.00094 23.9 1.5 25 3-35 10-34 (56)
38 1v6g_A Actin binding LIM prote 23.7 35 0.0012 24.3 1.8 61 14-75 3-73 (81)
39 1wj0_A Squamosa promoter-bindi 22.1 24 0.00081 25.6 0.5 42 27-72 10-51 (60)
40 1x4s_A Protein FON, zinc finge 21.7 28 0.00097 25.2 0.9 27 46-72 12-42 (59)
41 2fiy_A Protein FDHE homolog; F 20.2 1E+02 0.0035 28.5 4.6 61 3-72 183-260 (309)
No 1
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=98.48 E-value=6.2e-08 Score=75.33 Aligned_cols=84 Identities=19% Similarity=0.473 Sum_probs=67.9
Q ss_pred CCCCCccCC---CCeeEEecCCccccccccccccccccccccccccc----------ccccccCCCCceeeccccccccc
Q 023005 2 GYMCDFCGD---QRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRT----------LLCERCNSQPALVRCAEERVSLC 68 (289)
Q Consensus 2 ~~~Cd~C~~---a~A~vyC~aD~A~LC~~CD~~vHsaN~La~RH~Rv----------pLCd~C~~~PA~v~C~~d~a~LC 68 (289)
+..|++|.. .+|+.+|..+.+.||..|...+|..+...++|.++ .+|+.++..+..+||..|...+|
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~~~~~~~C~~H~~e~l~~fC~~~~~~iC 82 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVTDDQLIC 82 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSCCSSCCCCSSCSSSCCCEEETTTTEEEC
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccccCccCCcCcCcCCCcceEECCCCCCccc
Confidence 357999984 68999999999999999999999877766788765 24666666678999999999999
Q ss_pred cCccc-CccCCCCCCCCCcceecc
Q 023005 69 QNCDW-IGHGTSTSASSHKRQTIN 91 (289)
Q Consensus 69 ~~CD~-~~H~an~~as~HqR~pL~ 91 (289)
..|.. ..| ..|..+||.
T Consensus 83 ~~C~~~~~H------~~H~~~~l~ 100 (101)
T 2jun_A 83 ALCKLVGRH------RDHQVAALS 100 (101)
T ss_dssp HHHHHHTTT------SSSCBCCCC
T ss_pred hhcCCCCCc------CCCCeecCC
Confidence 99986 445 357666653
No 2
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.38 E-value=0.012 Score=45.17 Aligned_cols=43 Identities=28% Similarity=0.571 Sum_probs=35.9
Q ss_pred ccccccCC---CCceeeccccccccccCcccCccCCCCCCCCCcce
Q 023005 46 LLCERCNS---QPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQ 88 (289)
Q Consensus 46 pLCd~C~~---~PA~v~C~~d~a~LC~~CD~~~H~an~~as~HqR~ 88 (289)
..|++|.. .+|+.+|..|...||..|....|..+....+|+++
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~ 49 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI 49 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBS
T ss_pred CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeee
Confidence 56999984 57999999999999999998878766656788765
No 3
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=94.14 E-value=0.022 Score=40.41 Aligned_cols=46 Identities=15% Similarity=0.335 Sum_probs=35.9
Q ss_pred ccccccccccccCCCCceeeccccccccccCcccC-ccCCCCCCCCCcceecc
Q 023005 40 KRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTIN 91 (289)
Q Consensus 40 ~RH~RvpLCd~C~~~PA~v~C~~d~a~LC~~CD~~-~H~an~~as~HqR~pL~ 91 (289)
.+..+..+|..+...+..+||..|..++|..|... .| ..|..+||.
T Consensus 3 ~~~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ 49 (64)
T 2d8u_A 3 SGSSGHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH------KACEVAPLQ 49 (64)
T ss_dssp CCCCCCCCCSSCTTCCCCSEESSSCCCCCSHHHHSSST------TSSCEECTT
T ss_pred CCCCCCCcCcCcCCCccceEcCcCCceeCccccCCCcC------CCCCeeCHH
Confidence 34556678999977889999999999999999865 44 357766654
No 4
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=93.96 E-value=0.021 Score=38.83 Aligned_cols=44 Identities=23% Similarity=0.547 Sum_probs=35.6
Q ss_pred ccccccccccCCCCceeeccccccccccCcccCccCCCCCCCCCcceecc
Q 023005 42 HSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTIN 91 (289)
Q Consensus 42 H~RvpLCd~C~~~PA~v~C~~d~a~LC~~CD~~~H~an~~as~HqR~pL~ 91 (289)
..|...|..+...+..+||..|...+|..|....| ..|..+||.
T Consensus 3 ~~~~~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H------~~H~~~~l~ 46 (50)
T 2yvr_A 3 GERTVYCNVHKHEPLVLFCESCDTLTCRDCQLNAH------KDHQYQFLE 46 (50)
T ss_dssp CCCSCBCSSSTTCBCCEEETTTTEEECHHHHHTTT------TTCCEEETT
T ss_pred CcCCCcCcCCCCCCEEEEeCCCCEEEecccCCCcC------CCCceecHH
Confidence 45667788887788999999999999999987544 377777765
No 5
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=91.36 E-value=0.076 Score=35.80 Aligned_cols=42 Identities=14% Similarity=0.365 Sum_probs=32.0
Q ss_pred ccccccccCCCCceeeccccccccccCcccC-ccCCCCCCCCCcceecc
Q 023005 44 RTLLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTIN 91 (289)
Q Consensus 44 RvpLCd~C~~~PA~v~C~~d~a~LC~~CD~~-~H~an~~as~HqR~pL~ 91 (289)
+..+|..+...+..+||..|...+|..|... .| ..|..+||.
T Consensus 5 ~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ 47 (48)
T 3ddt_A 5 SHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH------KACEVAPLQ 47 (48)
T ss_dssp TSCBCSSSTTSBCCEEETTTTEEECHHHHHHSTT------TTSCEEECC
T ss_pred cCCcCCCCCCccccEEcCCCCeeEcccccCCCcC------CCCcEEeCC
Confidence 3456777776778899999999999999743 45 467777764
No 6
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=91.31 E-value=0.097 Score=35.91 Aligned_cols=41 Identities=20% Similarity=0.452 Sum_probs=32.6
Q ss_pred ccccccccCCCCceeeccccccccccCcccC-ccCCCCCCCCCcceecc
Q 023005 44 RTLLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTIN 91 (289)
Q Consensus 44 RvpLCd~C~~~PA~v~C~~d~a~LC~~CD~~-~H~an~~as~HqR~pL~ 91 (289)
+..+|..+. .+..+||..|...+|..|... .| ..|..+||.
T Consensus 7 ~~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ 48 (53)
T 2did_A 7 GESLCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAHTVVPLS 48 (53)
T ss_dssp SCCBCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTSCEEECC
T ss_pred CCCcChhhC-CeeeEEeCCCCeEEeccccCCCCC------CCCcEeeHH
Confidence 345688887 778999999999999999874 34 478888875
No 7
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=90.35 E-value=0.082 Score=39.71 Aligned_cols=44 Identities=27% Similarity=0.559 Sum_probs=35.7
Q ss_pred cccccccCC---CCceeeccccccccccCcccCccCCCCCCCCCcce
Q 023005 45 TLLCERCNS---QPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQ 88 (289)
Q Consensus 45 vpLCd~C~~---~PA~v~C~~d~a~LC~~CD~~~H~an~~as~HqR~ 88 (289)
...|+.|.. .+|..+|..|.+++|..|-...|.......+|+.+
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L~ 76 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI 76 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCCS
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCccc
Confidence 467999975 56899999999999999977668776667788754
No 8
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=89.93 E-value=0.22 Score=32.35 Aligned_cols=27 Identities=15% Similarity=0.385 Sum_probs=22.9
Q ss_pred cccccCCCCceeeccccccccccCcccC
Q 023005 47 LCERCNSQPALVRCAEERVSLCQNCDWI 74 (289)
Q Consensus 47 LCd~C~~~PA~v~C~~d~a~LC~~CD~~ 74 (289)
+|..++ .+..+||..|...+|..|...
T Consensus 5 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~ 31 (42)
T 1fre_A 5 KCSEHD-ERLKLYCKDDGTLSCVICRDS 31 (42)
T ss_dssp CCCSSC-SSCCCCCCSSSSSSCCTTSSC
T ss_pred cchhhC-CeeeEEeCCCCeEEeccCCCC
Confidence 577775 678899999999999999873
No 9
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=88.24 E-value=0.19 Score=37.26 Aligned_cols=44 Identities=20% Similarity=0.536 Sum_probs=33.4
Q ss_pred ccccccccccCCCCceeeccccccccccCcccC-ccCCCCCCCCCcceecc
Q 023005 42 HSRTLLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTIN 91 (289)
Q Consensus 42 H~RvpLCd~C~~~PA~v~C~~d~a~LC~~CD~~-~H~an~~as~HqR~pL~ 91 (289)
..+..+|..+...+..+||..|...+|..|... .| ..|..+||.
T Consensus 15 ~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ 59 (84)
T 2dja_A 15 HLRGITCLDHENEKVNMYCVSDDQLICALCKLVGRH------RDHQVASLN 59 (84)
T ss_dssp CSSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTT------TTCCBCCCC
T ss_pred CCCCCcCcCcCCccccEEcCCCCceEcccCcCCCCC------CCCCccCHH
Confidence 344557888877789999999999999999874 34 356666654
No 10
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.06 E-value=0.35 Score=34.15 Aligned_cols=41 Identities=22% Similarity=0.467 Sum_probs=31.8
Q ss_pred ccccccccCCCCceeeccccccccccCcccCc-cCCCCCCCCCcceecc
Q 023005 44 RTLLCERCNSQPALVRCAEERVSLCQNCDWIG-HGTSTSASSHKRQTIN 91 (289)
Q Consensus 44 RvpLCd~C~~~PA~v~C~~d~a~LC~~CD~~~-H~an~~as~HqR~pL~ 91 (289)
+..+|..+. .+..+||..|...+|..|.... | ..|...||.
T Consensus 13 ~~~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH------~~H~~~~l~ 54 (59)
T 2yrg_A 13 KVDHCARHG-EKLLLFCQEDGKVICWLCERSQEH------RGHHTFPTS 54 (59)
T ss_dssp CSSBCTTTC-CBCCEEETTTCSEECHHHHTSTTT------TTCCEEECC
T ss_pred cCccChhhC-ceeeeecCCCCcEEecccCCCCcC------CCCcEeeHH
Confidence 345687776 5788999999999999998743 4 477777775
No 11
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=84.45 E-value=0.38 Score=36.02 Aligned_cols=43 Identities=21% Similarity=0.485 Sum_probs=35.7
Q ss_pred CCCCCccCC---CCeeEEecCCcccccccccccccccccccccccc
Q 023005 2 GYMCDFCGD---QRSIVYCRSDAACLCLSCDRNVHLANALSKRHSR 44 (289)
Q Consensus 2 ~~~Cd~C~~---a~A~vyC~aD~A~LC~~CD~~vHsaN~La~RH~R 44 (289)
+..|++|.. .+|+-.|....+.||..|=+..|...+..++|.-
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L 75 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRL 75 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCC
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCcc
Confidence 357999986 6799999999999999998877877666677764
No 12
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=80.99 E-value=0.48 Score=34.34 Aligned_cols=40 Identities=18% Similarity=0.447 Sum_probs=30.8
Q ss_pred cccccccCCCCceeeccccccccccCcccCccCCCCCCCCCcceecc
Q 023005 45 TLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTIN 91 (289)
Q Consensus 45 vpLCd~C~~~PA~v~C~~d~a~LC~~CD~~~H~an~~as~HqR~pL~ 91 (289)
..+|..+. .+..+||..|...+|..|....| ..|..+||.
T Consensus 18 ~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H------~~H~~~~l~ 57 (72)
T 2csv_A 18 ARKCPVHG-KTMELFCQTDQTCICYLCMFQEH------KNHSTVTVE 57 (72)
T ss_dssp CCBCTTTC-CBCCEEESSSCCEECHHHHHTTT------SSSCEEEHH
T ss_pred cCcCcccC-CceEEEeCCCCeEEccccCCCCC------CCCCEecHH
Confidence 35688884 78899999999999999986444 367766654
No 13
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.85 E-value=0.61 Score=32.70 Aligned_cols=29 Identities=14% Similarity=0.420 Sum_probs=24.2
Q ss_pred cccccccCCCCceeeccccccccccCcccC
Q 023005 45 TLLCERCNSQPALVRCAEERVSLCQNCDWI 74 (289)
Q Consensus 45 vpLCd~C~~~PA~v~C~~d~a~LC~~CD~~ 74 (289)
..+|..+. ++..+||..|...+|..|...
T Consensus 18 ~~~C~~H~-e~L~lfC~~d~~~iC~~C~~~ 46 (57)
T 2egm_A 18 QGICPKHQ-EALKLFCEVDEEAICVVCRES 46 (57)
T ss_dssp TSBCTTTC-CBCCEEETTTTEEECHHHHHS
T ss_pred cCcChhhC-ceeeEEcCCCCcEEecccCCC
Confidence 34688874 678999999999999999864
No 14
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=67.76 E-value=8.3 Score=29.20 Aligned_cols=51 Identities=22% Similarity=0.467 Sum_probs=33.7
Q ss_pred cccccccccccCCCCce---eecccccc----ccccCcccCccCCCCCCCCCcceeccC
Q 023005 41 RHSRTLLCERCNSQPAL---VRCAEERV----SLCQNCDWIGHGTSTSASSHKRQTINC 92 (289)
Q Consensus 41 RH~RvpLCd~C~~~PA~---v~C~~d~a----~LC~~CD~~~H~an~~as~HqR~pL~~ 92 (289)
.|..+ .|+.|...|.. +.|..|.- -||+.|-..++.+..=...|.-++|..
T Consensus 18 ~H~~~-~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~ 75 (82)
T 2fc7_A 18 QHVGF-KCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYR 75 (82)
T ss_dssp EESSC-CCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECS
T ss_pred eeCcC-CCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeC
Confidence 34433 79999988754 78999975 799999877543222224566655543
No 15
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=65.21 E-value=3 Score=31.12 Aligned_cols=46 Identities=28% Similarity=0.457 Sum_probs=37.7
Q ss_pred cccccccccCCCCceeecccc-ccccccCcccCccCCCCCCCCCcceec
Q 023005 43 SRTLLCERCNSQPALVRCAEE-RVSLCQNCDWIGHGTSTSASSHKRQTI 90 (289)
Q Consensus 43 ~RvpLCd~C~~~PA~v~C~~d-~a~LC~~CD~~~H~an~~as~HqR~pL 90 (289)
...+.|-+|... |+++|..| .-..|..|-+..|.. ..-..|+.++.
T Consensus 6 ee~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~H~~-~d~r~Hk~v~y 52 (67)
T 2d8v_A 6 SGLPWCCICNED-ATLRCAGCDGDLYCARCFREGHDN-FDLKEHQTSPY 52 (67)
T ss_dssp CCCSSCTTTCSC-CCEEETTTTSEEECSSHHHHHTTT-SSTTTCCEECC
T ss_pred cCCCeeEEeCCC-CeEEecCCCCceehHHHHHHHccc-hhhhccceeec
Confidence 456789999976 99999998 778999999999953 45678988775
No 16
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=56.82 E-value=5.4 Score=25.50 Aligned_cols=32 Identities=25% Similarity=0.574 Sum_probs=23.9
Q ss_pred CCCCccCCCCeeEEecCCcccccccccc-ccccc
Q 023005 3 YMCDFCGDQRSIVYCRSDAACLCLSCDR-NVHLA 35 (289)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~-~vHsa 35 (289)
.+|..=+ .+-.+||..|...+|..|-. .-|..
T Consensus 4 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~~ 36 (42)
T 1fre_A 4 EKCSEHD-ERLKLYCKDDGTLSCVICRDSLKHAS 36 (42)
T ss_dssp CCCCSSC-SSCCCCCCSSSSSSCCTTSSCSSCTT
T ss_pred ccchhhC-CeeeEEeCCCCeEEeccCCCCCCCCC
Confidence 3455554 46789999999999999986 45543
No 17
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=55.85 E-value=7.3 Score=26.20 Aligned_cols=31 Identities=23% Similarity=0.589 Sum_probs=24.1
Q ss_pred CCCCccCCCCeeEEecCCcccccccccc-cccc
Q 023005 3 YMCDFCGDQRSIVYCRSDAACLCLSCDR-NVHL 34 (289)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~-~vHs 34 (289)
..|..=+ .+-.+||..|...+|..|-. .-|.
T Consensus 9 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~ 40 (53)
T 2did_A 9 SLCPQHH-EALSLFCYEDQEAVCLICAISHTHR 40 (53)
T ss_dssp CBCTTTC-CBCCEEESSSCSEECHHHHTSSTTT
T ss_pred CcChhhC-CeeeEEeCCCCeEEeccccCCCCCC
Confidence 4566555 56789999999999999986 5554
No 18
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.71 E-value=11 Score=27.17 Aligned_cols=48 Identities=29% Similarity=0.702 Sum_probs=31.0
Q ss_pred cccccccccccCCCCc---eeeccccc-cccccCcccCccCCCCCCCCCcceec
Q 023005 41 RHSRTLLCERCNSQPA---LVRCAEER-VSLCQNCDWIGHGTSTSASSHKRQTI 90 (289)
Q Consensus 41 RH~RvpLCd~C~~~PA---~v~C~~d~-a~LC~~CD~~~H~an~~as~HqR~pL 90 (289)
.|. ..|+.|...|. -+.|..|. --||+.|-..+.....--..|.-+-+
T Consensus 9 ~H~--~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~~~~H~~~H~~~~~ 60 (63)
T 2e5r_A 9 FHP--VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKEY 60 (63)
T ss_dssp CSC--SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCCCSSSCTTCCEEEE
T ss_pred eeC--CCCcCCCCcceecceEEecCCCCchhHHHHHhCCCcCCCCCCCCCEEEE
Confidence 455 67999998874 47799884 55999998776422221234544443
No 19
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.57 E-value=11 Score=27.04 Aligned_cols=27 Identities=33% Similarity=0.757 Sum_probs=23.0
Q ss_pred ccccccccCCCCceeecccccccccc-Cc
Q 023005 44 RTLLCERCNSQPALVRCAEERVSLCQ-NC 71 (289)
Q Consensus 44 RvpLCd~C~~~PA~v~C~~d~a~LC~-~C 71 (289)
+..+|.+|+. ++.+.|..|.+..|. .|
T Consensus 11 ~~~~C~vC~~-~~kY~CPrC~~~yCSl~C 38 (56)
T 2yqq_A 11 STVVCVICLE-KPKYRCPACRVPYCSVVC 38 (56)
T ss_dssp CCCCCTTTCS-CCSEECTTTCCEESSHHH
T ss_pred CCCccCcCcC-CCeeeCCCCCCCeeCHHH
Confidence 3457999999 999999999999987 44
No 20
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.83 E-value=12 Score=26.04 Aligned_cols=31 Identities=26% Similarity=0.776 Sum_probs=23.5
Q ss_pred CCCCccCCCCeeEEecCCcccccccccc-cccc
Q 023005 3 YMCDFCGDQRSIVYCRSDAACLCLSCDR-NVHL 34 (289)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~-~vHs 34 (289)
.+|..=+ .+-.+||..|...+|..|.. .-|.
T Consensus 15 ~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH~ 46 (59)
T 2yrg_A 15 DHCARHG-EKLLLFCQEDGKVICWLCERSQEHR 46 (59)
T ss_dssp SBCTTTC-CBCCEEETTTCSEECHHHHTSTTTT
T ss_pred ccChhhC-ceeeeecCCCCcEEecccCCCCcCC
Confidence 3455554 46789999999999999986 4554
No 21
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=46.90 E-value=13 Score=26.99 Aligned_cols=43 Identities=28% Similarity=0.609 Sum_probs=27.4
Q ss_pred CCCCccCCCCeeEEecCCccccccccccccccc---ccccccccccccccccCC
Q 023005 3 YMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLA---NALSKRHSRTLLCERCNS 53 (289)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vHsa---N~La~RH~RvpLCd~C~~ 53 (289)
..|..|+.. +...+|..|++..|.. .+|...-...++|..|..
T Consensus 13 ~~C~vC~~~--------~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 13 ARCGVCGDG--------TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp CCCTTTSCC--------TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CCcCCCCCC--------CeEEECCCCCCceecccCCCccCcCCCCCEECccccC
Confidence 468888753 3456688899888874 234444445566776654
No 22
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=43.90 E-value=19 Score=26.20 Aligned_cols=43 Identities=26% Similarity=0.481 Sum_probs=30.3
Q ss_pred CCCccCCCCeeEEecCCcccccccccc-cccccccccccccccccccccC
Q 023005 4 MCDFCGDQRSIVYCRSDAACLCLSCDR-NVHLANALSKRHSRTLLCERCN 52 (289)
Q Consensus 4 ~Cd~C~~a~A~vyC~aD~A~LC~~CD~-~vHsaN~La~RH~RvpLCd~C~ 52 (289)
.|..=+..+-.+||..|...+|..|-. .-|. .|...++-+.-.
T Consensus 20 ~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ea~~ 63 (84)
T 2dja_A 20 TCLDHENEKVNMYCVSDDQLICALCKLVGRHR------DHQVASLNDRFE 63 (84)
T ss_dssp CCSSCSSSCCCEEETTTTEEECHHHHHTSTTT------TCCBCCCCSSCC
T ss_pred cCcCcCCccccEEcCCCCceEcccCcCCCCCC------CCCccCHHHHHH
Confidence 455554456789999999999999986 5553 366666655443
No 23
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=41.98 E-value=16 Score=25.14 Aligned_cols=45 Identities=20% Similarity=0.342 Sum_probs=31.2
Q ss_pred CCCCccCCCCeeEEecCCcccccccccc-cccccccccccccccccccccCC
Q 023005 3 YMCDFCGDQRSIVYCRSDAACLCLSCDR-NVHLANALSKRHSRTLLCERCNS 53 (289)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~-~vHsaN~La~RH~RvpLCd~C~~ 53 (289)
..|..=...+-.+||..|...+|..|-. .-|. .|..+++-+....
T Consensus 9 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~~a~~~ 54 (64)
T 2d8u_A 9 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQSVFQG 54 (64)
T ss_dssp CCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTTTCCSS
T ss_pred CcCcCcCCCccceEcCcCCceeCccccCCCcCC------CCCeeCHHHHHHH
Confidence 3455554456789999999999999975 4664 3666666554443
No 24
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=40.84 E-value=15 Score=24.22 Aligned_cols=32 Identities=22% Similarity=0.578 Sum_probs=24.3
Q ss_pred CCCCccCCCCeeEEecCCcccccccccccccc
Q 023005 3 YMCDFCGDQRSIVYCRSDAACLCLSCDRNVHL 34 (289)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vHs 34 (289)
..|..=...+-.+||..|...+|..|-..-|.
T Consensus 7 ~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H~ 38 (50)
T 2yvr_A 7 VYCNVHKHEPLVLFCESCDTLTCRDCQLNAHK 38 (50)
T ss_dssp CBCSSSTTCBCCEEETTTTEEECHHHHHTTTT
T ss_pred CcCcCCCCCCEEEEeCCCCEEEecccCCCcCC
Confidence 34555544567899999999999999875554
No 25
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=40.17 E-value=5.8 Score=28.64 Aligned_cols=31 Identities=26% Similarity=0.630 Sum_probs=23.4
Q ss_pred cccccCCCC---ceeeccccccccccCcccCccC
Q 023005 47 LCERCNSQP---ALVRCAEERVSLCQNCDWIGHG 77 (289)
Q Consensus 47 LCd~C~~~P---A~v~C~~d~a~LC~~CD~~~H~ 77 (289)
.|-.|...- ..+.|..|+..+|..||.-+|.
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe 50 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHD 50 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHh
Confidence 355554432 2477999999999999999986
No 26
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=37.01 E-value=7.6 Score=31.27 Aligned_cols=74 Identities=23% Similarity=0.516 Sum_probs=46.6
Q ss_pred CCCCCCccCCCCeeEEecCCc-cccccccc--cccccccc-ccccccc-------cccccccCCCCceee-ccccccccc
Q 023005 1 MGYMCDFCGDQRSIVYCRSDA-ACLCLSCD--RNVHLANA-LSKRHSR-------TLLCERCNSQPALVR-CAEERVSLC 68 (289)
Q Consensus 1 M~~~Cd~C~~a~A~vyC~aD~-A~LC~~CD--~~vHsaN~-La~RH~R-------vpLCd~C~~~PA~v~-C~~d~a~LC 68 (289)
+++.|..|+.....+|=+.+. ..||-.|. .+.|..|. +.....| ...|..|+......| =..+...||
T Consensus 4 ~~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~nRP~~KpKKR~~~~~~~~~~C~~C~t~~tp~WRr~~~g~~lC 83 (115)
T 4hc9_A 4 MGRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRLSAARRAGTSCANCQTTTTTLWRRNANGDPVC 83 (115)
T ss_dssp --CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSCCCCSSCCCCCCCCCCTTCCCTTTCCSCCSSCEECTTSCEEC
T ss_pred CCCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccccccccccccccccccccccCCCcCCCCcceeEECCCCCCcc
Confidence 367899999876666666554 47999999 44455544 2222111 245889987765544 334456899
Q ss_pred cCcccC
Q 023005 69 QNCDWI 74 (289)
Q Consensus 69 ~~CD~~ 74 (289)
..|..-
T Consensus 84 NaCgl~ 89 (115)
T 4hc9_A 84 NACGLY 89 (115)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 999754
No 27
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=36.19 E-value=7 Score=28.21 Aligned_cols=32 Identities=25% Similarity=0.582 Sum_probs=24.4
Q ss_pred CCCccCCCCe---eEEecCCccccccccccccccc
Q 023005 4 MCDFCGDQRS---IVYCRSDAACLCLSCDRNVHLA 35 (289)
Q Consensus 4 ~Cd~C~~a~A---~vyC~aD~A~LC~~CD~~vHsa 35 (289)
.|-.|..... ++-|......+|.+||.-+|..
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~ 51 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDS 51 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhh
Confidence 3667776532 4559999999999999999864
No 28
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.18 E-value=11 Score=26.06 Aligned_cols=31 Identities=19% Similarity=0.576 Sum_probs=23.3
Q ss_pred CCCCccCCCCeeEEecCCcccccccccc-cccc
Q 023005 3 YMCDFCGDQRSIVYCRSDAACLCLSCDR-NVHL 34 (289)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~-~vHs 34 (289)
.+|..=+ .+-.+||..|.+.+|..|.. .-|.
T Consensus 19 ~~C~~H~-e~L~lfC~~d~~~iC~~C~~~~eH~ 50 (57)
T 2egm_A 19 GICPKHQ-EALKLFCEVDEEAICVVCRESRSHK 50 (57)
T ss_dssp SBCTTTC-CBCCEEETTTTEEECHHHHHSHHHH
T ss_pred CcChhhC-ceeeEEcCCCCcEEecccCCCCCCC
Confidence 3465553 56789999999999999985 4453
No 29
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=34.42 E-value=22 Score=23.25 Aligned_cols=25 Identities=24% Similarity=0.542 Sum_probs=20.0
Q ss_pred CCeeEEecCCccccccccc-cccccc
Q 023005 11 QRSIVYCRSDAACLCLSCD-RNVHLA 35 (289)
Q Consensus 11 a~A~vyC~aD~A~LC~~CD-~~vHsa 35 (289)
.+-.+||..|...+|..|- ..-|..
T Consensus 15 e~l~lfC~~d~~~iC~~C~~~~~H~~ 40 (48)
T 3ddt_A 15 EKINIYCLTCEVPTCSMCKVFGIHKA 40 (48)
T ss_dssp SBCCEEETTTTEEECHHHHHHSTTTT
T ss_pred ccccEEcCCCCeeEcccccCCCcCCC
Confidence 4577999999999999996 445654
No 30
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=33.91 E-value=35 Score=27.17 Aligned_cols=41 Identities=22% Similarity=0.471 Sum_probs=22.4
Q ss_pred CCCCCCccCCCCeeEEecCCcccccccccccccccccccccccccccccccCCCC
Q 023005 1 MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQP 55 (289)
Q Consensus 1 M~~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vHsaN~La~RH~RvpLCd~C~~~P 55 (289)
|...|..|+..-. + .+....|..|+.. =.+..+|.-|+..-
T Consensus 31 M~~~CP~Cq~eL~--~--~g~~~hC~~C~~~----------f~~~a~CPdC~q~L 71 (101)
T 2jne_A 31 MELHCPQCQHVLD--Q--DNGHARCRSCGEF----------IEMKALCPDCHQPL 71 (101)
T ss_dssp CCCBCSSSCSBEE--E--ETTEEEETTTCCE----------EEEEEECTTTCSBC
T ss_pred ccccCccCCCcce--e--cCCEEECccccch----------hhccccCcchhhHH
Confidence 6667777775422 2 2334447777742 23456677666543
No 31
>2rp5_A Putative uncharacterized protein CEP-1; oligomerization domain, SAM domain, transcription; NMR {Caenorhabditis elegans}
Probab=33.43 E-value=5 Score=33.17 Aligned_cols=26 Identities=35% Similarity=0.558 Sum_probs=21.6
Q ss_pred CCCCCcccccccchhhhhhccccchhhhhhcCCCccc
Q 023005 218 DFNMDEMDLNFENYEELFGVTLNHSEELLENGGIESL 254 (289)
Q Consensus 218 ~f~mDDvdLnfENYEELFG~S~~~se~lFedgGIdsl 254 (289)
=|+|-|++--||.|+|+| |-+||||-
T Consensus 88 i~TM~Dl~k~Fe~~~~iF-----------E~IGiDss 113 (136)
T 2rp5_A 88 IYTMGDMIREFEKHNDIF-----------ERIGIDSS 113 (136)
T ss_dssp CCSTTHHHHHHHHTSCHH-----------HHHTCCGG
T ss_pred ceeHHHHHHHHHHHHHHH-----------HHhcccHH
Confidence 489999999999999886 45778774
No 32
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=32.58 E-value=46 Score=23.29 Aligned_cols=25 Identities=24% Similarity=0.635 Sum_probs=17.6
Q ss_pred CCCCccCCCCeeEEecCCccccccccccccccc
Q 023005 3 YMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLA 35 (289)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vHsa 35 (289)
..|..|+.. +.-.+|..|++..|..
T Consensus 10 ~~C~vC~~~--------g~ll~Cd~C~~~fH~~ 34 (61)
T 1mm2_A 10 EFCRVCKDG--------GELLCCDTCPSSYHIH 34 (61)
T ss_dssp SSCTTTCCC--------SSCBCCSSSCCCBCSS
T ss_pred CcCCCCCCC--------CCEEEcCCCCHHHccc
Confidence 457778753 3566788899888874
No 33
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=31.96 E-value=27 Score=26.68 Aligned_cols=58 Identities=21% Similarity=0.434 Sum_probs=32.5
Q ss_pred CCCCCCccCCCCeeEEecCCcccccccccccccccccccccccccccccccCCCCceeecccc--ccccccCcccC
Q 023005 1 MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEE--RVSLCQNCDWI 74 (289)
Q Consensus 1 M~~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vHsaN~La~RH~RvpLCd~C~~~PA~v~C~~d--~a~LC~~CD~~ 74 (289)
|...|-.|+..... ......|..|+..+ .+..+|..|+..-.. |.+| ...+|..|..-
T Consensus 1 M~~~CP~C~~~l~~----~~~~~~C~~C~~~~----------~~~afCPeCgq~Le~--lkACGA~~yFC~~C~~L 60 (81)
T 2jrp_A 1 MEITCPVCHHALER----NGDTAHCETCAKDF----------SLQALCPDCRQPLQV--LKACGAVDYFCQNGHGL 60 (81)
T ss_dssp CCCCCSSSCSCCEE----CSSEEECTTTCCEE----------EEEEECSSSCSCCCE--EEETTEEEECCTTTTCC
T ss_pred CCCCCCCCCCcccc----CCCceECccccccC----------CCcccCcchhhHHHH--HHhcCCcCeeeccCCCE
Confidence 77788888865432 23344577777532 223367777754433 3333 25677777543
No 34
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=31.04 E-value=40 Score=22.36 Aligned_cols=44 Identities=27% Similarity=0.629 Sum_probs=26.1
Q ss_pred CCCccCCCCeeEEecCCccccccccccccccc--c-cccccccccccccccC
Q 023005 4 MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLA--N-ALSKRHSRTLLCERCN 52 (289)
Q Consensus 4 ~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vHsa--N-~La~RH~RvpLCd~C~ 52 (289)
.|..|+... ..+.-.+|..|++..|.. + +|...-...+.|..|.
T Consensus 2 ~C~vC~~~~-----~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~ 48 (51)
T 1f62_A 2 RCKVCRKKG-----EDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQ 48 (51)
T ss_dssp CCTTTCCSS-----CCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTS
T ss_pred CCCCCCCCC-----CCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcc
Confidence 588888653 134556688999888864 1 2333333445555554
No 35
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=30.83 E-value=9.8 Score=30.72 Aligned_cols=42 Identities=19% Similarity=0.496 Sum_probs=20.1
Q ss_pred ccccccccccccccccccccccccccccccCCCCceeecccc
Q 023005 22 ACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEE 63 (289)
Q Consensus 22 A~LC~~CD~~vHsaN~La~RH~RvpLCd~C~~~PA~v~C~~d 63 (289)
+.||..||-+--.-....+-...+.+|+.|....-.-+|..|
T Consensus 22 G~lCekcdGkC~iCDs~Vrp~~~VrICdeCs~G~~~~rCIiC 63 (109)
T 2k0a_A 22 GLLCEKCDGKCPICDSYVRPKRKVRVCENCSFGKQAKNCIIC 63 (109)
T ss_dssp CEECGGGTTCCTTTCCCCCCCEECEEEHHHHTSSTTSBCTTT
T ss_pred hhhhhhcCCcccccCCccCCcceEEECCcCCCCCcCCceEEc
Confidence 455555554433333333334556677766544434344433
No 36
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=28.10 E-value=28 Score=24.74 Aligned_cols=31 Identities=26% Similarity=0.735 Sum_probs=23.7
Q ss_pred CCCCccCCCCeeEEecCCcccccccccccccc
Q 023005 3 YMCDFCGDQRSIVYCRSDAACLCLSCDRNVHL 34 (289)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vHs 34 (289)
..|..=+ .+-.+||..|...+|..|-..-|.
T Consensus 19 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H~ 49 (72)
T 2csv_A 19 RKCPVHG-KTMELFCQTDQTCICYLCMFQEHK 49 (72)
T ss_dssp CBCTTTC-CBCCEEESSSCCEECHHHHHTTTS
T ss_pred CcCcccC-CceEEEeCCCCeEEccccCCCCCC
Confidence 3455553 577899999999999999765554
No 37
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.96 E-value=28 Score=23.89 Aligned_cols=25 Identities=28% Similarity=0.723 Sum_probs=17.1
Q ss_pred CCCCccCCCCeeEEecCCccccccccccccccc
Q 023005 3 YMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLA 35 (289)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vHsa 35 (289)
..|..|+.. +.-.+|..|++..|..
T Consensus 10 ~~C~vC~~~--------g~ll~Cd~C~~~~H~~ 34 (56)
T 2yql_A 10 DFCSVCRKS--------GQLLMCDTCSRVYHLD 34 (56)
T ss_dssp CSCSSSCCS--------SCCEECSSSSCEECSS
T ss_pred CCCccCCCC--------CeEEEcCCCCcceECc
Confidence 468888864 3455677888877764
No 38
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.69 E-value=35 Score=24.26 Aligned_cols=61 Identities=20% Similarity=0.336 Sum_probs=36.6
Q ss_pred eEEecCC----ccccccccccccccccccc----ccccccccccccCCCCc--eeeccccccccccCcccCc
Q 023005 14 IVYCRSD----AACLCLSCDRNVHLANALS----KRHSRTLLCERCNSQPA--LVRCAEERVSLCQNCDWIG 75 (289)
Q Consensus 14 ~vyC~aD----~A~LC~~CD~~vHsaN~La----~RH~RvpLCd~C~~~PA--~v~C~~d~a~LC~~CD~~~ 75 (289)
.+||+.| -+..|..|+..|.. ..+. .-|..-..|..|...-. ..+-......+|..|....
T Consensus 3 ~~yC~~dy~~~~~~~C~~C~~~I~~-~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~ 73 (81)
T 1v6g_A 3 SGSSGLDYQRLYGTRCFSCDQFIEG-EVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPV 73 (81)
T ss_dssp CCCCCSCGGGSCCCBCTTTCCBCCS-CCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCC
T ss_pred CCcchHHHHhHhCCcCccccCEecc-ceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhccc
Confidence 4688888 35579999998873 2222 23555556778876532 2333344445788776544
No 39
>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=22.11 E-value=24 Score=25.56 Aligned_cols=42 Identities=19% Similarity=0.449 Sum_probs=31.9
Q ss_pred cccccccccccccccccccccccccCCCCceeeccccccccccCcc
Q 023005 27 SCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCD 72 (289)
Q Consensus 27 ~CD~~vHsaN~La~RH~RvpLCd~C~~~PA~v~C~~d~a~LC~~CD 72 (289)
.|++.+-.+ ..-|.|..+|+.+...|+.+. ..-...+|+.|-
T Consensus 10 gC~~dl~~~---k~Y~rR~rvCe~H~ka~~v~~-~G~~~RFCQQCs 51 (60)
T 1wj0_A 10 NCGADLSKV---KDYHRRHKVCEIHSKATTALV-GGIMQRFCQQCS 51 (60)
T ss_dssp TCCCEETSC---CSSTTTTTCCHHHHTCSCEEE-TTEEECCCSSSC
T ss_pred CCCcChhHh---HHHhhccccChhHcCCCEEEE-CCEEEehhhhcc
Confidence 466666544 346788899999999888776 556788999994
No 40
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=21.69 E-value=28 Score=25.16 Aligned_cols=27 Identities=30% Similarity=0.647 Sum_probs=23.0
Q ss_pred ccccccCC---CCceeecccccccccc-Ccc
Q 023005 46 LLCERCNS---QPALVRCAEERVSLCQ-NCD 72 (289)
Q Consensus 46 pLCd~C~~---~PA~v~C~~d~a~LC~-~CD 72 (289)
.+|.+|.. .++.+.|..|.+..|. .|-
T Consensus 12 ~~C~vC~~~~~~~akY~CPrC~~rYCSl~C~ 42 (59)
T 1x4s_A 12 GPCGFCPAGEVQPARYTCPRCNAPYCSLRCY 42 (59)
T ss_dssp EEECSSCTTCCEEECEECTTTCCEESSHHHH
T ss_pred CcCcCCCCCcCCCccccCcCCCCCccChHHH
Confidence 58999985 6899999999999997 553
No 41
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=20.23 E-value=1e+02 Score=28.51 Aligned_cols=61 Identities=23% Similarity=0.512 Sum_probs=37.6
Q ss_pred CCCCccCCCCeeEEecC----Ccc--cccccccccccccccccccccccccccccCCCCceeec-ccc----------cc
Q 023005 3 YMCDFCGDQRSIVYCRS----DAA--CLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC-AEE----------RV 65 (289)
Q Consensus 3 ~~Cd~C~~a~A~vyC~a----D~A--~LC~~CD~~vHsaN~La~RH~RvpLCd~C~~~PA~v~C-~~d----------~a 65 (289)
..|-.||+.|..-+-+. ++. ..|.-|...- |.+...|..|+......|- ... ++
T Consensus 183 ~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W---------~~~R~~C~~Cg~~~~l~y~~~e~~~~~~~~~~~r~ 253 (309)
T 2fiy_A 183 TLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEW---------HYVRIKCSHCEESKHLAYLSLEHDGQPAEKAVLRA 253 (309)
T ss_dssp SSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEE---------ECCTTSCSSSCCCSCCEEECCCC-CCCSTTCSEEE
T ss_pred CCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEE---------eecCcCCcCCCCCCCeeEEEecCccccCCCcceEE
Confidence 57999999886544442 332 2388888544 3444578888876533332 221 57
Q ss_pred ccccCcc
Q 023005 66 SLCQNCD 72 (289)
Q Consensus 66 ~LC~~CD 72 (289)
-.|..|.
T Consensus 254 e~C~~C~ 260 (309)
T 2fiy_A 254 ETCPSCQ 260 (309)
T ss_dssp EEETTTT
T ss_pred EEccccc
Confidence 7888885
Done!